Citrus Sinensis ID: 004336
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 760 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZQX6 | 888 | ETO1-like protein 1 OS=Ar | yes | no | 0.481 | 0.412 | 0.821 | 1e-173 | |
| O65020 | 951 | Ethylene-overproduction p | no | no | 0.543 | 0.434 | 0.585 | 1e-138 | |
| Q9LV01 | 925 | ETO1-like protein 2 OS=Ar | no | no | 0.388 | 0.318 | 0.602 | 1e-118 |
| >sp|Q9ZQX6|ETOL1_ARATH ETO1-like protein 1 OS=Arabidopsis thaliana GN=EOL1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 608 bits (1567), Expect = e-173, Method: Compositional matrix adjust.
Identities = 304/370 (82%), Positives = 334/370 (90%)
Query: 391 CVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 450
C+ L +Y+ A +A LTL PDYRMF+G+VA QL LV EH++NWT ADCW+QLY+
Sbjct: 519 CLYLGMDDYEAALRDIQAALTLCPDYRMFDGKVAGRQLQTLVYEHVENWTTADCWMQLYE 578
Query: 451 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 510
+WS+VDDIGSLSVIYQMLESDA KGVLYFRQSLLLLRLNCPEAAMRSLQLAR+HA+SDHE
Sbjct: 579 KWSNVDDIGSLSVIYQMLESDACKGVLYFRQSLLLLRLNCPEAAMRSLQLAREHASSDHE 638
Query: 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLE 570
RLVYEGWILYDT HCEEGL+KA+ESI +KRSFEA+FL+AYALA+SS D S SSTVVSLLE
Sbjct: 639 RLVYEGWILYDTGHCEEGLQKAKESIGIKRSFEAYFLQAYALAESSLDPSSSSTVVSLLE 698
Query: 571 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 630
DALKCPSDRLRKGQALNNLGSVYVDC +LDLAADCY NALK+RHTRAHQGLARVHFL+N+
Sbjct: 699 DALKCPSDRLRKGQALNNLGSVYVDCEKLDLAADCYINALKVRHTRAHQGLARVHFLRND 758
Query: 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 690
K AYEEMT+LI+KA+NNASAYEKRSEYCDREL ++DLEMVT+LDPLRVYPYRYRAAVLM
Sbjct: 759 KAAAYEEMTRLIEKAQNNASAYEKRSEYCDRELAKSDLEMVTRLDPLRVYPYRYRAAVLM 818
Query: 691 DSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750
DS KE EAI ELSRAIAFKADLHLLHLRAAFHEH GDV ALRDCRAALSVDPN QEMLE
Sbjct: 819 DSRKEREAITELSRAIAFKADLHLLHLRAAFHEHIGDVTSALRDCRAALSVDPNHQEMLE 878
Query: 751 LHSRVYSHEP 760
LHSRV SHEP
Sbjct: 879 LHSRVNSHEP 888
|
Possible regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes. Arabidopsis thaliana (taxid: 3702) |
| >sp|O65020|ETO1_ARATH Ethylene-overproduction protein 1 OS=Arabidopsis thaliana GN=ETO1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust.
Identities = 254/434 (58%), Positives = 316/434 (72%), Gaps = 21/434 (4%)
Query: 346 SLYCLLSEVAMNLDPRS--DKTVCFL----------ERLLESAETDRQRLLAF------- 386
SLYC E ++LD + D T+ F E +A + ++L F
Sbjct: 516 SLYCSGKEKLLDLDTATEFDPTLTFPYKFRAVALVEENQFGAAIAELNKILGFKASPDCL 575
Query: 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 446
+ + ++Y+ A A+LTL P++ MF ++ + L+R W+ ADCW+
Sbjct: 576 EMRAWISIGMEDYEGALKDIRALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWM 635
Query: 447 QLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 506
QLYDRWSSVDDIGSL+V++ ML +D K +L FRQSLLLLRLNC +AAMRSL+LAR H+
Sbjct: 636 QLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSK 695
Query: 507 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 566
S+HERLVYEGWILYDT H EE L KAEESI ++RSFEAFFLKAYALADS+ D S+ V+
Sbjct: 696 SEHERLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVI 755
Query: 567 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHF 626
LL++ALKCPSD LRKGQALNNLGSVYVDC +LDLAADCY+NAL I+HTRAHQGLARV+
Sbjct: 756 QLLQEALKCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYTNALTIKHTRAHQGLARVYH 815
Query: 627 LKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRA 686
LKN + AY+EMTKLI+KA+NNASAYEKRSEYCDRE+ ++DL + TQLDPLR YPYRYRA
Sbjct: 816 LKNQRKAAYDEMTKLIEKAQNNASAYEKRSEYCDREMAQSDLCLATQLDPLRTYPYRYRA 875
Query: 687 AVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQ 746
AVLMD HKE+EAI ELSRAI+FK DL LLHLRAAF++ G+ A++DC AAL +DP
Sbjct: 876 AVLMDDHKESEAIDELSRAISFKPDLQLLHLRAAFYDSMGEGASAIKDCEAALCIDPGHA 935
Query: 747 EMLELHSRVYSHEP 760
+ LEL+ + + EP
Sbjct: 936 DTLELYHK--AREP 947
|
Essential regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LV01|ETOL2_ARATH ETO1-like protein 2 OS=Arabidopsis thaliana GN=EOL2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/347 (60%), Positives = 266/347 (76%)
Query: 408 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467
A+L+L P+Y +F G++ + L + I+ + ADCW++L+DRWS+VDD+ SL+V++QM
Sbjct: 563 AVLSLEPNYVVFGGKMRDDLVEALTAQCIEVESEADCWVRLFDRWSAVDDVASLAVVHQM 622
Query: 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEE 527
L++D K L FRQSLLLLRLNC AAMR L++A A S+ ERLVYEGW+LYD + EE
Sbjct: 623 LQNDPSKNFLRFRQSLLLLRLNCQGAAMRCLRMAWNLATSEAERLVYEGWLLYDMGYVEE 682
Query: 528 GLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 587
L KAEE+I ++RSFEAFFLKAYALAD + D+ S VV +LE+ALKCPSD LRKGQALN
Sbjct: 683 TLTKAEEAISIQRSFEAFFLKAYALADKNLDADEISCVVQVLEEALKCPSDGLRKGQALN 742
Query: 588 NLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 647
NLGS+Y++ G LD A Y NA++I+H RA QGLARV+FLKN + A EEMTKLI+K+ +
Sbjct: 743 NLGSIYINLGMLDQAETAYKNAIEIKHIRARQGLARVYFLKNQRKEACEEMTKLIEKSCS 802
Query: 648 NASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 707
A+AYEKRSEYC+RE + DL+M T LDPLR YPYRYRAAVLMD +E EA+ ELS+AIA
Sbjct: 803 KAAAYEKRSEYCEREKAKEDLDMATTLDPLRTYPYRYRAAVLMDDQRETEAVEELSKAIA 862
Query: 708 FKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754
F+ +L LHLRAAFHE TG++ A +DC AAL +DPN E L L+SR
Sbjct: 863 FRPELQTLHLRAAFHEATGNLSLATQDCEAALCLDPNHTETLHLYSR 909
|
Potential regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 760 | ||||||
| 359495432 | 886 | PREDICTED: ETO1-like protein 1-like [Vit | 0.482 | 0.414 | 0.891 | 0.0 | |
| 224082686 | 787 | predicted protein [Populus trichocarpa] | 0.439 | 0.424 | 0.870 | 0.0 | |
| 449526563 | 890 | PREDICTED: ETO1-like protein 1-like [Cuc | 0.482 | 0.412 | 0.867 | 0.0 | |
| 449455250 | 890 | PREDICTED: ETO1-like protein 1-like [Cuc | 0.482 | 0.412 | 0.867 | 0.0 | |
| 70780055 | 886 | ethylene overproducer-like 1 [Solanum ly | 0.482 | 0.414 | 0.840 | 0.0 | |
| 350539533 | 886 | ethylene-overproducer1-like protein [Sol | 0.482 | 0.414 | 0.835 | 0.0 | |
| 414591612 | 887 | TPA: hypothetical protein ZEAMMB73_35280 | 0.510 | 0.437 | 0.782 | 1e-177 | |
| 357156332 | 888 | PREDICTED: ETO1-like protein 1-like [Bra | 0.510 | 0.436 | 0.777 | 1e-177 | |
| 242068971 | 890 | hypothetical protein SORBIDRAFT_05g02278 | 0.510 | 0.435 | 0.779 | 1e-177 | |
| 115486045 | 857 | Os11g0585900 [Oryza sativa Japonica Grou | 0.452 | 0.401 | 0.841 | 1e-176 |
| >gi|359495432|ref|XP_002280519.2| PREDICTED: ETO1-like protein 1-like [Vitis vinifera] gi|296084480|emb|CBI25039.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/370 (89%), Positives = 347/370 (93%)
Query: 391 CVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 450
C L + Y+ A +AILTLSPDYRMFEGRVAASQL MLVREH+++WT ADCWLQLYD
Sbjct: 517 CFYLAVENYEAAFCDVQAILTLSPDYRMFEGRVAASQLRMLVREHVESWTTADCWLQLYD 576
Query: 451 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 510
RWSSVDDIGSLSVIYQMLESDA KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+++HE
Sbjct: 577 RWSSVDDIGSLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASNEHE 636
Query: 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLE 570
RLVYEGWILYDT HCEEGLRKAEESI +KRSFEAFFLKAYALADSSQD SCSSTVVSLLE
Sbjct: 637 RLVYEGWILYDTGHCEEGLRKAEESIGLKRSFEAFFLKAYALADSSQDPSCSSTVVSLLE 696
Query: 571 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 630
DALKCPSDRLRKGQALNNLGSVYVDCG+L+LAADCY NALKIRHTRAHQGLARVHFLKN+
Sbjct: 697 DALKCPSDRLRKGQALNNLGSVYVDCGKLELAADCYINALKIRHTRAHQGLARVHFLKND 756
Query: 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 690
KT AY EMTKLI+KARNNASAYEKRSEYC+RELT+ADLEMVT+LDPLRVYPYRYRAAVLM
Sbjct: 757 KTAAYVEMTKLIEKARNNASAYEKRSEYCERELTKADLEMVTRLDPLRVYPYRYRAAVLM 816
Query: 691 DSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750
DSHKE EAIAELSRAIAFKADLHLLHLRAAFHEH GDVLGALRDCRAALSVDPN QEMLE
Sbjct: 817 DSHKEKEAIAELSRAIAFKADLHLLHLRAAFHEHIGDVLGALRDCRAALSVDPNHQEMLE 876
Query: 751 LHSRVYSHEP 760
LHSRV SHEP
Sbjct: 877 LHSRVNSHEP 886
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082686|ref|XP_002306795.1| predicted protein [Populus trichocarpa] gi|222856244|gb|EEE93791.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/370 (87%), Positives = 341/370 (92%)
Query: 391 CVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 450
C L + Y A +AILTLSPDYRMFEGRVAASQL LVREH++NWT ADCWLQLYD
Sbjct: 418 CFYLALENYQAAICDVQAILTLSPDYRMFEGRVAASQLRTLVREHVENWTTADCWLQLYD 477
Query: 451 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 510
RWSSVDD GSLSVIYQMLESDA KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+++HE
Sbjct: 478 RWSSVDDTGSLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASTEHE 537
Query: 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLE 570
RLVYEGWILYDT HC EGL+KAEESI +K+SFEAFFLKAYALADSS D SCSSTV+SLLE
Sbjct: 538 RLVYEGWILYDTGHCNEGLQKAEESINIKKSFEAFFLKAYALADSSLDPSCSSTVISLLE 597
Query: 571 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 630
+ALKCPSDRLRKGQALNNLGSVYVDCG+LDLAADCY NALKIRHTRAHQGLARVHFL+N
Sbjct: 598 EALKCPSDRLRKGQALNNLGSVYVDCGKLDLAADCYINALKIRHTRAHQGLARVHFLRNE 657
Query: 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 690
KT AYEEMTKLI+KA+NNASAYEKRSEYCDRELT+ADLEMVTQLDPLRVYPYRYRAAVLM
Sbjct: 658 KTAAYEEMTKLIEKAQNNASAYEKRSEYCDRELTKADLEMVTQLDPLRVYPYRYRAAVLM 717
Query: 691 DSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750
DSHKE EAIAELSRAI FKADLHLLHLRAAFHEHTGDVL ALRDCRAALSVDPN +EMLE
Sbjct: 718 DSHKEKEAIAELSRAIVFKADLHLLHLRAAFHEHTGDVLAALRDCRAALSVDPNHREMLE 777
Query: 751 LHSRVYSHEP 760
LH+RV SHEP
Sbjct: 778 LHNRVNSHEP 787
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449526563|ref|XP_004170283.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/370 (86%), Positives = 343/370 (92%)
Query: 391 CVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 450
C L ++Y A +AILTLSPDYRMFEG+ AASQL LVREH+ NWT ADCW+QLYD
Sbjct: 521 CFYLALEDYQAAICDIQAILTLSPDYRMFEGKAAASQLRTLVREHVSNWTTADCWIQLYD 580
Query: 451 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 510
RWSSVDDIGSLSVIYQMLESDA KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+S+HE
Sbjct: 581 RWSSVDDIGSLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHE 640
Query: 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLE 570
RLVYEGWILYDT HCEEGL+KAEESI++KRSFEAFFLKAYALADSSQD SCSSTV+SLLE
Sbjct: 641 RLVYEGWILYDTGHCEEGLQKAEESIKIKRSFEAFFLKAYALADSSQDPSCSSTVISLLE 700
Query: 571 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 630
DALKCPSDRLRKGQALNNLGSVYVDCG+LDLAADCY NALKIRHTRAHQGLARVH+L+N+
Sbjct: 701 DALKCPSDRLRKGQALNNLGSVYVDCGKLDLAADCYINALKIRHTRAHQGLARVHYLRND 760
Query: 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 690
K AYEEMTKLI+KARNNASAYEKRSEY DR+LT++DL+MVTQLDPLRVYPYRYRAAVLM
Sbjct: 761 KAAAYEEMTKLIEKARNNASAYEKRSEYGDRDLTKSDLDMVTQLDPLRVYPYRYRAAVLM 820
Query: 691 DSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750
DSHK +EAIAELSRAIAFKADLHLLHLRAAFHEHT DVLGALRDCRAALSVDPN QEMLE
Sbjct: 821 DSHKVDEAIAELSRAIAFKADLHLLHLRAAFHEHTNDVLGALRDCRAALSVDPNHQEMLE 880
Query: 751 LHSRVYSHEP 760
LHSRV S EP
Sbjct: 881 LHSRVNSQEP 890
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455250|ref|XP_004145366.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus] gi|449473087|ref|XP_004153780.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/370 (86%), Positives = 343/370 (92%)
Query: 391 CVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 450
C L ++Y A +AILTLSPDYRMFEG+ AASQL LVREH+ NWT ADCW+QLYD
Sbjct: 521 CFYLALEDYQAAICDIQAILTLSPDYRMFEGKAAASQLRTLVREHVSNWTTADCWIQLYD 580
Query: 451 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 510
RWSSVDDIGSLSVIYQMLESDA KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+S+HE
Sbjct: 581 RWSSVDDIGSLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHE 640
Query: 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLE 570
RLVYEGWILYDT HCEEGL+KAEESI++KRSFEAFFLKAYALADSSQD SCSSTV+SLLE
Sbjct: 641 RLVYEGWILYDTGHCEEGLQKAEESIKIKRSFEAFFLKAYALADSSQDPSCSSTVISLLE 700
Query: 571 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 630
DALKCPSDRLRKGQALNNLGSVYVDCG+LDLAADCY NALKIRHTRAHQGLARVH+L+N+
Sbjct: 701 DALKCPSDRLRKGQALNNLGSVYVDCGKLDLAADCYINALKIRHTRAHQGLARVHYLRND 760
Query: 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 690
K AYEEMTKLI+KARNNASAYEKRSEY DR+LT++DL+MVTQLDPLRVYPYRYRAAVLM
Sbjct: 761 KAAAYEEMTKLIEKARNNASAYEKRSEYGDRDLTKSDLDMVTQLDPLRVYPYRYRAAVLM 820
Query: 691 DSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750
DSHK +EAIAELSRAIAFKADLHLLHLRAAFHEHT DVLGALRDCRAALSVDPN QEMLE
Sbjct: 821 DSHKVDEAIAELSRAIAFKADLHLLHLRAAFHEHTNDVLGALRDCRAALSVDPNHQEMLE 880
Query: 751 LHSRVYSHEP 760
LHSRV S EP
Sbjct: 881 LHSRVNSQEP 890
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|70780055|gb|AAZ08351.1| ethylene overproducer-like 1 [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/370 (84%), Positives = 340/370 (91%)
Query: 391 CVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 450
C L ++Y A +AILTL PDYR+FEGRVAASQL L+REH++NWT ADCWLQLYD
Sbjct: 517 CFYLALEDYQLAICDIQAILTLCPDYRVFEGRVAASQLRTLLREHVENWTEADCWLQLYD 576
Query: 451 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 510
RWSSVDDIGSLSVIYQMLESDA KGVLYFRQSLLLLRLNCP+AAMRSLQLARQH++S+HE
Sbjct: 577 RWSSVDDIGSLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPDAAMRSLQLARQHSSSEHE 636
Query: 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLE 570
RLVYEGWILYDT HCEEGL+KAEESI +KRSFEAFFLKAYALADSS D+SCSSTV+SLLE
Sbjct: 637 RLVYEGWILYDTGHCEEGLQKAEESISIKRSFEAFFLKAYALADSSLDASCSSTVISLLE 696
Query: 571 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 630
DAL+CPSDRLRKGQALNNLGSVYVDCG+LD AADCY NALKIRHTRAHQGLARVHFL+N+
Sbjct: 697 DALRCPSDRLRKGQALNNLGSVYVDCGKLDAAADCYINALKIRHTRAHQGLARVHFLRND 756
Query: 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 690
K AY+EMTKLI+KA+NNASAYEKRSEYCDR+ T+ADLEMVT+LDPLRVYPYRYRAAVLM
Sbjct: 757 KVAAYDEMTKLIEKAKNNASAYEKRSEYCDRDRTKADLEMVTRLDPLRVYPYRYRAAVLM 816
Query: 691 DSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750
D+H++ EAI ELSRAIAFKADLHLLHLRAAFHEH GDV+GALRDCRAALSVDP QEMLE
Sbjct: 817 DNHQDKEAIEELSRAIAFKADLHLLHLRAAFHEHIGDVMGALRDCRAALSVDPKHQEMLE 876
Query: 751 LHSRVYSHEP 760
LHSRV S EP
Sbjct: 877 LHSRVNSQEP 886
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350539533|ref|NP_001234175.1| ethylene-overproducer1-like protein [Solanum lycopersicum] gi|78707376|gb|ABB46489.1| ethylene-overproducer1-like protein [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/370 (83%), Positives = 339/370 (91%)
Query: 391 CVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 450
C L ++Y A +AILTL P+YR+FEGRVAASQL L+REH++NWT AD WLQLYD
Sbjct: 517 CFYLALEDYQLAICDIQAILTLCPEYRVFEGRVAASQLRTLLREHVENWTEADWWLQLYD 576
Query: 451 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 510
RWSSVDDIGSLSVIYQMLESDA KGVLYFRQSLLLLRLNCP+AAMRSLQLARQH++S+HE
Sbjct: 577 RWSSVDDIGSLSVIYQMLESDAAKGVLYFRQSLLLLRLNCPDAAMRSLQLARQHSSSEHE 636
Query: 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLE 570
RLVYEGWILYDT HCEEGL+KAEESI +KRSFEAFFLKAYALADSS D+SCSSTV+SLLE
Sbjct: 637 RLVYEGWILYDTGHCEEGLQKAEESISIKRSFEAFFLKAYALADSSLDASCSSTVISLLE 696
Query: 571 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 630
DAL+CPSDRLRKGQALNNLGSVYVDCG+LD AADCY NALKIRHTRAHQGLARVHFL+N+
Sbjct: 697 DALRCPSDRLRKGQALNNLGSVYVDCGKLDAAADCYINALKIRHTRAHQGLARVHFLRND 756
Query: 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 690
K AY+EMTKLI+KA+NNASAY+KRSEYCDR+ T+ADLEMVT+LDPLRVYPYRYRAAVLM
Sbjct: 757 KVAAYDEMTKLIEKAKNNASAYQKRSEYCDRDRTKADLEMVTRLDPLRVYPYRYRAAVLM 816
Query: 691 DSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750
D+HK+ EAI ELSRAIAFKADLHLLHLRAAFHEH GDV+GALRDCRAALSVDP QEMLE
Sbjct: 817 DNHKDKEAIEELSRAIAFKADLHLLHLRAAFHEHIGDVMGALRDCRAALSVDPKHQEMLE 876
Query: 751 LHSRVYSHEP 760
LHSRV S EP
Sbjct: 877 LHSRVNSQEP 886
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414591612|tpg|DAA42183.1| TPA: hypothetical protein ZEAMMB73_352805 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 309/395 (78%), Positives = 342/395 (86%), Gaps = 7/395 (1%)
Query: 373 LESAETDRQRLLAFHQL-------GCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAA 425
+E+A + R+L F + C L ++Y A +AILTL+PDYRM GRVAA
Sbjct: 493 VEAALMEINRILGFKLVLECLELRFCCYLALEDYRAALCDVQAILTLAPDYRMIGGRVAA 552
Query: 426 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL 485
QL MLV E+++ WT ADCW+QLYDRWSSVDDIGSLSVIYQMLESD KGVLYFRQSLLL
Sbjct: 553 KQLRMLVLENVEQWTAADCWMQLYDRWSSVDDIGSLSVIYQMLESDTAKGVLYFRQSLLL 612
Query: 486 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 545
LRLNCPEAAMRSLQLAR+HAASDHERLVYEGWILYDT HCEEGL+KAE SI ++RSFEAF
Sbjct: 613 LRLNCPEAAMRSLQLAREHAASDHERLVYEGWILYDTGHCEEGLQKAEASIAIQRSFEAF 672
Query: 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADC 605
FLKAYALADSS D S S+TVVSLLEDAL+CPSDRLRKGQALNNLGSVYVDCG+LDLAA+C
Sbjct: 673 FLKAYALADSSLDPSTSATVVSLLEDALRCPSDRLRKGQALNNLGSVYVDCGKLDLAAEC 732
Query: 606 YSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTR 665
Y NALKI HTRAHQGLARVHFL+NN+ AY+EMTKLI+KARNNASAYEKRSEYCDRELT+
Sbjct: 733 YINALKIGHTRAHQGLARVHFLRNNRAGAYDEMTKLIEKARNNASAYEKRSEYCDRELTK 792
Query: 666 ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHT 725
DL+MVT+LDPLRVYPYRYRAAVLMD+HKE EAIAEL++AIAFKADL+LLHLRAAFHEH
Sbjct: 793 TDLQMVTKLDPLRVYPYRYRAAVLMDNHKEKEAIAELTKAIAFKADLNLLHLRAAFHEHV 852
Query: 726 GDVLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 760
GDV AL+DCRAALSVDPN QEMLELH RV S EP
Sbjct: 853 GDVSSALQDCRAALSVDPNHQEMLELHHRVNSQEP 887
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357156332|ref|XP_003577420.1| PREDICTED: ETO1-like protein 1-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 307/395 (77%), Positives = 345/395 (87%), Gaps = 7/395 (1%)
Query: 373 LESAETDRQRLLAFHQL-------GCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAA 425
+E+A + R+L F + C L ++Y A +AILTL+PDYRM GRVAA
Sbjct: 494 VEAALMEINRILGFKLVLECLELRFCCYLALEDYRAALCDVQAILTLAPDYRMIGGRVAA 553
Query: 426 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL 485
QL MLV E+++ WT ADCW+QLYDRWSSVDDIGSLSVIYQMLESDA KGVLYFRQSLLL
Sbjct: 554 KQLRMLVMENVEQWTTADCWMQLYDRWSSVDDIGSLSVIYQMLESDAAKGVLYFRQSLLL 613
Query: 486 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 545
LRLNCPEAAMRSLQLAR+HAAS HERLVYEGWILYDT HCEEGL+KAE SI ++RSFEAF
Sbjct: 614 LRLNCPEAAMRSLQLAREHAASQHERLVYEGWILYDTGHCEEGLQKAEASIAIQRSFEAF 673
Query: 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADC 605
FLKAYALADSS + S S+TVVSLLEDAL+CPSDRLRKGQALNNLGSVYVDCG+LDLAA+C
Sbjct: 674 FLKAYALADSSLEPSTSATVVSLLEDALRCPSDRLRKGQALNNLGSVYVDCGKLDLAAEC 733
Query: 606 YSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTR 665
Y NALKI HTRAHQGLARVHFL+NN+T A+EEMTKLI+KAR+NASAYEKRSEYCDR+LT+
Sbjct: 734 YINALKIGHTRAHQGLARVHFLRNNRTGAFEEMTKLIEKARSNASAYEKRSEYCDRDLTK 793
Query: 666 ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHT 725
ADL+MVT+LDPLRVYPYRYRAAVLMD+HKE +AI+EL++AIAFKADL+LLHLRAAFHEH
Sbjct: 794 ADLQMVTKLDPLRVYPYRYRAAVLMDNHKEKDAISELTKAIAFKADLNLLHLRAAFHEHV 853
Query: 726 GDVLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 760
GD+ GALRDCRAALSVDPN QEMLELH RV S EP
Sbjct: 854 GDISGALRDCRAALSVDPNHQEMLELHHRVNSQEP 888
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242068971|ref|XP_002449762.1| hypothetical protein SORBIDRAFT_05g022780 [Sorghum bicolor] gi|241935605|gb|EES08750.1| hypothetical protein SORBIDRAFT_05g022780 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 308/395 (77%), Positives = 342/395 (86%), Gaps = 7/395 (1%)
Query: 373 LESAETDRQRLLAFHQL-------GCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAA 425
+E+A + R+L F + C L ++Y A +AILTL+PDYRM GRVAA
Sbjct: 496 VEAALMEINRILGFKLVLECLELRFCCYLALEDYRAALCDVQAILTLAPDYRMIGGRVAA 555
Query: 426 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL 485
QL MLV E+++ WT ADCW+QLYDRWSSVDDIGSLSVIYQMLESD KGVLYFRQSLLL
Sbjct: 556 KQLRMLVLENVEQWTAADCWMQLYDRWSSVDDIGSLSVIYQMLESDNAKGVLYFRQSLLL 615
Query: 486 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 545
LRLNCPEAAMRSLQLAR+HA+SDHERLVYEGWILYDT HCEEGL+KAE SI ++RSFEAF
Sbjct: 616 LRLNCPEAAMRSLQLAREHASSDHERLVYEGWILYDTGHCEEGLQKAEASIAIQRSFEAF 675
Query: 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADC 605
FLKAYALADSS D S S+TVVSLLEDAL+CPSDRLRKGQALNNLGSVYVDCG+LDLAA+C
Sbjct: 676 FLKAYALADSSLDPSTSATVVSLLEDALRCPSDRLRKGQALNNLGSVYVDCGKLDLAAEC 735
Query: 606 YSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTR 665
Y NALKI HTRAHQGLARVHFL+NN+ AY+EMTKLI+KARNNASAYEKRSEYCDRELT+
Sbjct: 736 YINALKIGHTRAHQGLARVHFLRNNRAGAYDEMTKLIEKARNNASAYEKRSEYCDRELTK 795
Query: 666 ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHT 725
DL+MVT+LDPLRVYPYRYRAAVLMD+HKE EAIAEL++AIAFKADL+LLHLRAAFHEH
Sbjct: 796 TDLQMVTKLDPLRVYPYRYRAAVLMDNHKEKEAIAELTKAIAFKADLNLLHLRAAFHEHI 855
Query: 726 GDVLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 760
GD+ ALRDCRAALSVDPN QEMLELH RV S EP
Sbjct: 856 GDISSALRDCRAALSVDPNHQEMLELHHRVNSQEP 890
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115486045|ref|NP_001068166.1| Os11g0585900 [Oryza sativa Japonica Group] gi|113645388|dbj|BAF28529.1| Os11g0585900, partial [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 298/354 (84%), Positives = 328/354 (92%)
Query: 407 EAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466
+AILTL+PDYRM GRV+A QL MLV E+++ WT ADCW+QLYDRWSSVDDIGSLSVIYQ
Sbjct: 504 QAILTLAPDYRMIGGRVSAKQLRMLVMENVEQWTTADCWMQLYDRWSSVDDIGSLSVIYQ 563
Query: 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 526
MLESDA KGVLYFRQSLLLLRLNCPEAAMRSLQLAR+HAAS HE+LVYEGWILYDT HCE
Sbjct: 564 MLESDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLAREHAASQHEQLVYEGWILYDTGHCE 623
Query: 527 EGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQAL 586
EGL+KAE SI ++RSFEAFFLKAYALADSS D S S+TVVSLLEDAL+CPSDRLRKGQAL
Sbjct: 624 EGLQKAEASIAIQRSFEAFFLKAYALADSSLDPSTSATVVSLLEDALRCPSDRLRKGQAL 683
Query: 587 NNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646
NNLGSVYVDCG+LDLAA+CY NALKI HTRAHQGLARVHFL+N++T AYEEMTKLI+KAR
Sbjct: 684 NNLGSVYVDCGKLDLAAECYINALKIGHTRAHQGLARVHFLRNSRTGAYEEMTKLIEKAR 743
Query: 647 NNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 706
+NASAYEKRSEYCDRELT++DL+MVT+LDPLRVYPYRYRAAVLMD+HKE EAIAEL++AI
Sbjct: 744 SNASAYEKRSEYCDRELTKSDLQMVTKLDPLRVYPYRYRAAVLMDNHKEKEAIAELTKAI 803
Query: 707 AFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 760
AFKADL+LLHLRAAFHEH GD+ ALRDCRAALSVDPN QEMLELH RV S EP
Sbjct: 804 AFKADLNLLHLRAAFHEHVGDISSALRDCRAALSVDPNHQEMLELHHRVNSQEP 857
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 760 | ||||||
| TAIR|locus:2132402 | 888 | EOL1 "ETO1-like 1" [Arabidopsi | 0.486 | 0.416 | 0.778 | 1.7e-297 | |
| TAIR|locus:2074343 | 959 | ETO1 "ETHYLENE OVERPRODUCER 1" | 0.476 | 0.377 | 0.629 | 8.5e-190 | |
| WB|WBGene00003132 | 788 | mat-1 [Caenorhabditis elegans | 0.231 | 0.223 | 0.276 | 0.00055 |
| TAIR|locus:2132402 EOL1 "ETO1-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1510 (536.6 bits), Expect = 1.7e-297, Sum P(2) = 1.7e-297
Identities = 288/370 (77%), Positives = 317/370 (85%)
Query: 391 CVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 450
C+ L +Y+ A +A LTL PDYRMF+G+VA QL LV EH++NWT ADCW+QLY+
Sbjct: 519 CLYLGMDDYEAALRDIQAALTLCPDYRMFDGKVAGRQLQTLVYEHVENWTTADCWMQLYE 578
Query: 451 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSXXXXXXNCPEAAMRSLQLARQHAASDHE 510
+WS+VDDIGSLSVIYQMLESDA KGVLYFRQS NCPEAAMRSLQLAR+HA+SDHE
Sbjct: 579 KWSNVDDIGSLSVIYQMLESDACKGVLYFRQSLLLLRLNCPEAAMRSLQLAREHASSDHE 638
Query: 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAXXXXXXXXXXXXXXLLE 570
RLVYEGWILYDT HCEEGL+KA+ESI +KRSFEA+FL+AYALA LLE
Sbjct: 639 RLVYEGWILYDTGHCEEGLQKAKESIGIKRSFEAYFLQAYALAESSLDPSSSSTVVSLLE 698
Query: 571 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 630
DALKCPSDRLRKGQALNNLGSVYVDC +LDLAADCY NALK+RHTRAHQGLARVHFL+N+
Sbjct: 699 DALKCPSDRLRKGQALNNLGSVYVDCEKLDLAADCYINALKVRHTRAHQGLARVHFLRND 758
Query: 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 690
K AYEEMT+LI+KA+NNASAYEKRSEYCDREL ++DLEMVT+LDPLRVYPYRYRAAVLM
Sbjct: 759 KAAAYEEMTRLIEKAQNNASAYEKRSEYCDRELAKSDLEMVTRLDPLRVYPYRYRAAVLM 818
Query: 691 DSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750
DS KE EAI ELSRAIAFKADLHLLHLRAAFHEH GDV ALRDCRAALSVDPN QEMLE
Sbjct: 819 DSRKEREAITELSRAIAFKADLHLLHLRAAFHEHIGDVTSALRDCRAALSVDPNHQEMLE 878
Query: 751 LHSRVYSHEP 760
LHSRV SHEP
Sbjct: 879 LHSRVNSHEP 888
|
|
| TAIR|locus:2074343 ETO1 "ETHYLENE OVERPRODUCER 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1185 (422.2 bits), Expect = 8.5e-190, Sum P(3) = 8.5e-190
Identities = 229/364 (62%), Positives = 278/364 (76%)
Query: 397 KEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 456
++Y+ A A+LTL P++ MF ++ + L+R W+ ADCW+QLYDRWSSVD
Sbjct: 594 EDYEGALKDIRALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWMQLYDRWSSVD 653
Query: 457 DIGSLSVIYQMLESDAPKGVLYFRQSXXXXXXNCPEAAMRSLQLARQHAASDHERLVYEG 516
DIGSL+V++ ML +D K +L FRQS NC +AAMRSL+LAR H+ S+HERLVYEG
Sbjct: 654 DIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKSEHERLVYEG 713
Query: 517 WILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAXXXXXXXXXXXXXXLLEDALKCP 576
WILYDT H EE L KAEESI ++RSFEAFFLKAYALA LL++ALKCP
Sbjct: 714 WILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQEALKCP 773
Query: 577 SDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYE 636
SD LRKGQALNNLGSVYVDC +LDLAADCY+NAL I+HTRAHQGLARV+ LKN + AY+
Sbjct: 774 SDGLRKGQALNNLGSVYVDCEKLDLAADCYTNALTIKHTRAHQGLARVYHLKNQRKAAYD 833
Query: 637 EMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696
EMTKLI+KA+NNASAYEKRSEYCDRE+ ++DL + TQLDPLR YPYRYRAAVLMD HKE+
Sbjct: 834 EMTKLIEKAQNNASAYEKRSEYCDREMAQSDLCLATQLDPLRTYPYRYRAAVLMDDHKES 893
Query: 697 EAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756
EAI ELSRAI+FK DL LLHLRAAF++ G+ A++DC AAL +DP + LEL+ +
Sbjct: 894 EAIDELSRAISFKPDLQLLHLRAAFYDSMGEGASAIKDCEAALCIDPGHADTLELYHK-- 951
Query: 757 SHEP 760
+ EP
Sbjct: 952 AREP 955
|
|
| WB|WBGene00003132 mat-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 124 (48.7 bits), Expect = 0.00055, P = 0.00055
Identities = 52/188 (27%), Positives = 79/188 (42%)
Query: 581 RKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEM 638
R A LG + +LD AA + +AL + R RA GL VH K TA +
Sbjct: 593 RFAYAYTLLGHELIVQDELDKAAGSFRSALLLSPRDYRAWYGLGLVHLKKEQNLTALTNI 652
Query: 639 TKLIK-KARNNA-----SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDS 692
K + N A S E++ D L D + L+PL V R+ +L ++
Sbjct: 653 QKAVNINPTNRAMLCTLSQIEQQRGQIDTALVLIDRALT--LNPLDVACRFNRSRLLFEA 710
Query: 693 HKENEAIAELSRAIAFKAD-LHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 751
++ E + EL + A D + HL A H G+ AL + A +DP ++ +
Sbjct: 711 NRNEECLVELDKLKASSPDEAFIFHLLARVHRRMGNTHLALLNYSWAAELDPRGEQNIT- 769
Query: 752 HSRVYSHE 759
S V + E
Sbjct: 770 DSNVINRE 777
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 760 725 0.00086 121 3 11 22 0.50 33
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 623 (66 KB)
Total size of DFA: 392 KB (2191 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 67.68u 0.13s 67.81t Elapsed: 00:00:06
Total cpu time: 67.68u 0.13s 67.81t Elapsed: 00:00:06
Start: Tue May 21 05:17:51 2013 End: Tue May 21 05:17:57 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZQX6 | ETOL1_ARATH | No assigned EC number | 0.8216 | 0.4815 | 0.4121 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 760 | |||
| smart00225 | 97 | smart00225, BTB, Broad-Complex, Tramtrack and Bric | 2e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.002 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.002 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.003 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.004 |
| >gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFS 242
+V + +K + AA S F A+ + F ES +I L + +SP R + +F
Sbjct: 1 DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDD--VSPEDFRALLNFL 58
Query: 243 VTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASL 281
TG L+ + + E+L A+ L + C+ L L
Sbjct: 59 YTGKLD-LPEENVEELLELADYLQIPGLVELCEEFLLKL 96
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
+AL NLG++Y G D A + Y AL++ + A+ LA ++ A E+ K
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 642 IKKARNNASAY 652
++ +NA AY
Sbjct: 61 LELDPDNAKAY 71
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 4e-04
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTT-AYEEMTK 640
+AL NLG+ G D A + Y AL++ + A+ LA + A E++ K
Sbjct: 4 EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63
Query: 641 LIK 643
++
Sbjct: 64 ALE 66
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 5e-04
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 682 YRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTG-DVLGALRDCRAAL 739
+ L +EAI +A+ D + A + G D AL D AL
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 740 SVDP 743
+DP
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKL 641
A NL + Y G+ + A + Y AL++ + +A+ L ++ A E K
Sbjct: 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
Query: 642 IKKARN 647
++ N
Sbjct: 95 LELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 16/198 (8%)
Query: 569 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHF 626
E AL D A NL + + G D A + L I ++ RA LA ++
Sbjct: 488 FEKALSIEPDFF---PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544
Query: 627 LKNNK-------TTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRV 679
N+ A E + I+ A A Y + + + L + D
Sbjct: 545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ-LKKALAILNEAADAAPDSPEA 603
Query: 680 YPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAF-HEHTGDVLGALRDCRAA 738
+ RA L N+A++ + +A + D L L A + + A+ + A
Sbjct: 604 WLMLGRAQ-LAAG-DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA 661
Query: 739 LSVDPNDQEMLELHSRVY 756
L + P++ E +++
Sbjct: 662 LELKPDNTEAQIGLAQLL 679
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.003
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 651 AYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710
Y K +Y + E +LDP Y AA K EA+ + +A+
Sbjct: 9 LYYKLGDY---DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65
Query: 711 DLHLLHLRAAF-HEHTGDVLGALRDCRAALSVDPN 744
D + + G AL AL +DPN
Sbjct: 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615
+AL NLG+ Y+ G+ D A + Y AL++
Sbjct: 2 KALYNLGNAYLKLGKYDEALEYYEKALELNPN 33
|
Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 760 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.93 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.87 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.84 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.81 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.8 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.8 | |
| KOG4350 | 620 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.79 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.75 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.75 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.73 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.73 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.73 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.72 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| PF00651 | 111 | BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( | 99.72 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.71 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.69 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.69 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.69 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.68 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.67 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.66 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.66 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.66 | |
| smart00225 | 90 | BTB Broad-Complex, Tramtrack and Bric a brac. Doma | 99.66 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.65 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.64 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.64 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.63 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.62 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.62 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.62 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| KOG2075 | 521 | consensus Topoisomerase TOP1-interacting protein B | 99.61 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.61 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.59 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.59 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.59 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.58 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.56 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.55 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.51 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.46 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.45 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.45 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.44 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.42 | |
| KOG4591 | 280 | consensus Uncharacterized conserved protein, conta | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.37 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.36 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.36 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.36 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.32 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.3 | |
| KOG4682 | 488 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.3 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.29 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.29 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.29 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.28 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.28 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.22 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.21 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.17 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.16 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.14 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.14 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.14 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.12 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.12 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.11 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.1 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.07 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.03 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.01 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.01 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.96 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.96 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.95 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.93 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.93 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.92 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.89 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.89 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.85 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.82 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.82 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.8 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.8 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.78 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.77 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.76 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.75 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.75 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.75 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.73 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.73 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.72 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.71 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.7 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.7 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.7 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.7 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.68 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.67 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.65 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.65 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.61 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.61 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.59 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.57 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.56 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.56 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.54 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.54 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.48 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.47 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.47 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.46 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.45 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.42 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.41 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.41 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.4 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.38 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.37 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.37 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.36 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.35 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.35 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.34 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.33 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.33 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.31 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.29 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.29 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.27 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.25 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.24 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.22 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.22 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.21 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.19 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.18 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.18 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.16 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.16 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.06 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.03 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.02 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.99 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.99 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.97 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.97 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.95 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.95 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.94 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.93 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.92 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.89 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.89 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.88 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 97.78 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.76 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.66 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 97.61 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.61 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.58 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.57 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.57 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| PF02214 | 94 | BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi | 97.56 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.53 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.47 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.45 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.39 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.39 | |
| KOG2716 | 230 | consensus Polymerase delta-interacting protein PDI | 97.34 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.33 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.32 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.3 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.29 | |
| KOG3473 | 112 | consensus RNA polymerase II transcription elongati | 97.28 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.26 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.23 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.2 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.2 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.19 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.17 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.11 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.08 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.07 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.07 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.06 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.05 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.02 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.01 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.01 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.97 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.97 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.97 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.94 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.94 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.93 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.85 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.83 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 96.77 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 96.67 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.64 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.59 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.58 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.49 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.45 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.44 | |
| KOG2838 | 401 | consensus Uncharacterized conserved protein, conta | 96.43 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.39 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.36 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.35 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.24 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.21 | |
| KOG1987 | 297 | consensus Speckle-type POZ protein SPOP and relate | 96.11 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.1 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.02 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.95 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.92 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 95.91 | |
| smart00512 | 104 | Skp1 Found in Skp1 protein family. Family of Skp1 | 95.84 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 95.83 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.83 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 95.78 | |
| PF11822 | 317 | DUF3342: Domain of unknown function (DUF3342); Int | 95.69 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 95.56 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.56 | |
| KOG2838 | 401 | consensus Uncharacterized conserved protein, conta | 95.49 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.48 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.48 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 95.41 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.39 | |
| KOG1665 | 302 | consensus AFH1-interacting protein FIP2, contains | 95.28 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.28 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.26 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.12 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.1 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.97 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.95 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.89 | |
| KOG2714 | 465 | consensus SETA binding protein SB1 and related pro | 94.86 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.86 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 94.72 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.6 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.59 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.56 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 94.41 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.39 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.34 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.25 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.01 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.99 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 93.78 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.77 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 93.69 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.56 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 93.48 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 93.38 | |
| KOG1724 | 162 | consensus SCF ubiquitin ligase, Skp1 component [Po | 93.34 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.26 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 93.24 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 93.11 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 93.02 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.01 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 92.95 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.9 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.89 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 92.74 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 92.72 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.68 | |
| PF03931 | 62 | Skp1_POZ: Skp1 family, tetramerisation domain; Int | 92.59 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.43 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.39 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 92.17 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 91.95 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.95 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 91.85 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.7 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.47 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 91.29 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 91.26 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 91.12 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 91.12 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.11 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.05 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.93 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 90.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 90.81 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.37 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.24 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 89.75 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.55 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.33 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.21 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.95 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 88.77 | |
| KOG3840 | 438 | consensus Uncharaterized conserved protein, contai | 88.12 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 87.93 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 87.66 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 87.57 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 87.54 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 87.25 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 86.91 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 86.89 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 86.64 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 86.47 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 85.93 | |
| PF01466 | 78 | Skp1: Skp1 family, dimerisation domain; InterPro: | 85.67 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 85.24 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 85.17 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 84.73 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.72 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 83.91 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 83.01 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 82.32 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.23 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 82.03 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 82.02 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 81.91 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 81.83 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 81.44 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 81.41 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 81.17 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 80.76 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.14 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 80.14 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=312.42 Aligned_cols=354 Identities=15% Similarity=0.121 Sum_probs=289.3
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccc-------
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW------- 452 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~------- 452 (760)
.+-+.+|-.+|+++-++|++++|+..|+.++++.|++. ++|..+|.++...|+.+.|...+...-+.
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fi------da~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca 186 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFI------DAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA 186 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhh------HHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh
Confidence 44455566666666666666666666666666666663 66666666666666666665544111000
Q ss_pred --------cccC-CcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Q 004336 453 --------SSVD-DIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 523 (760)
Q Consensus 453 --------~~~~-d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g 523 (760)
.+.+ -.++...|.++++.+|.-+.+|.++|-++..+|+...|+..|++|++++|...++|++||.+|...+
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 0000 0012233588888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhc--cH--HHHHHHHHHHHHHcCC
Q 004336 524 HCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL--RK--GQALNNLGSVYVDCGQ 598 (760)
Q Consensus 524 ~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l--~~--~~a~~~Lg~~y~~~g~ 598 (760)
.+++|+..|.+++.+.|++ .++-++|.+|.++ |.++-|+..|++++ ++ .++++++|..+-+.|+
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq-----------G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ-----------GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS 335 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEecc-----------ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc
Confidence 8888888888888888888 8888888888888 99999999999994 44 8999999999999999
Q ss_pred HHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHH
Q 004336 599 LDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVT 672 (760)
Q Consensus 599 ~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal 672 (760)
..+|.++|.+++...|. ++.++||.+|..+|++++|...|.++++..|..+.+.+.++ ..|++++|+..|++++
T Consensus 336 V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999997655 99999999999999999999999999999996555544432 4599999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 673 QLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 673 ~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
+++|..+.++.++|..|..+|+.+.|+..|.+|+.++|....++.. +.+|.-.|+..+|+..|+++|+++|+.+++..
T Consensus 416 rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 416 RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 9999999999999999999999999999999999999999999855 88888889999999999999999999998753
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=310.00 Aligned_cols=351 Identities=17% Similarity=0.119 Sum_probs=253.4
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccc-------------
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS------------- 454 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~------------- 454 (760)
.++.++++..+++.....-..+++.+|... +++.++|.++...|++..|+.++...-....
T Consensus 87 ll~ai~~q~~r~d~s~a~~~~a~r~~~q~a------e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al 160 (966)
T KOG4626|consen 87 LLSAIFFQGSRLDKSSAGSLLAIRKNPQGA------EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAAL 160 (966)
T ss_pred eehhhhhcccchhhhhhhhhhhhhccchHH------HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHH
Confidence 345556666688888888889999999985 9999999999999999999998843222111
Q ss_pred ---cCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 004336 455 ---VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 531 (760)
Q Consensus 455 ---~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~ 531 (760)
.+...+...+..+++++|+...+...+|.++...|+..+|..+|.+|++.+|..+-+|.+||.++..+|+...|+..
T Consensus 161 ~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred HhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHH
Confidence 01122344566666666666666666666666677777777777777777776677777777777777777777777
Q ss_pred HHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh--ccH--HHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 532 AEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--LRK--GQALNNLGSVYVDCGQLDLAADCY 606 (760)
Q Consensus 532 ~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--l~~--~~a~~~Lg~~y~~~g~~~eA~~~~ 606 (760)
|+++++++|++ ++|+++|.+|.+. +.+++|+.+|.++ +++ +.++.++|.+|..+|..+-|++.|
T Consensus 241 y~eAvkldP~f~dAYiNLGnV~ke~-----------~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 241 YEEAVKLDPNFLDAYINLGNVYKEA-----------RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred HHHhhcCCCcchHHHhhHHHHHHHH-----------hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHH
Confidence 77777777777 7777777777776 7777777777777 333 677777777777777777777777
Q ss_pred HHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH----HhcCCHHHHHHHHHHHHhhCCCChH
Q 004336 607 SNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR----SEYCDRELTRADLEMVTQLDPLRVY 680 (760)
Q Consensus 607 ~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~----~~~~~~~~A~~~l~kal~l~p~~~~ 680 (760)
+++++..|. +++.+||.++-..|+..+|.++|.+++...|+.+...+.+ .+.|..++|...|.++++..|..+.
T Consensus 310 kral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa 389 (966)
T KOG4626|consen 310 KRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA 389 (966)
T ss_pred HHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh
Confidence 777776665 7777777777777777777777777777777655544433 2446777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 681 PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 681 ~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
+..+||.+|.++|++++|+..|+.++.+.|.....+.. +..|..+|+...|+++|.+|+.++|..+++..-+..+
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASI 465 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHH
Confidence 77777777777777777777777777777777766633 6777777777777777777777777777665544433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=271.09 Aligned_cols=248 Identities=14% Similarity=0.115 Sum_probs=175.3
Q ss_pred CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchh
Q 004336 489 NCPEAAMRSLQLARQH---AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSST 564 (760)
Q Consensus 489 g~~~~Ai~~l~kal~~---~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~ 564 (760)
+++++|++.|+++++. .|....++..+|.++..+|++++|+..|++++.++|++ .++..+|.++...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~--------- 378 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLEL--------- 378 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC---------
Confidence 4556666666666654 35566677777777777888888888888888877777 7777777777776
Q ss_pred hhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHH
Q 004336 565 VVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEM 638 (760)
Q Consensus 565 ~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l 638 (760)
+.+++|+..+.+++.. +.+++.+|.++...|++++|+.+|+++++++|. .++.++|.++...|++++|+..+
T Consensus 379 --g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 379 --GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777766332 677777888888888888888888888777665 66777788888888888888888
Q ss_pred HHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHH------HHHHHHH-HHcCCHHHHHHHHHHHHH
Q 004336 639 TKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPY------RYRAAVL-MDSHKENEAIAELSRAIA 707 (760)
Q Consensus 639 ~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~------~~La~~~-~~~g~~~eAi~~l~kal~ 707 (760)
++++...|..+..+..++ ..|++++|+..|+++++++|.....+ ...+.++ ...|++++|+..+++++.
T Consensus 457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888877777665554432 34777888888888887777643322 2223333 335778888888888887
Q ss_pred cCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 004336 708 FKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 747 (760)
Q Consensus 708 ~~p~~~~~~l-~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~ 747 (760)
++|++...+. .+.++...|++++|+..|++++++.+...+
T Consensus 537 l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 537 IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 7777765553 377777778888888888888777776544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-26 Score=265.08 Aligned_cols=318 Identities=11% Similarity=-0.023 Sum_probs=286.4
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
++..|++++|+..++.++...|+++ .+++.+|.+....|++++|+..+ ++++..+|
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~------~~l~~l~~~~l~~g~~~~A~~~l------------------~~~l~~~P 107 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGR------DLLRRWVISPLASSQPDAVLQVV------------------NKLLAVNV 107 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCch------hHHHHHhhhHhhcCCHHHHHHHH------------------HHHHHhCC
Confidence 3444599999999999999999996 99999999999999999999999 99999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYA 551 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~ 551 (760)
+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..+++++...|+. .++..++.
T Consensus 108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~- 186 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS- 186 (656)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 66665543
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHH
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRK-----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARV 624 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~ 624 (760)
+... +++++|+..+...+.. ......++.++...|++++|+..|+++++.+|. .++..+|.+
T Consensus 187 l~~~-----------g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~ 255 (656)
T PRK15174 187 FLNK-----------SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLA 255 (656)
T ss_pred HHHc-----------CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 5555 8889999888876332 334456788999999999999999999997766 889999999
Q ss_pred HHHcCCHHH----HHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 004336 625 HFLKNNKTT----AYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696 (760)
Q Consensus 625 ~~~~g~~~~----A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~ 696 (760)
+...|++++ |+..++++++..|+...++..++ ..|++++|+..++++++++|+++.++..+|.++.+.|+++
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999986 89999999999998877766553 4589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 004336 697 EAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 697 eAi~~l~kal~~~p~~~~~~l-~a~~~~~~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
+|+..|++++...|+...+.. .+.++...|++++|+..|+++++.+|++.
T Consensus 336 eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 336 AASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999876554 47788889999999999999999998854
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-24 Score=263.91 Aligned_cols=356 Identities=15% Similarity=0.100 Sum_probs=315.4
Q ss_pred CChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHH
Q 004336 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 440 (760)
Q Consensus 361 ~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~ 440 (760)
..+.+...+++.... .+....++..++.++...|++++|+.+|++++..+|.+. ..+..++..+...|+++
T Consensus 514 ~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 514 NPDDAIQRFEKVLTI---DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI------EPALALAQYYLGKGQLK 584 (899)
T ss_pred CHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch------hHHHHHHHHHHHCCCHH
Confidence 334444555554443 233456677888888888899999999999999988885 77888889999999999
Q ss_pred HHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004336 441 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 520 (760)
Q Consensus 441 ~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~ 520 (760)
+|..++ ++++...|.+...++.+|.++...|++++|+..|+++++..|.++.++..+|.++.
T Consensus 585 ~A~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 585 KALAIL------------------NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYA 646 (899)
T ss_pred HHHHHH------------------HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999888 89999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHH
Q 004336 521 DTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVD 595 (760)
Q Consensus 521 ~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~ 595 (760)
..|++++|+..|+++++.+|++ .++..++.++... +.+++|...+...... ...+..+|.++..
T Consensus 647 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA-----------KRTESAKKIAKSLQKQHPKAALGFELEGDLYLR 715 (899)
T ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH
Confidence 9999999999999999999998 9999999999998 8899999988877332 7788899999999
Q ss_pred cCCHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHH
Q 004336 596 CGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEM 670 (760)
Q Consensus 596 ~g~~~eA~~~~~~Al~~~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~k 670 (760)
.|++++|+..|++++...|. ..+..++.++...|++++|...++++++..|++..++..++ ..|+.++|+..|++
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999998776 78889999999999999999999999999998877666553 35999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 671 VTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 671 al~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
+++.+|+++.++..+|.++...|+ .+|+..+++++...|+++..+ ..+.++...|++++|+..|+++++.+|.++++.
T Consensus 796 ~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 874 (899)
T TIGR02917 796 VVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIR 874 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 999999999999999999999999 889999999999999998776 448888889999999999999999999999887
Q ss_pred HHHHHh
Q 004336 750 ELHSRV 755 (760)
Q Consensus 750 ~~~~r~ 755 (760)
..+..+
T Consensus 875 ~~l~~~ 880 (899)
T TIGR02917 875 YHLALA 880 (899)
T ss_pred HHHHHH
Confidence 665544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-29 Score=282.01 Aligned_cols=141 Identities=15% Similarity=0.133 Sum_probs=129.9
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
-++.+|||++++| ++|||||+|||||||||||||++||+|+.+ +|.+...||++++|+.||+|+|||+|. |+.+||+
T Consensus 18 ~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~nV~ 94 (480)
T PHA02790 18 MTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHNVV 94 (480)
T ss_pred hhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-EecccHH
Confidence 3678999988775 589999999999999999999999999965 576632389999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCc
Q 004336 257 EILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND 321 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~ 321 (760)
+||++|++||++.|+++|++||..+| +++||+++..+|..+++..|...|.+++.++|+...+.
T Consensus 95 ~ll~aA~~Lqi~~v~~~C~~fL~~~l-~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~ 158 (480)
T PHA02790 95 NLLRASILTSVEFIIYTCINFILRDF-RKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDD 158 (480)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcc
Confidence 99999999999999999999999999 79999999999999999999999999999999987653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-24 Score=270.04 Aligned_cols=322 Identities=17% Similarity=0.059 Sum_probs=237.4
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
..|..++..|++++|+..|+++++.+|+++ .++..+|.++.+.|++++|+.++ +++
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~------~a~~~Lg~~~~~~g~~~eA~~~l------------------~~A 329 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDS------EALGALGQAYSQQGDRARAVAQF------------------EKA 329 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHH
Confidence 458889999999999999999999999996 89999999999999999999999 999
Q ss_pred HHhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Q 004336 468 LESDAPKGV--------------LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 533 (760)
Q Consensus 468 l~~~p~~~~--------------~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~ 533 (760)
++.+|++.. ....+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus 330 l~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 330 LALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999987643 224568899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-------------HHHHHHHHHHHHHcCCH
Q 004336 534 ESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-------------GQALNNLGSVYVDCGQL 599 (760)
Q Consensus 534 ~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-------------~~a~~~Lg~~y~~~g~~ 599 (760)
++++++|++ .++..++.++... ..++|+..+...... ...+..+|.++...|++
T Consensus 410 ~aL~~~p~~~~a~~~L~~l~~~~------------~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~ 477 (1157)
T PRK11447 410 QALRMDPGNTNAVRGLANLYRQQ------------SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKW 477 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhc------------CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCH
Confidence 999999999 8888888887542 234444443322100 23455677777777777
Q ss_pred HHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH----------------------
Q 004336 600 DLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR---------------------- 655 (760)
Q Consensus 600 ~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~---------------------- 655 (760)
++|+..|+++++.+|. .+++.+|.+|...|++++|+..++++++..|.+...+...
T Consensus 478 ~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~ 557 (1157)
T PRK11447 478 AQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPR 557 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCc
Confidence 7777777777776665 6677777777777777777777777777766544332211
Q ss_pred --------------------------------------------------------HhcCCHHHHHHHHHHHHhhCCCCh
Q 004336 656 --------------------------------------------------------SEYCDRELTRADLEMVTQLDPLRV 679 (760)
Q Consensus 656 --------------------------------------------------------~~~~~~~~A~~~l~kal~l~p~~~ 679 (760)
...|++++|+..|+++++.+|+++
T Consensus 558 ~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~ 637 (1157)
T PRK11447 558 AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA 637 (1157)
T ss_pred hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 112555556666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004336 680 YPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPND 745 (760)
Q Consensus 680 ~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~ 745 (760)
.++..+|.+|...|++++|++.++++++..|++...+.. +.++...|++++|++.|++++...|++
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 666666666666666666666666666655555544432 555555566666666666666555443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-28 Score=279.64 Aligned_cols=147 Identities=21% Similarity=0.324 Sum_probs=141.0
Q ss_pred CCCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhH
Q 004336 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (760)
Q Consensus 176 ~~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v 255 (760)
-..+.+|||++.+++++|+|||+|||||||||++|||++|+|+.+++|.|. ||++.+|+.|++|+|||+|. |+.+||
T Consensus 31 r~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~~~~l~~ll~y~Yt~~i~-i~~~nV 107 (571)
T KOG4441|consen 31 REEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVDPETLELLLDYAYTGKLE-ISEDNV 107 (571)
T ss_pred HHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCCHHHHHHHHHHhhcceEE-echHhH
Confidence 357889999999999999999999999999999999999999999999997 89999999999999999997 999999
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchhh
Q 004336 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVE 326 (760)
Q Consensus 256 ~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~~ 326 (760)
++||.+|++||+..|+++|++||..++ +++||+++..+|+.+++..|...+..++.++|++....++++.
T Consensus 108 q~ll~aA~~lQi~~v~~~C~~fL~~~l-~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~ 177 (571)
T KOG4441|consen 108 QELLEAASLLQIPEVVDACCEFLESQL-DPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLL 177 (571)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhC
Confidence 999999999999999999999999999 7999999999999999999999999999999998887777764
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-24 Score=261.68 Aligned_cols=356 Identities=15% Similarity=0.084 Sum_probs=250.0
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhcccc--------
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWS-------- 453 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~-------- 453 (760)
.+..+..+|.++...|++++|+..|++++..+|++. .++..++.++...|++++|..+++......
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 537 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF------PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAIL 537 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 345677788888888888888888888888888875 777778888888888888887772211100
Q ss_pred --------ccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Q 004336 454 --------SVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 525 (760)
Q Consensus 454 --------~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~ 525 (760)
..+...+...+.+++..+|.+...++.++..+...|++++|+..++++++..|.+...+..+|.++...|++
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 000011233345666666666666666666666666666666666666666666666667777777777777
Q ss_pred HHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHH
Q 004336 526 EEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLD 600 (760)
Q Consensus 526 eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~ 600 (760)
++|+..|+++++.+|++ .++..++.++... +.+++|+..+.+.+.. ..++..++.++...|+++
T Consensus 618 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVM-----------KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 77777777776666666 6666666666666 6666666666665322 566667777777777777
Q ss_pred HHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHH---HHHHhcCCHHHHHHHHHHHHhhC
Q 004336 601 LAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY---EKRSEYCDRELTRADLEMVTQLD 675 (760)
Q Consensus 601 eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~---~~~~~~~~~~~A~~~l~kal~l~ 675 (760)
+|+..++.+.+..|. ..+..+|.++...|++++|+..|++++...|.....+ ......|+.++|...+++++..+
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 777777766664443 5667777888888888888888888888777553222 11234478888888888888888
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 676 PLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 676 p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
|++...+..+|.++...|++++|+..|+++++..|+++..+.. +.++...|+ .+|+..++++++..|+++..+..+..
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 8888888888888888888888888888888888887766533 777777788 77888888888888888877766655
Q ss_pred h
Q 004336 755 V 755 (760)
Q Consensus 755 ~ 755 (760)
+
T Consensus 846 ~ 846 (899)
T TIGR02917 846 L 846 (899)
T ss_pred H
Confidence 4
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-27 Score=270.55 Aligned_cols=144 Identities=13% Similarity=0.258 Sum_probs=133.8
Q ss_pred CCccceeEEEEec-CeEeehhHHHHhcCCHHHHhhccCCCCCCc-cceeEecCCCCCHHHHHHHHhccccCccCCCChhh
Q 004336 177 GDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGSFMESL-CEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (760)
Q Consensus 177 ~~~~~~dv~~~~~-~~~~~~hr~~la~~s~yf~amf~~~~~e~~-~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~ 254 (760)
.++.+|||+|+|+ |++|||||+||||+|+||+|||+++|+|+. +++|+|+ ||++++|+.||+|+|||+ |+++|
T Consensus 21 ~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~---i~~~n 95 (557)
T PHA02713 21 DDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH---ISSMN 95 (557)
T ss_pred hCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHHHhcCCC---CCHHH
Confidence 4678999999998 899999999999999999999999999875 7899997 899999999999999996 57999
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchhh
Q 004336 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVE 326 (760)
Q Consensus 255 v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~~ 326 (760)
|++||.+|++||++.|+++|++||..++ +++||+++..++..+.+..|...|.+++.++|+.....++|..
T Consensus 96 v~~ll~aA~~lqi~~l~~~C~~~l~~~l-~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~ 166 (557)
T PHA02713 96 VIDVLKCADYLLIDDLVTDCESYIKDYT-NHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKK 166 (557)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHhhC-CccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhh
Confidence 9999999999999999999999999999 7999999999888888888999999999999998777777653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-24 Score=248.84 Aligned_cols=333 Identities=11% Similarity=0.036 Sum_probs=278.3
Q ss_pred CChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHH
Q 004336 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 440 (760)
Q Consensus 361 ~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~ 440 (760)
..+.+...+++.+..... ...+..+|.+|+..|++++|+..++++++++|++. .+++.+|.++...|+++
T Consensus 142 ~~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~------~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 142 DFNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS------KALNRRANAYDGLGKYA 211 (615)
T ss_pred CHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHcCCHH
Confidence 344555555554443321 34678889999999999999999999999999995 99999999999999999
Q ss_pred HHHHHHhhhccc-----------------------------ccc------------------------------------
Q 004336 441 IADCWLQLYDRW-----------------------------SSV------------------------------------ 455 (760)
Q Consensus 441 ~A~~~l~l~~~~-----------------------------~~~------------------------------------ 455 (760)
+|+..+...... ...
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 997543210000 000
Q ss_pred -----------------CCcCcHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 004336 456 -----------------DDIGSLSVIYQMLES---DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 515 (760)
Q Consensus 456 -----------------~d~~sl~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~L 515 (760)
....++..+++++.. .|....++..+|.++...|++++|+..|+++++++|.+..++..+
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l 371 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKR 371 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 000122335556654 477888999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc--H--HHHHHHHH
Q 004336 516 GWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR--K--GQALNNLG 590 (760)
Q Consensus 516 g~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~--~--~~a~~~Lg 590 (760)
|.++...|++++|+..|+++++.+|++ .+++.+|.++... |++++|+..+++++. + ..++.++|
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK-----------GEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 999999999999999999999999999 9999999999998 999999999999843 3 78899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHH-----------HHHh
Q 004336 591 SVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE-----------KRSE 657 (760)
Q Consensus 591 ~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~-----------~~~~ 657 (760)
.++...|++++|+..|+++++..|. .++..+|.++...|++++|+..|+++++..|.....+. ....
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999997766 88999999999999999999999999999885322111 1112
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 004336 658 YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL 714 (760)
Q Consensus 658 ~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~ 714 (760)
.+++++|+..++++++++|++..++..+|.++.+.|++++|+..|++++++.+....
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 488999999999999999999999999999999999999999999999998876554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=246.82 Aligned_cols=333 Identities=13% Similarity=0.061 Sum_probs=287.5
Q ss_pred CCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCH
Q 004336 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNW 439 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~ 439 (760)
+....+..+++..... .++.+.+++.+|...+..|++++|+..|++++..+|+++ .++..+|.++...|++
T Consensus 56 g~~~~A~~l~~~~l~~---~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 56 DETDVGLTLLSDRVLT---AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------EDVLLVASVLLKSKQY 126 (656)
T ss_pred CCcchhHHHhHHHHHh---CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCCH
Confidence 3444555555554444 455677899999999999999999999999999999996 8999999999999999
Q ss_pred HHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004336 440 TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 519 (760)
Q Consensus 440 ~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~ 519 (760)
++|+..+ .+++..+|++..++..+|.++...|++++|+..+++++...|++..++..++ .+
T Consensus 127 ~~Ai~~l------------------~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l 187 (656)
T PRK15174 127 ATVADLA------------------EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SF 187 (656)
T ss_pred HHHHHHH------------------HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HH
Confidence 9999999 9999999999999999999999999999999999999999999999887765 48
Q ss_pred HHCCCHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHH
Q 004336 520 YDTSHCEEGLRKAEESIQMKRSF--EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVY 593 (760)
Q Consensus 520 ~~~g~~eeAl~~~~~al~l~p~~--~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y 593 (760)
...|++++|+..+++++..+|.. .....++.++... +++++|+..+.+.+.. ..+++++|.++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-----------g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l 256 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-----------GKYQEAIQTGESALARGLDGAALRRSLGLAY 256 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 89999999999999999987644 4455667777777 8899999999888433 88999999999
Q ss_pred HHcCCHHH----HHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH----HhcCCHHH
Q 004336 594 VDCGQLDL----AADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR----SEYCDREL 663 (760)
Q Consensus 594 ~~~g~~~e----A~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~----~~~~~~~~ 663 (760)
...|++++ |+..|+++++.+|. .++..+|.++...|++++|+..++++++..|++..++..+ ...|++++
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999996 89999999998777 8999999999999999999999999999999887665444 34599999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 664 TRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 664 A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
|+..|++++..+|.....+..+|.++...|++++|+..|+++++..|++.. .++++|+..|.++++.-
T Consensus 337 A~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~-----------~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 337 ASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP-----------QSFEEGLLALDGQISAV 404 (656)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch-----------hhHHHHHHHHHHHHHhc
Confidence 999999999999999887888899999999999999999999999998752 34445555555555543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-23 Score=257.82 Aligned_cols=317 Identities=16% Similarity=0.031 Sum_probs=270.7
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
...|.+++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++ ++
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~------~a~~~Lg~~~~~~g~~~eA~~~y------------------~~ 410 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDS------YAVLGLGDVAMARKDYAAAERYY------------------QQ 410 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHH------------------HH
Confidence 3557788888999999999999999999885 88888999999999999999999 67
Q ss_pred HHHhCCCcHHHHHH------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 467 MLESDAPKGVLYFR------------------------------------------QSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 467 al~~~p~~~~~~~~------------------------------------------la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
++..+|++..++.. +|..+...|++++|++.|+++++.
T Consensus 411 aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 411 ALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL 490 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777666655444 445566789999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-
Q 004336 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK- 582 (760)
Q Consensus 505 ~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~- 582 (760)
+|+++.+++.+|.+|...|++++|+..++++++.+|++ ++++.++..+... +..++|+..+......
T Consensus 491 ~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~-----------~~~~~Al~~l~~l~~~~ 559 (1157)
T PRK11447 491 DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGS-----------DRDRAALAHLNTLPRAQ 559 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHhCCchh
Confidence 99999999999999999999999999999999999999 8888888887777 7777887777654211
Q ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH
Q 004336 583 -------------GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 649 (760)
Q Consensus 583 -------------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~ 649 (760)
......++..+...|++++|+.+++. .+.....+..+|.++...|++++|+..|+++++..|++.
T Consensus 560 ~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~ 637 (1157)
T PRK11447 560 WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA 637 (1157)
T ss_pred cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 23345678899999999999999872 344447889999999999999999999999999999887
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH------HH-HH
Q 004336 650 SAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL------LH-LR 718 (760)
Q Consensus 650 ~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~------~~-l~ 718 (760)
.+...++ ..|++++|+..++++++..|+++..+..+|.++...|++++|++.|++++...|+.+. ++ ..
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~ 717 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDA 717 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHH
Confidence 7766553 4599999999999999999999999999999999999999999999999998765431 22 33
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 004336 719 AAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 719 a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
+.++...|++++|+..|++++.
T Consensus 718 a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 718 ARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8889999999999999999985
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-22 Score=239.38 Aligned_cols=349 Identities=12% Similarity=0.002 Sum_probs=285.1
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
..+.++..+|..+...|++++|+..|+++++.+|+++ .++..++.++...|++++|+..+
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~la~~l~~~g~~~eA~~~l-------------- 106 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND------DYQRGLILTLADAGQYDEALVKA-------------- 106 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHH--------------
Confidence 3456688888889999999999999999999999996 88889999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
++++..+|+++. ++.+|.++...|++++|+..++++++..|++..++..+|.++...|..++|+..++++.. .|
T Consensus 107 ----~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p 180 (765)
T PRK10049 107 ----KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TP 180 (765)
T ss_pred ----HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CH
Confidence 999999999999 999999999999999999999999999999999999999999999999988888875554 32
Q ss_pred Ch-----------HHH------------H---HHHH-----HHHcccCCCCcc-------------hhhhhHHHHHHhhh
Q 004336 541 SF-----------EAF------------F---LKAY-----ALADSSQDSSCS-------------STVVSLLEDALKCP 576 (760)
Q Consensus 541 ~~-----------~a~------------~---~la~-----~l~~~~~~~~~~-------------~~~~~~leeAl~~~ 576 (760)
+. .+. + ..+. .......++... -...+++++|+..|
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 21 000 0 0000 000000111110 01225678888888
Q ss_pred Hhhcc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004336 577 SDRLR-----KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 645 (760)
Q Consensus 577 ~~~l~-----~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~------~a~~~La~~~~~~g~~~~A~~~l~~al~~~ 645 (760)
++.+. +..+...+|.+|...|++++|+..|+++++.+|. .....++.++...|++++|+..++++....
T Consensus 261 ~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 261 QRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 88843 2345555799999999999999999999886543 456778888999999999999999999987
Q ss_pred cCc-------------H--HH----HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 646 RNN-------------A--SA----YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 706 (760)
Q Consensus 646 ~~~-------------~--~~----~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal 706 (760)
|.. . .+ ...+...|+.++|+..+++++...|.++.++..+|.++...|++++|++.+++++
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 621 1 11 1223455999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 707 AFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 707 ~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
...|++..+++. +..+...|++++|...++++++..|+++.+..+-...
T Consensus 421 ~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 421 VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999987744 8889999999999999999999999999887664433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-21 Score=232.99 Aligned_cols=332 Identities=11% Similarity=0.002 Sum_probs=274.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC
Q 004336 392 VRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 471 (760)
Q Consensus 392 ~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~ 471 (760)
+....|++++|+..+.++...+|... .++..+|.++...|++++|...+ ++++..+
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~~~~a------~~~~~lA~~~~~~g~~~~A~~~~------------------~~al~~~ 79 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHMQLPA------RGYAAVAVAYRNLKQWQNSLTLW------------------QKALSLE 79 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhC
Confidence 44566799999999999998888884 78999999999999999999999 9999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAY 550 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~ 550 (760)
|.++.++..+|.++...|++++|+..++++++..|+++. +..+|.++...|++++|+..++++++..|++ .++..++.
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999 88888888
Q ss_pred HHHcccCCCCcc---h-----------------------------hhhhHH---HHHHhhhHhhccH-----------HH
Q 004336 551 ALADSSQDSSCS---S-----------------------------TVVSLL---EDALKCPSDRLRK-----------GQ 584 (760)
Q Consensus 551 ~l~~~~~~~~~~---~-----------------------------~~~~~l---eeAl~~~~~~l~~-----------~~ 584 (760)
++.......... . ...+.+ ++|++.++..+.. ..
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 776432211000 0 000112 5566655555311 12
Q ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHhhc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc--------HHHH
Q 004336 585 ALNN-LGSVYVDCGQLDLAADCYSNALKIR---HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN--------ASAY 652 (760)
Q Consensus 585 a~~~-Lg~~y~~~g~~~eA~~~~~~Al~~~---~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~--------~~~~ 652 (760)
+... +| .+...|++++|+..|+++++.. |..+...+|.+|...|++++|+..|+++++..|.. ..++
T Consensus 239 a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 239 ARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 2222 34 4467899999999999999864 44666668999999999999999999999887744 1223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 004336 653 EKRSEYCDRELTRADLEMVTQLDPLR---------------VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL 717 (760)
Q Consensus 653 ~~~~~~~~~~~A~~~l~kal~l~p~~---------------~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l 717 (760)
......+++++|+..++++...+|.. ..++..+|.++...|++++|++.+++++...|++..+++
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 33456699999999999999988732 346678999999999999999999999999999998885
Q ss_pred H-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 718 R-AAFHEHTGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 718 ~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
. +.++...|++++|++.++++++++|++..+.
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~ 430 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLEPRNINLE 430 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 5 9999999999999999999999999997644
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-21 Score=204.02 Aligned_cols=339 Identities=16% Similarity=0.153 Sum_probs=225.8
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....|.++-..|+-++..|+|++|+++|.+++.+.|+.+ --+.+++.+|...|+|++.++..
T Consensus 111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep------iFYsNraAcY~~lgd~~~Vied~------------ 172 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP------IFYSNRAACYESLGDWEKVIEDC------------ 172 (606)
T ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc------hhhhhHHHHHHHHhhHHHHHHHH------------
Confidence 456788888999999999999999999999999999987 55666899999999999999988
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH------------------HHHHh--------------CC
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ------------------LARQH--------------AA 506 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~------------------kal~~--------------~p 506 (760)
.++++++|+...++++.+.++..+|++++|+.... +.++. .|
T Consensus 173 ------TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p 246 (606)
T KOG0547|consen 173 ------TKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPP 246 (606)
T ss_pred ------HHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999999999875432 21110 00
Q ss_pred ---C-----------------------------------------------------------------c---------H
Q 004336 507 ---S-----------------------------------------------------------------D---------H 509 (760)
Q Consensus 507 ---~-----------------------------------------------------------------~---------~ 509 (760)
. + +
T Consensus 247 ~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A 326 (606)
T KOG0547|consen 247 VLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMA 326 (606)
T ss_pred CCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHH
Confidence 0 0 1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh--ccH--HH
Q 004336 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--LRK--GQ 584 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--l~~--~~ 584 (760)
.++...|..++-.|++..|...++++|.++|.+ ..|..++.+|.+. .+-++..+.|..+ +.+ ++
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~-----------~~~~~~~~~F~~A~~ldp~n~d 395 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADE-----------NQSEKMWKDFNKAEDLDPENPD 395 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhh-----------hccHHHHHHHHHHHhcCCCCCc
Confidence 223333444555566666666666666666666 4466666666655 3333333344333 222 66
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hc
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EY 658 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~ 658 (760)
+|+..|.+++-.++|++|+.-|++++.++|. .++..++-+.++++++++++..|+.+++..|+.+..|...+ ..
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq 475 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ 475 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH
Confidence 6666666666666666666666666666665 56666666666666666666666666666666555554332 34
Q ss_pred CCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHH
Q 004336 659 CDRELTRADLEMVTQLDPL------RVYPYRYRAAVL-MDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLG 730 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~------~~~~~~~La~~~-~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~ 730 (760)
+++++|++.|++++++.|. ++.++..-|.+. ...+++.+|+..+++|++++|.....+.. +.+..++|+.++
T Consensus 476 qqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 476 QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred HhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHH
Confidence 5666666666666666666 444444444322 23456666666666666666666655533 666666666666
Q ss_pred HHHHHHHHHhcCCCcHHHHHHH
Q 004336 731 ALRDCRAALSVDPNDQEMLELH 752 (760)
Q Consensus 731 A~~~~~~aL~l~P~~~~~l~~~ 752 (760)
|+++|++++.+...-.+++..|
T Consensus 556 AielFEksa~lArt~~E~~~a~ 577 (606)
T KOG0547|consen 556 AIELFEKSAQLARTESEMVHAY 577 (606)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 6666666666655555555444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-21 Score=211.55 Aligned_cols=305 Identities=15% Similarity=0.041 Sum_probs=253.0
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+...+..|..+...|++++|+..|+++++.+|++. .++..+|.++...|++++|+..+
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~------------- 92 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV------ELHLALGNLFRRRGEVDRAIRIH------------- 92 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHcCcHHHHHHHH-------------
Confidence 34455667778888889999999999999999999985 88999999999999999999999
Q ss_pred cHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 460 SLSVIYQMLESDAPK----GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 460 sl~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
++++...+.. ...+..+|.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++
T Consensus 93 -----~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 93 -----QNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred -----HHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 7776643222 3578899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 536 IQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 536 l~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
++..|.. .. . ....+..+|.++...|++++|+..|+++++..|
T Consensus 168 ~~~~~~~~~~---------~---------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 211 (389)
T PRK11788 168 EKLGGDSLRV---------E---------------------------IAHFYCELAQQALARGDLDAARALLKKALAADP 211 (389)
T ss_pred HHhcCCcchH---------H---------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence 9887765 10 0 034567789999999999999999999998766
Q ss_pred h--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH-HHH----HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 004336 615 T--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA-SAY----EKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAA 687 (760)
Q Consensus 615 ~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~-~~~----~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~ 687 (760)
. .+++.+|.++...|++++|++.++++++..|... ..+ ......|+.++|...++++++.+|+... +..+|.
T Consensus 212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~ 290 (389)
T PRK11788 212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQ 290 (389)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHH
Confidence 5 7888999999999999999999999999887542 222 2233568999999999999999997754 488999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHH-HH-cCCHHHHHHHHHHHH----hcCCCc
Q 004336 688 VLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFH-EH-TGDVLGALRDCRAAL----SVDPND 745 (760)
Q Consensus 688 ~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~-~~-~g~~~~A~~~~~~aL----~l~P~~ 745 (760)
++.+.|++++|+..++++++..|++..+... +... .. .|+..+|+..+++.+ ..+|++
T Consensus 291 ~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 291 LLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 9999999999999999999999999876633 2222 22 468888888777665 455553
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=242.27 Aligned_cols=142 Identities=16% Similarity=0.244 Sum_probs=132.7
Q ss_pred CccceeEEEEe--cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhH
Q 004336 178 DQVLRNVVFRI--HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (760)
Q Consensus 178 ~~~~~dv~~~~--~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v 255 (760)
++.+|||+|++ +|++|+|||.|||++|+||++||+++|+ +.+|+|+ + ++++|+.||+|+|||+|. |+.+||
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~-i~~~~~ 78 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKIN-ITSNNV 78 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceE-EcHHHH
Confidence 78899999998 9999999999999999999999999998 6789997 7 999999999999999997 999999
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchhhh
Q 004336 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEI 327 (760)
Q Consensus 256 ~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~~l 327 (760)
++||.+|++||++.|+..|++||...+ +.+||++++++|..+++..|...|.+++.++|......+++..+
T Consensus 79 ~~ll~~A~~l~~~~l~~~C~~~l~~~l-~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l 149 (534)
T PHA03098 79 KDILSIANYLIIDFLINLCINYIIKII-DDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYL 149 (534)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhC-CHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcC
Confidence 999999999999999999999999998 79999999999999999999999999999999876666555533
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=225.96 Aligned_cols=346 Identities=13% Similarity=0.008 Sum_probs=281.6
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC---HHHHHHHHhhhccccc----
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN---WTIADCWLQLYDRWSS---- 454 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~---~~~A~~~l~l~~~~~~---- 454 (760)
...++.+++...+..|++++|..+|+++....++-. ........++.++...+. ...+..+. ..-.+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~ 448 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR---LSQTLMARLASLLESHPYLATPAKVAILS---KPLPLAEQR 448 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc---cCHHHHHHHHHHHHhCCcccchHHHHHhc---cccccchhH
Confidence 456778889999999999999999999988733321 111344478888888877 34443332 10000
Q ss_pred ------cCCcCcHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Q 004336 455 ------VDDIGSLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 455 ------~~d~~sl~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~e 526 (760)
.+.......+.+++..+|. ++.+++++|.++.. +++++|+..|.+++...|++. ....+|.++...|+++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYA 526 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHH
Confidence 0111234446777777788 99999999999998 899999999999999999765 4667788888999999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHH
Q 004336 527 EGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLA 602 (760)
Q Consensus 527 eAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA 602 (760)
+|+..|++++...|....++.+|.++... |.+++|...+.+.+.. ...+..++......|++++|
T Consensus 527 eAi~~~rka~~~~p~~~a~~~la~all~~-----------Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 527 TALAAWQKISLHDMSNEDLLAAANTAQAA-----------GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHH
Confidence 99999999988767667788888888888 8888999888887443 44444555566667999999
Q ss_pred HHHHHHHHhhcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCC
Q 004336 603 ADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPL 677 (760)
Q Consensus 603 ~~~~~~Al~~~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~ 677 (760)
+..|+++++.+|. .++.++|.++.+.|++++|+..|+++++..|++..++..++ ..|++++|+..++++++.+|+
T Consensus 596 l~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 596 LNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999998776 88999999999999999999999999999998887776654 458999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 004336 678 RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 678 ~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
++.+++++|.++...|++++|+..|+++++..|++..+... +.+.....+++.|.+.++++..++|+..
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999999999999999999999877744 7888887889999999999999988765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=214.26 Aligned_cols=213 Identities=17% Similarity=0.175 Sum_probs=153.0
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
+..+..+|+.++.|..+|++|--+++++.|+++|++|++++|....+|..+|.-+..+..+|.|...|+.|+..+|.+
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-- 488 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-- 488 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh--
Confidence 444455556666666666666666666666666666666666655566566655555666666666666666555555
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHH
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLA 622 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La 622 (760)
-.+|+.+|.+|.++++++.|.-.|++|++++|. .....+|
T Consensus 489 --------------------------------------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g 530 (638)
T KOG1126|consen 489 --------------------------------------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIG 530 (638)
T ss_pred --------------------------------------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhh
Confidence 455666666666666666666666666666655 4455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 623 RVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAEL 702 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l 702 (760)
..+.+.|+. ++|+..+++|+.++|.++-..+..|.+++..+++++|+..+
T Consensus 531 ~~~~~~k~~------------------------------d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 531 RIQHQLKRK------------------------------DKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred HHHHHhhhh------------------------------hHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence 555555555 66677777788888899999999999999999999999999
Q ss_pred HHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 004336 703 SRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747 (760)
Q Consensus 703 ~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~ 747 (760)
++.-++.|+....+ +.+.+|.++|+.+.|+..|--|+.++|.-.+
T Consensus 581 EeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 581 EELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999998777 6699999999999999999999999998665
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-19 Score=201.75 Aligned_cols=356 Identities=17% Similarity=0.079 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHH
Q 004336 365 TVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 444 (760)
Q Consensus 365 ~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~ 444 (760)
...+.+..........-.+..+|++|..|..+|+|++|..+|.++++.+|++- +-.++.+|..+...|+++.|..
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~-----~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF-----VLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc-----cccccchhHHHHHhchHHHHHH
Confidence 33444444444444566788899999999999999999999999999999984 4678889999999999999999
Q ss_pred HHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004336 445 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN----CPEAAMRSLQLARQHAASDHERLVYEGWILY 520 (760)
Q Consensus 445 ~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~ 520 (760)
.+ ++.+...|++.+....+|.+|...+ ..+.|..++.++++..|.+.++|..+|.++.
T Consensus 364 ~f------------------Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 364 CF------------------EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred HH------------------HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 99 9999999999999999999999886 6788999999999999999999999999987
Q ss_pred HCCCHHHHHHHHHHHHhh-----cCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH------------
Q 004336 521 DTSHCEEGLRKAEESIQM-----KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK------------ 582 (760)
Q Consensus 521 ~~g~~eeAl~~~~~al~l-----~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~------------ 582 (760)
...-+.. +..|.+|+.+ .+-. +...++|..+... |.+++|...+..+...
T Consensus 426 ~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~-----------g~~~~A~~~f~~A~~~~~~~~n~de~~~ 493 (1018)
T KOG2002|consen 426 QTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRL-----------GNIEKALEHFKSALGKLLEVANKDEGKS 493 (1018)
T ss_pred hcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh-----------cChHHHHHHHHHHhhhhhhhcCcccccc
Confidence 7655555 9999998853 2211 7778888887777 6666666666665221
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH--
Q 004336 583 --GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS-- 656 (760)
Q Consensus 583 --~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~-- 656 (760)
....+++|.++...++++.|.+.|...++..|. +++..+|-.....++..+|..++..++..+..+..+....+
T Consensus 494 ~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 494 TNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 224778888888888888888888888887766 67777776666777788888888877766542221111000
Q ss_pred --------------------------------------------------hcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 004336 657 --------------------------------------------------EYCDRELTRADLEMVTQLDPLRVYPYRYRA 686 (760)
Q Consensus 657 --------------------------------------------------~~~~~~~A~~~l~kal~l~p~~~~~~~~La 686 (760)
..+..++|++.|.++++.+|.+.++-+.+|
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIg 653 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIG 653 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchh
Confidence 112457788999999999999988888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHh
Q 004336 687 AVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVD--PNDQEMLELHSRV 755 (760)
Q Consensus 687 ~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~--P~~~~~l~~~~r~ 755 (760)
.++...|++.+|+..|.++.+.-.+....|+. |.+|..+|+|..|++.|+.+++.. .++.+++..+.|+
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 88888888888888888887766656666655 777777788888888888777632 3566666666654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-20 Score=202.33 Aligned_cols=273 Identities=16% Similarity=0.016 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
...+..|..+...|++++|+..+ .+++..+|++..+++.+|.++...|++++|+..+++++.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~------------------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 97 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLF------------------IEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS 97 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHH------------------HHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 45666788889999999999999 999999999999999999999999999999999999988
Q ss_pred hCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh
Q 004336 504 HAASD----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 579 (760)
Q Consensus 504 ~~p~~----~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~ 579 (760)
..+.. ..++..+|.+|...|++++|+..|+++++.+|..
T Consensus 98 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~------------------------------------- 140 (389)
T PRK11788 98 RPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA------------------------------------- 140 (389)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch-------------------------------------
Confidence 54332 3568899999999999999999999999887777
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHH
Q 004336 580 LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY 652 (760)
Q Consensus 580 l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~ 652 (760)
..++..++.++...|++++|++.|+++++..+. ..+..+|.++...|++++|+..++++++..|.....+
T Consensus 141 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 217 (389)
T PRK11788 141 ---EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRAS 217 (389)
T ss_pred ---HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHH
Confidence 678888999999999999999999999886543 2566889999999999999999999999999776555
Q ss_pred HHHH----hcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCC
Q 004336 653 EKRS----EYCDRELTRADLEMVTQLDPLR-VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGD 727 (760)
Q Consensus 653 ~~~~----~~~~~~~A~~~l~kal~l~p~~-~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~ 727 (760)
..++ ..|++++|+..++++...+|.+ ...+..++.+|...|++++|+..+++++...|+...+...+.++...|+
T Consensus 218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCC
Confidence 4443 4589999999999999999876 4567889999999999999999999999999988766566888888899
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 728 VLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 728 ~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
+++|+..++++++..|++.....++..
T Consensus 298 ~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 298 PEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 999999999999999999877655554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-19 Score=217.12 Aligned_cols=325 Identities=14% Similarity=0.005 Sum_probs=267.0
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
..+.+.+|....+...+..|.+. .++..++....+.|+.++|..++ +++....++.
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~------~~l~q~~~~~~~~~~~~~a~~~~------------------~~~~~~~~~~ 409 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANL------TRLDQLTWQLMQNGQSREAADLL------------------LQRYPFQGDA 409 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcccHHHHHHHH------------------HHhcCCCccc
Confidence 45689999999999888889986 99999999999999999999999 4444331111
Q ss_pred ---HHHHHHHHHHHHHc-------------------------CCH---HHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH
Q 004336 475 ---GVLYFRQSLLLLRL-------------------------NCP---EAAMRSLQLARQHAAS--DHERLVYEGWILYD 521 (760)
Q Consensus 475 ---~~~~~~la~~~~~~-------------------------g~~---~~Ai~~l~kal~~~p~--~~~a~~~Lg~i~~~ 521 (760)
..+..+++.+|.+. |+. ..+...+.+++...|. ++.+++++|.++..
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 11222444444333 333 3345556666677788 99999999999998
Q ss_pred CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCC
Q 004336 522 TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQ 598 (760)
Q Consensus 522 ~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~ 598 (760)
|+.++|+..+.+++...|+......++..+... +++++|+..+++.... ...+..+|.++...|+
T Consensus 490 -~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~-----------Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd 557 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQV-----------EDYATALAAWQKISLHDMSNEDLLAAANTAQAAGN 557 (987)
T ss_pred -CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHC-----------CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCC
Confidence 899999999999999999875566667777777 9999999999877332 4567889999999999
Q ss_pred HHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHH
Q 004336 599 LDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVT 672 (760)
Q Consensus 599 ~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal 672 (760)
+++|+.+|+++++.+|. ..+..++......|++++|+..++++++..|+ ...+..++ ..|+.++|+..+++++
T Consensus 558 ~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 558 GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999998766 45555666666779999999999999999996 66665543 5699999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004336 673 QLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 751 (760)
Q Consensus 673 ~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~ 751 (760)
+++|+++.++.++|.++...|++++|+..|+++++..|+++.++.. +.++...|++++|+..|+++++++|++..+...
T Consensus 637 ~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~ 716 (987)
T PRK09782 637 ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPL 716 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhh
Confidence 9999999999999999999999999999999999999999988844 999999999999999999999999999888766
Q ss_pred HHHhh
Q 004336 752 HSRVY 756 (760)
Q Consensus 752 ~~r~~ 756 (760)
+..+.
T Consensus 717 ~g~~~ 721 (987)
T PRK09782 717 TPEQN 721 (987)
T ss_pred hhHHH
Confidence 55443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-19 Score=192.89 Aligned_cols=330 Identities=16% Similarity=0.144 Sum_probs=246.6
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
....|+..+..|+|+.|+.+|..++.++|.+. -.+.+...++...|+|++|+.-- .
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh------vlySnrsaa~a~~~~~~~al~da------------------~ 60 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH------VLYSNRSAAYASLGSYEKALKDA------------------T 60 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCcc------chhcchHHHHHHHhhHHHHHHHH------------------H
Confidence 44567788888899999999999999999986 44555777888899999998877 8
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH----------------------------
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW---------------------------- 517 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~---------------------------- 517 (760)
+.++++|+.+..|.++|..+.-+|+|++|+..|.+.|+.+|++...+..|+.
T Consensus 61 k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~ 140 (539)
T KOG0548|consen 61 KTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTN 140 (539)
T ss_pred HHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhh
Confidence 9999999999999999999999999999999999999888876555444443
Q ss_pred --------------------------------------------------------------------------------
Q 004336 518 -------------------------------------------------------------------------------- 517 (760)
Q Consensus 518 -------------------------------------------------------------------------------- 517 (760)
T Consensus 141 ~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~ 220 (539)
T KOG0548|consen 141 YSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRV 220 (539)
T ss_pred hhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHH
Confidence
Q ss_pred ------------HHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--
Q 004336 518 ------------ILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-- 582 (760)
Q Consensus 518 ------------i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-- 582 (760)
..+...+++.|++.|..++.++ .. ..+.+.+.++... +.+.+.+....++.+.
T Consensus 221 k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~-----------~~~~~c~~~c~~a~E~gr 288 (539)
T KOG0548|consen 221 KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLER-----------GKYAECIELCEKAVEVGR 288 (539)
T ss_pred HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhc-----------cHHHHhhcchHHHHHHhH
Confidence 3444445555555555555555 33 4444445555444 3333333322222111
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHH--
Q 004336 583 ---------GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASA-- 651 (760)
Q Consensus 583 ---------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~-- 651 (760)
+.+...+|..|...++++.|+.+|++++....+ ..+.......+++........-..|..+..
T Consensus 289 e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r 362 (539)
T KOG0548|consen 289 ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT------PDLLSKLKEAEKALKEAERKAYINPEKAEEER 362 (539)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHH
Confidence 334444666777777777777777777664332 233334444555555555555555533221
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCH
Q 004336 652 --YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDV 728 (760)
Q Consensus 652 --~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~ 728 (760)
.+.....|++..|+.+|.+++..+|+++..|.++|.+|.+.|.+..|+...+++++++|+....+++ +.++..+.+|
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 2333456899999999999999999999999999999999999999999999999999999999988 9999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 729 LGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 729 ~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
++|++.|+++++++|++.++.+.|.|..+
T Consensus 443 dkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 99999999999999999999999988765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-18 Score=196.28 Aligned_cols=344 Identities=13% Similarity=0.092 Sum_probs=284.7
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+.++..++.-++..|+|..+..+...++...-..+ ...+.++.+|..+..+|++++|..+|
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~---~~aes~Y~~gRs~Ha~Gd~ekA~~yY------------ 330 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS---IKAESFYQLGRSYHAQGDFEKAFKYY------------ 330 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHhhccHHHHHHHH------------
Confidence 344566777888888999999999999999988763332 22467899999999999999999999
Q ss_pred CcHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC----CHHHHHHHHH
Q 004336 459 GSLSVIYQMLESDAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS----HCEEGLRKAE 533 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g----~~eeAl~~~~ 533 (760)
.++++.+|++ ...++.+|..|...|+++.|+.+|++.++..|++.+....||.+|...+ ..+.|..+..
T Consensus 331 ------~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 331 ------MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred ------HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 9999999988 7788999999999999999999999999999999999999999998886 6789999999
Q ss_pred HHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 534 ESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR--KGQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 534 ~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~--~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
++++..|.+ ++|..++.++... .....++.+..|+..+..... ++..++++|..++..|++.+|...|..|+
T Consensus 405 K~~~~~~~d~~a~l~laql~e~~-----d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 405 KVLEQTPVDSEAWLELAQLLEQT-----DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHhcccccHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 999999998 9999999999886 222225566666666555533 28999999999999999999999999998
Q ss_pred hh-----cchH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhh
Q 004336 611 KI-----RHTR-------AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQL 674 (760)
Q Consensus 611 ~~-----~~~~-------a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l 674 (760)
.. ++.. ..|++|+++...+++..|...|..+++.+|.....|..+. ..+...+|...+..++..
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 85 2222 5899999999999999999999999999998888777663 236789999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHH------------cCCHHHHHHHHHHHH
Q 004336 675 DPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL---HLLHLRAAFHEH------------TGDVLGALRDCRAAL 739 (760)
Q Consensus 675 ~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~---~~~~l~a~~~~~------------~g~~~~A~~~~~~aL 739 (760)
+..++.++..+|..+....++..|.+-|+..+...... -.+.-.|.+|.+ .+.+++|++.|.++|
T Consensus 560 d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 560 DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887777543322 222211334432 256899999999999
Q ss_pred hcCCCcHHH
Q 004336 740 SVDPNDQEM 748 (760)
Q Consensus 740 ~l~P~~~~~ 748 (760)
..+|.|.-+
T Consensus 640 ~~dpkN~yA 648 (1018)
T KOG2002|consen 640 RNDPKNMYA 648 (1018)
T ss_pred hcCcchhhh
Confidence 999988654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-19 Score=179.22 Aligned_cols=313 Identities=16% Similarity=0.111 Sum_probs=255.8
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+.-++.+|..++.+|++.+|+..|-.++..+|++ ..+++..|.+|..+|+-..|+.-+
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~------Y~aifrRaT~yLAmGksk~al~Dl------------- 95 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN------YQAIFRRATVYLAMGKSKAALQDL------------- 95 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh------HHHHHHHHHHHhhhcCCccchhhH-------------
Confidence 3455668889999999999999999999999999999 489999999999999999998888
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHH------------HHHHHHCCC
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYE------------GWILYDTSH 524 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~---~a~~~L------------g~i~~~~g~ 524 (760)
.+.+++.|+...+....|.+++++|++++|+..|++.++.+|++. ++...+ ...++..|+
T Consensus 96 -----~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 96 -----SRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD 170 (504)
T ss_pred -----HHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999643 333222 233456788
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHH
Q 004336 525 CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAAD 604 (760)
Q Consensus 525 ~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~ 604 (760)
+..|+....+.+++.|=+ +..+...+.+|...|++..|+.
T Consensus 171 ~~~ai~~i~~llEi~~Wd----------------------------------------a~l~~~Rakc~i~~~e~k~AI~ 210 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQPWD----------------------------------------ASLRQARAKCYIAEGEPKKAIH 210 (504)
T ss_pred hhhHHHHHHHHHhcCcch----------------------------------------hHHHHHHHHHHHhcCcHHHHHH
Confidence 899999999988888776 6677777888888888888888
Q ss_pred HHHHHHhhc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHH---HH-------------HHhcCCHHHHHH
Q 004336 605 CYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY---EK-------------RSEYCDRELTRA 666 (760)
Q Consensus 605 ~~~~Al~~~--~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~---~~-------------~~~~~~~~~A~~ 666 (760)
-++.+-++. .++.++.++.+++..|+.+.++...+..++.+|+....| .. ....+++.++++
T Consensus 211 Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle 290 (504)
T KOG0624|consen 211 DLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLE 290 (504)
T ss_pred HHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 888887754 448888888888888888888888888888888543322 11 123467778888
Q ss_pred HHHHHHhhCCCChHH----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhc
Q 004336 667 DLEMVTQLDPLRVYP----YRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 667 ~l~kal~l~p~~~~~----~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
..++.++.+|..+.+ ...+..++...|++.+|+....+++.+.|++.... -++..|.....|+.|+..|++|++.
T Consensus 291 ~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 291 AGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 888888888885543 33456678888899999999999999999887666 5588888878899999999999999
Q ss_pred CCCcHHHHHHHHHhh
Q 004336 742 DPNDQEMLELHSRVY 756 (760)
Q Consensus 742 ~P~~~~~l~~~~r~~ 756 (760)
+|+|..+.+-+.+++
T Consensus 371 n~sn~~~reGle~Ak 385 (504)
T KOG0624|consen 371 NESNTRAREGLERAK 385 (504)
T ss_pred CcccHHHHHHHHHHH
Confidence 999988876665544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-19 Score=194.88 Aligned_cols=269 Identities=16% Similarity=0.130 Sum_probs=231.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC
Q 004336 394 LLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 473 (760)
Q Consensus 394 l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~ 473 (760)
..+-+..+|+..|++.-..-++.. ..+..+|..|..+++|++|..+| +.+-...|.
T Consensus 330 ~s~y~~~~A~~~~~klp~h~~nt~------wvl~q~GrayFEl~~Y~~a~~~F------------------~~~r~~~p~ 385 (638)
T KOG1126|consen 330 LSQYNCREALNLFEKLPSHHYNTG------WVLSQLGRAYFELIEYDQAERIF------------------SLVRRIEPY 385 (638)
T ss_pred HHHHHHHHHHHHHHhhHHhcCCch------HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhhccc
Confidence 334467899999999555556654 77888999999999999999999 777777776
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 553 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~ 553 (760)
.....-....++..+.+--+---.-+..++.+|..++.|-.+|++|--+++++.|++.|++|++++|.+
T Consensus 386 rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f----------- 454 (638)
T KOG1126|consen 386 RVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF----------- 454 (638)
T ss_pred cccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc-----------
Confidence 665555556666666555444445566788899999999999999999999999999999999999999
Q ss_pred cccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCH
Q 004336 554 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNK 631 (760)
Q Consensus 554 ~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~ 631 (760)
+.+|..+|.-+.....+|.|..+|++|+..+|. .+|+++|.+|.+++++
T Consensus 455 -----------------------------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 455 -----------------------------AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred -----------------------------chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchh
Confidence 788888999999999999999999999998877 8999999999999988
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 632 TTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 632 ~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
+.|.-+|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.
T Consensus 506 ------------------------------e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 506 ------------------------------EFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred ------------------------------hHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 55566667777888888888899999999999999999999999999999
Q ss_pred cHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 712 LHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 712 ~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
++... .++.++..++++++|+..+++.-++-|++.-++-++.++-
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY 601 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 98655 5599999999999999999999999999998887766654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-17 Score=183.11 Aligned_cols=300 Identities=15% Similarity=0.028 Sum_probs=238.7
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
.+++......|.+.+..|+++.|.+.+.++.+..|+.. ..+...|.++.+.|+++.|..++
T Consensus 81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~------~~~llaA~aa~~~g~~~~A~~~l------------- 141 (409)
T TIGR00540 81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV------LNLIKAAEAAQQRGDEARANQHL------------- 141 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHCCCHHHHHHHH-------------
Confidence 44666777888889999999999999999999988874 67778899999999999999999
Q ss_pred cHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 460 SLSVIYQMLESDAPKG-VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 460 sl~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.++.+..|++. .+....+.++...|++++|...++++++..|+++.++..++.++...|++++|+..+++..+.
T Consensus 142 -----~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 142 -----EEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred -----HHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 88888888885 566667999999999999999999999999999999999999999999999999999999977
Q ss_pred cCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---
Q 004336 539 KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--- 614 (760)
Q Consensus 539 ~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~--- 614 (760)
.... ..+.. .......-+...+..+++.+.+.++.+..|
T Consensus 217 ~~~~~~~~~~-------------------------------------l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~ 259 (409)
T TIGR00540 217 GLFDDEEFAD-------------------------------------LEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHR 259 (409)
T ss_pred CCCCHHHHHH-------------------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHH
Confidence 4433 11100 000111111223333344445555555332
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHH----HHHHHH--hcCCHHHHHHHHHHHHhhCCCCh--HHHH
Q 004336 615 ---TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS----AYEKRS--EYCDRELTRADLEMVTQLDPLRV--YPYR 683 (760)
Q Consensus 615 ---~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~----~~~~~~--~~~~~~~A~~~l~kal~l~p~~~--~~~~ 683 (760)
+..+..++..+...|++++|.+.++++++..|++.. .+.... .-++.+++...++++++.+|+++ ....
T Consensus 260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 267777778888888888888888888887776653 222221 12567888999999999999999 8899
Q ss_pred HHHHHHHHcCCHHHHHHHHH--HHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 684 YRAAVLMDSHKENEAIAELS--RAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 684 ~La~~~~~~g~~~eAi~~l~--kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
.+|+++++.|++++|.++|+ ++++..|++......+.++.+.|+.++|.++|++++.
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999 6888899988766668899999999999999999875
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-17 Score=192.12 Aligned_cols=339 Identities=13% Similarity=0.013 Sum_probs=248.6
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
.+..++...|++++|+.++++++ +|.+.. ..++..+|.++...|++++|+.++ +++
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~--~p~n~~----~~~llalA~ly~~~gdyd~Aiely------------------~ka 128 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ--SSMNIS----SRGLASAARAYRNEKRWDQALALW------------------QSS 128 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc--cCCCCC----HHHHHHHHHHHHHcCCHHHHHHHH------------------HHH
Confidence 44455555678888888888887 444420 134444467888888888888888 888
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHH
Q 004336 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 546 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~ 546 (760)
++.+|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..+|+..++++++.+|++ +++.
T Consensus 129 L~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~ 207 (822)
T PRK14574 129 LKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLK 207 (822)
T ss_pred HhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88888888888888888888888888888888888888875554 555666666777777888888888888887 6666
Q ss_pred HHHHHHHcccCCC------------------------------------Ccc-h--------------------------
Q 004336 547 LKAYALADSSQDS------------------------------------SCS-S-------------------------- 563 (760)
Q Consensus 547 ~la~~l~~~~~~~------------------------------------~~~-~-------------------------- 563 (760)
.+..++...+..+ ..+ .
T Consensus 208 ~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~ 287 (822)
T PRK14574 208 NHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEA 287 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCcc
Confidence 5544444332210 000 0
Q ss_pred ---------------hhhhHHHHHHhhhHhhc---c--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc------h--
Q 004336 564 ---------------TVVSLLEDALKCPSDRL---R--KGQALNNLGSVYVDCGQLDLAADCYSNALKIRH------T-- 615 (760)
Q Consensus 564 ---------------~~~~~leeAl~~~~~~l---~--~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~------~-- 615 (760)
...++..++++.|+... . |..+....|..|+..+++++|+..|++++...+ .
T Consensus 288 ~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~ 367 (822)
T PRK14574 288 QADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDL 367 (822)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcch
Confidence 01122333333333331 1 144566678889999999999999998877431 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC------------c---HHHH----HHHHhcCCHHHHHHHHHHHHhhCC
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN------------N---ASAY----EKRSEYCDRELTRADLEMVTQLDP 676 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~------------~---~~~~----~~~~~~~~~~~A~~~l~kal~l~p 676 (760)
.....|-.+|...+++++|..++++..+..|. + .... ..+...|+..+|.+.+++.+...|
T Consensus 368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP 447 (822)
T PRK14574 368 LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP 447 (822)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33467888888999999999999998875551 1 1111 112344899999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004336 677 LRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 751 (760)
Q Consensus 677 ~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~ 751 (760)
.+...+..+|.++...|++.+|...++.+..+.|++..+... +..+..+|++.+|....+++++..|+++.+.++
T Consensus 448 ~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 448 ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQEL 523 (822)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHH
Confidence 999999999999999999999999999999999999887755 888888899999999999999999999987764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-16 Score=166.05 Aligned_cols=344 Identities=15% Similarity=0.036 Sum_probs=271.7
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..+|..|.++...|....|+..|..++...|-+- .||..|+.+..... ..
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W------~AWleL~~lit~~e-------~~---------------- 214 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFW------SAWLELSELITDIE-------IL---------------- 214 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcch------HHHHHHHHhhchHH-------HH----------------
Confidence 56788899999999999999999999999999884 77877776642211 11
Q ss_pred HHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 463 VIYQMLESDA--PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 463 ~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
......-| .+...-+-++.++.+..+.++++.-+++.... -|.....-...|.+.+.+.++++|+..|+...+.+
T Consensus 215 --~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD 292 (559)
T KOG1155|consen 215 --SILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND 292 (559)
T ss_pred --HHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 22221223 33444556788888888899999888888887 67888888888999999999999999999999888
Q ss_pred CCh----HHHHHHHHHHHcc-----------cCCC---------CcchhhhhHHHHHHhhhHhhc--cH--HHHHHHHHH
Q 004336 540 RSF----EAFFLKAYALADS-----------SQDS---------SCSSTVVSLLEDALKCPSDRL--RK--GQALNNLGS 591 (760)
Q Consensus 540 p~~----~a~~~la~~l~~~-----------~~~~---------~~~~~~~~~leeAl~~~~~~l--~~--~~a~~~Lg~ 591 (760)
|.. +.+.+.-.+.... ..+. .+.-...+..++|+.+|++++ .| ..+|..+|.
T Consensus 293 PYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGH 372 (559)
T KOG1155|consen 293 PYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGH 372 (559)
T ss_pred CCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhH
Confidence 854 3332221111110 0111 111234577899999999994 34 889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHh----cCCHHHHH
Q 004336 592 VYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDRELTR 665 (760)
Q Consensus 592 ~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~----~~~~~~A~ 665 (760)
-|..+++...|++.|++|++++|. ++|++||++|..++-+.=|+-+|+++++..|++..++..++. .++.++|+
T Consensus 373 EyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 373 EYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999999998 899999999999999999999999999999998888777753 48899999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 004336 666 ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK-------ADLHLLH-LRAAFHEHTGDVLGALRDCRA 737 (760)
Q Consensus 666 ~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~-------p~~~~~~-l~a~~~~~~g~~~~A~~~~~~ 737 (760)
+.|..++.....+..++..+|.+|.+.++..+|..+|++-++.. |+...+. ..+..+.+.+++++|-.+..+
T Consensus 453 KCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 453 KCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999998743 2222222 458888888999999999999
Q ss_pred HHhcCCCcHHHHHHHHHhhc
Q 004336 738 ALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 738 aL~l~P~~~~~l~~~~r~~~ 757 (760)
++.-++.-.++..++..+.+
T Consensus 533 ~~~~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 533 VLKGETECEEAKALLREIRK 552 (559)
T ss_pred HhcCCchHHHHHHHHHHHHH
Confidence 99998888777777666653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=178.32 Aligned_cols=281 Identities=14% Similarity=0.089 Sum_probs=230.3
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHH-HHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQL-HMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~-lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
..+|.-++..+ +|.+-.+.++..+..+|-+. ..+-. +| ++...|+..+-..+-
T Consensus 248 ~~~ad~~y~~c-------~f~~c~kit~~lle~dpfh~------~~~~~~ia-~l~el~~~n~Lf~ls------------ 301 (611)
T KOG1173|consen 248 AEKADRLYYGC-------RFKECLKITEELLEKDPFHL------PCLPLHIA-CLYELGKSNKLFLLS------------ 301 (611)
T ss_pred HHHHHHHHHcC-------hHHHHHHHhHHHHhhCCCCc------chHHHHHH-HHHHhcccchHHHHH------------
Confidence 34455555556 99999999999999999996 44443 44 666777666555444
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.+.+...|..+..|+..|..|...|++.+|.++|.++..++|....+|...|..+...|..++|+..|..|-++
T Consensus 302 ------h~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 302 ------HKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred ------HHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--H
Q 004336 539 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--R 616 (760)
Q Consensus 539 ~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~ 616 (760)
-|.. -.....+|.-|...++++-|..+|.+|+.+.|. -
T Consensus 376 ~~G~----------------------------------------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl 415 (611)
T KOG1173|consen 376 MPGC----------------------------------------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPL 415 (611)
T ss_pred ccCC----------------------------------------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcch
Confidence 8877 345566888999999999999999999998877 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 004336 617 AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696 (760)
Q Consensus 617 a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~ 696 (760)
++..+|.+.+..+.+.+|..+|+.++..-+ .+....+.-...+.+||.++.+.++++
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik-----------------------~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIK-----------------------SVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhh-----------------------hccccccchhHHHHhHHHHHHHHhhHH
Confidence 888999999999999999999998773322 111111222345678888888888888
Q ss_pred HHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 697 EAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 697 eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
+|+..+++++...|.+...+-. |.+|..+|+++.|++.|.++|.++|++.-+-+++++.
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 8888888888888888877744 7888888888888888888888888887666666544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-17 Score=182.95 Aligned_cols=322 Identities=15% Similarity=0.092 Sum_probs=251.1
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..+...++..+.+|++++|+.++.++++.+|.++ .+|+.||.+|.++|+.+++....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~------~ay~tL~~IyEqrGd~eK~l~~~----------------- 196 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP------IAYYTLGEIYEQRGDIEKALNFW----------------- 196 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch------hhHHHHHHHHHHcccHHHHHHHH-----------------
Confidence 3445556667777899999999999999999996 99999999999999999999887
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF- 542 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~- 542 (760)
-.+-.++|.+.+.|..++....++|++++|.-+|.+|++.+|.+....+..+.+|.++|++..|+..|.+++...|..
T Consensus 197 -llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d 275 (895)
T KOG2076|consen 197 -LLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD 275 (895)
T ss_pred -HHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh
Confidence 788889999999999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred -----HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 543 -----EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK------GQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 543 -----~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
..-...+..+... +.-+.|++.+...+.. ...++.++.++....+++.|......-..
T Consensus 276 ~er~~d~i~~~~~~~~~~-----------~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 276 IERIEDLIRRVAHYFITH-----------NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 1122223333333 3335566655555332 45667788999999999999887765543
Q ss_pred ----------------------h---c----ch-HH-HHHHHHHHHHcCCHHHHHHHHHHHHHhc--c-CcHHHHHH---
Q 004336 612 ----------------------I---R----HT-RA-HQGLARVHFLKNNKTTAYEEMTKLIKKA--R-NNASAYEK--- 654 (760)
Q Consensus 612 ----------------------~---~----~~-~a-~~~La~~~~~~g~~~~A~~~l~~al~~~--~-~~~~~~~~--- 654 (760)
. . +. .+ ...++.+..+.++..+++..+. .+.. + ....+|..
T Consensus 345 r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l--~~~n~~~~d~~dL~~d~a~ 422 (895)
T KOG2076|consen 345 RESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFL--VEDNVWVSDDVDLYLDLAD 422 (895)
T ss_pred cccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHH--HHhcCChhhhHHHHHHHHH
Confidence 0 0 00 23 4444555555555555544443 3333 3 22333332
Q ss_pred -HHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHH
Q 004336 655 -RSEYCDRELTRADLEMVTQLDPL-RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGA 731 (760)
Q Consensus 655 -~~~~~~~~~A~~~l~kal~l~p~-~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A 731 (760)
+...|++.+|+..+..++...+. +...|+.+|.+|+.+|.+++|+..|++++...|++.+.... +.++.+.|+.++|
T Consensus 423 al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 423 ALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKA 502 (895)
T ss_pred HHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHH
Confidence 23448899999999999887764 45789999999999999999999999999999999988855 8888899999999
Q ss_pred HHHHHHHHhcC
Q 004336 732 LRDCRAALSVD 742 (760)
Q Consensus 732 ~~~~~~aL~l~ 742 (760)
.+.++...--|
T Consensus 503 lEtL~~~~~~D 513 (895)
T KOG2076|consen 503 LETLEQIINPD 513 (895)
T ss_pred HHHHhcccCCC
Confidence 99999877333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-17 Score=166.36 Aligned_cols=298 Identities=13% Similarity=0.029 Sum_probs=242.1
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
-+.-+..++-.-.+..|++. ..+..+|.++...|++++|+..| +++...+|.....
T Consensus 213 s~a~~t~l~le~~~~lr~Nv------hLl~~lak~~~~~Gdn~~a~~~F------------------e~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNE------HLMMALGKCLYYNGDYFQAEDIF------------------SSTLCANPDNVEA 268 (564)
T ss_pred chhhhHHHHHHhhccCCccH------HHHHHHhhhhhhhcCchHHHHHH------------------HHHhhCChhhhhh
Confidence 33444445555556666663 66666777777777777777777 7777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccC
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 557 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~ 557 (760)
.-..|.++...|++++-...-...+........-|+--|..++..++++.|+.+-+++|+.+|.+
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~--------------- 333 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN--------------- 333 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc---------------
Confidence 77777777777777777777777776666666667777777777777777777777777777777
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHH
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~ 635 (760)
.+++...|..+...|+.++|+-.|+.|..+.|. +.+.+|..+|...|++.+|.
T Consensus 334 -------------------------~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 334 -------------------------HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred -------------------------chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 678888899999999999999999999998876 88999999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHH-hc-----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004336 636 EEMTKLIKKARNNASAYEKRS-EY-----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 709 (760)
Q Consensus 636 ~~l~~al~~~~~~~~~~~~~~-~~-----~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~ 709 (760)
...+.++...|+++......+ .. --.++|.+.+++++.++|....+-..+|.++...|++.+++..+++.+...
T Consensus 389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 999999999998887766552 11 135899999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhccC
Q 004336 710 ADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHE 759 (760)
Q Consensus 710 p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~~~ 759 (760)
||...-...+.+....+.+++|++.|..||.++|++..+++-+.++.+++
T Consensus 469 ~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 469 PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 98765556688888889999999999999999999999999999988654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-16 Score=184.93 Aligned_cols=342 Identities=9% Similarity=-0.059 Sum_probs=263.1
Q ss_pred HHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 385 a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
..+..+.+.+..|+++.|+..|+++++.+|+++ .+...+..++...|+.++|+.++
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~------~av~dll~l~~~~G~~~~A~~~~------------------ 91 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS------GQVDDWLQIAGWAGRDQEVIDVY------------------ 91 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch------hhHHHHHHHHHHcCCcHHHHHHH------------------
Confidence 455566666777799999999999999999995 34447777888889999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
++++...|........+|.++...|++++|++.|+++++.+|+++.++..++.++.+.++.++|+..++++...+|.+..
T Consensus 92 eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~ 171 (822)
T PRK14574 92 ERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN 171 (822)
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence 88884445555556666889999999999999999999999999999999999999999999999999999999999833
Q ss_pred HHHHHHHHHcccC--------------CCCcchhhh---------h----------------------------------
Q 004336 545 FFLKAYALADSSQ--------------DSSCSSTVV---------S---------------------------------- 567 (760)
Q Consensus 545 ~~~la~~l~~~~~--------------~~~~~~~~~---------~---------------------------------- 567 (760)
+..++.++..... +|...+... +
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr 251 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVR 251 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHh
Confidence 3555555532211 111111000 0
Q ss_pred --------------HHHHHHhhhHhhcc-----H------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---chHHHH
Q 004336 568 --------------LLEDALKCPSDRLR-----K------GQALNNLGSVYVDCGQLDLAADCYSNALKIR---HTRAHQ 619 (760)
Q Consensus 568 --------------~leeAl~~~~~~l~-----~------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~---~~~a~~ 619 (760)
..+.|+..+...+. | ..+....-.++...|++.++++.|+...... |+.+..
T Consensus 252 ~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 252 MAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 00111111111111 0 1112223345667889999999998877543 558899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccC----------cHHHHHHHHhcCCHHHHHHHHHHHHhhCC-------------
Q 004336 620 GLARVHFLKNNKTTAYEEMTKLIKKARN----------NASAYEKRSEYCDRELTRADLEMVTQLDP------------- 676 (760)
Q Consensus 620 ~La~~~~~~g~~~~A~~~l~~al~~~~~----------~~~~~~~~~~~~~~~~A~~~l~kal~l~p------------- 676 (760)
..|..|...+++++|...|++++...+. ...++......+++++|...+++.....|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 9999999999999999999999886531 13456666788999999999999988555
Q ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 677 --LRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 677 --~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
+.......++.++...|++.+|++.+++.+...|.+..+.+. |.++...|.+.+|...++.++.++|++..+.-
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~ 488 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILER 488 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHH
Confidence 223456778999999999999999999999999999988855 99999999999999999999999999887653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-18 Score=178.41 Aligned_cols=239 Identities=16% Similarity=0.131 Sum_probs=206.6
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
-..|.++...|..++..|++-.|...|++++.++|.+. ..|..++.+|....+.++-...|
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~------~lyI~~a~~y~d~~~~~~~~~~F------------- 383 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN------SLYIKRAAAYADENQSEKMWKDF------------- 383 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc------hHHHHHHHHHhhhhccHHHHHHH-------------
Confidence 34578888899999999999999999999999999885 66888999999999999988888
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.++..++|.++++|+..|.+++-++++++|+..|++++.++|++..++..++.+.+++++++++...|+.+++..
T Consensus 384 -----~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF 458 (606)
T KOG0547|consen 384 -----NKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF 458 (606)
T ss_pred -----HHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HH
Q 004336 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RA 617 (760)
Q Consensus 540 p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a 617 (760)
|+. ++.++..|.++.++++|++|++.|..++.+.|. ..
T Consensus 459 P~~----------------------------------------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 459 PNC----------------------------------------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred CCC----------------------------------------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 998 788888899999999999999999999987665 11
Q ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004336 618 ------HQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 691 (760)
Q Consensus 618 ------~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~ 691 (760)
+.+-|.+..+ | -+++..|+..+++|+++||..-.++..||.+..+
T Consensus 499 ~v~~~plV~Ka~l~~q---w--------------------------k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQ---W--------------------------KEDINQAENLLRKAIELDPKCEQAYETLAQFELQ 549 (606)
T ss_pred cccchhhhhhhHhhhc---h--------------------------hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 1122211111 1 1456888888999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCC
Q 004336 692 SHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 692 ~g~~~eAi~~l~kal~~~p~ 711 (760)
+|+.++|+++|+++..+...
T Consensus 550 ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 550 RGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999876544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-17 Score=188.09 Aligned_cols=247 Identities=12% Similarity=-0.009 Sum_probs=195.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHc---------cCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 397 KEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHI---------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 397 g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~---------g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
+++++|+..|+++++++|+++ .++..+|.++... +++++|...+ +++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a------~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~------------------~~A 330 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSI------APYCALAECYLSMAQMGIFDKQNAMIKAKEHA------------------IKA 330 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHcCCcccchHHHHHHHHH------------------HHH
Confidence 467899999999999999996 7888888776543 3377888888 999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHH
Q 004336 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 547 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~ 547 (760)
++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~----- 405 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR----- 405 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-c--hHHHHHHHHH
Q 004336 548 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR-H--TRAHQGLARV 624 (760)
Q Consensus 548 la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~-~--~~a~~~La~~ 624 (760)
...+..++.+++..|++++|+..++++++.. | +.++..+|.+
T Consensus 406 -----------------------------------~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~ 450 (553)
T PRK12370 406 -----------------------------------AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF 450 (553)
T ss_pred -----------------------------------hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 4444555666777899999999999998754 3 3678899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 625 HFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSR 704 (760)
Q Consensus 625 ~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~k 704 (760)
+...|++++|...+.++.... |........++..|...|+ +|...+++
T Consensus 451 l~~~G~~~eA~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~--~a~~~l~~ 498 (553)
T PRK12370 451 LSLKGKHELARKLTKEISTQE------------------------------ITGLIAVNLLYAEYCQNSE--RALPTIRE 498 (553)
T ss_pred HHhCCCHHHHHHHHHHhhhcc------------------------------chhHHHHHHHHHHHhccHH--HHHHHHHH
Confidence 999999988777776654443 4444555566777777763 66666666
Q ss_pred HHHc---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 705 AIAF---KADLHLLHLRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 705 al~~---~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
.++. .+.+.. ....++.-.|+.+.|... +++.+.+
T Consensus 499 ll~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 499 FLESEQRIDNNPG--LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHhhHhhcCch--HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 5442 222221 245556556777666665 6655543
|
|
| >KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-19 Score=184.24 Aligned_cols=145 Identities=22% Similarity=0.318 Sum_probs=130.1
Q ss_pred CccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCC--CChhhH
Q 004336 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNG--VTPNLL 255 (760)
Q Consensus 178 ~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~--~~~~~v 255 (760)
++...||+|+|++++|||||++||+.|.|||||++|||.|+.+..|.|. ..+.+++++++.|+|||++.. +..+..
T Consensus 41 ~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq--~t~~eAF~~lLrYiYtg~~~l~~~~ed~l 118 (620)
T KOG4350|consen 41 SEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQ--ETNSEAFRALLRYIYTGKIDLAGVEEDIL 118 (620)
T ss_pred cCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccc--cccHHHHHHHHHHHhhcceecccchHHHH
Confidence 3457899999999999999999999999999999999999999999996 678999999999999999952 568899
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchh
Q 004336 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVV 325 (760)
Q Consensus 256 ~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~ 325 (760)
.+.|..|+++++..|..+..+||+.-+ ..+|...+++.|...+-+.|...|+.|.-++-.+.+..+.|.
T Consensus 119 ld~LslAh~Ygf~~Le~aiSeYl~~iL-~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn 187 (620)
T KOG4350|consen 119 LDYLSLAHRYGFIQLETAISEYLKEIL-KNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFN 187 (620)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHH-cccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchh
Confidence 999999999999999999999999988 678888899999999999999999999877766555544443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.8e-16 Score=170.02 Aligned_cols=306 Identities=13% Similarity=0.006 Sum_probs=231.8
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
...++...+..|.+.+..|+|+.|++...+.-...+ ++ .-.+...+....+.|+++.|..++
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p-----~l~~llaA~aA~~~g~~~~A~~~l------------ 141 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QP-----VVNYLLAAEAAQQRGDEARANQHL------------ 141 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-ch-----HHHHHHHHHHHHHCCCHHHHHHHH------------
Confidence 345677788889999999999999977776544332 33 133344466669999999999999
Q ss_pred CcHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 459 GSLSVIYQMLESDAPKGV-LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.++.+.+|++.. .....+.++...|++++|+..++++.+.+|+++.++..++.+|...|++++|+..+.+..+
T Consensus 142 ------~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 142 ------ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred ------HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999998854 4445699999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcc
Q 004336 538 MKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK--IRH 614 (760)
Q Consensus 538 l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~--~~~ 614 (760)
..+.. +....+- ..++..+........+-+...+.++..-+ .+.
T Consensus 216 ~~~~~~~~~~~l~---------------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~ 262 (398)
T PRK10747 216 AHVGDEEHRAMLE---------------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ 262 (398)
T ss_pred cCCCCHHHHHHHH---------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC
Confidence 76554 1110000 01111111111222233333333333222 223
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH--HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 004336 615 TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR--SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDS 692 (760)
Q Consensus 615 ~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~--~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~ 692 (760)
+.+...++..+...|+.++|...+++.++..+ +....... ...++.++++..+++.++.+|+++..+..+|.++...
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 36777888888888888888888888888444 33322221 2347888999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 693 HKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 693 g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
|++++|.++|+++++..|++......+.++.+.|+.++|..+|++++.+.
T Consensus 342 ~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999887778999999999999999999998754
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-17 Score=171.84 Aligned_cols=230 Identities=14% Similarity=0.005 Sum_probs=176.2
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
..+.++..+.+++...|-.+ ......++.+|.++...|++++|+..+ .++++.+|+++.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~--~~~a~~~~~~g~~~~~~g~~~~A~~~~------------------~~Al~l~P~~~~a 100 (296)
T PRK11189 41 QQEVILARLNQILASRDLTD--EERAQLHYERGVLYDSLGLRALARNDF------------------SQALALRPDMADA 100 (296)
T ss_pred HHHHHHHHHHHHHccccCCc--HhhHHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHcCCCCHHH
Confidence 66778888888886444332 111467888999999999999999888 9999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccC
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 557 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~ 557 (760)
|+.+|.++...|++++|+..|+++++++|++..++.++|.+++..|++++|+..++++++.+|++
T Consensus 101 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~--------------- 165 (296)
T PRK11189 101 YNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND--------------- 165 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHH
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEE 637 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~ 637 (760)
+... ....+....+++++|+..|.++....++..+. .+.++...|+..++ ..
T Consensus 166 -------------------------~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 166 -------------------------PYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TL 217 (296)
T ss_pred -------------------------HHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HH
Confidence 2100 11122345678999999998777654433332 45666667766443 23
Q ss_pred HHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Q 004336 638 MTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH 713 (760)
Q Consensus 638 l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~ 713 (760)
++.+ ...++...+++|....+|+++|.++.+.|++++|+.+|+++++.+|.+.
T Consensus 218 ~~~~-----------------------~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 218 MERL-----------------------KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred HHHH-----------------------HhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 3322 2222334455677788999999999999999999999999999997443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-16 Score=163.31 Aligned_cols=355 Identities=16% Similarity=0.160 Sum_probs=279.9
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhc-c---------
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD-R--------- 451 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~-~--------- 451 (760)
+...+..+|..+.+.|.|++|+..|+......|+. -+-++|-+++...|+-++-.+.|+..- -
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~-------~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky 347 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNF-------IAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY 347 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHHhCccH-------HhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc
Confidence 34556788999999999999999999999999998 455567778888888777666553211 1
Q ss_pred ccccCCcCcHHHHHHHHHh-----------------------------CCC--------------------cHHHHHHHH
Q 004336 452 WSSVDDIGSLSVIYQMLES-----------------------------DAP--------------------KGVLYFRQS 482 (760)
Q Consensus 452 ~~~~~d~~sl~~~~~al~~-----------------------------~p~--------------------~~~~~~~la 482 (760)
-+..+|+.. ..+.+++.. .|+ -.++-.+.+
T Consensus 348 i~~~ddp~~-~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 348 IKEKDDPDD-NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred cCCcCCcch-HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 011222220 001111110 011 112233455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHC--CCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCC
Q 004336 483 LLLLRLNCPEAAMRSLQLARQHAASDH-ERLVYEGWILYDT--SHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQD 558 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~~p~~~-~a~~~Lg~i~~~~--g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~ 558 (760)
.-|++.|+++.|++.++-.-+.+.... .+-.+|..+++.+ .++.+|.++...++.++..+ .+..+.|.+....
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~n--- 503 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFAN--- 503 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeec---
Confidence 688899999999998876554443332 3455666666664 47889999999999998888 7777777776666
Q ss_pred CCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcchHHHHHHHHHHHHcCCHH
Q 004336 559 SSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALK--IRHTRAHQGLARVHFLKNNKT 632 (760)
Q Consensus 559 ~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~--~~~~~a~~~La~~~~~~g~~~ 632 (760)
|.+++|.+.|..++.. .++++++|..+..+|++++|+++|-+.-. .+...+++.++.+|..+.+..
T Consensus 504 --------gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 504 --------GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred --------CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 9999999999999765 88999999999999999999999988665 455699999999999999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 633 TAYEEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 633 ~A~~~l~~al~~~~~~~~~~~~~~~----~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
+|++++.++...-|+++.+...++. .|+..+|.+.+-...+..|.+.+..-+||.-|....=+++|+.+|+++--+
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 9999999999999988887777653 377888999988889999999999999999999999999999999999999
Q ss_pred CCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 709 KADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 709 ~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
.|+...+.+. +.++.+.|+|++|.+.|+..-...|.+-+.+.++-|+
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 9998888755 8888899999999999999999999999999887775
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-16 Score=165.25 Aligned_cols=267 Identities=15% Similarity=0.104 Sum_probs=185.8
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
.+.|.+...+.|+++|+..|+.+++.+|-.. +-......++.-..+-.+ +.++ .+.
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl------~dmdlySN~LYv~~~~sk-Ls~L-----------------A~~ 321 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRL------DDMDLYSNVLYVKNDKSK-LSYL-----------------AQN 321 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc------hhHHHHhHHHHHHhhhHH-HHHH-----------------HHH
Confidence 4556677777799999999999999998763 333333333222222111 1122 044
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHH
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAF 545 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~ 545 (760)
+...+.-.++...-.|+.|.-.++.++|+.+|++|++++|....+|..+|.-|..+.+...|+..|++|++++|.+ .+|
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAW 401 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAW 401 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHH
Confidence 4455555556666667777777777777777777777777777777777777777777777777777777777776 666
Q ss_pred HHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh--ccH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHH
Q 004336 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--LRK--GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQ 619 (760)
Q Consensus 546 ~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--l~~--~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~ 619 (760)
+.+|++|.-. +...=|+-+|+++ ++| ...|..||.+|.+.++.++|+.+|.+++..+.+ .++.
T Consensus 402 YGLGQaYeim-----------~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 402 YGLGQAYEIM-----------KMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred hhhhHHHHHh-----------cchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 6666666665 4455555555555 222 788888999999999999999999998887666 7888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Q 004336 620 GLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAI 699 (760)
Q Consensus 620 ~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi 699 (760)
.||.+|.+.++..+|..+|++.++... .....+|....+...||.-+.+.+++++|.
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~-----------------------~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSE-----------------------LEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------------hhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 889999998888888888887766432 111233444456667899999999999999
Q ss_pred HHHHHHHHcCCC
Q 004336 700 AELSRAIAFKAD 711 (760)
Q Consensus 700 ~~l~kal~~~p~ 711 (760)
.+..+++...+.
T Consensus 528 ~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 528 YYATLVLKGETE 539 (559)
T ss_pred HHHHHHhcCCch
Confidence 999888876443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-13 Score=150.69 Aligned_cols=368 Identities=14% Similarity=0.101 Sum_probs=298.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHH
Q 004336 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 443 (760)
Q Consensus 364 ~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~ 443 (760)
.+..+|++.+++.....+.-.++.++- -|+.|...+.++-+.-|..+ +.|..-+.+-...|+.+.-.
T Consensus 394 darilL~rAveccp~s~dLwlAlarLe-------tYenAkkvLNkaRe~iptd~------~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 394 DARILLERAVECCPQSMDLWLALARLE-------TYENAKKVLNKAREIIPTDR------EIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHH-------HHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHhcCCHHHHH
Confidence 377889999999888777777777777 89999999999999999997 66666777777777766544
Q ss_pred HHHhhhcc-------------c----cccCCcC-----------------------------------------cHHHHH
Q 004336 444 CWLQLYDR-------------W----SSVDDIG-----------------------------------------SLSVIY 465 (760)
Q Consensus 444 ~~l~l~~~-------------~----~~~~d~~-----------------------------------------sl~~~~ 465 (760)
.++..+-. | .+..+.+ +.++|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 33321110 0 0000000 345577
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EA 544 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a 544 (760)
.+++..|.+-.+|.+.+..-..-|-.+.-...+++++...|.....|...+..+...|+...|...+.++++.+|++ +.
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 88888898889999888888888999999999999999999988889999999999999999999999999999999 88
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHH
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQ 619 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~ 619 (760)
|+....+.... ..+++|...+.++... ..+|..-+.+...+++.++|++.++++++..|. ..|.
T Consensus 621 wlaavKle~en-----------~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~l 689 (913)
T KOG0495|consen 621 WLAAVKLEFEN-----------DELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWL 689 (913)
T ss_pred HHHHHHHhhcc-----------ccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHH
Confidence 88888887777 7888888888887443 678888888888999999999999999998777 8899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004336 620 GLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 620 ~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~ 695 (760)
.+|+++.++++.+.|...|...++..|....++..++.. |..-+|...++++.-.+|++...|......-.+.|+.
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 999999999999999999999999999887777666543 6778899999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHcCCCcHHHH------------------------------HH-HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004336 696 NEAIAELSRAIAFKADLHLLH------------------------------LR-AAFHEHTGDVLGALRDCRAALSVDPN 744 (760)
Q Consensus 696 ~eAi~~l~kal~~~p~~~~~~------------------------------l~-a~~~~~~g~~~~A~~~~~~aL~l~P~ 744 (760)
++|.....+|++-.|.+..+| +. +..+....++++|.+.|.+++..+|+
T Consensus 770 ~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 999999999998777554333 11 33333447899999999999999999
Q ss_pred cHHHHHHHHHh
Q 004336 745 DQEMLELHSRV 755 (760)
Q Consensus 745 ~~~~l~~~~r~ 755 (760)
+.+++..+-+.
T Consensus 850 ~GD~wa~fykf 860 (913)
T KOG0495|consen 850 NGDAWAWFYKF 860 (913)
T ss_pred cchHHHHHHHH
Confidence 99987665443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.9e-18 Score=178.16 Aligned_cols=257 Identities=22% Similarity=0.198 Sum_probs=99.9
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhC--CCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLS--PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~--P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
.++.+++..|++++|.+.+.+.+... |+++ ..+..+|.+....++++.|+..+ +
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~------~~~~~~a~La~~~~~~~~A~~ay------------------~ 68 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDP------EYWRLLADLAWSLGDYDEAIEAY------------------E 68 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc------ccccccccccccccccccccccc------------------c
Confidence 44666666678888888886554443 6664 66677888888888888888888 7
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc--CChH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK--RSFE 543 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~--p~~~ 543 (760)
+++..++.++..+.+++.+ ...+++++|+..++++.+.. .++..+.....++...|+++++...++++.... +.+
T Consensus 69 ~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 145 (280)
T PF13429_consen 69 KLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS- 145 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T--
T ss_pred ccccccccccccccccccc-cccccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC-
Confidence 8888887777777777777 68888888888888877655 346666777777888888888888888766433 222
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHH
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGL 621 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~L 621 (760)
...+..+|.++.+.|++++|+..|+++++.+|. .+...+
T Consensus 146 ---------------------------------------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l 186 (280)
T PF13429_consen 146 ---------------------------------------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNAL 186 (280)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 567778888888888888888888888887776 677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~ 701 (760)
+.++...|+++++...++.. ....|.++..+..+|.++...|++++|+..
T Consensus 187 ~~~li~~~~~~~~~~~l~~~------------------------------~~~~~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRL------------------------------LKAAPDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHH------------------------------HHH-HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHH------------------------------HHHCcCHHHHHHHHHHHhcccccccccccc
Confidence 88888888776655555433 333356666777889999999999999999
Q ss_pred HHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHh
Q 004336 702 LSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 702 l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
|++++...|+++.+... +.++...|+.++|.+++++++.
T Consensus 237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 237 LEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 99999999988877754 8888888999999999888875
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.2e-16 Score=178.84 Aligned_cols=222 Identities=15% Similarity=-0.018 Sum_probs=182.3
Q ss_pred cCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC
Q 004336 437 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL---------NCPEAAMRSLQLARQHAAS 507 (760)
Q Consensus 437 g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~Ai~~l~kal~~~p~ 507 (760)
+.+++|+.++ +++++.+|+++.++..+|.++... +++++|+..++++++++|+
T Consensus 275 ~~~~~A~~~~------------------~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 275 YSLQQALKLL------------------TQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHHHH------------------HHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 3456788888 999999999999999999887643 3489999999999999999
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHH
Q 004336 508 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 587 (760)
Q Consensus 508 ~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~ 587 (760)
++.++..+|.++...|++++|+..|+++++++|++ +.+++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~----------------------------------------~~a~~ 376 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS----------------------------------------ADIKY 376 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------------------------HHHHH
Confidence 99999999999999999999999999999999999 78899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHH
Q 004336 588 NLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTR 665 (760)
Q Consensus 588 ~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~ 665 (760)
.+|.++...|++++|+..|+++++.+|. ..+..++.+++..|++++|+..+++++...
T Consensus 377 ~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------------------- 436 (553)
T PRK12370 377 YYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-------------------- 436 (553)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--------------------
Confidence 9999999999999999999999998887 445556666777887766666655444332
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHh---c
Q 004336 666 ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALS---V 741 (760)
Q Consensus 666 ~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~---l 741 (760)
.|+.+..+.++|.++...|++++|+..+.++....|+..... ..+..|...|+ +|...+++.++ .
T Consensus 437 ---------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 437 ---------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred ---------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 256677788899999999999999999999888888766555 44667777674 77776766654 3
Q ss_pred CCCcHH
Q 004336 742 DPNDQE 747 (760)
Q Consensus 742 ~P~~~~ 747 (760)
.|.++.
T Consensus 506 ~~~~~~ 511 (553)
T PRK12370 506 IDNNPG 511 (553)
T ss_pred hhcCch
Confidence 444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=147.54 Aligned_cols=206 Identities=17% Similarity=0.086 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
..+...+|.-|++.|++..|...++++++++|++..+|..++.+|...|+.+.|-+.|+++++++|++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~------------ 102 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN------------ 102 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc------------
Confidence 45778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cchHHHHHHHHHHHHcCC
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI----RHTRAHQGLARVHFLKNN 630 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----~~~~a~~~La~~~~~~g~ 630 (760)
+++++|.|..+..+|+|++|...|++|+.- .+..++-++|.|..+.|+
T Consensus 103 ----------------------------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 103 ----------------------------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred ----------------------------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 899999999999999999999999999982 333899999999999999
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 004336 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 631 ~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p 710 (760)
++.|... |+++++++|+.+.....++...+..|++..|..++++.....+
T Consensus 155 ~~~A~~~------------------------------l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 155 FDQAEEY------------------------------LKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred chhHHHH------------------------------HHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 8555554 4555666677777777889999999999999999998887655
Q ss_pred Cc-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 711 DL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 711 ~~-~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
-. ..++++..+-...||.+.|-++=.+.-...|...+.-.
T Consensus 205 ~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 205 AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 43 46778899999999999999888888888998876543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=154.22 Aligned_cols=201 Identities=15% Similarity=0.074 Sum_probs=181.7
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
..+..++.+|..++..|++++|+..+++++..+|++. .++..+|.++...|++++|..++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~-------------- 88 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY------LAYLALALYYQQLGELEKAEDSF-------------- 88 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCCHHHHHHHH--------------
Confidence 4567788899999999999999999999999999985 88899999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--ASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~--p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
++++...|.+...++.+|.++...|++++|++.+++++... +.....+..+|.++...|++++|...+++++..
T Consensus 89 ----~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 89 ----RRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred ----HHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999854 556778999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--H
Q 004336 539 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--R 616 (760)
Q Consensus 539 ~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~ 616 (760)
+|++ ..++..+|.++...|++++|...+++++...+. .
T Consensus 165 ~~~~----------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 165 DPQR----------------------------------------PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred CcCC----------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 9988 677888999999999999999999999986444 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004336 617 AHQGLARVHFLKNNKTTAYEEMTKLIKKA 645 (760)
Q Consensus 617 a~~~La~~~~~~g~~~~A~~~l~~al~~~ 645 (760)
.+..++.++...|+.++|..+.+.+....
T Consensus 205 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 205 SLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 77788999999999999998887765543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-15 Score=153.51 Aligned_cols=201 Identities=18% Similarity=0.136 Sum_probs=173.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 552 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l 552 (760)
..+..++.+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------- 98 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN---------- 98 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------
Confidence 3478899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc----hHHHHHHHHHHHHc
Q 004336 553 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH----TRAHQGLARVHFLK 628 (760)
Q Consensus 553 ~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~----~~a~~~La~~~~~~ 628 (760)
..++.++|.++...|++++|+..|++++...+ ...+..+|.++...
T Consensus 99 ------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 99 ------------------------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred ------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 67888899999999999999999999997421 26788899999999
Q ss_pred CCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 629 NNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 629 g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
|++++|...+.+++ ..+|.+...+..+|.++...|++++|+..+++++..
T Consensus 149 g~~~~A~~~~~~~~------------------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 149 GDFDKAEKYLTRAL------------------------------QIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred CCHHHHHHHHHHHH------------------------------HhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 98866666666554 445556667778899999999999999999999998
Q ss_pred CCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004336 709 KADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDP 743 (760)
Q Consensus 709 ~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P 743 (760)
.|+++... ..+.++...|+.++|....+.+....|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 199 YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 77776544 558888888999999998888776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-15 Score=160.63 Aligned_cols=304 Identities=17% Similarity=0.121 Sum_probs=224.7
Q ss_pred HHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004336 427 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 506 (760)
Q Consensus 427 ~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p 506 (760)
...|......|+++.|+.++ ..++.++|.+...|.+.+.+|..+|+|++|++.-.+.++++|
T Consensus 6 k~kgnaa~s~~d~~~ai~~~------------------t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p 67 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLF------------------TEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP 67 (539)
T ss_pred HHHHHhhcccccHHHHHHHH------------------HHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34677888999999999999 999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHccc----------------CCCCc-----chh
Q 004336 507 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSS----------------QDSSC-----SST 564 (760)
Q Consensus 507 ~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~----------------~~~~~-----~~~ 564 (760)
+.+..|..+|..+.-+|+|++|+..|.+.++.+|++ ..+..++.++.... .++.. ...
T Consensus 68 ~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 68 DWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred chhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 999999999999999999999999999999999999 66666665552210 00000 000
Q ss_pred h-------------------hhHHHHHHhhhH---------------------------------hhc------cHHHHH
Q 004336 565 V-------------------VSLLEDALKCPS---------------------------------DRL------RKGQAL 586 (760)
Q Consensus 565 ~-------------------~~~leeAl~~~~---------------------------------~~l------~~~~a~ 586 (760)
. ..++..+.-... +.. ..+...
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 0 000011100000 000 014456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHH-----------
Q 004336 587 NNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEK----------- 654 (760)
Q Consensus 587 ~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~----------- 654 (760)
-.+|.......++..|++.|..+++++.. ..+.+.+-+|+..|.+.+.+....++++.....-.-+..
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 67888888888888888888888887733 556667777777777777776666666554421111111
Q ss_pred HHhcCCHHHHHHHHHHHH--------------------------hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 655 RSEYCDRELTRADLEMVT--------------------------QLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 655 ~~~~~~~~~A~~~l~kal--------------------------~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
....++++.|+..|++++ -++|.-..--..-|..++..|+|.+|+..|.+++..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 111134455555554443 345555555667799999999999999999999999
Q ss_pred CCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 004336 709 KADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEM 748 (760)
Q Consensus 709 ~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~ 748 (760)
+|+++.++ -++.+|.++|++..|+++.+++++++|+....
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 99999888 55999999999999999999999999987754
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-15 Score=151.80 Aligned_cols=280 Identities=15% Similarity=0.140 Sum_probs=235.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.-.+.+|.-+...|++..|+..+ ..+++.+|++..++|+.|.+|+..|+-..|+..+.+.++
T Consensus 39 ekhlElGk~lla~~Q~sDALt~y------------------HaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHY------------------HAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH------------------HHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 55666888888899999999999 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh----HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF----EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 579 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~----~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~ 579 (760)
+.|+...+....|.++.++|++++|...|+.++..+|++ +++..++.+-.
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e-------------------------- 154 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE-------------------------- 154 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH--------------------------
Confidence 999999999999999999999999999999999999977 33333322211
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH-
Q 004336 580 LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS- 656 (760)
Q Consensus 580 l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~- 656 (760)
-..+......+...|++..|+......+++.|- ..+...+.+|...|++..|+..++.+-++..++.......+
T Consensus 155 ---~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~ 231 (504)
T KOG0624|consen 155 ---HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQ 231 (504)
T ss_pred ---HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 234444556677889999999999999998887 66778899999999999999999999998887766655543
Q ss_pred ---hcCCHHHHHHHHHHHHhhCCCChHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH---
Q 004336 657 ---EYCDRELTRADLEMVTQLDPLRVYPYRY------------RAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR--- 718 (760)
Q Consensus 657 ---~~~~~~~A~~~l~kal~l~p~~~~~~~~------------La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~--- 718 (760)
..|+.+.++..++..+.++|+.-..+-. -+......++|.++++..++.+...|....+.++
T Consensus 232 L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r 311 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFR 311 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeh
Confidence 3489999999999999999998654421 1334567789999999999999999996655422
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 719 --AAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 719 --a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
-.++..-|++.+|++.+.++|.++|++.+++.
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 55666779999999999999999999888763
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-14 Score=154.65 Aligned_cols=353 Identities=14% Similarity=0.054 Sum_probs=261.9
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHH----------------h
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL----------------Q 447 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l----------------~ 447 (760)
..|..-+..+..++.++-|+..|..+|+.+|....+ |...+..-...|..+.-..++ -
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl------Wlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ 590 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL------WLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMY 590 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHH
Confidence 356666666677778888888888888888877633 333333333444444333333 1
Q ss_pred hhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Q 004336 448 LYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEE 527 (760)
Q Consensus 448 l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~ee 527 (760)
...+|.+.+-+.+...+.++++.+|.+.++|+.--.+..+..+++.|...|.++....|. ..+|+.-+.+...+++.++
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHH
Confidence 233444444444555568888888888888887777888888888888888888776553 4667777777788888888
Q ss_pred HHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHH
Q 004336 528 GLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLA 602 (760)
Q Consensus 528 Al~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA 602 (760)
|+..++++++..|++ ..|..+|.++... +..+.|.+.|...++. ...|..++.+-...|+.-.|
T Consensus 670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~-----------~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFHKLWLMLGQIEEQM-----------ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHHhHHHHHH-----------HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence 888888888888888 8888888888887 8888888888888665 67788888888888888888
Q ss_pred HHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Q 004336 603 ADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVY 680 (760)
Q Consensus 603 ~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~ 680 (760)
...++++.-.+|. ..|....+.-.+.|+.+.|...+.++++..|..+.++.......-...-......|++....++.
T Consensus 739 R~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph 818 (913)
T KOG0495|consen 739 RSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH 818 (913)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch
Confidence 8888888877666 55666667777888888888888888888888877776543321111113334455566667778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 681 PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 681 ~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
.+...|..+....++++|.+.|.+++..+|++.+.| .--.++...|.-++-.+.+.+....+|.|.+.+...++
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 888899999999999999999999999999999888 33666777799999999999999999999988765443
|
|
| >PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=150.70 Aligned_cols=101 Identities=26% Similarity=0.452 Sum_probs=91.7
Q ss_pred CccceeEEEEec-CeEeehhHHHHhcCCHHHHhhccCC-CCCCccceeEecCCCCCHHHHHHHHhccccCccCCCC-hhh
Q 004336 178 DQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGS-FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT-PNL 254 (760)
Q Consensus 178 ~~~~~dv~~~~~-~~~~~~hr~~la~~s~yf~amf~~~-~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~-~~~ 254 (760)
++.+|||+|.++ +.+|+|||.+|+++|+||+.||.++ +.++...+|.++ ++++++++.+++|+|||++. ++ .++
T Consensus 7 ~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~Y~~~~~-~~~~~~ 83 (111)
T PF00651_consen 7 SNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP--DVSPEAFEAFLEYMYTGEIE-INSDEN 83 (111)
T ss_dssp HTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET--TSCHHHHHHHHHHHHHSEEE-EE-TTT
T ss_pred CCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc--cccccccccccccccCCccc-CCHHHH
Confidence 457899999999 7999999999999999999999998 788887789997 89999999999999999997 98 999
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHHhh
Q 004336 255 LLEILIFANKFCCERLKDACDRKLASL 281 (760)
Q Consensus 255 v~~ll~~a~~~~~~~~~~~c~~~l~~~ 281 (760)
+.+++.+|++|+++.|++.|..+|...
T Consensus 84 ~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 84 VEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999764
|
The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A .... |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-16 Score=157.48 Aligned_cols=234 Identities=18% Similarity=0.074 Sum_probs=206.7
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
.++|..|+..|.+.+|.+.++..|+..|.- +.+.+|+.+|.+..++..|+..+ .+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~-------dTfllLskvY~ridQP~~AL~~~------------------~~ 281 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-------DTFLLLSKVYQRIDQPERALLVI------------------GE 281 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch-------hHHHHHHHHHHHhccHHHHHHHH------------------hh
Confidence 467888888889999999999999998765 88999999999999999999999 99
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHH
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF 546 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~ 546 (760)
.+...|.+...+..++.++...+++++|.++|+.+++.+|.+.++...+|.-|+..|+.+-|+.+|++.+++.-.+
T Consensus 282 gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s---- 357 (478)
T KOG1129|consen 282 GLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS---- 357 (478)
T ss_pred hhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ch---HHHHHH
Q 004336 547 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HT---RAHQGL 621 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~--~~---~a~~~L 621 (760)
++.+.|+|.+.+..++++-++..|++|+... +. ++|+++
T Consensus 358 ------------------------------------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNl 401 (478)
T KOG1129|consen 358 ------------------------------------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNL 401 (478)
T ss_pred ------------------------------------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcc
Confidence 8899999999999999999999999999842 22 899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~ 701 (760)
|.+....|++.-|. ..|+-++..||++.+++++||.+-.+.|+.++|..+
T Consensus 402 g~vaV~iGD~nlA~------------------------------rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAK------------------------------RCFRLALTSDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred ceeEEeccchHHHH------------------------------HHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 99998888885444 445555666777777788888888888888888888
Q ss_pred HHHHHHcCCCcHHH
Q 004336 702 LSRAIAFKADLHLL 715 (760)
Q Consensus 702 l~kal~~~p~~~~~ 715 (760)
+..|-...|+....
T Consensus 452 l~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 452 LNAAKSVMPDMAEV 465 (478)
T ss_pred HHHhhhhCcccccc
Confidence 88888888875533
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-15 Score=157.85 Aligned_cols=204 Identities=18% Similarity=0.117 Sum_probs=155.1
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
..+.+..|+.+|.++...|++++|+..|+++++++|+++ .++..+|.++...|++++|+..+
T Consensus 60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~------~a~~~lg~~~~~~g~~~~A~~~~------------ 121 (296)
T PRK11189 60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA------DAYNYLGIYLTQAGNFDAAYEAF------------ 121 (296)
T ss_pred cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHCCCHHHHHHHH------------
Confidence 346688899999999999999999999999999999996 99999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.++++.+|++..+++++|.++...|++++|++.|+++++.+|+++..... ..+....+++++|+..+++++..
T Consensus 122 ------~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 122 ------DSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred ------HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999843222 23445678999999999887754
Q ss_pred c-CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhc----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 539 K-RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL----RKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 539 ~-p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l----~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
. |+...+ +......+. . .. ...++.+.+.++... +...+|+++|.++...|++++|+.+|+++++.+
T Consensus 195 ~~~~~~~~---~~~~~~lg~--~--~~-~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGK--I--SE-ETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH---HHHHHHccC--C--CH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 332222 111111100 0 00 012222322222221 115678888888888888888888888888876
Q ss_pred ch
Q 004336 614 HT 615 (760)
Q Consensus 614 ~~ 615 (760)
|.
T Consensus 267 ~~ 268 (296)
T PRK11189 267 VY 268 (296)
T ss_pred Cc
Confidence 53
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-14 Score=161.53 Aligned_cols=305 Identities=13% Similarity=0.048 Sum_probs=243.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..+...|......|++++|..++ ..++..+|.++.+|+.+|.+|..+|+.+++...+-.|-.
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~------------------~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH 201 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEIL------------------MEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH 201 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH------------------HHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 45555666777889999999999 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
++|++.+-|..++....++|++++|.-+|.+|++.+|.+ +..+..+..+... |....|...+.+.++-
T Consensus 202 L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~-----------G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 202 LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT-----------GDLKRAMETFLQLLQL 270 (895)
T ss_pred cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-----------ChHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999 8999999999998 9999999998888332
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--c-
Q 004336 583 ---------GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAYEEMTKLIKKA--R- 646 (760)
Q Consensus 583 ---------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~~~l~~al~~~--~- 646 (760)
-+.-...+..+...++-+.|++.++.++..... ..+.-++.++....+++.|........... +
T Consensus 271 ~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d 350 (895)
T KOG2076|consen 271 DPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKD 350 (895)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCC
Confidence 233344577778888889999999999984332 677788999999999999988877654410 0
Q ss_pred --------------------------CcHHHHHHHH--hc--CCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCH
Q 004336 647 --------------------------NNASAYEKRS--EY--CDRELTRADLEMVTQLDP-LRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 647 --------------------------~~~~~~~~~~--~~--~~~~~A~~~l~kal~l~p-~~~~~~~~La~~~~~~g~~ 695 (760)
+...+..... .. .+..+++..+..--...| +++..+..++.+|.+.|++
T Consensus 351 ~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 351 DSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred hhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH
Confidence 1111111111 11 223333333322222223 4567889999999999999
Q ss_pred HHHHHHHHHHHHcCCCcH-HHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 696 NEAIAELSRAIAFKADLH-LLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 696 ~eAi~~l~kal~~~p~~~-~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
.+|+.++..+....+... .+|+. |.+|..+|.+++|++.|++++.+.|+|.++.-.++-+.+
T Consensus 431 ~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 431 KEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQ 494 (895)
T ss_pred HHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHH
Confidence 999999999988766544 45555 999999999999999999999999999998765555543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-15 Score=143.32 Aligned_cols=205 Identities=16% Similarity=0.121 Sum_probs=182.1
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+.+..++|.-|+.+|++..|...++++|+.+|++. .++..++.+|...|+.+.|.+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~------~a~~~~A~~Yq~~Ge~~~A~e~Y------------- 92 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY------LAHLVRAHYYQKLGENDLADESY------------- 92 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCChhhHHHHH-------------
Confidence 34566777888889999999999999999999999995 99999999999999999999999
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
++++.++|++++++.+.|..+..+|++++|+..|++|+.. .+.....+.++|.+..+.|+++.|...|+++++
T Consensus 93 -----rkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 93 -----RKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred -----HHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999975 356678999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--
Q 004336 538 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-- 615 (760)
Q Consensus 538 l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-- 615 (760)
++|++ +.....++...++.|+|..|..++++.....+.
T Consensus 168 ~dp~~----------------------------------------~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A 207 (250)
T COG3063 168 LDPQF----------------------------------------PPALLELARLHYKAGDYAPARLYLERYQQRGGAQA 207 (250)
T ss_pred hCcCC----------------------------------------ChHHHHHHHHHHhcccchHHHHHHHHHHhcccccH
Confidence 99999 777888899999999999999999888764333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN 648 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~ 648 (760)
+.+....++....|+.+.+..+=.++....|..
T Consensus 208 ~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 208 ESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 666667788888999988888877777777744
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.3e-17 Score=169.98 Aligned_cols=240 Identities=20% Similarity=0.128 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~--~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
..+.+|.++...|++++|++.+++.+.. .|++...|..+|.+....|++++|+..|++++..++..
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~------------ 77 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN------------ 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------------
Confidence 3457799999999999999999776554 48899999999999999999999999999999988777
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCCHHH
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTT 633 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La~~~~~~g~~~~ 633 (760)
+..+..++.+ ...+++++|+..++++.+..+. ..+.....++...|++++
T Consensus 78 ----------------------------~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 78 ----------------------------PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ----------------------------cccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHH
Confidence 3333444444 4555555555555555543332 344444555555556655
Q ss_pred HHHHHHHHHHhc--cCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 634 AYEEMTKLIKKA--RNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 634 A~~~l~~al~~~--~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
+...++++.... +.+...+..++ ..|+.++|+..++++++.+|+++.+...+++++...|+.+++.+.++....
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 555555544333 23333333222 235667777788888888889999999999999999999999998888888
Q ss_pred cCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 708 FKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 708 ~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
..|+++.++ ..+.++..+|++++|+..|+++++.+|+|+.++..|..+-.
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALE 259 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred HCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccc
Confidence 777777665 44888999999999999999999999999999888776643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-15 Score=160.48 Aligned_cols=228 Identities=14% Similarity=0.072 Sum_probs=201.1
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
..|+..+=..+--+.+...|+.+ -.|+.+|.-|...|++.+|..++ .++..++|..
T Consensus 290 el~~~n~Lf~lsh~LV~~yP~~a------~sW~aVg~YYl~i~k~seARry~------------------SKat~lD~~f 345 (611)
T KOG1173|consen 290 ELGKSNKLFLLSHKLVDLYPSKA------LSWFAVGCYYLMIGKYSEARRYF------------------SKATTLDPTF 345 (611)
T ss_pred HhcccchHHHHHHHHHHhCCCCC------cchhhHHHHHHHhcCcHHHHHHH------------------HHHhhcCccc
Confidence 33365555555568889999997 88999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
+.+|...|..+.-.|+.++|+.+|..|-++-|.......++|.-|..+++++-|...|.+|+.+.|++
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D------------ 413 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD------------ 413 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch---------HHHHHHHHHH
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---------RAHQGLARVH 625 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---------~a~~~La~~~ 625 (760)
+-+++.+|.+.+..+.|.+|..+|+.++..-+. ..+.+||.++
T Consensus 414 ----------------------------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 414 ----------------------------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred ----------------------------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 788999999999999999999999999952111 4688999999
Q ss_pred HHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 626 FLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRA 705 (760)
Q Consensus 626 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~ka 705 (760)
.+.+++++|+ ..+++++.+.|.++.++..+|.+|..+|+++.|++.|.++
T Consensus 466 Rkl~~~~eAI------------------------------~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 466 RKLNKYEEAI------------------------------DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHhhHHHHH------------------------------HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 9998885554 5555666777778888888899999999999999999999
Q ss_pred HHcCCCcHHHH
Q 004336 706 IAFKADLHLLH 716 (760)
Q Consensus 706 l~~~p~~~~~~ 716 (760)
+.++|++....
T Consensus 516 L~l~p~n~~~~ 526 (611)
T KOG1173|consen 516 LALKPDNIFIS 526 (611)
T ss_pred HhcCCccHHHH
Confidence 99999996444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-15 Score=162.85 Aligned_cols=234 Identities=12% Similarity=0.051 Sum_probs=170.9
Q ss_pred HHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004336 427 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 506 (760)
Q Consensus 427 ~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p 506 (760)
+..|..+.+.|...+|.-.| +.++..+|.++++|..||.+..+.++-..|+..++++++++|
T Consensus 289 f~eG~~lm~nG~L~~A~Laf------------------EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP 350 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAF------------------EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP 350 (579)
T ss_pred HHHHHHHHhcCCchHHHHHH------------------HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC
Confidence 45788888899999998888 999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHH
Q 004336 507 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQAL 586 (760)
Q Consensus 507 ~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~ 586 (760)
++.+++..||..|...|.-.+|+..+.+-|...|.+ .+ +...-.........+......+...
T Consensus 351 ~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y-~~--l~~a~~~~~~~~~~s~~~~~~l~~i-------------- 413 (579)
T KOG1125|consen 351 TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKY-VH--LVSAGENEDFENTKSFLDSSHLAHI-------------- 413 (579)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc-hh--ccccCccccccCCcCCCCHHHHHHH--------------
Confidence 999999999999999999999999999999988766 00 0000000000000000000111111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHh----c
Q 004336 587 NNLGSVYVDCGQLDLAADCYSNALKIRH----TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----Y 658 (760)
Q Consensus 587 ~~Lg~~y~~~g~~~eA~~~~~~Al~~~~----~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~----~ 658 (760)
.+.|..+....+ +++...||.+|+..|+|+.|+++|+.++...|++..+++.++. -
T Consensus 414 ----------------~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~ 477 (579)
T KOG1125|consen 414 ----------------QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANG 477 (579)
T ss_pred ----------------HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCC
Confidence 122222222222 1555556666666666666666666666666666555555432 2
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
.+..+|+..|.+|+++.|....++++||..++..|.|++|+++|-.|+.+.+.
T Consensus 478 ~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 478 NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 35578888888999999999999999999999999999999999999987654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-13 Score=161.90 Aligned_cols=323 Identities=11% Similarity=-0.012 Sum_probs=256.2
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
|..+=..+...|++++|...|+.+.+...... ...+..+-..+.+.|+.++|..++ .
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD-----~~tynsLI~~y~k~G~vd~A~~vf------------------~ 496 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKAD-----CKLYTTLISTCAKSGKVDAMFEVF------------------H 496 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhCcCHHHHHHHH------------------H
Confidence 33444456677799999999998877653322 367777888888999999999888 7
Q ss_pred HHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hc
Q 004336 466 QMLESDA-PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQ----MK 539 (760)
Q Consensus 466 ~al~~~p-~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~-p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~----l~ 539 (760)
++..... .+...|..+...|.+.|++++|++.|+++.+.. ..+...|..+...+.+.|++++|.+.+++... +.
T Consensus 497 eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 497 EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 7776553 367888899999999999999999999987653 23467888899999999999999999999875 45
Q ss_pred CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 004336 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-----GQALNNLGSVYVDCGQLDLAADCYSNALKI-- 612 (760)
Q Consensus 540 p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-- 612 (760)
|+...|..+...+... +.+++|.+.+....+. ...|+.+...|.+.|++++|...|++..+.
T Consensus 577 PD~vTynaLI~ay~k~-----------G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv 645 (1060)
T PLN03218 577 PDHITVGALMKACANA-----------GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645 (1060)
T ss_pred CcHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 7767888888888888 8899999999888433 678999999999999999999999998874
Q ss_pred cch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CcHHHHHH----HHhcCCHHHHHHHHHHHHhhC-CCChHHHHHH
Q 004336 613 RHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR-NNASAYEK----RSEYCDRELTRADLEMVTQLD-PLRVYPYRYR 685 (760)
Q Consensus 613 ~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~~~-~~~~~~~~----~~~~~~~~~A~~~l~kal~l~-p~~~~~~~~L 685 (760)
.|+ ..+..+...|.+.|++++|.+.++.+.+... .+...|.. ....|+.++|...|++..... ..+...|..+
T Consensus 646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~L 725 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 455 7888889999999999999999999887653 34444443 345689999999999886542 2346779999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 686 AAVLMDSHKENEAIAELSRAIA--FKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 686 a~~~~~~g~~~eAi~~l~kal~--~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
...|.+.|++++|++.+++... ..|+...+......+.+.|++++|.+.+.++++..
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999998765 45776665544556777799999999999998744
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-15 Score=154.87 Aligned_cols=269 Identities=16% Similarity=0.122 Sum_probs=197.2
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
..+.|......|..++..++|.+|+..|..|+...|++. ..|...+..++..++++.|....
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a------~yy~nRAa~~m~~~~~~~a~~da------------ 106 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNA------SYYSNRAATLMMLGRFEEALGDA------------ 106 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccch------hhhchhHHHHHHHHhHhhcccch------------
Confidence 455666677788888889999999999999999999995 77777889999999999999888
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------HhC------CCcHHHHHHHHHHHH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR------------QHA------ASDHERLVYEGWILY 520 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal------------~~~------p~~~~a~~~Lg~i~~ 520 (760)
++.++++|.....+.+.+.++...++..+|.+.++..- .+. |.-..+...-+.++.
T Consensus 107 ------r~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~ 180 (486)
T KOG0550|consen 107 ------RQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLA 180 (486)
T ss_pred ------hhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhh
Confidence 88888999988888999999998888888887665211 001 222334455567777
Q ss_pred HCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHH
Q 004336 521 DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLD 600 (760)
Q Consensus 521 ~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~ 600 (760)
..|++++|.+.--..+++++.+ ..+++..|.++...++.+
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n----------------------------------------~~al~vrg~~~yy~~~~~ 220 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATN----------------------------------------AEALYVRGLCLYYNDNAD 220 (486)
T ss_pred hcccchhHHHHHHHHHhcccch----------------------------------------hHHHHhcccccccccchH
Confidence 7778887777777777777777 667777778888888888
Q ss_pred HHHHHHHHHHhhcch--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC----cHHHHHHHH----hc
Q 004336 601 LAADCYSNALKIRHT--------------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN----NASAYEKRS----EY 658 (760)
Q Consensus 601 eA~~~~~~Al~~~~~--------------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~----~~~~~~~~~----~~ 658 (760)
.|+..|+++++.+|. ..+-.-|.-.++.|++..|.+.|..+|.++|. ++..|..++ ..
T Consensus 221 ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL 300 (486)
T KOG0550|consen 221 KAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL 300 (486)
T ss_pred HHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc
Confidence 888888888887665 34445566667777777777777777777773 333343332 33
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
|+..+|+...+.++.+||....++...|.++...++|++|.+.|+++++...+
T Consensus 301 grl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 301 GRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred CCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 56666666666666666666666666677777777777777777777766555
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-13 Score=152.12 Aligned_cols=351 Identities=16% Similarity=0.047 Sum_probs=238.3
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhC--CCCcchhchHHHHHH-HHHHHHHccCHHHHHHHHhhhcc--ccc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLS--PDYRMFEGRVAASQL-HMLVREHIDNWTIADCWLQLYDR--WSS 454 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~--P~~~~~~~~~~a~~~-lg~l~~~~g~~~~A~~~l~l~~~--~~~ 454 (760)
+..-..|++.+..+...|.-..|+...+..+... |.++ ..+.+ -..+....+..++++.|.+..-. ...
T Consensus 354 ~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~------s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~ 427 (799)
T KOG4162|consen 354 FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI------SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ 427 (799)
T ss_pred hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc------hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh
Confidence 3344556666666667777777777777777776 5554 33333 33344455666666655521000 000
Q ss_pred cC------------------------------CcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 455 VD------------------------------DIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 455 ~~------------------------------d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
.+ ...++..++++++.+|.|+.+.|.++.-|..+++.+.|+...+++++.
T Consensus 428 ~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 428 RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL 507 (799)
T ss_pred hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 00 012455667777777777777777777777777777777777777777
Q ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh---
Q 004336 505 -AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--- 579 (760)
Q Consensus 505 -~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--- 579 (760)
..+++.+|..++.++-..+++.+|+...+.++.-.|+| ........+-. ..+..++++......
T Consensus 508 ~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~-----------~~~~~e~~l~t~~~~L~~ 576 (799)
T KOG4162|consen 508 NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL-----------TFNDREEALDTCIHKLAL 576 (799)
T ss_pred cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh-----------hcccHHHHHHHHHHHHHH
Confidence 34556777777777777777777777777777766665 11111111111 113333333332222
Q ss_pred cc----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------------cch-------HHHHHH
Q 004336 580 LR----------KGQALNNLGSVYVDCGQLDLAADCYSNALKI---------------------RHT-------RAHQGL 621 (760)
Q Consensus 580 l~----------~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~---------------------~~~-------~a~~~L 621 (760)
|+ .......-+......++..+|...++.+..+ +|. ..|...
T Consensus 577 we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwlla 656 (799)
T KOG4162|consen 577 WEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLA 656 (799)
T ss_pred HHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHH
Confidence 11 1112222222333344556666666555431 111 466788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 697 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~----~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~e 697 (760)
+.++...++.++|.-++.++-.++|..++.|..++. .|++.+|.+.|..|+.++|+++.....+|.++.+.|+..-
T Consensus 657 a~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~l 736 (799)
T KOG4162|consen 657 ADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRL 736 (799)
T ss_pred HHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcch
Confidence 899999999999999999999999988888877643 3789999999999999999999999999999999998777
Q ss_pred HHH--HHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 004336 698 AIA--ELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQE 747 (760)
Q Consensus 698 Ai~--~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~ 747 (760)
|.. .+..++..+|.++.+|+. |.+..+.|+.++|.++|..++++++.+|.
T Consensus 737 a~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 737 AEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 777 999999999999999965 99999999999999999999999988874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-13 Score=165.20 Aligned_cols=253 Identities=11% Similarity=-0.018 Sum_probs=121.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc--CChHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK--RSFEAFFLKAY 550 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~-p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~--p~~~a~~~la~ 550 (760)
+...|..+...|.+.|++++|++.|++..+.. ..+...+..+..++...|++++|.+.+..+++.. |+...+..+..
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 44455555555555555555555555544332 1123344455555555555555555555555432 11144444555
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcch-HHHHHHHHHHH
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALK--IRHT-RAHQGLARVHF 626 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~--~~~~-~a~~~La~~~~ 626 (760)
.|... |.+++|.+.|.+..++ ...|+.+...|.+.|+.++|++.|++..+ ..|+ .++..+...+.
T Consensus 369 ~y~k~-----------G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 369 LYSKW-----------GRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred HHHHC-----------CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 55554 5555555555554333 44555555555555555555555555544 2233 44444555555
Q ss_pred HcCCHHHHHHHHHHHHHhcc--Cc----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004336 627 LKNNKTTAYEEMTKLIKKAR--NN----ASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700 (760)
Q Consensus 627 ~~g~~~~A~~~l~~al~~~~--~~----~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~ 700 (760)
..|+.++|.+.|+...+..+ +. ..+...+...|+.++|.+.+++.. ..| +...|..+...+...|+++.|..
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHH
Confidence 55555555555555544321 11 112222334455555555544321 112 23345555555555555555555
Q ss_pred HHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 004336 701 ELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAAL 739 (760)
Q Consensus 701 ~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL 739 (760)
.+++.+...|++...+ +...+|...|++++|.+.++...
T Consensus 516 ~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5555555555443222 33445555555555555555544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-15 Score=161.46 Aligned_cols=225 Identities=16% Similarity=0.101 Sum_probs=159.8
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
+..|+.+++.|+..+|.-.|+.+++.+|.+. ++|..||.+....++-..|+..+ ++
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~ha------eAW~~LG~~qaENE~E~~ai~AL------------------~r 344 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHA------EAWQKLGITQAENENEQNAISAL------------------RR 344 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHH------HHHHHhhhHhhhccchHHHHHHH------------------HH
Confidence 3457777888899999999999999999984 89999999998888888888888 89
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-------HHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY-------EGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~-------Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
+++++|++-.++..||..|...|.-.+|..++.+-+...|........ ...-......+..-.+.|-.+....
T Consensus 345 cl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~ 424 (579)
T KOG1125|consen 345 CLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL 424 (579)
T ss_pred HHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998888988888877655432110000 0000000011122223333333333
Q ss_pred CC--h-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 540 RS--F-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 540 p~--~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
|. + +.+..||.+|... +.+++|+++|+.+++. ...|+.||-.+....+.++|+..|++|+++
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls-----------~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 425 PTKIDPDVQSGLGVLYNLS-----------GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred CCCCChhHHhhhHHHHhcc-----------hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 31 1 4444444444444 4444444444444221 788999999999999999999999999998
Q ss_pred cch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 613 RHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 613 ~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
.|. +++++||..+..+|.|++|.++|-.+|.+.+
T Consensus 494 qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 494 QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 888 8999999999999999999999998887766
|
|
| >smart00225 BTB Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-16 Score=134.17 Aligned_cols=90 Identities=28% Similarity=0.469 Sum_probs=86.4
Q ss_pred eEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHHHHHHH
Q 004336 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFA 262 (760)
Q Consensus 183 dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~ll~~a 262 (760)
||++.+||++|+|||.+|++.|+||+.||.+++.|+....|.++ ++++.+|+.+++|+|||++. ++.+++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~--~~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLD--DVSPEDFRALLEFLYTGKLD-LPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEec--CCCHHHHHHHHHeecCceee-cCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999888899997 79999999999999999997 9999999999999
Q ss_pred hhhChHhHHHHHH
Q 004336 263 NKFCCERLKDACD 275 (760)
Q Consensus 263 ~~~~~~~~~~~c~ 275 (760)
+.|+++.|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999984
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-14 Score=147.12 Aligned_cols=270 Identities=14% Similarity=0.099 Sum_probs=216.2
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
.....+..+|.+++..|++++|+..|+++..++|.+. .+.-..|.++.+.|+++.-..+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i------~~MD~Ya~LL~~eg~~e~~~~L~-------------- 289 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV------EAMDLYAVLLGQEGGCEQDSALM-------------- 289 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh------hhHHHHHHHHHhccCHhhHHHHH--------------
Confidence 3344566778888888899999999999999999994 88889999999999999988888
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
...+..+.....-|+--+..++..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.++.+.|
T Consensus 290 ----~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 290 ----DYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred ----HHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 7788888788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHH-HHH-HHcCCHHHHHHHHHHHHhhc
Q 004336 541 SF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLG-SVY-VDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 541 ~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg-~~y-~~~g~~~eA~~~~~~Al~~~ 613 (760)
.. +.|..+-.+|... +.+.+|.-......+. +.++..+| .+. ..-.--++|...++++++++
T Consensus 366 ~rL~~Y~GL~hsYLA~-----------~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQ-----------KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred hhHHHHHHHHHHHHhh-----------chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 88 8888888888777 7777777666555222 56666665 333 33344578888888888887
Q ss_pred ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004336 614 HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 691 (760)
Q Consensus 614 ~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~ 691 (760)
|. .+-..+|.++...|.+..++..+++.+...++. ..+..||.++..
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-------------------------------~LH~~Lgd~~~A 483 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-------------------------------NLHNHLGDIMRA 483 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-------------------------------HHHHHHHHHHHH
Confidence 77 677778888888888877777777777666622 345556667777
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHH
Q 004336 692 SHKENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 692 ~g~~~eAi~~l~kal~~~p~~~~~~ 716 (760)
.+.+.+|.++|..|+.++|++....
T Consensus 484 ~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 484 QNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred hhhHHHHHHHHHHHHhcCccchHHH
Confidence 7777777777777777777665444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-12 Score=156.77 Aligned_cols=318 Identities=12% Similarity=0.005 Sum_probs=262.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh
Q 004336 391 CVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 470 (760)
Q Consensus 391 ~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~ 470 (760)
..+...|..++|..+|+.... |+. ..+..+-..+...|+++.|..++ .++...
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~--pd~-------~Tyn~LL~a~~k~g~~e~A~~lf------------------~~M~~~ 466 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRN--PTL-------STFNMLMSVCASSQDIDGALRVL------------------RLVQEA 466 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCC--CCH-------HHHHHHHHHHHhCcCHHHHHHHH------------------HHHHHc
Confidence 345667899999998877653 443 67777778888999999999999 777765
Q ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--cCChHHHH
Q 004336 471 D-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQM--KRSFEAFF 546 (760)
Q Consensus 471 ~-p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p-~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l--~p~~~a~~ 546 (760)
. ..+...|..+-..|.+.|+.++|.+.|+++.+... .+...|..+...|.+.|++++|+..|++.... .|+...|.
T Consensus 467 Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn 546 (1060)
T PLN03218 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5 34678888999999999999999999999988653 36789999999999999999999999998764 57668889
Q ss_pred HHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc------H-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ch-H
Q 004336 547 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR------K-GQALNNLGSVYVDCGQLDLAADCYSNALKIR--HT-R 616 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~------~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~--~~-~ 616 (760)
.+...+... +.+++|.+.+.+... + ...|+.+...|.+.|++++|.+.|+.+.+.+ |. .
T Consensus 547 sLI~a~~k~-----------G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 547 ALISACGQS-----------GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred HHHHHHHHC-----------CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 999999888 899999999887732 2 6788999999999999999999999998854 33 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CcHHHHHH----HHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHH
Q 004336 617 AHQGLARVHFLKNNKTTAYEEMTKLIKKAR-NNASAYEK----RSEYCDRELTRADLEMVTQLD-PLRVYPYRYRAAVLM 690 (760)
Q Consensus 617 a~~~La~~~~~~g~~~~A~~~l~~al~~~~-~~~~~~~~----~~~~~~~~~A~~~l~kal~l~-p~~~~~~~~La~~~~ 690 (760)
.+..+...|.+.|++++|...|.++.+..- .+...|.. ....|+.++|...++++.+.. +.+...|..+...|.
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 889999999999999999999999987632 23333433 345689999999999998865 446788999999999
Q ss_pred HcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcH
Q 004336 691 DSHKENEAIAELSRAIA--FKADLHLLHLRAAFHEHTGDVLGALRDCRAALS--VDPNDQ 746 (760)
Q Consensus 691 ~~g~~~eAi~~l~kal~--~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~--l~P~~~ 746 (760)
+.|++++|.+.|++... ..|+...+......|.+.|++++|.+.|++... +.|+..
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999998865 467666665667778888999999999998875 456643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-13 Score=144.49 Aligned_cols=259 Identities=13% Similarity=-0.011 Sum_probs=184.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHc--cCHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 392 VRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHI--DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 392 ~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~--g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
.++.+|+++.|++.+.-.-+.+.... ..+..+|..++..+ .++..|..+. ..++.
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~-----saaa~nl~~l~flqggk~~~~aqqya------------------d~aln 484 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTA-----SAAANNLCALRFLQGGKDFADAQQYA------------------DIALN 484 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhh-----HHHhhhhHHHHHHhcccchhHHHHHH------------------HHHhc
Confidence 44455577776666654433332221 13333344444332 2344555555 55666
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
.+..++.+..+.|++-+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+..|-+.-.+-.++
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn------- 557 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN------- 557 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh-------
Confidence 6666666666666666666666666666666666666666666666666666666666666665544333333
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 627 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~ 627 (760)
++++..++.+|....+..+|+++|.++...-|+ .++..||.+|-+
T Consensus 558 ---------------------------------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 558 ---------------------------------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred ---------------------------------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 889999999999999999999999999885444 889999999999
Q ss_pred cCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 628 KNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 703 (760)
Q Consensus 628 ~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~ 703 (760)
.|+..+|.+++-......|-+...-+-++ ...-.++|+.+|+++.-+.|+........+.++.+.|+|.+|.+.|+
T Consensus 605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999999999888888885443332222 22346899999999999999999988999999999999999999999
Q ss_pred HHHHcCCCcH
Q 004336 704 RAIAFKADLH 713 (760)
Q Consensus 704 kal~~~p~~~ 713 (760)
......|.+.
T Consensus 685 ~~hrkfpedl 694 (840)
T KOG2003|consen 685 DIHRKFPEDL 694 (840)
T ss_pred HHHHhCccch
Confidence 9999999876
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-14 Score=157.62 Aligned_cols=250 Identities=15% Similarity=0.116 Sum_probs=199.6
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhh--------CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTL--------SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 450 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l--------~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~ 450 (760)
.+........++..|..+|+|+.|+..++.++.. .|.- ......+|.+|..++++.+|+.+|
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~v------a~~l~~~a~~y~~~~k~~eAv~ly---- 264 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVV------ASMLNILALVYRSLGKYDEAVNLY---- 264 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHH------HHHHHHHHHHHHHhccHHHHHHHH----
Confidence 4556666777999999999999999999999988 2322 144456999999999999999999
Q ss_pred cccccCCcCcHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHH
Q 004336 451 RWSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--------ASDHERLVY 514 (760)
Q Consensus 451 ~~~~~~d~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~--------p~~~~a~~~ 514 (760)
++++.. +|.-+.++.+||.+|...|++++|..++++|+++. |.-+..+.+
T Consensus 265 --------------~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 265 --------------EEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred --------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 555553 36667889999999999999999999999999863 334566888
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHH
Q 004336 515 EGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV 594 (760)
Q Consensus 515 Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~ 594 (760)
++.++..++++++|..++++++++.-+. .+... ..-+..+.++|.+|.
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~-----~g~~~---------------------------~~~a~~~~nl~~l~~ 378 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDA-----PGEDN---------------------------VNLAKIYANLAELYL 378 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhh-----ccccc---------------------------hHHHHHHHHHHHHHH
Confidence 9999999999999999999998763211 00000 001678999999999
Q ss_pred HcCCHHHHHHHHHHHHhhcch----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHH
Q 004336 595 DCGQLDLAADCYSNALKIRHT----------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELT 664 (760)
Q Consensus 595 ~~g~~~eA~~~~~~Al~~~~~----------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A 664 (760)
.+|+|++|.+.|++|+.+.+. ..+.++|..|.+.+++.+|...|.+++.+.+
T Consensus 379 ~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~------------------ 440 (508)
T KOG1840|consen 379 KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK------------------ 440 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH------------------
Confidence 999999999999999985321 6788999999999999999988886544321
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 665 RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 665 ~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
..-.-.|+....|.+||.+|..+|++++|+++..+++.
T Consensus 441 -----~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 -----LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred -----HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 11223467778899999999999999999999999884
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-13 Score=149.44 Aligned_cols=265 Identities=10% Similarity=0.019 Sum_probs=214.4
Q ss_pred HHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004336 427 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 506 (760)
Q Consensus 427 ~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p 506 (760)
...|.+....|+++.|...+ .++....|+....+...|.++...|++++|..+++++.+..|
T Consensus 88 ~~~glla~~~g~~~~A~~~l------------------~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p 149 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLI------------------AKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG 149 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHH------------------HHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34567777899999999999 888888898888888999999999999999999999999999
Q ss_pred CcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHH
Q 004336 507 SDH-ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQA 585 (760)
Q Consensus 507 ~~~-~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a 585 (760)
++. .+....+.++...|++++|...+++..+..|++ +.+
T Consensus 150 ~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~----------------------------------------~~~ 189 (409)
T TIGR00540 150 NDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRH----------------------------------------KEV 189 (409)
T ss_pred cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------------------------HHH
Confidence 875 566677999999999999999999999999999 788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc---chHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhcc----CcHHHHHHH
Q 004336 586 LNNLGSVYVDCGQLDLAADCYSNALKIR---HTRA---HQGLARVHFLKNNKTTAYEEMTKLIKKAR----NNASAYEKR 655 (760)
Q Consensus 586 ~~~Lg~~y~~~g~~~eA~~~~~~Al~~~---~~~a---~~~La~~~~~~g~~~~A~~~l~~al~~~~----~~~~~~~~~ 655 (760)
+..++.++...|++++|.+.+.+..+.. +... ......-+...+..+++.+.+.++.+..| +...++...
T Consensus 190 l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~ 269 (409)
T TIGR00540 190 LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIAL 269 (409)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHH
Confidence 8999999999999999999999998752 2211 11222222344555556667777777776 355444333
Q ss_pred ----HhcCCHHHHHHHHHHHHhhCCCChHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHH-HHHHHHHHcC
Q 004336 656 ----SEYCDRELTRADLEMVTQLDPLRVYPY--RYRAAVLMDSHKENEAIAELSRAIAFKADLH--LLH-LRAAFHEHTG 726 (760)
Q Consensus 656 ----~~~~~~~~A~~~l~kal~l~p~~~~~~--~~La~~~~~~g~~~eAi~~l~kal~~~p~~~--~~~-l~a~~~~~~g 726 (760)
...|+.++|...++++++..|++.... ..........++.+++++.++++++..|+++ .+. ..|+++.+.|
T Consensus 270 a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 270 AEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG 349 (409)
T ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc
Confidence 456999999999999999999987532 3334444556889999999999999999999 666 3499999999
Q ss_pred CHHHHHHHHH--HHHhcCCCcHHHH
Q 004336 727 DVLGALRDCR--AALSVDPNDQEML 749 (760)
Q Consensus 727 ~~~~A~~~~~--~aL~l~P~~~~~l 749 (760)
++++|.++|+ ++++.+|++....
T Consensus 350 ~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 350 EFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred cHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 9999999999 6888999887644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.7e-13 Score=146.56 Aligned_cols=300 Identities=12% Similarity=-0.017 Sum_probs=200.0
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
+-+.++..+|..+...|+.++|...+.++....|.+.. ..+..+..+.++...|++++|...+
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~~~~~a~~~~~~g~~~~A~~~~-------------- 66 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT---ERERAHVEALSAWIAGDLPKALALL-------------- 66 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHHcCCHHHHHHHH--------------
Confidence 34556667777777777888888888888888776631 1255667788888888888888888
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCP----EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~----~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
++++..+|++..++.. +..+...|++ ..+.+.+.......|.....+..+|.++...|++++|+..+++++
T Consensus 67 ----~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 141 (355)
T cd05804 67 ----EQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRAL 141 (355)
T ss_pred ----HHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888877664 5555444443 344444433334566667777788888888888888888888888
Q ss_pred hhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--
Q 004336 537 QMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-- 614 (760)
Q Consensus 537 ~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~-- 614 (760)
+++|++ ..++..+|.++...|++++|+.++++++...+
T Consensus 142 ~~~p~~----------------------------------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 142 ELNPDD----------------------------------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred hhCCCC----------------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 888888 56777778888888888888888888877543
Q ss_pred h----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH---------HHHHHHHhcCCHHHHHHH--H-HHHHhhCCC-
Q 004336 615 T----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA---------SAYEKRSEYCDRELTRAD--L-EMVTQLDPL- 677 (760)
Q Consensus 615 ~----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~---------~~~~~~~~~~~~~~A~~~--l-~kal~l~p~- 677 (760)
+ ..+..+|.++...|++++|+..|++++...|... .........|....+... + .......|.
T Consensus 182 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~ 261 (355)
T cd05804 182 SMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDH 261 (355)
T ss_pred cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcc
Confidence 1 2455678888888888888888888765544111 111111112211111111 1 111111121
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cH------HHH-HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 678 -RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD---LH------LLH-LRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 678 -~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~---~~------~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
........+.++...|+.++|...++......-. .. .+. +.+..+...|++++|++.+..++.+.
T Consensus 262 ~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 262 GLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2233346788889999999999999887654322 11 111 55888899999999999999998754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=145.99 Aligned_cols=237 Identities=13% Similarity=0.065 Sum_probs=135.1
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHcc-CHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 394 LLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 394 l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g-~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
...+++++|+..+.+++.++|++. .+++..+.++...| .+++++.++ .+++..+|
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~y------taW~~R~~iL~~L~~~l~eeL~~~------------------~~~i~~np 103 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNY------TVWHFRRLCLEALDADLEEELDFA------------------EDVAEDNP 103 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhH------HHHHHHHHHHHHcchhHHHHHHHH------------------HHHHHHCC
Confidence 334455566666666666665553 55555555555554 345555555 55555555
Q ss_pred CcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCP--EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~--~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
++..+|+..+.++...|+. ++++.+++++++.+|++..+|...|+++...|++++|++.+.++|+.+|.+
T Consensus 104 knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-------- 175 (320)
T PLN02789 104 KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-------- 175 (320)
T ss_pred cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc--------
Confidence 5555555555555555542 445555555555555555555555555555555555555555555555555
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 630 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~ 630 (760)
..+|+..|.+ ....|+
T Consensus 176 --------------------------------~sAW~~R~~v--------------------------------l~~~~~ 191 (320)
T PLN02789 176 --------------------------------NSAWNQRYFV--------------------------------ITRSPL 191 (320)
T ss_pred --------------------------------hhHHHHHHHH--------------------------------HHhccc
Confidence 4444444444 333211
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 004336 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD----SHKENEAIAELSRAI 706 (760)
Q Consensus 631 ~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~----~g~~~eAi~~l~kal 706 (760)
... ++ ...++++....+++..+|++..+|.+++.++.. .++..+|++.+.+++
T Consensus 192 l~~----~~-------------------~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 192 LGG----LE-------------------AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred ccc----cc-------------------ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 000 00 012455666778888888888999988888887 455677888888888
Q ss_pred HcCCCcHHHH-HHHHHHHHcC------------------CHHHHHHHHHHHHhcCCCcHHHH
Q 004336 707 AFKADLHLLH-LRAAFHEHTG------------------DVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 707 ~~~p~~~~~~-l~a~~~~~~g------------------~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
...|....+. +.+.+|.... ..++|.+.|+..-+.||--..-+
T Consensus 249 ~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 249 SKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred cccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHH
Confidence 8887776444 5555555421 23567777776655555433333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-12 Score=132.88 Aligned_cols=269 Identities=16% Similarity=0.062 Sum_probs=206.6
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
|-.|.-++...+.++|+..|-.+++.+|.. .++...||.++...|..+.|+.+. +
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t------~e~~ltLGnLfRsRGEvDRAIRiH-------------------Q 93 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPET------FEAHLTLGNLFRSRGEVDRAIRIH-------------------Q 93 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchh------hHHHHHHHHHHHhcchHHHHHHHH-------------------H
Confidence 455777888889999999999999999998 499999999999999999999876 4
Q ss_pred HHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 467 MLESDAPK-----GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 467 al~~~p~~-----~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.+-..|+. ..+.+.+|.-|+..|-++.|...|....+...--..++..|-.+|....+|++|+...++..++.+.
T Consensus 94 ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 94 TLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 44444543 4578889999999999999999999988766666789999999999999999999999999998877
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHH
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQ 619 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~ 619 (760)
. ..+ .-++.|..++..+....+.+.|...+.+|++.+|. ++-.
T Consensus 174 ~------------------------~~~-----------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi 218 (389)
T COG2956 174 T------------------------YRV-----------EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI 218 (389)
T ss_pred c------------------------chh-----------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh
Confidence 6 000 01677888899999999999999999999998887 8888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCcH-H----HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 004336 620 GLARVHFLKNNKTTAYEEMTKLIKKARNNA-S----AYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK 694 (760)
Q Consensus 620 ~La~~~~~~g~~~~A~~~l~~al~~~~~~~-~----~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~ 694 (760)
.+|+++...|++..|++.++.+++.+|..- . ++......|+.++....+.++.+..+... +...++..-....-
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~lie~~~G 297 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADLIELQEG 297 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-HHHHHHHHHHHhhC
Confidence 999999999999999999999998888432 1 12222333666666666666666555432 23333444444444
Q ss_pred HHHHHHHHHHHHHcCCCcHHHH
Q 004336 695 ENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 695 ~~eAi~~l~kal~~~p~~~~~~ 716 (760)
.++|..++.+-+..+|+....+
T Consensus 298 ~~~Aq~~l~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 298 IDAAQAYLTRQLRRKPTMRGFH 319 (389)
T ss_pred hHHHHHHHHHHHhhCCcHHHHH
Confidence 5666666666666666655444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-12 Score=156.80 Aligned_cols=322 Identities=13% Similarity=0.028 Sum_probs=157.4
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
|..+...+...|++++|+..|++.+...+... ...+..+-..+...|..+.+..+. .
T Consensus 192 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~-----~~t~~~ll~a~~~~~~~~~~~~l~------------------~ 248 (697)
T PLN03081 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAE-----PRTFVVMLRASAGLGSARAGQQLH------------------C 248 (697)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC-----hhhHHHHHHHHhcCCcHHHHHHHH------------------H
Confidence 33334444444566666666665554432211 133333444444555555555554 3
Q ss_pred HHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hcCCh
Q 004336 466 QMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRSF 542 (760)
Q Consensus 466 ~al~~~-p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~--l~p~~ 542 (760)
.++... ..+..++..+...|.+.|++++|.+.|++. .+.+..+|..+...|...|++++|+..|++..+ ..|+.
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 333222 223444555555556666666666555543 233445555555666666666666666655543 23444
Q ss_pred HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHH
Q 004336 543 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRA 617 (760)
Q Consensus 543 ~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a 617 (760)
..+..+..++... +.+++|.+.+....+. ..+++.+...|.+.|++++|...|++..+. ...+
T Consensus 326 ~t~~~ll~a~~~~-----------g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-d~~t 393 (697)
T PLN03081 326 FTFSIMIRIFSRL-----------ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLIS 393 (697)
T ss_pred HHHHHHHHHHHhc-----------cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-Ceee
Confidence 4555555555555 5555555555544222 345555555566666666666666554331 1145
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CcHHHHH----HHHhcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHH
Q 004336 618 HQGLARVHFLKNNKTTAYEEMTKLIKKAR-NNASAYE----KRSEYCDRELTRADLEMVTQLDPL--RVYPYRYRAAVLM 690 (760)
Q Consensus 618 ~~~La~~~~~~g~~~~A~~~l~~al~~~~-~~~~~~~----~~~~~~~~~~A~~~l~kal~l~p~--~~~~~~~La~~~~ 690 (760)
|..+...|.+.|+.++|++.|++..+... ++...|. .....|..++|...|+...+..+. +...|..+..+|.
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 55555556666666666666665554321 1222222 223345555666655555443221 2234555555566
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 004336 691 DSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 691 ~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
+.|++++|.+.+++. ...|+...+......+...|+.+.|...+++.++++|++.
T Consensus 474 r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 474 REGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred hcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 666666665555443 2333333222222223333556666666666555555543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-13 Score=136.27 Aligned_cols=242 Identities=18% Similarity=0.164 Sum_probs=170.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccC
Q 004336 479 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQ 557 (760)
Q Consensus 479 ~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~ 557 (760)
|-.|.-++-.++.++|+..|...++.+|...+++..||+++...|..+.|+...+..+. .|+. ..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~------------- 104 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFE------------- 104 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchH-------------
Confidence 45677788889999999999999999999999999999999999999999998887664 3554 00
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHH
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~ 635 (760)
++.-+...||.-|+..|-++.|...|......... .++..|..+|....++++|+
T Consensus 105 -----------------------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAI 161 (389)
T COG2956 105 -----------------------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAI 161 (389)
T ss_pred -----------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 11345566666677777777777777666653222 56666667777777777777
Q ss_pred HHHHHHHHhcc-----CcHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 636 EEMTKLIKKAR-----NNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 706 (760)
Q Consensus 636 ~~l~~al~~~~-----~~~~~~~~~~~----~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal 706 (760)
+.-+++.+..+ ..+..|..++. ..+.+.|+..+.+|++.+|+...+-..+|.+....|+|.+|++.++.++
T Consensus 162 d~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 162 DVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 77776666665 23334444332 2456677777777777777777777777777777777777777777777
Q ss_pred HcCCCcHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 707 AFKADLHLL--HLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 707 ~~~p~~~~~--~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
+.+|+.... .....+|.+.|+.++....+.++.+..++....+-++..+..
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~ 294 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIEL 294 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 777765422 234666777777777777777777777766655555554443
|
|
| >KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-15 Score=157.27 Aligned_cols=149 Identities=23% Similarity=0.371 Sum_probs=134.0
Q ss_pred CCCccceeEEEEecC-----eEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCC
Q 004336 176 SGDQVLRNVVFRIHE-----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGV 250 (760)
Q Consensus 176 ~~~~~~~dv~~~~~~-----~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~ 250 (760)
.+++.++||.|+||+ +.|||||.+||..|+-|.+||+|++.|+...+|.++ +|.|.++..++.|+|+..+. +
T Consensus 109 ~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lp--dvepaaFl~~L~flYsdev~-~ 185 (521)
T KOG2075|consen 109 FNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLP--DVEPAAFLAFLRFLYSDEVK-L 185 (521)
T ss_pred ccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecC--CcChhHhHHHHHHHhcchhh-h
Confidence 467778999999984 589999999999999999999999999988899998 89999999999999999997 9
Q ss_pred ChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchhhh
Q 004336 251 TPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEI 327 (760)
Q Consensus 251 ~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~~l 327 (760)
..+||..+|.+|+++-++.|.+.|..||...+.....++.+.+.+...+.+.|...|++.+.-.+-..++.+.+..+
T Consensus 186 ~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~di 262 (521)
T KOG2075|consen 186 AADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDI 262 (521)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeeh
Confidence 99999999999999999999999999999999777777777777999999999999999987777666666655433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-13 Score=152.27 Aligned_cols=246 Identities=16% Similarity=0.065 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEAA 494 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A 494 (760)
..+...++..|...|+++.|+.++ .++++. .|.-......+|.+|..++++.+|
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~------------------k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eA 260 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLC------------------KQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEA 260 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHH------------------HHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHH
Confidence 367777999999999999999999 777776 455566666799999999999999
Q ss_pred HHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhh
Q 004336 495 MRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 566 (760)
Q Consensus 495 i~~l~kal~~--------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~ 566 (760)
+..|++|+.+ +|..+.++.+||.+|...|++++|..++++++++.... ++.....
T Consensus 261 v~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-----~~~~~~~------------ 323 (508)
T KOG1840|consen 261 VNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-----LGASHPE------------ 323 (508)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-----hccChHH------------
Confidence 9999999976 45556789999999999999999999999999763221 0000000
Q ss_pred hHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------cc-h--HHHHHHHHHHHHcCCHHHHHH
Q 004336 567 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-------RH-T--RAHQGLARVHFLKNNKTTAYE 636 (760)
Q Consensus 567 ~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-------~~-~--~a~~~La~~~~~~g~~~~A~~ 636 (760)
-+..+.+++.++...+++++|..+|++++++ ++ . ....+||.+|..+|++++|.+
T Consensus 324 ---------------v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 324 ---------------VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE 388 (508)
T ss_pred ---------------HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence 0678889999999999999999999999984 22 1 678899999999999999999
Q ss_pred HHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc
Q 004336 637 EMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF----KADL 712 (760)
Q Consensus 637 ~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~----~p~~ 712 (760)
++++++.+..... -..++....++..+|..|.+.+++.+|...|..+..+ .|+.
T Consensus 389 ~~k~ai~~~~~~~----------------------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 389 LYKKAIQILRELL----------------------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHHhcc----------------------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 9999887764111 0112333456788899999999999999999988754 4555
Q ss_pred HHH---HHH-HHHHHHcCCHHHHHHHHHHHHh
Q 004336 713 HLL---HLR-AAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 713 ~~~---~l~-a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
+.. +.+ +.+|..+|+++.|+++.++++.
T Consensus 447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 433 233 9999999999999999999883
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-12 Score=139.41 Aligned_cols=324 Identities=19% Similarity=0.123 Sum_probs=203.6
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
+|...+...+++|+..|+++ +.+.+.|..+...|+-++|..+. ..++..++.....
T Consensus 22 QYkkgLK~~~~iL~k~~eHg------eslAmkGL~L~~lg~~~ea~~~v------------------r~glr~d~~S~vC 77 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHG------ESLAMKGLTLNCLGKKEEAYELV------------------RLGLRNDLKSHVC 77 (700)
T ss_pred HHHhHHHHHHHHHHhCCccc------hhHHhccchhhcccchHHHHHHH------------------HHHhccCcccchh
Confidence 77777777777777777775 77777777777777777777777 7777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHccc
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSS 556 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~ 556 (760)
|..+|.++...++|++|+++|+.|+.+.|+|...+.-++.+..++|+++-....-.+.++..|.. ..|+..+......+
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777 55555554443331
Q ss_pred CCC----------------Cc---------------chhhhhHHHHHHhhhHhh----ccHHHHHHHHHHHHHHcCCHHH
Q 004336 557 QDS----------------SC---------------SSTVVSLLEDALKCPSDR----LRKGQALNNLGSVYVDCGQLDL 601 (760)
Q Consensus 557 ~~~----------------~~---------------~~~~~~~leeAl~~~~~~----l~~~~a~~~Lg~~y~~~g~~~e 601 (760)
... .+ .-...+.+++|++..... .++.......|.++.+.+++++
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHh
Confidence 000 00 000111222222222222 1112333445677777788888
Q ss_pred HHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHH-HHHHHHHHhccC----------------cHHHHHH--------
Q 004336 602 AADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAY-EEMTKLIKKARN----------------NASAYEK-------- 654 (760)
Q Consensus 602 A~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~-~~l~~al~~~~~----------------~~~~~~~-------- 654 (760)
|...|...+..+|+ ..+.++-.++..-.+.-++. ..|...-+..|. ....+..
T Consensus 238 A~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 238 AVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 88888777777776 33334444443222223333 444443333330 0000000
Q ss_pred ---------HHhcCCHHHHHHHHHHHH-h----hC--------------CCCh--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 655 ---------RSEYCDRELTRADLEMVT-Q----LD--------------PLRV--YPYRYRAAVLMDSHKENEAIAELSR 704 (760)
Q Consensus 655 ---------~~~~~~~~~A~~~l~kal-~----l~--------------p~~~--~~~~~La~~~~~~g~~~eAi~~l~k 704 (760)
.+.+.+..+. ..+++.+ . ++ |-.+ ..++.++..+...|+++.|..+++.
T Consensus 318 g~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred CCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0111221211 1222221 1 11 2222 3456788999999999999999999
Q ss_pred HHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 004336 705 AIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 705 al~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
|+...|.....+ +.|.++.++|++++|...++.+.++|-.|-
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 999999988877 559999999999999999999999885543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-12 Score=158.56 Aligned_cols=272 Identities=15% Similarity=0.073 Sum_probs=196.0
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-cCCh
Q 004336 465 YQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM-KRSF 542 (760)
Q Consensus 465 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l-~p~~ 542 (760)
..+.... ..+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|+.++|+..|++.... .|+.
T Consensus 413 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~ 489 (857)
T PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNS 489 (857)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCH
Confidence 5555443 33566777888899999999999999987643 35567888889999999999999999998754 4555
Q ss_pred HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHH
Q 004336 543 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRA 617 (760)
Q Consensus 543 ~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a 617 (760)
..+..+-.++... +.++.+.+.+....+. ...++.+-..|.+.|++++|...|+.. .....+
T Consensus 490 ~t~~~lL~a~~~~-----------g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s 556 (857)
T PLN03077 490 VTLIAALSACARI-----------GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVS 556 (857)
T ss_pred hHHHHHHHHHhhh-----------chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhh
Confidence 6666666666665 7777777766655332 456667788888899999998888876 222378
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc--cCcH---HHHHHHHhcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHH
Q 004336 618 HQGLARVHFLKNNKTTAYEEMTKLIKKA--RNNA---SAYEKRSEYCDRELTRADLEMVTQLDPL--RVYPYRYRAAVLM 690 (760)
Q Consensus 618 ~~~La~~~~~~g~~~~A~~~l~~al~~~--~~~~---~~~~~~~~~~~~~~A~~~l~kal~l~p~--~~~~~~~La~~~~ 690 (760)
|..+...|...|+.++|++.|++..+.. |+.. .+.......|..++|...|+...+..+. +...|..+..++.
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 8888888889999999999998887643 3322 2233344568888888888888744322 3467888888899
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 691 DSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 691 ~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
+.|++++|.+.+++. ...|+...+. +...+ ...|+.+.|....+++++++|++.....++..
T Consensus 637 r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac-~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n 699 (857)
T PLN03077 637 RAGKLTEAYNFINKM-PITPDPAVWGALLNAC-RIHRHVELGELAAQHIFELDPNSVGYYILLCN 699 (857)
T ss_pred hCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Confidence 999999998888875 4567655444 33333 44488888888888888888888766555443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-12 Score=142.43 Aligned_cols=310 Identities=14% Similarity=0.052 Sum_probs=238.5
Q ss_pred HHHHHHHHhhhHHHhc-----------CCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhh
Q 004336 381 QRLLAFHQLGCVRLLR-----------KEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 449 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~-----------g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~ 449 (760)
-.+..++.+|..|-.+ ....++++.++++++.+|+++ .+.+.++.-|..+++.+.|..+.
T Consensus 431 l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp------~~if~lalq~A~~R~l~sAl~~~--- 501 (799)
T KOG4162|consen 431 LKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP------LVIFYLALQYAEQRQLTSALDYA--- 501 (799)
T ss_pred hhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHHHHhHHHHHHHH---
Confidence 3455666666655322 245789999999999999997 99999999999999999999999
Q ss_pred ccccccCCcCcHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Q 004336 450 DRWSSVDDIGSLSVIYQMLES-DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 528 (760)
Q Consensus 450 ~~~~~~~d~~sl~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeA 528 (760)
+++++. ..+++.+|..++.++-..+++.+|+.....++.-.|+|.........+-...|+.++|
T Consensus 502 ---------------~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~ 566 (799)
T KOG4162|consen 502 ---------------REALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEA 566 (799)
T ss_pred ---------------HHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHH
Confidence 999999 4577899999999999999999999999999999999887777777777789999999
Q ss_pred HHHHHHHHhhcCCh-HHHHHHHHH--HHc---ccCCCCcchhhhhHHHHHHhhhHhh---------cc-------H----
Q 004336 529 LRKAEESIQMKRSF-EAFFLKAYA--LAD---SSQDSSCSSTVVSLLEDALKCPSDR---------LR-------K---- 582 (760)
Q Consensus 529 l~~~~~al~l~p~~-~a~~~la~~--l~~---~~~~~~~~~~~~~~leeAl~~~~~~---------l~-------~---- 582 (760)
+......+.+-... .+...++.. ... .....++....+.....+....... +. +
T Consensus 567 l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 567 LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchH
Confidence 99998888764322 222222111 100 0011111111111111111111100 00 0
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH-
Q 004336 583 ---GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS- 656 (760)
Q Consensus 583 ---~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~- 656 (760)
...|...+..+...++.++|.-++.++-++.|. ..++..|.++..+|+..+|...|..++..+|+.......++
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 457778899999999999999999999998887 88999999999999999999999999999997655544433
Q ss_pred ---hcCCHHHHHH--HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 004336 657 ---EYCDRELTRA--DLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL 714 (760)
Q Consensus 657 ---~~~~~~~A~~--~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~ 714 (760)
..|+..-|.. .+..++++||.++.+|+++|.++..+|+.++|.+.|..++++.+.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 3466555555 999999999999999999999999999999999999999999887763
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-13 Score=154.36 Aligned_cols=363 Identities=14% Similarity=0.075 Sum_probs=242.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhh
Q 004336 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL 448 (760)
Q Consensus 369 le~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l 448 (760)
+..++....-....|.++..+|.+|..--+...|..+|++|..+||.+. .+.-..+..|....+|+.|....-.
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda------eaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA------EAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh------hhHHHHHHHhhccccHHHHHHHHHH
Confidence 4455556666777899999999999998899999999999999999995 8888889999999999988765411
Q ss_pred hc----------cc--------cccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 004336 449 YD----------RW--------SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 510 (760)
Q Consensus 449 ~~----------~~--------~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~ 510 (760)
.. .| .+....+++..++.+++.+|.+...|..+|.+|.+.|++..|++.|.++..++|.+..
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 00 00 1111223555677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCC---CcchhhhhHHHHHHhhhHhhccH----
Q 004336 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDS---SCSSTVVSLLEDALKCPSDRLRK---- 582 (760)
Q Consensus 511 a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~---~~~~~~~~~leeAl~~~~~~l~~---- 582 (760)
+.+..+.+....|+|.+|+..+...+...... .....++.++.....+. +-.......++++++.+.-.+..
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 77777777777777777777777777665555 55556665555431111 11112233334444333222111
Q ss_pred -HHHHHHHHHH-------------------HHH----cCCH------HHHHHHHHHHHhh-cchHHHHHHHHHHHH----
Q 004336 583 -GQALNNLGSV-------------------YVD----CGQL------DLAADCYSNALKI-RHTRAHQGLARVHFL---- 627 (760)
Q Consensus 583 -~~a~~~Lg~~-------------------y~~----~g~~------~eA~~~~~~Al~~-~~~~a~~~La~~~~~---- 627 (760)
...|..+|.. +.. .+.. --|.+++-..++. .+...|+++|..|++
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 1111111111 111 1111 1244444444442 233677888877776
Q ss_pred ----cCCHHHHHHHHHHHHHhccCcHHHHHHHH---hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004336 628 ----KNNKTTAYEEMTKLIKKARNNASAYEKRS---EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700 (760)
Q Consensus 628 ----~g~~~~A~~~l~~al~~~~~~~~~~~~~~---~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~ 700 (760)
+.+...|+..+.++++...++...++.++ .-|.+.-|...|-+.+...|.....|.++|.++.+..+++.|..
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhH
Confidence 22334688888888888887777776664 33567777788888888888888888888888888888888888
Q ss_pred HHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHH
Q 004336 701 ELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRA 737 (760)
Q Consensus 701 ~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~ 737 (760)
.+.++..+.|.+-..|++ +.+....|+.-++...+.-
T Consensus 872 af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 872 AFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 888888888888877777 7777777877777777766
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-12 Score=143.85 Aligned_cols=258 Identities=14% Similarity=0.084 Sum_probs=196.6
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
+...+.....+|+++.|..+|+++.+.+|++. .......+.++...|++++|...+ +
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~-----~~~~l~~a~l~l~~g~~~~Al~~l------------------~ 177 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQ-----LPVEITRVRIQLARNENHAARHGV------------------D 177 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHHCCCHHHHHHHH------------------H
Confidence 34445566888999999999999999999984 233334589999999999999999 9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHH-------HHCCCHHHHHHHHHHHHh
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY-EGWIL-------YDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~-Lg~i~-------~~~g~~eeAl~~~~~al~ 537 (760)
+..+.+|+++.++..++.+|.+.|++++|++.+.+..+..+.++..... .+..+ ....+.+...+.+++..+
T Consensus 178 ~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~ 257 (398)
T PRK10747 178 KLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR 257 (398)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999887665443221 11111 111111222222222111
Q ss_pred hcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-H
Q 004336 538 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-R 616 (760)
Q Consensus 538 l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~ 616 (760)
..|++ +.+...++..+...|+.++|...++++++..+. .
T Consensus 258 ~~~~~----------------------------------------~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~ 297 (398)
T PRK10747 258 KTRHQ----------------------------------------VALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER 297 (398)
T ss_pred HHhCC----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 12222 778888999999999999999999999985443 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 004336 617 AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDS 692 (760)
Q Consensus 617 a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~ 692 (760)
.....+. ...++.+++++.+++.++..|+++..+...+ ..+++++|...|+++++.+|++.. +..++.++.+.
T Consensus 298 l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~ 374 (398)
T PRK10747 298 LVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRL 374 (398)
T ss_pred HHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHc
Confidence 2222333 3459999999999999999998887665543 458899999999999999998644 66899999999
Q ss_pred CCHHHHHHHHHHHHHcC
Q 004336 693 HKENEAIAELSRAIAFK 709 (760)
Q Consensus 693 g~~~eAi~~l~kal~~~ 709 (760)
|+.++|..+|++++.+.
T Consensus 375 g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 375 HKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 99999999999998754
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=8e-13 Score=140.86 Aligned_cols=140 Identities=10% Similarity=0.054 Sum_probs=122.9
Q ss_pred cccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcC-CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHH
Q 004336 356 MNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRK-EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVRE 434 (760)
Q Consensus 356 ~~~~~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g-~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~ 434 (760)
+.....++.++.+.+..++. .+....+|+..|.++...| ++++|+..++++++.+|++. .+|+..+.+..
T Consensus 47 l~~~e~serAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny------qaW~~R~~~l~ 117 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY------QIWHHRRWLAE 117 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch------HHhHHHHHHHH
Confidence 44555677777777766555 5667899999999999998 68999999999999999995 89999999998
Q ss_pred HccCH--HHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 004336 435 HIDNW--TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 512 (760)
Q Consensus 435 ~~g~~--~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~ 512 (760)
..|+. ++++.++ .++++.+|.+..+|..++.++...|++++|++++.++++.+|.+..+|
T Consensus 118 ~l~~~~~~~el~~~------------------~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW 179 (320)
T PLN02789 118 KLGPDAANKELEFT------------------RKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW 179 (320)
T ss_pred HcCchhhHHHHHHH------------------HHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence 88874 5667777 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHC
Q 004336 513 VYEGWILYDT 522 (760)
Q Consensus 513 ~~Lg~i~~~~ 522 (760)
...|.++...
T Consensus 180 ~~R~~vl~~~ 189 (320)
T PLN02789 180 NQRYFVITRS 189 (320)
T ss_pred HHHHHHHHhc
Confidence 9999886654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-12 Score=154.71 Aligned_cols=123 Identities=11% Similarity=-0.025 Sum_probs=59.9
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhh--CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTL--SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l--~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
|..+-..|.+.|++++|+..|++.... .|+. ..+..+-..+...|+.+.|.+++
T Consensus 256 ~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~-------~ty~~ll~a~~~~g~~~~a~~l~----------------- 311 (857)
T PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDL-------MTITSVISACELLGDERLGREMH----------------- 311 (857)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHH-----------------
Confidence 333334455555666666666666543 3433 33444444445555555555555
Q ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 464 IYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 464 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
..+.... +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..
T Consensus 312 -~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 312 -GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred -HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3333221 2234445555555555555555555555432 1233445555555555555555555555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7e-13 Score=133.78 Aligned_cols=270 Identities=15% Similarity=0.060 Sum_probs=213.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCc---ch-hchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 392 VRLLRKEYDEAEHLFEAILTLSPDYR---MF-EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 392 ~~l~~g~~~eA~~~~~~aL~l~P~~~---~~-~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
+++..+|...|-......++.+-.-+ .. .....-...+|.+|.+.|.+.+|...+ +..
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekql------------------qss 249 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQL------------------QSS 249 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHH------------------HHH
Confidence 34555577777776666665542111 00 000112245889999999999998888 777
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHH
Q 004336 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 547 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~ 547 (760)
+...| .++.+..++.+|.+..++..|+..|.+.++..|.+...+...+.++..++++++|+++|+.+++.+|.+
T Consensus 250 L~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n----- 323 (478)
T KOG1129|consen 250 LTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN----- 323 (478)
T ss_pred hhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc-----
Confidence 77654 567888899999999999999999999999999998888999999999999999999999999998888
Q ss_pred HHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cchHHHHHHHHHH
Q 004336 548 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVH 625 (760)
Q Consensus 548 la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~--~~~~a~~~La~~~ 625 (760)
.++.--+|.-|+..++++-|+.+|++.+.. ..++.+.++|.+.
T Consensus 324 -----------------------------------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC 368 (478)
T KOG1129|consen 324 -----------------------------------VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCC 368 (478)
T ss_pred -----------------------------------ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence 455555677788889999999999999985 4458889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 626 FLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRA 705 (760)
Q Consensus 626 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~ka 705 (760)
...++++-++..+++++....+. ..-...|+++|.+....|++.-|...|+-+
T Consensus 369 ~yaqQ~D~~L~sf~RAlstat~~---------------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 369 LYAQQIDLVLPSFQRALSTATQP---------------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HhhcchhhhHHHHHHHHhhccCc---------------------------chhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 99888877777777666544311 123478999999999999999999999999
Q ss_pred HHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 004336 706 IAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQE 747 (760)
Q Consensus 706 l~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~ 747 (760)
+..+|++...... +.+-.+.|+.++|..++..+-...|+-.+
T Consensus 422 L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 422 LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 9999999877744 77778889999999999999999997654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-12 Score=132.81 Aligned_cols=179 Identities=11% Similarity=-0.014 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG---VLYFRQSLLLLRLNCPEAAMRSLQ 499 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~Ai~~l~ 499 (760)
...++.+|..+...|+++.|+..+ ++++..+|+++ .+++.+|.++...|++++|+..|+
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~ 94 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYF------------------EALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAAD 94 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 588999999999999999999999 99999999875 688999999999999999999999
Q ss_pred HHHHhCCCcHH---HHHHHHHHHHHC--------CCHHHHHHHHHHHHhhcCCh-HHHHHH---HHHHHcccCCCCcchh
Q 004336 500 LARQHAASDHE---RLVYEGWILYDT--------SHCEEGLRKAEESIQMKRSF-EAFFLK---AYALADSSQDSSCSST 564 (760)
Q Consensus 500 kal~~~p~~~~---a~~~Lg~i~~~~--------g~~eeAl~~~~~al~l~p~~-~a~~~l---a~~l~~~~~~~~~~~~ 564 (760)
++++..|+++. +++.+|.++... |++++|+..+++++..+|++ .++..+ +......
T Consensus 95 ~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~--------- 165 (235)
T TIGR03302 95 RFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRL--------- 165 (235)
T ss_pred HHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHH---------
Confidence 99999998775 789999999886 89999999999999999998 332222 2211111
Q ss_pred hhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 565 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMT 639 (760)
Q Consensus 565 ~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~g~~~~A~~~l~ 639 (760)
......+|..|...|++.+|+..|+++++..|. .+++.+|.++...|++++|..+++
T Consensus 166 ------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 166 ------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred ------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344567899999999999999999999986442 799999999999999999999988
Q ss_pred HHHHhcc
Q 004336 640 KLIKKAR 646 (760)
Q Consensus 640 ~al~~~~ 646 (760)
.+....|
T Consensus 228 ~l~~~~~ 234 (235)
T TIGR03302 228 VLGANYP 234 (235)
T ss_pred HHHhhCC
Confidence 8776654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7e-11 Score=129.48 Aligned_cols=334 Identities=13% Similarity=0.023 Sum_probs=233.6
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+..+...|..+...|+-++|....+.++..++... -+|+.+|+++....+|++|+.++
T Consensus 37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~------vCwHv~gl~~R~dK~Y~eaiKcy------------ 98 (700)
T KOG1156|consen 37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH------VCWHVLGLLQRSDKKYDEAIKCY------------ 98 (700)
T ss_pred CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc------hhHHHHHHHHhhhhhHHHHHHHH------------
Confidence 344556666777777788899999999999999999986 89999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
+.++..+|+|..++..++.+..+.++++-....-.+.++..|.....|...+..+.-.|++..|....+...+.
T Consensus 99 ------~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 99 ------RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred ------HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887765
Q ss_pred c---CCh------HHHHHHHHHHHcccCC-----------------------CCcchhhhhHHHHHHhhhHhhccH----
Q 004336 539 K---RSF------EAFFLKAYALADSSQD-----------------------SSCSSTVVSLLEDALKCPSDRLRK---- 582 (760)
Q Consensus 539 ~---p~~------~a~~~la~~l~~~~~~-----------------------~~~~~~~~~~leeAl~~~~~~l~~---- 582 (760)
. |+. +.......++...+.. ........+++++|...|...+.+
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 4 443 1222222222222110 011122457788888888877544
Q ss_pred HHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhcch---------H-------------------------HHHHHHHHHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAA-DCYSNALKIRHT---------R-------------------------AHQGLARVHFL 627 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~-~~~~~Al~~~~~---------~-------------------------a~~~La~~~~~ 627 (760)
...+..+-.++..-.+--+++ ..|...-+.-|. . +...+-.+|
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy-- 330 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY-- 330 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH--
Confidence 333333333333222333344 444443321110 0 000011111
Q ss_pred cCCHHHHHHHHHHHHHh-------c------------cCc--HHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHH
Q 004336 628 KNNKTTAYEEMTKLIKK-------A------------RNN--ASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPY 682 (760)
Q Consensus 628 ~g~~~~A~~~l~~al~~-------~------------~~~--~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~ 682 (760)
.++. -...+++.+.. . |+. .|.+..++ ..|+++.|...++.|+...|+..+.|
T Consensus 331 -k~p~-k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 331 -KDPE-KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred -hchh-HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 1111 11133332221 1 112 23222222 34899999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHh
Q 004336 683 RYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 683 ~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
..-|.++...|.+++|...+..+.+++-.+..+.-. +.+..+..+.++|.+...+.-.
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 999999999999999999999999987666555533 7777777889999887766543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-10 Score=116.12 Aligned_cols=304 Identities=15% Similarity=0.025 Sum_probs=218.1
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
..+|.....-|..-+..|+|..|+....+.-+..+.- .-++..-+....+.|+++.|..|+
T Consensus 81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p------~l~~l~aA~AA~qrgd~~~an~yL------------- 141 (400)
T COG3071 81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP------VLAYLLAAEAAQQRGDEDRANRYL------------- 141 (400)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch------HHHHHHHHHHHHhcccHHHHHHHH-------------
Confidence 3456677777888888999999999999865554444 366777778889999999999999
Q ss_pred cHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 460 SLSVIYQMLESDAP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 460 sl~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.++-+..++ .-......+.++...|+++.|.....++++..|.++.++.....+|...|++.+......+.-+.
T Consensus 142 -----~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka 216 (400)
T COG3071 142 -----AEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA 216 (400)
T ss_pred -----HHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence 787777443 45567788999999999999999999999999999999999999999999999999988887664
Q ss_pred cCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcch
Q 004336 539 KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK--IRHT 615 (760)
Q Consensus 539 ~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~--~~~~ 615 (760)
.--. +-+..+- ..++..+-.-....+.-+.=..++++.-. .+++
T Consensus 217 ~~l~~~e~~~le---------------------------------~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p 263 (400)
T COG3071 217 GLLSDEEAARLE---------------------------------QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDP 263 (400)
T ss_pred cCCChHHHHHHH---------------------------------HHHHHHHHHHHhccccchHHHHHHHhccHHhhcCh
Confidence 3222 0000000 11111111111111111111112222111 1122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA-SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK 694 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~-~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~ 694 (760)
.....++.-+...|+.++|.+...++++..-+.. ..+......++...=++..++.+...|+++..+..||..+++.+.
T Consensus 264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~ 343 (400)
T COG3071 264 ELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL 343 (400)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence 4444455555566666666666666555543221 111122234666777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 695 ENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 695 ~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
|.+|..+++.+++..|+.......+..+.+.|+..+|.+.++.++.
T Consensus 344 w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 344 WGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999999999888999999999999999999999985
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-11 Score=132.48 Aligned_cols=266 Identities=13% Similarity=-0.034 Sum_probs=182.8
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHcc----CHHHHHHHHhhhccccccCC
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHID----NWTIADCWLQLYDRWSSVDD 457 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g----~~~~A~~~l~l~~~~~~~~d 457 (760)
.....+..+..+...|++++|...+++++..+|++. .++.. +..+...| ....+...+
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~------~a~~~-~~~~~~~~~~~~~~~~~~~~l----------- 103 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL------LALKL-HLGAFGLGDFSGMRDHVARVL----------- 103 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH------HHHHH-hHHHHHhcccccCchhHHHHH-----------
Confidence 344456678888888999999999999999999995 44443 44444333 333333333
Q ss_pred cCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 458 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 458 ~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
......+|.....+..+|.++...|++++|+..++++++.+|++..++..+|.+++..|++++|+..+++++.
T Consensus 104 -------~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 104 -------PLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred -------hccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 3333566778888889999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--
Q 004336 538 MKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-- 614 (760)
Q Consensus 538 l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~-- 614 (760)
..|.. .. ....+..+|.++...|++++|+..|++++...+
T Consensus 177 ~~~~~~~~-------------------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~ 219 (355)
T cd05804 177 TWDCSSML-------------------------------------RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAES 219 (355)
T ss_pred ccCCCcch-------------------------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCC
Confidence 87643 00 023566788888888999999998888876544
Q ss_pred h-HHHH----HHHHHHHHcCCHHHHHHH--HHHH-HHhccC----cH--HHHHHHHhcCCHHHHHHHHHHHHhhCCC---
Q 004336 615 T-RAHQ----GLARVHFLKNNKTTAYEE--MTKL-IKKARN----NA--SAYEKRSEYCDRELTRADLEMVTQLDPL--- 677 (760)
Q Consensus 615 ~-~a~~----~La~~~~~~g~~~~A~~~--l~~a-l~~~~~----~~--~~~~~~~~~~~~~~A~~~l~kal~l~p~--- 677 (760)
. .... .+...+...|....+..+ +... ....+. .. .........|+.++|...++......-.
T Consensus 220 ~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 299 (355)
T cd05804 220 DPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADD 299 (355)
T ss_pred ChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCc
Confidence 1 1111 223333344433333332 1111 111111 01 1111122346778887777766443211
Q ss_pred ------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004336 678 ------RVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 709 (760)
Q Consensus 678 ------~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~ 709 (760)
........|.++...|++++|++.+..++...
T Consensus 300 ~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 300 NKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 24455678899999999999999999998754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.7e-12 Score=129.17 Aligned_cols=189 Identities=12% Similarity=0.048 Sum_probs=129.3
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAF 545 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~---~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~ 545 (760)
.++..+..++.+|..+...|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++..|++ .+
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~- 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA- 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-
Confidence 4466788999999999999999999999999999999875 688999999999999999999999999999987 11
Q ss_pred HHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhcchH-
Q 004336 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC--------GQLDLAADCYSNALKIRHTR- 616 (760)
Q Consensus 546 ~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~--------g~~~eA~~~~~~Al~~~~~~- 616 (760)
..+++.+|.++... |++++|+..|+++++..|..
T Consensus 107 -------------------------------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 107 -------------------------------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred -------------------------------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 22444555555443 66777777777777765542
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004336 617 -AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 617 -a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~ 695 (760)
++..+..+....+ . + ......+|..+...|++
T Consensus 150 ~~~~a~~~~~~~~~----------------------------------~---~----------~~~~~~~a~~~~~~g~~ 182 (235)
T TIGR03302 150 YAPDAKKRMDYLRN----------------------------------R---L----------AGKELYVARFYLKRGAY 182 (235)
T ss_pred hHHHHHHHHHHHHH----------------------------------H---H----------HHHHHHHHHHHHHcCCh
Confidence 1111111100000 0 0 01123456667777777
Q ss_pred HHHHHHHHHHHHcCCCcH---HHH-HHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004336 696 NEAIAELSRAIAFKADLH---LLH-LRAAFHEHTGDVLGALRDCRAALSVDP 743 (760)
Q Consensus 696 ~eAi~~l~kal~~~p~~~---~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P 743 (760)
.+|+..+++++...|+.+ ..+ ..+.++..+|++++|..+++......|
T Consensus 183 ~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 183 VAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777777766543 233 446777777777777776666555444
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-11 Score=136.79 Aligned_cols=320 Identities=14% Similarity=0.035 Sum_probs=240.1
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC
Q 004336 394 LLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 473 (760)
Q Consensus 394 l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~ 473 (760)
..+++...|...|-++++++|... .++..+|.+|....+...|...| +++.++|+.
T Consensus 469 ~~rK~~~~al~ali~alrld~~~a------paf~~LG~iYrd~~Dm~RA~kCf------------------~KAFeLDat 524 (1238)
T KOG1127|consen 469 CMRKNSALALHALIRALRLDVSLA------PAFAFLGQIYRDSDDMKRAKKCF------------------DKAFELDAT 524 (1238)
T ss_pred HhhhhHHHHHHHHHHHHhcccchh------HHHHHHHHHHHHHHHHHHHHHHH------------------HHHhcCCch
Confidence 456679999999999999999996 99999999999888888888877 444444433
Q ss_pred cH------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004336 474 KG------------------------------------VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 517 (760)
Q Consensus 474 ~~------------------------------------~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~ 517 (760)
++ ..|..+|..|.+.+++.+|+..|+.++..+|.+.+.|..+|.
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGe 604 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGE 604 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHH
Confidence 32 345557778888899999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-----------HHH
Q 004336 518 ILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-----------GQA 585 (760)
Q Consensus 518 i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-----------~~a 585 (760)
+|...|++..|++.|.++..++|.. .+.|..+...... |.+++|+..++..+.. +..
T Consensus 605 AY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~-----------GkYkeald~l~~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 605 AYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN-----------GKYKEALDALGLIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred HHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999999999999999999 7888888888887 8888888887766322 566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-----cch-----HHHHHHHHHHHH-----------------------cCCH-
Q 004336 586 LNNLGSVYVDCGQLDLAADCYSNALKI-----RHT-----RAHQGLARVHFL-----------------------KNNK- 631 (760)
Q Consensus 586 ~~~Lg~~y~~~g~~~eA~~~~~~Al~~-----~~~-----~a~~~La~~~~~-----------------------~g~~- 631 (760)
+..++..+.-.|=+.+|.+.++++++. .+. -.|..++.+..- .+..
T Consensus 674 ~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~ 753 (1238)
T KOG1127|consen 674 VIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALK 753 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCc
Confidence 666677777777778888888877762 111 122222221111 0100
Q ss_pred -----HHHHHHHHHHHHhcc------CcHHHHHHH-H---hcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004336 632 -----TTAYEEMTKLIKKAR------NNASAYEKR-S---EYC-DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 632 -----~~A~~~l~~al~~~~------~~~~~~~~~-~---~~~-~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~ 695 (760)
--|.+.+...++... +.+.-|... . .-+ +...|+..+.++++++.++...|+.||.+ ...|++
T Consensus 754 ~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnv 832 (1238)
T KOG1127|consen 754 KNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNV 832 (1238)
T ss_pred chhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchh
Confidence 012222222222111 222222211 1 112 23479999999999999999999999977 667999
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 696 NEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 696 ~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
.-|...|-+.+...|.....|++ +.++....|++.|...+.++..++|.|-..+
T Consensus 833 a~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~W 887 (1238)
T KOG1127|consen 833 ACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQW 887 (1238)
T ss_pred hhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHH
Confidence 99999999999999999988866 8888888999999999999999999987655
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.4e-12 Score=131.42 Aligned_cols=258 Identities=14% Similarity=0.121 Sum_probs=199.4
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..|...+-.++..|+|++|....++.+.++|... .+....+.++...+...+|...++-+... ....++.
T Consensus 83 a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~------k~~~r~~~c~~a~~~~i~A~~~~~~~~~~---~~anal~ 153 (486)
T KOG0550|consen 83 ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS------KGQLREGQCHLALSDLIEAEEKLKSKQAY---KAANALP 153 (486)
T ss_pred hhhhchhHHHHHHHHhHhhcccchhhheecCCCcc------ccccchhhhhhhhHHHHHHHHHhhhhhhh---HHhhhhh
Confidence 44444444444445599999999999999999997 55556778888888888888777322211 0011111
Q ss_pred HHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 463 VIYQMLESD---APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 463 ~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.+++.+..+ |.-..+-+..+.++.-.|++++|...--..+++++.+.++++..|.+++..++.+.|+..|++++.++
T Consensus 154 ~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld 233 (486)
T KOG0550|consen 154 TLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD 233 (486)
T ss_pred hhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC
Confidence 222222222 33345566678899999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----
Q 004336 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---- 615 (760)
Q Consensus 540 p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---- 615 (760)
|+. .....+-.. .+....+..-|.-.++.|+|.+|.++|..++.++|.
T Consensus 234 pdh------------------------~~sk~~~~~----~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 234 PDH------------------------QKSKSASMM----PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred hhh------------------------hhHHhHhhh----HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 998 111111100 122467778899999999999999999999998876
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC
Q 004336 616 --RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPL 677 (760)
Q Consensus 616 --~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~----~~~~~~A~~~l~kal~l~p~ 677 (760)
..+.+++.+..+.|+..+|+...+.++++++....++..++. ++++++|+++|+++.+...+
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 678899999999999999999999999999988877776653 47899999999999998765
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=132.99 Aligned_cols=291 Identities=17% Similarity=0.091 Sum_probs=193.4
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
.-|.-+++.|++...+..|+.+++.-.++. ..-...|..||.+|...++|++|+.+.. ++ -.+.+.
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl--~tLSAIYsQLGNAyfyL~DY~kAl~yH~-hD-----------ltlar~ 87 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDL--STLSAIYSQLGNAYFYLKDYEKALKYHT-HD-----------LTLARL 87 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHH--HHHHHHHHHhcchhhhHhhHHHHHhhhh-hh-----------HHHHHH
Confidence 346666777799999999999999876663 2223456678999999999999998760 00 012444
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p------~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
+...-..+...-++|+.+.-.|.|++|+.+..+-+.+.. ....+++++|.+|...|+.-.-. .|.
T Consensus 88 lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~---------~pe 158 (639)
T KOG1130|consen 88 LGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE---------APE 158 (639)
T ss_pred hcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC---------Chh
Confidence 444455566677899999999999999988877665432 24568899999998877632110 000
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhc----------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL----------RKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l----------~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
. .......+...++.|.+.|...+ ....++-+||..|+-.|+|+.|+..-+.-+.
T Consensus 159 e---------------~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ 223 (639)
T KOG1130|consen 159 E---------------KGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLE 223 (639)
T ss_pred h---------------cccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHH
Confidence 0 00000111122333333333321 1167899999999999999999999888777
Q ss_pred hcch--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 004336 612 IRHT--------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYR 683 (760)
Q Consensus 612 ~~~~--------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~ 683 (760)
+... +++.++|.+|...|+++.|+++|+..+.+....+.-- . .+...+
T Consensus 224 ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~---------v---------------EAQscY 279 (639)
T KOG1130|consen 224 IAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT---------V---------------EAQSCY 279 (639)
T ss_pred HHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh---------H---------------HHHHHH
Confidence 5332 7899999999999999999999998765443221100 1 123456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 684 YRAAVLMDSHKENEAIAELSRAIAFKADLH-------LLHLRAAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 684 ~La~~~~~~g~~~eAi~~l~kal~~~p~~~-------~~~l~a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
.||..|.-...+.+||+++.+-+.+..... ..|..+..+...|..++|+...++.++
T Consensus 280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 778888888888888888887776543322 223446666677888888877776665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=120.11 Aligned_cols=125 Identities=12% Similarity=-0.031 Sum_probs=97.1
Q ss_pred HHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHH
Q 004336 403 EHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 482 (760)
Q Consensus 403 ~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la 482 (760)
..+|+++++++|++ +..+|.++...|++++|...+ .+++..+|.+..+++.+|
T Consensus 13 ~~~~~~al~~~p~~---------~~~~g~~~~~~g~~~~A~~~~------------------~~al~~~P~~~~a~~~lg 65 (144)
T PRK15359 13 EDILKQLLSVDPET---------VYASGYASWQEGDYSRAVIDF------------------SWLVMAQPWSWRAHIALA 65 (144)
T ss_pred HHHHHHHHHcCHHH---------HHHHHHHHHHcCCHHHHHHHH------------------HHHHHcCCCcHHHHHHHH
Confidence 45677788887765 234677777888888888877 788888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHc
Q 004336 483 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALAD 554 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~ 554 (760)
.++...|++++|+..|++++.++|+++.+++++|.++...|++++|+..|++++++.|++ ..+.+++.+...
T Consensus 66 ~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 66 GTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888887 666666655443
|
|
| >KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=121.23 Aligned_cols=134 Identities=20% Similarity=0.339 Sum_probs=114.3
Q ss_pred CCccceeEEEEec---CeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCCh-
Q 004336 177 GDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP- 252 (760)
Q Consensus 177 ~~~~~~dv~~~~~---~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~- 252 (760)
+.+.++||+|.++ ++.||||+.|||+.|++.+ |.++-.|.. ++.++. +++++++...+.++||..|+ +.+
T Consensus 62 Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~deks-e~~~~d--Dad~Ea~~t~iRWIYTDEid-fk~d 135 (280)
T KOG4591|consen 62 EKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKS-EELDLD--DADFEAFHTAIRWIYTDEID-FKED 135 (280)
T ss_pred hcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcch-hhhccc--ccCHHHHHHhheeeeccccc-cccc
Confidence 5677999999998 5789999999999999764 333333332 344555 89999999999999999997 654
Q ss_pred -hhHHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCc
Q 004336 253 -NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317 (760)
Q Consensus 253 -~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~ 317 (760)
+-..++.++||+||++-|+..|+.-+...+ +++||+.++++|++.+...|..-|...+...+|.
T Consensus 136 D~~L~el~e~An~FqLe~Lke~C~k~l~a~l-~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~d 200 (280)
T KOG4591|consen 136 DEFLLELCELANRFQLELLKERCEKGLGALL-HVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDD 200 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-hHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 456899999999999999999999999998 7999999999999999999999999998888876
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.6e-10 Score=124.71 Aligned_cols=289 Identities=16% Similarity=0.039 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
+.+.....++...|++++|+.++ .+....-.+.....-..|.++.++|++++|...|+..++
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L------------------~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~ 66 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHL------------------EKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID 66 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------------------HhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66777888999999999999999 666666788888889999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhh-H
Q 004336 504 HAASDHERLVYEGWILYDT-----SHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCP-S 577 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~-----g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~-~ 577 (760)
.+|++...+..+..+.... .+.+.-...|++.....|...+...+....... ..+......| .
T Consensus 67 rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g-----------~~F~~~~~~yl~ 135 (517)
T PF12569_consen 67 RNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEG-----------DEFKERLDEYLR 135 (517)
T ss_pred HCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCH-----------HHHHHHHHHHHH
Confidence 9999999999888887333 356777888888888887763222222222111 3333333333 3
Q ss_pred hhccH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------cch----HHHHHHHHHHHHcCCHHHHHH
Q 004336 578 DRLRK--GQALNNLGSVYVDCGQLDLAADCYSNALKI---------------RHT----RAHQGLARVHFLKNNKTTAYE 636 (760)
Q Consensus 578 ~~l~~--~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~---------------~~~----~a~~~La~~~~~~g~~~~A~~ 636 (760)
..+++ +..+.++-.+|....+..-....+...... .++ .+++.+|..|...|++++|+.
T Consensus 136 ~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 136 PQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred HHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444 677777777777555544333444333220 122 467889999999999999999
Q ss_pred HHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C
Q 004336 637 EMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK--A 710 (760)
Q Consensus 637 ~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~--p 710 (760)
+.+++|+..|.....|...+ ..|++.+|...++.|-.+|+.+-.+....+..+.+.|+.++|.+.+..-.... |
T Consensus 216 ~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 216 YIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 99999999999998887765 45999999999999999999999999999999999999999999887654433 1
Q ss_pred Cc-----HHHH--HH-HHHHHHcCCHHHHHHHHHHHHhc
Q 004336 711 DL-----HLLH--LR-AAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 711 ~~-----~~~~--l~-a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
.. ...| +. |..|.+.|++..|+..|..+.+.
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11 1344 22 88899999999999999988764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-11 Score=119.83 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=95.6
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHCCC--HHHHHHHHHHHHhhcCC
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL-YDTSH--CEEGLRKAEESIQMKRS 541 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~-~~~g~--~eeAl~~~~~al~l~p~ 541 (760)
++++..+|+++..|+.+|.+|...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|...++++++.+|+
T Consensus 63 ~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~ 142 (198)
T PRK10370 63 QDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN 142 (198)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC
Confidence 8888888888889999999888899999999999999988898888888888864 66677 58888999999888888
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
+ ..++..+|..+...|++++|+.+|+++++..|+
T Consensus 143 ~----------------------------------------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 143 E----------------------------------------VTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred C----------------------------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8 778888888888888888888888888887666
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-11 Score=115.24 Aligned_cols=113 Identities=15% Similarity=0.036 Sum_probs=106.5
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
++..|.++...|++++|+..|++++..+|.+. .++..+|.++...|++++|+..+ .
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~lg~~~~~~g~~~~A~~~y------------------~ 82 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW------RAHIALAGTWMMLKEYTTAINFY------------------G 82 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHhhHHHHHHHH------------------H
Confidence 45678888888899999999999999999996 99999999999999999999999 9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 522 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~ 522 (760)
+++..+|+++.+++++|.++...|++++|+..|+++++..|+++..+.++|.+....
T Consensus 83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998877643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.6e-12 Score=128.97 Aligned_cols=236 Identities=15% Similarity=0.098 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHH
Q 004336 365 TVCFLERLLESAETD-RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 443 (760)
Q Consensus 365 ~~~lle~l~~~a~~~-~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~ 443 (760)
.+.+++..++...+. ......|.++|..|+..++|++|+++-..=|.+...-.+..|...+.-+||..+...|.|++|+
T Consensus 36 Gv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~ 115 (639)
T KOG1130|consen 36 GVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEAL 115 (639)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHH
Confidence 344444444444333 3344567789999999999999999877655554333334455567778999999999999999
Q ss_pred HHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q 004336 444 CWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC--------------------PEAAMRSLQLARQ 503 (760)
Q Consensus 444 ~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~--------------------~~~Ai~~l~kal~ 503 (760)
......- .+.+-+...-..+.++|++|.+|...|+ ++.|.++|..-++
T Consensus 116 ~cc~rhL------------d~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 116 TCCFRHL------------DFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred HHHHHHh------------HHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 8761000 0122222223457899999999998763 2345555554444
Q ss_pred hCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhH
Q 004336 504 HAAS------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 577 (760)
Q Consensus 504 ~~p~------~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~ 577 (760)
+... ...++-+||+.|+-+|+|++|+...+.-+.+...+ |.-...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef------GDrAae----------------------- 234 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF------GDRAAE----------------------- 234 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh------hhHHHH-----------------------
Confidence 4322 23467789999999999999999888777664444 110011
Q ss_pred hhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 578 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI----RHT----RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 578 ~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----~~~----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
..++.++|.++.-.|+++.|+++|+.++.+ ... ...|.||..|....++.+|+.+..+-+.+..
T Consensus 235 -----RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 235 -----RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred -----HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999887763 221 6778899999999999999999888776655
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.7e-10 Score=129.41 Aligned_cols=238 Identities=10% Similarity=-0.033 Sum_probs=161.6
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
.....++.++...+...+++++|+...+.+++..|+.. ..++.+|.++.+.++++.+... .+.+......+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i------~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~ 100 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI------SALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWA 100 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce------ehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchh
Confidence 34456777888888888999999999999999999996 9999999999999998887665 4444433333344
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.+..+.+.+...+.+..+++.+|.+|.+.|+.++|...|+++++.+|+++.++.++|..|... ++++|+.++.+++..
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~- 178 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR- 178 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence 455566666667777777788888888888888888888888888888888888888777777 777777777777632
Q ss_pred CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HH
Q 004336 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RA 617 (760)
Q Consensus 540 p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a 617 (760)
+...++|.++.+++.+.+..++. +.
T Consensus 179 -----------------------------------------------------~i~~kq~~~~~e~W~k~~~~~~~d~d~ 205 (906)
T PRK14720 179 -----------------------------------------------------FIKKKQYVGIEEIWSKLVHYNSDDFDF 205 (906)
T ss_pred -----------------------------------------------------HHhhhcchHHHHHHHHHHhcCcccchH
Confidence 44455666667777776665555 22
Q ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 004336 618 HQG-LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 690 (760)
Q Consensus 618 ~~~-La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~ 690 (760)
+.. +-.+....| +..+...+.-+.+ ......++++++..++.+++.+|++..+...++.+|.
T Consensus 206 f~~i~~ki~~~~~-~~~~~~~~~~l~~----------~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 206 FLRIERKVLGHRE-FTRLVGLLEDLYE----------PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhc-cchhHHHHHHHHH----------HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 221 222222222 3333333332222 2223356677777777777777777777777776665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=135.31 Aligned_cols=150 Identities=10% Similarity=-0.047 Sum_probs=139.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhh
Q 004336 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL 448 (760)
Q Consensus 369 le~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l 448 (760)
|-++...+....+.+.++..+|.+...+|++++|+.+++.++++.|++. .+...++.++.+.+++++|..++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~------~a~~~~a~~L~~~~~~eeA~~~~-- 143 (694)
T PRK15179 72 LPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS------EAFILMLRGVKRQQGIEAGRAEI-- 143 (694)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH------HHHHHHHHHHHHhccHHHHHHHH--
Confidence 4445555666677788999999999999999999999999999999995 99999999999999999999999
Q ss_pred hccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Q 004336 449 YDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 528 (760)
Q Consensus 449 ~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeA 528 (760)
++++..+|+++.+++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|
T Consensus 144 ----------------~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 144 ----------------ELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred ----------------HHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCh
Q 004336 529 LRKAEESIQMKRSF 542 (760)
Q Consensus 529 l~~~~~al~l~p~~ 542 (760)
...|+++++...+-
T Consensus 208 ~~~~~~a~~~~~~~ 221 (694)
T PRK15179 208 RDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHHhhCcc
Confidence 99999999876554
|
|
| >KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.2e-12 Score=129.02 Aligned_cols=139 Identities=16% Similarity=0.173 Sum_probs=127.8
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeE--ecCCCCCHHHHHHHHhccccCccCCCChhh
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDID--LSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~--~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~ 254 (760)
.+++-+||++++=|.+.+-|+.-|. -|+||.+||.|.++|+.+..|. |++..|+..+|..++.=.|...|. |..+.
T Consensus 65 ~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve-I~l~d 142 (488)
T KOG4682|consen 65 LQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE-IKLSD 142 (488)
T ss_pred hcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-ccHHH
Confidence 4667799999999999999999985 5899999999999999998664 556689999999999999999997 99999
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcc
Q 004336 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDC 318 (760)
Q Consensus 255 v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~ 318 (760)
|..+|++|.+|++++|.+-|.+-+...+ ++.++.++++.+-+.....+...|.+.++-++-..
T Consensus 143 v~gvlAaA~~lqldgl~qrC~evMie~l-spkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i 205 (488)
T KOG4682|consen 143 VVGVLAAACLLQLDGLIQRCGEVMIETL-SPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTI 205 (488)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhc-ChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhh
Confidence 9999999999999999999999999999 79999999999999999999999999998776543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-08 Score=106.59 Aligned_cols=337 Identities=10% Similarity=-0.030 Sum_probs=229.2
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..|...|..-..++++..|...|++||..+..+. ..|.-.+..-++..+...|..++
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~i------tLWlkYae~Emknk~vNhARNv~----------------- 130 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNI------TLWLKYAEFEMKNKQVNHARNVW----------------- 130 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccc------hHHHHHHHHHHhhhhHhHHHHHH-----------------
Confidence 4566777777888999999999999999998775 66777788888888888888888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
.+++..-|.--..|+....+-..+|+...|.+.|++-++..|+ ..+|...-..-...+..+.|...|++.+-..|+..
T Consensus 131 -dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~ 208 (677)
T KOG1915|consen 131 -DRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS 208 (677)
T ss_pred -HHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH
Confidence 8888888888888888888888888888888888888888775 35555555556666677777777777766666655
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-------HHHHHHHHHHHHHcCCHHHHHHH-----------
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-------GQALNNLGSVYVDCGQLDLAADC----------- 605 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-------~~a~~~Lg~~y~~~g~~~eA~~~----------- 605 (760)
.|...+..-... |...-+...|+.+... ...+...+..-..++.++.|...
T Consensus 209 ~wikyarFE~k~-----------g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 209 NWIKYARFEEKH-----------GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred HHHHHHHHHHhc-----------CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 555444443333 2222222222222111 11222222222222333333322
Q ss_pred ---------------------------------HHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHH
Q 004336 606 ---------------------------------YSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 650 (760)
Q Consensus 606 ---------------------------------~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~ 650 (760)
|++.++.+|. ++|...-++-...|+.+.-.+.|+++|...|+...
T Consensus 278 raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~e 357 (677)
T KOG1915|consen 278 RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASE 357 (677)
T ss_pred cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhH
Confidence 3333333444 78888888888889999999999999988884221
Q ss_pred ---------HHHHHH-----hcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 004336 651 ---------AYEKRS-----EYCDRELTRADLEMVTQLDPLR----VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 712 (760)
Q Consensus 651 ---------~~~~~~-----~~~~~~~A~~~l~kal~l~p~~----~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~ 712 (760)
++...+ ...+.+.+.+.|+.++.+-|.. +..|...|.-..++.+...|...+-.|+...|.+
T Consensus 358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~ 437 (677)
T KOG1915|consen 358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch
Confidence 111111 2357778888888888888854 3456667777778888888888888888888877
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 713 HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 713 ~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
....--..+-.++++++.....|++-|+.+|.+-.++.-|+.+.
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE 481 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence 65543345556667888888888888888888877776665543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-09 Score=114.61 Aligned_cols=304 Identities=18% Similarity=0.166 Sum_probs=205.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
+...|+|++|.....+++...|++. .+.+-.-.+..+.++|+.|+... +.-.....
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~------~a~~cKvValIq~~ky~~ALk~i------------------kk~~~~~~ 77 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDE------DAIRCKVVALIQLDKYEDALKLI------------------KKNGALLV 77 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcH------hhHhhhHhhhhhhhHHHHHHHHH------------------Hhcchhhh
Confidence 3456799999999999999999996 88888888889999999999666 22111111
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYA 551 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~ 551 (760)
. ....|..+.+.+++|..++|+..++ ..++.+...+...|.+++.+|+|++|+..|+..++.+.+. +........
T Consensus 78 ~-~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 78 I-NSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred c-chhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 1 1122788999999999999999998 4566667788899999999999999999999998876655 322221111
Q ss_pred --HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------c---ch-
Q 004336 552 --LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI----------R---HT- 615 (760)
Q Consensus 552 --l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----------~---~~- 615 (760)
-... ...+.+....- ....-+.++|.+.++...|+|.+|++.+++|+++ + +.
T Consensus 154 a~~a~l----------~~~~~q~v~~v--~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~ 221 (652)
T KOG2376|consen 154 AVAAAL----------QVQLLQSVPEV--PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEE 221 (652)
T ss_pred HHHHhh----------hHHHHHhccCC--CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHH
Confidence 1110 00011111000 0112678899999999999999999999999552 1 00
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHH----HHHH------hcCC-------------HH-------
Q 004336 616 ---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY----EKRS------EYCD-------------RE------- 662 (760)
Q Consensus 616 ---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~----~~~~------~~~~-------------~~------- 662 (760)
.....++.++..+|+..+|...|...+...+.+.... +.+. .+.+ ..
T Consensus 222 el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 222 ELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 4678899999999999999999999999887332110 0000 0000 00
Q ss_pred -----HH--------------HHHHHHHHhhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH--HHH
Q 004336 663 -----LT--------------RADLEMVTQLD----PLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL--LHL 717 (760)
Q Consensus 663 -----~A--------------~~~l~kal~l~----p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~--~~l 717 (760)
++ ....++..... |..............+...+.+|++.+....+..|.... +.+
T Consensus 302 s~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~ 381 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLL 381 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHH
Confidence 00 00111111112 222222233444444445788899999988888888842 235
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 004336 718 RAAFHEHTGDVLGALRDCR 736 (760)
Q Consensus 718 ~a~~~~~~g~~~~A~~~~~ 736 (760)
.+.+...+|+++.|++.+.
T Consensus 382 ~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 5889999999999999999
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.3e-11 Score=117.31 Aligned_cols=123 Identities=9% Similarity=0.030 Sum_probs=117.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH
Q 004336 396 RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 475 (760)
Q Consensus 396 ~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~ 475 (760)
.++.++++..++++++.+|++. .+|..+|.++...|++++|+..+ .+++..+|+++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~------~~w~~Lg~~~~~~g~~~~A~~a~------------------~~Al~l~P~~~ 107 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS------EQWALLGEYYLWRNDYDNALLAY------------------RQALQLRGENA 107 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCCH
Confidence 5588999999999999999996 99999999999999999999999 99999999999
Q ss_pred HHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 476 VLYFRQSLLL-LRLNC--PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 476 ~~~~~la~~~-~~~g~--~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.++..+|.++ ...|+ +++|.+.++++++.+|++..++..+|..+...|++++|+..++++++..|..
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9999999974 77787 5999999999999999999999999999999999999999999999998877
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-10 Score=130.98 Aligned_cols=171 Identities=12% Similarity=-0.012 Sum_probs=127.9
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..+.++-.+.-..+....+...+-+++..-.+++ ...+++.+||.+..+.|.+++|..++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~La~i~~~~g~~~ea~~~l----------------- 109 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYVRRYP---HTELFQVLVARALEAAHRSDEGLAVW----------------- 109 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhcc---ccHHHHHHHHHHHHHcCCcHHHHHHH-----------------
Confidence 4455566666667777777777777777766665 22467777777777777777777777
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
+.+++..|++..++.+++.++.+.+++++|+..+++++..+|+++.+++.+|.++.+.|++++|+..|++++..+|++
T Consensus 110 -~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~- 187 (694)
T PRK15179 110 -RGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF- 187 (694)
T ss_pred -HHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777766666
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
..++..+|..+...|+.++|...|+++++...+
T Consensus 188 ---------------------------------------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 188 ---------------------------------------ENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred ---------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 677888888888888888888888888775444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-09 Score=127.68 Aligned_cols=325 Identities=15% Similarity=0.068 Sum_probs=220.9
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHh-hCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILT-LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~-l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
...+......|++..+..+++.+-. ....++ ......+.++...|++++|..++ .
T Consensus 378 ~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~------~l~~~~a~~~~~~g~~~~a~~~l------------------~ 433 (903)
T PRK04841 378 LQHGWSLFNQGELSLLEECLNALPWEVLLENP------RLVLLQAWLAQSQHRYSEVNTLL------------------A 433 (903)
T ss_pred HHhHHHHHhcCChHHHHHHHHhCCHHHHhcCc------chHHHHHHHHHHCCCHHHHHHHH------------------H
Confidence 3344445555566555555443200 001111 33345666667778888887777 3
Q ss_pred HHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHCCCHHHHHHH
Q 004336 466 QMLESDAP---------KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-----ERLVYEGWILYDTSHCEEGLRK 531 (760)
Q Consensus 466 ~al~~~p~---------~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~-----~a~~~Lg~i~~~~g~~eeAl~~ 531 (760)
++....+. .......+|.++...|++++|...+++++...+... .+...+|.++...|++++|...
T Consensus 434 ~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~ 513 (903)
T PRK04841 434 RAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAM 513 (903)
T ss_pred HHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33322111 234455678889999999999999999998654422 3567789999999999999999
Q ss_pred HHHHHhhcCCh-------HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH------------HHHHHHHHHH
Q 004336 532 AEESIQMKRSF-------EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK------------GQALNNLGSV 592 (760)
Q Consensus 532 ~~~al~l~p~~-------~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~------------~~a~~~Lg~~ 592 (760)
+++++...... .+...++.++... |.+++|...+.+.+.. ...+..+|.+
T Consensus 514 ~~~al~~~~~~g~~~~~~~~~~~la~~~~~~-----------G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 514 MQQTEQMARQHDVYHYALWSLLQQSEILFAQ-----------GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 99998764322 3445667777776 7777777666655221 2345678999
Q ss_pred HHHcCCHHHHHHHHHHHHhh----cch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH----H-H------HHH
Q 004336 593 YVDCGQLDLAADCYSNALKI----RHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA----S-A------YEK 654 (760)
Q Consensus 593 y~~~g~~~eA~~~~~~Al~~----~~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~----~-~------~~~ 654 (760)
+...|++++|...+++++.. .+. ..+..+|.++...|++++|...+.++....+... . . ...
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 99999999999999999874 111 5667789999999999999999999877643211 0 0 011
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHH-HHHHHHH
Q 004336 655 RSEYCDRELTRADLEMVTQLDPLRVY----PYRYRAAVLMDSHKENEAIAELSRAIAFKADL------HLLH-LRAAFHE 723 (760)
Q Consensus 655 ~~~~~~~~~A~~~l~kal~l~p~~~~----~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~------~~~~-l~a~~~~ 723 (760)
....|+.+.|...+.......+.... .+..+|.++...|++++|...+++++...... ...+ +.+..+.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 12347788888877665543322222 24678999999999999999999998753221 1122 4488888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcH
Q 004336 724 HTGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 724 ~~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
..|+.++|...+.+++++.....
T Consensus 743 ~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HcCCHHHHHHHHHHHHHHhCccc
Confidence 99999999999999998765433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.4e-10 Score=112.65 Aligned_cols=175 Identities=18% Similarity=0.062 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHH
Q 004336 401 EAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 480 (760)
Q Consensus 401 eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~ 480 (760)
.+...+-+....+|++. .. ..++..+...|+-+.+..++ .+....+|.+..+...
T Consensus 51 ~a~~al~~~~~~~p~d~------~i-~~~a~a~~~~G~a~~~l~~~------------------~~~~~~~~~d~~ll~~ 105 (257)
T COG5010 51 GAAAALGAAVLRNPEDL------SI-AKLATALYLRGDADSSLAVL------------------QKSAIAYPKDRELLAA 105 (257)
T ss_pred HHHHHHHHHHhcCcchH------HH-HHHHHHHHhcccccchHHHH------------------hhhhccCcccHHHHHH
Confidence 35566667778889885 66 77888888888888888888 8888888999999989
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCC
Q 004336 481 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 560 (760)
Q Consensus 481 la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~ 560 (760)
+|....+.|++.+|+..++++....|+++++|..+|.+|.+.|++++|...|.+++++.|+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~------------------ 167 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE------------------ 167 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC------------------
Confidence 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 561 CSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTTAYEEM 638 (760)
Q Consensus 561 ~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~--~~a~~~La~~~~~~g~~~~A~~~l 638 (760)
+.+.+|+|..|.-.|+++.|..++..+....+ ..+..+++.+....|++.+|.+..
T Consensus 168 ----------------------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 168 ----------------------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ----------------------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88999999999999999999999999887443 389999999999999999988776
Q ss_pred HH
Q 004336 639 TK 640 (760)
Q Consensus 639 ~~ 640 (760)
.+
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 54
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.7e-09 Score=105.53 Aligned_cols=338 Identities=11% Similarity=-0.057 Sum_probs=215.0
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccc-----------cccCC
Q 004336 389 LGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW-----------SSVDD 457 (760)
Q Consensus 389 lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~-----------~~~~d 457 (760)
+|..++..|+|++|...|+.+...+.-+. +.+.+++.++.-.|+|.+|.......... -...|
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~------el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPA------ELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCc------ccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 45566666699999999999887554443 77888999999999999998776110000 00011
Q ss_pred cCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 458 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 458 ~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.+.+..+++.+ .+..+-...+|.+....-.|.+|+..|++.+..+|+....-.+++.+|+++.-++-+.+.+.--++
T Consensus 137 Ek~~~~fh~~L---qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 137 EKRILTFHSSL---QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHHHHHHH---hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 11111122222 222344566777888888999999999999999999998999999999999999999999999999
Q ss_pred hcCCh-HHHHHHHHHHHcccCCCCcchhhhhH--------H-----------------HHHHhhhHhhccH-HHHHHHHH
Q 004336 538 MKRSF-EAFFLKAYALADSSQDSSCSSTVVSL--------L-----------------EDALKCPSDRLRK-GQALNNLG 590 (760)
Q Consensus 538 l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~--------l-----------------eeAl~~~~~~l~~-~~a~~~Lg 590 (760)
..|+. -+...++..+...-.... ....+.. + +.|++.....++. +++..++.
T Consensus 214 q~pdStiA~NLkacn~fRl~ngr~-ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~ 292 (557)
T KOG3785|consen 214 QFPDSTIAKNLKACNLFRLINGRT-AEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI 292 (557)
T ss_pred hCCCcHHHHHHHHHHHhhhhccch-hHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence 99998 666666655544311111 1111111 1 1122222222222 78899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcc----------CcHHHHHHHHh
Q 004336 591 SVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIK---KAR----------NNASAYEKRSE 657 (760)
Q Consensus 591 ~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~---~~~----------~~~~~~~~~~~ 657 (760)
..|..+++..+|+...+.. .+..+.-+...|.++...|+-....+.++-+-. .-. .-..+......
T Consensus 293 iYyL~q~dVqeA~~L~Kdl-~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDL-DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred eeecccccHHHHHHHHhhc-CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 9999999999999877542 333335555667777777766555554443222 111 11111122223
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH--HHHHHHHHcCCHHHHHHHH
Q 004336 658 YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH--LRAAFHEHTGDVLGALRDC 735 (760)
Q Consensus 658 ~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~--l~a~~~~~~g~~~~A~~~~ 735 (760)
+.++++.+.++...-..--++-...+++|.++...|++.+|.+.|-+.-...-.+..++ +.+.+|.+.|..+-|...+
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34567777666666666666666777888888888888888888876654332333333 4477777777777776655
Q ss_pred HH
Q 004336 736 RA 737 (760)
Q Consensus 736 ~~ 737 (760)
-+
T Consensus 452 lk 453 (557)
T KOG3785|consen 452 LK 453 (557)
T ss_pred Hh
Confidence 43
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-10 Score=105.83 Aligned_cols=115 Identities=12% Similarity=0.027 Sum_probs=110.0
Q ss_pred HHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHH
Q 004336 404 HLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL 483 (760)
Q Consensus 404 ~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~ 483 (760)
..|++++..+|++. .+...+|..+...|++++|..++ ++++..+|.++.+++.+|.
T Consensus 4 ~~~~~~l~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~~la~ 59 (135)
T TIGR02552 4 ATLKDLLGLDSEQL------EQIYALAYNLYQQGRYDEALKLF------------------QLLAAYDPYNSRYWLGLAA 59 (135)
T ss_pred hhHHHHHcCChhhH------HHHHHHHHHHHHcccHHHHHHHH------------------HHHHHhCCCcHHHHHHHHH
Confidence 46889999999995 88899999999999999999999 9999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 484 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
++...|++++|+..+++++..+|.++..++.+|.++...|++++|+..++++++.+|++
T Consensus 60 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 60 CCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999988
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-09 Score=124.62 Aligned_cols=215 Identities=10% Similarity=-0.068 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.++..+...+...+++++|+... ..++..+|+....++.+|.++.+.+++++|... .++.
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~------------------~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~ 91 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDIC------------------EEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID 91 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH------------------HHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh
Confidence 77777777777888888888777 777788888888888888888777777776655 5555
Q ss_pred hCCCcH-------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchh
Q 004336 504 HAASDH-------------------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 564 (760)
Q Consensus 504 ~~p~~~-------------------~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~ 564 (760)
..+.+. .+++.+|.+|..+|+.++|...|+++++.+|++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n---------------------- 149 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN---------------------- 149 (906)
T ss_pred hcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc----------------------
Confidence 544444 677777777777788888888888888777777
Q ss_pred hhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 565 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKK 644 (760)
Q Consensus 565 ~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~ 644 (760)
+.+++++|..|... ++++|+.++.+|+.. +...+++.++.....+.+..
T Consensus 150 ------------------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 150 ------------------PEIVKKLATSYEEE-DKEKAITYLKKAIYR------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred ------------------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------------HHhhhcchHHHHHHHHHHhc
Confidence 67777777777777 788888888777643 55566777777777777777
Q ss_pred ccCcHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHH
Q 004336 645 ARNNASAYEKRSEYCDRELTRADLEMVTQL--DPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAF 721 (760)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~A~~~l~kal~l--~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~ 721 (760)
.|......... .++.... .-.....+.-+-..|...++|++++..++.+++..|.+..+... +.+
T Consensus 199 ~~~d~d~f~~i------------~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~ 266 (906)
T PRK14720 199 NSDDFDFFLRI------------ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRF 266 (906)
T ss_pred CcccchHHHHH------------HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 77555443322 1111111 11122334445567888899999999999999999998766533 444
Q ss_pred HH
Q 004336 722 HE 723 (760)
Q Consensus 722 ~~ 723 (760)
|.
T Consensus 267 y~ 268 (906)
T PRK14720 267 YK 268 (906)
T ss_pred HH
Confidence 44
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.1e-09 Score=101.56 Aligned_cols=175 Identities=20% Similarity=0.174 Sum_probs=148.9
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
+-+.-.+.+..|+.+.|..++++.....|+.. ....+.|..+...|++++|+.++ .
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~------RV~~lkam~lEa~~~~~~A~e~y------------------~ 110 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSK------RVGKLKAMLLEATGNYKEAIEYY------------------E 110 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh------hHHHHHHHHHHHhhchhhHHHHH------------------H
Confidence 33444555667799999999999999999996 88888999999999999999999 9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 545 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~ 545 (760)
..++.+|.+...+-+.-.+...+|+.-+|++.+...++..+.++++|..++.+|...|+|++|.-.+++.+-++|.+
T Consensus 111 ~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n--- 187 (289)
T KOG3060|consen 111 SLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN--- 187 (289)
T ss_pred HHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc---
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhcch--HHHHH
Q 004336 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD---CGQLDLAADCYSNALKIRHT--RAHQG 620 (760)
Q Consensus 546 ~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~---~g~~~eA~~~~~~Al~~~~~--~a~~~ 620 (760)
+..+..+|.+++. ..++.-|..+|.+++++++. +++++
T Consensus 188 -------------------------------------~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 188 -------------------------------------PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred -------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 2223333333333 34678899999999998885 56665
Q ss_pred HHHH
Q 004336 621 LARV 624 (760)
Q Consensus 621 La~~ 624 (760)
+-.+
T Consensus 231 I~lc 234 (289)
T KOG3060|consen 231 IYLC 234 (289)
T ss_pred HHHH
Confidence 5443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-07 Score=102.16 Aligned_cols=350 Identities=14% Similarity=0.070 Sum_probs=197.7
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
+++|...|+++ ..++|+..++ ..++... ..+.+.|.++++.|+|++|...|+-... ...++.+
T Consensus 83 fEKAYc~Yrln-------k~Dealk~~~---~~~~~~~------~ll~L~AQvlYrl~~ydealdiY~~L~k-n~~dd~d 145 (652)
T KOG2376|consen 83 FEKAYCEYRLN-------KLDEALKTLK---GLDRLDD------KLLELRAQVLYRLERYDEALDIYQHLAK-NNSDDQD 145 (652)
T ss_pred HHHHHHHHHcc-------cHHHHHHHHh---cccccch------HHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCchHH
Confidence 45666666666 8888888877 4455553 5677778888888888888877743322 1112211
Q ss_pred c--------HHH-----HHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCc--------HH
Q 004336 460 S--------LSV-----IYQMLESDAP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASD--------HE 510 (760)
Q Consensus 460 s--------l~~-----~~~al~~~p~-~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~-------p~~--------~~ 510 (760)
+ +.. ..+.+...|+ .-+.+|+.|.++...|+|.+|++.+++++.+. ..+ ..
T Consensus 146 ~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 146 EERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 1 000 1222222343 56789999999999999999999999995431 111 23
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHH-----HHHHHHHHcccCCCCc----chhhhh-HHHHHHhhhHhhc
Q 004336 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF-----FLKAYALADSSQDSSC----SSTVVS-LLEDALKCPSDRL 580 (760)
Q Consensus 511 a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~-----~~la~~l~~~~~~~~~----~~~~~~-~leeAl~~~~~~l 580 (760)
+...++.++..+|+.++|...|...++.+|-++.. +++-.+-......++. -..... ..+..+..+.. -
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~ 304 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-K 304 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-H
Confidence 57789999999999999999999999998877222 2222211111111100 000001 11111111111 1
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH-HHHH---
Q 004336 581 RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA-SAYE--- 653 (760)
Q Consensus 581 ~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~-~~~~--- 653 (760)
++..++.+.+...+..+.-+.+.+.-...-...|. .++. ......+...+..|...+....+..|... .+..
T Consensus 305 qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll-~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~a 383 (652)
T KOG2376|consen 305 QKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILL-QEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRA 383 (652)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHH-HHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHH
Confidence 12556666777666666666655544333222332 1221 12222222357777777777777777541 1111
Q ss_pred -HHHhcCCHHHHHHHHHH--------HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHH----H
Q 004336 654 -KRSEYCDRELTRADLEM--------VTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF----KADLHLL----H 716 (760)
Q Consensus 654 -~~~~~~~~~~A~~~l~k--------al~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~----~p~~~~~----~ 716 (760)
.....|++..|+..+.. ..... ..+.+-..+-..++..++-+-|...+..|+.. .+....+ +
T Consensus 384 Ql~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 384 QLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 12344777777777762 22221 12333344455666666655566666555532 1122211 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 717 LRAAFHEHTGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 717 l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
..+.+..+.|+-++|...+++.++.+|++.+++
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l 495 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKFNPNDTDLL 495 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHhCCchHHHH
Confidence 336666666888888888888888888888765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-10 Score=104.44 Aligned_cols=112 Identities=11% Similarity=0.038 Sum_probs=97.8
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
+.+++..+|++..+.+.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|++
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~- 84 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD- 84 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 4788888888888888899999999999999999999888888888899999999998899999999999888888887
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
...++.+|.++...|++++|+..|+++++.+|.
T Consensus 85 ---------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 85 ---------------------------------------PRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred ---------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 678888888888888888888888888887665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-09 Score=104.27 Aligned_cols=171 Identities=15% Similarity=0.070 Sum_probs=143.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
-+....+|++..+ .+++..+...|+-+.+..+..++...+|.+...+..+|......|++.+|+..++++..+.|++
T Consensus 57 ~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d-- 133 (257)
T COG5010 57 GAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD-- 133 (257)
T ss_pred HHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC--
Confidence 5667778999888 9999999999999999999999888899998888889999999999999999999999999999
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHH
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLA 622 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La 622 (760)
..+|+.+|.+|.+.|++++|...|.++++..+. .+..++|
T Consensus 134 --------------------------------------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 134 --------------------------------------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175 (257)
T ss_pred --------------------------------------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence 788899999999999999999999999996555 8889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 623 RVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAEL 702 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l 702 (760)
..+...|+++.|..++..+.. ..+.+..+..+++.+...+|++++|.+..
T Consensus 176 ms~~L~gd~~~A~~lll~a~l------------------------------~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYL------------------------------SPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHh------------------------------CCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 999999998777666665433 33445566677788888888888888776
Q ss_pred HHHH
Q 004336 703 SRAI 706 (760)
Q Consensus 703 ~kal 706 (760)
.+-+
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-10 Score=113.18 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=84.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHH
Q 004336 655 RSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALR 733 (760)
Q Consensus 655 ~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~ 733 (760)
....+++.+|+..|.+|++++|+++..|.++|.+|.++|.++.|++..+.++.++|.....|.+ +.+|..+|++++|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3344677888888888888888888888888888888888888888888888888888877766 788888888888888
Q ss_pred HHHHHHhcCCCcHHHHHHHHHhh
Q 004336 734 DCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 734 ~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
.|+++|+++|++.....-+..++
T Consensus 171 aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 171 AYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHhhhccCCCcHHHHHHHHHHH
Confidence 88888888888887777666655
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-08 Score=112.79 Aligned_cols=265 Identities=12% Similarity=0.053 Sum_probs=187.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYAL 552 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l 552 (760)
+.++......++.+.|++++|++.++..-....+....+-..|.++..+|++++|...|+..++.+|++ ..+..+..++
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 356677788899999999999999999988889999999999999999999999999999999999999 7777777776
Q ss_pred Hccc-CCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 004336 553 ADSS-QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDL-AADCYSNALKIRHTRAHQGLARVHFLKNN 630 (760)
Q Consensus 553 ~~~~-~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~e-A~~~~~~Al~~~~~~a~~~La~~~~~~g~ 630 (760)
.... ..+.........+++-...|.+. .+...+...+..-..|.. +..+....+..+-+..+.++-.+|....+
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s----~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRS----DAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK 158 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccc----cchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhH
Confidence 4432 11222233334444444433332 222222222222223433 33444555555555666666666664444
Q ss_pred HHHHHHHHHHHHHhc---------------cCc--HHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 004336 631 KTTAYEEMTKLIKKA---------------RNN--ASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVL 689 (760)
Q Consensus 631 ~~~A~~~l~~al~~~---------------~~~--~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~ 689 (760)
..-....+....... |+. .|++.-++ ..|++++|+..++++++..|+.++.|...|.++
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Karil 238 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 333333333333221 111 24444333 348999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 690 MDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 690 ~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
...|++.+|.+.++.|..+++.+..+... +.++.+.|+.++|.+.+...-.-+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 99999999999999999999988877755 788888899999999888765443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-11 Score=132.18 Aligned_cols=133 Identities=17% Similarity=0.275 Sum_probs=115.1
Q ss_pred ceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccc-cCccCC----CChhhH
Q 004336 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV-TGSLNG----VTPNLL 255 (760)
Q Consensus 181 ~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~y-t~~~~~----~~~~~v 255 (760)
.|||++. +|++++||+.+|.+.+.||..||..-+.|+..-.+... -|+.+.|+.|+||.| +.++.. -..+-.
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~--p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLS--PLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecC--cchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 3555555 78889999999999999999999999999998666654 477999999999999 665531 145678
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCc
Q 004336 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317 (760)
Q Consensus 256 ~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~ 317 (760)
.++|..|+.+-+.+|+..|+.-|-..+ +..+|-.++++|.-.++..|...|++|+..++..
T Consensus 789 ~~il~iaDqlli~~Lk~Ice~~ll~kl-~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~ 849 (1267)
T KOG0783|consen 789 FEILSIADQLLILELKSICEQSLLRKL-NLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEF 849 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHh-cccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999988 7999999999999999999999999998776543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=111.11 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
...+|..+-.-|.-+++.++|.+|+..|.+||+++|+++ -.|.+.+.+|.++|.++.|+.-.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA------VyycNRAAAy~~Lg~~~~AVkDc------------ 138 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA------VYYCNRAAAYSKLGEYEDAVKDC------------ 138 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc------hHHHHHHHHHHHhcchHHHHHHH------------
Confidence 345666677778888888899999999999999999996 56667888888888888888888
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~e 526 (760)
+.++.++|....+|.++|.+|..+|++++|++.|+++++++|++...+.+|.++-...+...
T Consensus 139 ------e~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 139 ------ESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ------HHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888888888888888888888888888888877777777766666554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.2e-07 Score=96.02 Aligned_cols=294 Identities=12% Similarity=0.026 Sum_probs=238.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..|.-.|..-..++++..|...+ ++++..+..+..+|...+..-++.++...|...+.+|+.
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~------------------ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVF------------------ERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH------------------HHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 56666777777888888888888 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh--cc
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--LR 581 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--l~ 581 (760)
+-|.....|+..-.+-..+|+..-|.+.|++-+...|+..+|......-... ..++.|..+|++. ..
T Consensus 136 ~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRy-----------keieraR~IYerfV~~H 204 (677)
T KOG1915|consen 136 ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRY-----------KEIERARSIYERFVLVH 204 (677)
T ss_pred hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHheec
Confidence 9999999999998888999999999999999999999987777665554444 7788999999988 33
Q ss_pred H-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-cch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc--HHHHH
Q 004336 582 K-GQALNNLGSVYVDCGQLDLAADCYSNALKI-RHT----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN--ASAYE 653 (760)
Q Consensus 582 ~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-~~~----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~--~~~~~ 653 (760)
| ...|...+..-.+.|+...|...|++|++. ... ..+...|.--..+..++.|.-.|+-++..-|.. ..+|.
T Consensus 205 P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k 284 (677)
T KOG1915|consen 205 PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYK 284 (677)
T ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 4 788888999999999999999999999983 222 455566666677888999999999999988855 33333
Q ss_pred HH----HhcCCHH---HH-----HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--H-----
Q 004336 654 KR----SEYCDRE---LT-----RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH--L----- 714 (760)
Q Consensus 654 ~~----~~~~~~~---~A-----~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~--~----- 714 (760)
.. ..+|+.. ++ .-.|++.+..+|.+-.+|...-.+....|+.+.-.+.|++|+...|... .
T Consensus 285 ~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RY 364 (677)
T KOG1915|consen 285 KYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRY 364 (677)
T ss_pred HHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHH
Confidence 32 2345532 22 3357888999999999999998888899999999999999998777543 1
Q ss_pred --HHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCcH
Q 004336 715 --LHLRAAFHE--HTGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 715 --~~l~a~~~~--~~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
+|++-.+|. ...|.+.+.+.|+.+|++-|...
T Consensus 365 IYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 365 IYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 123334443 23788999999999999888643
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-09 Score=118.44 Aligned_cols=218 Identities=15% Similarity=0.120 Sum_probs=163.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
|........++.++...|-...|+..|++. ..|-....+|...|+..+|.....+-++.+|+...|..+|.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 556667778999999999999999999874 567778899999999999999999999955555889999999
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcC
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKN 629 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g 629 (760)
..+. ..+++|.+...... +.+...+|......++|+++..+++..++++|- ..|+++|-+..+.+
T Consensus 467 ~~d~-----------s~yEkawElsn~~s--arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 467 LHDP-----------SLYEKAWELSNYIS--ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred ccCh-----------HHHHHHHHHhhhhh--HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh
Confidence 9988 78888887765543 335566677777789999999999999999887 89999999999999
Q ss_pred CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004336 630 NKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 709 (760)
Q Consensus 630 ~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~ 709 (760)
++..|.+.|... +.++|++..+|++++.+|+..|+-.+|...+++|++.+
T Consensus 534 k~q~av~aF~rc------------------------------vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 534 KEQAAVKAFHRC------------------------------VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hhHHHHHHHHHH------------------------------hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 886666666555 45555555566666666666666666666666666665
Q ss_pred CCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHh
Q 004336 710 ADLHLLHLR-AAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 710 p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
-++...|.+ ..+....|.+++|++.|.+.+.
T Consensus 584 ~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 584 YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 555555433 3344445666666666666554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.8e-08 Score=96.55 Aligned_cols=202 Identities=16% Similarity=0.105 Sum_probs=148.2
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
+.++-.+.+.+.+...+.-..-......+..+.++....|+.+.|...+ .+.-...|+...+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~------------------~~L~~~fp~S~RV 88 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCI------------------NQLRDRFPGSKRV 88 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHH------------------HHHHHhCCCChhH
Confidence 4455555555555433322000000134445666667777888887777 7766667888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccC
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 557 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~ 557 (760)
-...|..+...|++++|+++|+..++.+|.+...+-..-.+...+|+.-+|++.+..-++..+.+
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D--------------- 153 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND--------------- 153 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc---------------
Confidence 88888888888888888888888888888888888877778888888888888888888887777
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHH
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~ 635 (760)
.++|..++.+|+..|+|++|.-||++.+-+.|. ..+..+|.+++-+|..
T Consensus 154 -------------------------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~---- 204 (289)
T KOG3060|consen 154 -------------------------QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGA---- 204 (289)
T ss_pred -------------------------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH----
Confidence 899999999999999999999999999988877 6677888888887743
Q ss_pred HHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 004336 636 EEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRY 684 (760)
Q Consensus 636 ~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~ 684 (760)
.+..-|.++|.++++++|.+..+++.
T Consensus 205 -----------------------eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 205 -----------------------ENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred -----------------------HHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 12345556666666666655555543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-07 Score=117.61 Aligned_cols=298 Identities=14% Similarity=0.014 Sum_probs=213.3
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCc---chhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYR---MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~---~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
...+.+++..|++++|..+++.+....+... ...........++.++...|++++|..++
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~----------------- 475 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLA----------------- 475 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHH-----------------
Confidence 4556677788999999999999876543211 11112345566888899999999999999
Q ss_pred HHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHH
Q 004336 464 IYQMLESDAPK-----GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKA 532 (760)
Q Consensus 464 ~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~ 532 (760)
++++...+.. ..+...+|.++...|++++|...+++++...... ..++..+|.++...|++++|...+
T Consensus 476 -~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 554 (903)
T PRK04841 476 -ELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ 554 (903)
T ss_pred -HHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7776644332 2356778999999999999999999998763321 245678899999999999999999
Q ss_pred HHHHhhcCC--------h-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc---------HHHHHHHHHHHHH
Q 004336 533 EESIQMKRS--------F-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR---------KGQALNNLGSVYV 594 (760)
Q Consensus 533 ~~al~l~p~--------~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~---------~~~a~~~Lg~~y~ 594 (760)
++++..... . ..+..+|.++... |++++|...+.+.+. ....+..+|.++.
T Consensus 555 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 555 EKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW-----------ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 999875221 1 2344566677666 777777766665521 1556777899999
Q ss_pred HcCCHHHHHHHHHHHHhhcch-----HHHH----HHHHHHHHcCCHHHHHHHHHHHHHhccCcH--------HHHHHHHh
Q 004336 595 DCGQLDLAADCYSNALKIRHT-----RAHQ----GLARVHFLKNNKTTAYEEMTKLIKKARNNA--------SAYEKRSE 657 (760)
Q Consensus 595 ~~g~~~eA~~~~~~Al~~~~~-----~a~~----~La~~~~~~g~~~~A~~~l~~al~~~~~~~--------~~~~~~~~ 657 (760)
..|++++|...+.++..+... .... .....+...|+.+.|...+.......+... ........
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 999999999999999764211 1111 122445568999999998877554322111 11222345
Q ss_pred cCCHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Q 004336 658 YCDRELTRADLEMVTQLD------PLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH 713 (760)
Q Consensus 658 ~~~~~~A~~~l~kal~l~------p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~ 713 (760)
.|++++|...+++++... +....++..+|.++...|+.++|...+.++++......
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 589999999999998752 22345678899999999999999999999998765544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.9e-09 Score=115.13 Aligned_cols=212 Identities=15% Similarity=0.100 Sum_probs=165.8
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
.++.+++..|-...|+..|++. ..+-....+|...|+..+|..+. .+.
T Consensus 403 ~laell~slGitksAl~I~Erl--------------emw~~vi~CY~~lg~~~kaeei~------------------~q~ 450 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL--------------EMWDPVILCYLLLGQHGKAEEIN------------------RQE 450 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH--------------HHHHHHHHHHHHhcccchHHHHH------------------HHH
Confidence 4455555566999999999886 34445667888888888998888 777
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHH
Q 004336 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 547 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~ 547 (760)
++ .|.++..|..+|.+....--|++|.++.+. .+..+...+|...+..++|+++...++.+++++|-.
T Consensus 451 le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq----- 518 (777)
T KOG1128|consen 451 LE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNY------ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ----- 518 (777)
T ss_pred hc-CCCcchhHHHhhhhccChHHHHHHHHHhhh------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-----
Confidence 77 677888888888877777666666666544 244577888888888999999999999999999988
Q ss_pred HHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHH
Q 004336 548 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVH 625 (760)
Q Consensus 548 la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~ 625 (760)
...|+.+|.+..+.++++.|.++|...+..+|. .+|++++.+|
T Consensus 519 -----------------------------------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 519 -----------------------------------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred -----------------------------------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 789999999999999999999999999997776 9999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 626 FLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRA 705 (760)
Q Consensus 626 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~ka 705 (760)
.+.|+..+|...++++++- +-.++..|-|.-.+..+.|.+++|++.|.+.
T Consensus 564 i~~~~k~ra~~~l~EAlKc------------------------------n~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKC------------------------------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHhhhHHHHHHHHHHhhc------------------------------CCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999987766666655544 4444555555566667777777777777776
Q ss_pred HHc
Q 004336 706 IAF 708 (760)
Q Consensus 706 l~~ 708 (760)
+.+
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.6e-08 Score=99.00 Aligned_cols=272 Identities=17% Similarity=0.121 Sum_probs=184.4
Q ss_pred HHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 004336 434 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 513 (760)
Q Consensus 434 ~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~ 513 (760)
.+..+|+.|+..+ ..-.+.+|.+-..+..+|.+|....++..|..+|++.-...|.......
T Consensus 21 I~d~ry~DaI~~l------------------~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 21 IRDARYADAIQLL------------------GSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred HHHhhHHHHHHHH------------------HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 5667788888888 7788888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhc--cHHHHHHHH
Q 004336 514 YEGWILYDTSHCEEGLRKAEESIQMKRSF--EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL--RKGQALNNL 589 (760)
Q Consensus 514 ~Lg~i~~~~g~~eeAl~~~~~al~l~p~~--~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l--~~~~a~~~L 589 (760)
+.+..+++.+.+.+|+......... |.. +....-+.+.... +.+..+....++.. ..+...++.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse-----------~Dl~g~rsLveQlp~en~Ad~~in~ 150 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSE-----------GDLPGSRSLVEQLPSENEADGQINL 150 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhccc-----------ccCcchHHHHHhccCCCccchhccc
Confidence 9999999999999999988776543 222 2222222222222 22222222222222 127888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----cCcHH--HHH---HHHhc
Q 004336 590 GSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTTAYEEMTKLIKKA----RNNAS--AYE---KRSEY 658 (760)
Q Consensus 590 g~~y~~~g~~~eA~~~~~~Al~~~~--~~a~~~La~~~~~~g~~~~A~~~l~~al~~~----~~~~~--~~~---~~~~~ 658 (760)
|.+.++.|+|++|++-|+.|++... +-.-++++.++++.|+++.|+++...+++.. |..+. ... .++-.
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg 230 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG 230 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc
Confidence 9999999999999999999999643 3677899999999999999999998888764 32110 000 00000
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHcCCHHHHH
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH------LLHLRAAFHEHTGDVLGAL 732 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~------~~~l~a~~~~~~g~~~~A~ 732 (760)
+-..-++..+. .+++..+.++++.|+++.|.+.+.. +.|... .+|- -.+-...|++.+..
T Consensus 231 Nt~~lh~Sal~----------eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN-~Al~n~~~~p~~g~ 296 (459)
T KOG4340|consen 231 NTLVLHQSALV----------EAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHN-QALMNMDARPTEGF 296 (459)
T ss_pred chHHHHHHHHH----------HHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhH-HHHhcccCCccccH
Confidence 01112222222 3344456778888888877766543 333221 2222 22223336677777
Q ss_pred HHHHHHHhcCCCcHHHH
Q 004336 733 RDCRAALSVDPNDQEML 749 (760)
Q Consensus 733 ~~~~~aL~l~P~~~~~l 749 (760)
+-++-.|+++|-.++++
T Consensus 297 ~KLqFLL~~nPfP~ETF 313 (459)
T KOG4340|consen 297 EKLQFLLQQNPFPPETF 313 (459)
T ss_pred HHHHHHHhcCCCChHHH
Confidence 77777777777655543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.7e-09 Score=96.03 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=99.9
Q ss_pred HHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHH
Q 004336 467 MLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 545 (760)
Q Consensus 467 al~~~-p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~ 545 (760)
..... ++.-+..|.+|..+...|++++|...|+-+...+|.+.+.|++||.++..+|++++|+..|.+++.++|++
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd--- 102 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA--- 102 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence 34455 67788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 546 ~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
+..+.++|.+++..|+.+.|.+.|+.++...
T Consensus 103 -------------------------------------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 103 -------------------------------------PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -------------------------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999998853
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.7e-08 Score=93.63 Aligned_cols=221 Identities=16% Similarity=0.103 Sum_probs=164.3
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
.-.+|..++..|..|-..|-+.-|.-.|.+++.+.|+.+ ++++.+|..+...|+++.|...+
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~------~vfNyLG~Yl~~a~~fdaa~eaF------------ 122 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP------EVFNYLGIYLTQAGNFDAAYEAF------------ 122 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH------HHHHHHHHHHHhcccchHHHHHh------------
Confidence 456788888888888888899999999999999999997 99999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH-HHHHHh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK-AEESIQ 537 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~-~~~al~ 537 (760)
...++++|....+..+.|..+.--|++.-|.+.+.+..+.+|+++-.-..|-.. ...-+..+|... .+++..
T Consensus 123 ------ds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 123 ------DSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred ------hhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998554333222 233456666544 455555
Q ss_pred hcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh--cc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 538 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--LR--KGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 538 l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--l~--~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
.+.+...|......+... .+...++.+....... +. -.++++.+|..|...|+.++|...|+-|+..+
T Consensus 196 ~d~e~WG~~iV~~yLgki--------S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 196 SDKEQWGWNIVEFYLGKI--------SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred ccHhhhhHHHHHHHHhhc--------cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 554444444444444333 0001222222222211 11 17889999999999999999999999988742
Q ss_pred ------chHHHHHHHHHHHHcCCHH
Q 004336 614 ------HTRAHQGLARVHFLKNNKT 632 (760)
Q Consensus 614 ------~~~a~~~La~~~~~~g~~~ 632 (760)
+..++..|+.++..+.+..
T Consensus 268 VynfVE~RyA~~EL~~l~q~~~~l~ 292 (297)
T COG4785 268 VYNFVEHRYALLELSLLGQDQDDLA 292 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccchhh
Confidence 2256677777666554443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-06 Score=87.02 Aligned_cols=237 Identities=16% Similarity=0.113 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHH
Q 004336 367 CFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 446 (760)
Q Consensus 367 ~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l 446 (760)
.+-+.+.+..++....|..+|... .|++|++.|.++|..+|++. .....++.+|.+...++-+.+.+
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYmR~-------HYQeAIdvYkrvL~dn~ey~------alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYMRM-------HYQEAIDVYKRVLQDNPEYI------ALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHhcChhhh------hhHHHHHHHHHhcchhhhHHHHH
Confidence 344445555555666666666666 99999999999999999995 66778999999999999998888
Q ss_pred hhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------
Q 004336 447 QLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL-------------------------- 500 (760)
Q Consensus 447 ~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~k-------------------------- 500 (760)
.--++..|+...+....+-.+++.=+-..|..-.+.
T Consensus 209 ------------------~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrng 270 (557)
T KOG3785|consen 209 ------------------KVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNG 270 (557)
T ss_pred ------------------HHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCC
Confidence 666777788877777666655553222222221111
Q ss_pred --HHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHH
Q 004336 501 --ARQHAAS----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDAL 573 (760)
Q Consensus 501 --al~~~p~----~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl 573 (760)
|++.-|. -+++..+|..-|..+|+..+|+...+. ++|.. .-|...|.+....+...++. ..+.-|.
T Consensus 271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSr----eHlKiAq 343 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSR----EHLKIAQ 343 (557)
T ss_pred ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcH----HHHHHHH
Confidence 1222221 357888888889999999999888775 46766 55677777776664433332 1222222
Q ss_pred hhhHhh----cc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 574 KCPSDR----LR--KGQALNNLGSVYVDCGQLDLAADCYSNALK--IRHTRAHQGLARVHFLKNNKTTAYEEMTKL 641 (760)
Q Consensus 574 ~~~~~~----l~--~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~--~~~~~a~~~La~~~~~~g~~~~A~~~l~~a 641 (760)
+.++-. .. .......++..++-..++++-+.++...-. .+.+...+++|.++...|++.+|.+.+-++
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 222211 00 022334456666667777777766654433 344467778888888888888888777654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-07 Score=95.72 Aligned_cols=171 Identities=13% Similarity=0.058 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---KGVLYFRQSLLLLRLNCPEAAMRSLQ 499 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~Ai~~l~ 499 (760)
...++..|......|+|.+|+..+ ++.+...|. -..+.+.+|.++...|++++|+..++
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f------------------~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~ 66 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLF------------------EKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYE 66 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHH------------------HHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 477888899999999999999999 788777665 46788999999999999999999999
Q ss_pred HHHHhCCCc---HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhh
Q 004336 500 LARQHAASD---HERLVYEGWILYDT-----------SHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTV 565 (760)
Q Consensus 500 kal~~~p~~---~~a~~~Lg~i~~~~-----------g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~ 565 (760)
+.++..|++ +.+++.+|.+++.. +...+|+..|+..+...|+.
T Consensus 67 ~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S----------------------- 123 (203)
T PF13525_consen 67 RFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS----------------------- 123 (203)
T ss_dssp HHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS-----------------------
T ss_pred HHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc-----------------------
Confidence 999988875 46788888876543 34568899999999998887
Q ss_pred hhHHHHHHhhhHhhccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcCCHHHHH
Q 004336 566 VSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 566 ~~~leeAl~~~~~~l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~g~~~~A~ 635 (760)
....+|.......... +.--..+|..|.+.|.|..|+..|+.+++.-|. .++..++..|...|..+.|.
T Consensus 124 -~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 124 -EYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 2233333222222111 556667899999999999999999999996554 78999999999999987443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-08 Score=107.95 Aligned_cols=253 Identities=14% Similarity=0.026 Sum_probs=166.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcch
Q 004336 485 LLRLNCPEAAMRSLQLARQHAAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 563 (760)
Q Consensus 485 ~~~~g~~~~Ai~~l~kal~~~p~-~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~ 563 (760)
++-.|+|.+++..++ ....++. ..+....+.+.+..+|+++..+.-....- .|...+...++..+...
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~~la~y~~~~-------- 79 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAVRLLAEYLSSP-------- 79 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHHHHHHHHCTS--------
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHHHHHHHHHhCc--------
Confidence 445788888886666 2223332 34566777888888888887665443321 34446666666555442
Q ss_pred hhhhHHHHHHhhhHhhc----c--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHH
Q 004336 564 TVVSLLEDALKCPSDRL----R--KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEE 637 (760)
Q Consensus 564 ~~~~~leeAl~~~~~~l----~--~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~ 637 (760)
..-+.++......+ . ........|.++...|++++|++.+.+. ...+.......++...++++.|.+.
T Consensus 80 ---~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 80 ---SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp ---TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ---cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 11122222222221 1 1334455677788888888888877664 3346666777888889999999988
Q ss_pred HHHHHHhccC-----cHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 638 MTKLIKKARN-----NASAYEKRSEY-CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 638 l~~al~~~~~-----~~~~~~~~~~~-~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
++.+-+.+.+ .+.+|..+..- ..+.+|...|+...+..+..+..++.+|.+.+.+|++++|.+.+.+++..+|+
T Consensus 154 l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 154 LKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 8887666553 23333333222 35788999999988887888899999999999999999999999999999999
Q ss_pred cHHHHHH-HHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 712 LHLLHLR-AAFHEHTGDV-LGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 712 ~~~~~l~-a~~~~~~g~~-~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
++..... ..+...+|+. +.+.+++.+....+|+|+-+.++-.+
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~ 278 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK 278 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9977754 6666777887 66778888888899999977665443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-07 Score=95.97 Aligned_cols=174 Identities=9% Similarity=-0.056 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHH---HHHHHHHHHcCCHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY---FRQSLLLLRLNCPEAAMRSLQ 499 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~Ai~~l~ 499 (760)
...++..|......|++++|+..+ ++.+...|..+.+. +.+|.++.+.+++++|+..++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f------------------~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e 93 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQL------------------EALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAID 93 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 466778888889999999999999 99999999876554 889999999999999999999
Q ss_pred HHHHhCCCc---HHHHHHHHHHHHHCC------------------CHHHHHHHHHHHHhhcCCh----HHHHHHHHHHHc
Q 004336 500 LARQHAASD---HERLVYEGWILYDTS------------------HCEEGLRKAEESIQMKRSF----EAFFLKAYALAD 554 (760)
Q Consensus 500 kal~~~p~~---~~a~~~Lg~i~~~~g------------------~~eeAl~~~~~al~l~p~~----~a~~~la~~l~~ 554 (760)
+.++..|++ +.+++.+|.++...+ ...+|+..+++.++..|+. ++...+..+...
T Consensus 94 ~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 94 RFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 999998876 467888888764443 1357889999999999987 233333322222
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcC
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKN 629 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~g 629 (760)
. +.--...|..|.+.|.|..|+.-++.+++.-|. +++..++..|...|
T Consensus 174 l---------------------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg 226 (243)
T PRK10866 174 L---------------------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQ 226 (243)
T ss_pred H---------------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcC
Confidence 2 555567899999999999999999999995554 89999999999999
Q ss_pred CHHHHHHHHHHH
Q 004336 630 NKTTAYEEMTKL 641 (760)
Q Consensus 630 ~~~~A~~~l~~a 641 (760)
..++|.+....+
T Consensus 227 ~~~~a~~~~~~l 238 (243)
T PRK10866 227 LNAQADKVAKII 238 (243)
T ss_pred ChHHHHHHHHHH
Confidence 999998876643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-08 Score=94.04 Aligned_cols=99 Identities=8% Similarity=-0.075 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
.+..+.+|..+.+.|++++|...+ +-....+|.+...|+++|.++..+|++++|+..|.+++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f------------------~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLF------------------QLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 488999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.++|+++..++++|.++...|+.+.|.+.|+.++...
T Consensus 97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999875
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-07 Score=98.23 Aligned_cols=128 Identities=15% Similarity=0.085 Sum_probs=112.1
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
.+|....++|..+..++..|++++|+..++..+...|+|+..+...+.++...|+.++|.+.+++++..+|+.
T Consensus 301 ~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~------- 373 (484)
T COG4783 301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS------- 373 (484)
T ss_pred hCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-------
Confidence 3377888999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 627 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~ 627 (760)
.....++|..|++.|++.+|+..++..+..+|. ..|..||+.|..
T Consensus 374 ---------------------------------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 374 ---------------------------------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred ---------------------------------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 678888999999999999999999998886665 888999999999
Q ss_pred cCCHHHHHHH
Q 004336 628 KNNKTTAYEE 637 (760)
Q Consensus 628 ~g~~~~A~~~ 637 (760)
+|+..+|...
T Consensus 421 ~g~~~~a~~A 430 (484)
T COG4783 421 LGNRAEALLA 430 (484)
T ss_pred hCchHHHHHH
Confidence 9988655433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-08 Score=110.15 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=96.4
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
...|..++..|+|++|+..|++++..+|++. .++..+|.++...|++++|+..+ .+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~------~a~~~~a~~~~~~g~~~eAl~~~------------------~~ 61 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNA------ELYADRAQANIKLGNFTEAVADA------------------NK 61 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HH
Confidence 3445566666699999999999999999985 88888999999999999999888 89
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 522 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~ 522 (760)
++.++|.++.+++++|.++..+|++++|+..|+++++++|++..+...++.+....
T Consensus 62 Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 62 AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888887775544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.3e-08 Score=104.12 Aligned_cols=147 Identities=17% Similarity=0.055 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
..+++..+..+...|+++.|...+ ...+...|+|+..+-..+.++.+.|+.++|.+.+++++
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l------------------~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal 367 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLL------------------QPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKAL 367 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 388999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 581 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~ 581 (760)
...|+....++++|.+|...|++.+|+..+++.+..+|++ ..|..++.++..+ |..
T Consensus 368 ~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~-----------g~~------------ 424 (484)
T COG4783 368 ALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL-----------GNR------------ 424 (484)
T ss_pred hcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh-----------Cch------------
Confidence 9999999999999999999999999999999999999999 7777777777776 222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 582 KGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 582 ~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
..+....+..|...|++++|+..+..+.+
T Consensus 425 -~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 425 -AEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34455566777777777777777777665
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-08 Score=108.42 Aligned_cols=112 Identities=12% Similarity=-0.014 Sum_probs=103.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004336 426 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 505 (760)
Q Consensus 426 ~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~ 505 (760)
+...|..+...|++++|+..+ .+++..+|+++.+++.+|.+|...|++++|+..+++++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~------------------~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLY------------------TQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 445678888999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcc
Q 004336 506 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 555 (760)
Q Consensus 506 p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~ 555 (760)
|+++.+++.+|.+++.+|++++|+..|++++.++|++ .+...++.+....
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 7777776664443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.3e-05 Score=84.56 Aligned_cols=371 Identities=14% Similarity=0.071 Sum_probs=229.1
Q ss_pred cCCCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhch--HHHHHHHHHHHHH
Q 004336 358 LDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGR--VAASQLHMLVREH 435 (760)
Q Consensus 358 ~~~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~--~~a~~~lg~l~~~ 435 (760)
..+-++.+...+.+.+.......+.-.. .+...+++++|.+.+..++..+.... ..++ ...|..+..+..+
T Consensus 150 ~~~lPets~rvyrRYLk~~P~~~eeyie------~L~~~d~~~eaa~~la~vln~d~f~s-k~gkSn~qlw~elcdlis~ 222 (835)
T KOG2047|consen 150 SHGLPETSIRVYRRYLKVAPEAREEYIE------YLAKSDRLDEAAQRLATVLNQDEFVS-KKGKSNHQLWLELCDLISQ 222 (835)
T ss_pred hCCChHHHHHHHHHHHhcCHHHHHHHHH------HHHhccchHHHHHHHHHhcCchhhhh-hcccchhhHHHHHHHHHHh
Confidence 4445567777888877765544333222 23345699999999998886543221 1111 1223333333322
Q ss_pred ccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHH
Q 004336 436 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHER 511 (760)
Q Consensus 436 ~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~---~~~a 511 (760)
.-+.-.. ..--+.++..+...++. +.+|..||..|.+.|.+++|...|++++..--. ...+
T Consensus 223 ~p~~~~s---------------lnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~i 287 (835)
T KOG2047|consen 223 NPDKVQS---------------LNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQI 287 (835)
T ss_pred Ccchhcc---------------cCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHH
Confidence 2111111 11112347777777765 678999999999999999999999999875322 1111
Q ss_pred H-----HHHHHHHHHC-------------CCHHHHHHHHHHHHhhcC------------Ch-HHHHHHHHHHHcccCCCC
Q 004336 512 L-----VYEGWILYDT-------------SHCEEGLRKAEESIQMKR------------SF-EAFFLKAYALADSSQDSS 560 (760)
Q Consensus 512 ~-----~~Lg~i~~~~-------------g~~eeAl~~~~~al~l~p------------~~-~a~~~la~~l~~~~~~~~ 560 (760)
+ +.-..+...+ -+.+-.+..|+..+...| ++ +.|.....++..
T Consensus 288 fd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~------ 361 (835)
T KOG2047|consen 288 FDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEG------ 361 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcC------
Confidence 1 1111111111 234555666777665443 33 333333222222
Q ss_pred cchhhhhHHHHHHhhhHhh---ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch------HHHHHHHHHHHHcCCH
Q 004336 561 CSSTVVSLLEDALKCPSDR---LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNK 631 (760)
Q Consensus 561 ~~~~~~~~leeAl~~~~~~---l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~------~a~~~La~~~~~~g~~ 631 (760)
.....+.-+.+|++...-. -.+...|...|..|...|+.+.|...|+++.+.... .+|..-|..-.+..++
T Consensus 362 ~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~ 441 (835)
T KOG2047|consen 362 NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENF 441 (835)
T ss_pred ChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhH
Confidence 2233334444444332211 112788999999999999999999999999985332 6888889989999999
Q ss_pred HHHHHHHHHHHHhccC------------cHHHHHHH----------HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 004336 632 TTAYEEMTKLIKKARN------------NASAYEKR----------SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVL 689 (760)
Q Consensus 632 ~~A~~~l~~al~~~~~------------~~~~~~~~----------~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~ 689 (760)
+.|...++++...-.+ ...++..+ ..+|-++.....|++.+.+.--.|....+.|..+
T Consensus 442 ~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfL 521 (835)
T KOG2047|consen 442 EAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFL 521 (835)
T ss_pred HHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999987643221 11111111 1246777778889999999888889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcH--HHH---HH-HHHHHHcCCHHHHHHHHHHHHhcCCC-cHHH-HHHHHHhh
Q 004336 690 MDSHKENEAIAELSRAIAFKADLH--LLH---LR-AAFHEHTGDVLGALRDCRAALSVDPN-DQEM-LELHSRVY 756 (760)
Q Consensus 690 ~~~g~~~eAi~~l~kal~~~p~~~--~~~---l~-a~~~~~~g~~~~A~~~~~~aL~l~P~-~~~~-l~~~~r~~ 756 (760)
....-+++|...|++.+.+.+-.. .+| +- ..-...--..+.|...|+++|+..|. +... .-+|+++.
T Consensus 522 Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 522 EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999999999998876544 444 22 22222325688999999999997762 3222 23455544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.6e-06 Score=86.21 Aligned_cols=260 Identities=13% Similarity=0.052 Sum_probs=187.4
Q ss_pred HHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004336 428 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 507 (760)
Q Consensus 428 ~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~ 507 (760)
.-|......|+|.+|...+ .+.-+..+.-...+..-+.+-.+.|+++.|-.++.++-+..++
T Consensus 89 ~egl~~l~eG~~~qAEkl~------------------~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~ 150 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLL------------------RRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD 150 (400)
T ss_pred HHHHHHHhcCcHHHHHHHH------------------HHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC
Confidence 3455566788999999888 6655555555666666777889999999999999999988544
Q ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHH
Q 004336 508 -DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQAL 586 (760)
Q Consensus 508 -~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~ 586 (760)
...+....+.++...|+++.|.....++++..|.+ ..++
T Consensus 151 ~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~----------------------------------------~~vl 190 (400)
T COG3071 151 DTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH----------------------------------------PEVL 190 (400)
T ss_pred chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC----------------------------------------hHHH
Confidence 45677888999999999999999999999999999 6777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh---cch-------HHHHHHHHHHHHcCCHHHHHHHHHH---HHHhccCcHHHHH
Q 004336 587 NNLGSVYVDCGQLDLAADCYSNALKI---RHT-------RAHQGLARVHFLKNNKTTAYEEMTK---LIKKARNNASAYE 653 (760)
Q Consensus 587 ~~Lg~~y~~~g~~~eA~~~~~~Al~~---~~~-------~a~~~La~~~~~~g~~~~A~~~l~~---al~~~~~~~~~~~ 653 (760)
.....+|...|+|.+......+.-+. ++. .++.++-+=....+..+.-..+++. .++.+|+....+.
T Consensus 191 rLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a 270 (400)
T COG3071 191 RLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYA 270 (400)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHH
Confidence 77788888888888888887776652 222 2222222111111222221223333 2333344433333
Q ss_pred -HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHH
Q 004336 654 -KRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGA 731 (760)
Q Consensus 654 -~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A 731 (760)
.+...|+.++|.+..+.+++..-+.. ....+ -..+-++...=++..++.++..|+++.+++- |.++.+.+.+.+|
T Consensus 271 ~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 271 ERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence 34567999999999999998765433 22222 2345678888899999999999999988744 8888888999999
Q ss_pred HHHHHHHHhcCCCcHHH
Q 004336 732 LRDCRAALSVDPNDQEM 748 (760)
Q Consensus 732 ~~~~~~aL~l~P~~~~~ 748 (760)
..+++.+++..|+..+.
T Consensus 348 ~~~leaAl~~~~s~~~~ 364 (400)
T COG3071 348 SEALEAALKLRPSASDY 364 (400)
T ss_pred HHHHHHHHhcCCChhhH
Confidence 99999999999986653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-08 Score=82.22 Aligned_cols=68 Identities=12% Similarity=0.187 Sum_probs=65.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhcC
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-HCEEGLRKAEESIQMKR 540 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g-~~eeAl~~~~~al~l~p 540 (760)
+++..|+.+|..+...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 367899999999999999999999999999999999999999999999999 79999999999999988
|
... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-06 Score=88.99 Aligned_cols=234 Identities=13% Similarity=0.090 Sum_probs=171.1
Q ss_pred HHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 385 a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
.+...|.-++...++++|+..+.+.|..-.+. .++...+-.+..+...+|.+++++.+. +..+
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~---~~Rf~~lG~l~~a~s~~g~y~~mL~~a--------------~sqi 70 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDL---MGRFRVLGCLVTAHSEMGRYKEMLKFA--------------VSQI 70 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHH---HHHHHHhccchhhhhhhHHHHHHHHHH--------------HHHH
Confidence 34455666677779999999998888765333 244456666777788888888887765 3333
Q ss_pred HHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 465 YQMLESDA--PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-----HERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 465 ~~al~~~p--~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~-----~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.-+.+.+. -..+++.+++..+.+..++.+++.+-+-.+.+.... ..++..+|.++.-++.++++++.|+++++
T Consensus 71 ~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~ 150 (518)
T KOG1941|consen 71 DTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALR 150 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44443332 234678888888888888888888877777654322 25667788888899999999999999987
Q ss_pred hcCCh-------HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc--------H------HHHHHHHHHHHHHc
Q 004336 538 MKRSF-------EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR--------K------GQALNNLGSVYVDC 596 (760)
Q Consensus 538 l~p~~-------~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~--------~------~~a~~~Lg~~y~~~ 596 (760)
+..++ ..+..+|..+... ..+++|+-+..++.. . ..+++.++..+..+
T Consensus 151 ~A~~~~D~~LElqvcv~Lgslf~~l-----------~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~ 219 (518)
T KOG1941|consen 151 YAHNNDDAMLELQVCVSLGSLFAQL-----------KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLL 219 (518)
T ss_pred HhhccCCceeeeehhhhHHHHHHHH-----------HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHh
Confidence 63322 5667777777776 777777766665511 1 56788899999999
Q ss_pred CCHHHHHHHHHHHHhhc-----c---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 597 GQLDLAADCYSNALKIR-----H---TRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 597 g~~~eA~~~~~~Al~~~-----~---~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
|..-.|.++.+++.++. . ......+|.+|...|+.+.|..-|+++.....
T Consensus 220 G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 220 GRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred cccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 99999999999998841 1 15677889999999999999999998876654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.7e-07 Score=90.91 Aligned_cols=200 Identities=8% Similarity=-0.031 Sum_probs=121.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER---LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a---~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
.+..++..|..+...|++++|++.|++++...|..+.+ .+.+|.+++..+++++|+..+++.++..|++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~-------- 102 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH-------- 102 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC--------
Confidence 45566666776677777777777777777666665433 3666666777777777777777777666666
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 630 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~ 630 (760)
. ....+++.+|.++...++- .+..-..+++ .......
T Consensus 103 ----------------~-------------~~~~a~Y~~g~~~~~~~~~-----~~~~~~~~~~---------~~rD~~~ 139 (243)
T PRK10866 103 ----------------P-------------NIDYVLYMRGLTNMALDDS-----ALQGFFGVDR---------SDRDPQH 139 (243)
T ss_pred ----------------C-------------chHHHHHHHHHhhhhcchh-----hhhhccCCCc---------cccCHHH
Confidence 0 0045555555554332210 0111000000 0001122
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 004336 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 631 ~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p 710 (760)
..+|+..+++.++..|+....-..... +..++. ....--...|..|.+.|++..|+.-++.++...|
T Consensus 140 ~~~A~~~~~~li~~yP~S~ya~~A~~r-------l~~l~~------~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp 206 (243)
T PRK10866 140 ARAAFRDFSKLVRGYPNSQYTTDATKR-------LVFLKD------RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYP 206 (243)
T ss_pred HHHHHHHHHHHHHHCcCChhHHHHHHH-------HHHHHH------HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCC
Confidence 356788889999999976554433310 111111 1122234678899999999999999999999999
Q ss_pred CcHHH----HHHHHHHHHcCCHHHHHHHHHH
Q 004336 711 DLHLL----HLRAAFHEHTGDVLGALRDCRA 737 (760)
Q Consensus 711 ~~~~~----~l~a~~~~~~g~~~~A~~~~~~ 737 (760)
+.+.. .+....|..+|..++|......
T Consensus 207 ~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 207 DTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred CCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 87633 3558888888999999886654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-07 Score=106.87 Aligned_cols=144 Identities=13% Similarity=0.064 Sum_probs=112.3
Q ss_pred HHHHHHHhhhHHHhcCC---HHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHH----HHHHHhhhccccc
Q 004336 382 RLLAFHQLGCVRLLRKE---YDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI----ADCWLQLYDRWSS 454 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~---~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~----A~~~l~l~~~~~~ 454 (760)
.|..++..|.-++.+++ +..|+.+|+++++++|++. .++-.++.++.....+.. .+.-.
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a------~a~A~la~~~~~~~~~~~~~~~~l~~a-------- 403 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT------YAQAEKALADIVRHSQQPLDEKQLAAL-------- 403 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHhcCCccHHHHHHH--------
Confidence 45566777777776554 8899999999999999996 777777776644322211 01001
Q ss_pred cCCcCcHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 004336 455 VDDIGSLSVIYQMLE--SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 532 (760)
Q Consensus 455 ~~d~~sl~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~ 532 (760)
.....+++. .+|.++.++..+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|+..|
T Consensus 404 ------~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 404 ------STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred ------HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 112255555 3677888999999999999999999999999999999 4889999999999999999999999
Q ss_pred HHHHhhcCChHHHH
Q 004336 533 EESIQMKRSFEAFF 546 (760)
Q Consensus 533 ~~al~l~p~~~a~~ 546 (760)
++|+.++|.++.|+
T Consensus 477 ~~A~~L~P~~pt~~ 490 (517)
T PRK10153 477 STAFNLRPGENTLY 490 (517)
T ss_pred HHHHhcCCCCchHH
Confidence 99999999984443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-07 Score=91.24 Aligned_cols=188 Identities=20% Similarity=0.127 Sum_probs=117.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
.+..++..|..++..|++.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~-------- 75 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS-------- 75 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------
Confidence 45667777777777777777777777777776643 4667777777777777777777777777777766
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNN 630 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~ 630 (760)
.. ...+++.+|.+++... ...+ ......+.
T Consensus 76 ----------------~~-------------~~~A~Y~~g~~~~~~~---------~~~~------------~~~~D~~~ 105 (203)
T PF13525_consen 76 ----------------PK-------------ADYALYMLGLSYYKQI---------PGIL------------RSDRDQTS 105 (203)
T ss_dssp ----------------TT-------------HHHHHHHHHHHHHHHH---------HHHH-------------TT---HH
T ss_pred ----------------cc-------------hhhHHHHHHHHHHHhC---------ccch------------hcccChHH
Confidence 00 0456666666554430 0000 11233445
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 004336 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 631 ~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p 710 (760)
..+|+..++..+...|+...+-.... -+..++..+ ..--...|..|.+.|++..|+..++.+++..|
T Consensus 106 ~~~A~~~~~~li~~yP~S~y~~~A~~-------~l~~l~~~l------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 106 TRKAIEEFEELIKRYPNSEYAEEAKK-------RLAELRNRL------AEHELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHH-------HHHHHHHHH------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHCcCchHHHHHHH-------HHHHHHHHH------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 66889999999999997654443321 111111111 12335679999999999999999999999999
Q ss_pred CcHHHH----HHHHHHHHcCCHHHHH
Q 004336 711 DLHLLH----LRAAFHEHTGDVLGAL 732 (760)
Q Consensus 711 ~~~~~~----l~a~~~~~~g~~~~A~ 732 (760)
+..... +....+.++|..+.|.
T Consensus 173 ~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 173 DTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCChHHHH
Confidence 987443 5588888889888544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.3e-07 Score=95.43 Aligned_cols=172 Identities=17% Similarity=0.121 Sum_probs=114.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH
Q 004336 516 GWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD 595 (760)
Q Consensus 516 g~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~ 595 (760)
|..|...|++++|...|.++....-.. +....| +..+...+.+|.+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~------------------------~~~~~A----------a~~~~~Aa~~~k~ 87 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKL------------------------GDKFEA----------AKAYEEAANCYKK 87 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHT------------------------T-HHHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHc------------------------CCHHHH----------HHHHHHHHHHHHh
Confidence 667777888888888887776432111 111111 4566666777665
Q ss_pred cCCHHHHHHHHHHHHhh----c-ch---HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHH
Q 004336 596 CGQLDLAADCYSNALKI----R-HT---RAHQGLARVHFLK-NNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRA 666 (760)
Q Consensus 596 ~g~~~eA~~~~~~Al~~----~-~~---~a~~~La~~~~~~-g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~ 666 (760)
. ++++|+.+|++|+.+ + +. ..+..+|.+|... |++++|++.|+++++.....+.....
T Consensus 88 ~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a------------ 154 (282)
T PF14938_consen 88 G-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA------------ 154 (282)
T ss_dssp T-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH------------
T ss_pred h-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH------------
Confidence 5 888888888888873 1 11 5677788888888 88888888888887766533221111
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-------HHHHH-HHHHHHcCCHHHHHHHHHHH
Q 004336 667 DLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH-------LLHLR-AAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 667 ~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~-------~~~l~-a~~~~~~g~~~~A~~~~~~a 738 (760)
...+..+|.++...|+|++|++.|+++....-++. ...+. ..++...||+..|...+++.
T Consensus 155 ------------~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 155 ------------AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp ------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 13456779999999999999999999987543221 22244 66888889999999999999
Q ss_pred HhcCCCcH
Q 004336 739 LSVDPNDQ 746 (760)
Q Consensus 739 L~l~P~~~ 746 (760)
...+|...
T Consensus 223 ~~~~~~F~ 230 (282)
T PF14938_consen 223 CSQDPSFA 230 (282)
T ss_dssp GTTSTTST
T ss_pred HhhCCCCC
Confidence 99988543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.4e-07 Score=89.77 Aligned_cols=268 Identities=16% Similarity=0.089 Sum_probs=161.4
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
...+|.+|++++..-.+.+|.+. .++..+|.+|...+++..|...+ ++.-.+.|..
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~r------AgLSlLgyCYY~~Q~f~~AA~CY------------------eQL~ql~P~~ 77 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSR------AGLSLLGYCYYRLQEFALAAECY------------------EQLGQLHPEL 77 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccch------HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhhChHH
Confidence 44588888888888888888775 78888999999988888888888 8888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC-h--HHHHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS-F--EAFFLKAYA 551 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~-~--~a~~~la~~ 551 (760)
....+..+..+.+.+.+.+|++..........-.......-+.+.+..+++..+....++. |. + +...+.|-+
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----p~en~Ad~~in~gCl 153 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----PSENEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhc----cCCCccchhccchhe
Confidence 8888888888888888888887765543321111122333344445555555444333332 21 1 333334444
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cc----------
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALKI---RH---------- 614 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~---~~---------- 614 (760)
+... ++++.|.+.|+.+++- +-.-++++.+++..|+++.|+++..+.++. +|
T Consensus 154 lyke-----------gqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 154 LYKE-----------GQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred eecc-----------ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 4333 5555555555555332 445566777777777777777777666541 00
Q ss_pred ---------h---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--CcHHHHHHHH---hcCCHHHHHHHHHHH
Q 004336 615 ---------T---------RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR--NNASAYEKRS---EYCDRELTRADLEMV 671 (760)
Q Consensus 615 ---------~---------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~--~~~~~~~~~~---~~~~~~~A~~~l~ka 671 (760)
+ .+++..+.++++.|+++.|.+.+...-.... -++.....++ .-+++-+....+.-.
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFL 302 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHH
Confidence 0 3455556777788888777766654321111 0111111111 123444555556666
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004336 672 TQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 672 l~l~p~~~~~~~~La~~~~~~g~~~eAi~~ 701 (760)
++++|--.+.+.++-.+|.+..-++-|.+.
T Consensus 303 L~~nPfP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 303 LQQNPFPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred HhcCCCChHHHHHHHHHHhhhHHHhHHHHH
Confidence 777776666666666666666666655543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.0001 Score=81.69 Aligned_cols=257 Identities=10% Similarity=-0.019 Sum_probs=177.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC-------
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS------- 541 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~----~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~------- 541 (760)
.-..+|...|..|...|+.+.|...|+++.+.+-. -+.+|...|..-....+++.|+...+++...-..
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 34678899999999999999999999999887532 2577888888888999999999999998764211
Q ss_pred -----------h-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHH
Q 004336 542 -----------F-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADC 605 (760)
Q Consensus 542 -----------~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~ 605 (760)
. ..|..++...... |.++.....|.+.++- ++...|.|..+....-+++|.+.
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~-----------gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESL-----------GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKA 533 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 0 2344455555554 7888888888888433 88889999999999999999999
Q ss_pred HHHHHhhcch----HHHHHH---HHHHHHcCCHHHHHHHHHHHHHhccCcH--HHHHHHH----hcCCHHHHHHHHHHHH
Q 004336 606 YSNALKIRHT----RAHQGL---ARVHFLKNNKTTAYEEMTKLIKKARNNA--SAYEKRS----EYCDRELTRADLEMVT 672 (760)
Q Consensus 606 ~~~Al~~~~~----~a~~~L---a~~~~~~g~~~~A~~~l~~al~~~~~~~--~~~~~~~----~~~~~~~A~~~l~kal 672 (760)
|++.+.+-+. +.|... ..--+..-+.+.|..+|+++++..|... .+|...+ ..|-...|+..|++|.
T Consensus 534 YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 534 YERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999885332 444332 2223334578889999999999888322 2222221 3466778888888876
Q ss_pred hhCCC-ChHHHHHH--HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH--HH-HHHHHHcCCHHHHHHHHHHHHhc
Q 004336 673 QLDPL-RVYPYRYR--AAVLMDSHKENEAIAELSRAIAFKADLHLLH--LR-AAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 673 ~l~p~-~~~~~~~L--a~~~~~~g~~~eAi~~l~kal~~~p~~~~~~--l~-a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
..-+. +-...+++ ..+-.--| ...-.+.|++|++.-|+..... ++ +.+-.+.|..+.|...|.-.-++
T Consensus 614 ~~v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 614 SAVKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 54332 21111111 11111112 3345678889998888877554 55 77778889999999988877654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-07 Score=91.01 Aligned_cols=82 Identities=12% Similarity=0.034 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 549 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~---~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la 549 (760)
....++.+|.++...|++++|+..|++++.+.|+ .+.++.++|.++...|++++|+..+++++.++|.. ..+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3677899999999999999999999999988765 34589999999999999999999999999999998 6666665
Q ss_pred HHHHcc
Q 004336 550 YALADS 555 (760)
Q Consensus 550 ~~l~~~ 555 (760)
.++...
T Consensus 114 ~i~~~~ 119 (168)
T CHL00033 114 VICHYR 119 (168)
T ss_pred HHHHHh
Confidence 555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=99.32 Aligned_cols=132 Identities=16% Similarity=0.068 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHH--HHcC--CHHHHHHHHHHHHHhccCcHHHHHHH----H
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVH--FLKN--NKTTAYEEMTKLIKKARNNASAYEKR----S 656 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~--~~~g--~~~~A~~~l~~al~~~~~~~~~~~~~----~ 656 (760)
.....-.+|...++++.|.+.++.+-+.+.+.....++..+ ...| ++.+|...|+.+.+..+....+.+.. .
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 33334556666666677766666666655554444444433 3333 46666666666655555444444332 2
Q ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHH
Q 004336 657 EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE-NEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 657 ~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~-~eAi~~l~kal~~~p~~~~~~ 716 (760)
..|++++|...+.+++..+|+++.++.+++.+....|+. +.+.+++.+.....|+++.+.
T Consensus 213 ~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 346778888888888888999999999999999999988 566778888888899887553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.4e-06 Score=87.27 Aligned_cols=264 Identities=17% Similarity=0.125 Sum_probs=181.6
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 390 GCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 390 G~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
..+...+|.|++++..--..+....+..+.....+++..++..+....++.+++.+- ...+.
T Consensus 50 ~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~------------------k~~l~ 111 (518)
T KOG1941|consen 50 VTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYC------------------KTCLG 111 (518)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH------------------HHHhc
Confidence 334445558888776655444433222222233578888999998888888888876 33333
Q ss_pred hC---C--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 470 SD---A--PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 470 ~~---p--~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~------~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.. | .-......+|+++..++.++++++.|++|++...++. .++..||.++-...++++|+-+..++.++
T Consensus 112 lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 112 LPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred CCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 32 1 2235667799999999999999999999998754432 46788999999999999999999999886
Q ss_pred cCCh-----------HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc--------H--HHHHHHHHHHHHHcC
Q 004336 539 KRSF-----------EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR--------K--GQALNNLGSVYVDCG 597 (760)
Q Consensus 539 ~p~~-----------~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~--------~--~~a~~~Lg~~y~~~g 597 (760)
-.+. .+.+.++..+..+ |.+-+|.++.+++.+ . +....-+|.+|...|
T Consensus 192 v~s~~l~d~~~kyr~~~lyhmaValR~~-----------G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~g 260 (518)
T KOG1941|consen 192 VNSYGLKDWSLKYRAMSLYHMAVALRLL-----------GRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRG 260 (518)
T ss_pred HHhcCcCchhHHHHHHHHHHHHHHHHHh-----------cccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcc
Confidence 4322 3556677777776 777777776666622 1 566777899999999
Q ss_pred CHHHHHHHHHHHHhh----c----chHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHhccCcHHHHHHHHhcCCHHHH
Q 004336 598 QLDLAADCYSNALKI----R----HTRAHQGLARVHFLKNNKTT-----AYEEMTKLIKKARNNASAYEKRSEYCDRELT 664 (760)
Q Consensus 598 ~~~eA~~~~~~Al~~----~----~~~a~~~La~~~~~~g~~~~-----A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A 664 (760)
+.+.|..-|++|... + ...++.+.|++.....-..+ |++.-+++++.....+.-...+
T Consensus 261 d~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vl--------- 331 (518)
T KOG1941|consen 261 DLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVL--------- 331 (518)
T ss_pred cHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHH---------
Confidence 999999999999873 1 12566666766665544444 6666666666655443322222
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 665 RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 706 (760)
Q Consensus 665 ~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal 706 (760)
..+..++.+|...|.-++-.+.+.++-
T Consensus 332 ---------------K~hcrla~iYrs~gl~d~~~~h~~ra~ 358 (518)
T KOG1941|consen 332 ---------------KLHCRLASIYRSKGLQDELRAHVVRAH 358 (518)
T ss_pred ---------------HHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 345667778878877777666666654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=80.46 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 425 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 425 a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
+++.+|..+...|++++|..++ .+++...|.+..+++.+|.++...|++++|++.+++++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYY------------------EKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHH------------------HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4677899999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 505 ~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.|.+...+..+|.++...|++++|...+++++...|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 64 DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999988764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-07 Score=83.81 Aligned_cols=104 Identities=15% Similarity=0.092 Sum_probs=54.1
Q ss_pred HHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 385 a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
.++..|..++..|++++|+..|++++..+|+++. ...+++.+|.++...|+++.|..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~------------------ 62 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY---APNAHYWLGEAYYAQGKYADAAKAF------------------ 62 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHHHHHHHHHHHHhhccHHHHHHHH------------------
Confidence 3455555555566666666666666666655420 0134444555555555555555555
Q ss_pred HHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 004336 465 YQMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 509 (760)
Q Consensus 465 ~~al~~~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~ 509 (760)
++++...|++ +.+++.+|.++...|++++|+..++++++..|++.
T Consensus 63 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 63 LAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 4444444442 34455555555555555555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-07 Score=83.91 Aligned_cols=101 Identities=10% Similarity=-0.029 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQL 500 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~k 500 (760)
..++.+|..+...|++++|...+ .+++..+|++ ..+++.+|.++...|++++|+..|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAF------------------QAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 67888999999999999999999 9999888876 57899999999999999999999999
Q ss_pred HHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 501 ARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 501 al~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
++...|++ +.++..+|.++...|++++|+..+++++...|++
T Consensus 65 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 65 VVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 99998875 6789999999999999999999999999999988
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=80.09 Aligned_cols=98 Identities=19% Similarity=0.280 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHccc
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 556 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~ 556 (760)
+++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-------------- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--------------
Confidence 467889999999999999999999999999988899999999999999999999999999888877
Q ss_pred CCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 557 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 557 ~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
..++..+|.++...|++++|...+.++++..|
T Consensus 68 --------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 68 --------------------------AKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred --------------------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 46777788888888888888888888877654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.2e-07 Score=85.78 Aligned_cols=195 Identities=15% Similarity=0.088 Sum_probs=132.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 553 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~ 553 (760)
.+..++..|..|-..|-+.-|.-.|.+++.+.|+.++++++||.-+...|+++.|.+.|...++++|.+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y----------- 132 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----------- 132 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-----------
Confidence 456788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHH-HHHHHcCCHH
Q 004336 554 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLA-RVHFLKNNKT 632 (760)
Q Consensus 554 ~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La-~~~~~~g~~~ 632 (760)
.-+..|.|..++--|+|.-|.+-+.+-..-+|.+.+..|= .+-...-++.
T Consensus 133 -----------------------------~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~ 183 (297)
T COG4785 133 -----------------------------NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPK 183 (297)
T ss_pred -----------------------------hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHH
Confidence 4566666777777777777777777766655542211111 1122344566
Q ss_pred HHHHHHHHHHHhccC--cHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 633 TAYEEMTKLIKKARN--NASAYEKRSEYCDRELTRADLEMVTQLDPL-------RVYPYRYRAAVLMDSHKENEAIAELS 703 (760)
Q Consensus 633 ~A~~~l~~al~~~~~--~~~~~~~~~~~~~~~~A~~~l~kal~l~p~-------~~~~~~~La~~~~~~g~~~eAi~~l~ 703 (760)
+|...+.+-.+.... .++..... -.|+.. -...++++.+-..+ .+++|+++|..+...|+.++|...|+
T Consensus 184 ~A~tnL~qR~~~~d~e~WG~~iV~~-yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 184 QAKTNLKQRAEKSDKEQWGWNIVEF-YLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHH-HHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 665554443332221 12211111 011111 01112222222111 24678999999999999999999999
Q ss_pred HHHHcCC
Q 004336 704 RAIAFKA 710 (760)
Q Consensus 704 kal~~~p 710 (760)
-++..+-
T Consensus 262 LaiannV 268 (297)
T COG4785 262 LAVANNV 268 (297)
T ss_pred HHHHHhH
Confidence 9987653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.1e-07 Score=88.14 Aligned_cols=123 Identities=13% Similarity=0.057 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+..++.+|..+...|++++|+.+|+++++..|+... ...++..+|.++...|++++|+.++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~------------ 95 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYY------------ 95 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHcCCHHHHHHHH------------
Confidence 4567778888888888888888888888888888776641 2356777777887888888887777
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.+++...|.+...+..+|.++...|+...|...+++++. .+++|++.+++++..
T Consensus 96 ------~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 96 ------HQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRL 149 (172)
T ss_pred ------HHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhh
Confidence 777777777777777777777777777766665555542 268888999999998
Q ss_pred cCCh
Q 004336 539 KRSF 542 (760)
Q Consensus 539 ~p~~ 542 (760)
+|++
T Consensus 150 ~p~~ 153 (172)
T PRK02603 150 APNN 153 (172)
T ss_pred Cchh
Confidence 8887
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.5e-07 Score=89.35 Aligned_cols=84 Identities=13% Similarity=0.109 Sum_probs=71.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFL 547 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~ 547 (760)
+..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|++ .++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4667789999999999999999999999999887653 4689999999999999999999999999999998 55555
Q ss_pred HHHHHHcc
Q 004336 548 KAYALADS 555 (760)
Q Consensus 548 la~~l~~~ 555 (760)
+|.++...
T Consensus 112 lg~~~~~~ 119 (172)
T PRK02603 112 IAVIYHKR 119 (172)
T ss_pred HHHHHHHc
Confidence 55544443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.3e-07 Score=84.04 Aligned_cols=132 Identities=15% Similarity=0.062 Sum_probs=108.7
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+...|......+..++...+...++.++...|+.+. ...+...+|.++...|++++|...+
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y---a~~A~l~lA~~~~~~g~~~~A~~~l---------------- 71 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY---AALAALQLAKAAYEQGDYDEAKAAL---------------- 71 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH---HHHHHHHHHHHHHHCCCHHHHHHHH----------------
Confidence 444444444455677999999999999999998841 1367788999999999999999999
Q ss_pred HHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 463 VIYQMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 463 ~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
+.++...|+. ..+.+++|.++...|++++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 72 --~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 72 --EKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred --HHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8888877655 46888999999999999999999976 34445567788899999999999999999999874
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6e-07 Score=97.35 Aligned_cols=132 Identities=11% Similarity=0.045 Sum_probs=111.8
Q ss_pred HHhhhHHHhcC---CHHHHHHHHHHHH---hhCCCCcchhchHHHHHHHHHHHHHc---c------CHHHHHHHHhhhcc
Q 004336 387 HQLGCVRLLRK---EYDEAEHLFEAIL---TLSPDYRMFEGRVAASQLHMLVREHI---D------NWTIADCWLQLYDR 451 (760)
Q Consensus 387 ~~lG~~~l~~g---~~~eA~~~~~~aL---~l~P~~~~~~~~~~a~~~lg~l~~~~---g------~~~~A~~~l~l~~~ 451 (760)
+..|...+.++ ..+.|..+|.+++ .++|++. .++-.++.++... | ...+|.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a------~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~------- 325 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT------ECYCLLAECHMSLALHGKSELELAAQKALE------- 325 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH------HHHHHHHHHHHHHHHhcCCCchHHHHHHHH-------
Confidence 45555444433 5678999999999 9999995 8888888777543 1 1123333
Q ss_pred ccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 004336 452 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 531 (760)
Q Consensus 452 ~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~ 531 (760)
...++++++|.|+.++..+|.++.-.++++.|+..|++|+.++|+.+.+++..|++....|+.++|...
T Consensus 326 -----------~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 326 -----------LLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred -----------HHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 349999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCh
Q 004336 532 AEESIQMKRSF 542 (760)
Q Consensus 532 ~~~al~l~p~~ 542 (760)
++++++++|.-
T Consensus 395 i~~alrLsP~~ 405 (458)
T PRK11906 395 IDKSLQLEPRR 405 (458)
T ss_pred HHHHhccCchh
Confidence 99999999987
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.8e-07 Score=88.64 Aligned_cols=101 Identities=9% Similarity=0.009 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---KGVLYFRQSLLLLRLNCPEAAMRSLQL 500 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~Ai~~l~k 500 (760)
..++.+|.++...|++++|+.++ .+++...|+ .+.+++++|.++...|++++|+..+++
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~------------------~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNY------------------YEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555 555544333 234566666666666666666666666
Q ss_pred HHHhCCCcHHHHHHHHHHHH-------HCCCHH-------HHHHHHHHHHhhcCCh
Q 004336 501 ARQHAASDHERLVYEGWILY-------DTSHCE-------EGLRKAEESIQMKRSF 542 (760)
Q Consensus 501 al~~~p~~~~a~~~Lg~i~~-------~~g~~e-------eAl~~~~~al~l~p~~ 542 (760)
++.+.|.....+.++|.++. ..|+++ +|+..|++++..+|..
T Consensus 98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 66666666666666666666 555655 5555556666667754
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.6e-07 Score=93.64 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=93.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhcC
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS---HCEEGLRKAEESIQMKR 540 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g---~~eeAl~~~~~al~l~p 540 (760)
++..+..+|++++-|..||.+|+.+|++..|...|++++++.|++++++..+|.+++.+. ...++...+++++..+|
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 477788888888889899999999999999999999998888888888888888877543 45688888888888888
Q ss_pred ChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 541 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 541 ~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
++ ..+...||..++..|+|.+|+..++..++..|+
T Consensus 225 ~~----------------------------------------iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 225 AN----------------------------------------IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred cc----------------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 88 677778888888888888888888888886554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.2e-07 Score=93.98 Aligned_cols=211 Identities=14% Similarity=0.094 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAA--S----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p--~----~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
.+..-|..|...|++++|.+.|.++....- + -...+...+.++... ++++|+..|++++.+.-..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-------- 107 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-------- 107 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--------
Confidence 335568889999999999999999876531 1 123455556666555 8888888888887542222
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh----cch----HHHHHH
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-GQLDLAADCYSNALKI----RHT----RAHQGL 621 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~-g~~~eA~~~~~~Al~~----~~~----~a~~~L 621 (760)
|.+..| +..+..+|.+|... |++++|+++|++|++. +.. ..+..+
T Consensus 108 ----------------G~~~~a----------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 108 ----------------GRFSQA----------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp ----------------T-HHHH----------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ----------------CcHHHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 333333 67888999999999 9999999999999984 211 678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNAS-AYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~-~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~ 700 (760)
|.++...|+|++|++.|+++....-++.. -+... ..+...+.++...|+...|..
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~------------------------~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK------------------------EYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH------------------------HHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH------------------------HHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999988775432110 01111 223455778889999999999
Q ss_pred HHHHHHHcCCCcH---HHHHH---HHHHHH--cCCHHHHHHHHHHHHhcCCCcH
Q 004336 701 ELSRAIAFKADLH---LLHLR---AAFHEH--TGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 701 ~l~kal~~~p~~~---~~~l~---a~~~~~--~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
.+++.....|... ...+. -..+.. ...+.+|+..|.+.-.+||=..
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~ 271 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKT 271 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHH
Confidence 9999998887543 22222 222222 2457788888887766665333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.6e-08 Score=76.87 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 479 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 479 ~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+.+|..+...|++++|+..|+++++.+|+++++++.+|.++..+|++++|+..|+++++.+|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.8e-07 Score=95.80 Aligned_cols=142 Identities=15% Similarity=0.041 Sum_probs=107.4
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcch---------hchHHHHHHHHHHHHHccCHHHHHHHHhhhc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMF---------EGRVAASQLHMLVREHIDNWTIADCWLQLYD 450 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~---------~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~ 450 (760)
...|.-...-|+.+++.|+|..|...|++++..-+....+ ..+..++.+++.++.+++.|.+|+.+.
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c---- 280 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESC---- 280 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH----
Confidence 3445556677888888889999999999988765432211 122356777888888888888888888
Q ss_pred cccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH-H
Q 004336 451 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-L 529 (760)
Q Consensus 451 ~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeA-l 529 (760)
.++|..+|+|..++|+.|.++...|+++.|+..|++++++.|+|..+...+..+......+.+. .
T Consensus 281 --------------~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kek 346 (397)
T KOG0543|consen 281 --------------NKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEK 346 (397)
T ss_pred --------------HHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888777777666555544 5
Q ss_pred HHHHHHHhhc
Q 004336 530 RKAEESIQMK 539 (760)
Q Consensus 530 ~~~~~al~l~ 539 (760)
+.|.+++...
T Consensus 347 k~y~~mF~k~ 356 (397)
T KOG0543|consen 347 KMYANMFAKL 356 (397)
T ss_pred HHHHHHhhcc
Confidence 6677666543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-06 Score=81.96 Aligned_cols=125 Identities=17% Similarity=0.109 Sum_probs=89.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccC
Q 004336 481 QSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 557 (760)
Q Consensus 481 la~~~~~~g~~~~Ai~~l~kal~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~ 557 (760)
........++...+...+++.++..|+. ..+.+.+|.+++..|++++|+..|++++...|+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l------------- 83 (145)
T PF09976_consen 17 QALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL------------- 83 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH-------------
Confidence 3334446888888888888888888887 456777889999999999999999999887655400
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCCHHHHHH
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYE 636 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La~~~~~~g~~~~A~~ 636 (760)
...+...++.++...|++++|+..++........ .++..+|.+|...|++++|+.
T Consensus 84 ------------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 84 ------------------------KPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred ------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 0345666777777888888888777553221111 566677888888888888888
Q ss_pred HHHHHH
Q 004336 637 EMTKLI 642 (760)
Q Consensus 637 ~l~~al 642 (760)
.|++++
T Consensus 140 ~y~~Al 145 (145)
T PF09976_consen 140 AYQKAL 145 (145)
T ss_pred HHHHhC
Confidence 777653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-06 Score=90.22 Aligned_cols=121 Identities=11% Similarity=-0.013 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
..++-+.-++.-|..+|++. +.|..||.+|...|++..|...| .+++++.|++++.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~------egW~~Lg~~ym~~~~~~~A~~AY------------------~~A~rL~g~n~~~ 192 (287)
T COG4235 137 EMEALIARLETHLQQNPGDA------EGWDLLGRAYMALGRASDALLAY------------------RNALRLAGDNPEI 192 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhcchhHHHHHH------------------HHHHHhCCCCHHH
Confidence 45666777888899999996 99999999999999999999888 9999999999999
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 478 YFRQSLLLLRLN---CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 478 ~~~la~~~~~~g---~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+..+|.++..+. ...++...|++++..+|.+..+++.||..++.+|+|.+|+..++..++..|.+
T Consensus 193 ~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 193 LLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 999999777643 45689999999999999999999999999999999999999999999988876
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.5e-07 Score=75.35 Aligned_cols=67 Identities=25% Similarity=0.402 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHH
Q 004336 508 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 587 (760)
Q Consensus 508 ~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~ 587 (760)
++..|..+|.+++..|++++|+..|+++++++|++ +.+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~----------------------------------------~~~~~ 41 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN----------------------------------------AEAYY 41 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH----------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------------------------------------HHHHH
Confidence 56788888999999999999999999999888888 78888
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhhcc
Q 004336 588 NLGSVYVDCG-QLDLAADCYSNALKIRH 614 (760)
Q Consensus 588 ~Lg~~y~~~g-~~~eA~~~~~~Al~~~~ 614 (760)
++|.++...| ++++|+..|+++++++|
T Consensus 42 ~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 42 NLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 8888888888 68888888888888765
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-07 Score=79.34 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=72.7
Q ss_pred ccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 004336 436 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 513 (760)
Q Consensus 436 ~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~ 513 (760)
.|+++.|+.++ ++++..+|. +...++.+|.+|.+.|++++|+..+++ .+.+|.+...++
T Consensus 2 ~~~y~~Ai~~~------------------~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYY------------------EKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHH------------------HHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred CccHHHHHHHH------------------HHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence 58899999999 999999995 567788899999999999999999999 888888889999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHH
Q 004336 514 YEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 514 ~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
.+|.++..+|++++|+..++++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999999875
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.5e-05 Score=86.14 Aligned_cols=285 Identities=16% Similarity=0.072 Sum_probs=173.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC
Q 004336 394 LLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 473 (760)
Q Consensus 394 l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~ 473 (760)
.+.|..++|+.+|++.-. +-++..+|...|.|++|.++....++ -.
T Consensus 811 ieLgMlEeA~~lYr~ckR--------------~DLlNKlyQs~g~w~eA~eiAE~~DR--------------------iH 856 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR--------------YDLLNKLYQSQGMWSEAFEIAETKDR--------------------IH 856 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH--------------HHHHHHHHHhcccHHHHHHHHhhccc--------------------ee
Confidence 344488888888877632 33466778888888888877622222 01
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCCC----------cHHHHHHHHHHHHHCCCHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLA----------RQHAAS----------DHERLVYEGWILYDTSHCEEGLRKAE 533 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~ka----------l~~~p~----------~~~a~~~Lg~i~~~~g~~eeAl~~~~ 533 (760)
--..|++.|.-+...++.+.|+++|+++ +..+|. +...|...|.-+...|+.+.|+.+|.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 1346788888888888888888888865 233343 34556778888899999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 534 ESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 534 ~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
.+- -||.+..+..-+ |+.++|..+.++.-++ .+-+.+|..|...|++.+|+..|.+|-...
T Consensus 937 ~A~-------D~fs~VrI~C~q-----------Gk~~kAa~iA~esgd~-AAcYhlaR~YEn~g~v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 937 SAK-------DYFSMVRIKCIQ-----------GKTDKAARIAEESGDK-AACYHLARMYENDGDVVKAVKFFTRAQAFS 997 (1416)
T ss_pred Hhh-------hhhhheeeEeec-----------cCchHHHHHHHhcccH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 884 355555555555 7788888777766554 356678999999999999999998876521
Q ss_pred ch----------HHHHHH------------HHHHHHcC-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHH
Q 004336 614 HT----------RAHQGL------------ARVHFLKN-NKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEM 670 (760)
Q Consensus 614 ~~----------~a~~~L------------a~~~~~~g-~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~k 670 (760)
+. +-+.++ |+.|...| ..+.|..+|.++=-+.. +.+.... .+.-.|++.+
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~k----ALelAF~-tqQf~aL~lI-- 1070 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGK----ALELAFR-TQQFSALDLI-- 1070 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHH----HHHHHHh-hcccHHHHHH--
Confidence 11 222222 33333343 44444444443211110 0000000 0111222222
Q ss_pred HHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHH------HHHc----------------CCC------cH-HHH---H
Q 004336 671 VTQLDPL-RVYPYRYRAAVLMDSHKENEAIAELSR------AIAF----------------KAD------LH-LLH---L 717 (760)
Q Consensus 671 al~l~p~-~~~~~~~La~~~~~~g~~~eAi~~l~k------al~~----------------~p~------~~-~~~---l 717 (760)
+-.++|+ ++.....-+..+....+|++|...+-. |+.+ .|. .. ..+ .
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 2234554 455566667777788888888876544 3322 111 11 111 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 004336 718 RAAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 718 ~a~~~~~~g~~~~A~~~~~~a 738 (760)
.+.+..++|.|..|.+-|.+|
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhh
Confidence 278888889999998888776
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00022 Score=70.29 Aligned_cols=200 Identities=22% Similarity=0.196 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 552 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~--~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l 552 (760)
.......+..+...+.+..+...+...+. ..+.....+...|..+...+++.+++..+.+++...+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 128 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP---------- 128 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----------
Confidence 45555556666666666666666666655 455555666666666666666666666666666554443
Q ss_pred HcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhcc---h--HHHHHHHHHHH
Q 004336 553 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS-VYVDCGQLDLAADCYSNALKIRH---T--RAHQGLARVHF 626 (760)
Q Consensus 553 ~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~-~y~~~g~~~eA~~~~~~Al~~~~---~--~a~~~La~~~~ 626 (760)
.......+. ++...|++++|...|.+++...+ . ......+..+.
T Consensus 129 ------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (291)
T COG0457 129 ------------------------------DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLE 178 (291)
T ss_pred ------------------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH
Confidence 111111222 55566666666666666655333 1 22333333333
Q ss_pred HcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 627 LKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPL-RVYPYRYRAAVLMDSHKENEAIAELSRA 705 (760)
Q Consensus 627 ~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~-~~~~~~~La~~~~~~g~~~eAi~~l~ka 705 (760)
..++++.|+..+. +++...+. ....+..++..+...+++++|+..+.++
T Consensus 179 ~~~~~~~a~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 228 (291)
T COG0457 179 ALGRYEEALELLE------------------------------KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA 228 (291)
T ss_pred HhcCHHHHHHHHH------------------------------HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 3444433333333 33333333 3444555555555555666666666666
Q ss_pred HHcCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004336 706 IAFKADLHL-LHLRAAFHEHTGDVLGALRDCRAALSVDPN 744 (760)
Q Consensus 706 l~~~p~~~~-~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~ 744 (760)
+...|.... ....+..+...|+++++...+.+++...|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 229 LELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 665555221 112222222445566666666666655554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.6e-07 Score=77.71 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=68.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchh
Q 004336 487 RLNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 564 (760)
Q Consensus 487 ~~g~~~~Ai~~l~kal~~~p~--~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~ 564 (760)
.+|++++|+..++++++..|. +...++.+|.+++..|++++|+..+++ ...+|.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~---------------------- 57 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN---------------------- 57 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH----------------------
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC----------------------
Confidence 368999999999999999995 566788899999999999999999999 7777766
Q ss_pred hhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 565 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 565 ~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~A 609 (760)
......+|.++...|++++|+..|+++
T Consensus 58 ------------------~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 58 ------------------PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp ------------------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 566667788899999999999988875
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00025 Score=70.00 Aligned_cols=226 Identities=22% Similarity=0.186 Sum_probs=173.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH--hCCC
Q 004336 396 RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE--SDAP 473 (760)
Q Consensus 396 ~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~--~~p~ 473 (760)
.+.+..+...+...+...+... ........+..+...+.+..+...+ ...+. ..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~ 93 (291)
T COG0457 36 LGELAEALELLEEALELLPNSD----LAGLLLLLALALLKLGRLEEALELL------------------EKALELELLPN 93 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcccc----chHHHHHHHHHHHHcccHHHHHHHH------------------HHHHhhhhccc
Confidence 3477788888888888877630 0266777888889999999998888 66665 6788
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHCCCHHHHHHHHHHHHhhcCC-hHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW-ILYDTSHCEEGLRKAEESIQMKRS-FEAFFLKAYA 551 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~-i~~~~g~~eeAl~~~~~al~l~p~-~~a~~~la~~ 551 (760)
....+...+..+...+++..++..+.+++...+.........+. ++...|++++|...+++++...|. .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------- 164 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELN--------- 164 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc---------
Confidence 89999999999999999999999999999988877666666666 899999999999999999876663 1
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch---HHHHHHHHHHHHc
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLK 628 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---~a~~~La~~~~~~ 628 (760)
.....+...+..+...+++++|+..+.+++...+. ..+..++..+...
T Consensus 165 -----------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 165 -----------------------------ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred -----------------------------chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 00344555555588889999999999999986544 6788888888888
Q ss_pred CCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 629 NNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 629 g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
+++..|...+..++...|. ....+..++..+...+.++++...+.+++..
T Consensus 216 ~~~~~a~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPD------------------------------NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc------------------------------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8777777777766666664 3334445555555666677777777777777
Q ss_pred CCC
Q 004336 709 KAD 711 (760)
Q Consensus 709 ~p~ 711 (760)
.|.
T Consensus 266 ~~~ 268 (291)
T COG0457 266 DPD 268 (291)
T ss_pred Ccc
Confidence 776
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-06 Score=96.17 Aligned_cols=133 Identities=11% Similarity=0.007 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhh--cCChHH
Q 004336 478 YFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSH--------CEEGLRKAEESIQM--KRSFEA 544 (760)
Q Consensus 478 ~~~la~~~~~~g~---~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~--------~eeAl~~~~~al~l--~p~~~a 544 (760)
++..|..+...++ ..+|+.+|+++++++|+++.++..++.++..... ..++....++++.+ +|..
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~-- 419 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL-- 419 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC--
Confidence 3455666665544 7799999999999999999999988887755422 22333333333332 2222
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHHH
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLAR 623 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La~ 623 (760)
+.++..+|..+...|++++|...+++|+..+|. .++..+|.
T Consensus 420 --------------------------------------~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~ 461 (517)
T PRK10153 420 --------------------------------------PRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGK 461 (517)
T ss_pred --------------------------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567788888888999999999999999999887 78999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhccCcHH
Q 004336 624 VHFLKNNKTTAYEEMTKLIKKARNNAS 650 (760)
Q Consensus 624 ~~~~~g~~~~A~~~l~~al~~~~~~~~ 650 (760)
++...|++++|++.|++++.++|....
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999999988888885543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.3e-06 Score=87.72 Aligned_cols=106 Identities=11% Similarity=0.130 Sum_probs=88.7
Q ss_pred cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 474 KGVLYFRQSLLL-LRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 474 ~~~~~~~la~~~-~~~g~~~~Ai~~l~kal~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
+...+|..|..+ ...|++++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|++++...|++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s------- 213 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS------- 213 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------
Confidence 456778888765 66799999999999999999987 5789999999999999999999999999888876
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTR 616 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~ 616 (760)
. ...++++.+|.++...|++++|...|+++++..|..
T Consensus 214 -----------------~-------------~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 214 -----------------P-------------KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred -----------------c-------------chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 0 016788888888988999999999999888876663
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0015 Score=68.78 Aligned_cols=301 Identities=16% Similarity=0.006 Sum_probs=209.9
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
+++..-...|.+....|+-..|.++-.+.-++-..+. ..-...+-+....-.|+++.|..-|
T Consensus 82 drgyqALStGliAagAGda~lARkmt~~~~~llssDq----epLIhlLeAQaal~eG~~~~Ar~kf-------------- 143 (531)
T COG3898 82 DRGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQ----EPLIHLLEAQAALLEGDYEDARKKF-------------- 143 (531)
T ss_pred hhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccc----hHHHHHHHHHHHHhcCchHHHHHHH--------------
Confidence 3444445567777888899999999888764443332 0123334456667789999998877
Q ss_pred HHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Q 004336 461 LSVIYQMLESDAPKGV-LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM- 538 (760)
Q Consensus 461 l~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l- 538 (760)
+.++. +|+.-. .+..+-.--.+.|..+.|+.+-+++-...|.-+.++...-......|+++.|++..+.....
T Consensus 144 ----eAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 144 ----EAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred ----HHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 44443 333211 11122223456899999999999999999998888888778888999999999988776542
Q ss_pred --cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-
Q 004336 539 --KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT- 615 (760)
Q Consensus 539 --~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~- 615 (760)
.++. +-... +..+...+.... .-+...|.+.-.+++++.|.
T Consensus 219 vie~~~-aeR~r----------------------------------AvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdl 262 (531)
T COG3898 219 VIEKDV-AERSR----------------------------------AVLLTAKAMSLL-DADPASARDDALEANKLAPDL 262 (531)
T ss_pred hhchhh-HHHHH----------------------------------HHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCcc
Confidence 1211 11111 122222222222 23477788888888888777
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--CcHHHHHHHHhcCCHHH-HHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004336 616 -RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR--NNASAYEKRSEYCDREL-TRADLEMVTQLDPLRVYPYRYRAAVLMD 691 (760)
Q Consensus 616 -~a~~~La~~~~~~g~~~~A~~~l~~al~~~~--~~~~~~~~~~~~~~~~~-A~~~l~kal~l~p~~~~~~~~La~~~~~ 691 (760)
.+-.--++.+++.|+..++-..++.+.+..| .....|... ..|+... -.+...+...+.|++.+.....+..-..
T Consensus 263 vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a-r~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 263 VPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRA-RSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred chHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHh-cCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 5666678888999999999999998888877 344444333 3343221 2333445566789999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 004336 692 SHKENEAIAELSRAIAFKADLHLLHLRAAFHEHT-GDVLGALRDCRAALSV 741 (760)
Q Consensus 692 ~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~-g~~~~A~~~~~~aL~l 741 (760)
-|++..|...-+.+....|....+.+.+.+-... ||..++...+-++++-
T Consensus 342 a~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 342 AGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999999999999999999888777777777765 9999999999999873
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.3e-05 Score=89.64 Aligned_cols=212 Identities=16% Similarity=0.066 Sum_probs=154.0
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-AASD----HERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-~p~~----~~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
+...+.+.+..+|+.+..|.++-..+++.++.++|.+..++||.. ++.. ...|..+-++...-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 555667777777777777777777777777777777777777753 3322 23344444444444555555566666
Q ss_pred HHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 535 SIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 535 al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
|-+.... -.+|..|..+|...+++++|.++|+..++.-.
T Consensus 1523 Acqycd~-----------------------------------------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~ 1561 (1710)
T KOG1070|consen 1523 ACQYCDA-----------------------------------------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG 1561 (1710)
T ss_pred HHHhcch-----------------------------------------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 6544322 35777788888888888888888888888433
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc--HH----HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 004336 615 --TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN--AS----AYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRA 686 (760)
Q Consensus 615 --~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~--~~----~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La 686 (760)
..+|..+|..+.++++-++|...+.++++..|.. -. .......+|+.+.+...|+-.+..+|.....|.-+.
T Consensus 1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 2788888888888888888888888888888852 11 222234678889999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc
Q 004336 687 AVLMDSHKENEAIAELSRAIAFKADL 712 (760)
Q Consensus 687 ~~~~~~g~~~eAi~~l~kal~~~p~~ 712 (760)
..-.+.|+.+-+...|++++.+.-..
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 99999999999999999999875443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.7e-05 Score=76.68 Aligned_cols=188 Identities=13% Similarity=0.069 Sum_probs=122.5
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..+|.-|...+..|+|++|+..|+.+....|..+.. + .+...++..+.+.+++++|+..+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~--~-qa~l~l~yA~Yk~~~y~~A~~~~---------------- 94 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS--E-QAQLDLAYAYYKNGEYDLALAYI---------------- 94 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--H-HHHHHHHHHHHhcccHHHHHHHH----------------
Confidence 4557777888888889999999999999999988622 2 44555555555555555555555
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--------HCCCHHHHHHHHHH
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY--------DTSHCEEGLRKAEE 534 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~--------~~g~~eeAl~~~~~ 534 (760)
.+-+.+.|.++.+ ..+++..|.+++ ++....+|+..+++
T Consensus 95 --drFi~lyP~~~n~-------------------------------dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~ 141 (254)
T COG4105 95 --DRFIRLYPTHPNA-------------------------------DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE 141 (254)
T ss_pred --HHHHHhCCCCCCh-------------------------------hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHH
Confidence 4444444433221 123333343333 23345678888888
Q ss_pred HHhhcCCh----HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 535 SIQMKRSF----EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 535 al~l~p~~----~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
.+...|+. ++...+..+-... +.--..+|..|.+.|.+..|+.-++..+
T Consensus 142 ~i~ryPnS~Ya~dA~~~i~~~~d~L---------------------------A~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 142 LVQRYPNSRYAPDAKARIVKLNDAL---------------------------AGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHHHCCCCcchhhHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99888887 2222222111111 4444567999999999999999999999
Q ss_pred hhcch-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH
Q 004336 611 KIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 649 (760)
Q Consensus 611 ~~~~~-----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~ 649 (760)
+.-+. +++..+..+|...|-.++|.+.-.-+-...|+..
T Consensus 195 e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 195 ENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred hccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 85333 8999999999999999888766554434444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=70.71 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=59.7
Q ss_pred HHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004336 428 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 507 (760)
Q Consensus 428 ~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~ 507 (760)
.+|..+...|++++|+..+ ++++..+|+++.+++.+|.++..+|++++|+..|+++++.+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~------------------~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAF------------------EQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHH------------------HHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHH------------------HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5788999999999999999 9999999999999999999999999999999999999999998
Q ss_pred cH
Q 004336 508 DH 509 (760)
Q Consensus 508 ~~ 509 (760)
++
T Consensus 64 ~p 65 (65)
T PF13432_consen 64 NP 65 (65)
T ss_dssp -H
T ss_pred CC
Confidence 75
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.2e-05 Score=85.37 Aligned_cols=135 Identities=13% Similarity=0.055 Sum_probs=113.2
Q ss_pred HHHH---HhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 004336 465 YQML---ESDAPKGVLYFRQSLLLLRL---------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 532 (760)
Q Consensus 465 ~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~ 532 (760)
.+++ ..+|+.+.+|-.++.++... ....+|.+..++|++++|.++.++..+|.++...|+++.|+..|
T Consensus 282 ~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f 361 (458)
T PRK11906 282 DRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILF 361 (458)
T ss_pred HHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHH
Confidence 9999 99999999999999987754 34568888999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 533 EESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 533 ~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
++++.++|++ +.+++..|.+..-.|+.++|.+..+++++.
T Consensus 362 ~rA~~L~Pn~----------------------------------------A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 362 EQAKIHSTDI----------------------------------------ASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHhhcCCcc----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 9999999999 899999999999999999999999999999
Q ss_pred cchHHHHH---HHH-HHHHcCCHHHHHHHHHH
Q 004336 613 RHTRAHQG---LAR-VHFLKNNKTTAYEEMTK 640 (760)
Q Consensus 613 ~~~~a~~~---La~-~~~~~g~~~~A~~~l~~ 640 (760)
+|...-.. +-. .|+ ..-.++|+..|-+
T Consensus 402 sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 402 EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred CchhhHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 99832222 222 333 3345566665543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.4e-06 Score=73.86 Aligned_cols=99 Identities=17% Similarity=0.076 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 552 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l 552 (760)
.++|.+|.++...|+.++|+..|++++...... ..++..+|..+...|++++|+..+++++...|+.+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~-------- 73 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL-------- 73 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--------
Confidence 467888999999999999999999999875443 467888999999999999999999999888777300
Q ss_pred HcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 553 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 553 ~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
...+...++.++...|++++|+..+-.++.
T Consensus 74 -----------------------------~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 -----------------------------NAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred -----------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 034445567777788888888888777664
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.5e-06 Score=90.41 Aligned_cols=114 Identities=20% Similarity=0.129 Sum_probs=104.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH
Q 004336 396 RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 475 (760)
Q Consensus 396 ~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~ 475 (760)
.++++.|+.+|++..+.+|+. ...++.++...++..+|+.++ ++++..+|.+.
T Consensus 182 t~~~~~ai~lle~L~~~~pev---------~~~LA~v~l~~~~E~~AI~ll------------------~~aL~~~p~d~ 234 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEV---------AVLLARVYLLMNEEVEAIRLL------------------NEALKENPQDS 234 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcH---------HHHHHHHHHhcCcHHHHHHHH------------------HHHHHhCCCCH
Confidence 358999999999999988754 455888888899999999999 99999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
.++..++..+...++++.|++..+++.+..|++...|+.|+.+|...|++++|+..++..-
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999998887543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.9e-06 Score=78.35 Aligned_cols=108 Identities=4% Similarity=-0.102 Sum_probs=96.3
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
..+....++.-+..|..|.-+...|++++|...|+-..-.+|.+++.+..||.++..+++|++|+..|..+..+++++
T Consensus 27 k~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-- 104 (165)
T PRK15331 27 KDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-- 104 (165)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--
Confidence 344455566778889999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
+...+..|.+|+..|+.++|..+|+.++..
T Consensus 105 --------------------------------------p~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 105 --------------------------------------YRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred --------------------------------------CCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 667788899999999999999999999873
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.9e-06 Score=84.49 Aligned_cols=101 Identities=7% Similarity=-0.038 Sum_probs=91.1
Q ss_pred HHHHHHHHHH-HHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 424 AASQLHMLVR-EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQ 499 (760)
Q Consensus 424 ~a~~~lg~l~-~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~ 499 (760)
...+..+..+ ...|+|++|+..| ++.+...|+. +.+++.+|.+|...|++++|+..|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af------------------~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~ 204 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAF------------------QNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFA 204 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH------------------HHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666654 5679999999999 9999999988 5899999999999999999999999
Q ss_pred HHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 500 LARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 500 kal~~~p~---~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
++++..|+ .+++++.+|.++...|++++|...|+++++..|+.
T Consensus 205 ~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 205 SVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99988776 57899999999999999999999999999999998
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00089 Score=75.00 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=48.2
Q ss_pred HHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHH------HHHhhC----CCCcchhchHHHHHHHHHHHHHccCHHH
Q 004336 372 LLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFE------AILTLS----PDYRMFEGRVAASQLHMLVREHIDNWTI 441 (760)
Q Consensus 372 l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~------~aL~l~----P~~~~~~~~~~a~~~lg~l~~~~g~~~~ 441 (760)
+++......-+...|-..|.++-+..++++|+++|+ +++++. |... +..-...|.-+.+.|+++.
T Consensus 650 il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~ev-----v~lee~wg~hl~~~~q~da 724 (1636)
T KOG3616|consen 650 ILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEV-----VKLEEAWGDHLEQIGQLDA 724 (1636)
T ss_pred HHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHH-----hhHHHHHhHHHHHHHhHHH
Confidence 334444445667778888999999999999999988 344432 3332 2233445777788899998
Q ss_pred HHHHH
Q 004336 442 ADCWL 446 (760)
Q Consensus 442 A~~~l 446 (760)
|+..+
T Consensus 725 ainhf 729 (1636)
T KOG3616|consen 725 AINHF 729 (1636)
T ss_pred HHHHH
Confidence 88877
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-06 Score=91.00 Aligned_cols=74 Identities=16% Similarity=0.101 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 681 PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 681 ~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
.+.+++.++.++++|.+|+....++|..+|++....++ +.++..+|+++.|+..|+++++++|+|.++-.-+.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34555666666666666666666666666665544444 555555566666666666666666665555443333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0015 Score=75.39 Aligned_cols=226 Identities=14% Similarity=0.028 Sum_probs=155.7
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
..+++..|.....++++..|+.. .+..+-|....++|+.++|...+ +..-...+++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~------~a~vLkaLsl~r~gk~~ea~~~L------------------e~~~~~~~~D 76 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL------YAKVLKALSLFRLGKGDEALKLL------------------EALYGLKGTD 76 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHHhcCchhHHHHH------------------hhhccCCCCc
Confidence 34599999999999999999996 88888999999999999999888 4444455667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHH--HHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL--KAYAL 552 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~--la~~l 552 (760)
-..+-.+-.+|.++|++++|..+|+++...+|+ -+.++.+=.+|.+.+.|.+=.+.--+..+..|....|+. ...++
T Consensus 77 ~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 77 DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 777888889999999999999999999999999 777777778888888887666666666667777733333 33333
Q ss_pred HcccCCCCcchhhhhHHHHHHhhhHhhccH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-c---chHHHHHH
Q 004336 553 ADSSQDSSCSSTVVSLLEDALKCPSDRLRK-------GQALNNLGSVYVDCGQLDLAADCYSNALKI-R---HTRAHQGL 621 (760)
Q Consensus 553 ~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-~---~~~a~~~L 621 (760)
......+.... --.+.-|.+..+..+.. +++. ..-.++..+|++++|.+.+..-+.. . +......-
T Consensus 156 qs~~~~~~~~~--~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~ 232 (932)
T KOG2053|consen 156 QSIFSENELLD--PILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKK 232 (932)
T ss_pred HhccCCccccc--chhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 32211111111 01111222222222111 1221 2234566788999999999554442 1 11333445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCc
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNN 648 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~ 648 (760)
...+...+++.+-.+...+++...+++
T Consensus 233 ~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 233 LDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 667778888888888888888888865
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.5e-06 Score=79.22 Aligned_cols=76 Identities=30% Similarity=0.309 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 681 PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 681 ~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
.|.+.|.+++++++++.|++...+++++.|.+..+..+ +.+|.++..+++|+..|+++++.+|...++.+...|+.
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 46677889999999999999999999999998877766 99999999999999999999999999888887777765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00012 Score=82.86 Aligned_cols=177 Identities=14% Similarity=0.076 Sum_probs=106.1
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
|...|+.+.|.+..+-+- .. ..|-+++....+..+.+-|...+-.. ........++++.+..
T Consensus 738 yvtiG~MD~AfksI~~Ik----S~-------~vW~nmA~McVkT~RLDVAkVClGhm------~~aRgaRAlR~a~q~~- 799 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK----SD-------SVWDNMASMCVKTRRLDVAKVCLGHM------KNARGARALRRAQQNG- 799 (1416)
T ss_pred EEEeccHHHHHHHHHHHh----hh-------HHHHHHHHHhhhhccccHHHHhhhhh------hhhhhHHHHHHHHhCC-
Confidence 344569988866654331 12 56778888888888888887766111 1122233445554433
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 552 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l 552 (760)
+ +.-...|.+..++|..++|...|++.-. +-.|-.+|...|++++|.+..+.--++.-. ..|++.|.-+
T Consensus 800 ~--e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr-~Tyy~yA~~L 868 (1416)
T KOG3617|consen 800 E--EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR-NTYYNYAKYL 868 (1416)
T ss_pred c--chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehh-hhHHHHHHHH
Confidence 2 2333456677788888999988887543 345566777888888887766542222111 4566666666
Q ss_pred HcccCCCCcchhhhhHHHHHHhhhHhhccH------------------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 553 ADSSQDSSCSSTVVSLLEDALKCPSDRLRK------------------------GQALNNLGSVYVDCGQLDLAADCYSN 608 (760)
Q Consensus 553 ~~~~~~~~~~~~~~~~leeAl~~~~~~l~~------------------------~~a~~~Lg~~y~~~g~~~eA~~~~~~ 608 (760)
... +..+.|+++|++.-.+ ...|...|..+...|+.+.|+.+|..
T Consensus 869 ear-----------~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 869 EAR-----------RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred Hhh-----------ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 665 5666666666665221 34455555555566666666666655
Q ss_pred H
Q 004336 609 A 609 (760)
Q Consensus 609 A 609 (760)
|
T Consensus 938 A 938 (1416)
T KOG3617|consen 938 A 938 (1416)
T ss_pred h
Confidence 5
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.8e-07 Score=94.36 Aligned_cols=229 Identities=12% Similarity=-0.009 Sum_probs=154.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccC
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 557 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~ 557 (760)
.-..|+-|+++|.|++|+.+|.+++..+|.++..+.+.+.+|+...++..|...++.++.++..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y--------------- 164 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY--------------- 164 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH---------------
Confidence 45678999999999999999999999999999999999999999999999999999999887766
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHH--
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTT-- 633 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~-- 633 (760)
..+|...|......|+..+|.+-++.++++.|. +..-.++ ......+
T Consensus 165 -------------------------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a----~i~Sl~E~~ 215 (536)
T KOG4648|consen 165 -------------------------VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLA----RINSLRERK 215 (536)
T ss_pred -------------------------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHH----HhcchHhhh
Confidence 667777788888888889999999999987776 2222222 2222111
Q ss_pred -----------HHHHHHHHH-HhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004336 634 -----------AYEEMTKLI-KKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 634 -----------A~~~l~~al-~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~ 701 (760)
|.+-..+++ ...+. ...+..|.++.++.++..-...+..+...-.+ +..|.+..++++|+..
T Consensus 216 I~~KsT~G~~~A~Q~~~Q~l~~K~~G-----~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~ 289 (536)
T KOG4648|consen 216 IATKSTPGFTPARQGMIQILPIKKPG-----YKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIE 289 (536)
T ss_pred HHhhcCCCCCccccchhhhccccCcc-----hhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHH
Confidence 222122222 11111 11112233444555544444333333322222 6677777888889888
Q ss_pred HHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 702 LSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 702 l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
..+++..+|.......+ +...--.|...++...++.++.+.|.+........|+.
T Consensus 290 ~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~~ 345 (536)
T KOG4648|consen 290 EVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRKD 345 (536)
T ss_pred HHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhhc
Confidence 88888777665433322 33333336778888999999999998887777666654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00018 Score=72.19 Aligned_cols=251 Identities=15% Similarity=0.020 Sum_probs=170.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcch
Q 004336 484 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 563 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~ 563 (760)
-++-.|+|.+++..-++.-... ...+...++...|..+|++..-+.-...+- .|...+...++..+..-
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqAvr~~a~~~~~e-------- 85 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQAVRLLAEYLELE-------- 85 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc--CChHHHHHHHHHHhhCc--------
Confidence 3445788888887766654433 667788888899999998876655443332 12224444444444433
Q ss_pred hhhhHHHHHHhhhHhh----ccH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHH
Q 004336 564 TVVSLLEDALKCPSDR----LRK--GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEE 637 (760)
Q Consensus 564 ~~~~~leeAl~~~~~~----l~~--~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~ 637 (760)
+..++-+....+. ... ......-|.++...|++++|.+....... -++...-..++.+..+.+-|.+.
T Consensus 86 ---~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~---lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 86 ---SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN---LEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred ---chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222221 111 23444557889999999999988876322 24444456677888899999999
Q ss_pred HHHHHHhcc-----CcHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 638 MTKLIKKAR-----NNASAYEKRSEY-CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 638 l~~al~~~~-----~~~~~~~~~~~~-~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
+++..+.+. ..+.+|...+.- +...+|.-.|+...+..|..+......|.+.+.+|++++|...++.++..+++
T Consensus 160 lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 160 LKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 999988876 245666665433 35788999999999888888899999999999999999999999999999999
Q ss_pred cHHHHHH-HHHHHHcCCHHHH-HHHHHHHHhcCCCcHHHHHH
Q 004336 712 LHLLHLR-AAFHEHTGDVLGA-LRDCRAALSVDPNDQEMLEL 751 (760)
Q Consensus 712 ~~~~~l~-a~~~~~~g~~~~A-~~~~~~aL~l~P~~~~~l~~ 751 (760)
++..... ..+-...|...++ .+...+....+|+|+-+..+
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHL 281 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHH
Confidence 9877744 3333344665554 45566777788999866544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.6e-06 Score=69.03 Aligned_cols=65 Identities=18% Similarity=0.103 Sum_probs=58.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHH
Q 004336 485 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 549 (760)
Q Consensus 485 ~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la 549 (760)
++..|++++|++.|++++..+|++.++++.+|.++...|++++|...+++++..+|++ ..+..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3678999999999999999999999999999999999999999999999999999998 5555444
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-06 Score=88.76 Aligned_cols=230 Identities=10% Similarity=-0.042 Sum_probs=149.0
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..+-..|+-|+.+|.|++|+.+|.+++..+|.++ -.+.+.+..|.+...+..|..-.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np------V~~~NRA~AYlk~K~FA~AE~DC---------------- 154 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP------VYHINRALAYLKQKSFAQAEEDC---------------- 154 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCc------cchhhHHHHHHHHHHHHHHHHhH----------------
Confidence 33356678899999999999999999999999997 55667888888888888888777
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
..++.++.....+|.+.|.+-..+|...+|.+.++.++.+.|++.+..-.++.+. ...++ +-+.+..|.+
T Consensus 155 --~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~----Sl~E~----~I~~KsT~G~ 224 (536)
T KOG4648|consen 155 --EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARIN----SLRER----KIATKSTPGF 224 (536)
T ss_pred --HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc----chHhh----hHHhhcCCCC
Confidence 8888888888889999999999999999999999999999998766554443332 22222 1112222333
Q ss_pred -HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--
Q 004336 543 -EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-- 615 (760)
Q Consensus 543 -~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-- 615 (760)
++.......+... +++..-...+..+.++.++-+.... ...-.+ +..|.+.-+++.|+.-..+++.+++.
T Consensus 225 ~~A~Q~~~Q~l~~K--~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~ 301 (536)
T KOG4648|consen 225 TPARQGMIQILPIK--KPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPM 301 (536)
T ss_pred Cccccchhhhcccc--CcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcC
Confidence 3333333332111 0011111123444444444433111 111112 55667777788887777777766554
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 647 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~ 647 (760)
....+.+.+-...|...++...++.++...|.
T Consensus 302 ~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~ 333 (536)
T KOG4648|consen 302 PDTSGPPKAETIAKTSKEVKPTKQTAVKVAPA 333 (536)
T ss_pred cccCCCchhHHHHhhhhhcCcchhheeeeccc
Confidence 44444455555566677777777777777663
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.5e-06 Score=76.44 Aligned_cols=99 Identities=11% Similarity=-0.052 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
+.-...|..|.-++..|++++|...|+-+...+|.++ +-+..||.++...++|++|+..+
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~------~Y~~GLaa~~Q~~k~y~~Ai~~Y-------------- 94 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP------DYTMGLAAVCQLKKQFQKACDLY-------------- 94 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH------HHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 3455666666666666666666666666666666664 55555666666666666666666
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..+...+++++...+..|.+|+.+|+.+.|+.+|+.++.
T Consensus 95 ----~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 95 ----AVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ----HHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 555555566666666666666666666666666666655
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-05 Score=71.95 Aligned_cols=97 Identities=20% Similarity=0.092 Sum_probs=65.0
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
+++.+.++-..|+.++|+..|++++...+... .+..++..+|..+...|++++|+.++ +
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~---~~~~a~i~lastlr~LG~~deA~~~L------------------~ 62 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGA---DRRRALIQLASTLRNLGRYDEALALL------------------E 62 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHHHHcCCHHHHHHHH------------------H
Confidence 44444455555588888888888877654432 11356677777777777777777777 6
Q ss_pred HHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 466 QMLESDAP---KGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 466 ~al~~~p~---~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
+.+...|+ +..+...++.++...|++++|+..+-.++.
T Consensus 63 ~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 63 EALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77766666 666666777777777777777777766553
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00012 Score=69.49 Aligned_cols=127 Identities=18% Similarity=0.133 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCC
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALK---IRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCD 660 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~---~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~ 660 (760)
+-.+.||..+.+.|++.+|...|++++. .+....+.++++..+..+++..|...++++.+..|.-
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~------------ 157 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF------------ 157 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc------------
Confidence 4567789999999999999999999998 2334788999999999999988888888777766511
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 661 RELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 661 ~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~a 738 (760)
..+.....+|.+|...|++.+|...|+.++...|+.....+-+..+.++|+.++|..-+..+
T Consensus 158 ----------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 158 ----------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred ----------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 23344556678888888888888888888888888776555566666778777776655444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.2e-06 Score=68.29 Aligned_cols=70 Identities=26% Similarity=0.324 Sum_probs=58.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 686 AAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 686 a~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
..+|...+++++|++.+++++..+|+++..+ ..|.++..+|++.+|++.++++++..|+++++..+..++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 5678888999999999999999999888777 458888888999999999999999999888887776655
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00051 Score=69.35 Aligned_cols=180 Identities=11% Similarity=0.084 Sum_probs=123.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh----HHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF----EAFF 546 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~----~a~~ 546 (760)
.+..+++.|...++.|++++|++.|+.+....|.. ..+...++.++++.+++++|+...++-+.+.|.+ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988765 4688899999999999999999999999999887 5666
Q ss_pred HHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----------
Q 004336 547 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----------- 615 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----------- 615 (760)
..|.++...-.+.... +.-..+|+..|+..+..-|+
T Consensus 113 lkgLs~~~~i~~~~rD---------------------------------q~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i 159 (254)
T COG4105 113 LKGLSYFFQIDDVTRD---------------------------------QSAARAAFAAFKELVQRYPNSRYAPDAKARI 159 (254)
T ss_pred HHHHHHhccCCccccC---------------------------------HHHHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 6666655441111111 11112233333333332221
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 004336 616 --------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAA 687 (760)
Q Consensus 616 --------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~ 687 (760)
.--..+|+.|.+.|.+-.|+.-++.+++..|+..... +++..+..
T Consensus 160 ~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~---------------------------eaL~~l~e 212 (254)
T COG4105 160 VKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR---------------------------EALARLEE 212 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH---------------------------HHHHHHHH
Confidence 1123467777888888777777777777666443332 34456677
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcH
Q 004336 688 VLMDSHKENEAIAELSRAIAFKADLH 713 (760)
Q Consensus 688 ~~~~~g~~~eAi~~l~kal~~~p~~~ 713 (760)
+|..+|-.++|...-.-.-...|+.+
T Consensus 213 aY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 213 AYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 88889988888876544444455554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00029 Score=84.20 Aligned_cols=233 Identities=11% Similarity=0.011 Sum_probs=181.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-cCChHHHHHHHHHHHcccCCCCcchhhhh
Q 004336 489 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM-KRSFEAFFLKAYALADSSQDSSCSSTVVS 567 (760)
Q Consensus 489 g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l-~p~~~a~~~la~~l~~~~~~~~~~~~~~~ 567 (760)
++-.+..+.|++.+..+|+..-.|..+-..+...++.++|.+.+++|+.. ++.-+
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe------------------------ 1493 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE------------------------ 1493 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh------------------------
Confidence 33444567788888899999999999999999999999999999999863 32220
Q ss_pred HHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 568 LLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 568 ~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
+ .+..+|..+-++...-|.-+.-.+.|++|-+...+ .++..|..+|...+++++|.++|+..++...
T Consensus 1494 --e----------EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~ 1561 (1710)
T KOG1070|consen 1494 --E----------EKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG 1561 (1710)
T ss_pred --H----------HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 0 01233433333444445667778899999987555 8999999999999999999999999999988
Q ss_pred CcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-H
Q 004336 647 NNASAYEKRS----EYCDRELTRADLEMVTQLDPL--RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-A 719 (760)
Q Consensus 647 ~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~--~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a 719 (760)
+....|...+ ..++-++|...+.+|++--|. +.......|.+.++.|+.+.+...|+..+.-.|.-.++|.- .
T Consensus 1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 6655554443 335567888999999999998 66777888999999999999999999999999999888844 5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 720 AFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 720 ~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
..-.+.|+.+.+...|++++.+.=.-..+..+|++--+
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 55666699999999999999887666666666666543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.6e-05 Score=84.11 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=106.3
Q ss_pred HHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 004336 430 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 509 (760)
Q Consensus 430 g~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~ 509 (760)
-.+....++++.|+.++ ++..+.+|+ +...++.++...++..+|++.+.+++..+|.+.
T Consensus 176 l~~l~~t~~~~~ai~ll------------------e~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~ 234 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELL------------------EKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDS 234 (395)
T ss_pred HHHHhhcccHHHHHHHH------------------HHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 34445678899999999 888888775 566789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHH
Q 004336 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 589 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~L 589 (760)
+.+...+..+...++++.|+...+++....|+. ...|..|
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~----------------------------------------f~~W~~L 274 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSE----------------------------------------FETWYQL 274 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh----------------------------------------HHHHHHH
Confidence 999999999999999999999999999999999 7888999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 004336 590 GSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 590 g~~y~~~g~~~eA~~~~~~A 609 (760)
+.+|...|++++|+..++..
T Consensus 275 a~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 275 AECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhcCCHHHHHHHHhcC
Confidence 99999999999998777644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.8e-06 Score=67.45 Aligned_cols=64 Identities=23% Similarity=0.181 Sum_probs=32.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 691 DSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 691 ~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
..|++++|+..|++++...|++..+.+. +.++...|++++|...+++++..+|+++....++.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4455555555555555555555544433 555555555555555555555555555544444443
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.18 E-value=8e-06 Score=67.17 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=59.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 482 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 482 a~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
..+|.+.+++++|++++++++..+|+++..+..+|.++..+|++++|+..++++++..|+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 5688999999999999999999999999999999999999999999999999999999988
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.2e-05 Score=73.34 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+..+-.-|.-++..|+|++|..-|..||..-|.... ..+.-.+.+.|.+...++.|+.|+.-.
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dc------------- 157 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDC------------- 157 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHH-------------
Confidence 445666777899999999999999999999999998752 222234445566666666666666666
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 517 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~ 517 (760)
.++++++|.+..++.+.|.+|.+...+++|++.|++.++.+|....+.-....
T Consensus 158 -----sKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 158 -----SKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred -----HhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666555444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0002 Score=68.01 Aligned_cols=140 Identities=14% Similarity=0.069 Sum_probs=115.0
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ-HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~-~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
.+.+...|. ..-.+++|..+.+.|++.+|...|++++. +..+++..+..+++..+..+++.+|...+++..+.+|..
T Consensus 80 ~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~- 157 (251)
T COG4700 80 TEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF- 157 (251)
T ss_pred HHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-
Confidence 444455554 35578899999999999999999999986 456788899999999999999999999999999988876
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHH
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLA 622 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La 622 (760)
+.++....+|..|...|++.+|...|+.++.-.|. .+....+
T Consensus 158 -------------------------------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~ 200 (251)
T COG4700 158 -------------------------------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYA 200 (251)
T ss_pred -------------------------------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHH
Confidence 11566677888999999999999999999987666 6667778
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 004336 623 RVHFLKNNKTTAYEEMTKLIK 643 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~l~~al~ 643 (760)
..+..+|+.++|...+..+.+
T Consensus 201 e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 201 EMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHhcchhHHHHHHHHHHH
Confidence 888899988888777765544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.6e-06 Score=88.79 Aligned_cols=69 Identities=9% Similarity=-0.000 Sum_probs=66.4
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER---LVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a---~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.+|+++.+++++|.+|...|++++|+..|+++++++|++.++ |+++|.+|..+|++++|+..+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 569999999999999999999999999999999999999865 999999999999999999999999997
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.023 Score=61.72 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhhHHH-hcCCHHHHHHHHHHHHhhCCCCcch-hchHHHHHHHHHHHHHcc-CHH
Q 004336 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRL-LRKEYDEAEHLFEAILTLSPDYRMF-EGRVAASQLHMLVREHID-NWT 440 (760)
Q Consensus 364 ~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l-~~g~~~eA~~~~~~aL~l~P~~~~~-~~~~~a~~~lg~l~~~~g-~~~ 440 (760)
....-++..........-.|..+.++|.+++ ..++++.|...++++..+...-+.+ ..+..+..+++.++.+.. .+.
T Consensus 27 k~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~ 106 (629)
T KOG2300|consen 27 KCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFP 106 (629)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 3444445544444444567788888888766 4789999999999998776544444 455688899999998887 677
Q ss_pred HHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 441 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK----GVLYFRQSLLLLRLNCPEAAMRSL 498 (760)
Q Consensus 441 ~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~Ai~~l 498 (760)
.|...+ +++++..... ....+.++.++.-..++.-|++.+
T Consensus 107 ~~KalL------------------rkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 107 PAKALL------------------RKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred hHHHHH------------------HHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 787777 8888776544 345677888888888888888764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0027 Score=66.95 Aligned_cols=254 Identities=16% Similarity=0.105 Sum_probs=161.9
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..+..-++..+..|+|++|.+-|+..+ .+|+.. .-.+..|-+-....|..+.|..|.
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl-~dPEtR-----llGLRgLyleAqr~GareaAr~yA----------------- 177 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAML-DDPETR-----LLGLRGLYLEAQRLGAREAARHYA----------------- 177 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHh-cChHHH-----HHhHHHHHHHHHhcccHHHHHHHH-----------------
Confidence 334444555566779999999888775 455553 233444445556788888888888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHH-----HHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH---AASDHER-----LVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~---~p~~~~a-----~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
+.+-...|.-+.++...-......|+++.|++..+..... .++..+. +...+.. .-.-+...|.....++
T Consensus 178 -e~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldadp~~Ar~~A~~a 255 (531)
T COG3898 178 -ERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDADPASARDDALEA 255 (531)
T ss_pred -HHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHH
Confidence 8888888888888877777888889999998888766543 2332221 1111111 2234577888888888
Q ss_pred HhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Q 004336 536 IQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK--- 611 (760)
Q Consensus 536 l~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~--- 611 (760)
.++.|++ .+-..-+..+... +++.++-.+.+..++. .-+-.++..|....--+.+++-++++-+
T Consensus 256 ~KL~pdlvPaav~AAralf~d-----------~~~rKg~~ilE~aWK~-ePHP~ia~lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 256 NKLAPDLVPAAVVAARALFRD-----------GNLRKGSKILETAWKA-EPHPDIALLYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred hhcCCccchHHHHHHHHHHhc-----------cchhhhhhHHHHHHhc-CCChHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 8888888 7777777777777 7777777777777553 1111233444444444445555554433
Q ss_pred --hcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHH----HHHhcCCHHHHHHHHHHHHhh
Q 004336 612 --IRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE----KRSEYCDRELTRADLEMVTQL 674 (760)
Q Consensus 612 --~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~----~~~~~~~~~~A~~~l~kal~l 674 (760)
.++.+.....+.....-|++..|...-+.+....|....... .-...|+..+....+.+++.-
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 233377777778888888888888888777777774332211 112346777777777777653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00013 Score=67.36 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=73.2
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..++..|...+..|+|++|++.|+.+....|..+. . ..+...++.++...+++++|+..+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--a-~qAqL~l~yayy~~~~y~~A~a~~---------------- 70 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--A-EQAQLDLAYAYYKQGDYEEAIAAY---------------- 70 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--c-HHHHHHHHHHHHHccCHHHHHHHH----------------
Confidence 345677777778888999999999999999998762 2 278889999999999999999999
Q ss_pred HHHHHHHhCCCcH---HHHHHHHHHHHHcCC
Q 004336 463 VIYQMLESDAPKG---VLYFRQSLLLLRLNC 490 (760)
Q Consensus 463 ~~~~al~~~p~~~---~~~~~la~~~~~~g~ 490 (760)
++-++++|.++ .+++..|.++.++..
T Consensus 71 --~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 71 --DRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred --HHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 99999998764 578888988887765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.8e-06 Score=68.26 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=57.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA---A----SDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~---p----~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
|+-+.++.++|.+|..+|++++|+.+|++++++. + ....++.++|.++...|++++|+.++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456788999999999999999999999999762 2 23567899999999999999999999999976
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00017 Score=66.65 Aligned_cols=72 Identities=19% Similarity=0.133 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCC
Q 004336 683 RYRAAVLMDSHKENEAIAELSRAIAFKADLHL----LHLRAAFHEHTGD---------------VLGALRDCRAALSVDP 743 (760)
Q Consensus 683 ~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~----~~l~a~~~~~~g~---------------~~~A~~~~~~aL~l~P 743 (760)
..++.+|++.|++++|+..+++-++++|.++. ++++|..+..... ..+|...|++.+...|
T Consensus 51 L~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 51 LDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 34455555555555555555555555555441 1133444433333 6688888888888888
Q ss_pred CcHHHHHHHHH
Q 004336 744 NDQEMLELHSR 754 (760)
Q Consensus 744 ~~~~~l~~~~r 754 (760)
++.-+-+.-.|
T Consensus 131 ~S~ya~dA~~R 141 (142)
T PF13512_consen 131 NSEYAADARKR 141 (142)
T ss_pred CChhHHHHHhc
Confidence 88777666554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0001 Score=75.01 Aligned_cols=105 Identities=15% Similarity=0.077 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcC
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYC 659 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~ 659 (760)
-.++.+.-++..|+|.+|.+.|..-++..|. .++++||.+++.+|++++|...|..+++.+|.
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------ 210 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------ 210 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC------------
Confidence 3677788888899999999999999886555 78899999999999998888888887777762
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Q 004336 660 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 660 ~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~ 716 (760)
.|.-+++++.+|.+..++|+.++|...|+++++..|+.+...
T Consensus 211 ---------------s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 211 ---------------SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred ---------------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 355667778889999999999999999999999888877554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00026 Score=63.34 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccC
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 557 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~ 557 (760)
+-..|..+.+.|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+..+++++++..+-
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--------------- 110 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--------------- 110 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc---------------
Confidence 34568889999999999999999999999999999999999999999999999999999875333
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
++ ...+++...|.+|...|+-+.|..-|+.|-+++..
T Consensus 111 ---------tr------------tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 111 ---------TR------------TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred ---------ch------------HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 00 00578888999999999999999999999886655
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00017 Score=73.35 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=73.0
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
.|+.+.-++..|+|.+|...|..-++..|+.... ..+++.||.++..+|+++.|...| .
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~---~nA~yWLGe~~y~qg~y~~Aa~~f------------------~ 202 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT---PNAYYWLGESLYAQGDYEDAAYIF------------------A 202 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc---chhHHHHHHHHHhcccchHHHHHH------------------H
Confidence 3444444555559999999999999999998522 367777777777777777777777 5
Q ss_pred HHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 004336 466 QMLESDA---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 512 (760)
Q Consensus 466 ~al~~~p---~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~ 512 (760)
.++...| .-+++++.+|.+..++|+.++|-..|+++++..|+...+.
T Consensus 203 ~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 203 RVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 5555444 3356677777777777777777777777777666655443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.4e-05 Score=83.88 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=64.6
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 583 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~ 583 (760)
.+|+++.+++++|.+|+..|++++|+..|+++++++|++ .
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~----------------------------------------a 109 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP----------------------------------------D 109 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----------------------------------------h
Confidence 468899999999999999999999999999999999998 3
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 584 ---QALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 584 ---~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
.+|+++|.+|..+|++++|+.++++|++..
T Consensus 110 eA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 110 EAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 458999999999999999999999999864
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0012 Score=71.25 Aligned_cols=327 Identities=14% Similarity=0.061 Sum_probs=188.5
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC-
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP- 473 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~- 473 (760)
...+...+..-.+.+.....+.+ .++.+.+..++..|++.+|...+..-..... .....-|.
T Consensus 218 q~~~Lk~~krevK~vmn~a~~s~------~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~-----------~g~~~T~q~ 280 (696)
T KOG2471|consen 218 QTRNLKLAKREVKHVMNIAQDSS------MALLLKSQLEYAHGNHPKAMKLLLVSNIHKE-----------AGGTITPQL 280 (696)
T ss_pred HHHHHHHHHHhhhhhhhhcCCCc------HHHHHHHHHHHHhcchHHHHHHHHhcccccc-----------cCccccchh
Confidence 33466777777777777766665 7888889999999999999988721111000 00001111
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--------CC---------CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 474 -KGVLYFRQSLLLLRLNCPEAAMRSLQLARQ-H--------AA---------SDHERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 474 -~~~~~~~la~~~~~~g~~~~Ai~~l~kal~-~--------~p---------~~~~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
....|.++|-++++.|.|..+..+|.+|++ . .| ..-+.+|+.|..|...|+.-.|.+.|.+
T Consensus 281 ~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~ 360 (696)
T KOG2471|consen 281 SSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK 360 (696)
T ss_pred hhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence 234567788888888888888888888885 1 11 2346778888888888888888888888
Q ss_pred HHhhcCCh-HHHHHHHHHHHcccC----C-----CCcchh-----------------------------hhhHHHHHHhh
Q 004336 535 SIQMKRSF-EAFFLKAYALADSSQ----D-----SSCSST-----------------------------VVSLLEDALKC 575 (760)
Q Consensus 535 al~l~p~~-~a~~~la~~l~~~~~----~-----~~~~~~-----------------------------~~~~leeAl~~ 575 (760)
+......+ ..|.+++.+...... . +..+.. -.-.++-|.-+
T Consensus 361 av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vC 440 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVC 440 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHH
Confidence 88776666 777777655322110 0 000000 00001111111
Q ss_pred hHhh-----------------------------------------------------------ccH--HHHHHHHHHHHH
Q 004336 576 PSDR-----------------------------------------------------------LRK--GQALNNLGSVYV 594 (760)
Q Consensus 576 ~~~~-----------------------------------------------------------l~~--~~a~~~Lg~~y~ 594 (760)
...+ ++. ..++-+.+.+-.
T Consensus 441 Lrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L 520 (696)
T KOG2471|consen 441 LRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVEL 520 (696)
T ss_pred HHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 1111 000 235556677778
Q ss_pred HcCCHHHHHHHHHHHHhhcch-HHHHHHH-----HHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHH
Q 004336 595 DCGQLDLAADCYSNALKIRHT-RAHQGLA-----RVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADL 668 (760)
Q Consensus 595 ~~g~~~eA~~~~~~Al~~~~~-~a~~~La-----~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l 668 (760)
..|+.-.|+..-++.+....- .++-.|| .++....+..+|...+.--+--+.+...-|+.. .++.+.+--+.+
T Consensus 521 ~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~-Df~~~~~~~e~l 599 (696)
T KOG2471|consen 521 ELGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQE-DFDQWWKHTETL 599 (696)
T ss_pred HhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchh-hhhhhhcccccc
Confidence 889999999888888874333 4444444 444556666666666553221111111111111 000000000000
Q ss_pred HHHHhhCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHH-HHHHHHHHcCCHHHHHHHHH
Q 004336 669 EMVTQLDPL---------RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA--DLHLLH-LRAAFHEHTGDVLGALRDCR 736 (760)
Q Consensus 669 ~kal~l~p~---------~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p--~~~~~~-l~a~~~~~~g~~~~A~~~~~ 736 (760)
+.....+|. .....+++|.++.-+|++++|...+..|..+-+ .++.+. +.-.+-..+|+...|...++
T Consensus 600 ~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk 679 (696)
T KOG2471|consen 600 DPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLK 679 (696)
T ss_pred CCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 000001111 123568899999999999999999999988877 333444 44555667799999999888
Q ss_pred HHH
Q 004336 737 AAL 739 (760)
Q Consensus 737 ~aL 739 (760)
+.-
T Consensus 680 ~~~ 682 (696)
T KOG2471|consen 680 QCT 682 (696)
T ss_pred hcc
Confidence 753
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.012 Score=59.46 Aligned_cols=254 Identities=15% Similarity=0.072 Sum_probs=122.8
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
..+.++.+| .|..++..-++.-... .. ..-...+...|..+|++..-+.-+..
T Consensus 14 ~iRn~fY~G-------nyq~~ine~~~~~~~~-~~------~e~d~y~~raylAlg~~~~~~~eI~~------------- 66 (299)
T KOG3081|consen 14 NIRNYFYLG-------NYQQCINEAEKFSSSK-TD------VELDVYMYRAYLALGQYQIVISEIKE------------- 66 (299)
T ss_pred HHHHHHHhh-------HHHHHHHHHHhhcccc-ch------hHHHHHHHHHHHHccccccccccccc-------------
Confidence 344566666 8888777665553332 33 25556666777667766543332200
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA--SDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p--~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.......+...++.....-++.+.-+..+.+.+.... .+.-.+..-|.++...|++++|+........+
T Consensus 67 --------~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l- 137 (299)
T KOG3081|consen 67 --------GKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL- 137 (299)
T ss_pred --------ccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-
Confidence 0011112222333333333333333333333332222 22233344456677777777777666653222
Q ss_pred CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh--ccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh-
Q 004336 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--LRKGQALNNLGSVYVD----CGQLDLAADCYSNALKI- 612 (760)
Q Consensus 540 p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~--l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~- 612 (760)
++...-..++... .+.+-|.+..+++ +.....+..|+..+.. .+++.+|.-+|+..-..
T Consensus 138 ---E~~Al~VqI~lk~-----------~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~ 203 (299)
T KOG3081|consen 138 ---EAAALNVQILLKM-----------HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT 203 (299)
T ss_pred ---HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc
Confidence 2222222222222 2222222222222 1112222223332222 23455666666655552
Q ss_pred cch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004336 613 RHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 691 (760)
Q Consensus 613 ~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~ 691 (760)
.|+ ..+.+.+.++..+|++ ++|...++.++..+++++..+.++-.+-..
T Consensus 204 ~~T~~llnG~Av~~l~~~~~------------------------------eeAe~lL~eaL~kd~~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 204 PPTPLLLNGQAVCHLQLGRY------------------------------EEAESLLEEALDKDAKDPETLANLIVLALH 253 (299)
T ss_pred CCChHHHccHHHHHHHhcCH------------------------------HHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 222 5555666666666655 555555566666677777777777777777
Q ss_pred cCCHHHHHH-HHHHHHHcCCCcHHH
Q 004336 692 SHKENEAIA-ELSRAIAFKADLHLL 715 (760)
Q Consensus 692 ~g~~~eAi~-~l~kal~~~p~~~~~ 715 (760)
.|+..++.+ .+.+.....|.++..
T Consensus 254 ~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 254 LGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred hCCChHHHHHHHHHHHhcCCcchHH
Confidence 787766654 445555666776644
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00043 Score=62.00 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=84.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHH
Q 004336 512 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS 591 (760)
Q Consensus 512 ~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~ 591 (760)
+-..|..+...|+.+.|++.|.+++.+-|.. +.+|++.+.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~r----------------------------------------aSayNNRAQ 85 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPER----------------------------------------ASAYNNRAQ 85 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccc----------------------------------------hHhhccHHH
Confidence 3455778889999999999999999999988 889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 592 VYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 592 ~y~~~g~~~eA~~~~~~Al~~~~~------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
.+.-+|+.++|++-+++|+++..+ .++...|.+|..+|+-+.|...|+.+.+...
T Consensus 86 a~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 86 ALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 999999999999999999996433 7889999999999999999999998877665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.1e-05 Score=64.63 Aligned_cols=74 Identities=20% Similarity=0.332 Sum_probs=57.7
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHH
Q 004336 506 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQA 585 (760)
Q Consensus 506 p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a 585 (760)
|+...++.++|.+|..+|++++|+..|++++++.... +.... ..+.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~---------------------------~~a~~ 48 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL------GDDHP---------------------------DTANT 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT------TTHHH---------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH------CCCCH---------------------------HHHHH
Confidence 4456789999999999999999999999999762111 00000 01678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 586 LNNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 586 ~~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
+.++|.++...|++++|+++|++++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999875
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.4e-05 Score=70.43 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=62.8
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC----------
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLN----------CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH---------- 524 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g----------~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~---------- 524 (760)
+.....+|.+++.+++-|.++.++. -+++|+.-|++++.++|+..++++.+|.+|...+.
T Consensus 15 ea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~ 94 (186)
T PF06552_consen 15 EAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEE 94 (186)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHH
Confidence 7888899999999999999887763 45678888999999999999999999999987653
Q ss_pred -HHHHHHHHHHHHhhcCCh
Q 004336 525 -CEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 525 -~eeAl~~~~~al~l~p~~ 542 (760)
|++|..+|+++...+|++
T Consensus 95 ~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 95 YFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHhcCCCc
Confidence 788899999999999999
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0014 Score=71.58 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=97.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCC
Q 004336 481 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 560 (760)
Q Consensus 481 la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~ 560 (760)
+-.-..+..++.+-++.-++|++++|+.+++|..|+.- ......+|..+|+++++..... +.........
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~----- 243 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS---LGKSQFLQHH----- 243 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh---hchhhhhhcc-----
Confidence 33444567788888899999999999999999888752 2345678888888888654332 0000000000
Q ss_pred cchhhhhHHHHHHhhhHhhccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHH
Q 004336 561 CSSTVVSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 561 ~~~~~~~~leeAl~~~~~~l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~ 635 (760)
+..-+. ...+..+. ..+-..+|.+..+.|+.++|++.|+..++..|. .++.+|..++...+.+.++.
T Consensus 244 ------g~~~e~--~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 244 ------GHFWEA--WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred ------cchhhh--hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 000000 00111111 455677999999999999999999999986544 68999999999999999988
Q ss_pred HHHHHH
Q 004336 636 EEMTKL 641 (760)
Q Consensus 636 ~~l~~a 641 (760)
..+.+.
T Consensus 316 ~lL~kY 321 (539)
T PF04184_consen 316 ALLAKY 321 (539)
T ss_pred HHHHHh
Confidence 888764
|
The molecular function of this protein is uncertain. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.007 Score=70.17 Aligned_cols=90 Identities=18% Similarity=0.110 Sum_probs=73.6
Q ss_pred HccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 004336 435 HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 514 (760)
Q Consensus 435 ~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~ 514 (760)
..+++.+|.... .+.++..|+...+...-|..+.++|+.++|..+++..-...+++...+..
T Consensus 21 d~~qfkkal~~~------------------~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~ 82 (932)
T KOG2053|consen 21 DSSQFKKALAKL------------------GKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQF 82 (932)
T ss_pred hhHHHHHHHHHH------------------HHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHH
Confidence 346677777766 88888888888888888888888888888887777766667777788888
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 515 EGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 515 Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+-.+|.++|++++|...|++++..+|+.
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~e 110 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQKYPSE 110 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCcH
Confidence 8888888888888888888888888876
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=2e-05 Score=88.93 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=55.6
Q ss_pred cceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEec----------CCCCCHHHHHHHHhccccCcc
Q 004336 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLS----------ENNISPSGLRIISDFSVTGSL 247 (760)
Q Consensus 180 ~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~----------~~~i~~~~~~~~~~~~yt~~~ 247 (760)
.+.||||.||++.|||||.+|++.|++||.+|-....-|....|-+. =..|.|.+++.|+.|+||..+
T Consensus 557 s~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 557 SFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred ccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence 46899999999999999999999999999999765544443333332 127999999999999999976
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0036 Score=61.88 Aligned_cols=67 Identities=19% Similarity=0.129 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-------HH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 683 RYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-------LR-AAFHEHTGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 683 ~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-------l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
...|..-...++|.+|+..|++.....-++..+. +. +.++...+|.-.+...+++-.+++|...+..
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 3345555667888899999888887666665332 33 6667776888888888888888888876653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0057 Score=63.35 Aligned_cols=146 Identities=12% Similarity=-0.057 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHH
Q 004336 367 CFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 446 (760)
Q Consensus 367 ~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l 446 (760)
..+++..-.+....+.-...+.-..+.+.+|++.+|-...+++|...|.+. -++...-.++...|+...-...+
T Consensus 87 k~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~PtDl------la~kfsh~a~fy~G~~~~~k~ai 160 (491)
T KOG2610|consen 87 KKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDL------LAVKFSHDAHFYNGNQIGKKNAI 160 (491)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhCchhh------hhhhhhhhHHHhccchhhhhhHH
Confidence 344444444443333324455556677778899999999999999999995 55555556666667666555555
Q ss_pred hhhccccccCCcCcHHHHHHHHHh-CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 004336 447 QLYDRWSSVDDIGSLSVIYQMLES-DAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 522 (760)
Q Consensus 447 ~l~~~~~~~~d~~sl~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~ 522 (760)
++.+-. +|+. ..+.-.++..+.+.|-|++|.+.-++++++++.+.-+...++.++...
T Consensus 161 ------------------~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~ 222 (491)
T KOG2610|consen 161 ------------------EKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMN 222 (491)
T ss_pred ------------------HHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhc
Confidence 666655 5554 445556777888999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004336 523 SHCEEGLRKAEESI 536 (760)
Q Consensus 523 g~~eeAl~~~~~al 536 (760)
|++.++.+...+.-
T Consensus 223 ~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 223 GRHKEGKEFMYKTE 236 (491)
T ss_pred chhhhHHHHHHhcc
Confidence 99999988877654
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00019 Score=74.60 Aligned_cols=127 Identities=15% Similarity=0.191 Sum_probs=89.1
Q ss_pred EEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCcc--ceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHHHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC--EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIF 261 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~--~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~ll~~ 261 (760)
|.+.+++ +.|||+.++.-| .||+.||+|+|.|+.- ..+.++-...+....+.++.|.|+.+-+ |.++-+.++|-+
T Consensus 295 iql~~~~-RyP~hla~i~R~-eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~td-i~~~~A~dvll~ 371 (516)
T KOG0511|consen 295 IQLPEED-RYPAHLARILRV-EYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTD-IIFDVASDVLLF 371 (516)
T ss_pred ccccccc-cccHHHHHHHHH-HHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccccc-chHHHHhhHHHH
Confidence 4444444 499999999765 8999999999999652 2222221145677899999999999997 999999999999
Q ss_pred HhhhChH---hHHHHHHHHHHhhcCCHH---hHHHHHHHHHHhCchHHHHHHHHHHHhh
Q 004336 262 ANKFCCE---RLKDACDRKLASLVASRE---DAVELMGYAIEENSPVLAVSCLQVFLRE 314 (760)
Q Consensus 262 a~~~~~~---~~~~~c~~~l~~~~~~~~---~al~l~~~a~~~~~~~L~~~a~~~~l~~ 314 (760)
|+++-+. .|+.+-..-++... .+. +.+.+.+++-......|-.-+..+..++
T Consensus 372 ad~lal~~dr~Lkt~as~~itq~~-e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~h 429 (516)
T KOG0511|consen 372 ADKLALADDRLLKTAASAEITQWL-ELIDMYGVLDILEYCWDLVACRLEQFAETHEARH 429 (516)
T ss_pred hhHhhhhhhhhhhhhhhHHHHHHH-HHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9998765 26777766666544 233 3556666766666655544444444333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.014 Score=58.22 Aligned_cols=207 Identities=12% Similarity=0.050 Sum_probs=122.7
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+..|.+.+..|...++|++|...+.++.+-..++...+....++-..+.+......+.++..++
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~------------- 94 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLY------------- 94 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------------
Confidence 3445666677777777889999999999999777666655555567777777777888888888777
Q ss_pred cHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHH
Q 004336 460 SLSVIYQMLESD-----APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEG 528 (760)
Q Consensus 460 sl~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeA 528 (760)
+++.... |+.+..-...+--..+..++++|++.|++++.+-..+ .+.+...+.++....++++|
T Consensus 95 -----eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 95 -----EKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred -----HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 5554432 3434334444444455566666666666665542221 12334445556666666666
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 529 LRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSN 608 (760)
Q Consensus 529 l~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~ 608 (760)
-..+.+-....-.. ..+. .....+...-.+|+...+|..|..+|+.
T Consensus 170 a~a~lKe~~~~~~~-------~~y~---------------------------~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 170 ATAFLKEGVAADKC-------DAYN---------------------------SQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHHhhhHHHHH-------hhcc---------------------------cHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 55554433211000 0000 1134455555667777788899888888
Q ss_pred HHhhcc----h--HHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 609 ALKIRH----T--RAHQGLARVHFLKNNKTTAYEEMT 639 (760)
Q Consensus 609 Al~~~~----~--~a~~~La~~~~~~g~~~~A~~~l~ 639 (760)
.-.+.. . .++.+|-.. +..|+.++..+.+.
T Consensus 216 ~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 216 CSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLS 251 (308)
T ss_pred hhcCccccChHHHHHHHHHHHH-hccCCHHHHHHHHc
Confidence 666421 1 455555443 35566666555544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00063 Score=64.91 Aligned_cols=101 Identities=12% Similarity=-0.032 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCH---HHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNW---TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~---~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
-|+.|.+.++.....+|.+. ++++.-|.++..+.++ .++..++ .+++..++.++.++|+.
T Consensus 6 ~FE~ark~aea~y~~nP~Da------dnL~~WG~ALLELAqfk~g~es~~mi-----------edAisK~eeAL~I~P~~ 68 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDA------DNLTNWGGALLELAQFKQGPESKKMI-----------EDAISKFEEALKINPNK 68 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-H------HHHHHHHHHHHHHHHHS-HHHHHHHH-----------HHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHhCcHhH------HHHHHHHHHHHHHHhccCcchHHHHH-----------HHHHHHHHHHHhcCCch
Confidence 36789999999999999995 8888888887766555 3454444 22455679999999999
Q ss_pred HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCcHHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNC-----------PEAAMRSLQLARQHAASDHERLVYE 515 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~-----------~~~Ai~~l~kal~~~p~~~~a~~~L 515 (760)
.++++.+|++|...+. |++|..+|++|...+|++......|
T Consensus 69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999999887553 7888999999999999986554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00016 Score=53.09 Aligned_cols=42 Identities=21% Similarity=0.136 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 517 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~ 517 (760)
.+++.+|.+|.+.|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567788888888888888888888888888888888887775
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0068 Score=66.93 Aligned_cols=98 Identities=20% Similarity=0.150 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHH
Q 004336 659 CDRELTRADLEMVTQLDPLRV-YPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCR 736 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~-~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~ 736 (760)
|+...|++.+..|+...|... ....+||.++..-|..-+|-..+.+++.+....+..+ ..+..+..+.+.++|++.++
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 667788889999988888654 4578899999999999999999999999986666655 44888888899999999999
Q ss_pred HHHhcCCCcHHHHHHHHHhh
Q 004336 737 AALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 737 ~aL~l~P~~~~~l~~~~r~~ 756 (760)
+|++++|++++.-+-+.++.
T Consensus 701 ~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 701 QALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHhcCCCChhhHHHHHHHH
Confidence 99999999999877666554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0019 Score=64.76 Aligned_cols=141 Identities=14% Similarity=0.110 Sum_probs=116.9
Q ss_pred HHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 385 a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
..+.+..+++..|.|.-....+.++++.+|... ......+|.+.++.|+.+.|..+++.-++ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~-----p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek------------~ 241 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE-----PQLLSGLGRISMQIGDIKTAEKYFQDVEK------------V 241 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc-----HHHHHHHHHHHHhcccHHHHHHHHHHHHH------------H
Confidence 445566677788899999999999999996554 36667799999999999999999921111 1
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
..-+..-..+..+..+.+.+|.-++++..|...|.+.+..+|.++.+-.+.|.++...|+..+|++..+.+....|..
T Consensus 242 ~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 242 TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 222223345566778889999999999999999999999999999999999999999999999999999999999976
|
|
| >PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.9e-05 Score=64.43 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=70.6
Q ss_pred EEEEecCeEeehhHHHHh-cCCHHHHhhccCC---CCCCccceeEecCCCCCHHHHHHHHhcccc-CccCCCChhhHHHH
Q 004336 184 VVFRIHEEKIECDRQKFA-ALSAPFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPNLLLEI 258 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la-~~s~yf~amf~~~---~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt-~~~~~~~~~~v~~l 258 (760)
|+|-|||+.|..-+..|. ....+|..||.+. .......++-| +=+|..++.|++|..+ |++..-+...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5567999999874 55566677777 5799999999999999 78862247789999
Q ss_pred HHHHhhhChHhH-HHHH
Q 004336 259 LIFANKFCCERL-KDAC 274 (760)
Q Consensus 259 l~~a~~~~~~~~-~~~c 274 (760)
+.-|..|+++.+ ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999999 8877
|
They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C .... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.019 Score=57.83 Aligned_cols=220 Identities=13% Similarity=0.133 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCc-----H-HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------------ASD-----H-ERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~-------------p~~-----~-~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
...|...-.++.++..+++|..-+...-+++ |+. + .....-|.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3445555556677777777776665444333 211 1 11233466677788888887766655
Q ss_pred HhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 536 IQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 536 l~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
...-.+. -...... ...+..+..|++-+ ..+.+.+..++.-.|.|.-..+.+.+.++.+|+
T Consensus 149 ~~~V~~i------i~~~e~~----~~~ESsv~lW~KRl---------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e 209 (366)
T KOG2796|consen 149 KTVVSKI------LANLEQG----LAEESSIRLWRKRL---------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE 209 (366)
T ss_pred HHHHHHH------HHHHHhc----cchhhHHHHHHHHH---------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc
Confidence 4221100 0001110 00011111222111 667788888999999999999999999997755
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC----cHH--HHHHH----HhcCCHHHHHHHHHHHHhhCCCChHHH
Q 004336 616 ---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN----NAS--AYEKR----SEYCDRELTRADLEMVTQLDPLRVYPY 682 (760)
Q Consensus 616 ---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~----~~~--~~~~~----~~~~~~~~A~~~l~kal~l~p~~~~~~ 682 (760)
.....||++..+.||.+.|..++++.-+.... ... ..... -..+++..|...+.+.+..||.++.+.
T Consensus 210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence 67788999999999999999999965543331 111 11111 123678888888999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Q 004336 683 RYRAAVLMDSHKENEAIAELSRAIAFKADLH 713 (760)
Q Consensus 683 ~~La~~~~~~g~~~eAi~~l~kal~~~p~~~ 713 (760)
++.|.+++-.|+..+|++.++.++...|...
T Consensus 290 NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999999888765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.015 Score=65.69 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=25.2
Q ss_pred HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004336 713 HLLHLR-AAFHEHTGDVLGALRDCRAALSVDPND 745 (760)
Q Consensus 713 ~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~ 745 (760)
+..+++ +.++...|++++|-+.|-.+++++.-|
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 344555 777777799999999999999876544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.07 Score=53.01 Aligned_cols=133 Identities=13% Similarity=0.089 Sum_probs=82.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC----C-Cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 004336 480 RQSLLLLRLNCPEAAMRSLQLARQHA----A-SD-HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 553 (760)
Q Consensus 480 ~la~~~~~~g~~~~Ai~~l~kal~~~----p-~~-~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~ 553 (760)
.-|+.|.-.+++..|=..|-++-+.. . .+ +..+..-+.+| +.++.++|+..+++++++..+-
T Consensus 39 ~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~----------- 106 (288)
T KOG1586|consen 39 RAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDM----------- 106 (288)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhh-----------
Confidence 33555555666666666665554432 1 11 22333334443 4458888888888887653332
Q ss_pred cccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcch--------HHHHHHHHH
Q 004336 554 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-GQLDLAADCYSNALKIRHT--------RAHQGLARV 624 (760)
Q Consensus 554 ~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~-g~~~eA~~~~~~Al~~~~~--------~a~~~La~~ 624 (760)
|++..| +.-+..+|.+|... .++++|+.+|+++-+.-.. ..+...+..
T Consensus 107 -------------Grf~~a----------Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 107 -------------GRFTMA----------AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred -------------hHHHHH----------HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 333222 45566788888765 8999999999999873111 455666777
Q ss_pred HHHcCCHHHHHHHHHHHHHhccC
Q 004336 625 HFLKNNKTTAYEEMTKLIKKARN 647 (760)
Q Consensus 625 ~~~~g~~~~A~~~l~~al~~~~~ 647 (760)
....++|.+|++.|+++....-+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 77888888888888887665543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0087 Score=64.65 Aligned_cols=191 Identities=14% Similarity=0.057 Sum_probs=129.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhhc-CCh-HH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQH----AASDHERLVYEGWILYD---TSHCEEGLRKAEESIQMK-RSF-EA 544 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~----~p~~~~a~~~Lg~i~~~---~g~~eeAl~~~~~al~l~-p~~-~a 544 (760)
.++...++-..|....+|+.-++..+..-.+ -++.+.+.+.+|.++.. .|+.++|+..+..++... +.+ +.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3456667777899999999999988877666 45567788899999999 999999999999966544 333 77
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHHH
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLAR 623 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La~ 623 (760)
+...|.+|.+... . .-+......++|+.+|.++.+.+++ ..-.|++.
T Consensus 220 ~gL~GRIyKD~~~------------------------------~--s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~At 267 (374)
T PF13281_consen 220 LGLLGRIYKDLFL------------------------------E--SNFTDRESLDKAIEWYRKGFEIEPDYYSGINAAT 267 (374)
T ss_pred HHHHHHHHHHHHH------------------------------H--cCccchHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 8888888777400 0 0011222389999999999999877 77788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 624 VHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 703 (760)
Q Consensus 624 ~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~ 703 (760)
++...|...+....++++.-.. ..+ .-++-..-.-.+...+-.++.+..-.|++++|+..++
T Consensus 268 LL~~~g~~~~~~~el~~i~~~l-------~~l-----------lg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 268 LLMLAGHDFETSEELRKIGVKL-------SSL-----------LGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred HHHHcCCcccchHHHHHHHHHH-------HHH-----------HHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888887655554444432100 000 0001111112233444566777777889999999999
Q ss_pred HHHHcCCCcHH
Q 004336 704 RAIAFKADLHL 714 (760)
Q Consensus 704 kal~~~p~~~~ 714 (760)
+++...|..-.
T Consensus 330 ~~~~l~~~~W~ 340 (374)
T PF13281_consen 330 KAFKLKPPAWE 340 (374)
T ss_pred HHhhcCCcchh
Confidence 99888766543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00017 Score=49.61 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=24.6
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Q 004336 498 LQLARQHAASDHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 498 l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66777777777777777777777777777775
|
|
| >KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00094 Score=66.73 Aligned_cols=95 Identities=20% Similarity=0.313 Sum_probs=81.3
Q ss_pred EEEEecCeEeehhHHHHhcCCHHHHhhccCCCC-CCc-cceeEecCCCCCHHHHHHHHhccccCccCCC--ChhhHHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM-ESL-CEDIDLSENNISPSGLRIISDFSVTGSLNGV--TPNLLLEIL 259 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~-e~~-~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~--~~~~v~~ll 259 (760)
|.|-|||..|.-.+.-|--..-+|++||.+++. +.. ...|-| +=||.-+..|++|...|.+. + +...+.||+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~-LPe~~kel~El~ 82 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVD-LPESEKELKELL 82 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhccccc-CccchHHHHHHH
Confidence 568899999999999999999999999999873 332 345777 56999999999999988885 5 556777999
Q ss_pred HHHhhhChHhHHHHHHHHHHhhc
Q 004336 260 IFANKFCCERLKDACDRKLASLV 282 (760)
Q Consensus 260 ~~a~~~~~~~~~~~c~~~l~~~~ 282 (760)
.=|..|.+++|++.|..-+....
T Consensus 83 ~EA~fYlL~~Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 83 REAEFYLLDGLVELCQSAIARLI 105 (230)
T ss_pred HHHHHhhHHHHHHHHHHHhhhcc
Confidence 99999999999999999887654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.56 Score=55.36 Aligned_cols=140 Identities=20% Similarity=0.123 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhhhHHH-hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCC
Q 004336 379 DRQRLLAFHQLGCVRL-LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDD 457 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l-~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d 457 (760)
....+..++++|.+++ ...++++|+.++++++.+...+.....+..+...++.++.+.+... |...+
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l----------- 122 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNL----------- 122 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHH-----------
Confidence 5567888999999998 6799999999999998887665444455677788888988888777 88888
Q ss_pred cCcHHHHHHHHHhCCC---c-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCcHHH----HHHHHHHHHHCCCH
Q 004336 458 IGSLSVIYQMLESDAP---K-GVLYFRQ--SLLLLRLNCPEAAMRSLQLARQHA--ASDHER----LVYEGWILYDTSHC 525 (760)
Q Consensus 458 ~~sl~~~~~al~~~p~---~-~~~~~~l--a~~~~~~g~~~~Ai~~l~kal~~~--p~~~~a----~~~Lg~i~~~~g~~ 525 (760)
.+.++.... . ..-.+++ ...+...+++..|++.++...... ..++.+ ....+.++...+..
T Consensus 123 -------~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 123 -------DKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred -------HHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 666654433 2 1222222 223333489999999999988765 344443 33447777888888
Q ss_pred HHHHHHHHHHHh
Q 004336 526 EEGLRKAEESIQ 537 (760)
Q Consensus 526 eeAl~~~~~al~ 537 (760)
+++++..+++..
T Consensus 196 ~d~~~~l~~~~~ 207 (608)
T PF10345_consen 196 DDVLELLQRAIA 207 (608)
T ss_pred hhHHHHHHHHHH
Confidence 889888888743
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0029 Score=62.69 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=78.7
Q ss_pred HHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 385 a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
.+-..|.-++..++|..|+..|.+++.++|..+ ..+.+.+.++.+..+|+.+..-.
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~------~Y~tnralchlk~~~~~~v~~dc------------------ 67 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA------SYYTNRALCHLKLKHWEPVEEDC------------------ 67 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhcCCCcc------hhhhhHHHHHHHhhhhhhhhhhH------------------
Confidence 344557778888899999999999999999985 56666788888888888877766
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
.++++++|+....++.+|..+.....+++|+..++++..+
T Consensus 68 rralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 68 RRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888654
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0025 Score=63.33 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=86.9
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhC--------CCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhcccccc
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLS--------PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 455 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~--------P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~ 455 (760)
.++++-|+-++..|+|.+|...|+.|+..- |..+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~-------------------------------------- 220 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEP-------------------------------------- 220 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCCh--------------------------------------
Confidence 456777888888889999999999887542 3321
Q ss_pred CCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 456 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 456 ~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
+.++++.....++.+++.+++..|+|-++++.....+...|.+..+++..|.++...-+..+|...+.++
T Consensus 221 ----------eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 221 ----------EWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred ----------HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2223333445677788888888888888888888888888888888888888888888888888888888
Q ss_pred HhhcCCh
Q 004336 536 IQMKRSF 542 (760)
Q Consensus 536 l~l~p~~ 542 (760)
++++|..
T Consensus 291 L~ldpsl 297 (329)
T KOG0545|consen 291 LELDPSL 297 (329)
T ss_pred HhcChhh
Confidence 8888876
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.064 Score=58.07 Aligned_cols=114 Identities=14% Similarity=0.085 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCCHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES----DAPKGVLYFRQSLLLLR---LNCPEAAMR 496 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~Ai~ 496 (760)
+....+=..|...++|+.=+.+. +.+-.. -++...+.+.+|.++.+ .|+.++|+.
T Consensus 142 div~~lllSyRdiqdydamI~Lv------------------e~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~ 203 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLV------------------ETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQ 203 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHH------------------HHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHH
Confidence 44555666677888888777776 333333 35567788899999999 999999999
Q ss_pred HHHH-HHHhCCCcHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcc
Q 004336 497 SLQL-ARQHAASDHERLVYEGWILYD---------TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 555 (760)
Q Consensus 497 ~l~k-al~~~p~~~~a~~~Lg~i~~~---------~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~ 555 (760)
.+.. .....+.+++.+..+|.+|-+ ....++|+.+|.++.+++|+.-.-.+++.++...
T Consensus 204 il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 204 ILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA 272 (374)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc
Confidence 9999 445567889999999999864 3358899999999999998774444555555444
|
|
| >KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00067 Score=56.75 Aligned_cols=80 Identities=25% Similarity=0.402 Sum_probs=63.0
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCC--CCccceeEecCCCCCHHHHHHHHhcc-----ccCc------cCC
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFS-----VTGS------LNG 249 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~--e~~~~~v~~~~~~i~~~~~~~~~~~~-----yt~~------~~~ 249 (760)
|.|+- +|.+|-.-| -+|--|.-.||||.|... |...++|.|+ +|....|+.+.+|. ||+. .+
T Consensus 19 VkLvS~Ddhefiikr-e~AmtSgTiraml~gpg~~se~~~n~v~f~--di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~- 94 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKR-EHAMTSGTIRAMLSGPGVFSEAEKNEVYFR--DIPSHILEKVCEYLAYKVRYTNSSTEIPEFD- 94 (112)
T ss_pred eEeecCCCcEEEEee-hhhhhhhHHHHHHcCCccccccccceEEec--cchHHHHHHHHHHhhheeeeccccccCCCCC-
Confidence 55654 456676644 457779999999997654 5556799998 79999999999885 7877 23
Q ss_pred CChhhHHHHHHHHhhhCh
Q 004336 250 VTPNLLLEILIFANKFCC 267 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~ 267 (760)
|+++.++|||.+||.+.|
T Consensus 95 IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 95 IPPEMALELLMAANYLEC 112 (112)
T ss_pred CCHHHHHHHHHHhhhhcC
Confidence 899999999999998754
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.031 Score=58.08 Aligned_cols=160 Identities=15% Similarity=0.066 Sum_probs=122.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccCcH-------HHHHHHHhc
Q 004336 589 LGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKK-ARNNA-------SAYEKRSEY 658 (760)
Q Consensus 589 Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~-~~~~~-------~~~~~~~~~ 658 (760)
-+.+....|++.+|...+++.++-.|+ -++..--.+++..|+...-...+++++.. +++.+ .....+.+.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 355667789999999999999997777 45566677888999999999999998887 44331 122234466
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHcCCHHHHHH
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH-----LLHLRAAFHEHTGDVLGALR 733 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~-----~~~l~a~~~~~~g~~~~A~~ 733 (760)
|-+++|.+.-+++++++|.+..+....+.++...|++.++.+...+--..=.+.. .++.-+.++...+.|+.|++
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 8899999999999999999999999999999999999999998876533211111 23344888888899999999
Q ss_pred HHHHHH--hcCCCcHHH
Q 004336 734 DCRAAL--SVDPNDQEM 748 (760)
Q Consensus 734 ~~~~aL--~l~P~~~~~ 748 (760)
.|.+-+ ++..++..+
T Consensus 269 IyD~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHHHhhccchhh
Confidence 998654 345555533
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00038 Score=47.89 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=30.9
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004336 668 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700 (760)
Q Consensus 668 l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~ 700 (760)
|+++++++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999963
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.21 Score=54.35 Aligned_cols=161 Identities=13% Similarity=0.152 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CcHH--HHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIR------HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR-NNAS--AYE 653 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~------~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~-~~~~--~~~ 653 (760)
...+...+.+..+.|+++.|...+.++...+ .+.+.+..+.+....|+..+|+..++..+.... .... ...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 7789999999999999999999999998865 457888899999999999999999999888322 1100 000
Q ss_pred HHHhcCCHH--HHHHHHHHHHhhCCCChHHHHHHHHHHHHc------CCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHH
Q 004336 654 KRSEYCDRE--LTRADLEMVTQLDPLRVYPYRYRAAVLMDS------HKENEAIAELSRAIAFKADLHLLHLR-AAFHEH 724 (760)
Q Consensus 654 ~~~~~~~~~--~A~~~l~kal~l~p~~~~~~~~La~~~~~~------g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~ 724 (760)
.. ..+... .....-............++..+|...... +..++++..|.+++...|+....+.. +.++..
T Consensus 226 ~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 226 EL-KSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HH-hhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 00 000000 000000000000011134556667766666 88999999999999999988765522 222222
Q ss_pred c----C-------------CHHHHHHHHHHHHhcCCC
Q 004336 725 T----G-------------DVLGALRDCRAALSVDPN 744 (760)
Q Consensus 725 ~----g-------------~~~~A~~~~~~aL~l~P~ 744 (760)
. . -...|+..|-+++..+|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 305 LLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 1 1 124588899999999988
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00049 Score=74.78 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHH
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRA 737 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~ 737 (760)
+.++.|+..|.+|++++|+++..+.+++.++.+.+++..|+..+.+|++..|.....+++ |.+....+++.+|...|++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 456666666666667777666666666777777777777777777777777666655533 6666666777777777777
Q ss_pred HHhcCCCcHHHHHHH
Q 004336 738 ALSVDPNDQEMLELH 752 (760)
Q Consensus 738 aL~l~P~~~~~l~~~ 752 (760)
...+.|+++.+...+
T Consensus 98 ~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 98 VKKLAPNDPDATRKI 112 (476)
T ss_pred hhhcCcCcHHHHHHH
Confidence 777777777665544
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.53 Score=51.63 Aligned_cols=342 Identities=13% Similarity=0.015 Sum_probs=200.3
Q ss_pred HHHHHhhhHHHhcC--CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHH-HHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 384 LAFHQLGCVRLLRK--EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHML-VREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 384 ~a~~~lG~~~l~~g--~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~-l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
.++..++.-+...| +...++++++..+...|.+. .++.....+|. ++....+.+.|...+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~---veart~LqLg~lL~~yT~N~elAksHL-------------- 70 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFL---VEARTHLQLGALLLRYTKNVELAKSHL-------------- 70 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHH---HHHHHHHHHHHHHHHHhccHHHHHHHH--------------
Confidence 33444444444555 78899999999998887764 22334444554 556788999999988
Q ss_pred HHHHHHHHHhC---CC----cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCCCHHHH
Q 004336 461 LSVIYQMLESD---AP----KGVLYFRQSLLLLRLN-CPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEG 528 (760)
Q Consensus 461 l~~~~~al~~~---p~----~~~~~~~la~~~~~~g-~~~~Ai~~l~kal~~~p~~~----~a~~~Lg~i~~~~g~~eeA 528 (760)
+++.... |. ..+++..++.+|.... .+..|...+++++++..+.+ ...+.|++++....++..|
T Consensus 71 ----ekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA 146 (629)
T KOG2300|consen 71 ----EKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSA 146 (629)
T ss_pred ----HHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhH
Confidence 5555443 33 3456677888888877 88899999999999987765 3456789999999999999
Q ss_pred HHHHHHHHhh-cCChHHHHHHHHH--------------------------HHcccCCC---------------------C
Q 004336 529 LRKAEESIQM-KRSFEAFFLKAYA--------------------------LADSSQDS---------------------S 560 (760)
Q Consensus 529 l~~~~~al~l-~p~~~a~~~la~~--------------------------l~~~~~~~---------------------~ 560 (760)
++.+.-.... ++-...|+..... ......++ +
T Consensus 147 ~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~g 226 (629)
T KOG2300|consen 147 LELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPG 226 (629)
T ss_pred HHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 8874332211 1111222222111 11110010 0
Q ss_pred c---chhhhhHHHHHHhhhHhh---cc------H-HH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 004336 561 C---SSTVVSLLEDALKCPSDR---LR------K-GQ-------------ALNNLGSVYVDCGQLDLAADCYSNALKI-- 612 (760)
Q Consensus 561 ~---~~~~~~~leeAl~~~~~~---l~------~-~~-------------a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-- 612 (760)
. ......++.+.+...... .. + +. ++..--.--.-.|-+++|.++-++++..
T Consensus 227 q~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~e 306 (629)
T KOG2300|consen 227 QVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTE 306 (629)
T ss_pred chhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 0 001111111111111110 00 0 00 1111111112346677777777777762
Q ss_pred ----cc-h---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccC-------cHHHHHHHHhc----CCHHHH
Q 004336 613 ----RH-T---------RAHQGLARVHFLKNNKTTAYEEMTKLIKK---ARN-------NASAYEKRSEY----CDRELT 664 (760)
Q Consensus 613 ----~~-~---------~a~~~La~~~~~~g~~~~A~~~l~~al~~---~~~-------~~~~~~~~~~~----~~~~~A 664 (760)
.+ . ..+-.++.+-.-.|++.+|++....+.+- .|. .+.+...++.| +.++.|
T Consensus 307 klkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enA 386 (629)
T KOG2300|consen 307 KLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENA 386 (629)
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHH
Confidence 11 0 34455677778889999998887776553 332 12223333333 578999
Q ss_pred HHHHHHHHhhCCC-C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-----------HHHHHHHHHHHcCCHHH
Q 004336 665 RADLEMVTQLDPL-R--VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH-----------LLHLRAAFHEHTGDVLG 730 (760)
Q Consensus 665 ~~~l~kal~l~p~-~--~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~-----------~~~l~a~~~~~~g~~~~ 730 (760)
...|..|.++-.. + +....++|.+|.+.|+-+.-.+.++. +.|.+. ..+..|.+....+++.+
T Consensus 387 e~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnE 463 (629)
T KOG2300|consen 387 EFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNE 463 (629)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHH
Confidence 9999998876432 2 34456789999998876554444443 344421 12244777777899999
Q ss_pred HHHHHHHHHhcCCCcHHHHH
Q 004336 731 ALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 731 A~~~~~~aL~l~P~~~~~l~ 750 (760)
|.....+.|+.. +..+..+
T Consensus 464 aK~~l~e~Lkma-naed~~r 482 (629)
T KOG2300|consen 464 AKRFLRETLKMA-NAEDLNR 482 (629)
T ss_pred HHHHHHHHHhhc-chhhHHH
Confidence 999999999987 5555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00074 Score=49.50 Aligned_cols=42 Identities=12% Similarity=0.000 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHH
Q 004336 509 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAY 550 (760)
Q Consensus 509 ~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~ 550 (760)
+.++..+|.+|...|++++|++.|+++++.+|++ +++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578999999999999999999999999999999 88888764
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.022 Score=62.51 Aligned_cols=186 Identities=16% Similarity=0.141 Sum_probs=111.0
Q ss_pred HHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCC
Q 004336 520 YDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ 598 (760)
Q Consensus 520 ~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~ 598 (760)
-+..+.+.-++..++|++++|+. .+|..++.-... ...++.+.++++++-++..+.........|.
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~-------------Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEEEAS-------------TIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc-------------CHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 45678888899999999999999 888777643222 2344555555444333322222111112221
Q ss_pred HHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 004336 599 LDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPL 677 (760)
Q Consensus 599 ~~eA~~~~~~Al~~~~~-~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~ 677 (760)
.-++. ..+ ..++- .+...+|.+..+.|+.++|++.++.+++..|...
T Consensus 246 ~~e~~--~~R--dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~---------------------------- 293 (539)
T PF04184_consen 246 FWEAW--HRR--DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD---------------------------- 293 (539)
T ss_pred hhhhh--hcc--ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc----------------------------
Confidence 11110 000 01111 6677899999999999999998888887776321
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHH-H-cCC---------------HHHHHHHHHHHH
Q 004336 678 RVYPYRYRAAVLMDSHKENEAIAELSRAIAF-KADLHLLHLRAAFHE-H-TGD---------------VLGALRDCRAAL 739 (760)
Q Consensus 678 ~~~~~~~La~~~~~~g~~~eAi~~l~kal~~-~p~~~~~~l~a~~~~-~-~g~---------------~~~A~~~~~~aL 739 (760)
+..+..+|..++...+.|.++...+.+-=+. -|....+.+.+.++. + .|+ -..|.+...+|.
T Consensus 294 ~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAv 373 (539)
T PF04184_consen 294 NLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAV 373 (539)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHH
Confidence 2234566778888888888888887774322 244444433322211 1 111 245778899999
Q ss_pred hcCCCcHHHHH
Q 004336 740 SVDPNDQEMLE 750 (760)
Q Consensus 740 ~l~P~~~~~l~ 750 (760)
+.+|..+.-+-
T Consensus 374 efNPHVp~YLL 384 (539)
T PF04184_consen 374 EFNPHVPKYLL 384 (539)
T ss_pred HhCCCCchhhh
Confidence 99998887543
|
The molecular function of this protein is uncertain. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0013 Score=45.11 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0033 Score=62.32 Aligned_cols=92 Identities=13% Similarity=0.030 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCC
Q 004336 480 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDS 559 (760)
Q Consensus 480 ~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~ 559 (760)
..|+.++...+|+.|+..|.+++.++|..+..+.+.+.++++..+++.+....++++++.|+.
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~----------------- 77 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL----------------- 77 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH-----------------
Confidence 346667777889999999999999999999999999999999999999999999999999888
Q ss_pred CcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 560 SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 560 ~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
..+.+.+|........|++|+..+++|..
T Consensus 78 -----------------------vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 78 -----------------------VKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred -----------------------HHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 67778888888888888888888888865
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.003 Score=68.35 Aligned_cols=240 Identities=14% Similarity=0.103 Sum_probs=140.9
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccC------
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD------ 456 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~------ 456 (760)
-..+|..|.+++....+.+|++........-........ ...-...-.++....+.++|+.++.......+..
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~a-a~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~g 178 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSA-ASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVG 178 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 345677777777777888888877765543211110000 0122233445555666677776652211100000
Q ss_pred -CcC--------cHHHHHH-HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Q 004336 457 -DIG--------SLSVIYQ-MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 457 -d~~--------sl~~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~e 526 (760)
.+. +-...++ .+..++ ...+....-..|....+...+..-.+.+.....+.+.++...++.++..|++.
T Consensus 179 n~~~~nn~~kt~s~~aAe~s~~~a~~-k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~ 257 (696)
T KOG2471|consen 179 NHIPANNLLKTLSPSAAERSFSTADL-KLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHP 257 (696)
T ss_pred cccchhhhcccCCcchhcccchhhcc-chhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchH
Confidence 000 0000000 000001 11122222234556666777777777777777777888888888888888888
Q ss_pred HHHHHHHHH-HhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHH
Q 004336 527 EGLRKAEES-IQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADC 605 (760)
Q Consensus 527 eAl~~~~~a-l~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~ 605 (760)
+|.+.+... +...|.. ..-+. +.....|+++|.+++..|.|.-+..+
T Consensus 258 kA~KlL~~sni~~~~g~---~~T~q-----------------------------~~~cif~NNlGcIh~~~~~y~~~~~~ 305 (696)
T KOG2471|consen 258 KAMKLLLVSNIHKEAGG---TITPQ-----------------------------LSSCIFNNNLGCIHYQLGCYQASSVL 305 (696)
T ss_pred HHHHHHHhcccccccCc---cccch-----------------------------hhhheeecCcceEeeehhhHHHHHHH
Confidence 887766543 1111221 00000 00145778999999999999999999
Q ss_pred HHHHHh-----------hcch---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH
Q 004336 606 YSNALK-----------IRHT---------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS 656 (760)
Q Consensus 606 ~~~Al~-----------~~~~---------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~ 656 (760)
|.+|++ ..+. ..+|+.|..|...|++..|.++|.+++.....++.+|..++
T Consensus 306 F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 306 FLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLA 376 (696)
T ss_pred HHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 999995 1111 68899999999999999999999999998887777776654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0012 Score=45.12 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=30.6
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCC
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDY 416 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~ 416 (760)
|.+++.+|.+++..|++++|+..|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.018 Score=60.87 Aligned_cols=137 Identities=9% Similarity=0.034 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD-TSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~-~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
.+|..+.....+.+..+.|...|.+|++..+....+|...|.+-+. .++.+.|...|+.+++..|.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------------ 69 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------------ 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------------
Confidence 3677778888888889999999999997766778899999999777 566666999999999998888
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcC
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKN 629 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~g 629 (760)
...|......+...++.+.|...|++++..-+. ..|......-...|
T Consensus 70 ----------------------------~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 70 ----------------------------PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp ----------------------------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred ----------------------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 677777778888899999999999999984222 57778888888899
Q ss_pred CHHHHHHHHHHHHHhccCcHHHH
Q 004336 630 NKTTAYEEMTKLIKKARNNASAY 652 (760)
Q Consensus 630 ~~~~A~~~l~~al~~~~~~~~~~ 652 (760)
+.+......+++.+..|....+.
T Consensus 122 dl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 122 DLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp -HHHHHHHHHHHHHHTTTS-HHH
T ss_pred CHHHHHHHHHHHHHHhhhhhHHH
Confidence 99999999999998888654443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0013 Score=44.97 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 508 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~ 508 (760)
+.+|+++|.+|..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.36 Score=50.87 Aligned_cols=217 Identities=16% Similarity=0.060 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhhhHHHhcC-CHHHHHHHHHHHHhhC-------CCCcch-hchHHHHHHHHHHHHHccCHHHHHHHHhhh
Q 004336 379 DRQRLLAFHQLGCVRLLRK-EYDEAEHLFEAILTLS-------PDYRMF-EGRVAASQLHMLVREHIDNWTIADCWLQLY 449 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g-~~~eA~~~~~~aL~l~-------P~~~~~-~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~ 449 (760)
....+..+|..|.-.+.++ ++++|..++++++..- ...+.. ..+...+..++.++...+.++......
T Consensus 31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~--- 107 (278)
T PF08631_consen 31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKAL--- 107 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHH---
Confidence 3467888999999999999 9999999999998872 122222 344567778888888777665433322
Q ss_pred ccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH-HHHCCCHHH
Q 004336 450 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-SDHERLVYEGWI-LYDTSHCEE 527 (760)
Q Consensus 450 ~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p-~~~~a~~~Lg~i-~~~~g~~ee 527 (760)
..+..+-...|+.+..++..-.+..+.++.+++.+.+.+++..-+ .....-..+..+ .........
T Consensus 108 ------------~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~ 175 (278)
T PF08631_consen 108 ------------NALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPEL 175 (278)
T ss_pred ------------HHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHH
Confidence 112555555677777775555566668999999999999987644 222221112222 112234456
Q ss_pred HHHHHHHHHhhc--CChHHHHHHHHHHH---cccCCCCcchhhhhHHHHHHhhhHhh----ccH------HHHHHHHHHH
Q 004336 528 GLRKAEESIQMK--RSFEAFFLKAYALA---DSSQDSSCSSTVVSLLEDALKCPSDR----LRK------GQALNNLGSV 592 (760)
Q Consensus 528 Al~~~~~al~l~--p~~~a~~~la~~l~---~~~~~~~~~~~~~~~leeAl~~~~~~----l~~------~~a~~~Lg~~ 592 (760)
|...+...+... |....+.....+.. .+..........+..+++.+....+. +.+ ...+.+.|..
T Consensus 176 a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~ 255 (278)
T PF08631_consen 176 AAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKK 255 (278)
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 777777766532 22211333322222 11111111111223333333322222 211 2344456777
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 004336 593 YVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 593 y~~~g~~~eA~~~~~~Al 610 (760)
.++.++|++|+++|+-++
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 778888888888887665
|
It is also involved in sporulation []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.016 Score=61.26 Aligned_cols=133 Identities=9% Similarity=-0.101 Sum_probs=106.4
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHH-ccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREH-IDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~-~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
|..+.......+..+.|...|.++++..+... ..|...|.+... .++.+.|...|
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~------~vy~~~A~~E~~~~~d~~~A~~If------------------ 59 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTY------HVYVAYALMEYYCNKDPKRARKIF------------------ 59 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T------HHHHHHHHHHHHTCS-HHHHHHHH------------------
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHhCCCHHHHHHHH------------------
Confidence 34444445555579999999999986555443 778888888666 56666699999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~---~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
+.++...|.+...|......+...|+.+.|...|++++..-|... ..|......-...|+.+....+.+++.+..|+
T Consensus 60 e~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 60 ERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999998877665 57777778888899999999999999999888
Q ss_pred h
Q 004336 542 F 542 (760)
Q Consensus 542 ~ 542 (760)
.
T Consensus 140 ~ 140 (280)
T PF05843_consen 140 D 140 (280)
T ss_dssp S
T ss_pred h
Confidence 6
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.052 Score=56.04 Aligned_cols=128 Identities=17% Similarity=0.074 Sum_probs=87.6
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 390 GCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 390 G~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
+.-....|++.+|...|..++...|++. ++...++.++...|+.+.|...+ ...-.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~------~~~~~la~~~l~~g~~e~A~~iL------------------~~lP~ 196 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENS------EAKLLLAECLLAAGDVEAAQAIL------------------AALPL 196 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccc------hHHHHHHHHHHHcCChHHHHHHH------------------HhCcc
Confidence 3334455599999999999999999996 89999999999999999998877 11111
Q ss_pred hCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 470 SDAPKG-VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 470 ~~p~~~-~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
...++. ......-..+.+.....+. ..+++.+..+|++.++.+.+|..+...|+.++|++.+-..++.+..+
T Consensus 197 ~~~~~~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 197 QAQDKAAHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 111110 0000011222222222222 23455567789999999999999999999999988888888876655
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.96 Score=53.36 Aligned_cols=229 Identities=13% Similarity=0.026 Sum_probs=135.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~---------~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
++......+-......++++|.....++...-+. .++.....|.+....|++++|++..+.++..-|.+..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3455556666777788888888877776554332 1233344567777788888888888888876665500
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--------H
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------R 616 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--------~ 616 (760)
..+..++..+|.+..-.|++++|..+...+.+.... .
T Consensus 494 -----------------------------------~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~ 538 (894)
T COG2909 494 -----------------------------------RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALW 538 (894)
T ss_pred -----------------------------------hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 011456777888888899999999888888775222 3
Q ss_pred HHHHHHHHHHHcCCHHHHHH--HHHHHH----HhccCcHHHHHHH----HhcCCHHHHHHHHHHHHhh----CCC--ChH
Q 004336 617 AHQGLARVHFLKNNKTTAYE--EMTKLI----KKARNNASAYEKR----SEYCDRELTRADLEMVTQL----DPL--RVY 680 (760)
Q Consensus 617 a~~~La~~~~~~g~~~~A~~--~l~~al----~~~~~~~~~~~~~----~~~~~~~~A~~~l~kal~l----~p~--~~~ 680 (760)
+....+.++..+|+...|.. .+...- ...|..+.....+ ..+.+.+.+.....+.++. .|. ...
T Consensus 539 ~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~ 618 (894)
T COG2909 539 SLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSR 618 (894)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHH
Confidence 44555777888884333332 222211 1122111111111 1112234444444444333 222 222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHH------HHHHHHHHcCCHHHHHHHHHH
Q 004336 681 -PYRYRAAVLMDSHKENEAIAELSRAIAFKADL--HLLH------LRAAFHEHTGDVLGALRDCRA 737 (760)
Q Consensus 681 -~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~--~~~~------l~a~~~~~~g~~~~A~~~~~~ 737 (760)
.+..++.+++..|++++|...+......-.+. ...+ .+..++...||+.+|.....+
T Consensus 619 ~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 619 LALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 23478999999999999999988876543322 2222 335566677999998888777
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.13 Score=51.60 Aligned_cols=204 Identities=13% Similarity=0.005 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 548 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~------~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~l 548 (760)
+..|..-+..|...++|++|..++.++.+-..++. .++-..|.+......+.|+..+|+++..+.-.+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~------ 104 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC------ 104 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh------
Confidence 45566666677777777777777777764433221 223333444444444444444444444322111
Q ss_pred HHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc----h----HHHHH
Q 004336 549 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH----T----RAHQG 620 (760)
Q Consensus 549 a~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~----~----~a~~~ 620 (760)
|..+- +..-...+--..+..++++|++.|++++.+-. . +.+..
T Consensus 105 ------------------Gspdt-----------AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 105 ------------------GSPDT-----------AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred ------------------CCcch-----------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 11111 11111222223455667777777777766311 1 34444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004336 621 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700 (760)
Q Consensus 621 La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~ 700 (760)
.++++.+..++++|-..+.+-..... -....|.....+.....++.-..+|..|..
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~------------------------~~~~y~~~~k~~va~ilv~L~~~Dyv~aek 211 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAAD------------------------KCDAYNSQCKAYVAAILVYLYAHDYVQAEK 211 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHH------------------------HHhhcccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55666666666555554443211100 011123333344444455666678999999
Q ss_pred HHHHHHHcC----CCcHHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 004336 701 ELSRAIAFK----ADLHLLH-LRAAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 701 ~l~kal~~~----p~~~~~~-l~a~~~~~~g~~~~A~~~~~~a 738 (760)
.++...++. |++.... -.-..|.. ||.++....+..-
T Consensus 212 c~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 212 CYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEIKKVLSSP 253 (308)
T ss_pred HhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHHHHHHcCh
Confidence 888765542 2222222 22344555 8888777666543
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0072 Score=62.76 Aligned_cols=124 Identities=17% Similarity=0.174 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHH--hHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHH
Q 004336 364 KTVCFLERLLESAE--TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 441 (760)
Q Consensus 364 ~~~~lle~l~~~a~--~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~ 441 (760)
....-|+.+.-.+. +.-..|..|-.-|+-|+..++|..|+..|.+.|+..-.++++
T Consensus 60 ~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl---------------------- 117 (390)
T KOG0551|consen 60 PDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL---------------------- 117 (390)
T ss_pred ccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH----------------------
Confidence 33344555544432 245688889999999999999999999999999987666521
Q ss_pred HHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004336 442 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 521 (760)
Q Consensus 442 A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~ 521 (760)
++.+|.+.|-+....|+|..|+....+++.++|.+..+++.-+.+++.
T Consensus 118 --------------------------------navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 118 --------------------------------NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred --------------------------------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 123444555555666666666666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHhhcCC
Q 004336 522 TSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 522 ~g~~eeAl~~~~~al~l~p~ 541 (760)
+.++.+|..+.+..+.++-+
T Consensus 166 Le~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHhhhhhhhHH
Confidence 66666666666666555433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0019 Score=44.05 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.+++.+|.+++.+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.14 Score=59.43 Aligned_cols=262 Identities=16% Similarity=0.039 Sum_probs=178.7
Q ss_pred CCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCC-----CHHHHHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRL-----NCPEAAMRSLQLARQH-----AASDHERLVYEGWILYDTS-----HCEEGLRKAEESI 536 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~-----g~~~~Ai~~l~kal~~-----~p~~~~a~~~Lg~i~~~~g-----~~eeAl~~~~~al 536 (760)
-.+..+.+.+|.+|..- .+.+.|+.+|+.+.+. .-..+.+.+.+|.+|.... +.+.|+.+|.++-
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 45677788888887764 7999999999999771 1125567889999998853 7788999999998
Q ss_pred hhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--HHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 004336 537 QMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--GQALNNLGSVYVD----CGQLDLAADCYSNAL 610 (760)
Q Consensus 537 ~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~--~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al 610 (760)
..... .+.+.+|.++.... .......|.++|..+-+. ..+.+.+|.+|.. ..+...|..+|.++.
T Consensus 321 ~~g~~-~a~~~lg~~~~~g~--------~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA 391 (552)
T KOG1550|consen 321 ELGNP-DAQYLLGVLYETGT--------KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAA 391 (552)
T ss_pred hcCCc-hHHHHHHHHHHcCC--------ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHH
Confidence 76433 58888998888861 124567888888888544 7888888888865 357899999999999
Q ss_pred hhcchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccC----cHHHHHHHH-hc-------CCHHHHHHHHHHHHhhCCC
Q 004336 611 KIRHTRAHQGLARVHFLK-NNKTTAYEEMTKLIKKARN----NASAYEKRS-EY-------CDRELTRADLEMVTQLDPL 677 (760)
Q Consensus 611 ~~~~~~a~~~La~~~~~~-g~~~~A~~~l~~al~~~~~----~~~~~~~~~-~~-------~~~~~A~~~l~kal~l~p~ 677 (760)
+.++..+...++..+... ++++.+...+....+..-. ++....... .. .+...+...+.++.. ..
T Consensus 392 ~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g 469 (552)
T KOG1550|consen 392 EKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QG 469 (552)
T ss_pred HccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--cc
Confidence 988776666666665544 7777777766665544331 111111111 00 123344444444433 44
Q ss_pred ChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCcH
Q 004336 678 RVYPYRYRAAVLMDS----HKENEAIAELSRAIAFKADLHLLHLRAAFHEHT---GDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 678 ~~~~~~~La~~~~~~----g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~---g~~~~A~~~~~~aL~l~P~~~ 746 (760)
+..+...+|.+|..- .+++.|...|.++.... ....+..+..++.- .....|.++|.++.+.+.+..
T Consensus 470 ~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~ 543 (552)
T KOG1550|consen 470 NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAY 543 (552)
T ss_pred CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhh
Confidence 566777788777654 35899999999998766 33333335555542 126889999999988776544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.27 Score=58.04 Aligned_cols=278 Identities=13% Similarity=0.031 Sum_probs=165.3
Q ss_pred HHHHHHHccCHHHHHHHHhhhcccccc-----CCcCcHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 429 HMLVREHIDNWTIADCWLQLYDRWSSV-----DDIGSLSVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 501 (760)
Q Consensus 429 lg~l~~~~g~~~~A~~~l~l~~~~~~~-----~d~~sl~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~Ai~~l~ka 501 (760)
+|.+....+-+++|-..+..++..... +++++ +.++.+. .-+.+.+|..+|.+.++.|...+|++.|-++
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~---ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGS---LDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhh---HHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 345555566667777666444432110 11222 2222221 1356889999999999999999999999664
Q ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc
Q 004336 502 RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 581 (760)
Q Consensus 502 l~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~ 581 (760)
+++..+...-.+..+.|+|++-+.++..+-+.-.....-..+-.+|+.. +++.+..+...-. .
T Consensus 1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt-----------~rl~elE~fi~gp-N 1193 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKT-----------NRLTELEEFIAGP-N 1193 (1666)
T ss_pred -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHh-----------chHHHHHHHhcCC-C
Confidence 6777888888999999999999999998887644431122233334443 2222222211100 0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCH
Q 004336 582 KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDR 661 (760)
Q Consensus 582 ~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~ 661 (760)
..-....|.-.+..|.|+.|.-+|... .-|..|+..+...|+|..|.+..+++-... .|......+-
T Consensus 1194 -~A~i~~vGdrcf~~~~y~aAkl~y~~v------SN~a~La~TLV~LgeyQ~AVD~aRKAns~k-----tWK~VcfaCv- 1260 (1666)
T KOG0985|consen 1194 -VANIQQVGDRCFEEKMYEAAKLLYSNV------SNFAKLASTLVYLGEYQGAVDAARKANSTK-----TWKEVCFACV- 1260 (1666)
T ss_pred -chhHHHHhHHHhhhhhhHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHhhhccchh-----HHHHHHHHHh-
Confidence 122334678888889999888888654 346678888888999988888877653221 1211100000
Q ss_pred HHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 004336 662 ELTRADLEMVTQLD-PLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAAL 739 (760)
Q Consensus 662 ~~A~~~l~kal~l~-p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL 739 (760)
+.-.-.+.+..-++ --.+.-+-.+..-|...|-++|-+..++.++.+...+-... -.+.+|.+ =++++-.+.++-.+
T Consensus 1261 d~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk-ykp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK-YKPEKMMEHLKLFW 1339 (1666)
T ss_pred chhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 00000011111111 01123345567788899999999999999987765444333 22666665 67777777766554
Q ss_pred h
Q 004336 740 S 740 (760)
Q Consensus 740 ~ 740 (760)
.
T Consensus 1340 s 1340 (1666)
T KOG0985|consen 1340 S 1340 (1666)
T ss_pred H
Confidence 3
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.072 Score=51.70 Aligned_cols=66 Identities=20% Similarity=0.114 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 004336 682 YRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747 (760)
Q Consensus 682 ~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~ 747 (760)
-..+|.+..++|++++|+..++..-...=......+++.++...|+.++|+..|+++++.+++.+.
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 356899999999999999988765432112223448899999999999999999999998765543
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0021 Score=69.95 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=91.5
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
..+.-++.-++|+.|+..|.+++.++|+.. ..+.+.+.++.+.+++..|+.-+ .++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca------~~~anRa~a~lK~e~~~~Al~Da------------------~ka 64 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCA------IYFANRALAHLKVESFGGALHDA------------------LKA 64 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcce------eeechhhhhheeechhhhHHHHH------------------Hhh
Confidence 344555666799999999999999999996 33444667778888888888877 999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004336 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 519 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~ 519 (760)
++.+|....+|++.|.+....+++.+|...|++.....|+++.+...+-.+-
T Consensus 65 ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 65 IELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred hhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877665543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.045 Score=54.66 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
..++..-|+-++..|+|.+|...|+.|+.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~ 206 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAII 206 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHH
Confidence 57888899999999999999999999875
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.47 Score=55.19 Aligned_cols=145 Identities=10% Similarity=-0.088 Sum_probs=104.6
Q ss_pred HHHHHHHHhhhHHHhc-----CCHHHHHHHHHHHHhh-----CCCCcchhchHHHHHHHHHHHHHcc-----CHHHHHHH
Q 004336 381 QRLLAFHQLGCVRLLR-----KEYDEAEHLFEAILTL-----SPDYRMFEGRVAASQLHMLVREHID-----NWTIADCW 445 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~-----g~~~eA~~~~~~aL~l-----~P~~~~~~~~~~a~~~lg~l~~~~g-----~~~~A~~~ 445 (760)
....+.+.+|.+++.- .|.+.|+.+|+.+... .-.++ .+.+.+|.+|.+.. +.+.|..+
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~------~a~~~lg~~Y~~g~~~~~~d~~~A~~~ 315 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP------PAQYGLGRLYLQGLGVEKIDYEKALKL 315 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC------ccccHHHHHHhcCCCCccccHHHHHHH
Confidence 3455667777776653 6899999999998761 11132 56778899988743 56778888
Q ss_pred HhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 004336 446 LQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLARQHAASDHERLVYEGWILYD- 521 (760)
Q Consensus 446 l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~- 521 (760)
+ .++... +++.+.+.+|.++..-. ++..|.++|..|.+. .+..+.+++|.+|..
T Consensus 316 ~------------------~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 316 Y------------------TKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred H------------------HHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 8 555544 56778889999888766 678999999998765 467888999988875
Q ss_pred ---CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 522 ---TSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 522 ---~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
..+...|..+|+++.+.. ...+.+.++..+..
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~ 408 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEY 408 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHH
Confidence 458899999999999887 22444444444433
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.45 Score=50.41 Aligned_cols=169 Identities=17% Similarity=0.108 Sum_probs=108.7
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHc----cCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 390 GCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHI----DNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 390 G~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~----g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
+......+++..|..++..+-.. .. ..+...++..+... .+..+|..|+ .
T Consensus 48 ~~~~~~~~~~~~a~~~~~~a~~~--~~------~~a~~~l~~~y~~g~gv~~~~~~A~~~~------------------~ 101 (292)
T COG0790 48 GAGSAYPPDYAKALKSYEKAAEL--GD------AAALALLGQMYGAGKGVSRDKTKAADWY------------------R 101 (292)
T ss_pred cccccccccHHHHHHHHHHhhhc--CC------hHHHHHHHHHHHhccCccccHHHHHHHH------------------H
Confidence 33445666888888888877651 11 24566666666443 3466677777 4
Q ss_pred HHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCC-------CHHHHHHHHH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASD-HERLVYEGWILYDTS-------HCEEGLRKAE 533 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~----~g~~~~Ai~~l~kal~~~p~~-~~a~~~Lg~i~~~~g-------~~eeAl~~~~ 533 (760)
.......+.+.+.+|.+|.. ..++.+|..+|+++.+..-.. ..+.+.+|..|..-+ +...|...|.
T Consensus 102 --~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 102 --CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred --HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 23335566777778887776 447788888888887764333 234666676666542 1113444444
Q ss_pred HHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004336 534 ESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNA 609 (760)
Q Consensus 534 ~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~A 609 (760)
++-... ...+...+|.+|.. ..++.+|..+|.++
T Consensus 180 ~aa~~~------------------------------------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~A 217 (292)
T COG0790 180 KAAELG------------------------------------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKA 217 (292)
T ss_pred HHHHhc------------------------------------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence 433221 15677778877754 45899999999999
Q ss_pred HhhcchHHHHHHHHHHHHcC
Q 004336 610 LKIRHTRAHQGLARVHFLKN 629 (760)
Q Consensus 610 l~~~~~~a~~~La~~~~~~g 629 (760)
-+.++....+.++ +++..|
T Consensus 218 a~~g~~~a~~~~~-~~~~~g 236 (292)
T COG0790 218 AEQGDGAACYNLG-LMYLNG 236 (292)
T ss_pred HHCCCHHHHHHHH-HHHhcC
Confidence 9988788888888 777766
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.19 Score=52.09 Aligned_cols=150 Identities=14% Similarity=0.004 Sum_probs=91.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH--HH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA--YA 551 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la--~~ 551 (760)
..+.-+..+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-....+....-..+ ..
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 4455667778889999999999999999999999999999999999999999999887765432222221111111 00
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHH
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFL 627 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~ 627 (760)
+... .+ .....+....+.......++-+.++..+...|++++|.+.+-..++.+.. .+...+-.++..
T Consensus 213 l~qa-a~-------~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 213 LEQA-AA-------TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHH-hc-------CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 0000 00 01111111111111222566667777777777777777777666664322 444455555555
Q ss_pred cCCH
Q 004336 628 KNNK 631 (760)
Q Consensus 628 ~g~~ 631 (760)
.|.-
T Consensus 285 ~g~~ 288 (304)
T COG3118 285 FGPA 288 (304)
T ss_pred cCCC
Confidence 5533
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.038 Score=52.04 Aligned_cols=62 Identities=26% Similarity=0.074 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.+...++..+...|++++|+..+++++..+|.+-.++..+..+|...|+..+|+..|++..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999998754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.12 Score=58.66 Aligned_cols=119 Identities=20% Similarity=0.001 Sum_probs=86.8
Q ss_pred cCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004336 596 CGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQ 673 (760)
Q Consensus 596 ~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~ 673 (760)
....+.|.+.++...+..|. -.++..|+++...|+.++|++.+++++........+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql---------------------- 303 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQL---------------------- 303 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhH----------------------
Confidence 45677888888888886666 556677888888999988888888776322211110
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH--HHHHHHHHcCCH-------HHHHHHHHHHHh
Q 004336 674 LDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH--LRAAFHEHTGDV-------LGALRDCRAALS 740 (760)
Q Consensus 674 l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~--l~a~~~~~~g~~-------~~A~~~~~~aL~ 740 (760)
..-.++.+|+++.-+++|++|...+.+..+.+.-....+ +.|.++...|+. ++|.+.++++-.
T Consensus 304 ----~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 304 ----HHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ----HHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 123467788899999999999999999888777666544 558888888888 788888877754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.78 Score=48.57 Aligned_cols=188 Identities=15% Similarity=0.031 Sum_probs=115.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcc
Q 004336 487 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCS 562 (760)
Q Consensus 487 ~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~ 562 (760)
..+++..|...+.++-.. .+..+...++..|.. ..+..+|..+|+.+.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~-------------------- 108 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGL-------------------- 108 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--ccc--------------------
Confidence 455666666666666542 223555666666554 2345666666663332 222
Q ss_pred hhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcchHH---HHHHHHHHHHcCCHHHHH
Q 004336 563 STVVSLLEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRA---HQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 563 ~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~~~~~a---~~~La~~~~~~g~~~~A~ 635 (760)
+.+.+++|.+|.. ..++.+|..+|++|.+.++..+ .+.++..|..-+ ...+.
T Consensus 109 --------------------~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~~~~ 167 (292)
T COG0790 109 --------------------AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QALAV 167 (292)
T ss_pred --------------------HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hhhcc
Confidence 4556666666665 4488999999999999887766 777887776653 11011
Q ss_pred HHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC
Q 004336 636 EEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD----SHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 636 ~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~----~g~~~eAi~~l~kal~~~p~ 711 (760)
.. +...|...|.++-... ++.+...+|.+|.. ..++.+|..+|.++-+...
T Consensus 168 ~~----------------------~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~- 222 (292)
T COG0790 168 AY----------------------DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD- 222 (292)
T ss_pred cH----------------------HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-
Confidence 00 1134555555555544 56777788877755 3478899999999988776
Q ss_pred cHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCCc
Q 004336 712 LHLLHLRAAFHEHTG---------------DVLGALRDCRAALSVDPND 745 (760)
Q Consensus 712 ~~~~~l~a~~~~~~g---------------~~~~A~~~~~~aL~l~P~~ 745 (760)
....+..+.++. .| +...|...+.++-...+..
T Consensus 223 ~~a~~~~~~~~~-~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 223 GAACYNLGLMYL-NGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHHHHHh-cCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 232233343333 34 8888888888887765543
|
|
| >KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0024 Score=63.78 Aligned_cols=57 Identities=26% Similarity=0.235 Sum_probs=43.5
Q ss_pred eEeehhHHHHhcCCHHHHhhccCCCCCC---------ccceeEecCCCCCHHHHH-HHHhccccCccC
Q 004336 191 EKIECDRQKFAALSAPFSAMLNGSFMES---------LCEDIDLSENNISPSGLR-IISDFSVTGSLN 248 (760)
Q Consensus 191 ~~~~~hr~~la~~s~yf~amf~~~~~e~---------~~~~v~~~~~~i~~~~~~-~~~~~~yt~~~~ 248 (760)
.+|.||+.|.|+.|++||.++....+|. ..++|.+.+ -|=|..+. .++.|.||.+++
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lD 327 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLD 327 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccc
Confidence 4799999999999999999986555443 345677774 56565554 567899999995
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=2.6 Score=48.22 Aligned_cols=87 Identities=9% Similarity=-0.013 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--
Q 004336 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-- 582 (760)
Q Consensus 505 ~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-- 582 (760)
-|++...+-.+|..+...|..++|.+.|-+-- .|.- + + .... .+.+|.+|.+..++..-+
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka-A---v-~tCv-----------~LnQW~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA-A---V-HTCV-----------ELNQWGEAVELAQRFQLPQV 909 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH-H---H-HHHH-----------HHHHHHHHHHHHHhccchhH
Confidence 47777777888888888888888887775432 1221 0 0 0111 126777777777766222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~A 609 (760)
.......+.-+...++.-+|++.++++
T Consensus 910 ~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 910 QTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 333333455566677788888877776
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.36 E-value=2.4 Score=47.40 Aligned_cols=143 Identities=16% Similarity=0.015 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhcch---HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcc---CcHHHH--HHHHhcCCHHHHHHH
Q 004336 599 LDLAADCYSNALKIRHT---RAHQGLARVHFLKN---NKTTAYEEMTKLIKKAR---NNASAY--EKRSEYCDRELTRAD 667 (760)
Q Consensus 599 ~~eA~~~~~~Al~~~~~---~a~~~La~~~~~~g---~~~~A~~~l~~al~~~~---~~~~~~--~~~~~~~~~~~A~~~ 667 (760)
-++|..+|++++..-.. ..++.++.--...- +++.-...+++++.+.. .....- +......-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 57888888888773211 23333333222222 25555566666665443 222211 111111223556667
Q ss_pred HHHHHhhCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhc
Q 004336 668 LEMVTQLDPLRVYPYRYRAA-VLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 668 l~kal~l~p~~~~~~~~La~-~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
|.++-+........+..-|. -|...++..-|...|+-.+...++.+.+-+. ..++...++-..|...|++++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 77766554443344444443 3567889999999999999999999977766 67777788888999999999876
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.064 Score=60.90 Aligned_cols=121 Identities=17% Similarity=0.060 Sum_probs=96.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhh
Q 004336 487 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 566 (760)
Q Consensus 487 ~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~ 566 (760)
.....+.|.+.++...+..|+..-.++..|.++...|+.++|+..|++++......
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~------------------------ 300 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW------------------------ 300 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH------------------------
Confidence 35677889999999999999999999999999999999999999999988433222
Q ss_pred hHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch---HHHHHHHHHHHHcCCH-------HHHHH
Q 004336 567 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNK-------TTAYE 636 (760)
Q Consensus 567 ~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---~a~~~La~~~~~~g~~-------~~A~~ 636 (760)
.++ ..-.++.+|.++.-+.+|++|..+|.+..+.+.- -..+..|-++...|+. ++|..
T Consensus 301 ~Ql------------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~ 368 (468)
T PF10300_consen 301 KQL------------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEE 368 (468)
T ss_pred HhH------------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHH
Confidence 000 0356788999999999999999999999886443 5566778899999988 66666
Q ss_pred HHHHHHH
Q 004336 637 EMTKLIK 643 (760)
Q Consensus 637 ~l~~al~ 643 (760)
.+.++-.
T Consensus 369 l~~~vp~ 375 (468)
T PF10300_consen 369 LFRKVPK 375 (468)
T ss_pred HHHHHHH
Confidence 6665543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.42 Score=54.35 Aligned_cols=234 Identities=12% Similarity=-0.019 Sum_probs=121.3
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 469 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---------HERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
+.+| ++.+|..+|......-.++.|...|-+.-.. |.- ..--...+.+-.--|++++|.+.|-.+-+.+
T Consensus 687 EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 687 EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 3344 6889999998877777777777776553211 111 0011233555556789999998886543222
Q ss_pred CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR------LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 540 p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~------l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
-..+.+..+ +.|-...+.++.. ....+++.++|..+.....|++|.++|...-.
T Consensus 765 LAielr~kl------------------gDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-- 824 (1189)
T KOG2041|consen 765 LAIELRKKL------------------GDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-- 824 (1189)
T ss_pred hhHHHHHhh------------------hhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 111222222 2333333333332 11167899999999999999999999977532
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 004336 614 HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSH 693 (760)
Q Consensus 614 ~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g 693 (760)
.-++..+++...++++-....+.+-+..+-.+.+.......|--++|.+.|-+-. .|.- -.......+
T Consensus 825 ----~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka------Av~tCv~Ln 892 (1189)
T KOG2041|consen 825 ----TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA------AVHTCVELN 892 (1189)
T ss_pred ----hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH------HHHHHHHHH
Confidence 2356667777777755544444443333333333333333355555555443211 1110 011333445
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHH
Q 004336 694 KENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 694 ~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~a 738 (760)
++.+|.+..++- .-|.-..+..+ +.-+...++..+|++.++++
T Consensus 893 QW~~avelaq~~--~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 893 QWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 555555544331 11222222211 22233336667777766665
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.025 Score=58.92 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
|++..|+.+..+++.++|.+..+++.-|.++..+.++++|..+.+..+.
T Consensus 133 ~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 133 GNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 3444555555555555555555555555555555555555555554433
|
|
| >KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0046 Score=65.98 Aligned_cols=118 Identities=20% Similarity=0.146 Sum_probs=92.6
Q ss_pred CeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH---HHHHHHhhhC
Q 004336 190 EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL---EILIFANKFC 266 (760)
Q Consensus 190 ~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~---~ll~~a~~~~ 266 (760)
++.|.+|++++++.|+-|++|+..+..+...+.+++. +.++..++++..|.|+..-. .+.+... .+++++.+..
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~--d~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLL--EEKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhcccccccc--ccchhhHhhhceEEEeccch-HHHHHhhcCChhhhhccccc
Confidence 4569999999999999999999998888877778775 78999999999999997664 4555554 8889999999
Q ss_pred hHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHH
Q 004336 267 CERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVF 311 (760)
Q Consensus 267 ~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~ 311 (760)
...++..|...+.+.+ ...++......+..+....+...+..+.
T Consensus 186 ~~~lk~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 229 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLI-ETLNVSQSLQEASNYDLKEAKSALTYVI 229 (297)
T ss_pred cHHHHHHHHHHHHHHH-HhhhhcccHHHhchhHHHHHHHHHHHHH
Confidence 9999999999999887 3344444445555555555555555544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.42 Score=46.50 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 588 NLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 588 ~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
..|.++...|+-++|...|++++..
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3455555555555555555555554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.013 Score=39.87 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 511 a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
+++.+|.++..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555554
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.31 Score=45.72 Aligned_cols=112 Identities=18% Similarity=0.149 Sum_probs=74.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHH
Q 004336 514 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVY 593 (760)
Q Consensus 514 ~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y 593 (760)
..|......|+.+.++..+++++.+.... .+... ... .-.......+... -..+...++..+
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~--------~l~~~-----~~~---~W~~~~r~~l~~~--~~~~~~~l~~~~ 72 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGD--------FLPDL-----DDE---EWVEPERERLREL--YLDALERLAEAL 72 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SS--------TTGGG-----TTS---TTHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCC--------CCCCC-----Ccc---HHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34555667788899999999998875433 00000 000 0000000000000 056778889999
Q ss_pred HHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 594 VDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIK 643 (760)
Q Consensus 594 ~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~ 643 (760)
...|++++|+..+++++..+|. .++..+..+|...|+..+|++.|++...
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999887 7999999999999999999999997654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.012 Score=40.11 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=29.8
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCC
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDY 416 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~ 416 (760)
|.+++.+|.++...|++++|...|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4578899999999999999999999999999853
|
... |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0071 Score=63.15 Aligned_cols=93 Identities=12% Similarity=0.008 Sum_probs=79.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcc
Q 004336 483 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCS 562 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~ 562 (760)
.-.+..|.+++|++.|..++.++|..+..+...+.++..+++...|+..+..++.++|+.
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-------------------- 181 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-------------------- 181 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc--------------------
Confidence 344567889999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 563 STVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 563 ~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
+.-|-..|.....+|++++|...+..+.+++..
T Consensus 182 --------------------a~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 182 --------------------AKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred --------------------ccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 555566677777788888888888888886554
|
|
| >smart00512 Skp1 Found in Skp1 protein family | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.025 Score=50.08 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=59.9
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCCCC-ccceeEecCCCCCHHHHHHHHhccccCccC-------------
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMES-LCEDIDLSENNISPSGLRIISDFSVTGSLN------------- 248 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~e~-~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~------------- 248 (760)
|+|.. +|.+|...+.+. ..|.-++.|+.+.-.+. ....|.|+ +|+..+|+.|++|.+--+-.
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 56654 678899988865 68899999997533222 22589997 79999999999998743211
Q ss_pred -----CCChhhHHHHHHHHhhhCh
Q 004336 249 -----GVTPNLLLEILIFANKFCC 267 (760)
Q Consensus 249 -----~~~~~~v~~ll~~a~~~~~ 267 (760)
.++.+.+.+|+.|||.|++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0566789999999998764
|
Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0033 Score=65.55 Aligned_cols=87 Identities=21% Similarity=0.177 Sum_probs=48.7
Q ss_pred HHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004336 626 FLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 626 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~ 701 (760)
+..|.++.|++.+..+|++.|..+.+|..+. ...+...|+.++..++.++|+.+..|-..+.+...+|++++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3456666666666666666665555554442 224455555555555555555555555555555555555555555
Q ss_pred HHHHHHcCCCc
Q 004336 702 LSRAIAFKADL 712 (760)
Q Consensus 702 l~kal~~~p~~ 712 (760)
+..+.+++-+.
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 55555554443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.83 E-value=5.6 Score=46.98 Aligned_cols=313 Identities=15% Similarity=0.072 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHH-HccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC--CCcH
Q 004336 399 YDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVRE-HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKG 475 (760)
Q Consensus 399 ~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~-~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~--p~~~ 475 (760)
...|+.+++.+++ ++.-+ ...++.+...+|.++. ...+++.|..++ .+++... ++-.
T Consensus 37 I~~ai~CL~~~~~-~~~l~-p~~ea~~~l~la~iL~~eT~n~~~Ae~~L------------------~k~~~l~~~~~~~ 96 (608)
T PF10345_consen 37 IATAIKCLEAVLK-QFKLS-PRQEARVRLRLASILLEETENLDLAETYL------------------EKAILLCERHRLT 96 (608)
T ss_pred HHHHHHHHHHHhc-cCCCC-HHHHHHHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhccccchH
Confidence 4678899998886 22222 2233456667777665 889999999999 7776655 3322
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---c-HHHHHH-H-HHHHHHCCCHHHHHHHHHHHHhhc--CChH
Q 004336 476 ----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---D-HERLVY-E-GWILYDTSHCEEGLRKAEESIQMK--RSFE 543 (760)
Q Consensus 476 ----~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~---~-~~a~~~-L-g~i~~~~g~~eeAl~~~~~al~l~--p~~~ 543 (760)
...+.++.++.+.+... |...+++.++.... . ....+. + ...+...+++..|+..++...... +.+.
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 33456678888888777 99999999887544 1 111222 2 233333489999999999988765 3332
Q ss_pred HHHHHHHHH-HcccCCCCcchhhhhHHHHHHhhhHhh-----cc--HHHHHHHHH--HHHHHcCCHHHHHHHHHHHHh--
Q 004336 544 AFFLKAYAL-ADSSQDSSCSSTVVSLLEDALKCPSDR-----LR--KGQALNNLG--SVYVDCGQLDLAADCYSNALK-- 611 (760)
Q Consensus 544 a~~~la~~l-~~~~~~~~~~~~~~~~leeAl~~~~~~-----l~--~~~a~~~Lg--~~y~~~g~~~eA~~~~~~Al~-- 611 (760)
..+.++... .............+..+.++....... .. ...++..+- .++...|+++.+.+..++.-.
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~ 255 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFL 255 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 222222111 111112233444555565554444432 11 123333332 245567777776665544322
Q ss_pred ----hcc--------------------------h------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH
Q 004336 612 ----IRH--------------------------T------------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 649 (760)
Q Consensus 612 ----~~~--------------------------~------------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~ 649 (760)
..+ . -.+.--|......|..+.|.+++.++++.-....
T Consensus 256 ~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 256 DEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred HHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 011 1 0112223444555666577777776655432111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC------cHHHH-HHH
Q 004336 650 SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK---AD------LHLLH-LRA 719 (760)
Q Consensus 650 ~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~---p~------~~~~~-l~a 719 (760)
. -.......-...+...... ..--......+.++...-.+++..|...++.+.... |. .+..+ +.|
T Consensus 336 ~-~~~~~~~~sl~~~~~~~~~---~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~g 411 (608)
T PF10345_consen 336 I-KSPSAPSESLSEASERIQW---LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLG 411 (608)
T ss_pred c-cCCCCCCcCHHHHHHhHHH---HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHH
Confidence 0 0000000000000000000 000011345677888889999999998888776543 22 12223 558
Q ss_pred HHHHHcCCHHHHHHHHH
Q 004336 720 AFHEHTGDVLGALRDCR 736 (760)
Q Consensus 720 ~~~~~~g~~~~A~~~~~ 736 (760)
.++...|+.+.|...|.
T Consensus 412 l~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 412 LYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 88889999999999998
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.77 Score=49.51 Aligned_cols=149 Identities=15% Similarity=0.003 Sum_probs=98.8
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNC------------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
..+.+.+..+|.+..+|..+....-..-. .+.-+..|++|++.+|++...+..+-.+.....+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34688999999999999998875554432 456778999999999999999888888888888999999
Q ss_pred HHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH---------------HHHHHHHHHHH
Q 004336 530 RKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---------------GQALNNLGSVY 593 (760)
Q Consensus 530 ~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~---------------~~a~~~Lg~~y 593 (760)
+.+++++..+|+. ..|...-...... ............+.+++..+...... ..++..+....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~-~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSN-FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999987 5544332222221 11122233344444444444333110 34445555555
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 004336 594 VDCGQLDLAADCYSNALK 611 (760)
Q Consensus 594 ~~~g~~~eA~~~~~~Al~ 611 (760)
.+.|-.+.|+..++..++
T Consensus 165 ~~aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLE 182 (321)
T ss_pred HHCCchHHHHHHHHHHHH
Confidence 666666666666666665
|
|
| >PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.012 Score=61.58 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=75.5
Q ss_pred eEeehhHHHHhcCCHHHHhhccCCCCCC-ccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHHHHHHHhhhChHh
Q 004336 191 EKIECDRQKFAALSAPFSAMLNGSFMES-LCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCER 269 (760)
Q Consensus 191 ~~~~~hr~~la~~s~yf~amf~~~~~e~-~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~ll~~a~~~~~~~ 269 (760)
+.|.|.|-.|-+-=.||+..+.....++ ..++|+|+ -.-+..+++=|++|+....-. ++++||-.||.-++.++++.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 5799999999999999999996533222 23467776 246899999999999987775 99999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 004336 270 LKDACDRKLASLV 282 (760)
Q Consensus 270 ~~~~c~~~l~~~~ 282 (760)
|++.|-.|+..++
T Consensus 92 Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 92 LVEECLQYCHDHM 104 (317)
T ss_pred HHHHHHHHHHHhH
Confidence 9999999997654
|
This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.56 E-value=3 Score=42.58 Aligned_cols=227 Identities=13% Similarity=0.044 Sum_probs=149.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcch
Q 004336 485 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-HCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 563 (760)
Q Consensus 485 ~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g-~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~ 563 (760)
+.+...-..|++.-+.++.++|.+-.+|.+.-.++..++ +..+-+.++.+.+.-+|.+
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN--------------------- 111 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN--------------------- 111 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc---------------------
Confidence 334455667888888888888888887777666665543 5667778888888888877
Q ss_pred hhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 564 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLD-LAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTK 640 (760)
Q Consensus 564 ~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~-eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~ 640 (760)
-++|...-.+....|++. .-++..+.++..+.. .+|...-.+...-+.++.-+.+..+
T Consensus 112 -------------------YQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 112 -------------------YQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred -------------------hhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 556666666666666666 566777777775433 6788888888888889999999999
Q ss_pred HHHhccCcHHHHHHHHhc-----C-----CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-
Q 004336 641 LIKKARNNASAYEKRSEY-----C-----DRELTRADLEMVTQLDPLRVYPYRYRAAVLMD-SH--KENEAIAELSRAI- 706 (760)
Q Consensus 641 al~~~~~~~~~~~~~~~~-----~-----~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~-~g--~~~eAi~~l~kal- 706 (760)
+++.+-.+.++++.+.-. | ..+.-+....+.+.+.|.+..+|.+|..++.. .| ...+-.......+
T Consensus 173 Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~ 252 (318)
T KOG0530|consen 173 LLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYL 252 (318)
T ss_pred HHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhh
Confidence 999988777777765311 1 23455667788899999999999999988886 44 1333333333333
Q ss_pred HcCCCcHHHH-HH------HHHHHHcCCHH---HHHHHHHHHH-hcCCCcHHHHHH
Q 004336 707 AFKADLHLLH-LR------AAFHEHTGDVL---GALRDCRAAL-SVDPNDQEMLEL 751 (760)
Q Consensus 707 ~~~p~~~~~~-l~------a~~~~~~g~~~---~A~~~~~~aL-~l~P~~~~~l~~ 751 (760)
...-..+.+. .. .....+.+.-+ +|...|+..- +.||-....+..
T Consensus 253 ~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~ 308 (318)
T KOG0530|consen 253 QLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRH 308 (318)
T ss_pred ccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 2222223222 11 12222334444 5666776554 677766555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.56 E-value=3 Score=45.17 Aligned_cols=150 Identities=14% Similarity=0.086 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHH
Q 004336 509 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNN 588 (760)
Q Consensus 509 ~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~ 588 (760)
...+...+.+....|+++.|...+.++...++.... ..+.+...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~------------------------------------~~~~v~~e 189 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES------------------------------------LLPRVFLE 189 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC------------------------------------CCcchHHH
Confidence 345555666666666666666666666555432200 01456666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcch-----------------------------HHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 589 LGSVYVDCGQLDLAADCYSNALKIRHT-----------------------------RAHQGLARVHFLKNNKTTAYEEMT 639 (760)
Q Consensus 589 Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----------------------------~a~~~La~~~~~~g~~~~A~~~l~ 639 (760)
.+.++...|+..+|+..++..++.... ......+.++...|++....
T Consensus 190 ~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~---- 265 (352)
T PF02259_consen 190 YAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL---- 265 (352)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh----
Confidence 777788888888888888777661100 11122233333333332211
Q ss_pred HHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-----------------HHHHHHHH
Q 004336 640 KLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK-----------------ENEAIAEL 702 (760)
Q Consensus 640 ~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~-----------------~~eAi~~l 702 (760)
+ .....+..+++...|.++++.+|....+|+.+|..+...=. ...|+..|
T Consensus 266 ------------~-~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y 332 (352)
T PF02259_consen 266 ------------Y-SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY 332 (352)
T ss_pred ------------c-cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence 0 00123566888888889999998888888888776654311 13366666
Q ss_pred HHHHHcCCC
Q 004336 703 SRAIAFKAD 711 (760)
Q Consensus 703 ~kal~~~p~ 711 (760)
-+++...+.
T Consensus 333 ~~al~~~~~ 341 (352)
T PF02259_consen 333 LKALSLGSK 341 (352)
T ss_pred HHHHhhCCC
Confidence 666666665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.024 Score=56.81 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=50.3
Q ss_pred eEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCcc---ceeEecCCCCCHHHHHHHHhccccCccC
Q 004336 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC---EDIDLSENNISPSGLRIISDFSVTGSLN 248 (760)
Q Consensus 183 dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~---~~v~~~~~~i~~~~~~~~~~~~yt~~~~ 248 (760)
||-+.....-||+||++||+.||+|+.+.+.+- |... -+|++- |++-+++++++.|.|||.-.
T Consensus 132 dldiiFkeTcfpahRA~laaRCpffK~l~nsd~-e~~ae~i~dik~a--g~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 132 DLDIIFKETCFPAHRAFLAARCPFFKILANSDE-EPEAEDICDIKFA--GFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred cceeeeeeccchHHHHHHHhhCcchhhhccCCC-Ccchhhhhhhhhh--ccChHHHHHHHHHHHhcccc
Confidence 666666677899999999999999999887642 2222 245664 89999999999999999985
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.48 E-value=5 Score=44.05 Aligned_cols=134 Identities=14% Similarity=0.168 Sum_probs=77.8
Q ss_pred HHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 385 a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
.+...|.++-.++++.+|...|.++.....+.+....+ +.+..+-.-..-..+.+.-...+
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lke-Evl~grilnAffl~nld~Me~~l------------------ 68 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKE-EVLGGRILNAFFLNNLDLMEKQL------------------ 68 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHH-HHHhhHHHHHHHHhhHHHHHHHH------------------
Confidence 34566888888889999998888887766555422221 23322222223333333333333
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------HHHH--HHHHHHHHHCCCHHHHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------------HERL--VYEGWILYDTSHCEEGL 529 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~-------------~~a~--~~Lg~i~~~~g~~eeAl 529 (760)
...-+..|..+....-.|....+.+++.+|++.+....+..... ++.+ .-.+..+...|++.++.
T Consensus 69 ~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR 148 (549)
T PF07079_consen 69 MELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGR 148 (549)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHH
Confidence 22233446666677777778888888888887776555441111 0111 22466677788888888
Q ss_pred HHHHHHHh
Q 004336 530 RKAEESIQ 537 (760)
Q Consensus 530 ~~~~~al~ 537 (760)
..+++.+.
T Consensus 149 ~iLn~i~~ 156 (549)
T PF07079_consen 149 AILNRIIE 156 (549)
T ss_pred HHHHHHHH
Confidence 77777664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.48 E-value=6.1 Score=44.96 Aligned_cols=178 Identities=11% Similarity=-0.089 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc----HHHHHHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN----ASAYEKRS 656 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~--~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~----~~~~~~~~ 656 (760)
...|......-...|+++...-.|++++-+ ..+..|...++.....|+.+-|...+..+.+..-.. .-.+....
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 345666667777899999999999999874 344889999999999999999998888877765422 22222222
Q ss_pred -hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH---HHHHHHHHcCCCcHHH---HHH--HHHHHHcCC
Q 004336 657 -EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAI---AELSRAIAFKADLHLL---HLR--AAFHEHTGD 727 (760)
Q Consensus 657 -~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi---~~l~kal~~~p~~~~~---~l~--a~~~~~~g~ 727 (760)
..|+++.|...+++..+.-|+...+-...+.+..+.|+.+.+. ..+.....-.-+.... ... -..+.-.++
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC
Confidence 2479999999999998888999888888888899999999988 4444444332222211 122 233444589
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHhhccCC
Q 004336 728 VLGALRDCRAALSVDPNDQEMLELHSRVYSHEP 760 (760)
Q Consensus 728 ~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~~~~ 760 (760)
.+.|...+.++++..|++...+..+.++.-.+|
T Consensus 457 ~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 457 ADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 999999999999999999998888877765443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.41 E-value=8.1 Score=45.96 Aligned_cols=194 Identities=14% Similarity=0.058 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---------KGVLYFRQSLLLLRLNCPEAA 494 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A 494 (760)
......+.......++.+|..++ .++...-+. .+...-..|.+....|++++|
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li------------------~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a 477 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLI------------------ARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEA 477 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHH------------------HHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHH
Confidence 33445667777888999998887 333322221 123344567788899999999
Q ss_pred HHHHHHHHHhCCCcH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-----HHH--HHHHHHHHcccCCCCcc
Q 004336 495 MRSLQLARQHAASDH-----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-----EAF--FLKAYALADSSQDSSCS 562 (760)
Q Consensus 495 i~~l~kal~~~p~~~-----~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-----~a~--~~la~~l~~~~~~~~~~ 562 (760)
++..+.++..-|.+. .++..+|.+..-.|++++|..+.+++.+....+ ..| ...+.++..+
T Consensus 478 ~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~q------- 550 (894)
T COG2909 478 EDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQ------- 550 (894)
T ss_pred HHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHh-------
Confidence 999999999877654 457788999999999999999999998875443 222 2224455555
Q ss_pred hhhhhH--HHHHHhhhHhh----ccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc------h---HHHHHHHH
Q 004336 563 STVVSL--LEDALKCPSDR----LRK----GQALNNLGSVYVDCGQLDLAADCYSNALKIRH------T---RAHQGLAR 623 (760)
Q Consensus 563 ~~~~~~--leeAl~~~~~~----l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~------~---~a~~~La~ 623 (760)
|. +++....+... +.. .-.....+.++...-+++.+..-....++... . .+++.|+.
T Consensus 551 ----Gq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~ 626 (894)
T COG2909 551 ----GQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAE 626 (894)
T ss_pred ----hHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHH
Confidence 32 22222222211 111 11222233333333337777766666666321 1 34458999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcc
Q 004336 624 VHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 624 ~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
+++..|+.++|...+........
T Consensus 627 l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 627 LEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999988776554
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.88 Score=49.78 Aligned_cols=145 Identities=13% Similarity=-0.016 Sum_probs=95.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------C------------CCcH---HHHHHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------------A------------ASDH---ERLVYE 515 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--------------~------------p~~~---~a~~~L 515 (760)
...+..+|.+.+.+..++.++..+|+.+.|.+.+++|+-. + +.|. .+.+..
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 4455677888888888888888888888888888777521 1 1122 234556
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH
Q 004336 516 GWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD 595 (760)
Q Consensus 516 g~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~ 595 (760)
...+.+.|-+..|+++.+-.+.++|.. ++..+...+-....+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~--------------------------------------DP~g~ll~ID~~ALr 151 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDE--------------------------------------DPLGVLLFIDYYALR 151 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCC--------------------------------------CcchhHHHHHHHHHh
Confidence 677888999999999999999999984 011222223333344
Q ss_pred cCCHHHHHHHHHHHHh--hc-----chHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhccC
Q 004336 596 CGQLDLAADCYSNALK--IR-----HTRAHQGLARVHFLKNNK---------------TTAYEEMTKLIKKARN 647 (760)
Q Consensus 596 ~g~~~eA~~~~~~Al~--~~-----~~~a~~~La~~~~~~g~~---------------~~A~~~l~~al~~~~~ 647 (760)
.++|+--++.++.... .. -+..-+..+.+++..++. +.|...+.+++...|.
T Consensus 152 s~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 152 SRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred cCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 4455444444444332 10 124556777788888887 8899999999998883
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.041 Score=53.72 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=74.3
Q ss_pred ceeEEEEecCeEeehhHHHHhcCCH--HHHhhccCC---CCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhH
Q 004336 181 LRNVVFRIHEEKIECDRQKFAALSA--PFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (760)
Q Consensus 181 ~~dv~~~~~~~~~~~hr~~la~~s~--yf~amf~~~---~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v 255 (760)
.+=|.+.+||+.|---+-.|...-| ..-+||.+. -.|+++.-|-| +-||.-++-|++|...|+|...+.-++
T Consensus 8 ~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~ 84 (302)
T KOG1665|consen 8 SSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDC 84 (302)
T ss_pred hhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccH
Confidence 3557888999888766665555533 567899863 24555566777 579999999999999999987888899
Q ss_pred HHHHHHHhhhChHhHHHHHHH
Q 004336 256 LEILIFANKFCCERLKDACDR 276 (760)
Q Consensus 256 ~~ll~~a~~~~~~~~~~~c~~ 276 (760)
.++|+.|+.|++-.|++.-+.
T Consensus 85 lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 85 LGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHHhhHHhhHhHHhHHhh
Confidence 999999999999999987666
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.028 Score=39.11 Aligned_cols=27 Identities=44% Similarity=0.721 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
++.+||.+|...|+|++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777777777777777777554
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.055 Score=41.23 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 716 HLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 716 ~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
++.+..+.++|+|++|.++.+.+|+++|+|..+..+...+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 34455566667777777777777777777776666655544
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.23 Score=45.26 Aligned_cols=79 Identities=23% Similarity=0.189 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-cCCCcH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004336 679 VYPYRYRAAVLMDSH---KENEAIAELSRAIA-FKADLH--LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 752 (760)
Q Consensus 679 ~~~~~~La~~~~~~g---~~~eAi~~l~kal~-~~p~~~--~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~ 752 (760)
....+++|+++.... +..+.+..++..+. -.|+.. .+++.+.-+.+.|+|+.|+++.+..|+.+|+|.+++.+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 456788999998765 46678899999986 444443 555778888888999999999999999999999999888
Q ss_pred HHhhc
Q 004336 753 SRVYS 757 (760)
Q Consensus 753 ~r~~~ 757 (760)
+.+.+
T Consensus 112 ~~ied 116 (149)
T KOG3364|consen 112 ETIED 116 (149)
T ss_pred HHHHH
Confidence 77764
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.032 Score=37.45 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 511 RLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 511 a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444555555555555555555555544443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.97 E-value=9.6 Score=50.00 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc-------------H
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN-------------A 649 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~-------------~ 649 (760)
+..|.+.|.+....|+++.|..+.-+|.+...+.+....|......|+...|+..+++.++..-.. .
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~ 1749 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL 1749 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhh
Confidence 889999999999999999999999999998888999999999999999999999999999765311 0
Q ss_pred HH----------HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 004336 650 SA----------YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRA 686 (760)
Q Consensus 650 ~~----------~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La 686 (760)
.. |......-..++-+..|..+.+..|.....++.+|
T Consensus 1750 ~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1750 LIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 00 00111111234556778888888887777777776
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.045 Score=36.70 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 508 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~ 508 (760)
++++.+|.++...|++++|++.|+++++..|+.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 468999999999999999999999999999873
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.19 Score=52.39 Aligned_cols=76 Identities=14% Similarity=0.047 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 681 PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 681 ~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
...++-.+|.+.++++.|+...+..+.+.|+++.-+ =+|.+|.++|.+..|...++..++..|+++++..+..++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 346777899999999999999999999999998554 5699999999999999999999999999998776655544
|
|
| >KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.073 Score=57.16 Aligned_cols=85 Identities=21% Similarity=0.215 Sum_probs=71.3
Q ss_pred EEEEecCeEeehhHHHHhcCC--HHHHhhccCCCCCCccce--eEecCCCCCHHHHHHHHhccccCccCCCChhhHHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALS--APFSAMLNGSFMESLCED--IDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL 259 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s--~yf~amf~~~~~e~~~~~--v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~ll 259 (760)
|.|-|||+.|.--|.-|+... .+|.|+|+|.+.-...+. |=| +=+|+.+..|++|..||.|+ ++.-....+|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~-~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLD-ASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence 578899999999999999887 489999998886555544 555 56999999999999999997 7776666677
Q ss_pred H-HHhhhChHhHHH
Q 004336 260 I-FANKFCCERLKD 272 (760)
Q Consensus 260 ~-~a~~~~~~~~~~ 272 (760)
. =|..|++..+.+
T Consensus 89 hdEA~fYGl~~llr 102 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhcCcHHHHH
Confidence 6 899999988876
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.82 Score=44.63 Aligned_cols=120 Identities=21% Similarity=0.218 Sum_probs=85.0
Q ss_pred hhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ch-HHHHHHHHHHHHcCCHHHHHHH
Q 004336 566 VSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKIR----HT-RAHQGLARVHFLKNNKTTAYEE 637 (760)
Q Consensus 566 ~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~----~~-~a~~~La~~~~~~g~~~~A~~~ 637 (760)
...++.-++.++...-+ ..++..+|..|.+.|++++|+++|.++.... +. +.+..+.++....|++......
T Consensus 16 ~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~ 95 (177)
T PF10602_consen 16 LEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY 95 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666655433 6889999999999999999999999988732 22 7888999999999999988888
Q ss_pred HHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004336 638 MTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 709 (760)
Q Consensus 638 l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~ 709 (760)
+.++-..-...+. +..+ .....+-|..++..++|.+|...|-.+..-.
T Consensus 96 i~ka~~~~~~~~d-~~~~-----------------------nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 96 IEKAESLIEKGGD-WERR-----------------------NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHhccch-HHHH-----------------------HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 8776544332110 0000 0122344677778899999999887776544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.72 E-value=13 Score=44.75 Aligned_cols=222 Identities=12% Similarity=0.036 Sum_probs=123.1
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
+....|.++|...+..|...+|++.|-++ +++ ..+...-.+..+.|.|++-+.+++..........+++
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDp------s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDP------SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCc------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence 34567888999999999999999998775 443 5566677788899999999888854443322222221
Q ss_pred HHH-----------HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Q 004336 461 LSV-----------IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 461 l~~-----------~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
.-. ++..+ ..|+.+. .-..|.-.+..|.|+.|.-.|.. ..-|..|+..+...|+|..|.
T Consensus 1171 eLi~AyAkt~rl~elE~fi-~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFI-AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHHHHHHhchHHHHHHHh-cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHH
Confidence 111 11111 1132222 22344455555555555544432 223455666666666777666
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 530 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 530 ~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~A 609 (760)
...+++-.. ..|.....+.-+. +.+.-|--+--...-.++-+-.+-..|...|-+++-+..++.+
T Consensus 1241 D~aRKAns~----ktWK~VcfaCvd~-----------~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1241 DAARKANST----KTWKEVCFACVDK-----------EEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHhhhccch----hHHHHHHHHHhch-----------hhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 666665322 3343333333332 1111111111111111455566777788888888888888888
Q ss_pred Hhhcch--HHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 610 LKIRHT--RAHQGLARVHFLKNNKTTAYEEMT 639 (760)
Q Consensus 610 l~~~~~--~a~~~La~~~~~~g~~~~A~~~l~ 639 (760)
+-+... ..+..||.+|.+- ++++-.+.++
T Consensus 1306 LGLERAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 765333 5555666666543 3544444444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.065 Score=37.20 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=15.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 512 LVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 512 ~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
+.+||.+|...|++++|+.+|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666666666666666443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=8.2 Score=42.57 Aligned_cols=122 Identities=11% Similarity=0.021 Sum_probs=73.4
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
..|+...|-.-...+|...|..| ....+.+.+....|+|+.+...+. . .++++... +
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p------~~i~l~~~i~~~lg~ye~~~~~~s------~---------~~~~~~s~--~ 357 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDP------VLIQLRSVIFSHLGYYEQAYQDIS------D---------VEKIIGTT--D 357 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCc------hhhHHHHHHHHHhhhHHHHHHHhh------c---------hhhhhcCC--c
Confidence 34599999999999999999997 666778889999999999988771 1 12222211 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
.+..-+-.....+|++++|...-.-.+...-+++++..--+......|-+++|...+++.+.++|
T Consensus 358 -~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 358 -STLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred -hHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 11111222344555666665555555544444444444444444455555666666666655554
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.3 Score=41.85 Aligned_cols=74 Identities=9% Similarity=-0.089 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~--~~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.-+.-...|++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 445688888888888888888888888888888888888888877654 45555566666666665544444443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.14 Score=57.01 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=78.2
Q ss_pred HHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004336 429 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG-VLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 507 (760)
Q Consensus 429 lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~ 507 (760)
.|......|+...|+..+ ..++-..|... ....++|.+....|-..+|-..+.+++.++..
T Consensus 613 aglywr~~gn~~~a~~cl------------------~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s 674 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACL------------------QRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS 674 (886)
T ss_pred ccceeeecCCcHHHHHHH------------------HHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc
Confidence 344445678888888888 77777777554 34678888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 508 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 508 ~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.+-.++.+|+.+..+.+.+.|++.++++++.+|++
T Consensus 675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKC 709 (886)
T ss_pred CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCC
Confidence 88888888999998999999999999999888887
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.12 Score=53.10 Aligned_cols=75 Identities=16% Similarity=0.037 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHH
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYA 551 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~ 551 (760)
+-.+.|.-..+.|+.++|...|+.|+.+.|.+++++..+|......++.-+|-.+|-+++.+.|.+ ++..+.+..
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 334556667789999999999999999999999999999999999999999999999999999999 777666543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.52 Score=47.49 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHHh----CC---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCC
Q 004336 488 LNCPEAAMRSLQLARQH----AA---SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 560 (760)
Q Consensus 488 ~g~~~~Ai~~l~kal~~----~p---~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~ 560 (760)
...+++|++.|.-|+-. .. .-+..+..+||+|...|+.+.....+++|+..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~---------------------- 147 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF---------------------- 147 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH----------------------
Confidence 34566777776666532 11 22566788999999999977777777776632
Q ss_pred cchhhhhHHHHHHhhhHh---hccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 561 CSSTVVSLLEDALKCPSD---RLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 561 ~~~~~~~~leeAl~~~~~---~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
+++|...-.. .+....+.+.+|.+..+.|++++|..+|.+.+..
T Consensus 148 --------y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 148 --------YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred --------HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 1111111111 1222567888999999999999999999999874
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.46 Score=49.53 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=41.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004336 426 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 505 (760)
Q Consensus 426 ~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~ 505 (760)
+.++-.++.+.++++.|+... +.++..+|+++.-+...|.+|.++|++..|...++..++..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~------------------e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRAS------------------EALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 334445555566666666555 66666666666666666666666666666666666666666
Q ss_pred CCcHHHHH
Q 004336 506 ASDHERLV 513 (760)
Q Consensus 506 p~~~~a~~ 513 (760)
|+++.+..
T Consensus 246 P~dp~a~~ 253 (269)
T PRK10941 246 PEDPISEM 253 (269)
T ss_pred CCchhHHH
Confidence 66555543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.18 Score=50.03 Aligned_cols=97 Identities=14% Similarity=0.008 Sum_probs=68.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHcccCCCC
Q 004336 483 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF--EAFFLKAYALADSSQDSS 560 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~--~a~~~la~~l~~~~~~~~ 560 (760)
....+.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+ -+-..++..-....-...
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~e~p~~p 82 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLGRGETPEKP 82 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhcCCCCCCCC
Confidence 345677899999999999999999999999999999999999999999999999999988 333333322221111111
Q ss_pred cchhhhhHHHHHHhhhHhh
Q 004336 561 CSSTVVSLLEDALKCPSDR 579 (760)
Q Consensus 561 ~~~~~~~~leeAl~~~~~~ 579 (760)
.+..+...++.-.+.|...
T Consensus 83 P~aYVe~LFD~~Ae~Fd~~ 101 (287)
T COG4976 83 PSAYVETLFDQYAERFDHI 101 (287)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 2233445555555555444
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.99 E-value=1.4 Score=44.86 Aligned_cols=201 Identities=15% Similarity=0.164 Sum_probs=110.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcch
Q 004336 488 LNCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 563 (760)
Q Consensus 488 ~g~~~~Ai~~l~kal~~~p~~~----~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~ 563 (760)
..++++|+..|++.+++.+... .++-.+-.+++.+|++++-+..|.+.+..-.+. ..-.- +
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA-------VTrNy-------S- 104 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA-------VTRNY-------S- 104 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-------Hhccc-------c-
Confidence 4589999999999999988754 456677889999999999999999887431110 00000 0
Q ss_pred hhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---h-cch----HHHHHHHHHHHHcCCHHHHH
Q 004336 564 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK---I-RHT----RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 564 ~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~---~-~~~----~a~~~La~~~~~~g~~~~A~ 635 (760)
....+.+-..-....+.+--...|+..+. - .+. ..-..||.+|+..|++..-.
T Consensus 105 -------------------EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~ 165 (440)
T KOG1464|consen 105 -------------------EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQ 165 (440)
T ss_pred -------------------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHH
Confidence 00111111111122233333344444333 1 111 23346788888888887666
Q ss_pred HHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Q 004336 636 EEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLL 715 (760)
Q Consensus 636 ~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~ 715 (760)
+.++++-.... .+....+..+..+ ..++|..-...|..+++..+-...|++++.+....+.-
T Consensus 166 KIlkqLh~SCq--------------~edGedD~kKGtQ----LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 166 KILKQLHQSCQ--------------TEDGEDDQKKGTQ----LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred HHHHHHHHHhc--------------cccCchhhhccch----hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 66655433322 1111111111111 11233333456666777777777778887765443321
Q ss_pred H-------HHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 716 H-------LRAAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 716 ~-------l~a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
. .++..+.+.|++++|-..|-.|.+
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1 225666666788888777777765
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.49 Score=40.55 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 494 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 494 Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.+..+++.++.+|++.++.+.+|..+...|++++|++.+-++++.++++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4567889999999999999999999999999999999999999998877
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.97 Score=42.89 Aligned_cols=84 Identities=13% Similarity=-0.041 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.++..+..+....++.+.+..++ .-+-.+.|..+.+-..-|.++...|++.+|+..|+.+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL------------------~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALL------------------DALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHH------------------HHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 44555555556666666776666 555556678888777788888888888888888888777
Q ss_pred hCCCcHHHHHHHHHHHHHCCCH
Q 004336 504 HAASDHERLVYEGWILYDTSHC 525 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~ 525 (760)
..|..+.+.-.++.+++..|+.
T Consensus 73 ~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 73 RAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred cCCCChHHHHHHHHHHHHcCCh
Confidence 7777777777777777777764
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.21 Score=51.45 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=40.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 688 VLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 688 ~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
-..+.|+.++|...|+.|+++.|+++.+.+. +.+.+...+.-+|-.+|-+||.++|.|.+++-
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 3445666677777777777777766666544 55555556666666677777777776666653
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.56 E-value=3.4 Score=37.00 Aligned_cols=102 Identities=18% Similarity=0.125 Sum_probs=66.7
Q ss_pred HHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhc----------ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 583 GQALNNLG--SVYVDCGQLDLAADCYSNALKIR----------HT----RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 583 ~~a~~~Lg--~~y~~~g~~~eA~~~~~~Al~~~----------~~----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
+.+|..|+ .-.+..|-|++|...+++|.+.. +. -.+..|+.++...|+|++++..-.+++
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL---- 82 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL---- 82 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH----
Confidence 44555443 44566799999999999999842 22 356788999999999988877665443
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH----HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 647 NNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYP----YRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 647 ~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~----~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
.+|++--+++.+.... .++.|..+...|+.++|+..|+.+-+
T Consensus 83 -------------------~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 83 -------------------RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -------------------HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -------------------HHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3333333444443333 35678888888999999988888764
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.48 E-value=6 Score=42.60 Aligned_cols=162 Identities=11% Similarity=0.030 Sum_probs=90.0
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcch
Q 004336 496 RSLQLARQHAASDHERLVYEGWILYDTSH------------CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 563 (760)
Q Consensus 496 ~~l~kal~~~p~~~~a~~~Lg~i~~~~g~------------~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~ 563 (760)
.-|.+.+..+|.+.++|..+....-..-. .+.-+.+|++|++.+|++
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--------------------- 64 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--------------------- 64 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC---------------------
Confidence 45778888999999999988776554432 355667778888777766
Q ss_pred hhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcC-----CHHHHHHHH
Q 004336 564 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKN-----NKTTAYEEM 638 (760)
Q Consensus 564 ~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g-----~~~~A~~~l 638 (760)
...+..+-....+..+.++..+-+++++..+|.......+.+-+.++ .+......|
T Consensus 65 -------------------~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 65 -------------------ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred -------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 22333333333344455666666777777655533333333333333 455666666
Q ss_pred HHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004336 639 TKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 709 (760)
Q Consensus 639 ~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~ 709 (760)
.+++..-.....-. . ....... .........+..+...+.+.|..+.|+..++..++++
T Consensus 126 ~~~l~~L~~~~~~~--~----~~~~~~~------~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRSGR--M----TSHPDLP------ELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhccc--c----ccccchh------hHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 66554432100000 0 0000000 0000112344556667788888899998888888764
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=93.38 E-value=5.7 Score=43.47 Aligned_cols=126 Identities=9% Similarity=-0.116 Sum_probs=80.0
Q ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh
Q 004336 501 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 579 (760)
Q Consensus 501 al~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~ 579 (760)
.++.+|-..+++..++.++..+|+.+.|.+..++++-.-... ...+.. ..... ..+.. + --|...
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~--~~~~~--~~g~~-----r-----L~~~~~ 97 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSP--FRSNL--TSGNC-----R-----LDYRRP 97 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhh--hhccc--ccCcc-----c-----cCCccc
Confidence 456789999999999999999999999999999998321110 000000 00000 00000 0 000000
Q ss_pred c-cH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 580 L-RK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAYEEMTK 640 (760)
Q Consensus 580 l-~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~~~l~~ 640 (760)
. +. -.+.+.....+.+.|-+..|.++.+-.+.++|. .+++.+-....+.++++--++.++.
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 0 00 456666777888999999999999999997666 5666666666777888666666554
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.29 Score=46.66 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=68.3
Q ss_pred cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccC--------------------
Q 004336 189 HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN-------------------- 248 (760)
Q Consensus 189 ~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~-------------------- 248 (760)
+|+.|.+-+.+ |-.|.-.++|+...=.......|.|+ +|++.+|+.||+|++-=+-.
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 56677775544 55677777777532112222578998 69999999999999873310
Q ss_pred ----CCChhhHHHHHHHHhhhChHhHHHHHHHHHHhhc
Q 004336 249 ----GVTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (760)
Q Consensus 249 ----~~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~ 282 (760)
.++..++.+|+-|||+|.+.+|.+.||...+..+
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 0567799999999999999999999999998766
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.14 Score=33.03 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAA 506 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p 506 (760)
+++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.24 E-value=27 Score=43.00 Aligned_cols=132 Identities=20% Similarity=0.155 Sum_probs=89.7
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHc----c---CHHHHHHHHhhhccccccCCcCcH
Q 004336 389 LGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHI----D---NWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 389 lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~----g---~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
....++..+.|+.|+..|+++-...|+.. .|. +|.+..|.....+ | .+++|+.-+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 542 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRK--EGY-EAQFRLGITLLEKASEQGDPRDFTQALSEF--------------- 542 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcc--cch-HHHHHhhHHHHHHHHhcCChHHHHHHHHHH---------------
Confidence 45567788899999999999999999875 333 6777777655332 2 234444444
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----CCCHHHHHHHHHHHH
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD-----TSHCEEGLRKAEESI 536 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~-----~g~~eeAl~~~~~al 536 (760)
+ -+...|.-+.-|...|.+|.++|++++-+++|..|++..|..+..-...-.+-+. ..+...|....--++
T Consensus 543 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (932)
T PRK13184 543 ---S-YLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLAL 618 (932)
T ss_pred ---H-HhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2334477788899999999999999999999999999998877543222211111 123345556666666
Q ss_pred hhcCCh
Q 004336 537 QMKRSF 542 (760)
Q Consensus 537 ~l~p~~ 542 (760)
.+-|..
T Consensus 619 ~~~~~~ 624 (932)
T PRK13184 619 WIAPEK 624 (932)
T ss_pred HhCccc
Confidence 666654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.42 Score=36.44 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 512 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~ 512 (760)
+|.+|..+.+.|+|++|.++.+.+++..|++..+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 34445555555555555555555555555554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.02 E-value=19 Score=40.63 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhcc-CcHHHHHHHHhc-------CCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHcCCHHHHHHH
Q 004336 631 KTTAYEEMTKLIKKAR-NNASAYEKRSEY-------CDRELTRADLEMVTQLDPLRV-YPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 631 ~~~A~~~l~~al~~~~-~~~~~~~~~~~~-------~~~~~A~~~l~kal~l~p~~~-~~~~~La~~~~~~g~~~eAi~~ 701 (760)
.+++...|+++++..- .+..+|...+.+ +..+.....+++++.+...++ -+|..+-..-.+..-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4455566666554332 333344333322 124445566666665433222 2333333444444557888899
Q ss_pred HHHHHHcCCCcHHHHHHHH--HHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 702 LSRAIAFKADLHLLHLRAA--FHEHTGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 702 l~kal~~~p~~~~~~l~a~--~~~~~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
|.++-+..-....++..+. =|...+|..-|.+.|+-.|...++.++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv 438 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYV 438 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHH
Confidence 9998876555444443322 23455999999999999999999998753
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.13 Score=33.10 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.++..+|.++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46789999999999999999999999998875
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=92.95 E-value=4.5 Score=36.20 Aligned_cols=101 Identities=17% Similarity=0.020 Sum_probs=68.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 482 SLLLLRLNCPEAAMRSLQLARQHAAS------------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 482 a~~~~~~g~~~~Ai~~l~kal~~~p~------------~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
|.-.+.-|-|++|...++++.+..-. ++-.+..|+..+..+|+|++++...++++. .++..|
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~------YFNRRG 89 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR------YFNRRG 89 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH------HHHHH-
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH------HHhhcc
Confidence 34556779999999999999876422 234577899999999999999998888873 222223
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
....+. |.+= ..+.++.|..+...|+.++|+..|+.+-+
T Consensus 90 EL~qde-----------GklW------------IaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 90 ELHQDE-----------GKLW------------IAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -TTSTH-----------HHHH------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cccccc-----------chhH------------HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 222221 1000 34556778888889999999999988865
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.90 E-value=14 Score=38.84 Aligned_cols=129 Identities=16% Similarity=0.048 Sum_probs=87.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhC-CCCc-chhchHHHHHHHHHHHHHcc-CHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 393 RLLRKEYDEAEHLFEAILTLS-PDYR-MFEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~-P~~~-~~~~~~~a~~~lg~l~~~~g-~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
...+|+++.|..++.++-... .-.+ ....-...++..|.-....+ +++.|..|+ +++.+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL------------------~~a~~ 64 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWL------------------QRAYD 64 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH------------------HHHHH
Confidence 356789999999999886544 2121 11223356788898888999 999999999 44443
Q ss_pred h----------CCCc----HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 004336 470 S----------DAPK----GVLYFRQSLLLLRLNCPE---AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 532 (760)
Q Consensus 470 ~----------~p~~----~~~~~~la~~~~~~g~~~---~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~ 532 (760)
. .|+. ...+..++.+|...+.++ +|....+.+-...|+.+..+..--.+....++.+++.+.+
T Consensus 65 ~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L 144 (278)
T PF08631_consen 65 ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEIL 144 (278)
T ss_pred HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHH
Confidence 3 1221 345567788888877765 3444555555566777777655555555588899998888
Q ss_pred HHHHhhc
Q 004336 533 EESIQMK 539 (760)
Q Consensus 533 ~~al~l~ 539 (760)
.+++..-
T Consensus 145 ~~mi~~~ 151 (278)
T PF08631_consen 145 MRMIRSV 151 (278)
T ss_pred HHHHHhc
Confidence 8888653
|
It is also involved in sporulation []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.89 E-value=3.7 Score=39.01 Aligned_cols=79 Identities=23% Similarity=0.201 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcc
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 555 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~ 555 (760)
.+.....+-...++.+++...+....-+.|+.++....-|+++...|++.+|+..++.+....|.. .+--.++.++...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 455566677788899999999999999999999999999999999999999999999998888877 4444555555443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=1.1 Score=49.67 Aligned_cols=92 Identities=14% Similarity=-0.031 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH--HHHcCCHHHHHHHHHHHHhc
Q 004336 664 TRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAF--HEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 664 A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~--~~~~g~~~~A~~~~~~aL~l 741 (760)
-...|+.|+...+.+...|.....-..+.+.+.+--..|.+++..+|+++.+|.-+.. +.-.-+.+.|...+.++|..
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 3556777777777777777776655555666777777888888888888877755322 23323477788888888888
Q ss_pred CCCcHHHHHHHHHh
Q 004336 742 DPNDQEMLELHSRV 755 (760)
Q Consensus 742 ~P~~~~~l~~~~r~ 755 (760)
+|+.+..+.-|-|+
T Consensus 170 npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 170 NPDSPKLWKEYFRM 183 (568)
T ss_pred CCCChHHHHHHHHH
Confidence 88888776665554
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.86 Score=40.29 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=73.2
Q ss_pred HHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH---HHHHHHHHHHHHcC-----------CHHHHH
Q 004336 430 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG---VLYFRQSLLLLRLN-----------CPEAAM 495 (760)
Q Consensus 430 g~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~---~~~~~la~~~~~~g-----------~~~~Ai 495 (760)
+.-+...|++-+|++++ +..+..++++. ..+...|.++.++. -.-.|+
T Consensus 3 A~~~~~rGnhiKAL~ii------------------ed~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sv 64 (111)
T PF04781_consen 3 AKDYFARGNHIKALEII------------------EDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSV 64 (111)
T ss_pred HHHHHHccCHHHHHHHH------------------HHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhH
Confidence 45567888999999888 88888887765 56677788776543 233688
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 496 RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 496 ~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
++|.++..+.|..+..++.+|.-+-....|+++....++++.+
T Consensus 65 e~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 65 ECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999998888888889999988888865
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.68 E-value=33 Score=45.39 Aligned_cols=307 Identities=14% Similarity=0.010 Sum_probs=160.0
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHH
Q 004336 389 LGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 468 (760)
Q Consensus 389 lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al 468 (760)
++.+-+..|.|..|.-++++- ...+... .....-+..+-.+|...++++.-.... ...
T Consensus 1389 La~aSfrc~~y~RalmylEs~-~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~-------------------~~r 1446 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESH-RSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVS-------------------ARR 1446 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHh-ccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHH-------------------HHh
Confidence 344445555888888888875 1111111 111122233333665666555443333 111
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHH
Q 004336 469 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFL 547 (760)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~ 547 (760)
..+| .....-......|++..|..+|+++++..|+....+...-...+..|++...+...+-.....++. .-++.
T Consensus 1447 ~a~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s 1522 (2382)
T KOG0890|consen 1447 FADP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNS 1522 (2382)
T ss_pred hcCc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHH
Confidence 1111 233444566778999999999999999999988777777777888899999988777666555554 44444
Q ss_pred HHHHHHcccCCCCcchhhhhHHHHHHhhhHhh-ccHHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHhhcchHHHHHH
Q 004336 548 KAYALADSSQDSSCSSTVVSLLEDALKCPSDR-LRKGQALNNLGSVYVDCGQLDL-----AADCYSNALKIRHTRAHQGL 621 (760)
Q Consensus 548 la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~-l~~~~a~~~Lg~~y~~~g~~~e-----A~~~~~~Al~~~~~~a~~~L 621 (760)
++.-.+.. .+.++....+..+. .. ......+|.+.....+-+. +++--+..+ +.+ +
T Consensus 1523 ~~~eaaW~----------l~qwD~~e~~l~~~n~e-~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~------l 1584 (2382)
T KOG0890|consen 1523 LGVEAAWR----------LSQWDLLESYLSDRNIE-YWSVESIGKLLLRNKKKDEIATLDLIENSRELV-IEN------L 1584 (2382)
T ss_pred HHHHHHhh----------hcchhhhhhhhhccccc-chhHHHHHHHHHhhcccchhhHHHHHHHHHHHh-hhh------H
Confidence 43322211 02333332222211 00 0011114544443332221 111111110 111 1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh------------c-c-------CcHHHHHHH--HhcCCHHHHHHHHHHHHh------
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKK------------A-R-------NNASAYEKR--SEYCDRELTRADLEMVTQ------ 673 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~------------~-~-------~~~~~~~~~--~~~~~~~~A~~~l~kal~------ 673 (760)
..+ ...|.+..+++.+-++.-. . + .+.|.+... ..+.+..+-+-.++++.-
T Consensus 1585 sa~-s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~ 1663 (2382)
T KOG0890|consen 1585 SAC-SIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRS 1663 (2382)
T ss_pred HHh-hccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccc
Confidence 000 0111222222222221111 0 1 112222221 112233344444444321
Q ss_pred -hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 674 -LDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 674 -l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
.+......|...|.+-...|+++-|..++-+|.+..+ +.++ -+|..+.+.|+-..|+..+++.++.+
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 1334567899999999999999999999999988763 3344 34666666699999999999999643
|
|
| >PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.34 Score=38.34 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=41.3
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccc
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV 243 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~y 243 (760)
|+|.. +|++|.+.|.+. -.|.-++.||.+ +.+... .|.|+ +|+..+|+.|++|.+
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~-~~~~~~-~Ipl~--~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLED-LGDEDE-PIPLP--NVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHC-TCCCGT-EEEET--TS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhh-hccccc-ccccC--ccCHHHHHHHHHHHH
Confidence 55654 678898877654 589999999975 333332 79998 799999999999975
|
It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A .... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.43 E-value=24 Score=40.34 Aligned_cols=91 Identities=21% Similarity=0.023 Sum_probs=69.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHH-HHHHHHcCCHHHHHHHH
Q 004336 658 YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF-KADLHLLHLR-AAFHEHTGDVLGALRDC 735 (760)
Q Consensus 658 ~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~-~p~~~~~~l~-a~~~~~~g~~~~A~~~~ 735 (760)
.|+++...-.+++++---......|...+......|+.+-|...+.++.++ .|..+.+++. +.+-...|++..|...+
T Consensus 310 ~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~l 389 (577)
T KOG1258|consen 310 LGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVIL 389 (577)
T ss_pred cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHH
Confidence 477778888888887777777788888888888888888888877777765 3556667755 77888888999999999
Q ss_pred HHHHhcCCCcHHH
Q 004336 736 RAALSVDPNDQEM 748 (760)
Q Consensus 736 ~~aL~l~P~~~~~ 748 (760)
++..+--|+.-++
T Consensus 390 q~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 390 QRIESEYPGLVEV 402 (577)
T ss_pred HHHHhhCCchhhh
Confidence 9888766765543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.39 E-value=14 Score=40.56 Aligned_cols=233 Identities=14% Similarity=0.001 Sum_probs=129.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
+.+++.-.|-.++.|+.....+...++-+.|+...++++...|. ....++..|...++.++--..|++.++-- .
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L---~ 364 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL---K 364 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH---H
Confidence 57777778889999999999999999999999999988877776 66677777777777777777777665310 0
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---chHHHH
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIR---HTRAHQ 619 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~---~~~a~~ 619 (760)
..+..+..-... ..-+..+...+..-+...+ .-++.-+-..-.+..-.+.|...|-++-+.. |. ++.
T Consensus 365 r~ys~~~s~~~s--------~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~-vyi 435 (660)
T COG5107 365 RKYSMGESESAS--------KVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH-VYI 435 (660)
T ss_pred HHHhhhhhhhhc--------cccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc-eee
Confidence 000000000000 0001111111111000011 3344444444445556777888887777643 22 222
Q ss_pred HHH-HHHHHcCCHHHHHHHHHHHHHhccCcHHHHHH----HHhcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHc
Q 004336 620 GLA-RVHFLKNNKTTAYEEMTKLIKKARNNASAYEK----RSEYCDRELTRADLEMVTQLDPLR--VYPYRYRAAVLMDS 692 (760)
Q Consensus 620 ~La-~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~----~~~~~~~~~A~~~l~kal~l~p~~--~~~~~~La~~~~~~ 692 (760)
.-| .-|+..|++.-|...++-.+...|+.+..-+. +...++...|...|++++..-... ..+|..+-.--..-
T Consensus 436 ~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~ 515 (660)
T COG5107 436 YCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMV 515 (660)
T ss_pred eHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhh
Confidence 222 23566788888888888877777765543222 223466666666666655432221 23333333333444
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 004336 693 HKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 693 g~~~eAi~~l~kal~~~p~ 711 (760)
|+...++..=++.....|.
T Consensus 516 G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 516 GSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred cchHHHHhHHHHHHHHcCc
Confidence 5555555544444444444
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.17 E-value=14 Score=38.99 Aligned_cols=139 Identities=11% Similarity=-0.025 Sum_probs=75.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
.+....-+.+-....+..+..+-++.-..+++++|+.+.++..|+.- ..--..+|...++++++..... ++....
T Consensus 181 ~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~---yr~sqq 255 (556)
T KOG3807|consen 181 TDFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETI---YRQSQQ 255 (556)
T ss_pred ccccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHH---HhhHHH
Confidence 34444445555566677777778888888888888888888777653 2234567777777777543222 111111
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHH
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHF 626 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~ 626 (760)
...+ +...+|. ..+...- ..+-..++.+..++|+..+|++.|+...+..|. .++-+|...+.
T Consensus 256 ~qh~-----------~~~~da~--~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalL 322 (556)
T KOG3807|consen 256 CQHQ-----------SPQHEAQ--LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALL 322 (556)
T ss_pred Hhhh-----------ccchhhh--hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence 1111 0000000 0000000 334445777777788888888888777665444 33444444444
Q ss_pred Hc
Q 004336 627 LK 628 (760)
Q Consensus 627 ~~ 628 (760)
..
T Consensus 323 E~ 324 (556)
T KOG3807|consen 323 EL 324 (556)
T ss_pred HH
Confidence 33
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.95 E-value=16 Score=37.42 Aligned_cols=133 Identities=15% Similarity=0.185 Sum_probs=109.6
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHc-cCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHI-DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 471 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~-g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~ 471 (760)
+.....-..|..+-+.++.++|.+- ..|+..-.+...+ .+..+-+.|+ ...++.+
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnY------TVW~yRr~iL~~l~~dL~~El~~l------------------~eI~e~n 108 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANY------TVWQYRRVILRHLMSDLNKELEYL------------------DEIIEDN 108 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccc------hHHHHHHHHHHHhHHHHHHHHHHH------------------HHHHHhC
Confidence 3344566889999999999999995 6666655555443 3456666777 9999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPE-AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 549 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~-~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la 549 (760)
|.+-.+|...-.+....|++. .-++..+.++..+..+-.+|...-++...-+.++.-+.+..+.++.+-.+ .+|...-
T Consensus 109 pKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ry 188 (318)
T KOG0530|consen 109 PKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRY 188 (318)
T ss_pred ccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheee
Confidence 999999999999999999988 88899999999999999999999999999999999999999999887655 6665543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.95 E-value=5 Score=45.13 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=75.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchh
Q 004336 486 LRLNCPEAAMRSLQLARQHAASD-HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 564 (760)
Q Consensus 486 ~~~g~~~~Ai~~l~kal~~~p~~-~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~ 564 (760)
.-.|+++++.+..+.. ++-|.- .+-...++..+...|..+.|+..-+ +.+..|.++.-+
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-------D~~~rFeLAl~l------------ 331 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT-------DPDHRFELALQL------------ 331 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS--------HHHHHHHHHHC------------
T ss_pred HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC-------ChHHHhHHHHhc------------
Confidence 4467788876666421 112222 3345667777888888888866532 223344443222
Q ss_pred hhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 565 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKL 641 (760)
Q Consensus 565 ~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~a 641 (760)
|+++.|.+.....-. ...|..||...+.+|+++-|..+|+++- -+..|..+|...|+.+.-.++.+.+
T Consensus 332 --g~L~~A~~~a~~~~~-~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 332 --GNLDIALEIAKELDD-PEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp --T-HHHHHHHCCCCST-HHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred --CCHHHHHHHHHhcCc-HHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 667777766655433 5689999999999999999999999873 3456777888888875544444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.85 E-value=20 Score=38.14 Aligned_cols=266 Identities=16% Similarity=0.093 Sum_probs=150.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---cCChHHH
Q 004336 479 FRQSLLLLRLNCPEAAMRSLQLARQH--AASD--------HERLVYEGWILYDTSHCEEGLRKAEESIQM---KRSFEAF 545 (760)
Q Consensus 479 ~~la~~~~~~g~~~~Ai~~l~kal~~--~p~~--------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l---~p~~~a~ 545 (760)
+..+......++.++++..|.+.+.. .|.. -.....+|.+|...|+.++=....+..-.. -+...+-
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 34455566677788999999888874 2222 134678999999999988766655544322 1111000
Q ss_pred HHHHHHHHcc-cCCCCcchhhhhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cch--
Q 004336 546 FLKAYALADS-SQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKI----RHT-- 615 (760)
Q Consensus 546 ~~la~~l~~~-~~~~~~~~~~~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----~~~-- 615 (760)
.. ...+.+. ..-+......++...+.++...+.-+. ...-..+...|.+.++|.+|+......++. +..
T Consensus 88 Kl-vR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 88 KL-VRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred HH-HHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 00 0111111 111223334455555555554443222 344556888999999999999988887762 211
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-----Cc-HHHHHHH-----HhcCCHHHHHHHHHHHHhhCC---CCh
Q 004336 616 --RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR-----NN-ASAYEKR-----SEYCDRELTRADLEMVTQLDP---LRV 679 (760)
Q Consensus 616 --~a~~~La~~~~~~g~~~~A~~~l~~al~~~~-----~~-~~~~~~~-----~~~~~~~~A~~~l~kal~l~p---~~~ 679 (760)
+++..-..+|+...+..+|...+..+-.... +. ....... +.-.++.-|..+|-+|++-.. ++.
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v 246 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV 246 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence 6666778889999999999988887654332 11 1111111 111467788888888876431 112
Q ss_pred H---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HH--HHHHH--HcCCHHHHHHHHHHHHhcCCCc
Q 004336 680 Y---PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LR--AAFHE--HTGDVLGALRDCRAALSVDPND 745 (760)
Q Consensus 680 ~---~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~--a~~~~--~~g~~~~A~~~~~~aL~l~P~~ 745 (760)
. .+.++-.+-...+..++--..+..-..+.-+.+.+. ++ +..+. .+.+|+.|+..|+.=|..||--
T Consensus 247 ~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~iv 320 (411)
T KOG1463|consen 247 KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIV 320 (411)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHH
Confidence 2 333444444556666665444433222222222222 22 33332 2367899999999888877743
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.70 E-value=4.3 Score=38.02 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=78.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCC
Q 004336 481 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDS 559 (760)
Q Consensus 481 la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~ 559 (760)
....-...++++++...+....-+.|+.++....-|+++...|++.+|+..+++..+..+.. .+.-.++.++...
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al---- 91 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK---- 91 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc----
Confidence 33444558999999999999999999999999999999999999999999999999887776 4555556666554
Q ss_pred CcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 560 SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 560 ~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
+ ...|...+.-....+...+|+...+...
T Consensus 92 -------~---------------Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 92 -------G---------------DAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred -------C---------------ChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 1 2355556666666666666666555443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.47 E-value=28 Score=39.07 Aligned_cols=239 Identities=18% Similarity=0.107 Sum_probs=126.9
Q ss_pred hHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchhhhccccchhhHHHHhccchHH
Q 004336 267 CERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFS 346 (760)
Q Consensus 267 ~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~~lL~~~~~~~r~~~~~~~~~~ 346 (760)
.+.|+..|++||+.--.+.. ++ .+..-.......|-.+|+-.++..|.+...+. +++.+| .|+...|. +-.
T Consensus 30 ~~~~~~ic~~hl~~~k~si~-~l-yisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~-~veh~c-----~~~l~~~e-~km 100 (711)
T COG1747 30 LDVLKGICDEHLAHSKNSII-AL-YISGIISLSKQLLDDSCLVTLLTIFGDNHKNQ-IVEHLC-----TRVLEYGE-SKM 100 (711)
T ss_pred HHHHHHHHHHHHHHhhhhhH-HH-HHHHHHHhhhccccchHHHHHHHHhccchHHH-HHHHHH-----HHHHHhcc-hHH
Confidence 56788999999986433322 22 12222223334555666666666666655432 333444 23333333 333
Q ss_pred HHHHhhHhhcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhC-CCCcchhchHHH
Q 004336 347 LYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLS-PDYRMFEGRVAA 425 (760)
Q Consensus 347 l~~~l~~v~~~~~~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~-P~~~~~~~~~~a 425 (760)
.|+-+.++.++. .++....+-+++++.. ++.+..-..++. ++..++-+.+..+|.+++... |...+..-+ +.
T Consensus 101 al~el~q~y~en--~n~~l~~lWer~ve~d---fnDvv~~ReLa~-~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~-ev 173 (711)
T COG1747 101 ALLELLQCYKEN--GNEQLYSLWERLVEYD---FNDVVIGRELAD-KYEKIKKSKAAEFFGKALYRFIPRRQNAAIK-EV 173 (711)
T ss_pred HHHHHHHHHHhc--CchhhHHHHHHHHHhc---chhHHHHHHHHH-HHHHhchhhHHHHHHHHHHHhcchhhhhhHH-HH
Confidence 456666776655 3445566677777663 333333333442 333468999999999988654 322100000 11
Q ss_pred HHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC--CCcHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 004336 426 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKGVLYFRQ-SLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 426 ~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~--p~~~~~~~~l-a~~~~~~g~~~~Ai~~l~kal 502 (760)
|.-+-.+ -..+.+.-... .+-++.. ...+...+.. -.-|....++++|++.+...+
T Consensus 174 WeKL~~~--i~dD~D~fl~l-------------------~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il 232 (711)
T COG1747 174 WEKLPEL--IGDDKDFFLRL-------------------QKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHIL 232 (711)
T ss_pred HHHHHHh--ccccHHHHHHH-------------------HHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHh
Confidence 1111000 01111111111 1111111 1222222222 245667889999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHhhcCCh
Q 004336 503 QHAASDHERLVYEGWILYD--------------------TSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~--------------------~g~~eeAl~~~~~al~l~p~~ 542 (760)
+++..+..+.-++-.-+.. -.++-+|+..|++.+..+..+
T Consensus 233 ~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 233 EHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 9988887777666555554 567788888888887765443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.29 E-value=2.4 Score=37.56 Aligned_cols=29 Identities=17% Similarity=0.067 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
+..++.+|.-+....-|+++..--++++.
T Consensus 78 A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 78 AHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 44555555554444455555555555544
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=91.26 E-value=3.3 Score=41.71 Aligned_cols=66 Identities=21% Similarity=0.155 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhC--C----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLA-------RQHA--A----SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~ka-------l~~~--p----~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
+.++.++|-+|...|+.+.....+++| ++.. | +.....+.+|.+.+..|++++|+.+|.+++....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 567778888888888866555555554 4332 2 2346788899999999999999999999997643
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.36 Score=48.03 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Q 004336 658 YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH 713 (760)
Q Consensus 658 ~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~ 713 (760)
.++.+.|.+.|.+++++-|.....|+.+|....+.|+++.|...|++.++++|++.
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 35556666666666666666666666666666666666666666666666666554
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.12 E-value=3.3 Score=51.05 Aligned_cols=141 Identities=15% Similarity=0.153 Sum_probs=107.4
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHH------HHHHHH-hhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccc
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEH------LFEAIL-TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS 454 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~------~~~~aL-~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~ 454 (760)
.+.-..+.|......|.+.+|.+ .+.... .+.|+. ...+..++.++.+.|+.++|+.+-+..-.
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~------~~~~~~La~l~~~~~d~~~Ai~~~~ka~i--- 1001 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEV------ASKYRSLAKLSNRLGDNQEAIAQQRKACI--- 1001 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhH------HHHHHHHHHHHhhhcchHHHHHhccccee---
Confidence 45556677878888888988888 444322 234455 37889999999999999999987722111
Q ss_pred cCCcCcHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCH
Q 004336 455 VDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHC 525 (760)
Q Consensus 455 ~~d~~sl~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--------~p~~~~a~~~Lg~i~~~~g~~ 525 (760)
..++.+..+ |+....+.+++......++...|+..+.+++.+ .|.-+....+++.++...+++
T Consensus 1002 --------i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~ 1073 (1236)
T KOG1839|consen 1002 --------ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA 1073 (1236)
T ss_pred --------eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH
Confidence 125555555 667888899999999999999999999998865 466667778899999999999
Q ss_pred HHHHHHHHHHHhhc
Q 004336 526 EEGLRKAEESIQMK 539 (760)
Q Consensus 526 eeAl~~~~~al~l~ 539 (760)
+.|+.+.+.|.+.+
T Consensus 1074 d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1074 DTALRYLESALAKN 1087 (1236)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998743
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.11 E-value=8.2 Score=43.45 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=64.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC
Q 004336 394 LLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 473 (760)
Q Consensus 394 l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~ 473 (760)
+.+|+++++..+.+.. ++-|.-+ ..-...++..+.+.|.++.|+... .
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i~-----~~~~~~i~~fL~~~G~~e~AL~~~--------------------------~ 319 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNIP-----KDQGQSIARFLEKKGYPELALQFV--------------------------T 319 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG-------HHHHHHHHHHHHHTT-HHHHHHHS--------------------------S
T ss_pred HHcCChhhhhhhhhhh-hhcccCC-----hhHHHHHHHHHHHCCCHHHHHhhc--------------------------C
Confidence 5567898887777522 2233333 133455667778888888888766 3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
++...+.+| .+.|+.+.|.+..+ ..++...|..||.....+|+++-|...|+++-
T Consensus 320 D~~~rFeLA---l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 320 DPDHRFELA---LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp -HHHHHHHH---HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred ChHHHhHHH---HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 455555554 67888888876543 34567899999999999999999988888763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.45 Score=33.57 Aligned_cols=29 Identities=38% Similarity=0.528 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
.+++++|.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56777888888888888888888887763
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.93 E-value=3.9 Score=39.86 Aligned_cols=103 Identities=12% Similarity=0.008 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
..++..+|..|.+.|+.+.|++.|.++.+..... .+.+..+-.+.+..|++........++-......
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~--------- 106 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG--------- 106 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc---------
Confidence 3567789999999999999999999988765433 3567778888889999999988888876542221
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
+.++ .+.......|..++..++|.+|...|-.+..
T Consensus 107 ---------------~d~~----------~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 107 ---------------GDWE----------RRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred ---------------chHH----------HHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 0000 0123334456677778999999998877654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.84 E-value=2.8 Score=47.59 Aligned_cols=43 Identities=7% Similarity=0.107 Sum_probs=21.5
Q ss_pred hHHHHHHhhhHhhccH-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 567 SLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 567 ~~leeAl~~~~~~l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~A 609 (760)
+.|.+|....++..+- ..+|+..|..+.+..++++|.+.|.+|
T Consensus 787 ~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 787 QRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 4445554444444222 445555555555555555555555444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.81 E-value=14 Score=42.22 Aligned_cols=212 Identities=14% Similarity=0.021 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQH--------------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~--------------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
|-.+|.-.+..=+++-|.+.|.+...+ +...++ -..++.++...|++.||.+.|.+.-.-+..-+
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE 666 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENRALE 666 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHH
Confidence 444555555555666666666554321 111122 24578888889999999998876422111111
Q ss_pred H-----HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHhh
Q 004336 544 A-----FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCY------SNALKI 612 (760)
Q Consensus 544 a-----~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~------~~Al~~ 612 (760)
. .|..+.-+... ...+.......+-.+.....-+ + ..-+.++...|+.++|+... +-++++
T Consensus 667 myTDlRMFD~aQE~~~~----g~~~eKKmL~RKRA~WAr~~ke-P---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI 738 (1081)
T KOG1538|consen 667 MYTDLRMFDYAQEFLGS----GDPKEKKMLIRKRADWARNIKE-P---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDI 738 (1081)
T ss_pred HHHHHHHHHHHHHHhhc----CChHHHHHHHHHHHHHhhhcCC-c---HHHHHHhhcccchhhhhhhhhcccHHHHHHHH
Confidence 1 11122222221 0000000000000000000001 1 12356667777777776543 222222
Q ss_pred ----cch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 004336 613 ----RHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRA 686 (760)
Q Consensus 613 ----~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La 686 (760)
+.. +.+..++.-+.....+.-|.+.|.++- +...+-......+++++|...-++.-+.-|+ .|+-.|
T Consensus 739 ~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g----D~ksiVqlHve~~~W~eAFalAe~hPe~~~d---Vy~pya 811 (1081)
T KOG1538|consen 739 ARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG----DLKSLVQLHVETQRWDEAFALAEKHPEFKDD---VYMPYA 811 (1081)
T ss_pred HhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc----cHHHHhhheeecccchHhHhhhhhCcccccc---ccchHH
Confidence 111 444444544455555555555554321 1112222222346667766655554443333 344446
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 004336 687 AVLMDSHKENEAIAELSRA 705 (760)
Q Consensus 687 ~~~~~~g~~~eAi~~l~ka 705 (760)
.-+....+++||...|.+|
T Consensus 812 qwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 812 QWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHhhhhhhHHHHHHHHHHh
Confidence 6666666666666666554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.59 Score=32.94 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.++.++|.+|..+|++++|+.++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 567788888888888888888888888653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.24 E-value=18 Score=34.83 Aligned_cols=63 Identities=10% Similarity=-0.009 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 480 RQSLLLLRLNCPEAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 480 ~la~~~~~~g~~~~Ai~~l~kal~~~p~~--~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.-+.-+.+.|..++|+..|...-+-+-.. .-+.+..|.+..+.|+..+|+..|.++-.-.|..
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 34455567788889998888766554332 3456777889999999999999999887655443
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.75 E-value=22 Score=37.54 Aligned_cols=129 Identities=14% Similarity=0.070 Sum_probs=75.2
Q ss_pred ccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 004336 452 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 531 (760)
Q Consensus 452 ~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~ 531 (760)
|........+.....+++++|+-+.++..++.- +.--..+|.+.|+++++... .-++..+.....|.-.+|.
T Consensus 195 WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~~da~-- 266 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQHEAQ-- 266 (556)
T ss_pred HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccchhhh--
Confidence 334344455666788899999988888887753 33346678888888887542 2222233333333333331
Q ss_pred HHHHHhhcCCh--HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH------HHHHHHHHHHHHHcCCHHHHH
Q 004336 532 AEESIQMKRSF--EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK------GQALNNLGSVYVDCGQLDLAA 603 (760)
Q Consensus 532 ~~~al~l~p~~--~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~------~~a~~~Lg~~y~~~g~~~eA~ 603 (760)
.+.+.+. ..-..++.+...+ |++.+|.+.+.+..+. ..+.-++-..+....-|.+..
T Consensus 267 ----~rRDtnvl~YIKRRLAMCARkl-----------GrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 267 ----LRRDTNVLVYIKRRLAMCARKL-----------GRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred ----hhcccchhhHHHHHHHHHHHHh-----------hhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 3344667777777 9999999998887544 334444555555544444433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.55 E-value=9.9 Score=36.53 Aligned_cols=97 Identities=9% Similarity=-0.030 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS 656 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~ 656 (760)
.-+....|.+..+.|+...|+..|..+-+-.+. -+...-+.++...|.|++-....+.+
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepL--------------- 158 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPL--------------- 158 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhc---------------
Confidence 345556677777777777777777776653222 23334444555555554332222211
Q ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 657 EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 657 ~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
+...+|-...+.-.||..-++.|++.+|...|.....-
T Consensus 159 --------------a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 159 --------------AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred --------------cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11223444455556677777788888888888777653
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.33 E-value=4.5 Score=37.83 Aligned_cols=83 Identities=13% Similarity=-0.051 Sum_probs=67.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004336 426 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 505 (760)
Q Consensus 426 ~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~ 505 (760)
+..........++.+.+..++ ..+--+.|+.+.+..--|.++...|++.+|+..|+...+..
T Consensus 13 Li~~~~~aL~~~d~~D~e~lL------------------dALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAML------------------DALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHH------------------HHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 333444444567777777777 55666779999999999999999999999999999999888
Q ss_pred CCcHHHHHHHHHHHHHCCCHH
Q 004336 506 ASDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 506 p~~~~a~~~Lg~i~~~~g~~e 526 (760)
+..+...-.++.+++.+|+.+
T Consensus 75 ~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 GAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CCchHHHHHHHHHHHhcCChH
Confidence 888888888999999988853
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.21 E-value=20 Score=36.87 Aligned_cols=210 Identities=12% Similarity=0.065 Sum_probs=114.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC
Q 004336 394 LLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 473 (760)
Q Consensus 394 l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~ 473 (760)
+...+.++|+.-|++++++.|+-. -||- .|+..+-.+..+++++++-...+... +.-+..++..+-.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKg-eWGF-KALKQmiKI~f~l~~~~eMm~~Y~ql-----------LTYIkSAVTrNyS 104 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKG-EWGF-KALKQMIKINFRLGNYKEMMERYKQL-----------LTYIKSAVTRNYS 104 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccc-hhHH-HHHHHHHHHHhccccHHHHHHHHHHH-----------HHHHHHHHhcccc
Confidence 344588999999999999998764 3443 67777778888999988877666100 0112333332211
Q ss_pred cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh--CCCcHHHH----HHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHH
Q 004336 474 KGVLYFRQSLLLL-RLNCPEAAMRSLQLARQH--AASDHERL----VYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF 546 (760)
Q Consensus 474 ~~~~~~~la~~~~-~~g~~~~Ai~~l~kal~~--~p~~~~a~----~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~ 546 (760)
... .+--.-|. ...+.+--...|+..+.. +..+...| ..||.+|++.|.|..-.+.+++.-......
T Consensus 105 EKs--IN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e---- 178 (440)
T KOG1464|consen 105 EKS--INSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE---- 178 (440)
T ss_pred HHH--HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc----
Confidence 111 11111111 111222222233322221 11222222 357888888888877766666554322111
Q ss_pred HHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ch----HHH
Q 004336 547 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR----HT----RAH 618 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~----~~----~a~ 618 (760)
.+. .. ..+..+-..+|..--.+|-.+++-.+-...|++++.+. |+ ...
T Consensus 179 --------dGe---------dD-------~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIR 234 (440)
T KOG1464|consen 179 --------DGE---------DD-------QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIR 234 (440)
T ss_pred --------cCc---------hh-------hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHH
Confidence 000 00 00001113445555667888888888888999998743 22 222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 619 QGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 619 ~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
-.=|..+.+.|++++|-..|=.+.+.+.
T Consensus 235 ECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 235 ECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred HcCCccccccchHHHHHhHHHHHHhccc
Confidence 2335678888999988888877776655
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.95 E-value=1.8 Score=42.64 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS----DHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~----~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
++++..+.+|..|. ..+.++|+..+-+++++.+. +++++..|+.+++.+|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 67889999998887 67899999999999998654 5899999999999999999984
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.77 E-value=32 Score=35.70 Aligned_cols=202 Identities=13% Similarity=0.073 Sum_probs=110.0
Q ss_pred HHhcCCHHHHHHHHHHHHhhCC--CCcchhchHHHHHHHHHHHHHccCHHHHHHHH-hhhccccccCCcCcHHHHHHHHH
Q 004336 393 RLLRKEYDEAEHLFEAILTLSP--DYRMFEGRVAASQLHMLVREHIDNWTIADCWL-QLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P--~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l-~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
....+++++|+..|.++|...- +.......-.+...++.+|...|++..-.... +..+.|.....+.....++..++
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 3455699999999999986621 11112222356778999999999886544333 12222333344455556666666
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQM----- 538 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l----- 538 (760)
..|..++.+ +.-+..+...++..... ...-..+..++++.|+|.+|+......+.-
T Consensus 93 kf~~~~dsl-------------~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D 159 (421)
T COG5159 93 KFPYSSDSL-------------EDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD 159 (421)
T ss_pred hcCCCCccH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc
Confidence 655443322 22222222222211111 122245678899999999999988777642
Q ss_pred -cCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 539 -KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 539 -~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
.|+. ..+..-..+|... .+.......+..|........-| ++.-..-|....+..+|.-|-.+|-++++
T Consensus 160 DK~~Li~vhllESKvyh~i----rnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 160 DKINLITVHLLESKVYHEI----RNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred CccceeehhhhhHHHHHHH----HhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 1222 4555555555544 00111112222222222222222 33333346777888999999999999998
|
|
| >KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.52 Score=48.33 Aligned_cols=86 Identities=9% Similarity=0.170 Sum_probs=60.5
Q ss_pred eEEEEecCeEeehhHHHHhcCCH-HHHhhccCCCC---CCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHHH
Q 004336 183 NVVFRIHEEKIECDRQKFAALSA-PFSAMLNGSFM---ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEI 258 (760)
Q Consensus 183 dv~~~~~~~~~~~hr~~la~~s~-yf~amf~~~~~---e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~l 258 (760)
-|++.+++..|..-+.+|-+.-. -.-.||.+++. -..+.+.++-+ ||+...+++|+||--||.|.--+.=.|-||
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAd-Gi~s~vFRAILdYYksG~iRCP~~vSvpEL 175 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVAD-GMTSSCFRAILDYYQSGTMRCPSSVSVSEL 175 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhc-chhHHHHHHHHHHHhcCceeCCCCCchHHH
Confidence 35667777778877777765432 23457777652 23445778875 999999999999999999963333457777
Q ss_pred HHHHhhhChHh
Q 004336 259 LIFANKFCCER 269 (760)
Q Consensus 259 l~~a~~~~~~~ 269 (760)
-++.+++|+++
T Consensus 176 rEACDYLlipF 186 (438)
T KOG3840|consen 176 REACDYLLVPF 186 (438)
T ss_pred HhhcceEEeec
Confidence 77777777653
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.93 E-value=4.4 Score=50.04 Aligned_cols=147 Identities=14% Similarity=0.047 Sum_probs=97.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.+-...|+.+..+..++.++.+.|++++|+..-+++.-+ .|+....+.+++...+..++...|+..+.++..
T Consensus 964 v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 964 VMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred hhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 444566888888888888888888888888877766533 244556677777777777777777777777665
Q ss_pred hcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--
Q 004336 538 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-- 615 (760)
Q Consensus 538 l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-- 615 (760)
+.--. +. +.....+....+++.++...++++.|+.+.+.|++....
T Consensus 1044 l~~Ls---------~g-----------------------e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1044 LKLLS---------SG-----------------------EDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred hhccc---------cC-----------------------CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 42100 00 000111566678888888889999999999999884222
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 616 --------RAHQGLARVHFLKNNKTTAYEEMTKLIKK 644 (760)
Q Consensus 616 --------~a~~~La~~~~~~g~~~~A~~~l~~al~~ 644 (760)
..+..+++++...+++..|....+....+
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 45555666666666666666655544443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=87.66 E-value=3.1 Score=35.83 Aligned_cols=59 Identities=24% Similarity=0.132 Sum_probs=47.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 484 LLLRLNCPEAAMRSLQLARQHAAS---------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~~~p~---------~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
...+.|++.+|++.+.+.++.... ...+..++|.++...|++++|+..+++++++-...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346789999999998888765321 23567889999999999999999999999875443
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.57 E-value=16 Score=41.68 Aligned_cols=78 Identities=12% Similarity=-0.038 Sum_probs=59.6
Q ss_pred HHHHHhCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhhcCC
Q 004336 465 YQMLESDAPKGVLYFR--QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE-SIQMKRS 541 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~--la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~-al~l~p~ 541 (760)
...+..+|.++..... ++..+...+....+.-.+...+..+|.+..+..+||......|....++..+.+ +....|+
T Consensus 55 ~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~ 134 (620)
T COG3914 55 LLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPD 134 (620)
T ss_pred HccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 3344456666665433 577888888888899999999999999999999999988887777776666555 7777777
Q ss_pred h
Q 004336 542 F 542 (760)
Q Consensus 542 ~ 542 (760)
+
T Consensus 135 ~ 135 (620)
T COG3914 135 N 135 (620)
T ss_pred h
Confidence 7
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.54 E-value=6.4 Score=43.81 Aligned_cols=79 Identities=4% Similarity=-0.025 Sum_probs=61.5
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhcCCh
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH-CEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~-~eeAl~~~~~al~l~p~~ 542 (760)
|+.++...+.+...|.+......+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.++++.+|+.
T Consensus 94 yr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npds 173 (568)
T KOG2396|consen 94 YRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDS 173 (568)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCC
Confidence 3677777777888888877777777778888888888888888888888877766655554 888888888888888877
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.25 E-value=30 Score=39.11 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------cchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcc
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKI---------RHTRAHQGLARVHFLKNN-KTTAYEEMTKLIKKAR 646 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~---------~~~~a~~~La~~~~~~g~-~~~A~~~l~~al~~~~ 646 (760)
.--+..+|.++...|+...|..+|...++. -++.+++.+|.++...|. .+++..++.++-+...
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 455677899999999999999999988851 123799999999999998 8899988888766553
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=86.91 E-value=4.5 Score=33.46 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH---HHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY---EGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~---Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
....|.-++..++.++|+..++++++..++..+.+.. +..+|.+.|+|++++.+.-+-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778999999999999999998887765554 556788999999999887665544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.89 E-value=9.7 Score=43.57 Aligned_cols=101 Identities=10% Similarity=-0.011 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
.|+.|..++..- +|..++++|...+..-|.+.+-..-......+..+|....+.+.|.+++
T Consensus 357 LWn~A~~~F~~~-------~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~------------ 417 (872)
T KOG4814|consen 357 LWNTAKKLFKME-------KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVY------------ 417 (872)
T ss_pred HHHhhHHHHHHH-------HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH------------
Confidence 455555555555 9999999999999988877533333456778899999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
+.+-+.+|.++...+....+...-|.-++|+.+.......
T Consensus 418 ------~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 418 ------QEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred ------HHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 8888899999988888888888999999999988877654
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=86.64 E-value=9 Score=35.24 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHh-hCCC-ChHHHHHHHHHHHHcC
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQ-LDPL-RVYPYRYRAAVLMDSH 693 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~-l~p~-~~~~~~~La~~~~~~g 693 (760)
...+++|.++....+. .+..+.+..++..++ -+|. .-...++||..+++.|
T Consensus 33 ~s~f~lAwaLV~S~~~---------------------------~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk 85 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDT---------------------------EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLK 85 (149)
T ss_pred HHHHHHHHHHHcccch---------------------------HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHh
Confidence 5667777777766554 223455555666654 3343 3456788999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHH
Q 004336 694 KENEAIAELSRAIAFKADLHLLH-LRAAFHEH 724 (760)
Q Consensus 694 ~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~ 724 (760)
+|+.|+.+.+..++..|++..+. +...+..+
T Consensus 86 eY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~ 117 (149)
T KOG3364|consen 86 EYSKSLRYVDALLETEPNNRQALELKETIEDK 117 (149)
T ss_pred hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 99999999999999999998665 44444433
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.47 E-value=1.4 Score=45.88 Aligned_cols=89 Identities=10% Similarity=-0.084 Sum_probs=69.0
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004336 667 DLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR--AAFHEHTGDVLGALRDCRAALSVDPN 744 (760)
Q Consensus 667 ~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~--a~~~~~~g~~~~A~~~~~~aL~l~P~ 744 (760)
.|.++....|+++..|...+.-..+.|.+.+--..+.++++.+|.+..+|.- +.-+...++++.+...+.++|.++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3445566678888888777766677778888888899999999999888844 33344558999999999999999999
Q ss_pred cHHHHHHHHHh
Q 004336 745 DQEMLELHSRV 755 (760)
Q Consensus 745 ~~~~l~~~~r~ 755 (760)
+|.++-.|-|+
T Consensus 175 ~p~iw~eyfr~ 185 (435)
T COG5191 175 SPRIWIEYFRM 185 (435)
T ss_pred CchHHHHHHHH
Confidence 99887666554
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.93 E-value=4.6 Score=41.73 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=40.9
Q ss_pred HHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 004336 429 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 508 (760)
Q Consensus 429 lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~ 508 (760)
+-..+.+.++++.|.... .+.+..+|.++.-+...|.+|.+.|.+.-|++.++..++..|++
T Consensus 187 lk~~~~~e~~~~~al~~~------------------~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 187 LKAALLRELQWELALRVA------------------ERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHhhchHHHHHHH------------------HHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 334455556666666655 66666666666666666666666666666666666666666666
Q ss_pred HHHH
Q 004336 509 HERL 512 (760)
Q Consensus 509 ~~a~ 512 (760)
+.+-
T Consensus 249 ~~a~ 252 (269)
T COG2912 249 PIAE 252 (269)
T ss_pred hHHH
Confidence 5543
|
|
| >PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] | Back alignment and domain information |
|---|
Probab=85.67 E-value=1.7 Score=36.14 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=29.8
Q ss_pred CChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcC
Q 004336 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~ 283 (760)
++.+.+.+|+.+|+.|+++.|.+.|+..++..+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 6788999999999999999999999999998774
|
It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A .... |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.24 E-value=51 Score=34.33 Aligned_cols=266 Identities=13% Similarity=0.001 Sum_probs=138.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HH-HHHH
Q 004336 479 FRQSLLLLRLNCPEAAMRSLQLARQHAAS--------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EA-FFLK 548 (760)
Q Consensus 479 ~~la~~~~~~g~~~~Ai~~l~kal~~~p~--------~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a-~~~l 548 (760)
..+|+-..+.+++++|+..|.+.+..... ...+...++.+|...|++..--+.....-+...++ .+ -...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 45666777889999999999999876322 12456789999999998865544443333221111 00 0001
Q ss_pred HHHHHc-ccCCCCcchhhhhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----c--c--hH
Q 004336 549 AYALAD-SSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKI----R--H--TR 616 (760)
Q Consensus 549 a~~l~~-~~~~~~~~~~~~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----~--~--~~ 616 (760)
-..+.+ ....+.+.+..+......++...+--+. ...-..+...+++.|+|.+|+......+.. + + ..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 111111 1111122222333333333333322111 344556788899999999999988777652 1 1 16
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----cCcHHHHHH-HH-----hcCCHHHHHHHHHHHHhhCC---CChHHH
Q 004336 617 AHQGLARVHFLKNNKTTAYEEMTKLIKKA-----RNNASAYEK-RS-----EYCDRELTRADLEMVTQLDP---LRVYPY 682 (760)
Q Consensus 617 a~~~La~~~~~~g~~~~A~~~l~~al~~~-----~~~~~~~~~-~~-----~~~~~~~A~~~l~kal~l~p---~~~~~~ 682 (760)
++..-..+|+...+..++..-+..+-... |+.-.+-.. ++ .-.++.-|..+|-++++-.. .+..+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 77777888999888888887777654432 211111111 10 11356677777777765422 223333
Q ss_pred HHHHH---HHHHcCCHHHHHHHHHHHHHcC-CCcHHHH-HH--HHHHH--HcCCHHHHHHHHHHHHhcCCC
Q 004336 683 RYRAA---VLMDSHKENEAIAELSRAIAFK-ADLHLLH-LR--AAFHE--HTGDVLGALRDCRAALSVDPN 744 (760)
Q Consensus 683 ~~La~---~~~~~g~~~eAi~~l~kal~~~-p~~~~~~-l~--a~~~~--~~g~~~~A~~~~~~aL~l~P~ 744 (760)
..+-. .-...+..++-...++.--.+. -++..+. ++ +..+. .+.+|..|+..|+.-+..+|-
T Consensus 247 ~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 247 VSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 33322 2233344444333332222222 1111222 22 22221 225678888888777766653
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=85.17 E-value=4.9 Score=49.16 Aligned_cols=85 Identities=20% Similarity=0.092 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HH----HHHHHHc-CCHHHHHHHH
Q 004336 662 ELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LR----AAFHEHT-GDVLGALRDC 735 (760)
Q Consensus 662 ~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~----a~~~~~~-g~~~~A~~~~ 735 (760)
++|+..|++. .-.|.-+--|...|.+|.++|+++|-++.|.-|+...|+.+.+- ++ -.++... .+...|....
T Consensus 536 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (932)
T PRK13184 536 TQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFM 614 (932)
T ss_pred HHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544442 22344444455556677777777777777777777777766443 22 2233222 3334444555
Q ss_pred HHHHhcCCCcHH
Q 004336 736 RAALSVDPNDQE 747 (760)
Q Consensus 736 ~~aL~l~P~~~~ 747 (760)
--++..-|....
T Consensus 615 ~~~~~~~~~~~~ 626 (932)
T PRK13184 615 LLALWIAPEKIS 626 (932)
T ss_pred HHHHHhCccccc
Confidence 555566665543
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.73 E-value=4.4 Score=41.87 Aligned_cols=73 Identities=16% Similarity=0.087 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 683 RYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 683 ~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
.++-.++...++++.|....++.+.++|+++.-+ =+|.+|.++|.+..|++.++..++.-|+++.+..+..++
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3445566777777777777777777777766333 447777777777777777777777777777665544433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.72 E-value=3.5 Score=45.28 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=74.6
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
-..+..++...|.++......+.++..+|+|+.|...+.-+-..-.....+...+-.-+...|++++|....+-.+...-
T Consensus 309 s~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 309 SQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI 388 (831)
T ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc
Confidence 34468888889999999999999999999999998887665554444445566666777888999999888877775432
Q ss_pred ChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh
Q 004336 541 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 579 (760)
Q Consensus 541 ~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~ 579 (760)
+.+-....+ ..+....+.++++....++.
T Consensus 389 e~~ei~~ia----------a~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 389 EDEEVLTVA----------AGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred CChhheeee----------cccHHHHhHHHHHHHHHHHH
Confidence 221001111 11233457777777777666
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.91 E-value=19 Score=41.02 Aligned_cols=119 Identities=12% Similarity=-0.063 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHH
Q 004336 402 AEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 481 (760)
Q Consensus 402 A~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~l 481 (760)
++..+...+.++|.++.+. -+.. +.......+....+...+ ...+..+|++..+..++
T Consensus 50 ~~~a~~~~~~~~~~~~~ll---la~~-lsi~~~~~~~~~~~~~~~------------------~~~l~~~~~~~~~~~~L 107 (620)
T COG3914 50 AIYALLLGIAINDVNPELL---LAAF-LSILLAPLADSTLAFLAK------------------RIPLSVNPENCPAVQNL 107 (620)
T ss_pred HHHHHHccCccCCCCHHHH---HHHH-HHhhccccccchhHHHHH------------------hhhHhcCcccchHHHHH
Confidence 4555555555666665111 1111 455555555555555555 78888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHH-HHHhCCCcHHHHHHH------HHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 482 SLLLLRLNCPEAAMRSLQL-ARQHAASDHERLVYE------GWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 482 a~~~~~~g~~~~Ai~~l~k-al~~~p~~~~a~~~L------g~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+......|....+...+.. +....|++......+ |......|+..++....+++..+.|.+
T Consensus 108 ~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 108 AAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 8887777777666666555 777788877665544 777888888888888888888888877
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.01 E-value=71 Score=34.19 Aligned_cols=261 Identities=11% Similarity=0.023 Sum_probs=133.9
Q ss_pred hcCCHHHHHHHHHHHHhh--CCCC--cchhchHHHHHHHHHHHHHccCHHHHHHHHh-hhccccccCCcCcHHHHHHHHH
Q 004336 395 LRKEYDEAEHLFEAILTL--SPDY--RMFEGRVAASQLHMLVREHIDNWTIADCWLQ-LYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l--~P~~--~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~-l~~~~~~~~d~~sl~~~~~al~ 469 (760)
..+++++++..|..++.. .|.. ......-.+...+|.++.+.|+.++-..++. ....|.......+...++..++
T Consensus 16 ~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd 95 (411)
T KOG1463|consen 16 SVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVD 95 (411)
T ss_pred ccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344778888888888874 1222 1222333566778999999998876655441 1112222233333333344433
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----c
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQM----K 539 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l----~ 539 (760)
..+.- -+..+.-+..+...++-.... ...-..+..+|++.++|.+|+......++- +
T Consensus 96 ~~~~~-------------~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD 162 (411)
T KOG1463|consen 96 MFLKI-------------DDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD 162 (411)
T ss_pred HHccC-------------CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 32211 111112222222222211111 112245788899999999999888777642 2
Q ss_pred CCh---HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh-------ccH----HHHHHHHHHHHHHcCCHHHHHHH
Q 004336 540 RSF---EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR-------LRK----GQALNNLGSVYVDCGQLDLAADC 605 (760)
Q Consensus 540 p~~---~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~-------l~~----~~a~~~Lg~~y~~~g~~~eA~~~ 605 (760)
-.. +.+..-..++... .++.+|......+ .-| +..-..=|.++....+|.-|..+
T Consensus 163 DK~lLvev~llESK~y~~l-----------~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSY 231 (411)
T KOG1463|consen 163 DKILLVEVHLLESKAYHAL-----------RNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSY 231 (411)
T ss_pred cccceeeehhhhhHHHHHH-----------hcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHH
Confidence 111 3343334444443 3344443333222 111 33333447777788999999999
Q ss_pred HHHHHhh----cc-h---HHHHHHHHHHHHcCCHHHHHHHHHH--HHHhccCcHHHHHHHH------hcCCHHHHHHHHH
Q 004336 606 YSNALKI----RH-T---RAHQGLARVHFLKNNKTTAYEEMTK--LIKKARNNASAYEKRS------EYCDRELTRADLE 669 (760)
Q Consensus 606 ~~~Al~~----~~-~---~a~~~La~~~~~~g~~~~A~~~l~~--al~~~~~~~~~~~~~~------~~~~~~~A~~~l~ 669 (760)
|=+|++- +. . .++-.+-.+-...+..++-...+.. +++.......+....+ ...+++.|...|.
T Consensus 232 FyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk 311 (411)
T KOG1463|consen 232 FYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYK 311 (411)
T ss_pred HHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence 9999982 22 2 3444455555666766665444432 3333322222222221 1235667777777
Q ss_pred HHHhhCCCCh
Q 004336 670 MVTQLDPLRV 679 (760)
Q Consensus 670 kal~l~p~~~ 679 (760)
.-+..||--.
T Consensus 312 ~eL~~D~ivr 321 (411)
T KOG1463|consen 312 KELAEDPIVR 321 (411)
T ss_pred HHHhcChHHH
Confidence 7666666433
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.32 E-value=75 Score=36.35 Aligned_cols=148 Identities=13% Similarity=0.075 Sum_probs=93.1
Q ss_pred cCCHHHHHHHHHHHHhh--------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----c----------
Q 004336 596 CGQLDLAADCYSNALKI--------------RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKA-----R---------- 646 (760)
Q Consensus 596 ~g~~~eA~~~~~~Al~~--------------~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~-----~---------- 646 (760)
..-|++|...|.-|... .|...+..++.+...+|+.+-|.+..++++-.. |
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34566777777776652 122677888888888888888888887755321 1
Q ss_pred ------CcHHHHHHHH-------hcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHH-----H
Q 004336 647 ------NNASAYEKRS-------EYCDRELTRADLEMVTQLDPL-RVYPYRYRAAVLM-DSHKENEAIAELSRA-----I 706 (760)
Q Consensus 647 ------~~~~~~~~~~-------~~~~~~~A~~~l~kal~l~p~-~~~~~~~La~~~~-~~g~~~eAi~~l~ka-----l 706 (760)
.+-..|..+. .-|=+.-|.+..+..+.++|. ++.....+..+|. +..+|.=-|+.++.. +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 2333333332 235677888888888999998 8877666665554 334444444444333 2
Q ss_pred HcCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCC
Q 004336 707 AFKADLHLLHLRAAFHEHTGD---VLGALRDCRAALSVDP 743 (760)
Q Consensus 707 ~~~p~~~~~~l~a~~~~~~g~---~~~A~~~~~~aL~l~P 743 (760)
..-|+...-.-.+.+|..... .+.|...+.+|+...|
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 334554433333666666443 6788899999998877
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.23 E-value=1.7 Score=27.62 Aligned_cols=23 Identities=13% Similarity=-0.007 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Q 004336 511 RLVYEGWILYDTSHCEEGLRKAE 533 (760)
Q Consensus 511 a~~~Lg~i~~~~g~~eeAl~~~~ 533 (760)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555555555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.03 E-value=4.4 Score=45.16 Aligned_cols=97 Identities=15% Similarity=-0.017 Sum_probs=72.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHH
Q 004336 590 GSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRAD 667 (760)
Q Consensus 590 g~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~ 667 (760)
|.--+..+....|+..|.+++...|. ..+.+.+.++.+.+-. |+.-.|+.+
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~---------------------------~d~~~AlrD 433 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR---------------------------GDSYLALRD 433 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc---------------------------ccHHHHHHh
Confidence 33334445567778888887775554 5555666666655433 455567778
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Q 004336 668 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH 713 (760)
Q Consensus 668 l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~ 713 (760)
...|++++|....+++.|+.++...+++.+|+.....+....|.+.
T Consensus 434 ch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 434 CHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 8889999999999999999999999999999999888777777544
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=82.02 E-value=17 Score=30.17 Aligned_cols=62 Identities=10% Similarity=0.011 Sum_probs=48.6
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 446 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l 446 (760)
.+......|.-++...+.++|+..++++|+..++.+ .+..++-.+..++...|++.+.+.+.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~---~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE---DRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777788899999999999999998865 33456666777888899999988877
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.91 E-value=90 Score=34.67 Aligned_cols=158 Identities=13% Similarity=0.040 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc---------------C
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR---------------N 647 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~---------------~ 647 (760)
++.|+.........++-+.|+...+++....|. .+..++..|...++-++-..+|+++++.-. +
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~ 380 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDN 380 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccC
Confidence 667777777777888889998888888776554 566677777777776666666666443211 1
Q ss_pred cH----HHHHH-HHh--------------cCCHHHHHHHHHHHHhhCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHHHH
Q 004336 648 NA----SAYEK-RSE--------------YCDRELTRADLEMVTQLDPLRVYPYRYRAA-VLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 648 ~~----~~~~~-~~~--------------~~~~~~A~~~l~kal~l~p~~~~~~~~La~-~~~~~g~~~eAi~~l~kal~ 707 (760)
+. ..... ..+ -.-.+.|...|.++-...-.....|..-|. -+...|++.-|-..|+-.+.
T Consensus 381 N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~ 460 (660)
T COG5107 381 NFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLL 460 (660)
T ss_pred CccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHH
Confidence 11 11111 100 011234555555554443223333333333 35667888888999998888
Q ss_pred cCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhc
Q 004336 708 FKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 708 ~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
..|+.+.+... -.++...++-..|...|+++++.
T Consensus 461 ~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 461 KFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 88888866544 44555667888888888877653
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=81.83 E-value=1.2e+02 Score=36.06 Aligned_cols=153 Identities=9% Similarity=-0.054 Sum_probs=87.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhc---ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH---HHHHHHHhcC
Q 004336 589 LGSVYVDCGQLDLAADCYSNALKIR---HT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA---SAYEKRSEYC 659 (760)
Q Consensus 589 Lg~~y~~~g~~~eA~~~~~~Al~~~---~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~---~~~~~~~~~~ 659 (760)
++.......+.+.|...+.+..... .. .+...+|.-....+...+|...+..+.....+.. +-+......+
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHcc
Confidence 3444455677788888887654422 11 3344444444444335566666665443322111 1111112346
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------C---CcH----
Q 004336 660 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK-------------------A---DLH---- 713 (760)
Q Consensus 660 ~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~-------------------p---~~~---- 713 (760)
+++.....+..............+.+|.++...|+.++|...|+++.... + ...
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~ 406 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALT 406 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhc
Confidence 66666555555433333556777888998888999999999988875210 0 000
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004336 714 --LLHLRAAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 714 --~~~l~a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
...-++..+...|+...|...+..++..
T Consensus 407 ~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~ 436 (644)
T PRK11619 407 QGPEMARVRELMYWNMDNTARSEWANLVAS 436 (644)
T ss_pred cChHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 0012256666779999999988887765
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.44 E-value=5.7 Score=44.32 Aligned_cols=79 Identities=11% Similarity=-0.057 Sum_probs=70.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRL---NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~---g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
+.+++...|.....+-+.+.++++. |+.-.|+.....|+.++|....+++.|+.++...+++.+|+.....+....|
T Consensus 397 ~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 397 YSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 3888888899999999999988875 5666788888899999999999999999999999999999999998888888
Q ss_pred Ch
Q 004336 541 SF 542 (760)
Q Consensus 541 ~~ 542 (760)
.+
T Consensus 477 td 478 (758)
T KOG1310|consen 477 TD 478 (758)
T ss_pred hh
Confidence 66
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.41 E-value=1.3e+02 Score=36.06 Aligned_cols=261 Identities=12% Similarity=-0.042 Sum_probs=141.2
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HCCCHHHHHHHHHHHHh
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY---DTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~---~~g~~eeAl~~~~~al~ 537 (760)
+..++.-+..++.+...+..|-.++...|++++-...-+++.++.|..+..|.....-.. ..+...++...|++++.
T Consensus 99 i~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 99 IRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 455777778888888889999999999999998888888888888888887766543322 34778888899999986
Q ss_pred hcCChHHHHHHHHHHHcccCC---CCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 538 MKRSFEAFFLKAYALADSSQD---SSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 538 l~p~~~a~~~la~~l~~~~~~---~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
-.-....|...+......... ....+.....+++|+......... ...+...-..|...-..++-+.++...+
T Consensus 179 dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el 258 (881)
T KOG0128|consen 179 DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVREL 258 (881)
T ss_pred ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 433324444444443333221 112223333444444444333222 4455555566666666677777777776
Q ss_pred hhcch-----HHHHHHH--H-HHHHcCCHHHHHHHHHHHHHhccCc----HHHHHHHH-------hcCCHHHHHHHHHHH
Q 004336 611 KIRHT-----RAHQGLA--R-VHFLKNNKTTAYEEMTKLIKKARNN----ASAYEKRS-------EYCDRELTRADLEMV 671 (760)
Q Consensus 611 ~~~~~-----~a~~~La--~-~~~~~g~~~~A~~~l~~al~~~~~~----~~~~~~~~-------~~~~~~~A~~~l~ka 671 (760)
...-+ ..+.... . ......+++.|...+.+.+...... ...+.... ..|+.-.-...++++
T Consensus 259 ~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~ 338 (881)
T KOG0128|consen 259 KQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERA 338 (881)
T ss_pred hccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 63211 1222222 1 1122344444444444333222211 11111111 123333444556666
Q ss_pred HhhCCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 004336 672 TQLDPLRVYPYRYRAAVL-MDSHKENEAIAELSRAIAFKADLHLLHLRAAF 721 (760)
Q Consensus 672 l~l~p~~~~~~~~La~~~-~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~ 721 (760)
+.-.+.+...|...+... ...+-.+.+...+.+++...|-...++-++.+
T Consensus 339 ~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rall 389 (881)
T KOG0128|consen 339 VAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALL 389 (881)
T ss_pred HHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHH
Confidence 666666655555544322 23333444555566666666666666644433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.17 E-value=86 Score=38.95 Aligned_cols=43 Identities=19% Similarity=0.070 Sum_probs=25.7
Q ss_pred hHHHHHHhhhHhhccH-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 567 SLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 567 ~~leeAl~~~~~~l~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~A 609 (760)
+.+.+|+..|.-..++ -..+...|..+...+.+++|.-.|+.+
T Consensus 922 ~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~ 965 (1265)
T KOG1920|consen 922 GLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERC 965 (1265)
T ss_pred ccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 5556666666555333 455556666666667777666666554
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.76 E-value=1.1e+02 Score=35.02 Aligned_cols=128 Identities=14% Similarity=0.053 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHhhCC-CCc-----chhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh
Q 004336 397 KEYDEAEHLFEAILTLSP-DYR-----MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 470 (760)
Q Consensus 397 g~~~eA~~~~~~aL~l~P-~~~-----~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~ 470 (760)
..|++|...|.-+....+ ++. .-.-.++.+..++.+...+|+.+.|..++..+-. .+.+++.-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly-----------~~d~a~hp 320 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY-----------VFDRALHP 320 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH-----------HHHHHhcc
Confidence 356677777776654432 211 0001147888999999999999999887722111 12333331
Q ss_pred C--------------CCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH-HCCCHHHHHHH
Q 004336 471 D--------------APKGV---LYFRQSLLLLRLNCPEAAMRSLQLARQHAAS-DHERLVYEGWILY-DTSHCEEGLRK 531 (760)
Q Consensus 471 ~--------------p~~~~---~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~-~~~a~~~Lg~i~~-~~g~~eeAl~~ 531 (760)
. |.+-. +.++.-..+.+.|.+..|.++.+-.++++|. ++-+...+-.+|. ...+|+=-+..
T Consensus 321 ~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~ 400 (665)
T KOG2422|consen 321 NFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIEL 400 (665)
T ss_pred ccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHH
Confidence 1 33322 3344555677889999999999999999998 7776666655554 34445444444
Q ss_pred HHHH
Q 004336 532 AEES 535 (760)
Q Consensus 532 ~~~a 535 (760)
++..
T Consensus 401 ~~~~ 404 (665)
T KOG2422|consen 401 SNEP 404 (665)
T ss_pred HHHH
Confidence 4443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.14 E-value=2.3 Score=26.94 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQL 500 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~k 500 (760)
.+.+.+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678899999999999999998763
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.14 E-value=8 Score=40.45 Aligned_cols=65 Identities=8% Similarity=-0.062 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
...++..++..+...|+++.++..+++.+..+|.+-..|..+-..|+..|+...|+..|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35577788999999999999999999999999999999999999999999999999999988653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 9e-16
Identities = 58/403 (14%), Positives = 113/403 (28%), Gaps = 88/403 (21%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT-IAD 443
+LG L + +A F A + PD + A
Sbjct: 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDN-------------------YIAYYRRAT 45
Query: 444 CWLQLYDRWSSVDDIGSLSVIYQM---LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL 500
+L + +++ D L+ D ++ LLL+ + A +
Sbjct: 46 VFLAMGKSKAALPD-------LTKVIALKMDFTAA--RLQRGHLLLKQGKLDEAEDDFKK 96
Query: 501 ARQ---------------HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEA 544
+ A + +RL + +D + + ++ +++ E
Sbjct: 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156
Query: 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLD 600
L+A + A+ + +A + ++Y G +
Sbjct: 157 RELRAECFIKEGE-----------PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205
Query: 601 LAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY 658
L+ LK+ H R +V K + K +A + Y
Sbjct: 206 LSLSEVRECLKLDQDHKRCFAHYKQV---------------KKLNKLIESAEELIRDGRY 250
Query: 659 CDRELTRADLEMVTQLDP----LRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL 714
+ E V + +P V K EAI S + + D
Sbjct: 251 ---TDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN 307
Query: 715 LHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756
RA + A++D AA + NDQ++ E +
Sbjct: 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 37/265 (13%), Positives = 85/265 (32%), Gaps = 42/265 (15%)
Query: 507 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALADSSQDSSCSSTV 565
+D E+ + G L + L + ++ ++ A++ +A +
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK-------- 52
Query: 566 VSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHT 615
+ AL A G + + G+LD A D + LK
Sbjct: 53 ---SKAALPDLTKVIALKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105
Query: 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLD 675
+ +++ +++ R+ A ++Y L+ + ++
Sbjct: 106 EEKEAESQLVKADE------------MQRLRSQALDAFDGADY---TAAITFLDKILEVC 150
Query: 676 PLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH-LLHLRAAFHEHTGDVLGALRD 734
RA + + +AI++L A K+D + + + GD +L +
Sbjct: 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210
Query: 735 CRAALSVDPNDQEMLELHSRVYSHE 759
R L +D + + + +V
Sbjct: 211 VRECLKLDQDHKRCFAHYKQVKKLN 235
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 12/172 (6%)
Query: 585 ALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLI 642
LNN + + G+ + A ++A++ ++ +++ N ++ K I
Sbjct: 40 YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTI 99
Query: 643 K------KARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696
+ A K E E ++P + R
Sbjct: 100 EYYQKSLTEHRTADILTKLRNA---EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156
Query: 697 EAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
A+ + I + + RAA A+ DC A+ DPN
Sbjct: 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 208
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 35/253 (13%), Positives = 70/253 (27%), Gaps = 31/253 (12%)
Query: 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLL 569
++ EG Y +E + ++ ++ + +A A + +
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGE-----------Y 54
Query: 570 EDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQ 619
E A+ R + + G ++ + H+
Sbjct: 55 ETAISTLNDAVEQGREMR----ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR 110
Query: 620 GLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR-SEYCDR-ELTRA--DLEMVTQLD 675
A + N ++ A EY + + A + +
Sbjct: 111 -TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169
Query: 676 PLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRD 734
P Y RAA L EAIA+ ++AI + ++ +A + AL
Sbjct: 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229
Query: 735 CRAALSVDPNDQE 747
AA + D
Sbjct: 230 LDAARTKDAEVNN 242
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 33/248 (13%), Positives = 58/248 (23%), Gaps = 53/248 (21%)
Query: 473 PKGVLYFRQSLLLLRLNCPEAAM----RSLQLARQHAASDHERLVYEGWILYDTSHCEEG 528
++ E A+ +++ R+ A +
Sbjct: 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI----SKSFARIGNAYHK 91
Query: 529 LRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR----KGQ 584
L +++I+ + A L E LK K +
Sbjct: 92 LGDLKKTIEYYQKSLTEHRTADILTKLRN-----------AEKELKKAEAEAYVNPEKAE 140
Query: 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKK 644
G Y A Y+ +K Y
Sbjct: 141 EARLEGKEYFTKSDWPNAVKAYTEMIKR---------------APEDARGY--------- 176
Query: 645 ARNN-ASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 703
+N A+A K + AD + DP V Y +A + + A+ L
Sbjct: 177 --SNRAAALAKLMSF---PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231
Query: 704 RAIAFKAD 711
A A+
Sbjct: 232 AARTKDAE 239
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 5e-07
Identities = 30/192 (15%), Positives = 53/192 (27%), Gaps = 33/192 (17%)
Query: 478 YFRQSLLLLRLNCPEAAMRSLQLA---RQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 534
Y S R+ + L+ Q + ++H IL + E+ L+KAE
Sbjct: 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT----ADILTKLRNAEKELKKAEA 130
Query: 535 SIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKC--------PSDRLRKGQA 585
+ E L+ S +A+K P D +
Sbjct: 131 EAYVNPEKAEEARLEGKEYFTKSD-----------WPNAVKAYTEMIKRAPED----ARG 175
Query: 586 LNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIK 643
+N + A + A++ RA+ A +A E +
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 644 KARNNASAYEKR 655
K + R
Sbjct: 236 KDAEVNNGSSAR 247
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 5e-15
Identities = 38/394 (9%), Positives = 93/394 (23%), Gaps = 49/394 (12%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 444
+ ++ +A + L+ D+ + D
Sbjct: 75 VLLRRASANEGLGKFADAMFDLSVLS-LNGDFNDASIEPMLERNLNKQAMSKLKEKFGDI 133
Query: 445 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR---SLQLA 501
Q +F L + + L
Sbjct: 134 DTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG 193
Query: 502 RQHAASDHERLVYEGWILYD--TSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQD 558
+ + + EE L K E ++K + +
Sbjct: 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND- 252
Query: 559 SSCSSTVVSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 610
A + P + + + D + + AL
Sbjct: 253 ----------PLGAHEDIKKAIELFPRV-----NSYIYMALIMADRNDSTEYYNYFDKAL 297
Query: 611 KI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTR--- 665
K+ ++ + +++F+ N A ++ K + N Y + + +
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA-CLAYRENKFDD 356
Query: 666 --ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH------- 716
+ P + A +L D + ++A+ + AI + L ++
Sbjct: 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416
Query: 717 ---LRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
+ + + A A +DP ++
Sbjct: 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ 450
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 6e-14
Identities = 29/288 (10%), Positives = 77/288 (26%), Gaps = 39/288 (13%)
Query: 488 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 547
E + + L + G + + +++I++ ++
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIY 275
Query: 548 KAYALADSSQDSSCSSTVVSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQL 599
A +AD + + ++ + G +
Sbjct: 276 MALIMADRND-----------STEYYNYFDKALKLDSNN----SSVYYHRGQMNFILQNY 320
Query: 600 DLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE 657
D A + A ++ + + LA + + +N ++ +K +E
Sbjct: 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAE 380
Query: 658 -YCDR---ELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE---------NEAIAELSR 704
D+ + ++ +L+ Y A ++ + EA L +
Sbjct: 381 ILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440
Query: 705 AIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 751
A + A D+ A+ + + +E L+
Sbjct: 441 ASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 4e-10
Identities = 46/363 (12%), Positives = 97/363 (26%), Gaps = 69/363 (19%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGR-VAASQLHMLVREHIDNWTIAD 443
A G K+YD+A + L L D + + L ++ ++ T A
Sbjct: 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDL-KKVVEMSTKA- 65
Query: 444 CWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503
L+L +S V R++ L AM L +
Sbjct: 66 --LELKPDYSKV----------------------LLRRASANEGLGKFADAMFDLSVLSL 101
Query: 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 563
+ ++ + E L + M + E F A A ++ S+ +
Sbjct: 102 N-------------GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA 148
Query: 564 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLAR 623
++ L + + + +L Y + +
Sbjct: 149 KERKDKQENL-----------PSVTSMASFFGIFKPELTFANYDESNE------------ 185
Query: 624 VHFLKNNKTTAYEEMTKLIKKARNNA-SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPY 682
+ K ++ + A ++ K + + +L +L
Sbjct: 186 ---ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL--DKNNEDEKLKEKLAISL 240
Query: 683 RYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVD 742
+ + A ++ +AI ++ A D AL +D
Sbjct: 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD 300
Query: 743 PND 745
N+
Sbjct: 301 SNN 303
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 33/256 (12%), Positives = 74/256 (28%), Gaps = 35/256 (13%)
Query: 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 532
P+ Y +L++ N A + +++ + G + + + ++ +
Sbjct: 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327
Query: 533 EESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALN 587
+++ ++ + A ++ +D S+ RK + N
Sbjct: 328 DKAKELDPENIFPYIQLACLAYRENK-----------FDDCETLFSEAKRKFPEAPEVPN 376
Query: 588 NLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 647
+ D D A Y A+++ +N Y + L+ KA
Sbjct: 377 FFAEILTDKNDFDKALKQYDLAIEL---------------ENKLDGIYVGIAPLVGKATL 421
Query: 648 NASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 707
+ LE ++LDP A + + +EAI +
Sbjct: 422 LTRNPTVE----NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477
Query: 708 FKADLHLLHLRAAFHE 723
+ F E
Sbjct: 478 LARTMEEKLQAITFAE 493
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 37/334 (11%), Positives = 88/334 (26%), Gaps = 77/334 (23%)
Query: 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQL 428
L++ E + + ++ G + L+ + A + + L P +
Sbjct: 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM------ 276
Query: 429 HMLVREHIDNWTIADCWLQL--YDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 486
A + + L+ D+ +Y+ + +
Sbjct: 277 -------------ALIMADRNDST--------EYYNYFDKALKLDSNNSSVYYHRGQMNF 315
Query: 487 RLNCPEAAM----RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RS 541
L + A ++ +L ++ + + Y + ++ E+ + +
Sbjct: 316 ILQNYDQAGKDFDKAKELDPENIFPYIQL----ACLAYRENKFDDCETLFSEAKRKFPEA 371
Query: 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKC--------PSDRLRKGQALNNLGSVY 593
E A L D + + ALK + +
Sbjct: 372 PEVPNFFAEILTDKND-----------FDKALKQYDLAIELENKL----DGIYVGIAPLV 416
Query: 594 ---------VDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLI 642
A + A K+ R +A GLA++ + + A +
Sbjct: 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476
Query: 643 KKARNNASAYEKRSEYCDRELTRADLEMVTQLDP 676
AR + + E + + + DP
Sbjct: 477 DLARTMEEKLQAIT---FAEAAKVQQRI--RSDP 505
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 14/152 (9%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLI 642
AL + G+ + + D A Y+ AL+++ + L+ + + E TK +
Sbjct: 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKAL 66
Query: 643 K------KARNN-ASAYEKRSEYCDRELTRADLEMVTQLD---PLRVYPYRYRAAVLMDS 692
+ K ASA E ++ DL +++ + P R
Sbjct: 67 ELKPDYSKVLLRRASANEGLGKF---ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAM 123
Query: 693 HKENEAIAELSRAIAFKADLHLLHLRAAFHEH 724
K E ++ A A +L + +
Sbjct: 124 SKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 5e-15
Identities = 42/397 (10%), Positives = 94/397 (23%), Gaps = 62/397 (15%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 444
A + + +A + +L+ D+ + + N ++
Sbjct: 95 ALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD 153
Query: 445 WLQLYDRWSSVDDIGS-LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503
+ S + S + LE + + + LL +LQ
Sbjct: 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS--------DALQRLYS 205
Query: 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCS 562
+ + T L ++ + A +
Sbjct: 206 ATDEGYLV--ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN----- 258
Query: 563 STVVSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-- 612
L DA P+ + L D + A+ +
Sbjct: 259 ------LLDAQVLLQESINLHPTP-----NSYIFLALTLADKENSQEFFKFFQKAVDLNP 307
Query: 613 RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTR-----AD 667
+ + +++F+ + A E+ K N Y + + + + A
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA-CLLYKQGKFTESEAF 366
Query: 668 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK-----------------A 710
P + A +L D + AI + A +
Sbjct: 367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426
Query: 711 DLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
L + A++ A +DP ++
Sbjct: 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 5e-12
Identities = 57/398 (14%), Positives = 110/398 (27%), Gaps = 46/398 (11%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDY-RMFEGR-VAASQLHMLVREHIDNWT-- 440
G K ++EA ++ + L P+ + L + I+ T
Sbjct: 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL-EKVIEFTTKA 85
Query: 441 ------IADCWLQL---YDRWSSVDD-IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 490
+ L+ + + D + LSV+ + D ++L +
Sbjct: 86 LEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKV 145
Query: 491 PEAAMRSL---------QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541
+ + E + +S+ + +++Q S
Sbjct: 146 LNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYS 205
Query: 542 F-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR----KGQALNNLGSVYVDC 596
+ +L A L S D + L + AL G +
Sbjct: 206 ATDEGYLVANDLLTKSTD---------MYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256
Query: 597 GQLDLAADCYSNALKIR-HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 655
L A ++ + ++ LA K N ++ K + Y R
Sbjct: 257 NNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR 316
Query: 656 SEYCDRELTR-----ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710
L D + L+P VYPY A +L K E+ A +
Sbjct: 317 G-QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375
Query: 711 DLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
L + A GD A++ A ++ ++
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 34/295 (11%), Positives = 72/295 (24%), Gaps = 48/295 (16%)
Query: 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 532
P Y +L L + + Q A + G + + +
Sbjct: 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333
Query: 533 EESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKC--------PSDRLRKG 583
+++ + + A L + ++ P+
Sbjct: 334 QKAQSLNPENVYPYIQLACLLYKQGK-----------FTESEAFFNETKLKFPTL----P 378
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
+ + D G D A Y A ++ + H G+ + +
Sbjct: 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQ 438
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
+ + + + + + +LDP A + + K +EAI
Sbjct: 439 LDEEK-----FNAAIKLLTKAC---------ELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484
Query: 702 LSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756
+ + F E + L DP +EL Y
Sbjct: 485 FEDSAILARTMDEKLQATTFAE--------AAKIQKRLRADPIISAKMELTLARY 531
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 34/251 (13%), Positives = 60/251 (23%), Gaps = 63/251 (25%)
Query: 569 LEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAH 618
+ PS R L N G+ + + A Y A+++ +
Sbjct: 3 HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFY 62
Query: 619 QGLARVHFLKNNKTTAYEEMTKLIK------KARNN-ASAYEKRSEY------------- 658
++ + + E TK ++ KA ASA E +
Sbjct: 63 SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLN 122
Query: 659 ----------------------CDRELTRADLEMVTQLDP--------LRVYPYRYRAAV 688
E D +Q+ P ++ +
Sbjct: 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182
Query: 689 LMDSHKENEAIAELSRAIAF---KADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPND 745
+ S + A A LS A+ D L + T L + N
Sbjct: 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA 242
Query: 746 QEMLELHSRVY 756
L +
Sbjct: 243 ALALCYTGIFH 253
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 29/287 (10%), Positives = 76/287 (26%), Gaps = 80/287 (27%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 444
++ G + + ++Y A+ F+ +L+P+
Sbjct: 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-------------------------VYP 346
Query: 445 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504
++QL L ++Q + +
Sbjct: 347 YIQL--------------------------ACLLYKQ-------GKFTESEAFFNETKLK 373
Query: 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSS 563
+ E + IL D + +++ + + +++ + + ++ + SS
Sbjct: 374 FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS 433
Query: 564 TVVSL-----LEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 610
+ A+K P QA L + + ++D A + + ++
Sbjct: 434 QDPTQLDEEKFNAAIKLLTKACELDPRSE----QAKIGLAQLKLQMEKIDEAIELFEDSA 489
Query: 611 KIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 655
+ Q K K + K + Y +
Sbjct: 490 ILARTMDEKLQATTFAEAAKIQK--RLRADPIISAKMELTLARYRAK 534
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 41/336 (12%), Positives = 84/336 (25%), Gaps = 74/336 (22%)
Query: 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQL 428
L LA G L+ +A+ L + + L P +
Sbjct: 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL------ 282
Query: 429 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM-LESDAPKGVLYFRQSLLLLR 487
A + +Q ++ + Y+ + +
Sbjct: 283 -------------ALTLADKENSQEFFKF-------FQKAVDLNPEYPPTYYHRGQMYFI 322
Query: 488 LNCPEAAM----RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF- 542
L + A ++ L ++ + +L +LY E E+ +
Sbjct: 323 LQDYKNAKEDFQKAQSLNPENVYP-YIQL---ACLLYKQGKFTESEAFFNETKLKFPTLP 378
Query: 543 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKC--------PSD------------RLRK 582
E A L D + A+K +
Sbjct: 379 EVPTFFAEILTDRGD-----------FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427
Query: 583 GQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTK 640
++ +D + + A + A ++ R +A GLA++ A E
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487
Query: 641 LIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDP 676
AR + + E + + + DP
Sbjct: 488 SAILARTMDEKLQATT---FAEAAKIQKRL--RADP 518
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 7e-15
Identities = 50/397 (12%), Positives = 113/397 (28%), Gaps = 26/397 (6%)
Query: 367 CFLERLLESAETDRQRLLAF-------HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMF 419
+++ + A +++L L V +Y A+ L +
Sbjct: 94 ALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSS--- 150
Query: 420 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF 479
A L + +W A L + + + + + + + + +
Sbjct: 151 ----ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEK--NANKLLMQDGGIKLEASMCY 204
Query: 480 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539
+ + L+ + A + A A +E T+ EE + +
Sbjct: 205 LRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTA-DEEWDLVLKLNYSTY 263
Query: 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQL 599
+A FL++ + ++ S ED L + + L +
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSHEDEL--RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF 321
Query: 600 DLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR-- 655
+ L+I + + K Y L+ + A +
Sbjct: 322 IDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381
Query: 656 --SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH 713
R + +DP + A + ++AI+ + A H
Sbjct: 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH 441
Query: 714 LLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEML 749
L +L H G++L A +++ ++ D +L
Sbjct: 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 6e-12
Identities = 49/424 (11%), Positives = 112/424 (26%), Gaps = 93/424 (21%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREH--------- 435
+ G V +D A+ ++ L + +E H+L +
Sbjct: 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDAKC--YEAFDQLVSNHLLTADEEWDLVLKLN 259
Query: 436 ------IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 489
D + ++ ++ S D++ + L ++ L +
Sbjct: 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319
Query: 490 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEE---------------------- 527
+ + + + L+++ +
Sbjct: 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAV 379
Query: 528 -----GLRKAEE-------SIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALK 574
+ K E S M F A+ A++ A + + A+
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE-----------HDQAIS 428
Query: 575 C--PSDRLRKG--QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLK 628
+ RL +G LG ++ G + LA + ++ + L V F K
Sbjct: 429 AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK 488
Query: 629 NNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAV 688
++ TA + + S + +
Sbjct: 489 SDMQTAINHFQNALLLVKKTQS-----------------------NEKPWAATWANLGHA 525
Query: 689 LMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
+ AI L++ + + +H A + H A+ +L++ PN+
Sbjct: 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585
Query: 748 MLEL 751
+L
Sbjct: 586 ASDL 589
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 45/361 (12%), Positives = 84/361 (23%), Gaps = 87/361 (24%)
Query: 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQL 428
E L S + +R + + + IL + P + L
Sbjct: 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN------LDVYPL 344
Query: 429 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 488
H+ + + +++ K V + + L +
Sbjct: 345 HLASLHESGEKNKL---YLISN---------------DLVDRHPEKAVTWLAVGIYYLCV 386
Query: 489 NCPEAAMRS----LQLARQHAASDHERLVYEGWILYDTSHCEEG-LRKAEES----IQMK 539
N A R + Q WI + S EG +A + ++
Sbjct: 387 NKISEARRYFSKSSTMDPQFG---------PAWIGFAHSFAIEGEHDQAISAYTTAARLF 437
Query: 540 -RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK--------CPSDRLRKGQALNNLG 590
+ + + A + D LN LG
Sbjct: 438 QGTHLPYLFLGMQHMQLGN-----------ILLANEYLQSSYALFQYD----PLLLNELG 482
Query: 591 SVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 650
V + + A + + NAL + N AY ++ A
Sbjct: 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW-ANLGHAYRKLKMY-DAA---ID 537
Query: 651 AYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710
A + L + A V + AI L ++A
Sbjct: 538 ALNQ----------------GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581
Query: 711 D 711
+
Sbjct: 582 N 582
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 569 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHF 626
L K S+ NLG Y D A D + L + H +A V+
Sbjct: 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL 561
Query: 627 LKNNKTTAYEEMTKLIKKARNNASAYEKRSE 657
K A + + + + N A +
Sbjct: 562 HKKIPGLAITHLHESLAISPNEIMASDLLKR 592
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 4e-14
Identities = 42/270 (15%), Positives = 87/270 (32%), Gaps = 48/270 (17%)
Query: 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALADSSQDSSCSS 563
+ +D E+ + G L + L + ++ ++ A++ +A +
Sbjct: 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK------ 75
Query: 564 TVVSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615
+ AL A G + + G+LD A D + LK
Sbjct: 76 -----SKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLK---- 122
Query: 616 RAHQGLARVHFLKNNKTTAYEEMTKLIK-----KARNNASAYEKRSEYCDRELTRADLEM 670
++ E ++LIK + R+ A +Y A L+
Sbjct: 123 -----------SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY---TAAIAFLDK 168
Query: 671 VTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH-LLHLRAAFHEHTGDVL 729
+ ++ RA + + +AI++L A K D + + + GD
Sbjct: 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228
Query: 730 GALRDCRAALSVDPNDQEMLELHSRVYSHE 759
+L + R L +D + + + +V
Sbjct: 229 LSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 4e-14
Identities = 60/398 (15%), Positives = 119/398 (29%), Gaps = 78/398 (19%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 444
+LG L + +A F A + PD + A
Sbjct: 28 KHLELGKKLLAAGQLADALSQFHAAVDGDPDN--------YIAYYRR----------ATV 69
Query: 445 WLQLYDRWSSVDDIGSLSVIYQM---LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 501
+L + +++ D L+ D ++ LLL+ + A +
Sbjct: 70 FLAMGKSKAALPD-------LTKVIQLKMDFTAA--RLQRGHLLLKQGKLDEAEDDFKKV 120
Query: 502 RQ---------------HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAF 545
+ + + +RL + + + + ++ +++ E
Sbjct: 121 LKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180
Query: 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADC 605
L+A + +S L+ A K +D +A + ++Y G +L+
Sbjct: 181 ELRAECFIKEGEPRK----AISDLKAASKLKNDNT---EAFYKISTLYYQLGDHELSLSE 233
Query: 606 YSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDREL 663
LK+ H R +V K + K +A + Y
Sbjct: 234 VRECLKLDQDHKRCFAHYKQV---------------KKLNKLIESAEELIRDGRY---TD 275
Query: 664 TRADLEMVTQLDP----LRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD-LHLLHLR 718
+ E V + +P V K EAI S + + D ++ L R
Sbjct: 276 ATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335
Query: 719 AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756
A + A++D A + NDQ++ E +
Sbjct: 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ 373
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 3e-12
Identities = 48/345 (13%), Positives = 105/345 (30%), Gaps = 32/345 (9%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 444
A Q G + L + + DEAE F+ +L +P + A + E + A
Sbjct: 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEK---EAQSQLIKSDEMQRLRSQALN 152
Query: 445 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504
+++ ++ + ++LE L ++ ++ P A+ L+ A +
Sbjct: 153 AFGS-GDYTAA-----IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206
Query: 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK---------RSFEAFFLKAYALADS 555
+ E + Y E L + E +++ K A+
Sbjct: 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266
Query: 556 SQDSSCSSTVVSLLEDALKC-PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR- 613
+ S E +K PS ++ + + + A S L++
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326
Query: 614 -HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYC--DRELTRADLEM 670
+ A + A + ++ A ++ + N+ E + ++ + D
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK 386
Query: 671 VTQLDPLRVYP-----YRYRAAVLMDSHKENEAIAELSRAIAFKA 710
+ + YR A + E + A K
Sbjct: 387 ILGVKRNAKKQEIIKAYRKLAL----QWHPDNFQNEEEKKKAEKK 427
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 12/149 (8%)
Query: 614 HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCD--RELTRADLEMV 671
H H +N Y + ++K + D + A
Sbjct: 2 HHHHHHSSGVDLGTENL----YFQSMADVEKHLELGKKLLAAGQLADALSQFHAA----- 52
Query: 672 TQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAF-HEHTGDVLG 730
DP Y RA V + K A+ +L++ I K D L+ G +
Sbjct: 53 VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112
Query: 731 ALRDCRAALSVDPNDQEMLELHSRVYSHE 759
A D + L +P++ E E S++ +
Sbjct: 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSD 141
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 40/259 (15%), Positives = 83/259 (32%), Gaps = 39/259 (15%)
Query: 516 GWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK 574
L+ ++ E + + K S + +A + ++ + A K
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK-----------YDLAQK 58
Query: 575 CPSDRLRK--------GQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARV 624
+ G + + GQ LA Y A+ + +
Sbjct: 59 D-IETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 625 HFLKNNKTTAYEEMTKLIKKARNNASAYEKR--SEYCDRELTRA--DLEMVTQLDPLRVY 680
+ K N A + M K I+ + + + + Y ++E +A V +L P
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177
Query: 681 PYRYRAAV---LMDSHKENEAIAELSRAI--------AFKADLHLLHL-RAAFHEHTGDV 728
Y +RA K+ A + I +K +L + A ++ D
Sbjct: 178 GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237
Query: 729 LGALRDCRAALSVDPNDQE 747
+ A + L++DP +++
Sbjct: 238 VKADAAWKNILALDPTNKK 256
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 16/173 (9%), Positives = 40/173 (23%), Gaps = 10/173 (5%)
Query: 585 ALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTA---YEEMT 639
A + ++ + A ++ A E
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 640 KLIKKARNNASAYEKR----SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 695
+ + ++ +E + L + D R+ Y + +
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF 124
Query: 696 NEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
AI + + I + + + + + A L + PN
Sbjct: 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-13
Identities = 36/249 (14%), Positives = 71/249 (28%), Gaps = 33/249 (13%)
Query: 516 GWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK 574
Y E R + + + + L + + L+ +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR-----------LDRSAH 54
Query: 575 C--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARV 624
P +A +NLG+VY + GQL A + Y +AL+++ + LA
Sbjct: 55 FSTLAIKQNPLL----AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA 110
Query: 625 HFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRV 679
+ A + ++ + + L R A + P
Sbjct: 111 LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL-KALGRLEEAKACYLKAIETQPNFA 169
Query: 680 YPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAA 738
+ V + AI +A+ + ++ + A+ A
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 739 LSVDPNDQE 747
LS+ PN
Sbjct: 230 LSLSPNHAV 238
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 4e-13
Identities = 54/379 (14%), Positives = 98/379 (25%), Gaps = 89/379 (23%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 444
L + + D + H + +P A+
Sbjct: 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-------------------------AEA 69
Query: 445 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504
+ L G +Y + L + A+ + A +
Sbjct: 70 YSNL--------------------------GNVYKERGQL-------QEAIEHYRHALRL 96
Query: 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALADSSQDSSCSS 563
+ + L E ++ ++Q + L +
Sbjct: 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR------ 150
Query: 564 TVVSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR-- 613
LE+A C P+ A +NLG V+ G++ LA + A+ +
Sbjct: 151 -----LEEAKACYLKAIETQPNF----AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201
Query: 614 HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR----SEYCDRELTRADLE 669
A+ L V A + + + N+A + E +L
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261
Query: 670 MVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDV 728
+L P Y A L + EA + A+ A G++
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321
Query: 729 LGALRDCRAALSVDPNDQE 747
A+R R AL V P
Sbjct: 322 EEAVRLYRKALEVFPEFAA 340
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 1e-12
Identities = 56/377 (14%), Positives = 101/377 (26%), Gaps = 89/377 (23%)
Query: 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 446
+L +++ AE + PD L
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDN-------------------------TGVLL 37
Query: 447 QLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 506
L ++F+ L + + LA +
Sbjct: 38 LL--------------------------SSIHFQCRRL-------DRSAHFSTLAIKQNP 64
Query: 507 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTV 565
E G + + +E + ++++K F + + A AL +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD-------- 116
Query: 566 VSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HT 615
+E A++ P ++LG++ G+L+ A CY A++ +
Sbjct: 117 ---MEGAVQAYVSALQYNPDL----YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA 169
Query: 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR----SEYCDRELTRADLEMV 671
A L V + A K + N AY E + A
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 672 TQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLG 730
L P + A V + + AI RAI + + A + G V
Sbjct: 230 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289
Query: 731 ALRDCRAALSVDPNDQE 747
A AL + P +
Sbjct: 290 AEDCYNTALRLCPTHAD 306
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 1e-11
Identities = 29/169 (17%), Positives = 49/169 (28%), Gaps = 7/169 (4%)
Query: 586 LNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIK 643
L G + A + +T L+ +HF + T IK
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 644 KARNNASAYEKR----SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAI 699
+ A AY E + +L P + Y AA L+ + A+
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 700 AELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
A+ + DL+ + + G + A A+ PN
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 33/167 (19%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
NL VY + G +DLA D Y A++++ A+ N A +E +
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY----------CNLANALKEKGSV 287
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
+A Y +L P A + + EA+
Sbjct: 288 -AEA---EDCYNT----------------ALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 702 LSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
+A+ + H A+ + G + AL + A+ + P +
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 47/282 (16%), Positives = 87/282 (30%), Gaps = 84/282 (29%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 444
A+ LGCV + E A H FE +TL P++ D
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-------------------------LDA 205
Query: 445 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504
++ L G + + + A+ + A
Sbjct: 206 YINL--------------------------GNVLKEARIF-------DRAVAAYLRALSL 232
Query: 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSS 563
+ + + Y+ + + +I+++ F +A+ A AL +
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS------ 286
Query: 564 TVVSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR-- 613
+ +A C P+ +LNNL ++ + G ++ A Y AL++
Sbjct: 287 -----VAEAEDCYNTALRLCPTH----ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337
Query: 614 HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 655
AH LA V + A + I+ + A AY
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 3e-13
Identities = 97/672 (14%), Positives = 186/672 (27%), Gaps = 189/672 (28%)
Query: 58 NYKPVDYVEVLAQ-IHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAW---QK 113
Y+ D + V + + +Q+ L + ++ + + +LR W K
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 114 ASTVHEKLVFGA------WL----KYEKQGEELIADLLINCDKCL----QEFGPIDIASH 159
+ +K V +L K E++ ++ + I L Q F +++
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 160 -----LQTDINVAGSHETVS---M--SGDQVLRNVVFRIHEEKIECDRQ------KFAAL 203
L+ + + V + SG + V K++C
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL--SYKVQCKMDFKIFWLNLKNC 192
Query: 204 SAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDF-SVTGSLNGVTPNLLLE----- 257
++P + + ++ L ID + + S I S+ L LL
Sbjct: 193 NSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR----RLLKSKPYEN 245
Query: 258 -ILIFANKFCCERLKDACDRKLAS--------LVASREDAVELMGYAIEENSPVLAVSCL 308
+L+ L + + K + L+ +R V + A +
Sbjct: 246 CLLV---------LLNVQNAKAWNAFNLSCKILLTTRFKQV---------TDFLSAATTT 287
Query: 309 QVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCF 368
+ L L + V + + L + +PR +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKY--------LDCRPQDL----PREVLTTNPRRLSII-- 333
Query: 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAIL-TLSP-DYR-MFEGRVAA 425
AE+ R L + D+ + E+ L L P +YR MF+
Sbjct: 334 -------AESIRDGLATWD-----NWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----- 376
Query: 426 SQLHMLVRE--HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL 483
+L + HI ++ W + V + + Y ++E + +
Sbjct: 377 -RLSVF-PPSAHIPTILLSLIWFDVIKS--DVMVVVNKLHKYSLVEKQPKESTISIPS-- 430
Query: 484 LLLRLNCPEAAMRSLQLARQHAASDHERLV--YEGWILYDTSHC----EEG--------- 528
+ L L +L H +V Y +D+ +
Sbjct: 431 IYLELKVKLENEYAL----------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 529 LRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNN 588
L+ E + F FL D LE ++ A N
Sbjct: 481 LKNIEHP-ERMTLFRMVFL----------D-------FRFLEQKIR------HDSTAWNA 516
Query: 589 LGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN 648
GS+ QL Y + + N+ YE + I
Sbjct: 517 SGSILNTLQQLKF----Y----------------KPYICDNDPK--YERLVNAILDFLPK 554
Query: 649 ASAYEKRSEYCD 660
S+Y D
Sbjct: 555 IEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 1e-10
Identities = 87/561 (15%), Positives = 179/561 (31%), Gaps = 143/561 (25%)
Query: 255 LLEILI--FANKFCCERLKDACDRKLASLVASRE-DAVELMGYAIEENSPVLAVSCLQVF 311
+L + F + F C+ ++D S+++ E D + I V
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDM----PKSILSKEEIDHI------IMSKDAVSGT------ 64
Query: 312 LRELPDCLND--ERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFL 369
L L E +V+ F + + + L+S + S T ++
Sbjct: 65 -LRLFWTLLSKQEEMVQKF----------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 370 ERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLH 429
E+ + D Q ++ V R + L +A+L L P V +
Sbjct: 114 EQR-DRLYNDNQVFAKYN----VS--RLQ--PYLKLRQALLELRP-----AKNVL---ID 156
Query: 430 -M-------LVREHIDNWTIADC------WLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 475
+ + + ++ + WL L + S + L + ++ +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 535
S + LR++ +A +R L ++ + L+ +L +
Sbjct: 217 S--DHSSNIKLRIHSIQAELRRLLKSKPYENC----LL----VLLN-------------- 252
Query: 536 IQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLL--EDALKCPSDRLRKGQALNNLGSVY 593
+Q +++ AF L L +++ + + + +L S L + + L Y
Sbjct: 253 VQNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-Y 310
Query: 594 VDCGQLDLAAD-CYSN--ALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 650
+DC DL + +N L I GLA N K +++T +I+ + N
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT---WDNWKHVNCDKLTTIIESSLNVLE 367
Query: 651 AYEKRSEYCD-------------------RELTRADLEMVTQ------LDPLRVYPYRYR 685
E R + ++ ++D+ +V L +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 686 A-AVLMDSHKENEAIAELSRAI---------AFKADLHLLHLRAAFHEHTGDVLGALRDC 735
++ ++ + E L R+I DL +L F+ H G L++
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH---HLKNI 484
Query: 736 RAALSVDPNDQEMLELHSRVY 756
E + L V+
Sbjct: 485 EHP--------ERMTLFRMVF 497
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 3e-07
Identities = 55/302 (18%), Positives = 95/302 (31%), Gaps = 94/302 (31%)
Query: 6 PSDSCKESQL----------NGFN-PQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPR 54
P + + +G +W V KL+ + IES + V EP
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI---------IESSLNVLEPA 369
Query: 55 IL-PNYK-----PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLR 108
+ P A I L L + + V KL + SL
Sbjct: 370 EYRKMFDRLSVFPPS-----AHIPTIL-LSLIWFDVIKSDVMVVV------NKLHKYSLV 417
Query: 109 KAWQKASTVHEKLVFGAWLKYEKQGEELIA--DLLINCDKCLQEF-------GPID---- 155
+ K ST+ + +L+ + + E A +++ + F +D
Sbjct: 418 EKQPKESTIS---IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 156 --IASHLQTDINVAGSHETVSMSGDQVLRNVV--FRIHEEKIECDRQKFAALSAPFSAML 211
I HL+ E +++ R V FR E+KI R A +A
Sbjct: 475 SHIGHHLKN----IEHPERMTL-----FRMVFLDFRFLEQKI---RHDSTAWNAS----- 517
Query: 212 NGSFMESLCEDIDLSENNISPSG------LRIISDFSVTGSLNGVTPNLLLEILIFANKF 265
GS + +L + + + I + + I DF L + NL+ +K+
Sbjct: 518 -GSILNTL-QQLKFYKPYICDNDPKYERLVNAILDF-----LPKIEENLIC------SKY 564
Query: 266 CC 267
Sbjct: 565 TD 566
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 7e-13
Identities = 35/396 (8%), Positives = 76/396 (19%), Gaps = 57/396 (14%)
Query: 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQL 428
L L ++ Q+++A + + + L+P+ V A
Sbjct: 92 LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ------VVAIAS 145
Query: 429 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 488
H ++ ++ L + Q + V L
Sbjct: 146 HDGGKQALETVQAL---LPVLC---------------QAHGLTPEQVVAIASNGGGKQAL 187
Query: 489 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFL 547
+ + L A + G + L ++ + + A
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 247
Query: 548 KAYALADSSQDSSCSSTVVSLLEDALKC--------PSDRLRKGQALNNLGSVYVDCGQL 599
++ L P A+ + +
Sbjct: 248 NGGGKQALET-----------VQRLLPVLCQAHGLTPQQ----VVAIASNSGGKQALETV 292
Query: 600 DLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE 657
A + A + + A
Sbjct: 293 QRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD- 351
Query: 658 YCDRELTR-----ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 712
+ L L L P +V + L +A +
Sbjct: 352 GGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ 411
Query: 713 HL-LHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
+ + + V L A + P
Sbjct: 412 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVV 447
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 45/385 (11%), Positives = 76/385 (19%), Gaps = 37/385 (9%)
Query: 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 446
HQ R L A L L L + A + + E + W A
Sbjct: 8 HQWSGARALEALLTVAGELRGPPLQLDTGQLL----KIAKRGGVTAVEAVHAWRNALTGA 63
Query: 447 QLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL---------------LLLRLNCP 491
L V I S Q LE + + Q+ L
Sbjct: 64 PLNLTPEQVVAIASHDGGKQALE-TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETV 122
Query: 492 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAY 550
+ + L A + + L ++ + A
Sbjct: 123 QRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGG 182
Query: 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 610
V LL + ++ A+ + G + A
Sbjct: 183 GKQALET-------VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH 235
Query: 611 KI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTR--- 665
+ + A + + A S + L
Sbjct: 236 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNS-GGKQALETVQR 294
Query: 666 --ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFH 722
L L P +V + L +A +
Sbjct: 295 LLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK 354
Query: 723 EHTGDVLGALRDCRAALSVDPNDQE 747
+ V L A + P
Sbjct: 355 QALETVQRLLPVLCQAHGLTPEQVV 379
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 17/171 (9%), Positives = 32/171 (18%), Gaps = 9/171 (5%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
A+ + G + A + A + +
Sbjct: 311 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQA 370
Query: 642 IKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696
A + L L L P +V
Sbjct: 371 HGLTPEQVVAIASNG-GGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ 429
Query: 697 EAIAELSRAIAFKADLHL-LHLRAAFHEHTGDVLGALRDCRAALSVDPNDQ 746
+ L +A + + ++ L AL+ ND
Sbjct: 430 RLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH 480
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 9e-04
Identities = 17/114 (14%), Positives = 27/114 (23%), Gaps = 6/114 (5%)
Query: 646 RNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRA 705
R +A E + LT A L L P +V + L +A
Sbjct: 44 RGGVTAVEAVHAW-RNALTGAPLN----LTPEQVVAIASHDGGKQALETVQRLLPVLCQA 98
Query: 706 IAFKADLHL-LHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSH 758
+ + + V L A + P + H
Sbjct: 99 HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA 152
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 69.8 bits (170), Expect = 2e-12
Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 7/172 (4%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
+LNNL ++ + G ++ A Y AL++ AH LA V + A +
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 69
Query: 642 IKKARNNASAYEKR----SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 697
I+ + A AY E D + Q++P + A++ DS E
Sbjct: 70 IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 129
Query: 698 AIAELSRAIAFKADLHLLHLRAAFH-EHTGDVLGALRDCRAALSVDPNDQEM 748
AIA A+ K D + A + D + +S+ + E
Sbjct: 130 AIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 3e-12
Identities = 57/408 (13%), Positives = 122/408 (29%), Gaps = 32/408 (7%)
Query: 357 NLDPRSDKTVCFLERLLESAE--TDRQRLLAFHQLGCVRLLRKEYDEA-EHLFEAILTLS 413
NL + F +++ E + + L ++ L+ + + A E L +A +
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
Query: 414 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 473
++ + + ++D D+ V + S + E D
Sbjct: 83 QEHADQAEIRSLVTWGNYAWVYYHMGRLSDV-QIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLA---RQHAASDHERLVYEGWILYDTSHCEEGLR 530
+G + L N E A + A + L + L + + +
Sbjct: 142 EGW-----TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAID 196
Query: 531 KAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALK-CPSDRLRKGQALNN 588
++I++ L A L ++ L+E+AL+ P L +
Sbjct: 197 PLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT----DVLRS 252
Query: 589 LGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN 648
Y + D A + AL+ A +L Y + R N
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNA--------YLHCQIGCCYRAKVFQVMNLREN 304
Query: 649 ASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708
+++ A L+ + + A++ + + EA + +
Sbjct: 305 GMYGKRKLLE-LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363
Query: 709 K---ADLHLLHLR-AAFHE-HTGDVLGALRDCRAALSVDPNDQEMLEL 751
+ LLHLR F A+ + ++ +E ++
Sbjct: 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM 411
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 33/359 (9%), Positives = 94/359 (26%), Gaps = 47/359 (13%)
Query: 373 LESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLV 432
+ES E D + + G + + A+ FE L P F +A +
Sbjct: 133 IESPELDCEEGWTRLKCG-----GNQNERAKVCFEKALEKKPKNPEFTSGLA------IA 181
Query: 433 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 492
+DNW + + + ++ + +L + +
Sbjct: 182 SYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLL------ALKLHKMREEGEEE---G 230
Query: 493 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYA 551
+ ++ A + A + L ++ + +++++ +
Sbjct: 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290
Query: 552 L--------ADSSQDSSCSSTVVSLLEDALKCPSDRLRKG----QALNNLGSVYVDCGQL 599
++ L+ A+ + + L S++ Q
Sbjct: 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350
Query: 600 DLAADCYSNALKI-----RHTRAHQGLARVH-FLKNNKTTAYEEMTKLIKKARNNASAYE 653
+ A + H + + A + +K + + +
Sbjct: 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK 410
Query: 654 KRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 712
+ + + +M + A + + K +A + R + + +
Sbjct: 411 MKDKL------QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 36/269 (13%), Positives = 71/269 (26%), Gaps = 47/269 (17%)
Query: 492 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAY 550
A+ + ++ D EG + E +I EA+
Sbjct: 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGI 107
Query: 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--------GQALNNLGSVYVDCGQLDLA 602
A++ + A+ L++ +AL L Y + A
Sbjct: 108 TQAENEN-----------EQAAIVA----LQRCLELQPNNLKALMALAVSYTNTSHQQDA 152
Query: 603 ADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCD 660
+ N +K ++ + L + + + + L A + + D
Sbjct: 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212
Query: 661 RELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-- 718
DL + S + N AI + A+ + + + L R
Sbjct: 213 -----PDL-------------QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLG 254
Query: 719 AAFHEHTGDVLGALRDCRAALSVDPNDQE 747
A A+ AL + P
Sbjct: 255 ATLANG-DRSEEAVEAYTRALEIQPGFIR 282
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 35/283 (12%), Positives = 75/283 (26%), Gaps = 65/283 (22%)
Query: 492 EAAMRSLQLARQ---HAASDHERLVYEGWI-LYDTSHCEEGLRKAEESIQMK-----RSF 542
E A +++ + ++ E + WI + + + +E+ + +
Sbjct: 6 ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDW 65
Query: 543 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKC--------PSDRLRKGQALNNLGSVYV 594
F + L + P D +A LG
Sbjct: 66 PGAFEEGLKRLKEGD-----------LPVTILFMEAAILQDPGD----AEAWQFLGITQA 110
Query: 595 DCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY 652
+ A L+++ + +A LA + +++ A E + IK+
Sbjct: 111 ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV 170
Query: 653 EKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 712
+++ + R + +DS A D
Sbjct: 171 ------KNKKGSPGLTR-------------RMSKS-PVDSSVLEGVKELYLEAAHQNGD- 209
Query: 713 HLLHLRAAFHEHTGDVLG-------ALRDCRAALSVDPNDQEM 748
+ G + A+ AAL+V P D +
Sbjct: 210 ---MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 34/148 (22%)
Query: 587 NNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKK 644
LG ++ G+ + A D ++ AL +R N + ++
Sbjct: 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLW----------NRLGATLANGDRS-EE 265
Query: 645 ARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSR 704
A AY + ++ P + ++ EA++
Sbjct: 266 A---VEAYTR----------------ALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306
Query: 705 AIAFKADLHLLH--LRAAFHEHTGDVLG 730
A++ + A + L
Sbjct: 307 ALSLQRKSRNQQQVPHPAISGNIWAALR 334
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 6e-11
Identities = 31/250 (12%), Positives = 67/250 (26%), Gaps = 41/250 (16%)
Query: 516 GWILYDTSHCEEGLRKA-EESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDAL 573
G H E R+ ++ +++++ A+ ++ A S+ + A+
Sbjct: 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE-----------HDQAM 145
Query: 574 KCPSD--RLRKG--QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFL 627
+L KG + +G Y LA +S AL I
Sbjct: 146 AAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM--------- 196
Query: 628 KNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAA 687
+ + + ++ ++ L +
Sbjct: 197 -HEVGVVAFQNGE-----------WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244
Query: 688 VLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQ 746
V K EA+ +A+ + H G+ A+ AL + +D
Sbjct: 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304
Query: 747 EMLELHSRVY 756
+ +
Sbjct: 305 FSVTMLGHCI 314
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 27/174 (15%), Positives = 49/174 (28%), Gaps = 8/174 (4%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKL 641
+ +L + + S ++ H N + KL
Sbjct: 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKL 82
Query: 642 IKKARNNASAYEKRSEY-----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696
+ +N ++ Y E R L T L+ + + +
Sbjct: 83 VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHD 142
Query: 697 EAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEML 749
+A+A A HL L + T + A R ALS+ P D ++
Sbjct: 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 46/371 (12%), Positives = 92/371 (24%), Gaps = 111/371 (29%)
Query: 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDY-----------R 417
++ L E+ + + ++ L ++ P +
Sbjct: 15 VDGLQENLDVVVSLAERHYYNC-------DFKMCYKLTSVVMEKDPFHASCLPVHIGTLV 67
Query: 418 MFEGRVAASQL-HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 476
L H LV + N W ++ Y M+
Sbjct: 68 ELNKANELFYLSHKLVDLYPSN---PVSWF-------------AVGCYYLMVGHKNEHAR 111
Query: 477 LYFRQSLLL---------------LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 521
Y ++ L + + AM + A Q H ++Y G
Sbjct: 112 RYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171
Query: 522 TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 581
T++ + AE FF +A ++ P D
Sbjct: 172 TNNSKL----AER----------FFSQALSI----------------------APEDPF- 194
Query: 582 KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGL-ARVHFLKNNKTTAYEEMTK 640
++ +G V G+ A + +AL+ ++ + L NN ++ K
Sbjct: 195 ---VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251
Query: 641 LIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700
+A + + L P Y + A+
Sbjct: 252 Y-AEA---LDYHRQ----------------ALVLIPQNASTYSAIGYIHSLMGNFENAVD 291
Query: 701 ELSRAIAFKAD 711
A+ + D
Sbjct: 292 YFHTALGLRRD 302
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 33/298 (11%), Positives = 76/298 (25%), Gaps = 88/298 (29%)
Query: 374 ESAETDRQRLLAFHQLGCV-RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLV 432
+ + +++ +GC ++ + + A TL Y
Sbjct: 81 KLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY---------------- 124
Query: 433 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL------- 485
W+ + + + + + + + + L
Sbjct: 125 ---------GPAWI-------------AYGHSFAVES-EHDQAMAAYFTAAQLMKGCHLP 161
Query: 486 --------LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537
N + A R A A D + G + + + + +
Sbjct: 162 MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ-------NGEWKTAE- 213
Query: 538 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG 597
+FL A + + + LNNLG V
Sbjct: 214 ------KWFLDALEKIKAIGNEVTVD-----------------KWEPLLNNLGHVCRKLK 250
Query: 598 QLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE 653
+ A D + AL + ++ + + +H L N A + + R++ +
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 6e-11
Identities = 40/199 (20%), Positives = 62/199 (31%), Gaps = 15/199 (7%)
Query: 570 EDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFL 627
++ LK R A LG Y+ G + A AL+I AH LA V
Sbjct: 24 QNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQT 83
Query: 628 KNNKTTAYEEMTKLIKKARNNASAY---------EKRSEYCDRELTRADLEMVTQLDPLR 678
+ A EE K + NA +KR E + L A L P R
Sbjct: 84 EMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA---SQDTLYPER 140
Query: 679 VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRA 737
+ V + K +A +++ + + L A + + A +
Sbjct: 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200
Query: 738 ALSVDPNDQEMLELHSRVY 756
+ L L R+
Sbjct: 201 FAQGGGQNARSLLLGIRLA 219
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 6e-08
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 569 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHF 626
L +A + R + NLG V + + A + + +L++ +A + +
Sbjct: 128 LLEASQDTLYPER-SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY 186
Query: 627 LKNNKTTAYEEMTKLIKKARNNASAY 652
+ A + + NA +
Sbjct: 187 KEREYVPARQYYDLFAQGGGQNARSL 212
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 38/268 (14%), Positives = 77/268 (28%), Gaps = 48/268 (17%)
Query: 496 RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALAD 554
+ Q ++ DH + EG + E ++Q + EA+ A+
Sbjct: 51 KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 110
Query: 555 SSQDSSCSSTVVSLLEDALKCPSDRLRK--------GQALNNLGSVYVDCGQLDLAADCY 606
+ Q A+ LR+ AL L + + A +
Sbjct: 111 NEQ-----------ELLAISA----LRRCLELKPDNQTALMALAVSFTNESLQRQACEIL 155
Query: 607 SNALKIRHTRAH-QGLARVHFLKNNKTTAYEEMTKLIKKARNN--ASAYEKRSEYCDREL 663
+ L+ AH A + + L+ + +
Sbjct: 156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA--------- 206
Query: 664 TRADLEMVTQLDPLRVYPYRY--RAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR--A 719
+LDP + P + S + ++A+ + A++ + + +LL + A
Sbjct: 207 -------AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA 259
Query: 720 AFHEHTGDVLGALRDCRAALSVDPNDQE 747
A+ R AL + P
Sbjct: 260 TLANG-NQSEEAVAAYRRALELQPGYIR 286
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 27/174 (15%), Positives = 48/174 (27%), Gaps = 28/174 (16%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
+A LG+ + Q LA L+++ + A LA ++ + A E +
Sbjct: 99 EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 158
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
++ A E + P + L+ E
Sbjct: 159 LRYTPAYAHLVTPAEE---------------GAGGAGLGPSKRILGSLLSDSLFLEVKEL 203
Query: 702 LSRAIAFKADLHLLHLRAAFHEHTGDVLGALRD-------CRAALSVDPNDQEM 748
A+ + G + + AALSV PND +
Sbjct: 204 FLAAVRLDPT----SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 32/130 (24%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
LG ++ G+ D A DC++ AL +R N +
Sbjct: 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW----------NKLGATLANGNQS 267
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
++A +AY + +L P + ++ EA+
Sbjct: 268 -EEA---VAAYRR----------------ALELQPGYIRSRYNLGISCINLGAHREAVEH 307
Query: 702 LSRAIAFKAD 711
A+ +
Sbjct: 308 FLEALNMQRK 317
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 28/166 (16%), Positives = 44/166 (26%), Gaps = 16/166 (9%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
A N G G+ LA D + L K ++ A E + +
Sbjct: 112 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE-QKLDEKQAKEVLKQH 170
Query: 642 IKKARNNASAYEKR-------SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK 694
+K+ + SE E +AD T L Y +
Sbjct: 171 FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 230
Query: 695 ENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALS 740
+ A A A+A H + L L + L+
Sbjct: 231 LDSATALFKLAVANNVHN------FVEHRYALLELSLLGQDQDDLA 270
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 30/166 (18%), Positives = 44/166 (26%), Gaps = 32/166 (19%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
Q L G +Y G LA + +S AL IR N +
Sbjct: 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF----------NYLGIYLTQAGNF 93
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
+AYE + V +LDP Y + R L ++ A +
Sbjct: 94 -------DAAYE-------------AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 133
Query: 702 LSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
L + L E D A + +Q
Sbjct: 134 LLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW 179
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 6e-10
Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 25/168 (14%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
+AL L + G ++ A + + + + + AY + +
Sbjct: 40 EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGY----------MVLSEAYVALYRQ 89
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
+ E+ +++P + R V + ++A A
Sbjct: 90 AEDRERGKGYLEQALSVLKDAE---------RVNPRYAPLHLQRGLVYALLGERDKAEAS 140
Query: 702 LSRAIAFK--ADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
L +A+A + ++ L + G + AL AL P D +
Sbjct: 141 LKQALALEDTPEIR-SALAELYLSM-GRLDEALAQYAKALEQAPKDLD 186
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 23/177 (12%), Positives = 48/177 (27%), Gaps = 49/177 (27%)
Query: 584 QALNNLGSVYVDC-----------GQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNN 630
L YV G L+ A +A ++ + H
Sbjct: 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH----------LQ 123
Query: 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYP--YRYRAAV 688
+ Y + + KA ++ ++ L+ P A +
Sbjct: 124 RGLVYALLGER-DKA---EASLKQ----------------ALALED---TPEIRSALAEL 160
Query: 689 LMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPN 744
+ + +EA+A+ ++A+ L + A+ G A R +
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 6e-10
Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 16/165 (9%)
Query: 153 PIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLN 212
+A L + + + + ++ + + AA S FSAM
Sbjct: 158 ECRLADELG------------GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 205
Query: 213 GSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKD 272
ES +++ N++ P + + F TG + ++L A+K+ ERLK
Sbjct: 206 HEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKMADDLLAAADKYALERLKV 262
Query: 273 ACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317
C+ L S + S E+A E++ A ++ L + D
Sbjct: 263 MCEDALCSNL-SVENAAEILILADLHSADQLKTQAVDFINYHATD 306
|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 7e-10
Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 4/144 (2%)
Query: 174 SMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPS 233
+ + + + ++ + + AA S FSAM ES +++ N++ P
Sbjct: 27 GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPE 84
Query: 234 GLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMG 293
+ + F TG + ++L A+K+ ERLK C+ L S + S E+A E++
Sbjct: 85 VFKEMMCFIYTGKAP-NLDKMADDLLAAADKYALERLKVMCEDALCSNL-SVENAAEILI 142
Query: 294 YAIEENSPVLAVSCLQVFLRELPD 317
A ++ L + D
Sbjct: 143 LADLHSADQLKTQAVDFINYHATD 166
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 22/168 (13%), Positives = 49/168 (29%), Gaps = 18/168 (10%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
+A +LG + + LA ++A + H LA H ++N A +
Sbjct: 56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 115
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
+ + + + ++ E
Sbjct: 116 LLSQPQYEQLGSVNLQ---------------ADVDIDDLNVQSEDFFFAAPNEYRECRTL 160
Query: 702 LSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEM 748
L A+ + LH + + + A + R A+ + P+D ++
Sbjct: 161 LHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 36/253 (14%), Positives = 69/253 (27%), Gaps = 44/253 (17%)
Query: 508 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVV 566
HE + EG + ++ E E Q EA+ A++ +
Sbjct: 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEK--------- 70
Query: 567 SLLEDALKCPSDRLRK--------GQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTR 616
A+ L L + + + A L + + +
Sbjct: 71 --DGLAIIA----LNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 124
Query: 617 AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDP 676
+ A ++ L ++ + A C L A +++P
Sbjct: 125 LG----------SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA-----LEMNP 169
Query: 677 LRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR--AAFHEHTGDVLGALRD 734
+ + S+ + A A L RA+ + D L + A AL
Sbjct: 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG-NRPQEALDA 228
Query: 735 CRAALSVDPNDQE 747
AL ++P
Sbjct: 229 YNRALDINPGYVR 241
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 42/364 (11%), Positives = 89/364 (24%), Gaps = 113/364 (31%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 444
+ G L EA FEA+ +P+ +
Sbjct: 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPER-------------------------EEA 57
Query: 445 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL---------------LLLRLN 489
W SL + E D ++ + +
Sbjct: 58 WR-------------SLGLTQAENEKD-GLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103
Query: 490 CPEAAMRSLQLA---------------RQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 534
AA+ SL+ + D + E + + E
Sbjct: 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163
Query: 535 SIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKC--------PSDRLRKGQA 585
+++M + + S+ + A P D Q
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNN-----------YDSAAANLRRAVELRPDD----AQL 208
Query: 586 LNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIK 643
N LG+ + + A D Y+ AL I + R +A + + A +++ + I
Sbjct: 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268
Query: 644 KARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 703
+ + S R + + + +L ++ + +
Sbjct: 269 MQVGGTTPTGEASREATRSM------------------WDFFRMLLNVMNRPDLVELTYA 310
Query: 704 RAIA 707
+ +
Sbjct: 311 QNVE 314
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 32/130 (24%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
Q +LG +Y D AA A+++R + N +
Sbjct: 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW----------NKLGATLANGNRP 222
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
++A AY + ++P V A + + + A +
Sbjct: 223 -QEA---LDAYNR----------------ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQ 262
Query: 702 LSRAIAFKAD 711
L RAI +
Sbjct: 263 LVRAIYMQVG 272
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-09
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 153 PIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLN 212
+A L + + + + ++ + + AA S FSAM
Sbjct: 9 ECRLADELG------------GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 56
Query: 213 GSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKD 272
ES +++ N++ P + + F TG + ++L A+K+ ERLK
Sbjct: 57 HEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP-NLDKMADDLLAAADKYALERLKV 113
Query: 273 ACDRKLAS 280
C+ L S
Sbjct: 114 MCEDALCS 121
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 4e-09
Identities = 25/165 (15%), Positives = 51/165 (30%), Gaps = 14/165 (8%)
Query: 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKK 644
+ S ++ GQ A + + + + +++ N + K
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL-----NIDRTEMYYWTN----VDKNSEISSKL 56
Query: 645 ARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSR 704
A A AY+K Y + + + Q P V A + + +E +A+ +
Sbjct: 57 ATELALAYKKNRNY---DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113
Query: 705 AIAFKADLH--LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
+ +AD + L ++ L LS Q
Sbjct: 114 ILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY 158
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 21/213 (9%), Positives = 56/213 (26%), Gaps = 49/213 (23%)
Query: 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSL 568
+ ++ + + + + ++I + E ++ + ++
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64
Query: 569 -----LEDALKC--------PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR-- 613
+ A P++ L + V GQ A Y L++
Sbjct: 65 KKNRNYDKAYLFYKELLQKAPNN----VDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120
Query: 614 HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQ 673
+ A+ L ++L + +K+ E ++L
Sbjct: 121 NLAANIFLGNYYYLTAEQ--------------------EKKKLETDYKKL---------S 151
Query: 674 LDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 706
Y + + + +A L + I
Sbjct: 152 SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 1e-08
Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 35/170 (20%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
+LG YV G +D + +L + + Y ++ K
Sbjct: 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA----------TVLGLTYVQVQKY 92
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
A K V + +P+ L + + +EAI
Sbjct: 93 -DLA---VPLLIK----------------VAEANPINFNVRFRLGVALDNLGRFDEAIDS 132
Query: 702 LSRAIAFKADLHLLH--LRAAFHEHTGDVLGALRDCRAALSVDPNDQEML 749
A+ + + +H + ++ + G AL + A +D L
Sbjct: 133 FKIALGLRPNEGKVHRAIAFSYEQM-GRHEEALPHFKKANELDEGASVEL 181
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 20/167 (11%), Positives = 43/167 (25%), Gaps = 33/167 (19%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
A G+VYV A D + AL+ + T ++ +
Sbjct: 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF----------YMLGTVLVKLEQP 141
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
K A ++ +L+ L + +EA+++
Sbjct: 142 -KLA---LPYLQR----------------AVELNENDTEARFQFGMCLANEGMLDEALSQ 181
Query: 702 LSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
+ + + + AL A+ + P+
Sbjct: 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 2e-08
Identities = 16/174 (9%), Positives = 33/174 (18%), Gaps = 9/174 (5%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
A+ + + A + A + +
Sbjct: 227 VAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQA 286
Query: 642 IKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696
+ A + L L L P +V
Sbjct: 287 HGLTPDQVVAIASHGG-GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQ 345
Query: 697 EAIAELSRAIAFKADLHL-LHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEML 749
+ L +A D + + + V L A + P+ +
Sbjct: 346 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 399
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 6e-08
Identities = 16/171 (9%), Positives = 31/171 (18%), Gaps = 8/171 (4%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
A+ + + A + A + +
Sbjct: 261 VAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQA 320
Query: 642 IKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696
+ A + L L L P +V
Sbjct: 321 HGLTPDQVVAIASHDG-GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 379
Query: 697 EAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
+ L +A D + + V L A + P+
Sbjct: 380 RLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVV 430
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 39/410 (9%), Positives = 78/410 (19%), Gaps = 58/410 (14%)
Query: 369 LERLLESAETDRQR--------LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFE 420
LE LL A R L+ + G V + + L A L L+P
Sbjct: 136 LEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQ---- 191
Query: 421 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 480
V A + ++ ++ L + Q + V
Sbjct: 192 --VVAIASNNGGKQALETVQRL---LPVLC---------------QAHGLTPAQVVAIAS 231
Query: 481 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540
L + + L A + + L ++ +
Sbjct: 232 HDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 291
Query: 541 SF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR----KGQALNNLGSVYVD 595
A ++ L + A+ +
Sbjct: 292 DQVVAIASHGGGKQALET-----------VQRLLPVLCQAHGLTPDQVVAIASHDGGKQA 340
Query: 596 CGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE 653
+ A + A + + + A
Sbjct: 341 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 400
Query: 654 KRSEYCDRELTR-----ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708
+ L L L P +V + L +
Sbjct: 401 SNGGK--QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGL 458
Query: 709 KADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 757
+ + V L A + P+ + +
Sbjct: 459 TPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQ 508
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 8e-07
Identities = 14/172 (8%), Positives = 28/172 (16%), Gaps = 9/172 (5%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
A+ + + + A + +
Sbjct: 430 VAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQA 489
Query: 642 IKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696
+ A + L L L P +V
Sbjct: 490 HGLTPDQVVAIASNIG-GKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 548
Query: 697 EAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
+ L +A D + + V L A +
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV 600
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 14/172 (8%), Positives = 30/172 (17%), Gaps = 9/172 (5%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
A+ + + A + A + +
Sbjct: 498 VAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 557
Query: 642 IKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696
+ A + L L L ++V
Sbjct: 558 HGLTPDQVVAIASNG-GGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQ 616
Query: 697 EAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
+ L +A + + V L A + P+
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 668
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 15/172 (8%), Positives = 30/172 (17%), Gaps = 9/172 (5%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKL 641
A+ + + A + A + +
Sbjct: 600 VAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQA 659
Query: 642 IKKARNNASAYEKRSEYCDRELTR-----ADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696
+ A + L L L +V
Sbjct: 660 HGLTPDQVVAIASN-GGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQ 718
Query: 697 EAIAELSRAIAFKADLHL-LHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
+ L +A D + + + V L A + P
Sbjct: 719 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVV 770
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 49/335 (14%), Positives = 103/335 (30%), Gaps = 79/335 (23%)
Query: 363 DKTVCFLERLLESAETDRQRL-LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEG 421
V F + +++ D + L + QLG +Y++A + LTL +
Sbjct: 65 RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL---AKSMND 121
Query: 422 R--VAASQLHM-LVREHIDNWTIADCWLQ--------LYDRWSSVDDIGSLSVIYQMLES 470
R A S ++ + + + A + L DR S + +L +Y
Sbjct: 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK-G 180
Query: 471 DAPKGVLYFRQSLLLLRLNCPEAAM----RSLQLARQHAASDHERLVYE--GWILYDTSH 524
+ + A+ +L+L R + G Y
Sbjct: 181 KHLGQRNPGKFGDDVK--EALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD 238
Query: 525 CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 584
+ + +E +++ R F DR + +
Sbjct: 239 FQAAIEHHQERLRIAREFG----------------------------------DRAAERR 264
Query: 585 ALNNLGSVYVDCGQLDLAADCYSNALKIR--------HTRAHQGLARVHFLKNNKTTA-- 634
A +NLG+ ++ GQ + AA+ Y L + ++ L + L + TA
Sbjct: 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIE 324
Query: 635 -YE---EMTKLIK------KARNN-ASAYEKRSEY 658
+ + + + +A + +A+ +
Sbjct: 325 YHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGH 359
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 38/218 (17%), Positives = 64/218 (29%), Gaps = 33/218 (15%)
Query: 457 DIGSLSVIYQMLES----DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 512
+ SLS + + S G + S + L
Sbjct: 5 SMSSLSASAENVSSLGLGSGGGGTNSHDGNS----------QQGSGSDGGSSMCLE---L 51
Query: 513 VYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY-ALADSSQDSSCSSTVVSLLED 571
EG L + C G+ + +IQ Y L ++ + + +
Sbjct: 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111
Query: 572 AL---KCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--------HTRAHQG 620
L K +DRL + ++ NLG+ G+ D AA C L + RA
Sbjct: 112 DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYN 171
Query: 621 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY 658
L V+ K + K + A + E+
Sbjct: 172 LGNVYHAKGK----HLGQRNPGKFGDDVKEALTRAVEF 205
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 24/177 (13%), Positives = 43/177 (24%), Gaps = 16/177 (9%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKL 641
L Y+ A +ALK ++ A A ++ A E +
Sbjct: 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQA 68
Query: 642 IKKARNNASAY----------EKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 691
+ ++A R +A + P +
Sbjct: 69 LSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA---LADPTYPTPYIANLNKGICSAK 125
Query: 692 SHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
+ A A L R++A + A G + A + S Q
Sbjct: 126 QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKL 641
A N G GQ LA +L + A + LAR L A K
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173
Query: 642 IKKARNNASAY 652
+ +
Sbjct: 174 QSRVEVLQADD 184
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 22/149 (14%), Positives = 37/149 (24%), Gaps = 37/149 (24%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKL 641
A L + G L + H A L RV + + + E L
Sbjct: 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR----HAEAAVL 79
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
+++A P + L D+ + A A
Sbjct: 80 LQQAS--------------------------DAAPEHPGIALWLGHALEDAGQAEAAAAA 113
Query: 702 LSRAIAFKADL-----HLLHLRAAFHEHT 725
+RA + LL+ R +
Sbjct: 114 YTRAHQLLPEEPYITAQLLNWRRRLCDWR 142
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 22/165 (13%), Positives = 39/165 (23%), Gaps = 12/165 (7%)
Query: 491 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 549
+ L+ A +H D + G + + + EA
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64
Query: 550 YALADSSQDSSCSSTVVSLLEDALKC-PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSN 608
+ + LL+ A P LG D GQ + AA Y+
Sbjct: 65 RVRWTQQRHAEA----AVLLQQASDAAPEHP----GIALWLGHALEDAGQAEAAAAAYTR 116
Query: 609 ALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASA 651
A ++ L + ++ A
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 48.9 bits (118), Expect = 3e-07
Identities = 34/165 (20%), Positives = 53/165 (32%), Gaps = 35/165 (21%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
+A NLG+ Y G D A + Y AL++ A N AY +
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW----------YNLGNAYYKQGDY 51
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
+A Y+K +LDP + +EAI
Sbjct: 52 -DEAIE---YYQK----------------ALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 91
Query: 702 LSRAIAFKADLHLLH--LRAAFHEHTGDVLGALRDCRAALSVDPN 744
+A+ L A+++ GD A+ + AL +DP
Sbjct: 92 YQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPR 135
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 5e-07
Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 26/169 (15%)
Query: 595 DCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY 652
D L+ A++ ++ T A A V +++++ E+
Sbjct: 211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEK--------------- 255
Query: 653 EKRSEYCDRELTRADLEMVTQLDPLRVYP--YRYRAAVLMDSHKENEAIAELSRAIAFKA 710
+++ + L L Y+ +A + K +E+ ++ I +
Sbjct: 256 -------QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308
Query: 711 DLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHE 759
L +E G A A ++ P + + + ++
Sbjct: 309 SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTS 357
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 9e-07
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 174 SMSGDQVLRNVVFRI----HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENN 229
SM ++++ +V F + + + A S+ F AM G E +I + +
Sbjct: 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPD-- 57
Query: 230 ISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLAS 280
+ P+ I+ + + ++ + + +L L A K+ L AC L +
Sbjct: 58 VEPAAFLILLKYMYSDEID-LEADTVLATLYAAKKYIVPALAKACVNFLET 107
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 52/331 (15%), Positives = 101/331 (30%), Gaps = 68/331 (20%)
Query: 363 DKTVCFLERLLESAETDRQRL-LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEG 421
V F E ++ D + L + QLG +Y +A LTL+
Sbjct: 22 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-------- 73
Query: 422 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 481
R D A G+L ++L + + ++ ++
Sbjct: 74 -----------RTIGDQLGEAKAS-------------GNLGNTLKVL-GNFDEAIVCCQR 108
Query: 482 SLLLLRL--NCPEAAMRSLQLAR-QHAASDHERLVYEGWILYDTSHCEEGLRKA----EE 534
L + R + A L HA L+ A EE
Sbjct: 109 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168
Query: 535 SIQMKRSFEAFFLKAYA---LADSSQDSSCSSTVVSLLEDAL---KCPSDRLRKGQALNN 588
++ + + + A L ++ V E L K D+ + +A +N
Sbjct: 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228
Query: 589 LGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTA---YE- 636
LG+ Y+ G+ + A++ Y L + ++ L + L + A +
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288
Query: 637 --EMTKLIK------KARNN-ASAYEKRSEY 658
+ + +K +A + +AY +
Sbjct: 289 HLAIAQELKDRIGEGRACWSLGNAYTALGNH 319
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 17/166 (10%)
Query: 512 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA-LADSSQDSSCSSTVVSLLE 570
L EG L + C G+ E ++Q+ Y+ L ++ + +
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67
Query: 571 DALKCP---SDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-RHTRAHQGLARVHF 626
L D+L + +A NLG+ G D A C L I R G AR
Sbjct: 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL- 126
Query: 627 LKNN---------KTTAYEEMTKLIKKARNNASAYEKRSEYCDREL 663
N K+ + + +A + + + L
Sbjct: 127 --YNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 46.2 bits (111), Expect = 2e-06
Identities = 25/130 (19%), Positives = 40/130 (30%), Gaps = 32/130 (24%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
+A NLG+ Y G D A + Y AL++ + A N AY +
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW----------YNLGNAYYKQGDY 59
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
+A Y+K +LDP + +EAI
Sbjct: 60 -DEA---IEYYQK----------------ALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 99
Query: 702 LSRAIAFKAD 711
+A+ +
Sbjct: 100 YQKALELDPN 109
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 15/140 (10%), Positives = 43/140 (30%), Gaps = 18/140 (12%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKL 641
+ N+G +Y + A ++ ++ A+ +++ A +++ +
Sbjct: 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA 97
Query: 642 IKKAR-NNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700
+ + R N Y+ A + + +A
Sbjct: 98 LIQLRGNQLIDYKILGLQFKLFACEV---------------LYNIAFMYAKKEEWKKAEE 142
Query: 701 ELSRAIAFKADLHLLHLRAA 720
+L+ A + K++ + A
Sbjct: 143 QLALATSMKSEPRHSKIDKA 162
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 24/167 (14%)
Query: 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKK 644
+L N G + D A D + +A++ H+R + ++ + N T A + T+ I +
Sbjct: 8 SLWNEGVLAADKKDWKGALDAF-SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR 66
Query: 645 ARNNASAYEKR--SEYCDRELTRA--DLEMV-TQLDPLRVYPYRYRAAVLMDSHKENEAI 699
++ A AY +R Y + A DL+ QL ++ Y+ K
Sbjct: 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL----QFKLFACE 122
Query: 700 AELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQ 746
+ A + + A A S+ +
Sbjct: 123 VLYNIAFM--------------YAKKEEWKKAEEQLALATSMKSEPR 155
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 51/331 (15%), Positives = 102/331 (30%), Gaps = 68/331 (20%)
Query: 363 DKTVCFLERLLESAETDRQRL-LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEG 421
V F E ++ D + L + QLG +Y +A LTL+
Sbjct: 26 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-------- 77
Query: 422 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 481
R D A G+L ++L + + ++ ++
Sbjct: 78 -----------RTIGDQLGEAKAS-------------GNLGNTLKVL-GNFDEAIVCCQR 112
Query: 482 SLLLLRL--NCPEAAMRSLQLAR-QHAASDHERLVYEGWILYDTSHCEEGLRKA----EE 534
L + R + A L HA + + L+ A EE
Sbjct: 113 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172
Query: 535 SIQMKRSFEAFFLKAYA---LADSSQDSSCSSTVVSLLEDAL---KCPSDRLRKGQALNN 588
++ + + + A L ++ V E L K D+ + +A +N
Sbjct: 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 232
Query: 589 LGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTA---YE- 636
LG+ Y+ G+ + A++ Y L + ++ L + L + A +
Sbjct: 233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292
Query: 637 --EMTKLIK------KARNN-ASAYEKRSEY 658
+ + + +A + +AY +
Sbjct: 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNH 323
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 27/119 (22%), Positives = 40/119 (33%), Gaps = 5/119 (4%)
Query: 512 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY-ALADSSQDSSCSSTVVSLLE 570
L EG L + C G+ E ++Q+ Y L ++ + +
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 571 DALKCP---SDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-RHTRAHQGLARVH 625
L D+L + +A NLG+ G D A C L I R G AR
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 130
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 7e-06
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 566 VSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLAR 623
E + +R +A +LG + + LA ++A + + H LA
Sbjct: 37 ALAFEAVCQKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 93
Query: 624 VHFLKNNKTTAYEEMTKLIK 643
H ++N A + +
Sbjct: 94 SHTNEHNANAALASLRAWLL 113
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 10/107 (9%)
Query: 508 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVV 566
HE + EG + ++ E E Q + EA+ A++ +D +
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLA----I 71
Query: 567 SLLEDALKC-PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 612
L A P D L + + + A L
Sbjct: 72 IALNHARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWLLS 114
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 49/238 (20%), Positives = 89/238 (37%), Gaps = 45/238 (18%)
Query: 526 EEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 584
E+ L++ EE + + +A LK AL + S + LL A+K + + +
Sbjct: 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEA---EVLLSKAVKLEPELV---E 138
Query: 585 ALNNLGSVYVDCGQLDLAADCYSNALKI-RHTRAHQGLARVHFLKNNKTTAYEEMTKLIK 643
A N LG VY G + A C+S AL ++ + Q L+ V L+ +T + +E ++ +
Sbjct: 139 AWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMV--LRQLQTDSGDEHSRHVM 196
Query: 644 KARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSH--------KE 695
+ + Q+D L + + +
Sbjct: 197 DS---VRQAKL----------------AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237
Query: 696 NEAIAELSRAIAFK------ADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
+A++ ++A DLH RA H++ AL A ++DP E
Sbjct: 238 QQALSAYAQAEKVDRKASSNPDLH--LNRATLHKYEESYGEALEGFSQAAALDPAWPE 293
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 5e-04
Identities = 33/290 (11%), Positives = 67/290 (23%), Gaps = 89/290 (30%)
Query: 369 LERLLESAETDRQRLL--------AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFE 420
AE + + A++QLG V + + A F LT +
Sbjct: 115 TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK---- 170
Query: 421 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 480
V+ L M++R+ +
Sbjct: 171 --VSLQNLSMVLRQL--------------------------------------------Q 184
Query: 481 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540
++R +LA Q D W + ++ + ++
Sbjct: 185 TDSGDEHSRHVMDSVRQAKLAVQMDVLD-----GRSWYILGNAYLSLYFNTGQNPKISQQ 239
Query: 541 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLD 600
+ A+ A K N +++
Sbjct: 240 ALSAY------------------------AQAEKVDRKASSNPDLHLNRATLHKYEESYG 275
Query: 601 LAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN 648
A + +S A + Q ++ + T+ E K K +
Sbjct: 276 EALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQS 325
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 578 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--------HTRAHQGLARVHFLKN 629
G+ L N+G Q + A + A+ + +A+ + ++H+
Sbjct: 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG 278
Query: 630 NKTTAYEEMTKLIKKA 645
++ + K
Sbjct: 279 K----IDKAHEYHSKG 290
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 2e-05
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 578 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-RHTRAHQGLARVHFLKNNKTTAYE 636
DR + Q+ +LG+ Y + A D + L I + + G R + AY
Sbjct: 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC---WSLGNAYT 140
Query: 637 EM 638
+
Sbjct: 141 AL 142
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-05
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 14/89 (15%)
Query: 578 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--------HTRAHQGLARVHFLKN 629
R +G+A NLG+ + G A + L I A+ L +
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG 63
Query: 630 NKTTA---YE---EMTKLIKKARNNASAY 652
TA Y+ + + +K A +
Sbjct: 64 EFETASEYYKKTLLLARQLKDRAVEAQSC 92
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 578 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613
DR+ +G+A +LG+ Y G D A L+I
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-05
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 566 VSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLAR 623
V E A+ + LGS + G+ A +N +K H A
Sbjct: 10 VPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69
Query: 624 VHFLKNNKTTAYEEMTKLIKKARNNAS--AYEK 654
V + E + K+I + ++ + +Y++
Sbjct: 70 VLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 1/92 (1%)
Query: 665 RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAF-HE 723
+ + + LD + A +A+ S + AA H
Sbjct: 38 QKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97
Query: 724 HTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755
GD+ GA +A ++ L +R
Sbjct: 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 8/61 (13%)
Query: 578 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKN 629
D++ A LG + L A + A I L + +
Sbjct: 142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHH 201
Query: 630 N 630
+
Sbjct: 202 H 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 9e-05
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Query: 578 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKN 629
D L + +V + G L A Y +L A +GL + +
Sbjct: 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161
Query: 630 NKTTAYE 636
N A +
Sbjct: 162 NLLEAQQ 168
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 578 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH---------TRAHQGLARVHFLK 628
D + +AL+ +G V G D A C+ ++ + +A V
Sbjct: 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120
Query: 629 NNKTTAYE 636
+ A +
Sbjct: 121 GDLAGARQ 128
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 9e-05
Identities = 25/193 (12%), Positives = 56/193 (29%), Gaps = 24/193 (12%)
Query: 569 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQG 620
L+ P +R Q+L + Y D D A AL++ +
Sbjct: 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN 227
Query: 621 LARVHFLKNNKTTA---YEEMTKLIKKAR---------NNASAYEKRSEYCD-RELTRAD 667
+A + + A +++ K+ ++ + K + +
Sbjct: 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287
Query: 668 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGD 727
L+ +T Y+ L +KE ++ +++ +L A
Sbjct: 288 LDHITARS---HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344
Query: 728 VLGALRDCRAALS 740
V + A +
Sbjct: 345 VFESSCHFEQAAA 357
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 27/252 (10%), Positives = 79/252 (31%), Gaps = 21/252 (8%)
Query: 370 ERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLH 429
E+ L D ++ ++ K+ + + L + ++ ++ R S
Sbjct: 128 EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187
Query: 430 M-LVREHIDNWTIA-DCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 487
+ + ++ A + + + +++ + Y R +
Sbjct: 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI------ANSYDRSGDDQMA 241
Query: 488 LNCPEAAMRSLQLARQHAASDHERLVYE-GWILYDTSHCEEGLRKAEESIQMKR-----S 541
+ + ++ +++R+ ++++ W L ++ + EE +
Sbjct: 242 VEHFQ---KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298
Query: 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDL 601
++ FL A+ + D ++S E + +V+ +
Sbjct: 299 YKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAY----IEACARSAAAVFESSCHFEQ 354
Query: 602 AADCYSNALKIR 613
AA Y LK +
Sbjct: 355 AAAFYRKVLKAQ 366
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 1e-04
Identities = 13/132 (9%), Positives = 32/132 (24%), Gaps = 30/132 (22%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
+ G + D G + D + A+++ ++ K A + +
Sbjct: 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYW----------LMKGKALYNLER- 55
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
YE+ + + + D + +A L +
Sbjct: 56 ----------YEEAVDCYNYVIN-------VIEDEYNKDVWAAKADALRYIEGKEVEAEI 98
Query: 702 LSRAIAFKADLH 713
+ H
Sbjct: 99 AEARAKLEHHHH 110
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 1e-04
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 16/73 (21%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKL 641
+A NLG+ Y G D A + Y AL++ + A N AY +
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW----------YNLGNAYYKQGDY 59
Query: 642 IKKARNNASAYEK 654
+A Y+K
Sbjct: 60 -DEA---IEYYQK 68
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 2e-04
Identities = 7/70 (10%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Query: 585 ALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLI 642
L ++ A + ++ + + L +++ + A + + I
Sbjct: 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68
Query: 643 KKARNNASAY 652
+ AR +
Sbjct: 69 EVAREEGTQK 78
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 670 MVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDV 728
+ ++ D + M A+ +AI + RAA + G+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 729 LGALRDCRAALSVDPN 744
GA++DC A+ +DP
Sbjct: 63 AGAVQDCERAICIDPA 78
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 673 QLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGA 731
+L+P + RAA A+ + RAI + R + A
Sbjct: 40 ELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEA 99
Query: 732 LRDCRAALSVDPNDQEMLE 750
+ + AL +DP+++
Sbjct: 100 VAYYKKALELDPDNETYKS 118
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 689 LMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
+A +AI + +AA + ++ C A+ V +
Sbjct: 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77
Query: 748 MLELHSRVYS 757
+L ++ S
Sbjct: 78 DYKLIAKAMS 87
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 4e-04
Identities = 42/330 (12%), Positives = 102/330 (30%), Gaps = 72/330 (21%)
Query: 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 444
+ V + + A L + L+
Sbjct: 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAAN-------------------------YTV 133
Query: 445 WLQLYDRWSSVDDIGS-----LSVIYQMLESDAPK--GVLYFRQSLLLLRLNCPEAAMRS 497
W + R + + ++ I ++E PK V + R+ +L+ L P +
Sbjct: 134 W---HFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR-VLVEWLRDPSQELEF 188
Query: 498 LQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALADSS 556
+ A ++ + W++ + + L+ ++ ++ R+ + + + +++++
Sbjct: 189 IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248
Query: 557 QDSSCSSTVVSLLEDALKCPSDRLRKG----QALNNLGSVYVDCGQLDLAADCYSNALKI 612
+ + +LE ++ + ++ A N L + D G L + + L +
Sbjct: 249 GYNDRA-----VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 302
Query: 613 ----RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADL 668
L + YE+M + + N K E C+
Sbjct: 303 QPSHSSPYLIAFLVDI----------YEDMLE--NQCDNKEDILNKALELCEI------- 343
Query: 669 EMVTQLDPLRVYPYRYRAAVLMDSHKENEA 698
+ + D +R +RY L H
Sbjct: 344 -LAKEKDTIRKEYWRYIGRSLQSKHSTEND 372
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 15/109 (13%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 652 YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF--- 708
Y++ ++ D ++ + + + A + +AI S+ +
Sbjct: 61 YKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120
Query: 709 --KADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755
KA L+ + + G + A + A S++PN+ ++ +
Sbjct: 121 NVKA----LYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 682 YRYRAAVLMDSHKENEAIAELSRAIAF-----KADLHLLHLRAAFHEHTGDVLGALRDCR 736
+R RAA + ++A E S+AI KA L+ R+ E G + A+ D +
Sbjct: 68 HRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA----LYRRSQALEKLGRLDQAVLDLQ 123
Query: 737 AALSVDPNDQEMLELHSRV 755
+S++P ++ E +
Sbjct: 124 RCVSLEPKNKVFQEALRNI 142
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 6e-04
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 9/112 (8%)
Query: 169 SHETVSMSGDQVLRN------VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCED 222
H + +SG R VV + + R AA S F + +
Sbjct: 7 DHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNV 66
Query: 223 IDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDAC 274
++ +S L + DF+ T +L V+ + +IL A + C
Sbjct: 67 YEIDF--VSAEALTALMDFAYTATLT-VSTANVGDILSAARLLEIPAVSHVC 115
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 6e-04
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV 243
VV + E+ + A S F ++ +L E I+P G I+ DF
Sbjct: 32 VVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPE--INPEGFNILLDFMY 89
Query: 244 TGSLNGVTPNLLLEILIFAN--------KFCCERLKDA 273
T LN + ++ ++ A C + +K +
Sbjct: 90 TSRLN-LREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 6e-04
Identities = 18/155 (11%), Positives = 40/155 (25%), Gaps = 35/155 (22%)
Query: 569 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHF 626
L+D P D + + + + + G+++ A + + GLA ++
Sbjct: 25 LKDINAIPDDMM---DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ 81
Query: 627 LKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRA 686
+K +++ L A L P +
Sbjct: 82 IKEQ----FQQAADLYAVA--------------------------FALGKNDYTPVFHTG 111
Query: 687 AVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAF 721
+ +A I D L ++
Sbjct: 112 QCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSY 146
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 34/176 (19%)
Query: 594 VDCGQLDLAADC--------------YSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMT 639
+CG+L D + + + L LKN T +
Sbjct: 179 AECGELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFF---- 234
Query: 640 KLIKKARNNASA---YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696
K++N A Y K Y + A+ +L P+ + A +
Sbjct: 235 ----KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQ 290
Query: 697 EAIAELSRAIAF-----KADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
A+ A+ KA L+ RA + + AL D + A + P D+
Sbjct: 291 GAVDSCLEALEIDPSNTKA----LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 760 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.96 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.94 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.93 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.93 | |
| 3hve_A | 256 | Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis | 99.93 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.93 | |
| 3htm_A | 172 | Speckle-type POZ protein; BTB, SPOP, ubiquitin, li | 99.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.92 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 3i3n_A | 279 | Kelch-like protein 11; structural genomics, BTB, K | 99.92 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.91 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.91 | |
| 2vkp_A | 109 | BTB/POZ domain-containing protein 6; protein-bindi | 99.9 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.9 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.9 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.9 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.9 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.9 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.9 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.9 | |
| 4eoz_A | 145 | Speckle-type POZ protein; E3 ubiquitin ligase, nuc | 99.89 | |
| 2if5_A | 120 | Zinc finger and BTB domain-containing protein 7A; | 99.89 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.89 | |
| 3hqi_A | 312 | Speckle-type POZ protein; SPOP, ubiquitin, puckere | 99.89 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.89 | |
| 1r29_A | 127 | B-cell lymphoma 6 protein; BTB domain, transcripti | 99.89 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.89 | |
| 2ppi_A | 144 | Gigaxonin; BTB domain, protein degradation, struct | 99.88 | |
| 2z8h_A | 138 | Transcription regulator protein BACH1; BTB, POZ, d | 99.88 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.88 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.88 | |
| 3b84_A | 119 | Zinc finger and BTB domain-containing protein 48; | 99.88 | |
| 2yy9_A | 135 | Zinc finger and BTB domain-containing protein 48; | 99.87 | |
| 1buo_A | 121 | POZ domain, protein (promyelocytic leukemia zinc f | 99.87 | |
| 2vpk_A | 116 | Myoneurin; transcription regulation, transcription | 99.87 | |
| 2ihc_A | 124 | Transcription regulator protein BACH1; BRIC-A-BRAC | 99.87 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.86 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.86 | |
| 3ohu_A | 125 | Transcription regulator protein BACH2; BTB/POZ dom | 99.86 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.86 | |
| 2q81_A | 119 | MIZ-1 protein; BTB/POZ domain, transcription; HET: | 99.86 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.86 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.85 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.85 | |
| 3m5b_A | 119 | Zinc finger and BTB domain-containing protein 32; | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.85 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.85 | |
| 3ga1_A | 129 | Nucleus accumbens-associated protein 1; BTB/POZ do | 99.85 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.84 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.84 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.84 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.84 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.83 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.82 | |
| 3fkc_A | 116 | Transcriptional regulator kaiso; zinc finger and B | 99.82 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.81 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.81 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.81 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.81 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.81 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.8 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.8 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.8 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.78 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.78 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.78 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.77 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.77 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.74 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.74 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.74 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.73 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.73 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.73 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.73 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.72 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.72 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.72 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.71 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.69 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.69 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.68 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.68 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.67 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.66 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.66 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.65 | |
| 2ast_A | 159 | S-phase kinase-associated protein 1A; SCF-substrat | 99.65 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.63 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.62 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.62 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.61 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.6 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.6 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.6 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.59 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.59 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.57 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.57 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.56 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.56 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.56 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.55 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.55 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.55 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.53 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.51 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.51 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.5 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.5 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.48 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.48 | |
| 4ajy_C | 97 | Transcription elongation factor B polypeptide 1; E | 99.47 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.47 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.47 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.46 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.46 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.46 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.45 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.45 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.44 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.44 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.44 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.42 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.41 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.4 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.4 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.4 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.39 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.37 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.37 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.37 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.36 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.36 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.36 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.36 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.35 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.35 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.34 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.34 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.33 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.33 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.33 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.32 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.32 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.32 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.31 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.31 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.31 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.3 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.29 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.29 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.28 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.27 | |
| 1fs1_B | 141 | SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le | 99.27 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.27 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.27 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.27 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.26 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.25 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.25 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.23 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.23 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.22 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.22 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.22 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.21 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.2 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.19 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.19 | |
| 2p1m_A | 160 | SKP1-like protein 1A; F-BOX, leucine rich repeat, | 99.18 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.18 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.17 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.17 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.17 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.16 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.16 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.15 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.15 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.15 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.14 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.11 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.11 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.1 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.1 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.07 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.01 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.0 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.83 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.82 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.82 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.81 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.78 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.77 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.75 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.73 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.72 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.72 | |
| 1hv2_A | 99 | Elongin C, ELC1; protein-peptide complex, signalin | 98.66 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.65 | |
| 2fnj_C | 96 | Transcription elongation factor B polypeptide 1; b | 98.63 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.62 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.62 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.62 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.61 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.57 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.55 | |
| 3v7d_A | 169 | Suppressor of kinetochore protein 1; WD 40 domain, | 98.4 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.33 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.32 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.22 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.2 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.17 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.12 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.11 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.1 | |
| 3drz_A | 107 | BTB/POZ domain-containing protein KCTD5; potassium | 98.09 | |
| 1vcb_B | 112 | Protein (elongin C); tumor suppressor, cancer, ubi | 98.07 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.07 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.06 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.97 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.9 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.88 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.68 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.62 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.62 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.28 | |
| 3drx_A | 202 | BTB/POZ domain-containing protein KCTD5; golgi, gr | 97.09 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.91 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.83 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.6 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.51 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.51 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.5 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.45 | |
| 1s1g_A | 124 | Potassium voltage-gated channel subfamily D membe; | 96.12 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.08 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.02 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.94 | |
| 1nn7_A | 105 | Potassium channel KV4.2; teteramerization domain, | 95.79 | |
| 3kvt_A | 115 | Potassium channel protein SHAW; tetramerization do | 95.77 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.59 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.48 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.44 | |
| 2nz0_B | 140 | Potassium voltage-gated channel subfamily D membe; | 95.37 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.94 | |
| 1t1d_A | 100 | Protein (potassium channel KV1.1); potassium chann | 94.72 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.21 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.09 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.81 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.57 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.23 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.04 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.51 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.49 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.37 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 91.16 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 89.2 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 89.02 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 89.0 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 88.75 | |
| 2eqx_A | 105 | Kelch repeat and BTB domain-containing protein 4; | 88.59 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 88.46 | |
| 2eqx_A | 105 | Kelch repeat and BTB domain-containing protein 4; | 88.43 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.31 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 85.48 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 85.13 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=304.23 Aligned_cols=356 Identities=15% Similarity=0.083 Sum_probs=325.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHH
Q 004336 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 442 (760)
Q Consensus 363 ~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A 442 (760)
+.+...+++.... .++.+.++..+|.+++..|++++|...++.++..+|.+. .++..+|.++...|++++|
T Consensus 16 ~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~------~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 16 EAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA------EAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch------HHHHHHHHHHHHCCCHHHH
Confidence 3444444444333 334456788889999999999999999999999999995 8999999999999999999
Q ss_pred HHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 004336 443 DCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 522 (760)
Q Consensus 443 ~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~ 522 (760)
+..+ ++++..+|++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 87 ~~~~------------------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 87 IEHY------------------RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT
T ss_pred HHHH------------------HHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 9999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcC
Q 004336 523 SHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCG 597 (760)
Q Consensus 523 g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g 597 (760)
|++++|+..|+++++.+|++ .++..+|.++... +.+++|+..+++++.. ..++..+|.++...|
T Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-----------GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-----------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 99999999999999999999 9999999999998 8999999999988433 889999999999999
Q ss_pred CHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHH
Q 004336 598 QLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMV 671 (760)
Q Consensus 598 ~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~ka 671 (760)
++++|+..|++++..+|. .++..+|.++...|++++|+..++++++..|.....+..++ ..|++++|+..++++
T Consensus 218 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 297 (388)
T 1w3b_A 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999998776 88999999999999999999999999999998887766553 459999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 672 TQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 672 l~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l-~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
++.+|.++.++..+|.++...|++++|+..++++++..|++...+. .+.++...|++++|+..|+++++++|++++++.
T Consensus 298 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~ 377 (388)
T 1w3b_A 298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 9999999999999999999999999999999999999999987774 489999999999999999999999999999887
Q ss_pred HHHHhh
Q 004336 751 LHSRVY 756 (760)
Q Consensus 751 ~~~r~~ 756 (760)
.+..+.
T Consensus 378 ~lg~~~ 383 (388)
T 1w3b_A 378 NMGNTL 383 (388)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 766553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=297.60 Aligned_cols=332 Identities=16% Similarity=0.085 Sum_probs=308.9
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHH
Q 004336 389 LGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 468 (760)
Q Consensus 389 lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al 468 (760)
+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|..++ .+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~~~~a~~~~------------------~~a~ 60 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNT------GVLLLLSSIHFQCRRLDRSAHFS------------------TLAI 60 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHH
Confidence 34555666699999999999999999995 88999999999999999999999 9999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHH
Q 004336 469 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFL 547 (760)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~ 547 (760)
..+|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|+. .++..
T Consensus 61 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 140 (388)
T 1w3b_A 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHH
T ss_pred hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHH
Q 004336 548 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGL 621 (760)
Q Consensus 548 la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~L 621 (760)
+|.++... +.+++|++.+.+.+.. ..++.++|.++...|++++|+..|+++++.+|. .++..+
T Consensus 141 l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 209 (388)
T 1w3b_A 141 LGNLLKAL-----------GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209 (388)
T ss_dssp HHHHHHTT-----------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHc-----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999998 9999999999988443 789999999999999999999999999998877 899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 697 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~e 697 (760)
|.++...|++++|+..+++++...|++..++..++ ..|++++|+..++++++.+|+++.++..+|.++...|++++
T Consensus 210 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999998877766553 45999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 698 AIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 698 Ai~~l~kal~~~p~~~~~~l-~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
|+..|+++++..|++...+. .+.++...|++++|+..|+++++.+|+++.++..+..+
T Consensus 290 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999999999987774 48899999999999999999999999998876555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-29 Score=268.95 Aligned_cols=310 Identities=14% Similarity=0.070 Sum_probs=282.3
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..++.+|..++..|++++|+..|++++..+|+++ .++..+|.++...|++++|+.++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~---------------- 60 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY------IAYYRRATVFLAMGKSKAALPDL---------------- 60 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH------HHHHHHHHHHHHccCHHHHHHHH----------------
Confidence 45678888999999999999999999999999995 89999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHH------------HHHHHHCCCHHH
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA---SDHERLVYE------------GWILYDTSHCEE 527 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p---~~~~a~~~L------------g~i~~~~g~~ee 527 (760)
.+++..+|++..+++.+|.++...|++++|+..|+++++..| ++..++..+ |.++...|++++
T Consensus 61 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 61 --TKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp --HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 999999999999999999999999999999999999999999 888888877 789999999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 528 GLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYS 607 (760)
Q Consensus 528 Al~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~ 607 (760)
|+..++++++..|++ ..++..+|.++...|++++|+..|+
T Consensus 139 A~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~ 178 (359)
T 3ieg_A 139 AITFLDKILEVCVWD----------------------------------------AELRELRAECFIKEGEPRKAISDLK 178 (359)
T ss_dssp HHHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc----------------------------------------hHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999988 7788889999999999999999999
Q ss_pred HHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHH----------------HHHhcCCHHHHHHHHH
Q 004336 608 NALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE----------------KRSEYCDRELTRADLE 669 (760)
Q Consensus 608 ~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~----------------~~~~~~~~~~A~~~l~ 669 (760)
++++..|. .++..+|.++...|++++|+..++++++..|+....+. .....|++++|+..++
T Consensus 179 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 258 (359)
T 3ieg_A 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 258 (359)
T ss_dssp HHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99997665 88999999999999999999999999999997765432 1234589999999999
Q ss_pred HHHhhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004336 670 MVTQLDPLRVY----PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAALSVDPN 744 (760)
Q Consensus 670 kal~l~p~~~~----~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l-~a~~~~~~g~~~~A~~~~~~aL~l~P~ 744 (760)
+++..+|+++. .+..+|.++...|++++|+..+++++...|+++..+. .+.++...|++++|+..|+++++++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 259 SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999999874 4667999999999999999999999999999987774 499999999999999999999999999
Q ss_pred cHHHHHHHHHhh
Q 004336 745 DQEMLELHSRVY 756 (760)
Q Consensus 745 ~~~~l~~~~r~~ 756 (760)
++.+...+.++.
T Consensus 339 ~~~~~~~l~~~~ 350 (359)
T 3ieg_A 339 DQQIREGLEKAQ 350 (359)
T ss_dssp CHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 999888777664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=274.38 Aligned_cols=313 Identities=14% Similarity=0.071 Sum_probs=263.5
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
.+..+..+..+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~------------ 83 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY------IAYYRRATVFLAMGKSKAALPDL------------ 83 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH------HHHHHHHHHHHHCCCHHHHHHHH------------
Confidence 456678888999999999999999999999999999995 89999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHH------------HHHHHHCC
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYE------------GWILYDTS 523 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~---~a~~~L------------g~i~~~~g 523 (760)
++++..+|++..+++.+|.+|...|++++|+..|+++++.+|++. .++..+ |.++...|
T Consensus 84 ------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 84 ------TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157 (450)
T ss_dssp ------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999988 776655 66699999
Q ss_pred CHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHH
Q 004336 524 HCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAA 603 (760)
Q Consensus 524 ~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~ 603 (760)
++++|+..|+++++..|.+ ..++..+|.+|...|++++|+
T Consensus 158 ~~~~A~~~~~~~~~~~~~~----------------------------------------~~~~~~l~~~~~~~g~~~~A~ 197 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVWD----------------------------------------AELRELRAECFIKEGEPRKAI 197 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTTCGGGGH
T ss_pred CHHHHHHHHHHHHHhCCCC----------------------------------------hHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999988 667777788888888888888
Q ss_pred HHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHH----------------HHHhcCCHHHHH
Q 004336 604 DCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE----------------KRSEYCDRELTR 665 (760)
Q Consensus 604 ~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~----------------~~~~~~~~~~A~ 665 (760)
..|+++++.+|. .++..+|.++...|++++|+..+++++...|+....+. .....|++++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 277 (450)
T 2y4t_A 198 SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277 (450)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888888776554 77778888888888888888888888887776655432 223447888888
Q ss_pred HHHHHHHhhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 666 ADLEMVTQLDPLRVY----PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 666 ~~l~kal~l~p~~~~----~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
..|++++..+|.++. .+..+|.++...|++++|+..+++++...|++...+ ..+.++...|++++|+..|+++++
T Consensus 278 ~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 278 SKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 888888888888743 677888888888888888888888888888877666 447778888888888888888888
Q ss_pred cCCCcHHHHHHHHHh
Q 004336 741 VDPNDQEMLELHSRV 755 (760)
Q Consensus 741 l~P~~~~~l~~~~r~ 755 (760)
++|+++.+...+.++
T Consensus 358 ~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 358 HNENDQQIREGLEKA 372 (450)
T ss_dssp TSSSCHHHHHHHHHH
T ss_pred hCcchHHHHHHHHHH
Confidence 888888877666644
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-28 Score=278.02 Aligned_cols=336 Identities=14% Similarity=0.092 Sum_probs=263.4
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+.+++.+|..++..|++++|+..|++++..+|+++ .++..+|.++...|++++|+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~--------------- 82 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP------VFYSNISACYISTGDLEKVIEFT--------------- 82 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc------HHHHHHHHHHHHcCCHHHHHHHH---------------
Confidence 455556666666666666666666666666666663 56666666666666666666666
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH---------------------------------------------
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR--------------------------------------------- 496 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~--------------------------------------------- 496 (760)
++++..+|++..+++.+|.++...|++++|+.
T Consensus 83 ---~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 159 (537)
T 3fp2_A 83 ---TKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ 159 (537)
T ss_dssp ---HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------C
T ss_pred ---HHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 66666666666666666666666665555554
Q ss_pred ----------------------------------------------------------------HHHHHHHhCCCcHH--
Q 004336 497 ----------------------------------------------------------------SLQLARQHAASDHE-- 510 (760)
Q Consensus 497 ----------------------------------------------------------------~l~kal~~~p~~~~-- 510 (760)
.|+++++.+|++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~ 239 (537)
T 3fp2_A 160 VLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR 239 (537)
T ss_dssp CCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHH
T ss_pred ccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhh
Confidence 45555566677644
Q ss_pred -----HHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH---
Q 004336 511 -----RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--- 582 (760)
Q Consensus 511 -----a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~--- 582 (760)
++..+|.++...|++++|+..|++++..+|+..++..+|.++... +.+++|+..+.+.+..
T Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~ 308 (537)
T 3fp2_A 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADK-----------ENSQEFFKFFQKAVDLNPE 308 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCS-----------SCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh-----------cCHHHHHHHHHHHhccCCC
Confidence 577788999999999999999999999999888888999998888 8888888888887433
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH---
Q 004336 583 -GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS--- 656 (760)
Q Consensus 583 -~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~--- 656 (760)
..++..+|.++...|++++|+..|+++++.+|. .++..+|.++...|++++|+..++++++..|....++..++
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL 388 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 789999999999999999999999999998776 89999999999999999999999999999998776665543
Q ss_pred -hcCCHHHHHHHHHHHHhhCCCChHH------HHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCcHHHHH-H
Q 004336 657 -EYCDRELTRADLEMVTQLDPLRVYP------YRYRAAVLMDS----------HKENEAIAELSRAIAFKADLHLLHL-R 718 (760)
Q Consensus 657 -~~~~~~~A~~~l~kal~l~p~~~~~------~~~La~~~~~~----------g~~~eAi~~l~kal~~~p~~~~~~l-~ 718 (760)
..|++++|+..++++++.+|.+... +..+|.++... |++++|+..|++++...|++...+. .
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 468 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4589999999999999988765543 56678889998 9999999999999999999987774 4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004336 719 AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 752 (760)
Q Consensus 719 a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~ 752 (760)
+.++...|++++|+..|+++++++|++++.....
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999999999999999876543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-28 Score=282.45 Aligned_cols=340 Identities=12% Similarity=0.038 Sum_probs=304.6
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHH------------------------------
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHML------------------------------ 431 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~------------------------------ 431 (760)
.+..++.+|..+...|++++|+..|+++++.+|++. .++..++.
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY------EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh------HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 567889999999999999999999999999999985 55554543
Q ss_pred --------HHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 432 --------VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 432 --------l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.+...|++++|..++ .+++.. |.+..+++.+|.+|.+.|++++|+..|+++++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~------------------~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYL------------------SSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHH------------------HTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHH------------------HHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333456666666666 666665 78899999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
.+|.+..++..++.++...|++++|+..++++++..|++ .++..++.++... |.+++|++.+.+.+..
T Consensus 334 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 334 IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV-----------NKISEARRYFSKSSTM 402 (597)
T ss_dssp HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998 9999999999998 9999999999988432
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH
Q 004336 583 ----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS 656 (760)
Q Consensus 583 ----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~ 656 (760)
..+|+.+|.+|...|++++|+..|+++++..|. .++..+|.+|...|++++|++.|+++++..|.+...+..++
T Consensus 403 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 482 (597)
T 2xpi_A 403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482 (597)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 789999999999999999999999999997765 89999999999999999999999999999998887776653
Q ss_pred ----hcCCHHHHHHHHHHHHhh------CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHH
Q 004336 657 ----EYCDRELTRADLEMVTQL------DPLR-VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEH 724 (760)
Q Consensus 657 ----~~~~~~~A~~~l~kal~l------~p~~-~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~ 724 (760)
..|++++|+..|+++++. +|+. ..+|..+|.++...|++++|+..++++++..|++...+ ..+.++..
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 459999999999999998 6665 68999999999999999999999999999999988777 45889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 725 TGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 725 ~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
.|++++|.+.|+++++++|+++.+...+.++..
T Consensus 563 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 563 KKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999988887754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-28 Score=272.03 Aligned_cols=336 Identities=13% Similarity=0.060 Sum_probs=231.3
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+.+++..|..++..|+|++|+..|++++..+|+ + .++..+|.++...|++++|+..+
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~------~~~~~la~~~~~~g~~~~A~~~~------------- 62 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-P------VFYSNLSACYVSVGDLKKVVEMS------------- 62 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-H------HHHHHHHHHHHHHTCHHHHHHHH-------------
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-H------HHHHhHHHHHHHHhhHHHHHHHH-------------
Confidence 356788899999999999999999999999999994 3 88999999999999999999999
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------------
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS-------------------------------- 507 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~-------------------------------- 507 (760)
.+++..+|++..+++.+|.++...|++++|+..|++++...|.
T Consensus 63 -----~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (514)
T 2gw1_A 63 -----TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT 137 (514)
T ss_dssp -----HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------
T ss_pred -----HHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988763
Q ss_pred -----------------------------------------------cHHHHHHHHHHHHH---CCCHHHHHHHHHHHHh
Q 004336 508 -----------------------------------------------DHERLVYEGWILYD---TSHCEEGLRKAEESIQ 537 (760)
Q Consensus 508 -----------------------------------------------~~~a~~~Lg~i~~~---~g~~eeAl~~~~~al~ 537 (760)
+..++..+|.+++. .|++++|+..|+++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp -------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 36777888888886 8999999999999999
Q ss_pred -----h--c-------CCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCCH
Q 004336 538 -----M--K-------RSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQL 599 (760)
Q Consensus 538 -----l--~-------p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~~ 599 (760)
+ + |.. .+++.+|.++... +.+++|+..+.+.+.. ..++..+|.++...|++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK-----------NDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDS 286 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS-----------SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCC
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCH
Confidence 5 2 444 7888899988887 6666666666655211 45555555555555555
Q ss_pred HHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH---------------------
Q 004336 600 DLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS--------------------- 656 (760)
Q Consensus 600 ~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~--------------------- 656 (760)
++|+..|+++++..|. .++..+|.++...|++++|+..++++++..|.....+..++
T Consensus 287 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 366 (514)
T 2gw1_A 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR 366 (514)
T ss_dssp TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555554433 45555555555555555555555555555554433333222
Q ss_pred -----------------hcCCHHHHHHHHHHHHhhCCCChH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHcCC
Q 004336 657 -----------------EYCDRELTRADLEMVTQLDPLRVY------PYRYRAAVLMD---SHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 657 -----------------~~~~~~~A~~~l~kal~l~p~~~~------~~~~La~~~~~---~g~~~eAi~~l~kal~~~p 710 (760)
..|++++|+..+++++..+|.+.. ++..+|.++.. .|++++|+..+++++...|
T Consensus 367 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 367 KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 224455555555555554444432 45555555555 5555555555555555555
Q ss_pred CcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004336 711 DLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 751 (760)
Q Consensus 711 ~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~ 751 (760)
++...+ ..+.++...|++++|+..|+++++++|++++++..
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence 544443 22555555555555555555555555555554443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=272.34 Aligned_cols=334 Identities=12% Similarity=0.060 Sum_probs=287.0
Q ss_pred CChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHH
Q 004336 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 440 (760)
Q Consensus 361 ~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~ 440 (760)
..+.+...+++...... .+.++..+|.+++..|++++|+..|+++++.+|++. .++..+|.++...|+++
T Consensus 21 ~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 21 KYDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS------KVLLRRASANEGLGKFA 90 (514)
T ss_dssp CHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH------HHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHhcCc----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH------HHHHHHHHHHHHHhhHH
Confidence 45566666666665532 367889999999999999999999999999999995 89999999999999999
Q ss_pred HHHHHHhhhcccc-------------------------------------------------------------------
Q 004336 441 IADCWLQLYDRWS------------------------------------------------------------------- 453 (760)
Q Consensus 441 ~A~~~l~l~~~~~------------------------------------------------------------------- 453 (760)
+|+..+.......
T Consensus 91 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 91 DAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 9998775331111
Q ss_pred -------------------------------ccCCcCcHHHHHHHHH-----h--C-------CCcHHHHHHHHHHHHHc
Q 004336 454 -------------------------------SVDDIGSLSVIYQMLE-----S--D-------APKGVLYFRQSLLLLRL 488 (760)
Q Consensus 454 -------------------------------~~~d~~sl~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~ 488 (760)
..+...++..+.+++. . + |.++.+++.+|.++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 0011123445677777 4 3 55678899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhh
Q 004336 489 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVS 567 (760)
Q Consensus 489 g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~ 567 (760)
|++++|+..|+++++..|. ..++..+|.++...|++++|+..+++++..+|.+ .++..+|.++... +
T Consensus 251 ~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~ 318 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL-----------Q 318 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT-----------T
T ss_pred CCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh-----------C
Confidence 9999999999999999999 9999999999999999999999999999999998 9999999999998 8
Q ss_pred HHHHHHhhhHhhcc--H--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 568 LLEDALKCPSDRLR--K--GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKL 641 (760)
Q Consensus 568 ~leeAl~~~~~~l~--~--~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~a 641 (760)
.+++|+..+.+.+. + ..++..+|.++...|++++|+..|+++++..|. .++..+|.++...|++++|+..++++
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888888732 2 789999999999999999999999999997765 89999999999999999999999999
Q ss_pred HHhccCcHH------HHHH----HHh---cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 642 IKKARNNAS------AYEK----RSE---YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 642 l~~~~~~~~------~~~~----~~~---~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
++..|.... .+.. ... .|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999886532 3332 235 789999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHH
Q 004336 709 KADLHLLH 716 (760)
Q Consensus 709 ~p~~~~~~ 716 (760)
.|+++..+
T Consensus 479 ~~~~~~~~ 486 (514)
T 2gw1_A 479 ARTMEEKL 486 (514)
T ss_dssp CSSHHHHH
T ss_pred ccccHHHH
Confidence 99988765
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-26 Score=264.56 Aligned_cols=373 Identities=13% Similarity=0.039 Sum_probs=289.8
Q ss_pred CCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCH
Q 004336 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNW 439 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~ 439 (760)
...+.+...++++.....+ ...++.+|.++...|++++|+..|++++.. |.++ .++..++.++...|++
T Consensus 98 g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~------~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 98 QQYKCAAFVGEKVLDITGN----PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSS------ACRYLAAFCLVKLYDW 166 (597)
T ss_dssp TCHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCH------HHHHHHHHHHHHTTCH
T ss_pred cCchHHHHHHHHHHhhCCC----chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccch------hHHHHHHHHHHHHhhH
Confidence 3445566666666543322 145678899999999999999999998765 4453 7899999999999999
Q ss_pred HHHHHHHhhhcccc--------------------------------ccCCcCcHHHHHHHHHhCCCcHHHHHHHHH----
Q 004336 440 TIADCWLQLYDRWS--------------------------------SVDDIGSLSVIYQMLESDAPKGVLYFRQSL---- 483 (760)
Q Consensus 440 ~~A~~~l~l~~~~~--------------------------------~~~d~~sl~~~~~al~~~p~~~~~~~~la~---- 483 (760)
++|+..+....... ..+...++..+++++..+|++..++..++.
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 246 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLL 246 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcc
Confidence 99999994211100 000001233344444444444444443322
Q ss_pred ----------------------------------HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Q 004336 484 ----------------------------------LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 484 ----------------------------------~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
.|.+.|++++|++.|+++++. |.+..++..+|.++...|++++|+
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp CHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHH
Confidence 122344444455555444444 455667778888899999999999
Q ss_pred HHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHH
Q 004336 530 RKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAAD 604 (760)
Q Consensus 530 ~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~ 604 (760)
..|+++++.+|++ .++..++.++... +.+++|...+.+.+.. ..+++.+|.+|...|++++|+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 326 AITTKILEIDPYNLDVYPLHLASLHES-----------GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHHHHHHHHCTTCCTTHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999988 8888999998888 8889999988887432 7899999999999999999999
Q ss_pred HHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH----HhcCCHHHHHHHHHHHHhhCCCC
Q 004336 605 CYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR----SEYCDRELTRADLEMVTQLDPLR 678 (760)
Q Consensus 605 ~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~----~~~~~~~~A~~~l~kal~l~p~~ 678 (760)
.|+++++.+|. .++..++.+|...|++++|++.|+++++..|++...+..+ ...|++++|+..|+++++.+|.+
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999997765 7999999999999999999999999999999776665544 34599999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCc-HHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 679 VYPYRYRAAVLMDSHKENEAIAELSRAIAF------KADL-HLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 679 ~~~~~~La~~~~~~g~~~eAi~~l~kal~~------~p~~-~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
+.+|..+|.++.+.|++++|++.|+++++. .|+. ...+ ..+.++...|++++|++.|+++++.+|+++.++.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999999999999988 5553 3344 4588888899999999999999999999998876
Q ss_pred HHHHh
Q 004336 751 LHSRV 755 (760)
Q Consensus 751 ~~~r~ 755 (760)
.+..+
T Consensus 555 ~l~~~ 559 (597)
T 2xpi_A 555 AIALV 559 (597)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-25 Score=251.04 Aligned_cols=319 Identities=15% Similarity=0.126 Sum_probs=276.6
Q ss_pred CCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCH
Q 004336 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNW 439 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~ 439 (760)
...+.+...+++..+. .+..+.+++.+|.++...|++++|+..|+++++.+|++. .++..+|.++...|++
T Consensus 40 g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~ 110 (450)
T 2y4t_A 40 GQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT------AARLQRGHLLLKQGKL 110 (450)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHcCCH
Confidence 3455666666665544 234577889999999999999999999999999999995 8999999999999999
Q ss_pred HHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh
Q 004336 440 TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG---VLYFRQ------------SLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 440 ~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
++|+.++ ++++..+|.+. .++..+ |..+...|++++|+..|+++++.
T Consensus 111 ~~A~~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 111 DEAEDDF------------------KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172 (450)
T ss_dssp HHHHHHH------------------HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------HHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999 99999999988 776655 66799999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHH
Q 004336 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 584 (760)
Q Consensus 505 ~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~ 584 (760)
.|.+..++..+|.++...|++++|+..|+++++.+|++ ..
T Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------------------------------~~ 212 (450)
T 2y4t_A 173 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN----------------------------------------TE 212 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC----------------------------------------HH
T ss_pred CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------------------------HH
Confidence 99999999999999999999999999999999999988 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhccCcHH
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGL------------ARVHFLKNNKTTAYEEMTKLIKKARNNAS 650 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~L------------a~~~~~~g~~~~A~~~l~~al~~~~~~~~ 650 (760)
++..+|.+|...|++++|+..|++++...|. ..+..+ |.++...|++++|+..|+++++..|.+..
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 292 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE 292 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH
Confidence 8899999999999999999999999987666 444333 99999999999999999999999997643
Q ss_pred ----HHHH----HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-H--
Q 004336 651 ----AYEK----RSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-A-- 719 (760)
Q Consensus 651 ----~~~~----~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a-- 719 (760)
.+.. ....|++++|+..++++++.+|+++.+|..+|.++...|++++|+..|+++++..|++...+.. +
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 3322 2355899999999999999999999999999999999999999999999999999999877622 3
Q ss_pred ----------HHHHHcC-----CHHHHHHHHHH-HHhcCCCc
Q 004336 720 ----------AFHEHTG-----DVLGALRDCRA-ALSVDPND 745 (760)
Q Consensus 720 ----------~~~~~~g-----~~~~A~~~~~~-aL~l~P~~ 745 (760)
.+|..+| +.+++.+.|++ +++..|++
T Consensus 373 ~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 373 QRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 3344445 66788999996 88888874
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-26 Score=242.13 Aligned_cols=286 Identities=14% Similarity=0.066 Sum_probs=245.2
Q ss_pred HHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHH
Q 004336 385 AFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 464 (760)
Q Consensus 385 a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~ 464 (760)
.+...|..++..|++++|+..|++++..+|.+. .++..++.++...|++++|..++
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~------------------ 79 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA------SCLPVHIGTLVELNKANELFYLS------------------ 79 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------TTHHHHHHHHHHHTCHHHHHHHH------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh------hhHHHHHHHHHHhhhHHHHHHHH------------------
Confidence 344556666666799999999999999999996 78888999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLN-CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g-~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
.+++..+|.++.+++.+|.++...| ++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|+.
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~- 158 (330)
T 3hym_B 80 HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC- 158 (330)
T ss_dssp HHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc-
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHH
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGL 621 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~L 621 (760)
..++..+|.++...|++++|+..|+++++..|. .++..+
T Consensus 159 ---------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 199 (330)
T 3hym_B 159 ---------------------------------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199 (330)
T ss_dssp ---------------------------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 567788999999999999999999999998776 899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~ 701 (760)
|.++...|++++|+..++++++..+.... ....|..+.++..+|.++...|++++|+..
T Consensus 200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGN---------------------EVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTTSC---------------------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhhhccc---------------------cccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999988877642110 000145567777888888888888888888
Q ss_pred HHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 702 LSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 702 l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
+++++...|++...+ ..+.++...|++++|+..|+++++++|+++.++..+..+
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 313 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHH
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence 888888888777665 337777777888888888888888888888777665553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-25 Score=234.27 Aligned_cols=290 Identities=14% Similarity=0.080 Sum_probs=258.2
Q ss_pred CCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCH
Q 004336 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNW 439 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~ 439 (760)
+..+.+...+++..... +..+.+++.+|.++...|++++|+..|++++..+|++. .++..+|.++...|++
T Consensus 17 g~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 17 GQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT------AARLQRGHLLLKQGKL 87 (359)
T ss_dssp TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc------hHHHHHHHHHHHcCCh
Confidence 34556666666665543 34467889999999999999999999999999999995 8999999999999999
Q ss_pred HHHHHHHhhhccccccCCcCcHHHHHHHHHhCC---CcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh
Q 004336 440 TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA---PKGVLYFRQ------------SLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 440 ~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
++|+.++ ++++..+| ++..++..+ |.++...|++++|+..++++++.
T Consensus 88 ~~A~~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 88 DEAEDDF------------------KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149 (359)
T ss_dssp HHHHHHH------------------HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999 99999999 888888877 78999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHH
Q 004336 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 584 (760)
Q Consensus 505 ~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~ 584 (760)
.|.++.++..+|.++...|++++|+..+++++...|++ ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------~~ 189 (359)
T 3ieg_A 150 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN----------------------------------------TE 189 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC----------------------------------------HH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------------------------HH
Confidence 99999999999999999999999999999999999998 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhccCcHH
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAH------------QGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 650 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~------------~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~ 650 (760)
++..+|.++...|++++|+..|+++++..|. .++ ..+|.++...|++++|+..++++++..|....
T Consensus 190 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 269 (359)
T 3ieg_A 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE 269 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 8889999999999999999999999997665 322 34588899999999999999999999997653
Q ss_pred HH--------HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Q 004336 651 AY--------EKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 651 ~~--------~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~ 716 (760)
.. ......|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++..|++..++
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 343 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence 32 1223568999999999999999999999999999999999999999999999999999998776
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=244.74 Aligned_cols=337 Identities=11% Similarity=0.005 Sum_probs=249.9
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcc---hhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRM---FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 456 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~---~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~ 456 (760)
...+..|..+|.++..+|++++|++.|++++++.+.... -.....++..+|.++..+|++++|..++
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~---------- 117 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV---------- 117 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHH----------
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHH----------
Confidence 345677888999999999999999999999987321100 0011367889999999999999999999
Q ss_pred CcCcHHHHHHHHHh--------CCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HCC
Q 004336 457 DIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRL--NCPEAAMRSLQLARQHAASDHERLVYEGWILY---DTS 523 (760)
Q Consensus 457 d~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~--g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~---~~g 523 (760)
++++.. .+..+.++..+|.++... +++++|+.+|+++++++|++++++..+|.++. ..+
T Consensus 118 --------~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~ 189 (472)
T 4g1t_A 118 --------DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWP 189 (472)
T ss_dssp --------HHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSC
T ss_pred --------HHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCch
Confidence 676664 245688899999877765 47999999999999999999999999998855 467
Q ss_pred CHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCC
Q 004336 524 HCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQ 598 (760)
Q Consensus 524 ~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~ 598 (760)
+.++|+..++++++++|++ .++..+|..+....... +.+++|.+.+++++.. ..++.++|.+|...|+
T Consensus 190 ~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~-------~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 190 PSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG-------EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp CCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc
Confidence 8899999999999999999 77777777766542222 4455566666555322 6777788888888888
Q ss_pred HHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 004336 599 LDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDP 676 (760)
Q Consensus 599 ~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p 676 (760)
+++|+..|+++++..|. .++..+|.+|...+....+...... +.... .....++|+..++++++++|
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM--------YGKRK---LLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC--------------CHHH---HHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH--------HHHHH---HHhhHHHHHHHHHHHhhcCC
Confidence 88888888888877666 6777777777654332221111100 00000 11235788999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH---H--HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004336 677 LRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLL---H--LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 751 (760)
Q Consensus 677 ~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~---~--l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~ 751 (760)
....++..+|.++...|++++|+..|++++...|++... + ++.......|++++|+..|+++++++|++.+....
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~ 411 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM 411 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 999999999999999999999999999999998877633 2 23344556799999999999999998887765444
Q ss_pred H
Q 004336 752 H 752 (760)
Q Consensus 752 ~ 752 (760)
+
T Consensus 412 ~ 412 (472)
T 4g1t_A 412 K 412 (472)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=252.19 Aligned_cols=335 Identities=11% Similarity=0.050 Sum_probs=281.3
Q ss_pred CChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHH
Q 004336 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 440 (760)
Q Consensus 361 ~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~ 440 (760)
..+.+...+++.... .++.+.+++.+|.++...|++++|+..|++++..+|++. .++..+|.++...|+++
T Consensus 40 ~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 40 NFNEAIKYYQYAIEL---DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS------KALLRRASANESLGNFT 110 (537)
T ss_dssp CCC-CHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH------HHHHHHHHHHHHcCCHH
Confidence 344555566665554 234568899999999999999999999999999999995 89999999999999999
Q ss_pred HHHHHHhhhcccccc-----------------------------------------------------------------
Q 004336 441 IADCWLQLYDRWSSV----------------------------------------------------------------- 455 (760)
Q Consensus 441 ~A~~~l~l~~~~~~~----------------------------------------------------------------- 455 (760)
+|+..++........
T Consensus 111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 999877322100000
Q ss_pred --------------------------CCcCcHHHHHHHHHhCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 456 --------------------------DDIGSLSVIYQMLESDAPKGV-------LYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 456 --------------------------~d~~sl~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
.-..++..+++++..+|++.. +++.+|.++...|++++|+..|++++
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 001234457778888898855 57788899999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 581 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~ 581 (760)
+.+|+ ..++..+|.++...|++++|+..+++++..+|++ .++..+|.++... +.+++|+..+.+.+.
T Consensus 271 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 271 NLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL-----------QDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHH
T ss_pred hcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999 9999999999998 999999999998844
Q ss_pred H----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHH-----
Q 004336 582 K----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS----- 650 (760)
Q Consensus 582 ~----~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~----- 650 (760)
. ..++..+|.++...|++++|+..|+++++..|. .++..+|.++...|++++|+..++++++..|....
T Consensus 339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 3 789999999999999999999999999998776 89999999999999999999999999999873221
Q ss_pred --H---HHHHHhc----------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Q 004336 651 --A---YEKRSEY----------CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLL 715 (760)
Q Consensus 651 --~---~~~~~~~----------~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~ 715 (760)
. ....... |++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++..|+....
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 1 1112233 888999999999999999999999999999999999999999999999999998866
Q ss_pred H
Q 004336 716 H 716 (760)
Q Consensus 716 ~ 716 (760)
.
T Consensus 499 ~ 499 (537)
T 3fp2_A 499 L 499 (537)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=243.64 Aligned_cols=303 Identities=11% Similarity=0.035 Sum_probs=248.2
Q ss_pred HHhcCCHHHHHH-HHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC
Q 004336 393 RLLRKEYDEAEH-LFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 471 (760)
Q Consensus 393 ~l~~g~~~eA~~-~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~ 471 (760)
+...|+|++|+. .|++++...|+++.. ...+++.+|.++...|++++|+.++ .+++..+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~------------------~~al~~~ 94 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLR--DHPQPFEEGLRRLQEGDLPNAVLLF------------------EAAVQQD 94 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTT--TCSSHHHHHHHHHHTTCHHHHHHHH------------------HHHHHSC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCccc--chHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhC
Confidence 344459999999 999999999887521 1256888999999999999999999 9999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAY 550 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~ 550 (760)
|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|++ ..+..++.
T Consensus 95 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 174 (368)
T 1fch_A 95 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 174 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 32222211
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHH
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHF 626 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~ 626 (760)
.... ......+..+|.++ ..|++++|+..|+++++..|. .++..+|.++.
T Consensus 175 ~~~~-------------------------~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 175 GAGG-------------------------AGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp ------------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred Hhhh-------------------------hcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 1000 01123344567666 889999999999999997665 78889999999
Q ss_pred HcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 627 LKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAEL 702 (760)
Q Consensus 627 ~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l 702 (760)
..|++++|+..++++++..|....++..++ ..|++++|+..++++++++|.++.++..+|.++...|++++|+..|
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999998877766554 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCc-----------HHHH-HHHHHHHHcCCHHHHHHHHHHHHhc
Q 004336 703 SRAIAFKADL-----------HLLH-LRAAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 703 ~kal~~~p~~-----------~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
++++...|++ ...+ ..+.++..+|++++|...++++++.
T Consensus 309 ~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 309 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9999999887 5555 4488899999999999999877653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-24 Score=240.51 Aligned_cols=366 Identities=11% Similarity=0.027 Sum_probs=265.2
Q ss_pred HHHHhhHhhcccCCCChhHHHHHHHHHHHHHh------HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcch-
Q 004336 347 LYCLLSEVAMNLDPRSDKTVCFLERLLESAET------DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMF- 419 (760)
Q Consensus 347 l~~~l~~v~~~~~~~~~~~~~lle~l~~~a~~------~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~- 419 (760)
+|..++.+.. ..+..+.+...+++..+.... ....+..+..+|.+|..+|++++|+.+|++++.+.|.....
T Consensus 53 ~yn~Lg~~~~-~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 53 MCNLLAYLKH-LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 4555555543 334566666666665544321 34457788999999999999999999999999875432211
Q ss_pred -hchHHHHHHHHHHHHHc--cCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHH
Q 004336 420 -EGRVAASQLHMLVREHI--DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL---RLNCPEA 493 (760)
Q Consensus 420 -~~~~~a~~~lg~l~~~~--g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~ 493 (760)
.....++..+|..+... +++++|+.++ ++++..+|+++.++..+|.++. ..++.++
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~------------------~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCF------------------EKALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHH------------------HHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHhcCchHHHH
Confidence 01135677777666554 5799999999 9999999999999999998755 4577789
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhH
Q 004336 494 AMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSL 568 (760)
Q Consensus 494 Ai~~l~kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~ 568 (760)
|++.|+++++++|+++.++..+|..+.. .|++++|+..+++++..+|+. .++..+|.++... +.
T Consensus 194 al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~-----------~~ 262 (472)
T 4g1t_A 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK-----------DE 262 (472)
T ss_dssp THHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT-----------TC
T ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHc-----------Cc
Confidence 9999999999999999999888877655 467889999999999999999 9999999999998 88
Q ss_pred HHHHHhhhHhhccH----HHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhhcch--HHHHHHHH
Q 004336 569 LEDALKCPSDRLRK----GQALNNLGSVYVDC-------------------GQLDLAADCYSNALKIRHT--RAHQGLAR 623 (760)
Q Consensus 569 leeAl~~~~~~l~~----~~a~~~Lg~~y~~~-------------------g~~~eA~~~~~~Al~~~~~--~a~~~La~ 623 (760)
+++|+..+.+++.. +.++.++|.+|... +.+++|+..|+++++.+|. .++..+|.
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~ 342 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHH
Confidence 99999998888443 78888899887643 3467899999999988777 78899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhccCcHHH---HHHH-----HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004336 624 VHFLKNNKTTAYEEMTKLIKKARNNASA---YEKR-----SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 624 ~~~~~g~~~~A~~~l~~al~~~~~~~~~---~~~~-----~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~ 695 (760)
++...|++++|+..|+++++..++.... +... ...+++++|+..|+++++++|+...... ..
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~ 412 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MK 412 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HH
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HH
Confidence 9999999999999999999988754332 2211 2347899999999999999998765332 23
Q ss_pred HHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004336 696 NEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 752 (760)
Q Consensus 696 ~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~ 752 (760)
..+...+++++..+|+++..+ ..|.+|...|++++|+++|++||+++|.+|.+....
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 456677889999999988666 558899999999999999999999999998776543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=235.89 Aligned_cols=261 Identities=13% Similarity=0.027 Sum_probs=178.0
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++ +
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~------------------~ 123 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDA------EAWQFLGITQAENENEQAAIVAL------------------Q 123 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCH------HHHHHHHHHHHHCCCHHHHHHHH------------------H
Confidence 44445555555577777777777777777664 66666777777777777777666 6
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH----------HHHHHHCCCHHHHHHHHHHH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE----------GWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~L----------g~i~~~~g~~eeAl~~~~~a 535 (760)
+++..+|+++.+++.+|.+|...|++++|+..|+++++..|++...+..+ |.++...|++++|+..|+++
T Consensus 124 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 203 (365)
T 4eqf_A 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66666777777777777777777777777777777776666655444433 66666677777777777777
Q ss_pred HhhcCC--hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 536 IQMKRS--FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 536 l~l~p~--~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
++.+|+ + +.++..+|.+|...|++++|+.+|+++++..
T Consensus 204 l~~~p~~~~----------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 243 (365)
T 4eqf_A 204 AHQNGDMID----------------------------------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243 (365)
T ss_dssp HHHSCSSCC----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhCcCccC----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 766666 4 4566667777777777777777777777655
Q ss_pred ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004336 614 HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 691 (760)
Q Consensus 614 ~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~ 691 (760)
|. .++..+|.++...|++ ++|+..|+++++++|+++.++..+|.++..
T Consensus 244 p~~~~~~~~l~~~~~~~g~~------------------------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 244 PEDYSLWNRLGATLANGDRS------------------------------EEAVEAYTRALEIQPGFIRSRYNLGISCIN 293 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCH------------------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCH------------------------------HHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 54 6666777777766666 555555556666677778888899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCc------------HHHH-HHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 692 SHKENEAIAELSRAIAFKADL------------HLLH-LRAAFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 692 ~g~~~eAi~~l~kal~~~p~~------------~~~~-l~a~~~~~~g~~~~A~~~~~~aL~ 740 (760)
.|++++|+..|++++...|+. ..++ ..+.++..+|+.+.|....++.+.
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 999999999999999988773 2233 447778888999988887776443
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-26 Score=236.97 Aligned_cols=146 Identities=16% Similarity=0.222 Sum_probs=126.5
Q ss_pred CCCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCC--CCccceeEecCCCCCHHHHHHHHhccccCccCCCChh
Q 004336 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN 253 (760)
Q Consensus 176 ~~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~--e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~ 253 (760)
-.++.+|||+|+|||++|+|||.|||++|+||++||++++. |+...+|+|+ |+++++|+.+++|+|||++. ++.+
T Consensus 26 ~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~--~v~~~~f~~ll~~~Yt~~~~-i~~~ 102 (256)
T 3hve_A 26 REESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE--GISVMVMREILDYIFSGQIR-LNED 102 (256)
T ss_dssp CC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECS--SCCHHHHHHHHHHHHHSCCC-CC-C
T ss_pred HhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeC--CCCHHHHHHHHhhccCCCCc-ccHh
Confidence 35788999999999999999999999999999999999998 7788899998 89999999999999999997 9999
Q ss_pred hHHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchh
Q 004336 254 LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVV 325 (760)
Q Consensus 254 ~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~ 325 (760)
||++++.+|++|+++.|++.|+.||...+ +++||++++.+|..+++..|...|.+++.++|......+++.
T Consensus 103 ~v~~ll~~A~~l~i~~l~~~c~~~L~~~l-~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~ 173 (256)
T 3hve_A 103 TIQDVVQAADLLLLTDLKTLCCEFLEGCI-AAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFL 173 (256)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHHTC-CSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHhhC-CHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchh
Confidence 99999999999999999999999999998 789999999999999999999999999999998766655554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=228.25 Aligned_cols=266 Identities=15% Similarity=0.035 Sum_probs=211.2
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++ .
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~------------------~ 79 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPERE------EAWRSLGLTQAENEKDGLAIIAL------------------N 79 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------H
Confidence 45556666666688888888888888888874 77888888888888888888888 8
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH--------------HH-HHHHCCCHHHHHH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE--------------GW-ILYDTSHCEEGLR 530 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~L--------------g~-i~~~~g~~eeAl~ 530 (760)
+++..+|.+..+++.+|.++...|++++|+..++++++..|.+...+..+ |. ++...|++++|+.
T Consensus 80 ~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 80 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHH
T ss_pred HHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 88888888888888888888888888888888888888888877766666 55 5777788888888
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 531 KAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 531 ~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
.++++++..|++ ..++..+|.++...|++++|+..|++++
T Consensus 160 ~~~~~~~~~~~~----------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 199 (327)
T 3cv0_A 160 LLHAALEMNPND----------------------------------------AQLHASLGVLYNLSNNYDSAAANLRRAV 199 (327)
T ss_dssp HHHHHHHHSTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCC----------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888888887777 6778888888888888888888888888
Q ss_pred hhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 004336 611 KIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAV 688 (760)
Q Consensus 611 ~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~ 688 (760)
+..|. .++..+|.++...|++++|+..++ ++++.+|.+..++..+|.+
T Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~------------------------------~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 200 ELRPDDAQLWNKLGATLANGNRPQEALDAYN------------------------------RALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH------------------------------HHHHHCTTCHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH------------------------------HHHHcCCCCHHHHHHHHHH
Confidence 87665 778888888888888755555555 4555566677788888999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC------------cHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004336 689 LMDSHKENEAIAELSRAIAFKAD------------LHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPND 745 (760)
Q Consensus 689 ~~~~g~~~eAi~~l~kal~~~p~------------~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~ 745 (760)
+...|++++|+..+++++...|+ ....+ ..+.++..+|++++|...++++++..|++
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999998 56555 44888899999999999999888765543
|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=218.13 Aligned_cols=141 Identities=22% Similarity=0.312 Sum_probs=130.8
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|+|++|+|||.||+++|+||++||+++|.|+...+|.|+ ++++++|+.+++|+|||++. ++.+++.
T Consensus 30 ~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~f~~~l~~~Yt~~~~-~~~~~~~ 106 (172)
T 3htm_A 30 ENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKAP-NLDKMAD 106 (172)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEEC--SSCHHHHHHHHHHHHHSCCT-TGGGTHH
T ss_pred hCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEec--CCCHHHHHHHHHHHhCCCCC-CcHHHHH
Confidence 36678999999999999999999999999999999999999999999998 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCc
Q 004336 257 EILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND 321 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~ 321 (760)
+|+.+|++|+++.|++.|+.||...+ +..|++.++.+|..++.+.|...|.+++.+++...+..
T Consensus 107 ~ll~~A~~~~~~~l~~~c~~~l~~~l-~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s 170 (172)
T 3htm_A 107 DLLAAADKYALERLKVMCEDALCSNL-SVENAAEILILADLHSADQLKTQAVDFINYHATDVLET 170 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999988 78999999999999999999999999999999876543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-23 Score=219.85 Aligned_cols=273 Identities=12% Similarity=0.013 Sum_probs=233.2
Q ss_pred CCChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHcc-C
Q 004336 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHID-N 438 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g-~ 438 (760)
+..+.+...+++..... +.....+..++.++...|++++|+..+++++..+|+++ .++..+|.++...| +
T Consensus 36 g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 36 CDFKMCYKLTSVVMEKD---PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP------VSWFAVGCYYLMVGHK 106 (330)
T ss_dssp TCHHHHHHHHHHHHHHC---TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST------HHHHHHHHHHHHSCSC
T ss_pred CCHHHHHHHHHHHHHcC---CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH------HHHHHHHHHHHHhhhh
Confidence 34455566666655442 22344556667777888899999999999999999996 89999999999999 9
Q ss_pred HHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004336 439 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 518 (760)
Q Consensus 439 ~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i 518 (760)
+++|+.++ ++++..+|.++.+++.+|.++...|++++|+..|+++++..|++..++..+|.+
T Consensus 107 ~~~A~~~~------------------~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 168 (330)
T 3hym_B 107 NEHARRYL------------------SKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHH------------------HHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHH------------------HHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCC
Q 004336 519 LYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ 598 (760)
Q Consensus 519 ~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~ 598 (760)
+...|++++|+..++++++..|++ ..++..+|.++...|+
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~~----------------------------------------~~~~~~l~~~~~~~~~ 208 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPED----------------------------------------PFVMHEVGVVAFQNGE 208 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTC----------------------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCC----------------------------------------hHHHHHHHHHHHHccc
Confidence 999999999999999999999998 7889999999999999
Q ss_pred HHHHHHHHHHHHhhc---------ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHH
Q 004336 599 LDLAADCYSNALKIR---------HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRAD 667 (760)
Q Consensus 599 ~~eA~~~~~~Al~~~---------~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~ 667 (760)
+++|+..|+++++.. +. .++..+|.++...|++++|+..+++
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------------------------- 261 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ--------------------------- 261 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH---------------------------
Confidence 999999999999853 22 7999999999999998666655554
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHH-HHcCCHH
Q 004336 668 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFH-EHTGDVL 729 (760)
Q Consensus 668 l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~-~~~g~~~ 729 (760)
+++.+|+++.++..+|.++...|++++|+..++++++..|++...+.. +.++ ...|+.+
T Consensus 262 ---a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 262 ---ALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp ---HHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred ---HHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 455556777888888999999999999999999999999998876633 5555 4556543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.2e-24 Score=228.61 Aligned_cols=260 Identities=14% Similarity=0.061 Sum_probs=218.3
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..++.+|..++..|++++|+..|+++++.+|++. .++..+|.++...|++++|+.++
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~----------------- 121 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM------EAWQYLGTTQAENEQELLAISAL----------------- 121 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH------HHHHHHHHHHHHTTCHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCcCHHHHHHHH-----------------
Confidence 4456778888888899999999999999999995 89999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH----------------HHHHHHHHCCCHHH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV----------------YEGWILYDTSHCEE 527 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~----------------~Lg~i~~~~g~~ee 527 (760)
.+++..+|+++.+++.+|.++...|++++|+..|++++...|.+...+. .+|.++ ..|++++
T Consensus 122 -~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 199 (368)
T 1fch_A 122 -RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLE 199 (368)
T ss_dssp -HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHH
T ss_pred -HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHH
Confidence 9999999999999999999999999999999999999999998877664 467666 9999999
Q ss_pred HHHHHHHHHhhcCC--hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHH
Q 004336 528 GLRKAEESIQMKRS--FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADC 605 (760)
Q Consensus 528 Al~~~~~al~l~p~--~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~ 605 (760)
|+..|+++++.+|+ . ..++..+|.++...|++++|+..
T Consensus 200 A~~~~~~a~~~~p~~~~----------------------------------------~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 200 VKELFLAAVRLDPTSID----------------------------------------PDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp HHHHHHHHHHHSTTSCC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcCccc----------------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998 5 56667777777777777777777
Q ss_pred HHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCC-
Q 004336 606 YSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLR- 678 (760)
Q Consensus 606 ~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~- 678 (760)
|+++++..|. .++..+|.++...|++++|+..++++++..|....++..++ ..|++++|+..+++++.++|++
T Consensus 240 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 240 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 7777776554 66777777777777777777777777777776655554443 3477777777777777777766
Q ss_pred ----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 679 ----------VYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 679 ----------~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
..+|..+|.++...|++++|...++++++.
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 320 GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 889999999999999999999998877754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=235.23 Aligned_cols=256 Identities=14% Similarity=0.023 Sum_probs=225.7
Q ss_pred HHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 004336 409 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 488 (760)
Q Consensus 409 aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~ 488 (760)
++.++|++. .++..+|.++...|++++|+..+ .+++..+|++..+|+.+|.++..+
T Consensus 89 ai~~~p~~~------~a~~~lg~~~~~~g~~~~Al~~~------------------~~al~l~P~~~~a~~~~g~~l~~~ 144 (382)
T 2h6f_A 89 QIIYSDKFR------DVYDYFRAVLQRDERSERAFKLT------------------RDAIELNAANYTVWHFRRVLLKSL 144 (382)
T ss_dssp EECCCHHHH------HHHHHHHHHHHHTCCCHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hhhCChhhH------HHHHHHHHHHHHCCChHHHHHHH------------------HHHHHhCccCHHHHHHHHHHHHHc
Confidence 455666664 88999999999999999999999 999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhh
Q 004336 489 NC-PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVS 567 (760)
Q Consensus 489 g~-~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~ 567 (760)
|+ +++|+..|++++.++|++..+|+++|.++..+|++++|+..|+++++++|++
T Consensus 145 g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------------------------- 199 (382)
T 2h6f_A 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------------------------- 199 (382)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------------------------
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------------------------
Confidence 97 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 004336 568 LLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL-KNNKTTAYEEMTKLIKK 644 (760)
Q Consensus 568 ~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~-~g~~~~A~~~l~~al~~ 644 (760)
..+|+++|.++...|++++|+.+|+++++++|. .+|+++|.++.. .|..++|+
T Consensus 200 ---------------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~--------- 255 (382)
T 2h6f_A 200 ---------------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV--------- 255 (382)
T ss_dssp ---------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH---------
T ss_pred ---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH---------
Confidence 889999999999999999999999999998877 899999999999 55445554
Q ss_pred ccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcHHHH-HHHHH
Q 004336 645 ARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSH--KENEAIAELSRAIAFKADLHLLH-LRAAF 721 (760)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g--~~~eAi~~l~kal~~~p~~~~~~-l~a~~ 721 (760)
.+.++..+++++.++|++..+|+++|.++...| ++++|++.+.++ ...|++..++ ..+.+
T Consensus 256 ----------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 256 ----------------LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDI 318 (382)
T ss_dssp ----------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence 134567788888999999999999999999988 689999999888 8888888666 44778
Q ss_pred HHHcC--------C-HHHHHHHHHHH-HhcCCCcHHHHHHHHH
Q 004336 722 HEHTG--------D-VLGALRDCRAA-LSVDPNDQEMLELHSR 754 (760)
Q Consensus 722 ~~~~g--------~-~~~A~~~~~~a-L~l~P~~~~~l~~~~r 754 (760)
+..+| + +++|++.|+++ ++++|.....+..+.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 87764 2 58999999999 9999999887765544
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=235.94 Aligned_cols=148 Identities=20% Similarity=0.339 Sum_probs=129.4
Q ss_pred CCccceeEEEEec---CeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCC----CCCHHHHHHHHhccccCccCC
Q 004336 177 GDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSEN----NISPSGLRIISDFSVTGSLNG 249 (760)
Q Consensus 177 ~~~~~~dv~~~~~---~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~----~i~~~~~~~~~~~~yt~~~~~ 249 (760)
.++.+|||+|+|| |++|+|||.|||++|+||++||+++|+|+.+.+|+|++. +|++.+|+.+++|+|||++.
T Consensus 28 ~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~- 106 (279)
T 3i3n_A 28 RQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIR- 106 (279)
T ss_dssp HHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEE-
T ss_pred hcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcc-
Confidence 3677999999998 999999999999999999999999999999999999621 79999999999999999997
Q ss_pred CChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchhh
Q 004336 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVE 326 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~~ 326 (760)
++.+||.+|+.+|++|+++.|++.|+.||...+ +.+||++++.+|..+++..|...|.+++.++|......+++..
T Consensus 107 i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l-~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~ 182 (279)
T 3i3n_A 107 VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKL-HLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYT 182 (279)
T ss_dssp EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGG
T ss_pred cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcC-CcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhc
Confidence 999999999999999999999999999999998 7899999999999999999999999999999988776666654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=228.20 Aligned_cols=242 Identities=10% Similarity=0.049 Sum_probs=217.6
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC-HHHHHHHHhhhccccccCCc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN-WTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~-~~~A~~~l~l~~~~~~~~d~ 458 (760)
...+.++..+|.++...|++++|+..|++++.++|++. .+++.+|.++...|+ +++|+.++
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~------~a~~~~g~~l~~~g~d~~eAl~~~------------ 155 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY------TVWHFRRVLLKSLQKDLHEEMNYI------------ 155 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCCHHHHHHHH------------
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH------HHHHHHHHHHHHcccCHHHHHHHH------------
Confidence 45677788899999999999999999999999999995 999999999999997 99999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
++++..+|++..+|+++|.++..+|++++|+..|+++++++|++..+|+++|.++...|++++|+..|++++++
T Consensus 156 ------~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 156 ------TAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp ------HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ------HHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhh
Q 004336 539 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD-CGQLDLA-----ADCYSNALKI 612 (760)
Q Consensus 539 ~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~-~g~~~eA-----~~~~~~Al~~ 612 (760)
+|++ ..+|+++|.++.. .|.+++| +.+|++++++
T Consensus 230 ~P~~----------------------------------------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 230 DVRN----------------------------------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp CTTC----------------------------------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred CCCC----------------------------------------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 9999 7888888888888 5554777 5999999998
Q ss_pred cch--HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 004336 613 RHT--RAHQGLARVHFLKN--NKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAV 688 (760)
Q Consensus 613 ~~~--~a~~~La~~~~~~g--~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~ 688 (760)
+|. .+|++++.++...| ++ ++|+..+.++ +.+|++..++..+|.+
T Consensus 270 ~P~~~~a~~~l~~ll~~~g~~~~------------------------------~~a~~~~~~~-~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 270 VPHNESAWNYLKGILQDRGLSKY------------------------------PNLLNQLLDL-QPSHSSPYLIAFLVDI 318 (382)
T ss_dssp STTCHHHHHHHHHHHTTTCGGGC------------------------------HHHHHHHHHH-TTTCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCccch------------------------------HHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence 877 89999999998877 34 3444455555 6788888889999999
Q ss_pred HHHcC---------CHHHHHHHHHHH-HHcCCCcHHHH
Q 004336 689 LMDSH---------KENEAIAELSRA-IAFKADLHLLH 716 (760)
Q Consensus 689 ~~~~g---------~~~eAi~~l~ka-l~~~p~~~~~~ 716 (760)
|.++| .+++|++.|+++ ++.+|....+|
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 99874 258999999999 99999988777
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-21 Score=218.43 Aligned_cols=347 Identities=12% Similarity=-0.034 Sum_probs=286.0
Q ss_pred ChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHh----cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHH--
Q 004336 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLL----RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREH-- 435 (760)
Q Consensus 362 ~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~----~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~-- 435 (760)
.+.+...+++..+. ..+.+++.+|.+|.. .+++++|+.+|+++... +++ .+++.+|.++..
T Consensus 59 ~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~------~a~~~Lg~~y~~g~ 125 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQ-----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP------QAQQNLGVMYHEGN 125 (490)
T ss_dssp HHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH------HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH------HHHHHHHHHHHcCC
Confidence 34444444443322 356789999999999 99999999999999875 453 889999999998
Q ss_pred --ccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcH
Q 004336 436 --IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDH 509 (760)
Q Consensus 436 --~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~Ai~~l~kal~~~p~~~ 509 (760)
.+++++|+.++ +++... +++.+++.+|.+|.. .+++++|+.+|+++++. .++
T Consensus 126 g~~~~~~~A~~~~------------------~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~ 183 (490)
T 2xm6_A 126 GVKVDKAESVKWF------------------RLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNV 183 (490)
T ss_dssp SSCCCHHHHHHHH------------------HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCCCHHHHHHHH------------------HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 89999999999 787664 689999999999998 89999999999999986 579
Q ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--H
Q 004336 510 ERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--G 583 (760)
Q Consensus 510 ~a~~~Lg~i~~~----~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~--~ 583 (760)
.+++.+|.+|.. .+++++|+.+|+++.+.. +..+++.+|.++..... ..+.+++|+..+.++... .
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~g-------~~~~~~~A~~~~~~a~~~~~~ 255 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-DELGQLHLADMYYFGIG-------VTQDYTQSRVLFSQSAEQGNS 255 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSS-------SCCCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCC-------CCCCHHHHHHHHHHHHHCCCH
Confidence 999999999999 999999999999998753 22889999999886211 126788888888887444 8
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhccCcHHHHHH
Q 004336 584 QALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRAHQGLARVHFLK-----NNKTTAYEEMTKLIKKARNNASAYEK 654 (760)
Q Consensus 584 ~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~-----g~~~~A~~~l~~al~~~~~~~~~~~~ 654 (760)
.+++.+|.+|.. .+++++|+.+|+++.+.++..+++.+|.+|... +++++|+.+|+++++..+..+.....
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 335 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLG 335 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 899999999999 999999999999999998889999999999998 99999999999999886533222111
Q ss_pred HH--hcC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHH
Q 004336 655 RS--EYC---DRELTRADLEMVTQLDPLRVYPYRYRAAVLMD----SHKENEAIAELSRAIAFKADLHLLH-LRAAFHEH 724 (760)
Q Consensus 655 ~~--~~~---~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~----~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~ 724 (760)
.. ..| +.++|+..|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+.. ++..+ ..+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHc
Confidence 11 113 789999999999987 678999999999999 899999999999999864 44444 44777777
Q ss_pred ----cCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHh
Q 004336 725 ----TGDVLGALRDCRAALSVDPN---DQEMLELHSRV 755 (760)
Q Consensus 725 ----~g~~~~A~~~~~~aL~l~P~---~~~~l~~~~r~ 755 (760)
.+++++|..+|+++++.+|+ ++.+...+.++
T Consensus 412 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 412 GLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 79999999999999999955 77666555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=225.88 Aligned_cols=262 Identities=14% Similarity=0.096 Sum_probs=211.1
Q ss_pred HHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHH
Q 004336 403 EHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 482 (760)
Q Consensus 403 ~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la 482 (760)
...+..++...|+++.. ....++.+|..+...|++++|+.++ ++++..+|+++.+++.+|
T Consensus 47 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~lg 106 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFK--DWPGAFEEGLKRLKEGDLPVTILFM------------------EAAILQDPGDAEAWQFLG 106 (365)
T ss_dssp ------CCCCCSSCTTT--TCTTHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHhhhcccCCccc--chhHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCcCCHHHHHHHH
Confidence 34555666666665421 1356889999999999999999999 999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCc
Q 004336 483 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSC 561 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~ 561 (760)
.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++++.|++ ..+..++ ..
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----~~------ 176 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK----GS------ 176 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc----cc------
Confidence 999999999999999999999999999999999999999999999999999999998877 2222221 00
Q ss_pred chhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHHHH
Q 004336 562 SSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAYEE 637 (760)
Q Consensus 562 ~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~~~ 637 (760)
...+..+|.++...|++++|+.+|+++++..|. .++..+|.++...|++++|+..
T Consensus 177 ---------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 235 (365)
T 4eqf_A 177 ---------------------PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235 (365)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---------------------hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455677899999999999999999999997654 7899999999999988666655
Q ss_pred HHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 004336 638 MTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL 717 (760)
Q Consensus 638 l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l 717 (760)
+++ +++.+|+++.++..+|.++...|++++|+..|++++...|++...+.
T Consensus 236 ~~~------------------------------al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 285 (365)
T 4eqf_A 236 FNA------------------------------ALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY 285 (365)
T ss_dssp HHH------------------------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHH------------------------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH
Confidence 554 45556677788888999999999999999999999999999987774
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 004336 718 -RAAFHEHTGDVLGALRDCRAALSVDPND 745 (760)
Q Consensus 718 -~a~~~~~~g~~~~A~~~~~~aL~l~P~~ 745 (760)
.+.++...|++++|+..|+++++++|++
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4899999999999999999999999884
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-24 Score=192.37 Aligned_cols=102 Identities=20% Similarity=0.392 Sum_probs=91.6
Q ss_pred CCccceeEEEEecC----eEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCCh
Q 004336 177 GDQVLRNVVFRIHE----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP 252 (760)
Q Consensus 177 ~~~~~~dv~~~~~~----~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~ 252 (760)
+++.+|||+|.|+| ++|+|||.|||++|+||++||+++|.|+. .+|.|+ ++++++|+.+++|+|||++. ++.
T Consensus 4 ~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~--~~~~~~f~~~l~~iYt~~~~-~~~ 79 (109)
T 2vkp_A 4 NNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIP--DVEPAAFLILLKYMYSDEID-LEA 79 (109)
T ss_dssp TCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEET--TSCHHHHHHHHHHHHHCCCC-CCT
T ss_pred cCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeC--CCCHHHHHHHHHHHcCCCcc-CCH
Confidence 46789999999998 89999999999999999999999999999 899997 89999999999999999997 999
Q ss_pred hhHHHHHHHHhhhChHhHHHHHHHHHHhhc
Q 004336 253 NLLLEILIFANKFCCERLKDACDRKLASLV 282 (760)
Q Consensus 253 ~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~ 282 (760)
+||.+|+.+|++|+++.|++.|..||.+.+
T Consensus 80 ~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 80 DTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 999999999999999999999999998753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-22 Score=209.11 Aligned_cols=266 Identities=11% Similarity=0.024 Sum_probs=210.9
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC
Q 004336 394 LLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 473 (760)
Q Consensus 394 l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~ 473 (760)
+..|+|.+|+..++++...+|++. .++...++.++...|+++.|+..+ +. .+|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~-----~e~~~~l~r~yi~~g~~~~al~~~------------------~~---~~~~ 63 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERD-----VERDVFLYRAYLAQRKYGVVLDEI------------------KP---SSAP 63 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHH-----HHHHHHHHHHHHHTTCHHHHHHHS------------------CT---TSCH
T ss_pred HHHHHHHHHHHHHHhcccCCchhh-----HHHHHHHHHHHHHCCCHHHHHHHh------------------cc---cCCh
Confidence 444599999999988877777763 467788889999999999988766 22 2455
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
...++..++..+...|++++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~--------- 129 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS--------- 129 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS---------
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC---------
Confidence 6777888888888899999999999998875 588999999999999999999999988887 666
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCH
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNK 631 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~ 631 (760)
..++..+|.+|...|++++|+..|+++++.+|......++..+....
T Consensus 130 -------------------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~-- 176 (291)
T 3mkr_A 130 -------------------------------LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLA-- 176 (291)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred -------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH--
Confidence 67888888999999999999999999988877754444443322210
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 632 TTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 632 ~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
...|++++|+..|+++++.+|.++.+++++|.++...|++++|+..|++++..+|+
T Consensus 177 ------------------------~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 177 ------------------------AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp ------------------------HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ------------------------hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 01134566667777777778888888888999999999999999999999999999
Q ss_pred cHHHHHH-HHHHHHcCCHHH-HHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 712 LHLLHLR-AAFHEHTGDVLG-ALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 712 ~~~~~l~-a~~~~~~g~~~~-A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
++..+.. +.++...|+..+ +.++++++++++|+|+.+.++..+-.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~ 279 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKEN 279 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9877744 777888898876 56888999999999999888766543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-20 Score=210.11 Aligned_cols=327 Identities=11% Similarity=-0.028 Sum_probs=276.2
Q ss_pred HHHHHHHHhhhHHHh----cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHH----ccCHHHHHHHHhhhccc
Q 004336 381 QRLLAFHQLGCVRLL----RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRW 452 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~----~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~----~g~~~~A~~~l~l~~~~ 452 (760)
..+.+++.+|..|.. .+++++|+.+|++++.. +++ .+++.+|.++.. .+++++|..++
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~------~a~~~Lg~~y~~g~g~~~~~~~A~~~~------ 102 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYT------PAEYVLGLRYMNGEGVPQDYAQAVIWY------ 102 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH------HHHHHHHHHHHHTSSSCCCHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCH------HHHHHHHHHHHcCCCCCCCHHHHHHHH------
Confidence 356788899999998 89999999999999876 453 899999999999 99999999999
Q ss_pred cccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCC
Q 004336 453 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSH 524 (760)
Q Consensus 453 ~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~----~g~ 524 (760)
+++... .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .++
T Consensus 103 ------------~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 103 ------------KKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp ------------HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred ------------HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 888764 588999999999999 89999999999999875 579999999999998 899
Q ss_pred HHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--HHHHHHHHHHHHH----cC
Q 004336 525 CEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--GQALNNLGSVYVD----CG 597 (760)
Q Consensus 525 ~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~--~~a~~~Lg~~y~~----~g 597 (760)
+++|+.+|+++++. .+ .+++.+|.++.... ...+..++|++.+.++... ..+++.+|.+|.. .+
T Consensus 167 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~-------g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 167 YVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGL-------GVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS-------SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCC-------CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCC
Confidence 99999999999976 34 89999999998721 1117788888888887443 8899999999997 89
Q ss_pred CHHHHHHHHHHHHhhcchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhccCcHHHHHHHH----hc-----CCHHHH
Q 004336 598 QLDLAADCYSNALKIRHTRAHQGLARVHFL----KNNKTTAYEEMTKLIKKARNNASAYEKRS----EY-----CDRELT 664 (760)
Q Consensus 598 ~~~eA~~~~~~Al~~~~~~a~~~La~~~~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~-----~~~~~A 664 (760)
++++|+.+|+++++.++..+++.+|.+|.. .+++++|+.+|+++++..... ++..++ .. ++.++|
T Consensus 238 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~--a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSD--GQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHH--HHHHHHHHHHHCBTTBCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHcCCCCCcCCHHHH
Confidence 999999999999999888999999999999 999999999999998765422 222221 22 799999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHH----cCCHHHHHHHHH
Q 004336 665 RADLEMVTQLDPLRVYPYRYRAAVLMDSH---KENEAIAELSRAIAFKADLHLLH-LRAAFHEH----TGDVLGALRDCR 736 (760)
Q Consensus 665 ~~~l~kal~l~p~~~~~~~~La~~~~~~g---~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~----~g~~~~A~~~~~ 736 (760)
+..|+++.+. .++.+++.+|.+|...| ++++|+.+|+++++. +++..+ ..+.+|.. .+++++|+.+|+
T Consensus 316 ~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 316 ISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9999999986 46789999999999877 899999999999987 445444 44777877 799999999999
Q ss_pred HHHhcCCCcHHHHHHHHH
Q 004336 737 AALSVDPNDQEMLELHSR 754 (760)
Q Consensus 737 ~aL~l~P~~~~~l~~~~r 754 (760)
++++.. ++.++..+..
T Consensus 392 ~A~~~~--~~~a~~~Lg~ 407 (490)
T 2xm6_A 392 KAAEQG--LSAAQVQLGE 407 (490)
T ss_dssp HHHHTT--CHHHHHHHHH
T ss_pred HHHhCC--CHHHHHHHHH
Confidence 999864 4555544443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=207.46 Aligned_cols=244 Identities=13% Similarity=0.122 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 425 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 425 a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
.+...|.++...|++++|+..+ ++++..+|.++.+++.+|.++...|++++|+..++++++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~------------------~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~- 65 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVF------------------NKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS- 65 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHH------------------HHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcCHHHHHHHH------------------HHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence 4455566666666666666666 666666666666666666666666666666666666665
Q ss_pred CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhc
Q 004336 505 AASD----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL 580 (760)
Q Consensus 505 ~p~~----~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l 580 (760)
.|.+ ..++..+|.++...|++++|+..|+++++.+|++
T Consensus 66 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-------------------------------------- 107 (272)
T 3u4t_A 66 KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR-------------------------------------- 107 (272)
T ss_dssp TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------------------------------------
T ss_pred ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc--------------------------------------
Confidence 2222 2335666666666666666666666666666655
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhc
Q 004336 581 RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY 658 (760)
Q Consensus 581 ~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~ 658 (760)
..++..+|.+|...|++++|+.+|+++++.+|. .++..+|...+..+
T Consensus 108 --~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~----------------------------- 156 (272)
T 3u4t_A 108 --LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK----------------------------- 156 (272)
T ss_dssp --THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-----------------------------
T ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-----------------------------
Confidence 455556666666666666666666666655443 55555553333333
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC---CCcH-----HHH-HHHHHHHHcC
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK---ENEAIAELSRAIAFK---ADLH-----LLH-LRAAFHEHTG 726 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~---~~eAi~~l~kal~~~---p~~~-----~~~-l~a~~~~~~g 726 (760)
++++|+..++++++.+|++..++..+|.++...|+ +++|+..|+++++.. |+.. ..+ ..+.++...|
T Consensus 157 -~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 -EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp -CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 44666667777777778888888899999999998 999999999999876 5421 222 4488899999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 727 DVLGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 727 ~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
++++|+..|+++++++|+++.+.+.+.++..
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred CHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 9999999999999999999999988777654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-22 Score=204.67 Aligned_cols=246 Identities=12% Similarity=0.086 Sum_probs=212.6
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..++..|..++..|++++|+..|+++++.+|++. .++..+|.++...|++++|+.++
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~----------------- 60 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP------YIYNRRAVCYYELAKYDLAQKDI----------------- 60 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS------TTHHHHHHHHHHTTCHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhhHHHHHHHH-----------------
Confidence 3466778888888899999999999999999996 78999999999999999999999
Q ss_pred HHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 464 IYQMLESDAPK----GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 464 ~~~al~~~p~~----~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.+++. .|.+ +.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+
T Consensus 61 -~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 61 -ETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp -HHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred -HHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence 88888 3333 45699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HH
Q 004336 540 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RA 617 (760)
Q Consensus 540 p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a 617 (760)
|.+ ..++.++|......+++++|+..|+++++..|. .+
T Consensus 139 ~~~----------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 178 (272)
T 3u4t_A 139 TTD----------------------------------------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178 (272)
T ss_dssp CCC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred CCc----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 998 778888894444556999999999999998777 88
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q 004336 618 HQGLARVHFLKNN---KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK 694 (760)
Q Consensus 618 ~~~La~~~~~~g~---~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~ 694 (760)
+..+|.++...|+ +++|+..++++++.....+.... +....++..+|.++...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 179 YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK----------------------DELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGH----------------------HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccch----------------------HHHHHHHHHHHHHHHHcCC
Confidence 9999999999999 88899998888877531110000 0012567889999999999
Q ss_pred HHHHHHHHHHHHHcCCCcHHHH
Q 004336 695 ENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 695 ~~eAi~~l~kal~~~p~~~~~~ 716 (760)
+++|+..|+++++.+|+++.++
T Consensus 237 ~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 237 KVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhcCccHHHHH
Confidence 9999999999999999998776
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=203.23 Aligned_cols=196 Identities=17% Similarity=0.082 Sum_probs=173.0
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+.+++.+|.+++..|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~--------------- 62 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP------EALYWLARTQLKLGLVNPALENG--------------- 62 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH------HHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH---------------
Confidence 345678889999999999999999999999999996 99999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRL-----------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 530 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~ 530 (760)
++++..+|+++.+++.+|.++... |++++|+..|+++++++|+++.++..+|.++...|++++|+.
T Consensus 63 ---~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 63 ---KTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp ---HHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 531 KAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 531 ~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
.|+++++++ ++ +.++.++|.+|...|++++|+..|++++
T Consensus 140 ~~~~al~~~-~~----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 140 SLKQALALE-DT----------------------------------------PEIRSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp HHHHHHHHC-CC----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhcc-cc----------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998 77 7889999999999999999999999999
Q ss_pred hhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 611 KIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLI 642 (760)
Q Consensus 611 ~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al 642 (760)
+.+|. .++.++|.++...|++++|+..++++-
T Consensus 179 ~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 179 EQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHSTTCHHHHHHHHHHHTC---------------
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 98776 899999999999999999999988653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=200.97 Aligned_cols=194 Identities=12% Similarity=0.055 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.++..+|.++...|++++|+..+ ++++..+|+++.+++.+|.++...|++++|+..|+++++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 67 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLF------------------ERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888888888888888888888 888888888888888888888888888888888888888
Q ss_pred hCCCcHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHH
Q 004336 504 HAASDHERLVYEGWILYDT-----------SHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDA 572 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~-----------g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeA 572 (760)
++|+++.++..+|.++... |++++|+..|+++++++|++
T Consensus 68 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------------------------------ 117 (217)
T 2pl2_A 68 RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY------------------------------ 117 (217)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC------------------------------
T ss_pred hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc------------------------------
Confidence 8888888888888888888 88888888888888888888
Q ss_pred HhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHH
Q 004336 573 LKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 650 (760)
Q Consensus 573 l~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~ 650 (760)
..++.++|.++...|++++|+..|+++++++ . .++.++|.++...|++++|+..|+
T Consensus 118 ----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~----------- 175 (217)
T 2pl2_A 118 ----------APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYA----------- 175 (217)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHH-----------
T ss_pred ----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHH-----------
Confidence 7788888888888888888888888888876 4 788888888888888755544444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 651 AYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 706 (760)
Q Consensus 651 ~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal 706 (760)
++++.+|+++.++..+|.++...|++++|+..++++.
T Consensus 176 -------------------~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 176 -------------------KALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -------------------HHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred -------------------HHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 4455566677777777888888888888888887764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-21 Score=198.67 Aligned_cols=226 Identities=15% Similarity=0.080 Sum_probs=171.7
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
..+..+..+|..++..|++++|+..|++++..+ ++. .++..+|.++...|++++|+.++
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~------~~~~~~~~~~~~~~~~~~A~~~~-------------- 61 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI------TYLNNRAAAEYEKGEYETAISTL-------------- 61 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT------HHHHHHHHHHHHTTCHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH------HHHHHHHHHHHHcccHHHHHHHH--------------
Confidence 467888999999999999999999999999999 664 89999999999999999999999
Q ss_pred HHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Q 004336 461 LSVIYQMLESDAPK-------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 533 (760)
Q Consensus 461 l~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~ 533 (760)
.+++..+|.+ +.+++.+|.++...|++++|+..|++++...|. +.++...|++++|+..++
T Consensus 62 ----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 62 ----NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAE 129 (258)
T ss_dssp ----HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHH
Confidence 8888888766 688888999999999999999999999888876 456667777888888888
Q ss_pred HHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 004336 534 ESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 613 (760)
Q Consensus 534 ~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~ 613 (760)
+++..+|.. ..++..+|.++...|++++|+..|+++++..
T Consensus 130 ~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 130 AEAYVNPEK----------------------------------------AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169 (258)
T ss_dssp HHHHCCHHH----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCcch----------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888777666 6677777888888888888888777777655
Q ss_pred ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004336 614 HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 691 (760)
Q Consensus 614 ~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~ 691 (760)
|. .++..+|.++...|++++|+..+++ +++.+|+++.++..+|.++..
T Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------------------------------al~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 170 PEDARGYSNRAAALAKLMSFPEAIADCNK------------------------------AIEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHH------------------------------HHHHCTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHH------------------------------HHHhCHHHHHHHHHHHHHHHH
Confidence 44 5566666666666655444333333 333344444555555666666
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 004336 692 SHKENEAIAELSRAIAFK 709 (760)
Q Consensus 692 ~g~~~eAi~~l~kal~~~ 709 (760)
.|++++|+..++++++..
T Consensus 220 ~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 220 VKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhC
Confidence 666666666666666555
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-24 Score=204.63 Aligned_cols=124 Identities=23% Similarity=0.331 Sum_probs=94.9
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.+||++|+|||.||+++|+||++||+++|.|+...+|.|+ ++++++|+.+++|+|||++. ++.+++.
T Consensus 21 ~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~~~~~l~~~Y~~~~~-~~~~~~~ 97 (145)
T 4eoz_A 21 ENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKAP-NLDKMAD 97 (145)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEEC--SSCHHHHHHHHHHHHHSCCT-TGGGTHH
T ss_pred hCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEec--CCCHHHHHHHHHhhccCccC-CcHHHHH
Confidence 35678999999999999999999999999999999999999999999998 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHH
Q 004336 257 EILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLA 304 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~ 304 (760)
+|+.+|++|+++.|++.|+.||...+ +.+||+.++.+|..+++..|.
T Consensus 98 ~ll~~A~~~~~~~l~~~c~~~l~~~l-~~~n~~~~l~~A~~~~~~~Lk 144 (145)
T 4eoz_A 98 DLLAAADKYALERLKVMCEDALCSNL-SVENAAEILILADLHSADQLK 144 (145)
T ss_dssp HHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCHHHhc
Confidence 99999999999999999999999998 789999999999999987663
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-24 Score=192.84 Aligned_cols=99 Identities=20% Similarity=0.267 Sum_probs=91.0
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||+++|.|+...+|+|+ ++++++|+.+++|+|||++. ++.+|+.
T Consensus 21 ~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~f~~ll~~~Yt~~~~-~~~~~~~ 97 (120)
T 2if5_A 21 TQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEID--FVSAEALTALMDFAYTATLT-VSTANVG 97 (120)
T ss_dssp HTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECC--SSCHHHHHHHHHHHHHSCCC-CCGGGHH
T ss_pred hcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHHHH
Confidence 36779999999999999999999999999999999999999999999997 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHH
Q 004336 257 EILIFANKFCCERLKDACDRKL 278 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l 278 (760)
+|+.+|++|+++.|++.|++||
T Consensus 98 ~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 98 DILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHh
Confidence 9999999999999999999997
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-21 Score=196.75 Aligned_cols=237 Identities=13% Similarity=0.040 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
..++..+|.++...|++++|+.++ .+++..+ .++.+++.+|.++...|++++|+..+++++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~------------------~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 65 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHY------------------NKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV 65 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHH------------------HHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 356666777777777777777777 6666666 666777777777777777777777777777
Q ss_pred HhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhh
Q 004336 503 QHAASD-------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKC 575 (760)
Q Consensus 503 ~~~p~~-------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~ 575 (760)
+..|++ ..++..+|.++...|++++|+..|++++.+.|..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------------------- 112 (258)
T 3uq3_A 66 EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA--------------------------------- 112 (258)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH---------------------------------
T ss_pred HhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh---------------------------------
Confidence 666654 5666777777777777777777777776665543
Q ss_pred hHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHH
Q 004336 576 PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE 653 (760)
Q Consensus 576 ~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~ 653 (760)
.++...|++++|+..+++++..+|. .++..+|.++...|+++
T Consensus 113 ---------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 156 (258)
T 3uq3_A 113 ---------------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP--------------------- 156 (258)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH---------------------
T ss_pred ---------------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH---------------------
Confidence 1233445566777777777665554 56666777777766664
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH-HHHHHHHcCCHHHHH
Q 004336 654 KRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGAL 732 (760)
Q Consensus 654 ~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l-~a~~~~~~g~~~~A~ 732 (760)
+|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|++...+. .+.++...|++++|+
T Consensus 157 ---------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 157 ---------NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp ---------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4555555556666777788899999999999999999999999999999987774 499999999999999
Q ss_pred HHHHHHHhcC------CCcHHHHHHHHHhh
Q 004336 733 RDCRAALSVD------PNDQEMLELHSRVY 756 (760)
Q Consensus 733 ~~~~~aL~l~------P~~~~~l~~~~r~~ 756 (760)
..|+++++++ |++.++...+.++.
T Consensus 228 ~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 228 ETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 9999999999 99999998888764
|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-23 Score=223.16 Aligned_cols=140 Identities=22% Similarity=0.314 Sum_probs=125.6
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|+|++|+|||.|||++|+||++||.++|.|+...+|+|+ ++++++++.+++|+|||++. ++.++++
T Consensus 170 ~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~f~~~L~~iYt~~~~-~~~~~~~ 246 (312)
T 3hqi_A 170 ENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKAP-NLDKMAD 246 (312)
T ss_dssp HTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEEC--SSCHHHHHHHHHHHHHSCCT-THHHHHH
T ss_pred hCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEec--CCCHHHHHHHHHhhcCCCCC-ChHHHHH
Confidence 46778999999999999999999999999999999999999999999997 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccC
Q 004336 257 EILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLN 320 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~ 320 (760)
+||.+|++|+++.|+..|+.||...+ +..++..++.+|..+++..|...|++++..++...+.
T Consensus 247 ~ll~~A~~~~~~~l~~~c~~~l~~~~-~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~ 309 (312)
T 3hqi_A 247 DLLAAADKYALERLKVMCEDALCSNL-SVENAAEILILADLHSADQLKTQAVDFINYHATDVLE 309 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988 6899999999999999999999999999998877654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-21 Score=212.41 Aligned_cols=290 Identities=16% Similarity=0.084 Sum_probs=233.4
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+..++.+|..++..|++++|+..|++++...|+++. ....++..+|.++...|++++|+.++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~------------- 109 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR--TLSAIYSQLGNAYFYLGDYNKAMQYH------------- 109 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH--HHHHHHHHHHHHHHHHTCHHHHHHHH-------------
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh--HHHHHHHHHHHHHHHCCCHHHHHHHH-------------
Confidence 456677788899999999999999999999999999752 12257889999999999999999999
Q ss_pred cHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCC---
Q 004336 460 SLSVIYQMLES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH------AASDHERLVYEGWILYDTSH--- 524 (760)
Q Consensus 460 sl~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~------~p~~~~a~~~Lg~i~~~~g~--- 524 (760)
++++.. .|....+++.+|.+|...|++++|+..|+++++. .|....++..+|.++...|+
T Consensus 110 -----~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (411)
T 4a1s_A 110 -----KHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLG 184 (411)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccc
Confidence 777766 5777889999999999999999999999999988 55667789999999999999
Q ss_pred --------------HHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHH
Q 004336 525 --------------CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLG 590 (760)
Q Consensus 525 --------------~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg 590 (760)
+++|+..+++++++.+.. + .......++.++|
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~------------------------~----------~~~~~~~~~~~la 230 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDL------------------------G----------DRGAQGRACGNLG 230 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH------------------------T----------CHHHHHHHHHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHc------------------------C----------CHHHHHHHHHHHH
Confidence 777777777776543221 0 0001157889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcch--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHH
Q 004336 591 SVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRE 662 (760)
Q Consensus 591 ~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~ 662 (760)
.+|...|++++|+.+|+++++..+. .++..+|.+|...|++++|+..++++++..+......
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------- 300 (411)
T 4a1s_A 231 NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE---------- 300 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH----------
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH----------
Confidence 9999999999999999999986443 4889999999999999999999998887766321110
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHH-HHHHHHHHcCCHHHHHHHH
Q 004336 663 LTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH------LLH-LRAAFHEHTGDVLGALRDC 735 (760)
Q Consensus 663 ~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~------~~~-l~a~~~~~~g~~~~A~~~~ 735 (760)
....++..+|.++...|++++|+.++++++...++.. ..+ ..+.++...|++++|+..|
T Consensus 301 --------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 301 --------------VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp --------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1135677889999999999999999999988754331 122 4488888889999999999
Q ss_pred HHHHhcCCCcHH
Q 004336 736 RAALSVDPNDQE 747 (760)
Q Consensus 736 ~~aL~l~P~~~~ 747 (760)
++++++.+...+
T Consensus 367 ~~al~~~~~~~~ 378 (411)
T 4a1s_A 367 EQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHCCHHHH
T ss_pred HHHHHHHhhccc
Confidence 999988776544
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-23 Score=191.95 Aligned_cols=100 Identities=22% Similarity=0.403 Sum_probs=95.8
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEe-cCCCCCHHHHHHHHhccccCccCCCChhhH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDL-SENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~-~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v 255 (760)
.++.+|||+|.|+|++|+|||.|||++|+||++||+++|.| ...+|+| + ++++++|+.+++|+|||++. ++.+||
T Consensus 25 ~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~--~~~~~~f~~ll~~~Ytg~~~-~~~~~~ 100 (127)
T 1r29_A 25 SRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDP--EINPEGFNILLDFMYTSRLN-LREGNI 100 (127)
T ss_dssp HTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCT--TSCHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred hcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCC--CCCHHHHHHHHHHHcCCCcC-cCHHHH
Confidence 46789999999999999999999999999999999999999 7789999 6 89999999999999999997 999999
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHHh
Q 004336 256 LEILIFANKFCCERLKDACDRKLAS 280 (760)
Q Consensus 256 ~~ll~~a~~~~~~~~~~~c~~~l~~ 280 (760)
.+|+.+|++|+++.|++.|+.||.+
T Consensus 101 ~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 101 MAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999999975
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-21 Score=203.21 Aligned_cols=256 Identities=13% Similarity=0.072 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..++.+|..+...|++++|+.++ ++++..+|++..+++.+|.++...|++++|+..|+++++
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAF------------------EAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56788999999999999999999 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
.+|.+..++..+|.++...|++++|+..+++++...|.+ ..+..+......
T Consensus 84 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 135 (327)
T 3cv0_A 84 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD---------------------------- 135 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------
T ss_pred cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHH----------------------------
Confidence 999999999999999999999999999999999999988 333322211111
Q ss_pred HHHHHHH-HH-HHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhc
Q 004336 583 GQALNNL-GS-VYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY 658 (760)
Q Consensus 583 ~~a~~~L-g~-~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~ 658 (760)
......+ |. ++...|++++|+..|+++++..|. .++..+|.++...|++++|+..++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~----------------- 198 (327)
T 3cv0_A 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA----------------- 198 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH-----------------
Confidence 1122244 44 488889999999999999997765 88999999999999886666666554
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRA 737 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~ 737 (760)
++.+|+++.++..+|.++...|++++|+..+++++...|++...+ ..+.++...|++++|+..+++
T Consensus 199 -------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 199 -------------VELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265 (327)
T ss_dssp -------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 455667777888899999999999999999999999999988776 449999999999999999999
Q ss_pred HHhcCCC------------cHHHHHHHHHh
Q 004336 738 ALSVDPN------------DQEMLELHSRV 755 (760)
Q Consensus 738 aL~l~P~------------~~~~l~~~~r~ 755 (760)
+++.+|+ ++.++..+.++
T Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 266 AIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 9999999 67766555443
|
| >2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-23 Score=197.11 Aligned_cols=101 Identities=20% Similarity=0.247 Sum_probs=91.1
Q ss_pred CCCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCC--CccceeEecCCCCCHHHHHHHHhccccCccCCCChh
Q 004336 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFME--SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN 253 (760)
Q Consensus 176 ~~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e--~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~ 253 (760)
-.++.+|||+|+|+|++|+|||.|||++|+||++||+++|.| +...+|.|+ ++++++++.+++|+|||++. ++.+
T Consensus 42 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~--~v~~~~f~~lL~fiYtg~~~-i~~~ 118 (144)
T 2ppi_A 42 REESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE--GISVMVMREILDYIFSGQIR-LNED 118 (144)
T ss_dssp TC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECC--SSCHHHHHHHHHHHTTSCCC-CCTT
T ss_pred HhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeC--CCCHHHHHHHHHHHhCCCCC-CCHH
Confidence 357889999999999999999999999999999999999986 677899997 89999999999999999997 9999
Q ss_pred hHHHHHHHHhhhChHhHHHHHHHHHH
Q 004336 254 LLLEILIFANKFCCERLKDACDRKLA 279 (760)
Q Consensus 254 ~v~~ll~~a~~~~~~~~~~~c~~~l~ 279 (760)
||.+||.+|++|+++.|++.|++||.
T Consensus 119 ~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 119 TIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 99999999999999999999999873
|
| >2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-23 Score=196.66 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=96.2
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||++++.|+ .+|.++ .+|++++|+.+++|+|||++. ++.+||.
T Consensus 32 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~-~~v~~~~~~~lL~~~Ytg~~~-i~~~~v~ 107 (138)
T 2z8h_A 32 KKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLP-EEVTVKGFEPLIQFAYTAKLI-LSKDNVD 107 (138)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECC-TTSCHHHHHHHHHHHHHSCCC-CCTTTHH
T ss_pred hhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeC-CCCCHHHHHHHHHHhcCCCcc-cCHHHHH
Confidence 466799999999999999999999999999999999999875 478886 389999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhhcC
Q 004336 257 EILIFANKFCCERLKDACDRKLASLVA 283 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~~~ 283 (760)
+||.+|++|+++.|++.|+.||...+.
T Consensus 108 ~ll~~A~~~~i~~L~~~C~~~l~~~l~ 134 (138)
T 2z8h_A 108 EVCRCVEFLSVHNIEESCFQFLKFKFL 134 (138)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHTTCCCS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998874
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=211.46 Aligned_cols=273 Identities=15% Similarity=0.020 Sum_probs=196.5
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+.++...|..++..|++++|+..|++++...|+++. ....++..+|.++...|++++|+.++
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~--------------- 70 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK--TLSAIYSQLGNAYFYLHDYAKALEYH--------------- 70 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHhcCHHHHHHHH---------------
Confidence 3456777888888889999999999999999998752 12367889999999999999999999
Q ss_pred HHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCC-----
Q 004336 462 SVIYQMLES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSH----- 524 (760)
Q Consensus 462 ~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~----- 524 (760)
++++.. .|..+.++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|+
T Consensus 71 ---~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 147 (406)
T 3sf4_A 71 ---HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 147 (406)
T ss_dssp ---HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred ---HHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccc
Confidence 666655 35567899999999999999999999999999886543 4589999999999999
Q ss_pred ---------------HHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHH
Q 004336 525 ---------------CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 589 (760)
Q Consensus 525 ---------------~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~L 589 (760)
+++|+..+++++.+.+.. + .......++.++
T Consensus 148 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~------------------------~----------~~~~~~~~~~~l 193 (406)
T 3sf4_A 148 GPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL------------------------G----------DRAAQGRAFGNL 193 (406)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHT------------------------T----------CHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc------------------------c----------CcHHHHHHHHHH
Confidence 888888888877652111 0 000015677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcch--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc------HHHHHHH
Q 004336 590 GSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN------ASAYEKR 655 (760)
Q Consensus 590 g~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~------~~~~~~~ 655 (760)
|.+|...|++++|+.+|+++++..+. .++.++|.++...|++++|+..++++++..+.. ...+..+
T Consensus 194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 273 (406)
T 3sf4_A 194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 273 (406)
T ss_dssp HHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHH
Confidence 88888888888888888888875322 477888888888888888888888887766532 1111111
Q ss_pred ----HhcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 656 ----SEYCDRELTRADLEMVTQLDPLR------VYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 656 ----~~~~~~~~A~~~l~kal~l~p~~------~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
...|++++|+..+++++++.+.. ..++..+|.++...|++++|+..+++++.+
T Consensus 274 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 274 GNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12244445555554444443222 345555666666666666666666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-21 Score=203.79 Aligned_cols=286 Identities=15% Similarity=0.038 Sum_probs=224.6
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
...++..|..++..|++++|+..|+++++..|+++. ....++..+|.++...|++++|+.++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~---------------- 66 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK--TLSAIYSQLGNAYFYLHDYAKALEYH---------------- 66 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHH--HHHHHHHHHHHHHHHcCCHHHHHHHH----------------
Confidence 345667788888888999999999999999998742 22367889999999999999999999
Q ss_pred HHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCC------
Q 004336 463 VIYQMLES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSH------ 524 (760)
Q Consensus 463 ~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~------ 524 (760)
.+++.. .|..+.++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|+
T Consensus 67 --~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (338)
T 3ro2_A 67 --HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPG 144 (338)
T ss_dssp --HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSS
T ss_pred --HHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccch
Confidence 666554 45567889999999999999999999999999875533 3488999999999999
Q ss_pred --------------HHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHH
Q 004336 525 --------------CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLG 590 (760)
Q Consensus 525 --------------~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg 590 (760)
+++|+..+++++.+.+.. + .......++..+|
T Consensus 145 ~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~------------------------~----------~~~~~~~~~~~l~ 190 (338)
T 3ro2_A 145 PQDTGEFPEDVRNALQAAVDLYEENLSLVTAL------------------------G----------DRAAQGRAFGNLG 190 (338)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHHH------------------------T----------CHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc------------------------C----------CHHHHHHHHHHHH
Confidence 778877777776542211 0 0001157889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcch--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHH
Q 004336 591 SVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRE 662 (760)
Q Consensus 591 ~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~ 662 (760)
.++...|++++|+.+|+++++..+. .++..+|.++...|++++|+..++++++..+......
T Consensus 191 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------- 260 (338)
T 3ro2_A 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA---------- 260 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----------
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh----------
Confidence 9999999999999999999985332 4899999999999999999999998887765321110
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHH-HHHHHHHHcCCHHHHHHHH
Q 004336 663 LTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH------LLH-LRAAFHEHTGDVLGALRDC 735 (760)
Q Consensus 663 ~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~------~~~-l~a~~~~~~g~~~~A~~~~ 735 (760)
....++..+|.++...|++++|+..+++++...+... ..+ ..+.++...|++++|...+
T Consensus 261 --------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 261 --------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp --------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 1135677889999999999999999999998754331 122 4488888899999999999
Q ss_pred HHHHhcCCCcH
Q 004336 736 RAALSVDPNDQ 746 (760)
Q Consensus 736 ~~aL~l~P~~~ 746 (760)
++++++.++..
T Consensus 327 ~~a~~~~~~~~ 337 (338)
T 3ro2_A 327 EKHLEISREVG 337 (338)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHHHhhc
Confidence 99999887653
|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-23 Score=190.01 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=90.6
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||++++ ..+|+|+ ++++++++.+++|+|||++. ++.+||.
T Consensus 20 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~--~~~~~~f~~ll~~iYtg~~~-~~~~~v~ 92 (119)
T 3b84_A 20 EKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLP--AGFAEIFGLLLDFFYTGHLA-LTSGNRD 92 (119)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEEC--GGGHHHHHHHHHHHHHSCCC-CCTTTHH
T ss_pred hcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHHHH
Confidence 357799999999999999999999999999999999987 5689997 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHh
Q 004336 257 EILIFANKFCCERLKDACDRKLAS 280 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~ 280 (760)
+|+.+|++|+++.|++.|+.||.+
T Consensus 93 ~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 93 QVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999999999999999999875
|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-23 Score=192.47 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=88.7
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|+|+|++|+|||.|||++|+||++||++++ ..+|.|+ ++++++|+.+++|+|||++. ++.+||.
T Consensus 21 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~--~~~~~~f~~lL~fiYtg~~~-i~~~~v~ 93 (135)
T 2yy9_A 21 EKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLP--AGFAEIFGLLLDFFYTGHLA-LTSGNRD 93 (135)
T ss_dssp HTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEEC--GGGHHHHHHHHHHHHHSCCC-CCTTTHH
T ss_pred hcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeC--CCCHHHHHHHHHHHhCCCCC-CCHHHHH
Confidence 467899999999999999999999999999999999987 5689997 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhhc
Q 004336 257 EILIFANKFCCERLKDACDRKLASLV 282 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~~ 282 (760)
+|+.+|++|+++.|++.|+.||...+
T Consensus 94 ~ll~~A~~l~i~~L~~~C~~~l~~~l 119 (135)
T 2yy9_A 94 QVLLAAKELRVPEAVELCQSFQPQTS 119 (135)
T ss_dssp HHHHHHHHTTCHHHHHHHHHCCC---
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999998765
|
| >1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=184.61 Aligned_cols=97 Identities=21% Similarity=0.332 Sum_probs=91.2
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||+++ ..+|+|+ ++++++++.+++|+|||++. ++.+|+.
T Consensus 24 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~--~~~~~~f~~ll~~~Ytg~~~-~~~~~~~ 95 (121)
T 1buo_A 24 LAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLD--FLSPKTFQQILEYAYTATLQ-AKAEDLD 95 (121)
T ss_dssp HHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC--SSCHHHHHHHHHHHHHSCCC-CCGGGHH
T ss_pred hcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeC--CCCHHHHHHHHHhhcCCCcC-CCHHHHH
Confidence 36779999999999999999999999999999999874 4589997 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhh
Q 004336 257 EILIFANKFCCERLKDACDRKLASL 281 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~ 281 (760)
+++.+|++|+++.|++.|+.||.+.
T Consensus 96 ~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 96 DLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999764
|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=182.92 Aligned_cols=97 Identities=22% Similarity=0.323 Sum_probs=89.5
Q ss_pred CccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHH
Q 004336 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLE 257 (760)
Q Consensus 178 ~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~ 257 (760)
++.+|||+|+|||++|+|||.|||++|+||++||+++ ...+|.|+-.++++++|+.+++|+|||++. ++.+||.+
T Consensus 19 ~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~-~~~~~v~~ 93 (116)
T 2vpk_A 19 AGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLN-LDSWNVKE 93 (116)
T ss_dssp HTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCC-CCTTTHHH
T ss_pred cCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcc-cCHHHHHH
Confidence 5679999999999999999999999999999999987 355777752279999999999999999997 99999999
Q ss_pred HHHHHhhhChHhHHHHHHHHHH
Q 004336 258 ILIFANKFCCERLKDACDRKLA 279 (760)
Q Consensus 258 ll~~a~~~~~~~~~~~c~~~l~ 279 (760)
|+.+|++|+++.|++.|+.||.
T Consensus 94 ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 94 IHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999985
|
| >2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-23 Score=192.20 Aligned_cols=99 Identities=18% Similarity=0.286 Sum_probs=89.4
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||+++|.|+ .+|.++ ++|++++++.+++|+|||++. ++.+||.
T Consensus 25 ~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~-~~v~~~~f~~lL~~iYtg~~~-i~~~~v~ 100 (124)
T 2ihc_A 25 KKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLP-EEVTVKGFEPLIQFAYTAKLI-LSKENVD 100 (124)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECC-TTSCHHHHHHHHHHHHHSEEE-EETTTHH
T ss_pred hcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeec-CCcCHHHHHHHHHHhcCCCcc-cCHHHHH
Confidence 356799999999999999999999999999999999999876 478886 389999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHH
Q 004336 257 EILIFANKFCCERLKDACDRKLA 279 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~ 279 (760)
+|+.+|++|+++.|++.|++||.
T Consensus 101 ~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 101 EVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHCCHHHHHHHHHHHh
Confidence 99999999999999999999874
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=182.64 Aligned_cols=177 Identities=18% Similarity=0.178 Sum_probs=165.9
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+..|+.+|.++..+|+|++|+..|+++++++|++. .++..+|.++...|++++|+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~a~~~~--------------- 62 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV------ETLLKLGKTYMDIGLPNDAIESL--------------- 62 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHH---------------
Confidence 356788999999999999999999999999999995 89999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.+++...|.+..++..+|.++...++++.|+..+++++...|.+..++..+|.++...|++++|+..|+++++++|+
T Consensus 63 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~ 139 (184)
T 3vtx_A 63 ---KKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139 (184)
T ss_dssp ---HHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---HHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHH
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGL 621 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~L 621 (760)
+ +.++.++|.+|...|++++|+.+|+++++++|..+.+++
T Consensus 140 ~----------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~l 179 (184)
T 3vtx_A 140 F----------------------------------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYEL 179 (184)
T ss_dssp C----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCS
T ss_pred h----------------------------------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHH
Confidence 9 789999999999999999999999999999988766655
Q ss_pred H
Q 004336 622 A 622 (760)
Q Consensus 622 a 622 (760)
|
T Consensus 180 a 180 (184)
T 3vtx_A 180 A 180 (184)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-21 Score=198.52 Aligned_cols=258 Identities=10% Similarity=-0.065 Sum_probs=204.7
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHH
Q 004336 389 LGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 468 (760)
Q Consensus 389 lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al 468 (760)
++......|++++|+..|++++...|..+ .....++..+|.++...|++++|+.++ ++++
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~------------------~~al 70 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTD--DERAQLLYERGVLYDSLGLRALARNDF------------------SQAL 70 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHH------------------HHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccC--chhHHHHHHHHHHHHHcccHHHHHHHH------------------HHHH
Confidence 34444556799999999999999854332 122478899999999999999999999 9999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHH
Q 004336 469 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 548 (760)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~l 548 (760)
..+|.++.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++++|++
T Consensus 71 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------ 144 (275)
T 1xnf_A 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND------ 144 (275)
T ss_dssp HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred HcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-HHHHHHHHHHHH
Q 004336 549 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFL 627 (760)
Q Consensus 549 a~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-~a~~~La~~~~~ 627 (760)
......++ +....|++++|+..|++++...+. .....++.++..
T Consensus 145 ----------------------------------~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 1xnf_A 145 ----------------------------------PFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 189 (275)
T ss_dssp ----------------------------------HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTT
T ss_pred ----------------------------------hHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 22222222 235568999999999998886665 344557777888
Q ss_pred cCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 628 KNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 628 ~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
.++.++|+..+++++...|.. .|.++..+..+|.++...|++++|+..|++++.
T Consensus 190 ~~~~~~a~~~~~~~~~~~~~~--------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 190 NISEQTLMERLKADATDNTSL--------------------------AEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp SSCHHHHHHHHHHHCCSHHHH--------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHhcccccc--------------------------cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888877877777766554411 122346788899999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 708 FKADLHLLHLRAAFHEHTGDVLGALRDC 735 (760)
Q Consensus 708 ~~p~~~~~~l~a~~~~~~g~~~~A~~~~ 735 (760)
..|++...+ +.++..+|++++|++.|
T Consensus 244 ~~p~~~~~~--~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 NNVHNFVEH--RYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCCTTCHHH--HHHHHHHHHHHHC----
T ss_pred CCchhHHHH--HHHHHHHHHHHhhHHHH
Confidence 999765433 55666778999998887
|
| >3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-23 Score=190.27 Aligned_cols=98 Identities=21% Similarity=0.295 Sum_probs=91.6
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||++++.| ..+|.+++ ++++++|+.+++|+|||++. ++.+||.
T Consensus 28 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~-~~~~~~f~~~l~~iYtg~~~-~~~~~v~ 103 (125)
T 3ohu_A 28 KKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPE-EVTARGFGPLLQFAYTAKLL-LSRENIR 103 (125)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCT-TCCHHHHHHHHHHHTTSEEE-ECTTTHH
T ss_pred hcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCC-CCCHHHHHHHHHhHcCCceE-ECHHHHH
Confidence 46789999999999999999999999999999999999987 66899982 49999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHH
Q 004336 257 EILIFANKFCCERLKDACDRKL 278 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l 278 (760)
+|+.+|++|+++.|++.|++||
T Consensus 104 ~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 104 EVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp HHHHHHHHHTBSSCTTSSCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHhC
Confidence 9999999999999999998764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-19 Score=185.30 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=65.6
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHH----ccCHHHHHHHHhhhccccccCCc
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~----~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
+.+++.+|.++...|++++|+.+|+++++ |+++ .++..+|.++.. .+++++|+.++
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~------~a~~~lg~~~~~g~~~~~~~~~A~~~~------------ 65 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKEN------SGCFNLGVLYYQGQGVEKNLKKAASFY------------ 65 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCH------HHHHHHHHHHHHTSSSCCCHHHHHHHH------------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCH------HHHHHHHHHHHcCCCcCCCHHHHHHHH------------
Confidence 34445555555555555555555555554 3332 455555555555 55555555555
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLR 530 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~ 530 (760)
++++..+ ++.+++.+|.+|.. .+++++|+..|+++++.+ ++.++..+|.+|.. .|++++|+.
T Consensus 66 ------~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~ 135 (273)
T 1ouv_A 66 ------AKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVE 135 (273)
T ss_dssp ------HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ------HHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHH
Confidence 4444442 45555555555555 555555555555555442 44555555555555 555555555
Q ss_pred HHHHHHhh
Q 004336 531 KAEESIQM 538 (760)
Q Consensus 531 ~~~~al~l 538 (760)
+|+++++.
T Consensus 136 ~~~~a~~~ 143 (273)
T 1ouv_A 136 YFTKACDL 143 (273)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 55555543
|
| >2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-22 Score=183.37 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=88.5
Q ss_pred CccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHH
Q 004336 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLE 257 (760)
Q Consensus 178 ~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~ 257 (760)
++.+|||+|.+||++|+|||.|||++|+||++||++ ...+|.++ ++++++|+.+++|+|||++. ++.+||.+
T Consensus 24 ~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~-----~~~~i~l~--~~~~~~f~~ll~~~Ytg~~~-i~~~~~~~ 95 (119)
T 2q81_A 24 LGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD-----QKDVVHLD--ISNAAGLGQVLEFMYTAKLS-LSPENVDD 95 (119)
T ss_dssp HTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH-----CCSGGGGG--GCCHHHHHHHHHHHHHSCCC-CCTTTHHH
T ss_pred cCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC-----CCCEEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHHHHH
Confidence 577999999999999999999999999999999997 34578887 79999999999999999997 99999999
Q ss_pred HHHHHhhhChHhHHHHHHHHHH
Q 004336 258 ILIFANKFCCERLKDACDRKLA 279 (760)
Q Consensus 258 ll~~a~~~~~~~~~~~c~~~l~ 279 (760)
|+.+|++|+++.|++.|++||.
T Consensus 96 ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 96 VLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999985
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-19 Score=184.93 Aligned_cols=227 Identities=12% Similarity=0.077 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQ 499 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~Ai~~l~ 499 (760)
.+++.+|.++...|++++|+.++ ++++. |+++.+++.+|.+|.. .+++++|+.+|+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~------------------~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 66 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYF------------------EKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYA 66 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH------------------HHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHH
Confidence 77788888888888888888888 77776 6777888888888888 888888888888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhh
Q 004336 500 LARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKC 575 (760)
Q Consensus 500 kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~ 575 (760)
++++.+ ++.+++.+|.++.. .|++++|+.+|+++++.+ +
T Consensus 67 ~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~--------------------------------- 109 (273)
T 1ouv_A 67 KACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y--------------------------------- 109 (273)
T ss_dssp HHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------------------------------
T ss_pred HHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C---------------------------------
Confidence 888774 67888888888888 888888888888887652 3
Q ss_pred hHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhccC
Q 004336 576 PSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRAHQGLARVHFL----KNNKTTAYEEMTKLIKKARN 647 (760)
Q Consensus 576 ~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~----~g~~~~A~~~l~~al~~~~~ 647 (760)
..+++++|.+|.. .+++++|+.+|+++++.++..++..+|.+|.. .+++++|+.+|+++++.
T Consensus 110 -------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--- 179 (273)
T 1ouv_A 110 -------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--- 179 (273)
T ss_dssp -------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred -------ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---
Confidence 5678888888888 88888888888888888877888888888887 77776666666655433
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 004336 648 NASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD----SHKENEAIAELSRAIAFKADLHLLHLRAAFHE 723 (760)
Q Consensus 648 ~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~----~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~ 723 (760)
.++.++..+|.+|.. .+++++|+..|+++++..| .......+.++.
T Consensus 180 -----------------------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~ 229 (273)
T 1ouv_A 180 -----------------------------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQY 229 (273)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred -----------------------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 235677888999999 9999999999999998866 223334477777
Q ss_pred H----cCCHHHHHHHHHHHHhcCCCcHH
Q 004336 724 H----TGDVLGALRDCRAALSVDPNDQE 747 (760)
Q Consensus 724 ~----~g~~~~A~~~~~~aL~l~P~~~~ 747 (760)
. .+++++|+.+|+++++.+|+++.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 7 79999999999999999887654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=187.82 Aligned_cols=215 Identities=14% Similarity=0.062 Sum_probs=172.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 553 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~ 553 (760)
.+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA----------- 90 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-----------
Confidence 467889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCH
Q 004336 554 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNK 631 (760)
Q Consensus 554 ~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~ 631 (760)
..++..+|.++...|++++|+..|+++++..|. .++..+|.++...|++
T Consensus 91 -----------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 91 -----------------------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP 141 (243)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCH
T ss_pred -----------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 788899999999999999999999999997665 8899999999999998
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 004336 632 TTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711 (760)
Q Consensus 632 ~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~ 711 (760)
++|+..+++++ +.+|.+...+..+|.++...|++++|+..+++++...|+
T Consensus 142 ~~A~~~~~~~~------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 142 KLALPYLQRAV------------------------------ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHHHHHH------------------------------HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHH------------------------------HhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 66666666554 445566677888899999999999999999999999999
Q ss_pred cHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcc
Q 004336 712 LHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSH 758 (760)
Q Consensus 712 ~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~~ 758 (760)
+...+ ..+.++...|++++|+..++++++++|+++.++..+.++...
T Consensus 192 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 88776 448899999999999999999999999999998888777654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-19 Score=177.65 Aligned_cols=213 Identities=11% Similarity=-0.022 Sum_probs=189.9
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
..|.++.+++.+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..+++++...|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------- 75 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS------- 75 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------
Confidence 3577889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hcch--HHHHHHHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-GQLDLAADCYSNALK--IRHT--RAHQGLARV 624 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~-g~~~eA~~~~~~Al~--~~~~--~a~~~La~~ 624 (760)
..++..+|.++... |++++|+..|+++++ ..+. .++..+|.+
T Consensus 76 ---------------------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 76 ---------------------------------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp ---------------------------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred ---------------------------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 77889999999999 999999999999998 4443 789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 625 HFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSR 704 (760)
Q Consensus 625 ~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~k 704 (760)
+...|++++|+..++++ ++.+|.++..+..+|.++...|++++|+..+++
T Consensus 123 ~~~~~~~~~A~~~~~~~------------------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRS------------------------------LAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHTTCHHHHHHHHHHH------------------------------HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH------------------------------HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999986666666655 445566677788889999999999999999999
Q ss_pred HHHcCC-CcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004336 705 AIAFKA-DLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 752 (760)
Q Consensus 705 al~~~p-~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~ 752 (760)
++...| ++...+ ..+.++...|++++|...++.+++.+|+++.+...+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 173 YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999 887665 558888888999999999999999999999887665
|
| >3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-22 Score=180.25 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=84.9
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|+|||++|+|||.|||++|+||++ ...+|.|+ ||++++|+.+++|+|||++. ++.+||+
T Consensus 26 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~--~v~~~~f~~ll~fiYtg~~~-i~~~~v~ 93 (119)
T 3m5b_A 26 LRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGE--GISPSTFAQLLNFVYGESVE-LQPGELR 93 (119)
T ss_dssp HTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCS--SCCHHHHHHHHHHHTTCCEE-ECGGGHH
T ss_pred hcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeC--CCCHHHHHHHHHHHcCCCcC-cCHHHHH
Confidence 467899999999999999999999999999996 34679997 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHh
Q 004336 257 EILIFANKFCCERLKDACDRKLAS 280 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~ 280 (760)
+||.+|++|+++.|++.|++++..
T Consensus 94 ~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 94 PLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 999999999999999999998764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-18 Score=199.12 Aligned_cols=345 Identities=10% Similarity=-0.013 Sum_probs=252.7
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
..+|..++. +...|++++|...|+++++.+|.+. ..|..++......|++++|...+
T Consensus 13 ~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~------~~w~~~~~~~~~~~~~~~a~~~~---------------- 69 (530)
T 2ooe_A 13 LDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSG------RFWKLYIEAEIKAKNYDKVEKLF---------------- 69 (530)
T ss_dssp HHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCH------HHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHhcCCHHHHHHHH----------------
Confidence 445555555 3556788888888888888888885 78888888888888888888888
Q ss_pred HHHHHHHhCCCcHHHHHHHHH-HHHHcCCHHHHHH----HHHHHHHh---CCCcHHHHHHHHHHHHH---------CCCH
Q 004336 463 VIYQMLESDAPKGVLYFRQSL-LLLRLNCPEAAMR----SLQLARQH---AASDHERLVYEGWILYD---------TSHC 525 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~Ai~----~l~kal~~---~p~~~~a~~~Lg~i~~~---------~g~~ 525 (760)
++++...| +..+|..++. .....|++++|.+ .|++++.. +|.....|..++..... .|++
T Consensus 70 --~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 70 --QRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp --HHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred --HHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 88888888 5677777775 3345677766655 77777654 45667777777776654 6788
Q ss_pred HHHHHHHHHHHhhcCCh---HHHHHHHHH--------------------------HHc-----ccC-------CCCcc--
Q 004336 526 EEGLRKAEESIQMKRSF---EAFFLKAYA--------------------------LAD-----SSQ-------DSSCS-- 562 (760)
Q Consensus 526 eeAl~~~~~al~l~p~~---~a~~~la~~--------------------------l~~-----~~~-------~~~~~-- 562 (760)
++|...|+++++ .|.. ..|...... +.. ... .+...
T Consensus 147 ~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 147 TAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 888888888888 4553 222111110 000 000 00000
Q ss_pred -hhhhh---------------------HHHHHHhhhHhhccH----HHHHHHHHHHHHH-------cCCHH-------HH
Q 004336 563 -STVVS---------------------LLEDALKCPSDRLRK----GQALNNLGSVYVD-------CGQLD-------LA 602 (760)
Q Consensus 563 -~~~~~---------------------~leeAl~~~~~~l~~----~~a~~~Lg~~y~~-------~g~~~-------eA 602 (760)
..... ...+++..|++++.. +.+|..+|..+.. .|+++ +|
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 00000 112445566666432 8899999999886 79987 99
Q ss_pred HHHHHHHHh-hcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH-HHHHHHH----hcCCHHHHHHHHHHHHhh
Q 004336 603 ADCYSNALK-IRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA-SAYEKRS----EYCDRELTRADLEMVTQL 674 (760)
Q Consensus 603 ~~~~~~Al~-~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~-~~~~~~~----~~~~~~~A~~~l~kal~l 674 (760)
+..|++|++ ..|. .+|..+|.++...|++++|...|+++++..|.+. .++...+ ..|+.++|...|+++++.
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999997 5554 8999999999999999999999999999998764 4555443 357889999999999999
Q ss_pred CCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHH----H
Q 004336 675 DPLRVYPYRYRAAV-LMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQE----M 748 (760)
Q Consensus 675 ~p~~~~~~~~La~~-~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~----~ 748 (760)
.|.....+...+.+ +...|++++|...|+++++..|+++.+++. +.++...|++++|...|++++...|.+++ +
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 99888877776665 446899999999999999999999988855 77888889999999999999998776654 5
Q ss_pred HHHHHH
Q 004336 749 LELHSR 754 (760)
Q Consensus 749 l~~~~r 754 (760)
+..+.+
T Consensus 466 w~~~~~ 471 (530)
T 2ooe_A 466 WARFLA 471 (530)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-20 Score=185.91 Aligned_cols=211 Identities=13% Similarity=0.095 Sum_probs=178.2
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
..+..++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~-------------- 80 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA------IPYINFANLLSSVNELERALAFY-------------- 80 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCH------HHHHHHHHHHHHTTCHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCCHHHHHHHH--------------
Confidence 3567788889999999999999999999999999995 89999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
++++..+|.+..+++.+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++..|
T Consensus 81 ----~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 81 ----DKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp ----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred ----HHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHH
Q 004336 541 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAH 618 (760)
Q Consensus 541 ~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~ 618 (760)
++ ..++..+|.++...|++++|+..|+++++..|. .++
T Consensus 157 ~~----------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 196 (243)
T 2q7f_A 157 ND----------------------------------------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196 (243)
T ss_dssp TC----------------------------------------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred cc----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 88 778899999999999999999999999997665 889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH
Q 004336 619 QGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 655 (760)
Q Consensus 619 ~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 655 (760)
..+|.++...|++++|...++++++..|++..++..+
T Consensus 197 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 197 YNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 9999999999999888888888888888776666555
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-19 Score=183.51 Aligned_cols=214 Identities=14% Similarity=0.023 Sum_probs=190.0
Q ss_pred HhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHH
Q 004336 469 ESDAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 547 (760)
Q Consensus 469 ~~~p~~-~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~ 547 (760)
..+|.+ +.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----- 104 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN----- 104 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-----
Confidence 345655 78999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcch--HHHHHHHH
Q 004336 548 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK--IRHT--RAHQGLAR 623 (760)
Q Consensus 548 la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~--~~~~--~a~~~La~ 623 (760)
..++..+|.++...|++++|+.+|+++++ ..|. .++..+|.
T Consensus 105 -----------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 105 -----------------------------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp -----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 78889999999999999999999999998 5554 78899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 624 VHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 703 (760)
Q Consensus 624 ~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~ 703 (760)
++...|++++|+..++++ ++.+|.+..++..+|.++...|++++|+..++
T Consensus 150 ~~~~~g~~~~A~~~~~~~------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKS------------------------------LRLNRNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp HHHHTTCHHHHHHHHHHH------------------------------HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH------------------------------HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999986666666554 44556667778888999999999999999999
Q ss_pred HHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004336 704 RAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 752 (760)
Q Consensus 704 kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~ 752 (760)
+++...|++...+ ..+.++...|++++|.+.++++++..|+++.....+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 200 LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999988766 458888889999999999999999999999877654
|
| >3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-22 Score=186.56 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=86.0
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||+++ ...+|.|++ ++++++|+.+++|+|||++. ++.+||.
T Consensus 29 ~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~-~~~~~~f~~ll~~iYtg~~~-i~~~~~~ 102 (129)
T 3ga1_A 29 LQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPA-AVQPQSFQQILSFCYTGRLS-MNVGDQD 102 (129)
T ss_dssp HTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCT-TCCHHHHHHHHHHHHHSEEE-CCTTTHH
T ss_pred hcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECC-CCCHHHHHHHHHHHhCCccc-cCHHHHH
Confidence 36779999999999999999999999999999999987 667899963 79999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHhh
Q 004336 257 EILIFANKFCCERLKDACDRKLASL 281 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~~ 281 (760)
+||.+|++|+++.|++.|++||.+.
T Consensus 103 ~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 103 LLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=175.28 Aligned_cols=172 Identities=15% Similarity=0.114 Sum_probs=148.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 552 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l 552 (760)
+++.+|+++|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+++++...|+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---------- 72 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS---------- 72 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh----------
Confidence 5678899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCC
Q 004336 553 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNN 630 (760)
Q Consensus 553 ~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~ 630 (760)
..++..+|.++...++++.|...+.++++..|. .++..+|.++...|+
T Consensus 73 ------------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~ 122 (184)
T 3vtx_A 73 ------------------------------AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE 122 (184)
T ss_dssp ------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC
Confidence 778888899999999999999999999887666 788888888888888
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 004336 631 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 631 ~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p 710 (760)
+++|+..| +++++++|.++.++.++|.+|..+|++++|+..|+++++.+|
T Consensus 123 ~~~A~~~~------------------------------~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 123 HDKAIEAY------------------------------EKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHH------------------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred chhHHHHH------------------------------HHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 85554444 455566667777888889999999999999999999998888
Q ss_pred CcHH
Q 004336 711 DLHL 714 (760)
Q Consensus 711 ~~~~ 714 (760)
+++.
T Consensus 173 ~~a~ 176 (184)
T 3vtx_A 173 KKAK 176 (184)
T ss_dssp HHHH
T ss_pred cCHH
Confidence 7654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.1e-19 Score=180.22 Aligned_cols=211 Identities=16% Similarity=0.051 Sum_probs=196.8
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+.+++.+|..+...|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 34 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~------------- 94 (252)
T 2ho1_A 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA------DAHAALAVVFQTEMEPKLADEEY------------- 94 (252)
T ss_dssp HHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH------HHHHHHHHHHHHcCCHHHHHHHH-------------
Confidence 34588899999999999999999999999999999985 89999999999999999999999
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~--~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.+++..+|.+..+++.+|.++...|++++|+..|++++. ..|.+..++..+|.++...|++++|+..++++++
T Consensus 95 -----~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 95 -----RKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp -----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--
Q 004336 538 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-- 615 (760)
Q Consensus 538 l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-- 615 (760)
..|.+ ..++..+|.++...|++++|+..|+++++..|.
T Consensus 170 ~~~~~----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (252)
T 2ho1_A 170 LNRNQ----------------------------------------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA 209 (252)
T ss_dssp HCSCC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred cCccc----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 99988 788899999999999999999999999997665
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHH
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEK 654 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~ 654 (760)
.++..++.++...|++++|...++++++..|+.......
T Consensus 210 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 210 RSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 788999999999999999999999999988877665543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-19 Score=186.99 Aligned_cols=247 Identities=12% Similarity=0.014 Sum_probs=200.2
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
.+.+.++..|+..|++++|+..++.. +|.. ..++..++..+...+++++|+..+
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~------~~a~~~la~~~~~~~~~~~A~~~l----------------- 88 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE------LQAVRMFAEYLASHSRRDAIVAEL----------------- 88 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH------HHHHHHHHHHHHCSTTHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhccc---CChh------HHHHHHHHHHHcCCCcHHHHHHHH-----------------
Confidence 34556677888888999999877652 3333 478888999999999999999999
Q ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 464 IYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 464 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
++++.. +|+++.+++.+|.++...|++++|++.|++ |.+.+++..+|.++..+|++++|+..++++++.+|+
T Consensus 89 -~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 162 (291)
T 3mkr_A 89 -DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162 (291)
T ss_dssp -HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC
Confidence 888876 599999999999999999999999999998 899999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhcch--HH
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNN--LGSVYVDCGQLDLAADCYSNALKIRHT--RA 617 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~--Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a 617 (760)
. ...... +..++...|++++|+..|+++++..|. .+
T Consensus 163 ~----------------------------------------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~ 202 (291)
T 3mkr_A 163 A----------------------------------------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLL 202 (291)
T ss_dssp C----------------------------------------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHH
T ss_pred c----------------------------------------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHH
Confidence 7 111111 112334568999999999999997666 88
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Q 004336 618 HQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 697 (760)
Q Consensus 618 ~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~e 697 (760)
++++|.++...|++++|+. .++++++.+|+++.++.++|.++...|+.++
T Consensus 203 ~~~la~~~~~~g~~~eA~~------------------------------~l~~al~~~p~~~~~l~~l~~~~~~~g~~~e 252 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEG------------------------------VLQEALDKDSGHPETLINLVVLSQHLGKPPE 252 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHH------------------------------HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHcCCHHHHHH------------------------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCCHH
Confidence 9999999999999855554 4555666677888888889999999999976
Q ss_pred -HHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 698 -AIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDC 735 (760)
Q Consensus 698 -Ai~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~ 735 (760)
+..+++++++..|+++.+. .+..+.+.+++|..-|
T Consensus 253 aa~~~~~~~~~~~P~~~~~~---d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 253 VTNRYLSQLKDAHRSHPFIK---EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHHHc
Confidence 5688899999999998664 2344445566665544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=204.21 Aligned_cols=215 Identities=16% Similarity=0.161 Sum_probs=190.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCH-HHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 396 RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNW-TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 396 ~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~-~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
.+++++|+..++++....|+.. .+++.+|.++...|++ ++|+.++ ++++..+|++
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a------~~~~~lg~~~~~~g~~~~~A~~~~------------------~~al~~~p~~ 136 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEA------QALMLKGKALNVTPDYSPEAEVLL------------------SKAVKLEPEL 136 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCH------HHHHHHHHHHTSSSSCCHHHHHHH------------------HHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhccCchhH------HHHHHHHHHHHhccccHHHHHHHH------------------HHHHhhCCCC
Confidence 3457888888998888888885 9999999999999999 9999999 9999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhhcCChHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT---------SHCEEGLRKAEESIQMKRSFEAF 545 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~---------g~~eeAl~~~~~al~l~p~~~a~ 545 (760)
+.+++.+|.+|...|++++|+..|+++++++|+ ..++..+|.++... |++++|+..|+++++++|++
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--- 212 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--- 212 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC---
Confidence 999999999999999999999999999999999 79999999999999 99999999999999999999
Q ss_pred HHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhcc---
Q 004336 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC--------GQLDLAADCYSNALKIRH--- 614 (760)
Q Consensus 546 ~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~--------g~~~eA~~~~~~Al~~~~--- 614 (760)
..+++++|.+|... |++++|+.+|+++++.+|
T Consensus 213 -------------------------------------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 213 -------------------------------------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 77888888888888 999999999999999877
Q ss_pred h--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 004336 615 T--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDS 692 (760)
Q Consensus 615 ~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~ 692 (760)
. .+++++|.+|...|++++|+..|+ ++++++|++..++..++.++...
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~------------------------------~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFS------------------------------QAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHH------------------------------HHHHHCTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHH------------------------------HHHHhCCCCHHHHHHHHHHHHHH
Confidence 4 899999999999998855555554 55556667777778889999999
Q ss_pred CCHHHHHHHHHHH
Q 004336 693 HKENEAIAELSRA 705 (760)
Q Consensus 693 g~~~eAi~~l~ka 705 (760)
|++++|++.+.+.
T Consensus 306 g~~~eAi~~~~~~ 318 (474)
T 4abn_A 306 SRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHhccc
Confidence 9999988866543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-18 Score=173.17 Aligned_cols=211 Identities=15% Similarity=0.034 Sum_probs=187.1
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
...+.+++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~------------- 65 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE------LAWLVRAEIYQYLKVNDKAQESF------------- 65 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH-------------
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch------HHHHHHHHHHHHcCChHHHHHHH-------------
Confidence 34567788888899999999999999999999999985 88899999999999999999999
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRL-NCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~Ai~~l~kal~--~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
.+++..+|.+..+++.+|.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..+++++
T Consensus 66 -----~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 66 -----RQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp -----HHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----HHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999 667778999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-h
Q 004336 537 QMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-T 615 (760)
Q Consensus 537 ~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~-~ 615 (760)
+..|++ ..++..+|.++...|++++|+..|+++++..| .
T Consensus 141 ~~~~~~----------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 180 (225)
T 2vq2_A 141 AAQPQF----------------------------------------PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180 (225)
T ss_dssp HHSTTC----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSC
T ss_pred HhCCCC----------------------------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999888 67888899999999999999999999999766 4
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHH
Q 004336 616 --RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEK 654 (760)
Q Consensus 616 --~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~ 654 (760)
..+..++.++...|+.++|..+++.+.+..|++......
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 181 QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 777888888899999988888888888888876655443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-18 Score=197.09 Aligned_cols=361 Identities=13% Similarity=0.022 Sum_probs=264.2
Q ss_pred CChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHH-HHHHccCH
Q 004336 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHML-VREHIDNW 439 (760)
Q Consensus 361 ~~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~-l~~~~g~~ 439 (760)
..+.+...+++.++. .+.....|...+......|++++|+..|++++...| +. ..|..++. +....|++
T Consensus 27 ~~~~a~~~~e~al~~---~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~------~lw~~~~~~~~~~~~~~ 96 (530)
T 2ooe_A 27 PIDKARKTYERLVAQ---FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI------DLWKCYLSYVRETKGKL 96 (530)
T ss_dssp CHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH------HHHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch------HHHHHHHHHHHHHccch
Confidence 444555566665543 345567788899999999999999999999999999 43 56666663 44556777
Q ss_pred HHHHHHHhhhccccccCCcCcHHHHHHHHH---hCCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCC
Q 004336 440 TIADCWLQLYDRWSSVDDIGSLSVIYQMLE---SDAPKGVLYFRQSLLLLR---------LNCPEAAMRSLQLARQHAAS 507 (760)
Q Consensus 440 ~~A~~~l~l~~~~~~~~d~~sl~~~~~al~---~~p~~~~~~~~la~~~~~---------~g~~~~Ai~~l~kal~~~p~ 507 (760)
+.|...+ ...+++++. .+|.+..+|...+..... .|++++|...|+++++ .|.
T Consensus 97 ~~a~~~~--------------~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~ 161 (530)
T 2ooe_A 97 PSYKEKM--------------AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPM 161 (530)
T ss_dssp TTHHHHH--------------HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCC
T ss_pred hhHHHHH--------------HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chh
Confidence 7666533 122255544 345667777777766554 6777777777777777 354
Q ss_pred cH--HHHHHH---------------------------------------------------------------HHHHHHC
Q 004336 508 DH--ERLVYE---------------------------------------------------------------GWILYDT 522 (760)
Q Consensus 508 ~~--~a~~~L---------------------------------------------------------------g~i~~~~ 522 (760)
.. ..|... ..+....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 31 111110 0011111
Q ss_pred ------CCH----HHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccC---CCCcchhhhhHHHHHHhhhHhhcc---H--H
Q 004336 523 ------SHC----EEGLRKAEESIQMKRSF-EAFFLKAYALADSSQ---DSSCSSTVVSLLEDALKCPSDRLR---K--G 583 (760)
Q Consensus 523 ------g~~----eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~---~~~~~~~~~~~leeAl~~~~~~l~---~--~ 583 (760)
++. ++|+..|++++..+|.+ ++|+.+|..+..... ..+.........++|+..+++++. + .
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 122 36778999999999999 999999988875100 000111000112377888877753 2 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH-----
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR----- 655 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~----- 655 (760)
.+|..+|.++...|++++|...|+++++..|. .+|..++.++.+.|++++|...|+++++..|.....+...
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 89999999999999999999999999997764 5899999999999999999999999999888654443321
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHH-HHHHHHcCCHHH
Q 004336 656 SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH----LLHLR-AAFHEHTGDVLG 730 (760)
Q Consensus 656 ~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~----~~~l~-a~~~~~~g~~~~ 730 (760)
...|+.++|...|+++++.+|+++..|..++..+...|+.++|...|++++...|.++ .++.. ..+....|+.+.
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2468999999999999999999999999999999999999999999999999876554 35544 666777899999
Q ss_pred HHHHHHHHHhcCCCcH
Q 004336 731 ALRDCRAALSVDPNDQ 746 (760)
Q Consensus 731 A~~~~~~aL~l~P~~~ 746 (760)
+...++++++..|+++
T Consensus 482 ~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 482 ILKVEKRRFTAFREEY 497 (530)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCchhc
Confidence 9999999999998543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-18 Score=174.82 Aligned_cols=210 Identities=10% Similarity=0.019 Sum_probs=176.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p-~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
+.++..++.+|.++...|++++|+..|+++++.+| .+..+++++|.++...|++++|+..|+++++.+|++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------- 75 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL-------- 75 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH--------
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch--------
Confidence 56779999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch---------HHHHHH
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---------RAHQGL 621 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---------~a~~~L 621 (760)
..++..+|.+|...|++++|+..|+++++..|. .++..+
T Consensus 76 --------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 123 (228)
T 4i17_A 76 --------------------------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKE 123 (228)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 789999999999999999999999999997776 346677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPL--RVYPYRYRAAVLMDSHKENEAI 699 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~--~~~~~~~La~~~~~~g~~~eAi 699 (760)
|.++...|++ ++|+..|+++++++|+ ++.++.++|.++...| .
T Consensus 124 g~~~~~~~~~------------------------------~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~ 168 (228)
T 4i17_A 124 GQKFQQAGNI------------------------------EKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----A 168 (228)
T ss_dssp HHHHHHTTCH------------------------------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----H
T ss_pred hHHHHHhccH------------------------------HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----H
Confidence 7777776666 5555555566666677 6778888899987655 4
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 004336 700 AELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 700 ~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
..++++..+.+.....+ .+......+.+++|+..|+++++++|++++++..+.+++.
T Consensus 169 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 169 DVLRKATPLASSNKEKY-ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHGGGTTTCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 45667777766664333 3334445588999999999999999999999999988865
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=196.99 Aligned_cols=287 Identities=14% Similarity=0.097 Sum_probs=207.9
Q ss_pred CCChhHHHHHHHHHHHHHh-HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC
Q 004336 360 PRSDKTVCFLERLLESAET-DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN 438 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~-~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~ 438 (760)
+..+.+...+++....... ....+.+++.+|.+++..|++++|+..|++++.+.+..........++..+|.++...|+
T Consensus 23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 102 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 102 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC
Confidence 3455666777776665433 334578899999999999999999999999988754333233345789999999999999
Q ss_pred HHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCC--------------------HH
Q 004336 439 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNC--------------------PE 492 (760)
Q Consensus 439 ~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~ 492 (760)
+++|+.++ .+++...|.. +.++..+|.++...|+ ++
T Consensus 103 ~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 103 FDEAIVCC------------------QRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHH------------------HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHH------------------HHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 99999999 7777765432 5689999999999999 99
Q ss_pred HHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhh
Q 004336 493 AAMRSLQLARQH------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTV 565 (760)
Q Consensus 493 ~Ai~~l~kal~~------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~ 565 (760)
+|+..+++++.+ .|....++..+|.++...|++++|+..+++++++.|.. ..
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------- 223 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------- 223 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---------------------
Confidence 999999999886 34446789999999999999999999999999875543 10
Q ss_pred hhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--------HHHHHHHHHHHHcCCHHHHHHH
Q 004336 566 VSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTAYEE 637 (760)
Q Consensus 566 ~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~La~~~~~~g~~~~A~~~ 637 (760)
.....++.++|.+|...|++++|+.+|+++++..+. .++..+|.++...|++++|+..
T Consensus 224 --------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 224 --------------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp --------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 000346666777777777777777777777664221 4666777777777777777777
Q ss_pred HHHHHHhccCc------HHHHHHH----HhcCCHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHcCCHHHHH
Q 004336 638 MTKLIKKARNN------ASAYEKR----SEYCDRELTRADLEMVTQLD------PLRVYPYRYRAAVLMDSHKENEAI 699 (760)
Q Consensus 638 l~~al~~~~~~------~~~~~~~----~~~~~~~~A~~~l~kal~l~------p~~~~~~~~La~~~~~~g~~~eAi 699 (760)
++++++..+.. ..++..+ ...|++++|+..+++++++. +....++..+|.++...|+...+.
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 77776665422 2222222 23367777777777776663 233567888999999888765433
|
| >3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-20 Score=170.49 Aligned_cols=89 Identities=16% Similarity=0.237 Sum_probs=82.8
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|||++|+|||.|||++|+||++||+++ ..+|.++ ++++++|+.+++|+|||++..++.+||.
T Consensus 27 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~--~~~~~~f~~~l~~~Ytg~~~~~~~~~~~ 99 (116)
T 3fkc_A 27 GHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELS--FIRAEIFAEILNYIYSSKIVRVRSDLLD 99 (116)
T ss_dssp HHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC--SSCHHHHHHHHHHHTTSCCCSCCHHHHH
T ss_pred hcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeC--CCCHHHHHHHHHhhcCCCcCCCCHHHHH
Confidence 46779999999999999999999999999999999986 5689997 8999999999999999999339999999
Q ss_pred HHHHHHhhhChHhHHH
Q 004336 257 EILIFANKFCCERLKD 272 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~ 272 (760)
++|.+|++|+++.|++
T Consensus 100 ~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 100 ELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHhCccccCc
Confidence 9999999999999874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=9.6e-19 Score=185.94 Aligned_cols=252 Identities=9% Similarity=-0.086 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHH-------ccCH-------HHHHHHHhhhccccccCCcCcHHHHH
Q 004336 400 DEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREH-------IDNW-------TIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 400 ~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~-------~g~~-------~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
++|+..|++++..+|+++ .+|+.+|.++.. .|++ ++|...+ +
T Consensus 33 ~~a~~~~~~al~~~p~~~------~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~------------------~ 88 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHP------DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY------------------E 88 (308)
T ss_dssp HHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH------------------H
T ss_pred HHHHHHHHHHHHHcCCCH------HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH------------------H
Confidence 789999999999999996 888888888764 4775 7888888 9
Q ss_pred HHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 466 QMLE-SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 466 ~al~-~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~-a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
+++. .+|++..+|..+|.++...|++++|+..|+++++..|.++. +|..+|.++...|++++|+..|+++++..|..
T Consensus 89 rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~- 167 (308)
T 2ond_A 89 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR- 167 (308)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-
Confidence 9999 69999999999999999999999999999999999999887 89999999999999999999999999988877
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhcch--HHHHH
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV-DCGQLDLAADCYSNALKIRHT--RAHQG 620 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~-~~g~~~eA~~~~~~Al~~~~~--~a~~~ 620 (760)
..++...+.+.. ..|++++|...|+++++..|. .++..
T Consensus 168 ---------------------------------------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 208 (308)
T 2ond_A 168 ---------------------------------------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA 208 (308)
T ss_dssp ---------------------------------------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 344444444433 369999999999999997665 88888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHH
Q 004336 621 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPL-RVYPYRYRAAVLMDSHKENEAI 699 (760)
Q Consensus 621 La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~-~~~~~~~La~~~~~~g~~~eAi 699 (760)
++..+...|++++|...|++++...+ ++|+ ....|..++..+...|++++|.
T Consensus 209 ~~~~~~~~g~~~~A~~~~~~al~~~~---------------------------l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 209 YIDYLSHLNEDNNTRVLFERVLTSGS---------------------------LPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHSSS---------------------------SCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhccC---------------------------CCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 89888888888777666666555311 1332 4567777788899999999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 004336 700 AELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHS 753 (760)
Q Consensus 700 ~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~ 753 (760)
..++++++..|++......+.+ ..-.+.+.++|++++.++.++
T Consensus 262 ~~~~~a~~~~p~~~~~~~~~~~-----------~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 262 KVEKRRFTAFREEYEGKETALL-----------VDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHHHHHHHHTTTTTSSCHHHHH-----------HTTTCBTTBCSSCHHHHHTTT
T ss_pred HHHHHHHHHcccccccchHHHH-----------HHHHHhcccCCCCHHHHHhcC
Confidence 9999999999986532211222 112267889999999988653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-19 Score=187.05 Aligned_cols=277 Identities=14% Similarity=0.108 Sum_probs=216.4
Q ss_pred CCChhHHHHHHHHHHHHHh-HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC
Q 004336 360 PRSDKTVCFLERLLESAET-DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN 438 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~-~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~ 438 (760)
...+.+...+++..+.... ....+..+..+|.++...|++++|+..+++++...+..........++..+|.++...|+
T Consensus 19 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 98 (338)
T 3ro2_A 19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98 (338)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence 3455666666766655333 344578899999999999999999999999988743322223335788999999999999
Q ss_pred HHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCC--------------------HH
Q 004336 439 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNC--------------------PE 492 (760)
Q Consensus 439 ~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~ 492 (760)
+++|+.++ .+++...+.. ..++..+|.++...|+ ++
T Consensus 99 ~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 99 FDEAIVCC------------------QRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHH------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHH------------------HHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 99999999 7776654432 4589999999999999 99
Q ss_pred HHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhh
Q 004336 493 AAMRSLQLARQH------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 566 (760)
Q Consensus 493 ~Ai~~l~kal~~------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~ 566 (760)
+|+..+++++.. .+....++..+|.++...|++++|+..+++++++.+..
T Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------ 216 (338)
T 3ro2_A 161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------------------ 216 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc------------------------
Confidence 999999999876 23345688999999999999999999999999765433
Q ss_pred hHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--------HHHHHHHHHHHHcCCHHHHHHHH
Q 004336 567 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTAYEEM 638 (760)
Q Consensus 567 ~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~La~~~~~~g~~~~A~~~l 638 (760)
+.. .....++..+|.++...|++++|+.+|++++...+. .++..+|.++...|++++|...+
T Consensus 217 ~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (338)
T 3ro2_A 217 GDK----------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 286 (338)
T ss_dssp TCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCh----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 000 001568899999999999999999999999985322 68889999999999999999999
Q ss_pred HHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 004336 639 TKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 712 (760)
Q Consensus 639 ~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~ 712 (760)
+++++..+..... +....++..+|.++...|++++|+..+++++.+.+..
T Consensus 287 ~~a~~~~~~~~~~------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 287 LKHLAIAQELKDR------------------------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHTCH------------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcCCc------------------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 9988776522110 1113467788999999999999999999999987653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-19 Score=192.58 Aligned_cols=279 Identities=14% Similarity=0.098 Sum_probs=223.7
Q ss_pred CCChhHHHHHHHHHHHHHh-HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC
Q 004336 360 PRSDKTVCFLERLLESAET-DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN 438 (760)
Q Consensus 360 ~~~~~~~~lle~l~~~a~~-~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~ 438 (760)
+..+.+...+++..+.... ....+.+++.+|.++...|++++|+..|++++..............++..+|.++...|+
T Consensus 62 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 141 (411)
T 4a1s_A 62 GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGR 141 (411)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 3455666777776665333 344578899999999999999999999999998842222222335889999999999999
Q ss_pred HHHHHHHHhhhccccccCCcCcHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCC-----------------HHHHH
Q 004336 439 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLES------DAPKGVLYFRQSLLLLRLNC-----------------PEAAM 495 (760)
Q Consensus 439 ~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~Ai 495 (760)
+++|+.++ .+++.. .|....++..+|.+|...|+ +++|+
T Consensus 142 ~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 142 FDEAAICC------------------ERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHH------------------HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHH------------------HHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 99999999 777666 56678899999999999999 99999
Q ss_pred HHHHHHHHhC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHH
Q 004336 496 RSLQLARQHA------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLL 569 (760)
Q Consensus 496 ~~l~kal~~~------p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~l 569 (760)
..+++++++. +....++..+|.++...|++++|+..+++++++.+.. +..
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------------~~~ 259 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF------------------------GDR 259 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------------TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc------------------------CCc
Confidence 9999998763 3345689999999999999999999999999876543 000
Q ss_pred HHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 570 EDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--------TRAHQGLARVHFLKNNKTTAYEEMTKL 641 (760)
Q Consensus 570 eeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~--------~~a~~~La~~~~~~g~~~~A~~~l~~a 641 (760)
.....++.++|.+|...|++++|+.+|++++...+ ..++..+|.++...|++++|+..++++
T Consensus 260 ----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 260 ----------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp ----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00046889999999999999999999999998544 278899999999999999999999998
Q ss_pred HHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 004336 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL 714 (760)
Q Consensus 642 l~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~ 714 (760)
++..+..... +....++..+|.++...|++++|+.++++++.+.+....
T Consensus 330 l~~~~~~~~~------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 330 LAIAQELGDR------------------------IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHTCH------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHCCCh------------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 8776522110 112356788999999999999999999999998876543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-19 Score=199.08 Aligned_cols=203 Identities=12% Similarity=-0.007 Sum_probs=181.3
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCP-EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~-~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
.+.....|.++.+++.+|.++...|++ ++|+..|+++++.+|++..++..+|.+|...|++++|+..|+++++++|+.
T Consensus 92 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 170 (474)
T 4abn_A 92 EEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK- 170 (474)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCH-
T ss_pred HHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCH-
Confidence 788888999999999999999999999 999999999999999999999999999999999999999999999999886
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhcc
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC---------GQLDLAADCYSNALKIRH 614 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~---------g~~~eA~~~~~~Al~~~~ 614 (760)
.++.++|.++... |++++|+..|+++++.+|
T Consensus 171 ----------------------------------------~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 210 (474)
T 4abn_A 171 ----------------------------------------VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV 210 (474)
T ss_dssp ----------------------------------------HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ----------------------------------------HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC
Confidence 5566677777777 999999999999999877
Q ss_pred h--HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CChHH
Q 004336 615 T--RAHQGLARVHFLK--------NNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDP---LRVYP 681 (760)
Q Consensus 615 ~--~a~~~La~~~~~~--------g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p---~~~~~ 681 (760)
. .+++.+|.+|... |++ ++|+..|+++++++| .++.+
T Consensus 211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~------------------------------~~A~~~~~~al~~~p~~~~~~~~ 260 (474)
T 4abn_A 211 LDGRSWYILGNAYLSLYFNTGQNPKIS------------------------------QQALSAYAQAEKVDRKASSNPDL 260 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHH------------------------------HHHHHHHHHHHHHCGGGGGCHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccccchH------------------------------HHHHHHHHHHHHhCCCcccCHHH
Confidence 7 8999999999888 555 556666666677777 88889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 004336 682 YRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 682 ~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l-~a~~~~~~g~~~~A~~~~~~a 738 (760)
|+++|.+|...|++++|+..|++++...|++...+. .+.++...|++++|++.+.+.
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999997774 488888889999999877554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-18 Score=177.43 Aligned_cols=225 Identities=13% Similarity=0.083 Sum_probs=171.8
Q ss_pred HHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 004336 434 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES----DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 509 (760)
Q Consensus 434 ~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~ 509 (760)
...|++++|+..+ .+++.. +|.++.+++.+|.++...|++++|+..|+++++.+|.+.
T Consensus 16 ~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 77 (275)
T 1xnf_A 16 QPTLQQEVILARM------------------EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP 77 (275)
T ss_dssp CCCHHHHHHHHHH------------------HHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred CccchHHHHHHHH------------------HHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH
Confidence 3457778888887 777776 345677888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHH
Q 004336 510 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 589 (760)
Q Consensus 510 ~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~L 589 (760)
.++..+|.++...|++++|+..|+++++++|++ ..++..+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------------------------------------~~~~~~l 117 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----------------------------------------NYAHLNR 117 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------THHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc----------------------------------------cHHHHHH
Confidence 888888888888888888888888888888877 6777888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHH
Q 004336 590 GSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRAD 667 (760)
Q Consensus 590 g~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~ 667 (760)
|.+|...|++++|+..|+++++..|. .....+ .+....|++++ |+..
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~------------------------------A~~~ 166 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL-YLAEQKLDEKQ------------------------------AKEV 166 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHHHCHHH------------------------------HHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH-HHHHHhcCHHH------------------------------HHHH
Confidence 88888888888888888888887666 222222 23344455544 4455
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHH-HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 668 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL----HLLH-LRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 668 l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~----~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
+++++...|.+...+ .++.++...++.++|+..+++++...|.. ...+ ..+.++...|++++|+..|+++++.+
T Consensus 167 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 167 LKQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 555555555555444 36778888899999999999999877753 3333 44999999999999999999999999
Q ss_pred CCcHHH
Q 004336 743 PNDQEM 748 (760)
Q Consensus 743 P~~~~~ 748 (760)
|++...
T Consensus 246 p~~~~~ 251 (275)
T 1xnf_A 246 VHNFVE 251 (275)
T ss_dssp CTTCHH
T ss_pred chhHHH
Confidence 976653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-19 Score=207.56 Aligned_cols=172 Identities=14% Similarity=0.088 Sum_probs=159.1
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
.++.+.+++.+|.++..+|++++|+..|+++++++|++. .++..+|.++...|++++|+..+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~------~a~~nLg~~l~~~g~~~eA~~~~------------ 66 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA------AAHSNLASVLQQQGKLQEALMHY------------ 66 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH------HHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------
Confidence 456788899999999999999999999999999999995 89999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
+++++++|+++.+++++|.+|..+|++++|++.|+++++++|++..++.++|.+|..+|++++|+..|++++++
T Consensus 67 ------~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 67 ------KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp ------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 539 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 539 ~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
+|++ ..++.++|.+|...|++++|++.|++++++.+
T Consensus 141 ~P~~----------------------------------------~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 141 KPDF----------------------------------------PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp CSCC----------------------------------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred CCCC----------------------------------------hHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 9999 78889999999999999999999999988544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-19 Score=208.29 Aligned_cols=172 Identities=20% Similarity=0.181 Sum_probs=157.6
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
..|+++.+++++|.+|.++|++++|++.|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------- 76 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------- 76 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 627 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~ 627 (760)
+.+++++|.+|..+|++++|+++|+++++++|. .+++++|.+|..
T Consensus 77 ---------------------------------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 77 ---------------------------------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123 (723)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 889999999999999999999999999998887 899999999999
Q ss_pred cCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 628 KNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 707 (760)
Q Consensus 628 ~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~ 707 (760)
.|++++|+ ..|+++++++|+++.++.++|.++...|++++|++.++++++
T Consensus 124 ~g~~~eAi------------------------------~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 124 SGNIPEAI------------------------------ASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCHHHHH------------------------------HHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred cCCHHHHH------------------------------HHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 99885554 455556667778888888999999999999999999999998
Q ss_pred cCCC
Q 004336 708 FKAD 711 (760)
Q Consensus 708 ~~p~ 711 (760)
+.|+
T Consensus 174 l~~~ 177 (723)
T 4gyw_A 174 IVAD 177 (723)
T ss_dssp HHHH
T ss_pred hChh
Confidence 7654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-19 Score=197.47 Aligned_cols=323 Identities=14% Similarity=0.052 Sum_probs=203.4
Q ss_pred HHHHHHhhhHHHhcCCH---HHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHcc-----CHHHHHHHHhhhccccc
Q 004336 383 LLAFHQLGCVRLLRKEY---DEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHID-----NWTIADCWLQLYDRWSS 454 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~---~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g-----~~~~A~~~l~l~~~~~~ 454 (760)
+.+++.+|.++...|++ ++|+.+|++++.. ++ .+++.+|.++...+ ++++|+.++
T Consensus 35 ~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~------~A~~~Lg~~~~~~~~~~~~~~~~A~~~~-------- 97 (452)
T 3e4b_A 35 SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SP------RAQARLGRLLAAKPGATEAEHHEAESLL-------- 97 (452)
T ss_dssp CTGGGTCC-------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CH------HHHHHHHHHHHhCCCCCCcCHHHHHHHH--------
Confidence 45677778777777777 7888888877755 32 56777777555544 667777777
Q ss_pred cCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHH---
Q 004336 455 VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-AASDHERLVYEGWILYDTSHCEEGLR--- 530 (760)
Q Consensus 455 ~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-~p~~~~a~~~Lg~i~~~~g~~eeAl~--- 530 (760)
++++.. +++.+++.+|.+|...+..+++...++..... .+.++.+++.+|.+|...+.++++..
T Consensus 98 ----------~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 98 ----------KKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp ----------HHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred ----------HHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 777764 34447778888887776554443333333222 13456778888888888875544444
Q ss_pred -HHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhh---HHHHHHhhhHhhccH----HHHHHHHHHHHHHc----CC
Q 004336 531 -KAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVS---LLEDALKCPSDRLRK----GQALNNLGSVYVDC----GQ 598 (760)
Q Consensus 531 -~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~---~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~----g~ 598 (760)
+++.+...+| .+++.+|.++... + ..++|+..++++... +..++++|.+|... ++
T Consensus 166 ~~~~~a~~~~~--~a~~~Lg~~~~~~-----------g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 166 RICKAALNTTD--ICYVELATVYQKK-----------QQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HHHHHHTTTCT--THHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCC
T ss_pred HHHHHHHcCCH--HHHHHHHHHHHHc-----------CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 4444444444 4788888888776 5 888888888877333 55668888888765 78
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhccCcHHHHHHHH---hcC-----CHHHHHHH
Q 004336 599 LDLAADCYSNALKIRHTRAHQGLARV-H--FLKNNKTTAYEEMTKLIKKARNNASAYEKRS---EYC-----DRELTRAD 667 (760)
Q Consensus 599 ~~eA~~~~~~Al~~~~~~a~~~La~~-~--~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~---~~~-----~~~~A~~~ 667 (760)
+++|+.+|+++. .+.+.+++++|.+ + ...|++++|+.+|+++++... ..+...++ ..| +.++|+..
T Consensus 233 ~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 233 EKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ--PRAELLLGKLYYEGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 899999999988 6666888899988 4 467889999999998886653 22222221 124 88899999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-cC---CHHHHHHHHHHHH
Q 004336 668 LEMVTQLDPLRVYPYRYRAAVLMD----SHKENEAIAELSRAIAFKADLHLLHLRAAFHEH-TG---DVLGALRDCRAAL 739 (760)
Q Consensus 668 l~kal~l~p~~~~~~~~La~~~~~----~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~-~g---~~~~A~~~~~~aL 739 (760)
|+++. |.++.+++++|.+|.. ..++++|+.+|+++.+.........+ +.+|.. .| ++.+|..+|+++.
T Consensus 310 ~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~L-g~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 310 FEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAI-AQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHH-HHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHH-HHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 99888 8888899999988877 34889999999988875433323223 455544 23 7888999999888
Q ss_pred hcCCCcHHHHHHHHHhh
Q 004336 740 SVDPNDQEMLELHSRVY 756 (760)
Q Consensus 740 ~l~P~~~~~l~~~~r~~ 756 (760)
+.. ++++...+..+.
T Consensus 386 ~~g--~~~a~~~l~~l~ 400 (452)
T 3e4b_A 386 AQD--TPEANDLATQLE 400 (452)
T ss_dssp TTC--CHHHHHHHHHHH
T ss_pred HCC--CHHHHHHHHHHH
Confidence 765 345555555554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-17 Score=167.89 Aligned_cols=134 Identities=11% Similarity=0.102 Sum_probs=100.1
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCC-CCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSP-DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P-~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
..++..|..++..|++++|+..|++++..+| .+. .+++.+|.++...|++++|+.++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~---------------- 65 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS------VTAYNCGVCADNIKKYKEAADYF---------------- 65 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH------HHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc------HHHHHHHHHHHHhhcHHHHHHHH----------------
Confidence 4566667777777777777777777777777 553 66666777777777777777777
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-------ERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~-------~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
++++..+|++..+++.+|.+|...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..|+++
T Consensus 66 --~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 66 --DIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp --HHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777776 55777777777777777777777777
Q ss_pred HhhcCC
Q 004336 536 IQMKRS 541 (760)
Q Consensus 536 l~l~p~ 541 (760)
++++|+
T Consensus 144 l~~~p~ 149 (228)
T 4i17_A 144 TDVTSK 149 (228)
T ss_dssp TTSSCH
T ss_pred HhcCCC
Confidence 777777
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-17 Score=177.96 Aligned_cols=216 Identities=11% Similarity=0.023 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------CCCH-------HHHHHHHHHHHh-hcCChHHHHHHHHHHHccc
Q 004336 492 EAAMRSLQLARQHAASDHERLVYEGWILYD-------TSHC-------EEGLRKAEESIQ-MKRSFEAFFLKAYALADSS 556 (760)
Q Consensus 492 ~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~-------~g~~-------eeAl~~~~~al~-l~p~~~a~~~la~~l~~~~ 556 (760)
++|+..|++++..+|.++++|+.+|..+.. .|++ ++|+..|+++++ ++|++
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~-------------- 98 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-------------- 98 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC--------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc--------------
Confidence 789999999999999999999999999874 5886 999999999999 79998
Q ss_pred CCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--H-HHHHHHHHHHHcCCHHH
Q 004336 557 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--R-AHQGLARVHFLKNNKTT 633 (760)
Q Consensus 557 ~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~-a~~~La~~~~~~g~~~~ 633 (760)
..+|..+|.++...|++++|...|+++++..|. . +|..+|.++...|++++
T Consensus 99 --------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (308)
T 2ond_A 99 --------------------------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred --------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHH
Confidence 788999999999999999999999999997765 4 89999999999999999
Q ss_pred HHHHHHHHHHhccCcHHHHHHHH-----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 634 AYEEMTKLIKKARNNASAYEKRS-----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 634 A~~~l~~al~~~~~~~~~~~~~~-----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
|...|+++++..|....++...+ ..|+.++|...|+++++.+|+++..|..+|..+...|++++|+..|++++..
T Consensus 153 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 153 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999887766655432 2489999999999999999999999999999999999999999999999995
Q ss_pred ---CCC-cHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 004336 709 ---KAD-LHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQE 747 (760)
Q Consensus 709 ---~p~-~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~ 747 (760)
.|+ ...++.. +.+....|++++|...++++++..|++.+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 453 5666654 77778889999999999999999998553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-17 Score=178.70 Aligned_cols=232 Identities=11% Similarity=0.055 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHH
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQH---AAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 549 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~---~p~---~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la 549 (760)
.++.+|..+...|++++|+..|++++++ .++ .+.++..+|.++...|++++|+..+++++++.+.. ...
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---- 180 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN---- 180 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch----
Confidence 3445999999999999999999999987 233 56889999999999999999999999999875433 000
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--------HHHHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGL 621 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~L 621 (760)
...+.++.++|.+|...|++++|+.+|+++++..+. .++.++
T Consensus 181 ------------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 181 ------------------------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 000344555555555555555555555555543111 345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----c-cCcHHHHHHHH----hcCCHHHHHHHHHHHHhh-----CCCChHHHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKK-----A-RNNASAYEKRS----EYCDRELTRADLEMVTQL-----DPLRVYPYRYRA 686 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~-----~-~~~~~~~~~~~----~~~~~~~A~~~l~kal~l-----~p~~~~~~~~La 686 (760)
|.+|...|++++|+..++++++. . |....++..++ ..|++++|+..+++++++ +|.....+..+|
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555555552 2 22222222221 235555555555555554 222233356789
Q ss_pred HHHHHcCC---HHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004336 687 AVLMDSHK---ENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDP 743 (760)
Q Consensus 687 ~~~~~~g~---~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P 743 (760)
.++...|+ +++|+..+++. ...|....++ ..+.+|...|++++|..+|++++++..
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999 78888888776 2222222333 448889999999999999999987644
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=173.93 Aligned_cols=304 Identities=14% Similarity=0.049 Sum_probs=213.5
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
..+..+...|.+++..|++++|+..+++++...|... ......++..+|.++...|++++|..++
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------- 76 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW-FYSRIVATSVLGEVLHCKGELTRSLALM-------------- 76 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHHHHHhcCcHHHHHHHH--------------
Confidence 3456677788888899999999999999999988664 2233457888999999999999999999
Q ss_pred HHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHH
Q 004336 461 LSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--------ASDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 461 l~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~--------p~~~~a~~~Lg~i~~~~g~~e 526 (760)
.+++...|.. ..++..+|.++...|++++|+..+++++... |....++.++|.++...|+++
T Consensus 77 ----~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 77 ----QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp ----HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred ----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 7777655432 2447889999999999999999999999874 345567888999999999999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 527 EGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCY 606 (760)
Q Consensus 527 eAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~ 606 (760)
+|...+++++.+.+.. +.. ....++..+|.++...|++++|...+
T Consensus 153 ~A~~~~~~al~~~~~~------------------------~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~l 197 (373)
T 1hz4_A 153 EAEASARSGIEVLSSY------------------------QPQ-----------QQLQCLAMLIQCSLARGDLDNARSQL 197 (373)
T ss_dssp HHHHHHHHHHHHTTTS------------------------CGG-----------GGHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc------------------------CcH-----------HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999887764 000 00467888999999999999999999
Q ss_pred HHHHhhcch-----H--HH--HHHHHHHHHcCCHHHHHHHHHHHHHhccCc----HHHH----HHHHhcCCHHHHHHHHH
Q 004336 607 SNALKIRHT-----R--AH--QGLARVHFLKNNKTTAYEEMTKLIKKARNN----ASAY----EKRSEYCDRELTRADLE 669 (760)
Q Consensus 607 ~~Al~~~~~-----~--a~--~~La~~~~~~g~~~~A~~~l~~al~~~~~~----~~~~----~~~~~~~~~~~A~~~l~ 669 (760)
++++...+. . .. ..++.++...|++++|...+++++...+.. ...+ ......|++++|...++
T Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 277 (373)
T 1hz4_A 198 NRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 277 (373)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999875211 1 11 234566889999999999998887655421 1111 11223366666666666
Q ss_pred HHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004336 670 MVTQLDPLR------VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDP 743 (760)
Q Consensus 670 kal~l~p~~------~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P 743 (760)
+++...+.. ...+..+|.++...|++++|...+++++...+.... ...+...| +.....+++.+...|
T Consensus 278 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~----~~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 278 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF----ISHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCC----CHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccH----HHHHHHcc--HHHHHHHHHHHhCCC
Confidence 665553321 134555666666666666666666666654332110 11111112 455555666666666
Q ss_pred C
Q 004336 744 N 744 (760)
Q Consensus 744 ~ 744 (760)
-
T Consensus 352 ~ 352 (373)
T 1hz4_A 352 L 352 (373)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=180.28 Aligned_cols=169 Identities=14% Similarity=0.119 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEAA 494 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A 494 (760)
..++..+|.++...|++++|+.++ ++++.. .|....++..+|.++...|++++|
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~------------------~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 88 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLC------------------KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDA 88 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHH
Confidence 578999999999999999999999 777773 677788999999999999999999
Q ss_pred HHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHcccCCCCc
Q 004336 495 MRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-----RSFEAFFLKAYALADSSQDSSC 561 (760)
Q Consensus 495 i~~l~kal~~--------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~-----p~~~a~~~la~~l~~~~~~~~~ 561 (760)
+..|++++.. .|....++..+|.++...|++++|+..+++++++. ++.
T Consensus 89 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------------------- 149 (311)
T 3nf1_A 89 ANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH------------------- 149 (311)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC-------------------
T ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC-------------------
Confidence 9999999987 35667889999999999999999999999999763 111
Q ss_pred chhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------cch--HHHHHHHHHHHHcCCH
Q 004336 562 SSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--------RHT--RAHQGLARVHFLKNNK 631 (760)
Q Consensus 562 ~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~--------~~~--~a~~~La~~~~~~g~~ 631 (760)
.....++..+|.++...|++++|+.+|+++++. .+. .++..+|.++...|++
T Consensus 150 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 211 (311)
T 3nf1_A 150 ------------------PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF 211 (311)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred ------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 001678899999999999999999999999986 343 6899999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 004336 632 TTAYEEMTKLIKKAR 646 (760)
Q Consensus 632 ~~A~~~l~~al~~~~ 646 (760)
++|+..++++++..+
T Consensus 212 ~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 212 KQAETLYKEILTRAH 226 (311)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-17 Score=179.53 Aligned_cols=240 Identities=13% Similarity=-0.026 Sum_probs=192.9
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
....++..|..++..|++++|+..|++++.+.+..++......++..+|.++...|++++|+.++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~--------------- 166 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA--------------- 166 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH---------------
Confidence 34566778999999999999999999999985443333344688999999999999999999999
Q ss_pred HHHHHHHHhCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHH
Q 004336 462 SVIYQMLESDA-------PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEG 528 (760)
Q Consensus 462 ~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeA 528 (760)
.+++...+ ..+.++..+|.+|...|++++|+..|++++++.+.. ..++.++|.+|..+|++++|
T Consensus 167 ---~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 167 ---RQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp ---HHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---HHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 78777643 345689999999999999999999999999875432 35899999999999999999
Q ss_pred HHHHHHHHhh-----c-CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHH
Q 004336 529 LRKAEESIQM-----K-RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLA 602 (760)
Q Consensus 529 l~~~~~al~l-----~-p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA 602 (760)
+..+++++++ + |.. +.++.++|.+|...|++++|
T Consensus 244 ~~~~~~al~~~~~~~~~~~~----------------------------------------~~~~~~l~~~~~~~g~~~~A 283 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPSL----------------------------------------PQAYFLITQIHYKLGKIDKA 283 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGGH----------------------------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhccchhH----------------------------------------HHHHHHHHHHHHHCCCHHHH
Confidence 9999999984 2 222 67899999999999999999
Q ss_pred HHHHHHHHhhc-----ch--HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 004336 603 ADCYSNALKIR-----HT--RAHQGLARVHFLKNN---KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVT 672 (760)
Q Consensus 603 ~~~~~~Al~~~-----~~--~a~~~La~~~~~~g~---~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal 672 (760)
+.+|+++++.. +. ..+..+|.++...|+ +.+|+..+++.
T Consensus 284 ~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~------------------------------- 332 (383)
T 3ulq_A 284 HEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK------------------------------- 332 (383)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-------------------------------
Confidence 99999999853 22 345678999999998 44444444322
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 004336 673 QLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 673 ~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p 710 (760)
...|....++..+|.+|...|++++|+.++++++....
T Consensus 333 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 333 MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 11222345677889999999999999999999997654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=185.47 Aligned_cols=321 Identities=12% Similarity=-0.019 Sum_probs=243.7
Q ss_pred HHHHHHHhhhHHHhcC-----CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccC
Q 004336 382 RLLAFHQLGCVRLLRK-----EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 456 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g-----~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~ 456 (760)
.+.+++.+|.++...+ ++++|+.+|++++.. +++ .+++.+|.++...+..+++...+
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~------~A~~~Lg~~y~~~~~~~~~~~a~---------- 129 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEG------NTLIPLAMLYLQYPHSFPNVNAQ---------- 129 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCS------SCHHHHHHHHHHCGGGCTTCCHH----------
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCH------HHHHHHHHHHHhCCCCCCCHHHH----------
Confidence 6788999999777766 899999999999884 444 67899999998877655443322
Q ss_pred CcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHhCCCcHHHHHHHHHHHHHCC---CHHHHH
Q 004336 457 DIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR----SLQLARQHAASDHERLVYEGWILYDTS---HCEEGL 529 (760)
Q Consensus 457 d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~----~l~kal~~~p~~~~a~~~Lg~i~~~~g---~~eeAl 529 (760)
..+.++.. +.++.+++.+|.+|...+.++++.. +++.+...+| .+++.||.+|...| ++++|+
T Consensus 130 -----~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 130 -----QQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp -----HHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----HHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHH
Confidence 11244433 4567899999999999995555544 4555544444 49999999999999 999999
Q ss_pred HHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--HHHHHHHHHH-H--HHcCCHHHHH
Q 004336 530 RKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--GQALNNLGSV-Y--VDCGQLDLAA 603 (760)
Q Consensus 530 ~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~--~~a~~~Lg~~-y--~~~g~~~eA~ 603 (760)
.+|+++.+..|.. ..++.+|.++.... ...+..++|+..|+++. + +.+++++|.+ + ...+++++|+
T Consensus 200 ~~~~~aa~~g~~~a~~~~~Lg~~y~~g~-------~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 200 KQMEAGVSRGTVTAQRVDSVARVLGDAT-------LGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHTCGG-------GSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 9999999998888 77799999997642 22246778888888776 5 8899999998 4 5789999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhccCcHHHHHHHHh---c-----CCHHHHHHHHHH
Q 004336 604 DCYSNALKIRHTRAHQGLARVHFLKN-----NKTTAYEEMTKLIKKARNNASAYEKRSE---Y-----CDRELTRADLEM 670 (760)
Q Consensus 604 ~~~~~Al~~~~~~a~~~La~~~~~~g-----~~~~A~~~l~~al~~~~~~~~~~~~~~~---~-----~~~~~A~~~l~k 670 (760)
.+|+++.+.+...++++||.+|. .| ++++|+.+|+++. +.+..+...++. . .+.++|+..|++
T Consensus 272 ~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 272 KYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 99999999998899999999998 66 9999999999998 655555544432 1 389999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCC
Q 004336 671 VTQLDPLRVYPYRYRAAVLMD----SHKENEAIAELSRAIAFKADLHLLHLRAAFHE--HTGDVLGALRDCRAALSVDPN 744 (760)
Q Consensus 671 al~l~p~~~~~~~~La~~~~~----~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~--~~g~~~~A~~~~~~aL~l~P~ 744 (760)
+.+ +.++.+.+++|.+|.. ..++.+|..+|+++.+..+......+ ..+.. ..++..+|....++.....+.
T Consensus 348 Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l-~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 348 AAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLA-TQLEAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp HHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 987 4568889999999985 46899999999999986654433333 33322 225677888888877765544
Q ss_pred c
Q 004336 745 D 745 (760)
Q Consensus 745 ~ 745 (760)
.
T Consensus 425 ~ 425 (452)
T 3e4b_A 425 L 425 (452)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=194.07 Aligned_cols=169 Identities=16% Similarity=0.059 Sum_probs=150.0
Q ss_pred hhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHH--------HhCCCcHHHHHHHH
Q 004336 411 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML--------ESDAPKGVLYFRQS 482 (760)
Q Consensus 411 ~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al--------~~~p~~~~~~~~la 482 (760)
..+|+++ .+++..+ ...|++++|+..+ ++++ ..+|++..+++.+|
T Consensus 388 ~~~p~~~------~a~~~~a---~~~~~~~~A~~~~------------------~~al~~~~~~~~~~~p~~~~~~~~~a 440 (681)
T 2pzi_A 388 LVDPTDV------AASVLQA---TVLSQPVQTLDSL------------------RAARHGALDADGVDFSESVELPLMEV 440 (681)
T ss_dssp CCCTTST------THHHHHH---TTTCCHHHHHHHH------------------HHHHTC-------CCTTCSHHHHHHH
T ss_pred cCCCCCc------chHHhhc---ccccCHHHHHHHH------------------HHhhhhcccccccccccchhHHHHHH
Confidence 4577775 5666555 7789999999999 8898 88999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcc
Q 004336 483 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCS 562 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~ 562 (760)
.++...|++++|+..|+++++.+|++..+++++|.++...|++++|+..|+++++++|++
T Consensus 441 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-------------------- 500 (681)
T 2pzi_A 441 RALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-------------------- 500 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--------------------
T ss_pred HHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 563 STVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTK 640 (760)
Q Consensus 563 ~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~ 640 (760)
..+++++|.++...|++++ +..|+++++.+|. .+++++|.++...|++++|+..|++
T Consensus 501 --------------------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 501 --------------------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp --------------------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred --------------------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888999999999999999 9999999998776 8999999999999999666666655
Q ss_pred HHHhccC
Q 004336 641 LIKKARN 647 (760)
Q Consensus 641 al~~~~~ 647 (760)
+++.+|.
T Consensus 560 al~l~P~ 566 (681)
T 2pzi_A 560 VPPTSRH 566 (681)
T ss_dssp SCTTSTT
T ss_pred hcccCcc
Confidence 5444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=164.58 Aligned_cols=192 Identities=9% Similarity=-0.046 Sum_probs=157.4
Q ss_pred hhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc---HHHHHHHHHHHHH
Q 004336 411 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK---GVLYFRQSLLLLR 487 (760)
Q Consensus 411 ~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~---~~~~~~la~~~~~ 487 (760)
..+|.++ ..++.+|..+...|++++|+..+ ++++..+|++ ..+++.+|.++..
T Consensus 9 ~~~~~~~------~~~~~~a~~~~~~g~~~~A~~~~------------------~~~l~~~p~~~~~~~a~~~lg~~~~~ 64 (261)
T 3qky_A 9 RLRHSSP------QEAFERAMEFYNQGKYDRAIEYF------------------KAVFTYGRTHEWAADAQFYLARAYYQ 64 (261)
T ss_dssp --CCSSH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHGGGCSCSTTHHHHHHHHHHHHHH
T ss_pred CCCCCCH------HHHHHHHHHHHHhCCHHHHHHHH------------------HHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 4566774 89999999999999999999999 9999999998 9999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcc
Q 004336 488 LNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYD--------TSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 555 (760)
Q Consensus 488 ~g~~~~Ai~~l~kal~~~p~---~~~a~~~Lg~i~~~--------~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~ 555 (760)
.|++++|+..|+++++..|+ .+.+++.+|.++.. .|++++|+..|+++++..|++ .+...+..+....
T Consensus 65 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 65 NKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 99999999999999999874 46789999999999 999999999999999999987 3322222111111
Q ss_pred cCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHc--
Q 004336 556 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLK-- 628 (760)
Q Consensus 556 ~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~-- 628 (760)
. .....++.+|.+|...|++++|+..|+++++..|. .+++.+|.+|...
T Consensus 145 -----------~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 200 (261)
T 3qky_A 145 -----------A-------------KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAE 200 (261)
T ss_dssp -----------H-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred -----------H-------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcc
Confidence 0 01566889999999999999999999999997654 6899999999987
Q ss_pred --------CCHHHHHHHHHHHHHhccCcHH
Q 004336 629 --------NNKTTAYEEMTKLIKKARNNAS 650 (760)
Q Consensus 629 --------g~~~~A~~~l~~al~~~~~~~~ 650 (760)
|++++|+..|+++++..|+...
T Consensus 201 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 201 QSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred cchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 6666666666666666665443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.1e-17 Score=166.23 Aligned_cols=195 Identities=11% Similarity=0.026 Sum_probs=165.1
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+..++..|..++..|+|++|+..|++++..+|+++ ....+++.+|.++...|++++|+..+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~--------------- 75 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE---WAADAQFYLARAYYQNKEYLLAASEY--------------- 75 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST---THHHHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc---chHHHHHHHHHHHHHhCcHHHHHHHH---------------
Confidence 355678888888888899999999999999999983 11288999999999999999999999
Q ss_pred HHHHHHHHhCCC---cHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCcHHHH-----------------H
Q 004336 462 SVIYQMLESDAP---KGVLYFRQSLLLLR--------LNCPEAAMRSLQLARQHAASDHERL-----------------V 513 (760)
Q Consensus 462 ~~~~~al~~~p~---~~~~~~~la~~~~~--------~g~~~~Ai~~l~kal~~~p~~~~a~-----------------~ 513 (760)
++++...|+ ...+++.+|.++.. .|++++|+..|+++++..|++..+. +
T Consensus 76 ---~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~ 152 (261)
T 3qky_A 76 ---ERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQY 152 (261)
T ss_dssp ---HHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999874 47789999999999 9999999999999999999886555 8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHH
Q 004336 514 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVY 593 (760)
Q Consensus 514 ~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y 593 (760)
.+|.+|...|++++|+..|+++++..|+.. ....++..+|.+|
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-------------------------------------~~~~a~~~l~~~~ 195 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTP-------------------------------------WADDALVGAMRAY 195 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTST-------------------------------------THHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCc-------------------------------------hHHHHHHHHHHHH
Confidence 899999999999999999999999999850 0045666677777
Q ss_pred HHc----------CCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcCCHHHH
Q 004336 594 VDC----------GQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTA 634 (760)
Q Consensus 594 ~~~----------g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~g~~~~A 634 (760)
... |++++|+..|+++++..|. .+...++.++...++++++
T Consensus 196 ~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 196 IAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 655 8999999999999997665 5666777777777766443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-16 Score=170.21 Aligned_cols=241 Identities=14% Similarity=-0.012 Sum_probs=191.8
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
......++..|..++..|++++|+..|++++.+.+...+......++..+|.++...|+++.|+.++
T Consensus 98 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~------------- 164 (378)
T 3q15_A 98 LLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI------------- 164 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH-------------
Confidence 4445577889999999999999999999999886554444455688999999999999999999999
Q ss_pred cHHHHHHHHHhCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHH
Q 004336 460 SLSVIYQMLESDA-------PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 460 sl~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p------~~~~a~~~Lg~i~~~~g~~e 526 (760)
.+++...+ ..+.++.++|.+|...|++++|++.|++++++.+ ....++.++|.++..+|+++
T Consensus 165 -----~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 165 -----LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp -----HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred -----HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 77776543 2356788999999999999999999999998643 23467899999999999999
Q ss_pred HHHHHHHHHHhh-----cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHH
Q 004336 527 EGLRKAEESIQM-----KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDL 601 (760)
Q Consensus 527 eAl~~~~~al~l-----~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~e 601 (760)
+|+..+++++.+ +|.. ..++.++|.++...|++++
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~----------------------------------------~~~~~~la~~~~~~g~~~~ 279 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLL----------------------------------------PKVLFGLSWTLCKAGQTQK 279 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGH----------------------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhhCChhH----------------------------------------HHHHHHHHHHHHHCCCHHH
Confidence 999999999973 3333 6788999999999999999
Q ss_pred HHHHHHHHHhhcc-----h--HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHH
Q 004336 602 AADCYSNALKIRH-----T--RAHQGLARVHFLKNN---KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMV 671 (760)
Q Consensus 602 A~~~~~~Al~~~~-----~--~a~~~La~~~~~~g~---~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~ka 671 (760)
|+.++++++++.+ . ..+..++.++...|+ +.+|+..+++.
T Consensus 280 A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~------------------------------ 329 (378)
T 3q15_A 280 AFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK------------------------------ 329 (378)
T ss_dssp HHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC------------------------------
Confidence 9999999998532 2 455667777777777 54454444431
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004336 672 TQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 709 (760)
Q Consensus 672 l~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~ 709 (760)
...|.....+..+|.+|...|++++|+.+|+++++..
T Consensus 330 -~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 330 -NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 1111223456788999999999999999999998754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=173.30 Aligned_cols=232 Identities=13% Similarity=0.036 Sum_probs=183.7
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhh--------CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhcc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTL--------SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 451 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l--------~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~ 451 (760)
...+.++..+|.++...|++++|+..|++++.+ .|.. ..++..+|.++...|++++|+.++
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~----- 92 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDV------ATMLNILALVYRDQNKYKDAANLL----- 92 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHH------HHHHHHHHHHHHHTTCHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHCCCHHHHHHHH-----
Confidence 345667888888999999999999999999986 3333 478999999999999999999999
Q ss_pred ccccCCcCcHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHH
Q 004336 452 WSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--------ASDHERLVYE 515 (760)
Q Consensus 452 ~~~~~d~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~--------p~~~~a~~~L 515 (760)
.+++.. .|....+++.+|.++...|++++|+..|+++++.. |....++..+
T Consensus 93 -------------~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 93 -------------NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp -------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 666665 46678899999999999999999999999999874 5567789999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhh--------cCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----
Q 004336 516 GWILYDTSHCEEGLRKAEESIQM--------KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---- 582 (760)
Q Consensus 516 g~i~~~~g~~eeAl~~~~~al~l--------~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~---- 582 (760)
|.++...|++++|+..+++++.. .|.. .++..+|.++... +++++|+..+.+.+..
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ-----------GKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998 5555 7899999999998 8888888887777432
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004336 583 ---------------GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 645 (760)
Q Consensus 583 ---------------~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~ 645 (760)
...+..++..+...+.+.+|...++++....+. .++..+|.+|...|++++|+..+++++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 334445556666777888888889888876655 889999999999999999999999999887
Q ss_pred c
Q 004336 646 R 646 (760)
Q Consensus 646 ~ 646 (760)
|
T Consensus 309 ~ 309 (311)
T 3nf1_A 309 K 309 (311)
T ss_dssp C
T ss_pred h
Confidence 6
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-17 Score=163.28 Aligned_cols=182 Identities=11% Similarity=-0.045 Sum_probs=104.2
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..++..|..++..|++++|+..|++++..+|+++ .+++..+. ...
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~~-----~~~----------------------- 49 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT------EMYYWTNV-----DKN----------------------- 49 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH------HHHHHHHS-----CTT-----------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------HHHHHhhh-----cch-----------------------
Confidence 34556677777888899999999999999999985 66655210 000
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
....+...+.+|.+|...|++++|+..|+++++++|++..++..+|.++...|++++|+..|+++++++|++
T Consensus 50 --------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 50 --------SEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp --------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred --------hhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 000122344566666666666666666666666666666666666666666666666666666666666666
Q ss_pred -HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 543 -EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 543 -~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~---~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
.+++.+|.++...+ ....+.+...+.....+ ..+++.+|..+...|++++|+.+|++++++.|.
T Consensus 122 ~~a~~~lg~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 122 LAANIFLGNYYYLTA---------EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 33333333332220 00111112222111111 234455555566666666666666666665554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=168.69 Aligned_cols=215 Identities=13% Similarity=0.038 Sum_probs=162.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcc
Q 004336 482 SLLLLRLNCPEAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 555 (760)
Q Consensus 482 a~~~~~~g~~~~Ai~~l~kal~~~p~------~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~ 555 (760)
|.+|...|++++|+..|++++.+.+. .+.++.++|.+|..+|++++|+..|++++.+.|..
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~------------- 110 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR------------- 110 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------------
Confidence 67888999999999999999987432 25789999999999999999999999999876543
Q ss_pred cCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcch--------HHHHHHHHHHH
Q 004336 556 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-GQLDLAADCYSNALKIRHT--------RAHQGLARVHF 626 (760)
Q Consensus 556 ~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~-g~~~eA~~~~~~Al~~~~~--------~a~~~La~~~~ 626 (760)
+....+ +.++.++|.+|... |++++|+.+|++++++.+. .++.++|.++.
T Consensus 111 -----------g~~~~~----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 111 -----------GQFRRG----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (292)
T ss_dssp -----------TCHHHH----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----------CCHHHH----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 111111 56889999999996 9999999999999996542 56889999999
Q ss_pred HcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 627 LKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 706 (760)
Q Consensus 627 ~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal 706 (760)
..|++++|+..|+++++..|....... .....+.++|.++..+|++++|+..|++++
T Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIKSSMGNRLSQW-----------------------SLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGG-----------------------GHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCcccH-----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998888888877777664321100 001257788999999999999999999999
Q ss_pred HcCCCcHHHH----H--HHHHHH--HcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 004336 707 AFKADLHLLH----L--RAAFHE--HTGDVLGALRDCRAALSVDPNDQEMLELHS 753 (760)
Q Consensus 707 ~~~p~~~~~~----l--~a~~~~--~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~ 753 (760)
.+.|+..... + ....+. ..+++++|+..|++++.++|.+..++.-..
T Consensus 227 ~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 227 SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 9999876432 1 133333 347799999999999999998876654433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.4e-16 Score=149.69 Aligned_cols=169 Identities=11% Similarity=0.077 Sum_probs=136.7
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+..++.+|..+...|++++|+..|++++..+|++. .++..+|.++...|++++|..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~--------------- 65 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV------DVALHLGIAYVKTGAVDRGTELL--------------- 65 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH------HHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh------HHHHHHHHHHHHcCCHHHHHHHH---------------
Confidence 455667777777777888888888888888888774 77788888888888888888888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|+
T Consensus 66 ---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 66 ---ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142 (186)
T ss_dssp ---HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---HHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888777
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
+ ..++..+|.++...|++++|..+|+++++..|
T Consensus 143 ~----------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 143 E----------------------------------------GKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp C----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred c----------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 7 66777788888888888888888888877544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=166.98 Aligned_cols=232 Identities=13% Similarity=0.051 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p------~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
.++.+|..+...|++++|+..|++++++.+ ..+.+++.+|.++...|++++|+..+++++++.+..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-------- 174 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-------- 174 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC--------
Confidence 577899999999999999999999998732 346789999999999999999999999999875543
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-----h---HHHHHHH
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-----T---RAHQGLA 622 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~-----~---~a~~~La 622 (760)
+... ...+.+++++|.+|...|++++|+.+|++++++.+ . .++.++|
T Consensus 175 ----------------~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 229 (378)
T 3q15_A 175 ----------------PLYS---------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA 229 (378)
T ss_dssp ----------------TTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------CCch---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0000 00156677777777777777777777777777421 1 5677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHH-----hccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhC-----CCChHHHHHHHHH
Q 004336 623 RVHFLKNNKTTAYEEMTKLIK-----KARNNASAYEKRS----EYCDRELTRADLEMVTQLD-----PLRVYPYRYRAAV 688 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~l~~al~-----~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~-----p~~~~~~~~La~~ 688 (760)
.+|...|++++|+..++++++ ..|....++..++ ..|++++|+..+++++++. |.....+..++.+
T Consensus 230 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777 4444333333332 3477778888888877763 3334456778888
Q ss_pred HHHcCC---HHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 689 LMDSHK---ENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 689 ~~~~g~---~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
+...|+ +.+|+..+++. ...|+...+. ..|.+|...|++++|..+|+++++..
T Consensus 310 y~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 888888 88888888762 1222222333 44999999999999999999998754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=158.65 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
+..+...|..+...|++++|+..+ .+++..+|+++.+++..+. ...
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~~~~-----~~~----------- 49 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYF------------------RQTIALNIDRTEMYYWTNV-----DKN----------- 49 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCHHHHHHHHHHHS-----CTT-----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCChHHHHHhhh-----cch-----------
Confidence 467788999999999999999999 9999999999988877542 111
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
....+.....+|.++...|++++|+..|+++++++|++
T Consensus 50 --~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------------------- 87 (208)
T 3urz_A 50 --SEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN---------------------------------------- 87 (208)
T ss_dssp --SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------
T ss_pred --hhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----------------------------------------
Confidence 01123456679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCC--HHHHHHHHHHHHHhccCcHHHH---HHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNN--KTTAYEEMTKLIKKARNNASAY---EKR 655 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~--~~~A~~~l~~al~~~~~~~~~~---~~~ 655 (760)
..++.++|.++...|++++|+.+|+++++++|. .+++++|.+|+..|+ ...+...+++++...|.....+ ...
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~ 167 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSK 167 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 677777888888888888888888888887666 777888888776654 3445566666554333211111 111
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCC
Q 004336 656 SEYCDRELTRADLEMVTQLDPLR 678 (760)
Q Consensus 656 ~~~~~~~~A~~~l~kal~l~p~~ 678 (760)
...|++++|+..|+++++++|+.
T Consensus 168 ~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 168 LFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHccCHHHHHHHHHHHHHhCCCH
Confidence 23467788888888888888863
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=189.18 Aligned_cols=184 Identities=15% Similarity=0.018 Sum_probs=152.5
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 469 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR--------QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal--------~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
..+|+++.+++..| ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 35688888888777 78999999999999999 89999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHH
Q 004336 541 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAH 618 (760)
Q Consensus 541 ~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~ 618 (760)
++ ..+++++|.+|...|++++|+..|+++++.+|. .++
T Consensus 465 ~~----------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 504 (681)
T 2pzi_A 465 WR----------------------------------------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPK 504 (681)
T ss_dssp CC----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred ch----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99 889999999999999999999999999998877 899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Q 004336 619 QGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEA 698 (760)
Q Consensus 619 ~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eA 698 (760)
+++|.++...|++++ +..|+ ++++++|++..+++++|.++...|++++|
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~------------------------------~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQ------------------------------TVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHH------------------------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCChHH-HHHHH------------------------------HHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999865 55555 45555566666677777777777777777
Q ss_pred HHHHHHHHHcCCCcHHHHHH-HHHHHHcC
Q 004336 699 IAELSRAIAFKADLHLLHLR-AAFHEHTG 726 (760)
Q Consensus 699 i~~l~kal~~~p~~~~~~l~-a~~~~~~g 726 (760)
+..|+++++.+|++..+++. +.++...|
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 77777777777777666643 55554433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.6e-14 Score=167.04 Aligned_cols=287 Identities=15% Similarity=0.070 Sum_probs=203.5
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHH
Q 004336 389 LGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 468 (760)
Q Consensus 389 lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al 468 (760)
.|.++...|.|++|..+|+++- .+ ...+..++...+++++|.+++ ++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~---------~~A~~VLie~i~nldrAiE~A------------------er-- 1101 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VN---------TSAVQVLIEHIGNLDRAYEFA------------------ER-- 1101 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CH---------HHHHHHHHHHHhhHHHHHHHH------------------Hh--
Confidence 4888888889999999999862 11 111334455778888888877 43
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHH
Q 004336 469 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 548 (760)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~l 548 (760)
.+.+.+|+.+|.++...|++++|+..|.++ +++..+..+|.++...|++++|+++|..+.+..++..+...+
T Consensus 1102 ---vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~L 1173 (1630)
T 1xi4_A 1102 ---CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETEL 1173 (1630)
T ss_pred ---cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHH
Confidence 366899999999999999999999999875 788999999999999999999999999999887665333357
Q ss_pred HHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 004336 549 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLK 628 (760)
Q Consensus 549 a~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~ 628 (760)
|.+|+.. +++++ ++.|..... ...+..+|..+...|+|++|..+|.++ ..|..+|.++.+.
T Consensus 1174 afaYAKl-----------~rlee-le~fI~~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1174 IFALAKT-----------NRLAE-LEEFINGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHL 1234 (1630)
T ss_pred HHHHHhh-----------cCHHH-HHHHHhCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHh
Confidence 7777776 44443 333322222 234456777777777777777777765 3566677777777
Q ss_pred CCHHHHHHHHHHHHHhcc-------------------------CcHHHHHH----HHhcCCHHHHHHHHHHHHhhCCCCh
Q 004336 629 NNKTTAYEEMTKLIKKAR-------------------------NNASAYEK----RSEYCDRELTRADLEMVTQLDPLRV 679 (760)
Q Consensus 629 g~~~~A~~~l~~al~~~~-------------------------~~~~~~~~----~~~~~~~~~A~~~l~kal~l~p~~~ 679 (760)
|++++|++.++++..... .++..+.. ....|.+++|+..+++++.++|.+.
T Consensus 1235 ge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A 1235 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred CCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence 777777777766533221 01111111 2234889999999999999998888
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCC-----CcHHHHHH-HHHHHHcCCHHHHHHHH
Q 004336 680 YPYRYRAAVLMD--SHKENEAIAELSRAIAFKA-----DLHLLHLR-AAFHEHTGDVLGALRDC 735 (760)
Q Consensus 680 ~~~~~La~~~~~--~g~~~eAi~~l~kal~~~p-----~~~~~~l~-a~~~~~~g~~~~A~~~~ 735 (760)
..+..+|.+|.+ -++..++++.|...+.+.| +...+|.. ..+|.+-|+++.|+...
T Consensus 1315 gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1315 GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 888888877765 4577888888888877766 44455544 66677779999998433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=168.12 Aligned_cols=212 Identities=11% Similarity=-0.038 Sum_probs=164.9
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
+...|.++...|+|++|+..|++++.+.+...+......++..+|.++...|++++|+.++ +
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~------------------~ 101 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL------------------E 101 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH------------------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH------------------H
Confidence 3444777778889999999999999987654333444578999999999999999999999 8
Q ss_pred HHHHhCCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHH
Q 004336 466 QMLESDAPK------GVLYFRQSLLLLRL-NCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKA 532 (760)
Q Consensus 466 ~al~~~p~~------~~~~~~la~~~~~~-g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~ 532 (760)
+++...|.. +.++.++|.+|... |++++|+.+|++++++.|.. ..++.++|.++..+|++++|+..|
T Consensus 102 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 181 (292)
T 1qqe_A 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 888876543 56899999999996 99999999999999987754 567899999999999999999999
Q ss_pred HHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 533 EESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 533 ~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
++++.+.|++ ...+ ....++.++|.++...|++++|+.+|+++++
T Consensus 182 ~~al~~~~~~~~~~~----------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 182 SKLIKSSMGNRLSQW----------------------------------SLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHTTSSCTTTGG----------------------------------GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHhcCCcccH----------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999998876 1000 0035788999999999999999999999999
Q ss_pred hcch-------HHHHHHHHHHH--HcCCHHHHHHHHHHHHHhccCcH
Q 004336 612 IRHT-------RAHQGLARVHF--LKNNKTTAYEEMTKLIKKARNNA 649 (760)
Q Consensus 612 ~~~~-------~a~~~La~~~~--~~g~~~~A~~~l~~al~~~~~~~ 649 (760)
++|. ..+..++..+. ..+++++|+..|++++..+|...
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 8775 13344555443 23456666666665555555433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=163.06 Aligned_cols=138 Identities=14% Similarity=0.125 Sum_probs=120.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc----
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK---- 539 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~---- 539 (760)
|..+.++..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++.+.
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 677889999999999999999999999999987 36667889999999999999999999999999762
Q ss_pred -CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Q 004336 540 -RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI------ 612 (760)
Q Consensus 540 -p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~------ 612 (760)
++. .....++.++|.+|...|++++|+.+|+++++.
T Consensus 120 ~~~~-------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 120 GKFH-------------------------------------PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp CTTC-------------------------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCC-------------------------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 111 001678999999999999999999999999987
Q ss_pred --cch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 613 --RHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 613 --~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
.+. .++..+|.++...|++++|+..++++++..+
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 443 7899999999999999999999999998754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-17 Score=152.82 Aligned_cols=144 Identities=8% Similarity=0.045 Sum_probs=128.3
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
.+|.++..+|++++|+..+++++..+|+++ .+++.+|.+|...|++++|+.++ +++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~------~~~~~la~~y~~~~~~~~A~~~~------------------~~a 57 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKS------IKGFYFAKLYYEAKEYDLAKKYI------------------CTY 57 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHH------TTHHHHHHHHHHTTCHHHHHHHH------------------HHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHH
Confidence 368888889999999999999999999885 78889999999999999999999 999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH-HHHHHhhcCCh-HHH
Q 004336 468 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK-AEESIQMKRSF-EAF 545 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~-~~~al~l~p~~-~a~ 545 (760)
+..+|+++.+|+.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|++ .++
T Consensus 58 l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 58 INVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887765 59999999999 666
Q ss_pred HHHHHHHHcc
Q 004336 546 FLKAYALADS 555 (760)
Q Consensus 546 ~~la~~l~~~ 555 (760)
..++.++...
T Consensus 138 ~l~~~ll~~~ 147 (150)
T 4ga2_A 138 KLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHh
Confidence 6666665544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-15 Score=144.93 Aligned_cols=168 Identities=13% Similarity=0.080 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
...+..+|..+...|++++|+.++ .+++..+|.+..+++.+|.++...|++++|+..+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 69 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLL------------------EQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL 69 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHH------------------TTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHH------------------HHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467888999999999999999999 88888899999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
+..|.+..++..+|.++...|++++|+..+++++...|++
T Consensus 70 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------------- 109 (186)
T 3as5_A 70 ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN---------------------------------------- 109 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------------------------------------
T ss_pred hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh----------------------------------------
Confidence 9999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN 648 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~ 648 (760)
..++..+|.++...|++++|+.+|+++++..|. .++..+|.++...|++++|...++++++..|+.
T Consensus 110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 778899999999999999999999999997765 889999999999999999999999999887744
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-13 Score=165.62 Aligned_cols=315 Identities=12% Similarity=0.030 Sum_probs=234.3
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
+....|+++|..+...|++++|+..|.++ +++ .++..+|..+.+.|++++|+.++
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~------say~eVa~~~~~lGkyEEAIeyL-------------- 1157 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP------SSYMEVVQAANTSGNWEELVKYL-------------- 1157 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CCh------HHHHHHHHHHHHcCCHHHHHHHH--------------
Confidence 34567888888888888888888888775 453 77778888888888888888888
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
..+....++ +.+...+|.+|.+++++++ ++.|. ...+...+..+|..+...|++++|+..|.++
T Consensus 1158 ----~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1158 ----QMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred ----HHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 666665533 2223348888888888774 44442 2334456667888888888888888888886
Q ss_pred ChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHH
Q 004336 541 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQG 620 (760)
Q Consensus 541 ~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~ 620 (760)
..|..++.++... +.+++|++.+.++.. ..+|...+.++.+.|+|..|..+... +. .+++.+..
T Consensus 1222 --~ny~rLA~tLvkL-----------ge~q~AIEaarKA~n-~~aWkev~~acve~~Ef~LA~~cgl~-Ii-v~~deLee 1285 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHL-----------GEYQAAVDGARKANS-TRTWKEVCFACVDGKEFRLAQMCGLH-IV-VHADELEE 1285 (1630)
T ss_pred --hHHHHHHHHHHHh-----------CCHHHHHHHHHHhCC-HHHHHHHHHHHhhhhHHHHHHHHHHh-hh-cCHHHHHH
Confidence 3577888888887 788888888888744 57888888888888888888888774 32 33345568
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hc--CCHHHHHHHHHHHHhhCC-----CChHHHHHHHHHH
Q 004336 621 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EY--CDRELTRADLEMVTQLDP-----LRVYPYRYRAAVL 689 (760)
Q Consensus 621 La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~--~~~~~A~~~l~kal~l~p-----~~~~~~~~La~~~ 689 (760)
++..|...|.+++|+.++++++..++....++..++ .| ++..++.+.|...+.+.| .+...|..+..+|
T Consensus 1286 li~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A 1286 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999987776665443 22 466788888988888877 7788899999999
Q ss_pred HHcCCHHHHHHHHHHHHHc------------CCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 004336 690 MDSHKENEAIAELSRAIAF------------KADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 754 (760)
Q Consensus 690 ~~~g~~~eAi~~l~kal~~------------~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r 754 (760)
.+-|+++.|+...-..... .+.++.++.+ ..+|. +....++..+..++.-.-++..+..++.+
T Consensus 1366 ~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1366 DKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 9999999999544433222 5666777766 44444 56677777777777555556666555553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.4e-15 Score=155.12 Aligned_cols=227 Identities=6% Similarity=-0.084 Sum_probs=180.1
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHC---CCHHHHHHHHHHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLN--CPEAAMRSLQLARQHAASDHERLVYEGWIL----YDT---SHCEEGLRKAEES 535 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g--~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~----~~~---g~~eeAl~~~~~a 535 (760)
.+++..+|++..+|+..+.++...| ++++++..+.+++..+|++..+|...++++ ... +++++++..++++
T Consensus 57 ~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~ 136 (306)
T 3dra_A 57 ELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAM 136 (306)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHH
T ss_pred HHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 6777777777777777777777777 888888888888888888888888888888 666 7889999999999
Q ss_pred HhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhc
Q 004336 536 IQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLD--LAADCYSNALKIR 613 (760)
Q Consensus 536 l~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~--eA~~~~~~Al~~~ 613 (760)
++.+|.+ ..+|+..+.++...|.++ +++++++++++.+
T Consensus 137 l~~~pkn----------------------------------------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 137 LSSDPKN----------------------------------------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp HHHCTTC----------------------------------------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHhCCCC----------------------------------------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 9999988 677888888888888887 8999999999877
Q ss_pred ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004336 614 HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 691 (760)
Q Consensus 614 ~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~ 691 (760)
+. .+|...+.+....|+.. .. ..++++++.+.+++..+|.+..+|++++.++..
T Consensus 177 ~~N~sAW~~R~~ll~~l~~~~---------------~~---------~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 177 LKNNSAWSHRFFLLFSKKHLA---------------TD---------NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp TTCHHHHHHHHHHHHSSGGGC---------------CH---------HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccccc---------------hh---------hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 76 78888888877766410 00 013677888888899999999999999999999
Q ss_pred cCCHHH-HHHHHHHHHHcC---CCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHh
Q 004336 692 SHKENE-AIAELSRAIAFK---ADLHLLH-LRAAFHEHTGDVLGALRDCRAALS-VDPNDQEMLELHSRV 755 (760)
Q Consensus 692 ~g~~~e-Ai~~l~kal~~~---p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~-l~P~~~~~l~~~~r~ 755 (760)
.|+..+ ......+++... |.+..+. +.+.++...|+.++|++.|+.+.+ .||-....+....+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 233 FDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp TTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred cCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 998555 445666666655 5555444 668888888999999999999996 899999888876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.3e-15 Score=159.13 Aligned_cols=297 Identities=12% Similarity=-0.017 Sum_probs=201.1
Q ss_pred CChhHHHHHHHHHHHHHh--HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC
Q 004336 361 RSDKTVCFLERLLESAET--DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN 438 (760)
Q Consensus 361 ~~~~~~~lle~l~~~a~~--~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~ 438 (760)
..+.+...+++....... ....+.++..+|.++...|++++|+..+++++...|..........++..+|.++...|+
T Consensus 29 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~ 108 (373)
T 1hz4_A 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108 (373)
T ss_dssp CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence 344455555554443221 234667788999999999999999999999999887766555556678899999999999
Q ss_pred HHHHHHHHhhhccccccCCcCcHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q 004336 439 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--------APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--- 507 (760)
Q Consensus 439 ~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~--- 507 (760)
+++|..++ ++++... |....++..+|.++...|++++|+..+++++...+.
T Consensus 109 ~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 109 LQTAWETQ------------------EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHH------------------HHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHH------------------HHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 99999999 6666653 345677888999999999999999999999998765
Q ss_pred --cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh---HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 508 --DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF---EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 508 --~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~---~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
...++..+|.++...|++++|...+++++.+.+.. ..+.
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~------------------------------------ 214 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI------------------------------------ 214 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH------------------------------------
Confidence 34678899999999999999999999999774332 0000
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH------H
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA------S 650 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~------~ 650 (760)
......++.++...|++++|...+++++...+. ..+..+|.++...|++++|...+++++...+..+ .
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 111122344455666666666666666654321 2445666666666666666666666665543211 1
Q ss_pred HHHH----HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 004336 651 AYEK----RSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR 718 (760)
Q Consensus 651 ~~~~----~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~ 718 (760)
++.. ....|+.++|...+++++.+.+... ....+...| +.....+++.+...|-+.....+
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g-----~~~~~~~~g--~~~~~ll~~~~~~~~~~~~~~~~ 359 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG-----FISHFVIEG--EAMAQQLRQLIQLNTLPELEQHR 359 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-----CCHHHHTTH--HHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-----HHHHHHHcc--HHHHHHHHHHHhCCCCchHHHHH
Confidence 1111 1233666666666666665543211 122344455 67778888888888865544444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.5e-15 Score=154.66 Aligned_cols=226 Identities=11% Similarity=0.042 Sum_probs=194.7
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHcc--CHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHID--NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 475 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g--~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~ 475 (760)
..++|+..++++|.++|++. .+++..+.+....| .+++++.++ .+++..+|++.
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~------taWn~R~~~L~~l~~~~~~eeL~~~------------------~~~L~~nPk~y 103 (306)
T 3dra_A 48 YSERALHITELGINELASHY------TIWIYRFNILKNLPNRNLYDELDWC------------------EEIALDNEKNY 103 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHTCTTSCHHHHHHHH------------------HHHHHHCTTCC
T ss_pred CCHHHHHHHHHHHHHCcHHH------HHHHHHHHHHHHcccccHHHHHHHH------------------HHHHHHCcccH
Confidence 44799999999999999995 99999999999999 999999999 99999999999
Q ss_pred HHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhhcCChHHHH
Q 004336 476 VLYFRQSLLL----LRL---NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE--EGLRKAEESIQMKRSFEAFF 546 (760)
Q Consensus 476 ~~~~~la~~~----~~~---g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~e--eAl~~~~~al~l~p~~~a~~ 546 (760)
.+|+..+.++ ... +++++++..+.++++.+|.+..+|...++++...|.++ ++++.++++++.+|.+
T Consensus 104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N---- 179 (306)
T 3dra_A 104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN---- 179 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC----
Confidence 9999999999 777 89999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhcch--HHH
Q 004336 547 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ------LDLAADCYSNALKIRHT--RAH 618 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~------~~eA~~~~~~Al~~~~~--~a~ 618 (760)
..+|+..+.++...++ ++++++++++++..+|. .+|
T Consensus 180 ------------------------------------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW 223 (306)
T 3dra_A 180 ------------------------------------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTW 223 (306)
T ss_dssp ------------------------------------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHH
Confidence 4555555555555555 88999999999998776 899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHHHcCCH
Q 004336 619 QGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQL---DPLRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 619 ~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l---~p~~~~~~~~La~~~~~~g~~ 695 (760)
+.++.++...|+..++.. ....+++.+ +|.++.++..+|.++.+.|+.
T Consensus 224 ~y~~~ll~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLE-----------------------------EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp HHHHHHHHHTTCCGGGGH-----------------------------HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCChHHHH-----------------------------HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 999999999887533222 122222223 377888899999999999999
Q ss_pred HHHHHHHHHHHH-cCCCcHHHH
Q 004336 696 NEAIAELSRAIA-FKADLHLLH 716 (760)
Q Consensus 696 ~eAi~~l~kal~-~~p~~~~~~ 716 (760)
++|++.|+.+.+ .+|-...++
T Consensus 275 ~~A~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 275 NESRTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHHhccChHHHHHH
Confidence 999999999987 788877766
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-16 Score=150.10 Aligned_cols=144 Identities=9% Similarity=-0.027 Sum_probs=124.9
Q ss_pred HHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 004336 429 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 508 (760)
Q Consensus 429 lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~ 508 (760)
||.++...|++++|+..+ ++++..+|+++..++.+|.+|...|++++|++.|+++++++|++
T Consensus 3 LG~~~~~~~~~e~ai~~~------------------~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~ 64 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASV------------------QGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD 64 (150)
T ss_dssp ----CCCHHHHHHHHHHH------------------HHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHcChHHHHHHHH------------------HHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 677888888999999888 88888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHH
Q 004336 509 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNN 588 (760)
Q Consensus 509 ~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~ 588 (760)
+.+|..+|.++...|++++|+..|+++++++|++ ..++++
T Consensus 65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------------------------------------~~~~~~ 104 (150)
T 4ga2_A 65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ----------------------------------------KDLVLK 104 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC----------------------------------------HHHHHH
Confidence 9999999999999999999999999999999998 788899
Q ss_pred HHHHHHHcCCHHHHHHH-HHHHHhhcch--HHHHHHHHHHHHcCC
Q 004336 589 LGSVYVDCGQLDLAADC-YSNALKIRHT--RAHQGLARVHFLKNN 630 (760)
Q Consensus 589 Lg~~y~~~g~~~eA~~~-~~~Al~~~~~--~a~~~La~~~~~~g~ 630 (760)
+|.+|...|++++|... ++++++++|. .++..++.++...|+
T Consensus 105 la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 105 IAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999877765 5889987776 777788888887775
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8.2e-15 Score=147.97 Aligned_cols=180 Identities=7% Similarity=-0.061 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQ 499 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~ 499 (760)
..+++.+|..+...|++++|+..+ ++++...|.+ ..+++.+|.+|...|++++|+..|+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~------------------~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~ 65 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQL------------------EALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAID 65 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 367889999999999999999999 9999998876 4789999999999999999999999
Q ss_pred HHHHhCCCcHH---HHHHHHHHHHH------------------CCCHHHHHHHHHHHHhhcCCh-HHH---HHHHHHHHc
Q 004336 500 LARQHAASDHE---RLVYEGWILYD------------------TSHCEEGLRKAEESIQMKRSF-EAF---FLKAYALAD 554 (760)
Q Consensus 500 kal~~~p~~~~---a~~~Lg~i~~~------------------~g~~eeAl~~~~~al~l~p~~-~a~---~~la~~l~~ 554 (760)
++++..|++.. +++.+|.++.. .|++++|+..|+++++..|+. .+. ..++.+...
T Consensus 66 ~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 66 RFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 99999998764 78999999876 679999999999999999998 332 222222222
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHcC
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKN 629 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~-----~a~~~La~~~~~~g 629 (760)
. ......+|.+|...|++++|+..|+++++..|. .++..+|.++...|
T Consensus 146 ~---------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 198 (225)
T 2yhc_A 146 L---------------------------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQ 198 (225)
T ss_dssp H---------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred H---------------------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcC
Confidence 1 455678899999999999999999999997654 68999999999999
Q ss_pred CHHHHHHHHHHHHHhccC
Q 004336 630 NKTTAYEEMTKLIKKARN 647 (760)
Q Consensus 630 ~~~~A~~~l~~al~~~~~ 647 (760)
++++|++.++++....|.
T Consensus 199 ~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 199 MNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp CHHHHHHHHHHHHHCCSC
T ss_pred CcHHHHHHHHHHHhhCCC
Confidence 999999999988877763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=156.53 Aligned_cols=123 Identities=12% Similarity=-0.016 Sum_probs=104.5
Q ss_pred hcCCHHHHHHHHHHHHhhC-----CCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 395 LRKEYDEAEHLFEAILTLS-----PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~-----P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
..|++++|+..|++++... ++++ ....++..+|.++...|++++|+.++ .+++.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~------------------~~al~ 71 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHP---DVATMLNILALVYRDQNKYKEAAHLL------------------NDALA 71 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHcccHHHHHHHH------------------HHHHH
Confidence 3457888888888887742 1221 22478999999999999999999999 77776
Q ss_pred h--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Q 004336 470 S--------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAE 533 (760)
Q Consensus 470 ~--------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~--------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~ 533 (760)
. .|..+.++..+|.++...|++++|+..|++++.. +|....++..+|.++...|++++|+..++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 151 (283)
T 3edt_B 72 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYR 151 (283)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5 4667889999999999999999999999999988 46778899999999999999999999999
Q ss_pred HHHhh
Q 004336 534 ESIQM 538 (760)
Q Consensus 534 ~al~l 538 (760)
+++++
T Consensus 152 ~al~~ 156 (283)
T 3edt_B 152 RALEI 156 (283)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-14 Score=146.51 Aligned_cols=175 Identities=8% Similarity=-0.029 Sum_probs=152.0
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..++.+|..++..|+|++|+..|++++...|+.+. ...+++.+|.++...|++++|+..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~---------------- 64 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY---SQQVQLDLIYAYYKNADLPLAQAAI---------------- 64 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT---HHHHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHHHhcCCHHHHHHHH----------------
Confidence 456778888888888999999999999999998741 1268999999999999999999999
Q ss_pred HHHHHHHhCCCcHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCcHHHH---------
Q 004336 463 VIYQMLESDAPKGV---LYFRQSLLLLR------------------LNCPEAAMRSLQLARQHAASDHERL--------- 512 (760)
Q Consensus 463 ~~~~al~~~p~~~~---~~~~la~~~~~------------------~g~~~~Ai~~l~kal~~~p~~~~a~--------- 512 (760)
++++..+|++.. +++.+|.++.. .|++++|+..|+++++..|++..++
T Consensus 65 --~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 65 --DRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL 142 (225)
T ss_dssp --HHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred --HHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 999999998864 89999999886 5799999999999999999986543
Q ss_pred --------HHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHH
Q 004336 513 --------VYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 584 (760)
Q Consensus 513 --------~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~ 584 (760)
..+|.+|...|++++|+..|+++++..|++. . ...
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------------------------~-------------~~~ 185 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ------------------------A-------------TRD 185 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH------------------------H-------------HHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC------------------------c-------------cHH
Confidence 5789999999999999999999999999870 0 047
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
++..+|.+|...|++++|+..++++....|.
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 8899999999999999999999988875443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-16 Score=170.64 Aligned_cols=315 Identities=12% Similarity=0.020 Sum_probs=175.4
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
..+|..+|..++..|++++|++.|.++ +++ .++..++..+...|++++|+.++
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~------~~y~~V~~~ae~~g~~EeAi~yl---------------- 84 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP------SSYMEVVQAANTSGNWEELVKYL---------------- 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCH------HHHHHHHHHHHhCCCHHHHHHHH----------------
Confidence 358999999999999999999999764 333 67788888999999999999988
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+.+.+.. .++.+...++.+|.+.|++.++.+.++. | +..+|..+|..+...|+|++|...|.++
T Consensus 85 --~~ark~~-~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 --QMARKKA-RESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-------
T ss_pred --HHHHHhC-ccchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 5555543 3367788899999999999999988852 4 3469999999999999999999999977
Q ss_pred HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHH
Q 004336 543 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLA 622 (760)
Q Consensus 543 ~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La 622 (760)
..|..+|.++... |.+++|++.+.++. .+.+|..++.++...|+++.|..+... +...|.. ...+.
T Consensus 149 ~n~~~LA~~L~~L-----------g~yq~AVea~~KA~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~-l~~lv 214 (449)
T 1b89_A 149 SNFGRLASTLVHL-----------GEYQAAVDGARKAN-STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE-LEELI 214 (449)
T ss_dssp TCHHHHHHHHHTT-----------TCHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH-HHHHH
T ss_pred hhHHHHHHHHHHh-----------ccHHHHHHHHHHcC-CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh-HHHHH
Confidence 3578999999998 99999999999995 478999999999999999999888775 3344443 44688
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hc--CCHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHH
Q 004336 623 RVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EY--CDRELTRADLEMVTQLDP-----LRVYPYRYRAAVLMD 691 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~--~~~~~A~~~l~kal~l~p-----~~~~~~~~La~~~~~ 691 (760)
..|.+.|++++|+.++++++..++....++..++ +| ++..+.++.|...+.+.| .++..|..+..+|..
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998777766653 22 455677777777777777 788899999999999
Q ss_pred cCCHHHHHHHHHHHHHc------------CCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 004336 692 SHKENEAIAELSRAIAF------------KADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 756 (760)
Q Consensus 692 ~g~~~eAi~~l~kal~~------------~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~ 756 (760)
.++++.|+...-..... ++.+..++.+ ..+|. +....++..+..++.-.-++..+...+.+..
T Consensus 295 ~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 295 YEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp TTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred hchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 99999999866554433 4556666666 34444 5667789999999865556677777766654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-13 Score=143.51 Aligned_cols=251 Identities=13% Similarity=0.027 Sum_probs=181.4
Q ss_pred hcCCHH-HHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC----------HHHHHHHHhhhccccccCCcCcHHH
Q 004336 395 LRKEYD-EAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN----------WTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 395 ~~g~~~-eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~----------~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..|++. +|+.++++++..+|++. .+|+..+.+....+. +++++.++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~y------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~----------------- 97 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFA------TLWNCRREVLQHLETEKSPEESAALVKAELGFL----------------- 97 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCH------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-----------------
T ss_pred HcCCCCHHHHHHHHHHHHHCchhH------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHH-----------------
Confidence 345665 89999999999999995 889989888877765 56777777
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhcC
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNC--PEAAMRSLQLARQHAASDHERLVYEGWILYDTSH-CEEGLRKAEESIQMKR 540 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~--~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~-~eeAl~~~~~al~l~p 540 (760)
..++..+|.+..+|+..+.++...|+ +++++.++.++++.+|.+..+|.+.+++....|. ++++++.+.++++.+|
T Consensus 98 -~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p 176 (331)
T 3dss_A 98 -ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 176 (331)
T ss_dssp -HHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred -HHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999994 8999999999999999999999999999999999 6999999999999999
Q ss_pred Ch-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HH
Q 004336 541 SF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RA 617 (760)
Q Consensus 541 ~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a 617 (760)
.+ .+|...+.++.....+.... . .+ -...+.++++++++.+++..+|. .+
T Consensus 177 ~N~SAW~~R~~ll~~l~~~~~~~--------------------~-----~~--~~~~~~~~eEle~~~~ai~~~P~d~Sa 229 (331)
T 3dss_A 177 SNYSSWHYRSCLLPQLHPQPDSG--------------------P-----QG--RLPENVLLKELELVQNAFFTDPNDQSA 229 (331)
T ss_dssp CCHHHHHHHHHHHHHHSCCC---------------------------------CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccc--------------------c-----cc--ccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99 66666666655431110000 0 00 00114578899999999987776 67
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH---HcC
Q 004336 618 HQGLARVHFLK-NNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM---DSH 693 (760)
Q Consensus 618 ~~~La~~~~~~-g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~---~~g 693 (760)
|+.+..++... |... ....+ .+..+++++.+.++++++|++...+..++.+.. ..|
T Consensus 230 W~Y~r~ll~~~~~~~~---------------~~~~~-----~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~ 289 (331)
T 3dss_A 230 WFYHRWLLGAGSGRCE---------------LSVEK-----STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 289 (331)
T ss_dssp HHHHHHHHHSSSCGGG---------------CCHHH-----HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHhccCccc---------------cchHH-----HHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccc
Confidence 76554444433 3100 00000 012356666666777777766444433333221 356
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHH
Q 004336 694 KENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 694 ~~~eAi~~l~kal~~~p~~~~~~ 716 (760)
..++....+.+.++++|.....+
T Consensus 290 ~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 290 YEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp THHHHHHHHHHHHHHCGGGHHHH
T ss_pred cHHHHHHHHHHHHHhCcchhhHH
Confidence 77788888888888888776555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-14 Score=152.21 Aligned_cols=243 Identities=12% Similarity=0.007 Sum_probs=180.5
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
..|++++|..+++++.+..+... +...++++.|..++ .+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~---------------~~~~~~~~~A~~~~------------------~~-------- 41 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF---------------MKWKPDYDSAASEY------------------AK-------- 41 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS---------------SSCSCCHHHHHHHH------------------HH--------
T ss_pred ccchHHHHHHHHHHHHHHccccc---------------cCCCCCHHHHHHHH------------------HH--------
Confidence 35699999999999988776421 00147888888887 43
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 548 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~l 548 (760)
.|.+|...|++++|+..|++++++.+.. ..++.++|.+|..+|++++|+..|++++.+.+..
T Consensus 42 ------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~------ 109 (307)
T 2ifu_A 42 ------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN------ 109 (307)
T ss_dssp ------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT------
T ss_pred ------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc------
Confidence 3678899999999999999999886432 4678899999999999999999999999875433
Q ss_pred HHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--------HHHHH
Q 004336 549 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQG 620 (760)
Q Consensus 549 a~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--------~a~~~ 620 (760)
+.... .+.++.++|.+|.. |++++|+.+|++++++.+. .++.+
T Consensus 110 ------------------g~~~~----------~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 110 ------------------GTPDT----------AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160 (307)
T ss_dssp ------------------TCHHH----------HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------CCHHH----------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 11111 05788999999999 9999999999999986432 68899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 004336 621 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700 (760)
Q Consensus 621 La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~ 700 (760)
+|.+|...|++++|+..|+++++..+.....+. ....+..+|.++...|++++|+.
T Consensus 161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT------------------------CYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------------------------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH------------------------HHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999888763321110 12356778899999999999999
Q ss_pred HHHHHHHcCCCcHH---HH-H--HHHHHHHcCCHHHHHHH--HHHHHhcCCCc
Q 004336 701 ELSRAIAFKADLHL---LH-L--RAAFHEHTGDVLGALRD--CRAALSVDPND 745 (760)
Q Consensus 701 ~l~kal~~~p~~~~---~~-l--~a~~~~~~g~~~~A~~~--~~~aL~l~P~~ 745 (760)
.|++++ ..|+... .. + ....+ ..|+.+.+... +..+..++|..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~~~~~~~~ld~~~ 267 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRSPLVTYMDNDY 267 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHHTTSHHHHTSCHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHHHhCchhhhhhHHH
Confidence 999999 8886542 11 1 13334 34776555442 33444454433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-15 Score=143.99 Aligned_cols=163 Identities=10% Similarity=0.012 Sum_probs=140.4
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
+...|..++..|++++|+..|+++++.+|++. .++..+|.++...|++++|+..+ +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~la~~~~~~g~~~~A~~~~------------------~ 64 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRG------DVKLAKADCLLETKQFELAQELL------------------A 64 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH------HHHHHHHHHHHHTTCHHHHHHHH------------------T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHHCCCHHHHHHHH------------------H
Confidence 45566677777799999999999999999996 99999999999999999999999 8
Q ss_pred HHHHhCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 466 QMLESDAPKGVLYFRQSLLL-LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~-~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
+++..+| ++..+..++.+. ...+...+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++
T Consensus 65 ~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-- 141 (176)
T 2r5s_A 65 TIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA-- 141 (176)
T ss_dssp TCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT--
T ss_pred HhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--
Confidence 8888889 777766666543 333445568999999999999999999999999999999999999999999999876
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
....++.++|.++...|++++|+..|++++.
T Consensus 142 ------------------------------------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 142 ------------------------------------QDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ------------------------------------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ------------------------------------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 0035788889999999999999999998864
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.3e-15 Score=133.69 Aligned_cols=121 Identities=13% Similarity=0.075 Sum_probs=112.3
Q ss_pred HHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004336 408 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 487 (760)
Q Consensus 408 ~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~ 487 (760)
++..++|+.. .++..+|..+.+.|++++|+..+ .+++..+|.++.+++++|.+|..
T Consensus 4 r~a~inP~~a------~~~~~~G~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~~~~~~~~ 59 (126)
T 4gco_A 4 RLAYINPELA------QEEKNKGNEYFKKGDYPTAMRHY------------------NEAVKRDPENAILYSNRAACLTK 59 (126)
T ss_dssp ---CCCHHHH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHCHHHH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHhhHHHh
Confidence 3445788874 89999999999999999999999 99999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHH
Q 004336 488 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYAL 552 (760)
Q Consensus 488 ~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l 552 (760)
+|++++|+..|+++++++|++..+++.+|.++..+|++++|+..|+++++++|++ +++..++.++
T Consensus 60 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 60 LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999 8888877653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-14 Score=131.08 Aligned_cols=117 Identities=14% Similarity=0.012 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
.++.|.++...|..++.+|+|++|+..|+++++++|+++ .++..+|.++...|++++|+..+
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~------------ 70 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA------ILYSNRAACLTKLMEFQRALDDC------------ 70 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHhhHHHhhccHHHHHHHH------------
Confidence 467888999999999999999999999999999999996 99999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 519 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~ 519 (760)
.+++..+|+++.+++++|.++..+|++++|+..|+++++++|++.+++..++.++
T Consensus 71 ------~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 71 ------DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp ------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred ------HHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999998764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-16 Score=169.33 Aligned_cols=286 Identities=13% Similarity=-0.027 Sum_probs=140.6
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 474 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~ 474 (760)
..|+.++|.+.+++. +++ .+|..+|.++...|++++|+..+ .+ ..+
T Consensus 15 ~~~~ld~A~~fae~~-----~~~------~vWs~La~A~l~~g~~~eAIdsf------------------ik-----a~D 60 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEP------AVWSQLAKAQLQKGMVKEAIDSY------------------IK-----ADD 60 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CCh------HHHHHHHHHHHHcCCHHHHHHHH------------------Hc-----CCC
Confidence 445899999999998 333 67889999999999999999988 43 246
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
+..+...+..+...|++++|+.+++.+++..++ +.+...++.+|.+.|+++++.+.++ .|+..+|..+|..+..
T Consensus 61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~ 134 (449)
T 1b89_A 61 PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYD 134 (449)
T ss_dssp -------------------------------------------------CHHHHTTTTT-----CC--------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHH
Confidence 668889999999999999999999999986443 7778899999999999999988885 3555899999999999
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHH
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTA 634 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A 634 (760)
. |.+++|...|... ..|..+|.++...|+|++|++.|+++ +.+.+|.....++...|+++.|
T Consensus 135 ~-----------g~yeeA~~~Y~~a----~n~~~LA~~L~~Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 135 E-----------KMYDAAKLLYNNV----SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp -------------CTTTHHHHHHHT----TCHHHHHHHHHTTTCHHHHHHHHHHH---TCHHHHHHHHHHHHHTTCHHHH
T ss_pred c-----------CCHHHHHHHHHHh----hhHHHHHHHHHHhccHHHHHHHHHHc---CCchhHHHHHHHHHHcCcHHHH
Confidence 9 9999999999876 68899999999999999999999999 4568999999999999999999
Q ss_pred HHHHHHHHHhccCcH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCC-
Q 004336 635 YEEMTKLIKKARNNA-SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD--SHKENEAIAELSRAIAFKA- 710 (760)
Q Consensus 635 ~~~l~~al~~~~~~~-~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~--~g~~~eAi~~l~kal~~~p- 710 (760)
......++ ..|+.. .+-......|++++|+..+++++.+++.....+..+|.+|.+ .++..++++.|.+.+.+.|
T Consensus 197 ~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~ 275 (449)
T 1b89_A 197 QMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 275 (449)
T ss_dssp HHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHH
T ss_pred HHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHH
Confidence 87777643 555332 222223345999999999999999999999999999988865 4577788888877766665
Q ss_pred ----CcHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 004336 711 ----DLHLLHLR-AAFHEHTGDVLGALRDCRAAL 739 (760)
Q Consensus 711 ----~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL 739 (760)
+...+|.. ..+|.+.++++.|+...-+..
T Consensus 276 ~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 276 LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 44445544 677778899999988655543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=151.26 Aligned_cols=168 Identities=15% Similarity=0.081 Sum_probs=153.7
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
....++.+|..+...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+.++
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~la~~~~~~g~~~~A~~~l--------------- 174 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG------EIGLLLAETLIALNRSEDAEAVL--------------- 174 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch------hHHHHHHHHHHHCCCHHHHHHHH---------------
Confidence 445677888888888899999999999999999996 99999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
++++..+|+........+..+...++.++|+..|++++..+|++..+++.+|.++...|++++|+..|+++++.+|+
T Consensus 175 ---~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 175 ---XTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp ---TTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---HhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 88888999888888888888999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
+ ....++.++|.++...|+.++|...|++++.
T Consensus 252 ~--------------------------------------~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 252 A--------------------------------------ADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp G--------------------------------------GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred c--------------------------------------ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 7 1146788899999999999999999998875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=140.09 Aligned_cols=162 Identities=10% Similarity=0.015 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..+..+|..+...|++++|+..+ ++++..+|+++.+++.+|.++...|++++|+..|++++.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~------------------~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVI------------------QTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHH------------------HTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 55677888888899999998888 888888899999999999999999999999999999988
Q ss_pred hCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 504 HAASDHERLVYEGWILY-DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~-~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
..| ++..+..++.+.. ..+...+|+..++++++.+|++
T Consensus 69 ~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~---------------------------------------- 107 (176)
T 2r5s_A 69 EYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDN---------------------------------------- 107 (176)
T ss_dssp GGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC----------------------------------------
T ss_pred ccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC----------------------------------------
Confidence 888 7776666665533 3334456788899999888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAYEEMTKLIKK 644 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~~~l~~al~~ 644 (760)
..+++++|.++...|++++|+..|+++++.+|. .++..+|.++...|+.++|+..|++++..
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 889999999999999999999999999998764 58999999999999999999999988753
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-14 Score=163.95 Aligned_cols=163 Identities=13% Similarity=-0.029 Sum_probs=133.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH
Q 004336 396 RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 475 (760)
Q Consensus 396 ~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~ 475 (760)
.|++++|+..|+++++.+|++. .++..+|.++...|++++|+.++ +++++.+|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~------------------~~al~~~p~~~ 57 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF------VAWLMLADAELGMGDTTAGEMAV------------------QRGLALHPGHP 57 (568)
T ss_dssp -------------------CCH------HHHHHHHHHHHHHTCHHHHHHHH------------------HHHHTTSTTCH
T ss_pred CccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCH
Confidence 3689999999999999999995 89999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcc
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 555 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~ 555 (760)
.+++.+|.+|...|++++|++.|+++++.+|++..++.++|.++...|++++|+..|+++++.+|++
T Consensus 58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------- 124 (568)
T 2vsy_A 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------------- 124 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhcch--HHHHHHH
Q 004336 556 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC---GQLDLAADCYSNALKIRHT--RAHQGLA 622 (760)
Q Consensus 556 ~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~---g~~~eA~~~~~~Al~~~~~--~a~~~La 622 (760)
..++.++|.++... |++++|...|+++++.+|. ..+..++
T Consensus 125 ---------------------------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 125 ---------------------------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp ---------------------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred ---------------------------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 78888999999999 9999999999999998776 5555555
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.1e-14 Score=146.46 Aligned_cols=163 Identities=10% Similarity=0.033 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.++..+|..+...|++++|+..+ ++++..+|+++.+++.+|.++...|++++|+..|++++.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~------------------~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLL------------------XDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred hhHHHHHHHHHhCCCHHHHHHHH------------------HHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 88899999999999999999999 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 583 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~ 583 (760)
.+|+....+...+..+...++.++|+..+++++..+|++ .
T Consensus 180 ~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~----------------------------------------~ 219 (287)
T 3qou_A 180 QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED----------------------------------------A 219 (287)
T ss_dssp GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC----------------------------------------H
T ss_pred hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc----------------------------------------H
Confidence 999877777888888999999999999999999999999 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAYEEMTKLIKK 644 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~~~l~~al~~ 644 (760)
.+++++|.++...|++++|+..|+++++.+|. .++.+++.++...|+.++|...|++++..
T Consensus 220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 89999999999999999999999999997664 68999999999999999999999987753
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=137.71 Aligned_cols=114 Identities=5% Similarity=-0.071 Sum_probs=107.5
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
++++..+|+++.+++.+|.++.+.|++++|+..|++++.++|+++.+|.++|.++...|++++|+..|+++++++|++
T Consensus 26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-- 103 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-- 103 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC--
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC--
Confidence 778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHH
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAH 618 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~ 618 (760)
+.+++++|.+|...|++++|+.+|+++++..|+..+
T Consensus 104 --------------------------------------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~ 139 (151)
T 3gyz_A 104 --------------------------------------YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139 (151)
T ss_dssp --------------------------------------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred --------------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH
Confidence 788999999999999999999999999998877543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-14 Score=150.45 Aligned_cols=209 Identities=12% Similarity=0.046 Sum_probs=161.2
Q ss_pred ccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 004336 436 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR-LNCPEAAMRSLQLARQHAASDHERLVY 514 (760)
Q Consensus 436 ~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~Ai~~l~kal~~~p~~~~a~~~ 514 (760)
.|++++|..++ +++....+.. ++. .+++++|+..|.++
T Consensus 4 ~~~~~eA~~~~------------------~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a------------- 42 (307)
T 2ifu_A 4 AQKISEAHEHI------------------AKAEKYLKTS----------FMKWKPDYDSAASEYAKA------------- 42 (307)
T ss_dssp HHHHHHHHHHH------------------HHHHHHHCCC----------SSSCSCCHHHHHHHHHHH-------------
T ss_pred cchHHHHHHHH------------------HHHHHHcccc----------ccCCCCCHHHHHHHHHHH-------------
Confidence 56777888888 6666555432 112 57889998888876
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHH
Q 004336 515 EGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV 594 (760)
Q Consensus 515 Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~ 594 (760)
|.+|...|++++|+..|++++.+.+.. +....+ +.++.++|.+|.
T Consensus 43 -~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------~~~~~~----------a~~~~~lg~~~~ 87 (307)
T 2ifu_A 43 -AVAFKNAKQLEQAKDAYLQEAEAHANN------------------------RSLFHA----------AKAFEQAGMMLK 87 (307)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHHHHT------------------------TCHHHH----------HHHHHHHHHHHH
T ss_pred -HHHHHHcCCHHHHHHHHHHHHHHHHHc------------------------CCHHHH----------HHHHHHHHHHHH
Confidence 678889999999999999999765433 111111 578899999999
Q ss_pred HcCCHHHHHHHHHHHHhhcc-----h---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHH
Q 004336 595 DCGQLDLAADCYSNALKIRH-----T---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRA 666 (760)
Q Consensus 595 ~~g~~~eA~~~~~~Al~~~~-----~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~ 666 (760)
..|++++|+.+|++++++.+ . .++.++|.+|.. |++++|+..|+++++..+..+. ..
T Consensus 88 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~----------~~---- 152 (307)
T 2ifu_A 88 DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER----------LR---- 152 (307)
T ss_dssp HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC----------HH----
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC----------hh----
Confidence 99999999999999998632 1 688899999988 9999999999999887663211 00
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 004336 667 DLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH------LLHLR-AAFHEHTGDVLGALRDCRAAL 739 (760)
Q Consensus 667 ~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~------~~~l~-a~~~~~~g~~~~A~~~~~~aL 739 (760)
....++.++|.++..+|++++|+..|++++.+.|+.. ..++. +.++..+|++++|+..|++++
T Consensus 153 ----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 153 ----------QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp ----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 0135678899999999999999999999998865432 12333 778888899999999999999
Q ss_pred hcCCCcH
Q 004336 740 SVDPNDQ 746 (760)
Q Consensus 740 ~l~P~~~ 746 (760)
++|+..
T Consensus 223 -~~p~~~ 228 (307)
T 2ifu_A 223 -SIPGFS 228 (307)
T ss_dssp -TSTTST
T ss_pred -CCCCCC
Confidence 999765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=137.90 Aligned_cols=121 Identities=9% Similarity=-0.105 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
++-.+-..+++++.++|++. .+++.+|.++...|++++|+.++ ++++..+|+++.+
T Consensus 17 ~~~~~~~~l~~al~l~p~~~------~~~~~lg~~~~~~g~~~eA~~~~------------------~~al~~~P~~~~~ 72 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMM------DDIYSYAYDFYNKGRIEEAEVFF------------------RFLCIYDFYNVDY 72 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHH
T ss_pred HHHHCCCCHHHHhCCCHHHH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCHHH
Confidence 33334466788899999995 99999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
|+++|.++...|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|++++++.|+.
T Consensus 73 ~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 73 IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999988
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-12 Score=136.40 Aligned_cols=229 Identities=10% Similarity=-0.011 Sum_probs=187.8
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNC----------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSH--CEEGLRKA 532 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~----------~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~--~eeAl~~~ 532 (760)
.+++..+|++..+|+..+.++...+. +++++..+..++..+|.+..+|...++++...|+ +++++..+
T Consensus 54 ~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 133 (331)
T 3dss_A 54 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 133 (331)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHH
Confidence 99999999999999999999988776 6899999999999999999999999999999994 89999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 004336 533 EESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ-LDLAADCYSNALK 611 (760)
Q Consensus 533 ~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~-~~eA~~~~~~Al~ 611 (760)
.++++.+|.+ ..+|+..+.+....|. ++++++++.++++
T Consensus 134 ~k~l~~dprN----------------------------------------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 134 ARFLEADERN----------------------------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp HHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCC----------------------------------------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 9999999999 6778888888888888 6999999999999
Q ss_pred hcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 004336 612 IRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVL 689 (760)
Q Consensus 612 ~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~ 689 (760)
.+|. .+|..++.+....+....+- .. .....+.++++++.+.+++..+|++..+|+++..++
T Consensus 174 ~~p~N~SAW~~R~~ll~~l~~~~~~~-----------~~-----~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 174 RNFSNYSSWHYRSCLLPQLHPQPDSG-----------PQ-----GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp HCSCCHHHHHHHHHHHHHHSCCC----------------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHhhhccccc-----------cc-----cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8776 89999999888774321110 00 000012357888999999999999999998887777
Q ss_pred HHc-----------CCHHHHHHHHHHHHHcCCCcHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 690 MDS-----------HKENEAIAELSRAIAFKADLHLLHLRAAFH----EHTGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 690 ~~~-----------g~~~eAi~~l~kal~~~p~~~~~~l~a~~~----~~~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
... +.++++++.+.++++..|++.-..+....+ ...|..++....+.+.+++||....-.
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHH
Confidence 766 568999999999999999985333332222 234888999999999999999877544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=158.92 Aligned_cols=162 Identities=11% Similarity=0.024 Sum_probs=134.6
Q ss_pred ccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 004336 436 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE 515 (760)
Q Consensus 436 ~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~L 515 (760)
.|++++|+.++ +++++.+|++..+++.+|.++...|++++|++.|+++++.+|++..++..+
T Consensus 2 ~g~~~~A~~~~------------------~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 63 (568)
T 2vsy_A 2 TADGPRELLQL------------------RAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63 (568)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHH
T ss_pred CccHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 36778888888 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH
Q 004336 516 GWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD 595 (760)
Q Consensus 516 g~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~ 595 (760)
|.++..+|++++|+..|+++++++|++ ..++.++|.+|..
T Consensus 64 g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------------------------~~~~~~la~~~~~ 103 (568)
T 2vsy_A 64 GRVRWTQQRHAEAAVLLQQASDAAPEH----------------------------------------PGIALWLGHALED 103 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCC----------------------------------------HHHHHHHHHHHHH
Confidence 999999999999999999999999998 7899999999999
Q ss_pred cCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHc---CCHHHHHHHHHHHHHhccCcHHHHHHH
Q 004336 596 CGQLDLAADCYSNALKIRHT--RAHQGLARVHFLK---NNKTTAYEEMTKLIKKARNNASAYEKR 655 (760)
Q Consensus 596 ~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~---g~~~~A~~~l~~al~~~~~~~~~~~~~ 655 (760)
.|++++|+..|+++++.+|. .++.++|.++... |++++|.+.++++++..|.....+..+
T Consensus 104 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 104 AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence 99999999999999998776 8999999999999 999999999999999998765555444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-13 Score=133.06 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=130.4
Q ss_pred HHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHH
Q 004336 401 EAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 480 (760)
Q Consensus 401 eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~ 480 (760)
+|+.+|+++.+. .++ .+++.+|.++...+++++|+.++ ++++.. .++.++++
T Consensus 4 eA~~~~~~aa~~--g~~------~a~~~lg~~~~~~~~~~~A~~~~------------------~~a~~~--g~~~a~~~ 55 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDR------RAQYYLADTWVSSGDYQKAEYWA------------------QKAAAQ--GDGDALAL 55 (212)
T ss_dssp CTTHHHHHHHHT--TCH------HHHHHHHHHHHHHTCHHHHHHHH------------------HHHHHT--TCHHHHHH
T ss_pred hHHHHHHHHHHC--CCH------HHHHHHHHHHhcCCCHHHHHHHH------------------HHHHHc--CCHHHHHH
Confidence 466777777654 443 77777888887788888888777 666653 56777788
Q ss_pred HHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhcCC--hHHHHHHHH
Q 004336 481 QSLLLLRLN----CPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRS--FEAFFLKAY 550 (760)
Q Consensus 481 la~~~~~~g----~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~~~~~al~l~p~--~~a~~~la~ 550 (760)
+|.+|.. + ++++|+.+|+++.+ +.++.++++||.+|.. .+++++|+.+|+++.+..|. +
T Consensus 56 lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~-------- 124 (212)
T 3rjv_A 56 LAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA-------- 124 (212)
T ss_dssp HHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH--------
T ss_pred HHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch--------
Confidence 8887777 6 78888888888754 4677778888888776 77888888888888777663 2
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh-cchHHHHHHHHHH
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKI-RHTRAHQGLARVH 625 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~-~~~~a~~~La~~~ 625 (760)
+.+++++|.+|.. .+++++|+.+|+++.+. +...++++||.+|
T Consensus 125 --------------------------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 125 --------------------------------VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMF 172 (212)
T ss_dssp --------------------------------HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5677778888877 77888888888888887 5557888888888
Q ss_pred HHc-C-----CHHHHHHHHHHHHHhcc
Q 004336 626 FLK-N-----NKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 626 ~~~-g-----~~~~A~~~l~~al~~~~ 646 (760)
... | ++++|+.+|+++++...
T Consensus 173 ~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 173 QQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 764 3 78888888887777654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-13 Score=120.37 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=127.2
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
.+++.+|..+...|++++|+..|++++..+|++. .++..+|.++...|++++|..++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~----------------- 58 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA------EAWYNLGNAYYKQGDYDEAIEYY----------------- 58 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH-----------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch------hHHHHHHHHHHHhcCHHHHHHHH-----------------
Confidence 4577888888889999999999999999999885 88899999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.+++...|.+...++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++..+|+
T Consensus 59 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 59 -QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp -HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred -HHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998886
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=130.79 Aligned_cols=172 Identities=13% Similarity=0.026 Sum_probs=124.8
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS----HCEEGLRKAEESI 536 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g----~~eeAl~~~~~al 536 (760)
+..++++... .++.+++.+|.+|...+++++|+.+|+++.+. .++.++++||.+|.. + ++++|+.+|+++.
T Consensus 6 ~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 6 GSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp THHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344777664 67888888888888888888888888888764 577888888888887 6 7888888888885
Q ss_pred hhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 004336 537 QMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKI 612 (760)
Q Consensus 537 ~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~ 612 (760)
+ +.+ +.+++++|.+|.. .+++++|+.+|+++.+.
T Consensus 81 ~--~g~----------------------------------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 81 E--AGS----------------------------------------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp H--TTC----------------------------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred H--CCC----------------------------------------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 3 344 5677777777776 78888888888888887
Q ss_pred cc----hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 004336 613 RH----TRAHQGLARVHFL----KNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRY 684 (760)
Q Consensus 613 ~~----~~a~~~La~~~~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~ 684 (760)
++ ..++++||.+|.. .+++++|+.+|+ ++.+. |.++.++++
T Consensus 119 ~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~------------------------------~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 119 SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK------------------------------GSSSL-SRTGYAEYW 167 (212)
T ss_dssp TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH------------------------------HHHHT-SCTTHHHHH
T ss_pred CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH------------------------------HHHHc-CCCHHHHHH
Confidence 77 5788888888877 555544444444 44444 345556777
Q ss_pred HHHHHHHc-C-----CHHHHHHHHHHHHHcCC
Q 004336 685 RAAVLMDS-H-----KENEAIAELSRAIAFKA 710 (760)
Q Consensus 685 La~~~~~~-g-----~~~eAi~~l~kal~~~p 710 (760)
+|.+|... | ++++|+.+|+++.+...
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77777654 2 77777777777776543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=143.10 Aligned_cols=197 Identities=11% Similarity=-0.057 Sum_probs=166.3
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHH-------HHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 395 LRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLH-------MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~l-------g~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
..+++.+|...|.+++..+|+.. ++|..+ +.++...++..+++..+ .+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~------Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~------------------~~~ 73 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESAC------DAWIGRIRCGDTDRVTLFRAWYSRRNFGQL------------------SGS 73 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHTTCCCHHHHHHHHHTGGGTTHH------------------HHT
T ss_pred cCCCHHHHHHHHHHHHHhChhhh------HHHHhHHHccCCcHHHHHHHHHHHHHHHHH------------------HHH
Confidence 45799999999999999999996 888888 77777777777776666 777
Q ss_pred HHhCCCcH---------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Q 004336 468 LESDAPKG---------------------VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 468 l~~~p~~~---------------------~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~e 526 (760)
+++.|... +++..++.++...|++++|.+.|+..+...|++. +++.+|.+++..|+++
T Consensus 74 l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~ 152 (282)
T 4f3v_A 74 VQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWT 152 (282)
T ss_dssp TTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHH
T ss_pred hcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHH
Confidence 77666543 3445588899999999999999999999999888 9999999999999999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004336 527 EGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCY 606 (760)
Q Consensus 527 eAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~ 606 (760)
+|+..|+++....+.. ....+++++|.++...|++++|+.+|
T Consensus 153 dA~~~l~~a~~~~d~~--------------------------------------~~~~a~~~LG~al~~LG~~~eAl~~l 194 (282)
T 4f3v_A 153 DVIDQVKSAGKWPDKF--------------------------------------LAGAAGVAHGVAAANLALFTEAERRL 194 (282)
T ss_dssp HHHHHHTTGGGCSCHH--------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhccCCcc--------------------------------------cHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999998776542111 00458899999999999999999999
Q ss_pred HHHHhhc--ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH
Q 004336 607 SNALKIR--HT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 655 (760)
Q Consensus 607 ~~Al~~~--~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 655 (760)
++++.-. |. .+++.+|.++..+|+.++|...|++++..+|. ..+...+
T Consensus 195 ~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 195 TEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 9998643 32 78999999999999999999999999999998 7766665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-15 Score=159.98 Aligned_cols=188 Identities=11% Similarity=0.094 Sum_probs=154.6
Q ss_pred HHHhcCCHHHHHHHHHH----HHhhCCCCcchhchHHHHHHHHHHHH------------HccCHHHHHHHHhhhcccccc
Q 004336 392 VRLLRKEYDEAEHLFEA----ILTLSPDYRMFEGRVAASQLHMLVRE------------HIDNWTIADCWLQLYDRWSSV 455 (760)
Q Consensus 392 ~~l~~g~~~eA~~~~~~----aL~l~P~~~~~~~~~~a~~~lg~l~~------------~~g~~~~A~~~l~l~~~~~~~ 455 (760)
++...+.+++|+..++. ++.+.|++. ++. .|.... ..+++++|+..+
T Consensus 74 ~~~~~~~~e~al~~~~~Ge~~~l~i~p~~a--yg~------~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~--------- 136 (336)
T 1p5q_A 74 NLDLPYGLERAIQRMEKGEHSIVYLKPSYA--FGS------VGKEKFQIPPNAELKYELHLKSFEKAKESW--------- 136 (336)
T ss_dssp GGTCCHHHHHHHTTCCTTCEEEEEECTTTT--TTT------TCBGGGTBCSSCCEEEEEEEEEEECCCCGG---------
T ss_pred ccccchHHHHHHhcCCCCCeEEEEECCccc--cCc------CCCCccCCCCCCeEEEEEEEeecccccchh---------
Confidence 33344578888888888 888888863 111 111110 122333333333
Q ss_pred CCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHH
Q 004336 456 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---------------HERLVYEGWILY 520 (760)
Q Consensus 456 ~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~---------------~~a~~~Lg~i~~ 520 (760)
.+++..+|.++.+++.+|.++...|++++|+..|++++++.|.+ ..++.++|.++.
T Consensus 137 ---------~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 137 ---------EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp ---------GCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777789999999999999999999999999999999999998 699999999999
Q ss_pred HCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHH
Q 004336 521 DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLD 600 (760)
Q Consensus 521 ~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~ 600 (760)
.+|++++|+..|+++++++|++ ..+++++|.+|...|+++
T Consensus 208 ~~g~~~~A~~~~~~al~~~p~~----------------------------------------~~a~~~lg~~~~~~g~~~ 247 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELDSNN----------------------------------------EKGLSRRGEAHLAVNDFE 247 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCc----------------------------------------HHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999999 789999999999999999
Q ss_pred HHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHH-HHHHHHHHHhc
Q 004336 601 LAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTA-YEEMTKLIKKA 645 (760)
Q Consensus 601 eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A-~~~l~~al~~~ 645 (760)
+|+..|+++++++|. .++..++.++...|++++| ...|++++...
T Consensus 248 ~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998876 8999999999999999998 55677666543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-14 Score=147.06 Aligned_cols=194 Identities=10% Similarity=-0.017 Sum_probs=137.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
|.++..++.+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------- 71 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--------- 71 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------
Confidence 56788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchH--HHHHHHHHHHHcC
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTR--AHQGLARVHFLKN 629 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~--a~~~La~~~~~~g 629 (760)
..+++++|.+|...|++++|+..|+++++.+|.. .+...........
T Consensus 72 -------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 120 (281)
T 2c2l_A 72 -------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (281)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH
Confidence 7888999999999999999999999999876641 1111111111110
Q ss_pred CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 004336 630 NKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 709 (760)
Q Consensus 630 ~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~ 709 (760)
+ +...........|.+......++..+ .|++++|++.++++++..
T Consensus 121 ---~------------------------------~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~ 165 (281)
T 2c2l_A 121 ---K------------------------------KKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGH 165 (281)
T ss_dssp ---H------------------------------HHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTT
T ss_pred ---H------------------------------HHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccc
Confidence 0 11111112234455555555555544 567777777777777777
Q ss_pred CCcHHHHHH-HHHH-HHcCCHHHHHHHHHHHHh
Q 004336 710 ADLHLLHLR-AAFH-EHTGDVLGALRDCRAALS 740 (760)
Q Consensus 710 p~~~~~~l~-a~~~-~~~g~~~~A~~~~~~aL~ 740 (760)
|++..+... ..++ ...+.+++|.+.|.++.+
T Consensus 166 p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 166 EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 766544422 2222 223566677777776655
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-12 Score=134.59 Aligned_cols=226 Identities=12% Similarity=-0.003 Sum_probs=170.1
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHhhcCC
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLN-CPEAAMRSLQLARQHAASDHERLVYEGWILYDT-S-HCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g-~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~-g-~~eeAl~~~~~al~l~p~ 541 (760)
.+++..+|++..+|+..+.++...| .+++++..+++++..+|++..+|...++++... + ++++++..++++++.+|.
T Consensus 78 ~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk 157 (349)
T 3q7a_A 78 EIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK 157 (349)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT
T ss_pred HHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999 599999999999999999999999999999998 8 999999999999999999
Q ss_pred h-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhh
Q 004336 542 F-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLD--------LAADCYSNALKI 612 (760)
Q Consensus 542 ~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~--------eA~~~~~~Al~~ 612 (760)
+ .+|...+ .+....|.++ +++++++++++.
T Consensus 158 Ny~AW~~R~-----------------------------------------wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 158 NYHTWAYLH-----------------------------------------WLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp CHHHHHHHH-----------------------------------------HHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-----------------------------------------HHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 9 5554444 4444444443 889999999987
Q ss_pred cch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 004336 613 RHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 690 (760)
Q Consensus 613 ~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~ 690 (760)
++. .+|...+.+....++... .. ..++++++.+.+++..+|.+..+|+++..++.
T Consensus 197 dp~N~SAW~~R~~lL~~l~~~~~--------------~~---------~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 197 DGRNNSAWGWRWYLRVSRPGAET--------------SS---------RSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp CTTCHHHHHHHHHHHTTSTTCCC--------------CH---------HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccc--------------ch---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 766 889999988888775200 00 01356777788888888888888888888887
Q ss_pred HcCCH--------------------HHHHHHHHHHHHcC------CCcH-HHHHHHHHHHHcCCHHHHHHHHHHHH-hcC
Q 004336 691 DSHKE--------------------NEAIAELSRAIAFK------ADLH-LLHLRAAFHEHTGDVLGALRDCRAAL-SVD 742 (760)
Q Consensus 691 ~~g~~--------------------~eAi~~l~kal~~~------p~~~-~~~l~a~~~~~~g~~~~A~~~~~~aL-~l~ 742 (760)
+.|+. .+-.+.....+... +... .+.+.+.+|...|+.++|.+.|+... +.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~d 333 (349)
T 3q7a_A 254 HFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYD 333 (349)
T ss_dssp HTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Confidence 77654 11122211221111 1222 33466888888899999999999886 678
Q ss_pred CCcHHHHHHHHH
Q 004336 743 PNDQEMLELHSR 754 (760)
Q Consensus 743 P~~~~~l~~~~r 754 (760)
|-...-++...+
T Consensus 334 pir~~yw~~~~~ 345 (349)
T 3q7a_A 334 QMRAGYWEFRRR 345 (349)
T ss_dssp GGGHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 887777666544
|
| >4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-14 Score=121.55 Aligned_cols=81 Identities=25% Similarity=0.399 Sum_probs=66.8
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccC--CCCCCccceeEecCCCCCHHHHHHHHhccc-----c---CccC--CC
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSV-----T---GSLN--GV 250 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~--~~~e~~~~~v~~~~~~i~~~~~~~~~~~~y-----t---~~~~--~~ 250 (760)
|+|.. +|++|+|||.+ |++|+||++||++ ++.|+....|.|+ +|++.+|+.|++|+| | +.|+ .|
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~--~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECT--TSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECC--CCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 56664 78999999999 9999999999987 7899999999998 899999999999999 5 7773 28
Q ss_pred ChhhHHHHHHHHhhhCh
Q 004336 251 TPNLLLEILIFANKFCC 267 (760)
Q Consensus 251 ~~~~v~~ll~~a~~~~~ 267 (760)
+++++++||.|||+|+|
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 99999999999999986
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=8.5e-13 Score=138.17 Aligned_cols=172 Identities=13% Similarity=0.065 Sum_probs=131.4
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHH
Q 004336 506 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQA 585 (760)
Q Consensus 506 p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a 585 (760)
|.++..+..+|..++..|++++|+..|++++..+|++ ..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------------------------~~~ 40 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----------------------------------------AVY 40 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----------------------------------------HHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----------------------------------------HHH
Confidence 5678899999999999999999999999999999998 789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHH
Q 004336 586 LNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDREL 663 (760)
Q Consensus 586 ~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~ 663 (760)
+.++|.+|...|++++|+..|+++++.+|. .+++.+|.++...|++++|+..|+++++..|++...+.
T Consensus 41 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~---------- 110 (281)
T 2c2l_A 41 YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG---------- 110 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC----------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH----------
Confidence 999999999999999999999999998776 89999999999999999999999988888773311100
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 664 TRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 664 A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
...+ ... +..++...........|.+..+. ..+.++ .|++++|++.++++++.+
T Consensus 111 ---------------~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~ 165 (281)
T 2c2l_A 111 ---------------DDIP-----SAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGH 165 (281)
T ss_dssp ---------------SHHH-----HHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTT
T ss_pred ---------------HHHH-----HHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccc
Confidence 0111 111 11222222233334555555444 334333 489999999999999999
Q ss_pred CCcHHHHHHH
Q 004336 743 PNDQEMLELH 752 (760)
Q Consensus 743 P~~~~~l~~~ 752 (760)
|++......+
T Consensus 166 p~~~~~~~~l 175 (281)
T 2c2l_A 166 EDDGHIRAQQ 175 (281)
T ss_dssp SCHHHHTHHH
T ss_pred cchhhhhhHH
Confidence 9987654443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.1e-12 Score=133.71 Aligned_cols=253 Identities=11% Similarity=0.018 Sum_probs=190.9
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHcc-CHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 471 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g-~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~ 471 (760)
....+..++|+..++++|.++|++. .+++..+.+....| .+++++.++ .+++..+
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~y------taWn~R~~iL~~l~~~l~eEL~~~------------------~~~L~~n 119 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHY------TVWQYRFSLLTSLNKSLEDELRLM------------------NEFAVQN 119 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCCHHHHHHHH------------------HHHHHTT
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhH------HHHHHHHHHHHHhhhhHHHHHHHH------------------HHHHHhC
Confidence 3344566899999999999999995 99999999999999 599999999 9999999
Q ss_pred CCcHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHhhcCC
Q 004336 472 APKGVLYFRQSLLLLRL-N-CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE--------EGLRKAEESIQMKRS 541 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~-g-~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~e--------eAl~~~~~al~l~p~ 541 (760)
|++..+|+..+.++... + +++++++.+.++++.+|.+..+|...++++...|.++ ++++.++++++.+|.
T Consensus 120 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 120 LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 99999999999999998 8 9999999999999999999999999999999998888 999999999999999
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhcc
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ-------LDLAADCYSNALKIRH 614 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~-------~~eA~~~~~~Al~~~~ 614 (760)
+ ..+|+..+.++...++ ++++++++++++..+|
T Consensus 200 N----------------------------------------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P 239 (349)
T 3q7a_A 200 N----------------------------------------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP 239 (349)
T ss_dssp C----------------------------------------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred C----------------------------------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC
Confidence 9 4555555555555554 7899999999999877
Q ss_pred h--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHH-HHHHhcCCHHHHHHHHHHH--HhhCCCChHHHHHHHHHH
Q 004336 615 T--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY-EKRSEYCDRELTRADLEMV--TQLDPLRVYPYRYRAAVL 689 (760)
Q Consensus 615 ~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~-~~~~~~~~~~~A~~~l~ka--l~l~p~~~~~~~~La~~~ 689 (760)
. .+|+.+..++...|+... .-+...-|..+..- .... .-.+.+....... ...++..+.++..+|.+|
T Consensus 240 ~n~SaW~Ylr~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~ 312 (349)
T 3q7a_A 240 HNVSAWNYLRGFLKHFSLPLV-----PILPAILPYTASKLNPDIE--TVEAFGFPMPSDPLPEDTPLPVPLALEYLADSF 312 (349)
T ss_dssp TCHHHHHHHHHHHHHTTCCSG-----GGHHHHGGGTC----------------CCCCC-CCCSSCCSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcc-----cccccccccccccccccch--hHHHHHHHHHhcccccccCCCcHHHHHHHHHHH
Confidence 7 888888888887775300 00001111000000 0000 0000000000000 012357788999999999
Q ss_pred HHcCCHHHHHHHHHHHH-HcCCCcHHHH
Q 004336 690 MDSHKENEAIAELSRAI-AFKADLHLLH 716 (760)
Q Consensus 690 ~~~g~~~eAi~~l~kal-~~~p~~~~~~ 716 (760)
...|+.++|.+.++... +.+|-...++
T Consensus 313 ~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 313 IEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 99999999999999986 5566655555
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-12 Score=114.68 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 425 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 425 a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
++..+|.++...|++++|..++ .+++..+|.+...++.+|.++...|++++|+..+++++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYY------------------QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHH------------------HHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555566666666666666666 5566666666666666666666666666666666666666
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHH
Q 004336 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 584 (760)
Q Consensus 505 ~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~ 584 (760)
.|.+..++..+|.++...|++++|+..+++++...|.. ..
T Consensus 65 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------~~ 104 (136)
T 2fo7_A 65 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----------------------------------------AE 104 (136)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----------------------------------------HH
T ss_pred CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------------------------------------hH
Confidence 66666666666666666666666666666666655555 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
++..+|.++...|++++|...|++++..+|
T Consensus 105 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 105 AWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 555556666666666666666666555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=127.78 Aligned_cols=117 Identities=7% Similarity=-0.062 Sum_probs=110.4
Q ss_pred HHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHH
Q 004336 402 AEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 481 (760)
Q Consensus 402 A~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~l 481 (760)
+-..|++++.++|++. .+++.+|.++...|++++|+..+ .+++..+|.++.+|+.+
T Consensus 6 ~~~~~~~al~~~p~~~------~~~~~~g~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~l 61 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTL------EQLYSLAFNQYQSGXYEDAHXVF------------------QALCVLDHYDSRFFLGL 61 (148)
T ss_dssp CCCSHHHHTTCCHHHH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHH
T ss_pred hhhhHHHHHcCCHhhH------HHHHHHHHHHHHcCChHHHHHHH------------------HHHHHcCcccHHHHHHH
Confidence 3456888999999885 89999999999999999999999 99999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 482 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 482 a~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
|.++...|++++|+..|++++.++|+++.+++++|.++...|++++|+..|+++++++|++
T Consensus 62 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 9999999999999999999999999999999999999999999999999999999998876
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.46 E-value=5e-12 Score=132.78 Aligned_cols=180 Identities=12% Similarity=0.026 Sum_probs=145.9
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
.....+...+..++..|+|++|+..+++++...|...........++.+|.++...|++++|+.++
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-------------- 138 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILEL-------------- 138 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHH--------------
Confidence 344455667777888889999999999999998876544444456677899999999999999999
Q ss_pred HHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCcH----HHHHHHHHHHHHCCCHHH
Q 004336 461 LSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLAR---QHAASDH----ERLVYEGWILYDTSHCEE 527 (760)
Q Consensus 461 l~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~Ai~~l~kal---~~~p~~~----~a~~~Lg~i~~~~g~~ee 527 (760)
.+++...+.. ..+++.+|.+|...|++++|+.+|++++ +..|++. .+++++|.+|..+|++++
T Consensus 139 ----~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~ 214 (293)
T 2qfc_A 139 ----KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE 214 (293)
T ss_dssp ----HHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHH
Confidence 8888765433 6689999999999999999999999999 4556543 689999999999999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHH-HHHH
Q 004336 528 GLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLA-ADCY 606 (760)
Q Consensus 528 Al~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA-~~~~ 606 (760)
|+..+++++.+.++. ......+.+++++|.+|...|++++| ..+|
T Consensus 215 Al~~~~kal~~~~~~----------------------------------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~ 260 (293)
T 2qfc_A 215 SLYQVNKAIEISCRI----------------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHHHHHHHT----------------------------------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----------------------------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 999999999764321 00001167899999999999999999 8889
Q ss_pred HHHHhh
Q 004336 607 SNALKI 612 (760)
Q Consensus 607 ~~Al~~ 612 (760)
++|+.+
T Consensus 261 ~~Al~~ 266 (293)
T 2qfc_A 261 KKASFF 266 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-12 Score=120.53 Aligned_cols=136 Identities=14% Similarity=0.097 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+..++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~------------ 70 (166)
T 1a17_A 9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA------IYYGNRSLAYLRTECYGYALGDA------------ 70 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCCHHHHHHHH------------
Confidence 345678889999999999999999999999999999995 89999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHHHCCCHHHHHHHHHHHH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG--WILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg--~i~~~~g~~eeAl~~~~~al 536 (760)
.+++..+|.++.+++.+|.++...|++++|+..|+++++.+|.+..++..++ ..+...|++++|+..++++.
T Consensus 71 ------~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 71 ------TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp ------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999999999999999999999999999998885554 44888999999999999887
Q ss_pred hh
Q 004336 537 QM 538 (760)
Q Consensus 537 ~l 538 (760)
.+
T Consensus 145 ~~ 146 (166)
T 1a17_A 145 SV 146 (166)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=139.61 Aligned_cols=199 Identities=11% Similarity=-0.079 Sum_probs=161.1
Q ss_pred HHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHH-------HHHHHHcCCHHHHHHHHHH
Q 004336 428 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ-------SLLLLRLNCPEAAMRSLQL 500 (760)
Q Consensus 428 ~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~Ai~~l~k 500 (760)
..|.-+ ..+++..|...| .+++..+|+.+++|..+ +.++...++..+++..+++
T Consensus 12 ~~~~~~-~~~d~~~A~~~F------------------~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~ 72 (282)
T 4f3v_A 12 ESAVSM-LPMSEARSLDLF------------------TEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSG 72 (282)
T ss_dssp HHHHHH-TTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHH
T ss_pred HHHhcc-cCCCHHHHHHHH------------------HHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHH
Confidence 334433 578888999999 99999999999999999 8999999999999999999
Q ss_pred HHHhCCCcH---------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCC
Q 004336 501 ARQHAASDH---------------------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDS 559 (760)
Q Consensus 501 al~~~p~~~---------------------~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~ 559 (760)
.+.+.|... +....++.++...|++++|.+.|+..+...|+.
T Consensus 73 ~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~----------------- 135 (282)
T 4f3v_A 73 SVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH----------------- 135 (282)
T ss_dssp TTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH-----------------
T ss_pred HhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch-----------------
Confidence 999877643 344457888999999999999999888877776
Q ss_pred CcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHH
Q 004336 560 SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 560 ~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~ 635 (760)
. +.+.+|.++...++|++|+..|+++.+..++ .+++.+|.++...|++++|+
T Consensus 136 -----------------------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl 191 (282)
T 4f3v_A 136 -----------------------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAE 191 (282)
T ss_dssp -----------------------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHH
Confidence 5 7888899999999999999999988765322 58899999999999987777
Q ss_pred HHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Q 004336 636 EEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPL-RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL 714 (760)
Q Consensus 636 ~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~-~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~ 714 (760)
..|++++... .+|. .+.+++++|.++.++|+.++|...|++++..+|+ ..
T Consensus 192 ~~l~~a~~g~----------------------------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 192 RRLTEANDSP----------------------------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK 242 (282)
T ss_dssp HHHHHHHTST----------------------------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred HHHHHHhcCC----------------------------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence 7777654211 0133 3456778899999999999999999999999988 54
Q ss_pred H
Q 004336 715 L 715 (760)
Q Consensus 715 ~ 715 (760)
+
T Consensus 243 ~ 243 (282)
T 4f3v_A 243 V 243 (282)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.5e-13 Score=124.94 Aligned_cols=112 Identities=11% Similarity=-0.040 Sum_probs=105.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
+++++..+|++..+++.+|..+...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~- 88 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE- 88 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
+.+++++|.+|...|++++|+.+|+++++..|.
T Consensus 89 ---------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 89 ---------------------------------------PRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp ---------------------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 788899999999999999999999999987554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=147.59 Aligned_cols=150 Identities=14% Similarity=0.105 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+.+++.+|.+++..|+|++|+..|++++.++|++..+..
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~------------------------------------- 185 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN------------------------------------- 185 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-------------------------------------
Confidence 5677899999999999999999999999999999988852110
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.......|....+++++|.+|..+|++++|+..|+++++++|++..+++++|.++..+|++++|+..|++++++
T Consensus 186 ------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 186 ------EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 12222234457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 004336 539 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLA-ADCYSNALK 611 (760)
Q Consensus 539 ~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA-~~~~~~Al~ 611 (760)
+|++ ..++.++|.++...|++++| ...|++++.
T Consensus 260 ~P~~----------------------------------------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 260 YPNN----------------------------------------KAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CSSC----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 66777777778778888777 446666554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-12 Score=127.34 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=125.2
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
..+..++.+|..++..|++++|+..|++++ +| + ..++..+|.++...|++++|+.++
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~------~~~~~~lg~~~~~~g~~~~A~~~~-------------- 60 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-H------SRICFNIGCMYTILKNMTEAEKAF-------------- 60 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-C------HHHHHHHHHHHHHTTCHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-C------hHHHHHHHHHHHHcCCHHHHHHHH--------------
Confidence 355667888999999999999999999995 44 3 379999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHCCC
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH----------------ERLVYEGWILYDTSH 524 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~----------------~a~~~Lg~i~~~~g~ 524 (760)
.+++..+|.++.+++++|.++...|++++|+..|+++++..|.+. .+++++|.++...|+
T Consensus 61 ----~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (213)
T 1hh8_A 61 ----TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136 (213)
T ss_dssp ----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999888766 999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCh
Q 004336 525 CEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 525 ~eeAl~~~~~al~l~p~~ 542 (760)
+++|+..|+++++++|+.
T Consensus 137 ~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 137 WKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHcCccc
Confidence 999999999999999987
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.42 E-value=8.2e-13 Score=122.92 Aligned_cols=113 Identities=11% Similarity=-0.024 Sum_probs=103.4
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.+.+++..+|++...++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 35778888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 543 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 543 ~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
+.+++++|.+|...|++++|+.+|+++++..|.
T Consensus 86 ----------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 86 ----------------------------------------PRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp ----------------------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred ----------------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 788899999999999999999999999987654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.41 E-value=9.1e-13 Score=122.62 Aligned_cols=115 Identities=9% Similarity=-0.038 Sum_probs=104.3
Q ss_pred HHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHH
Q 004336 404 HLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL 483 (760)
Q Consensus 404 ~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~ 483 (760)
..|++++..+|++. .+++.+|..+...|++++|+.++ .+++..+|.++.+|+.+|.
T Consensus 5 ~~l~~al~~~p~~~------~~~~~~a~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~lg~ 60 (142)
T 2xcb_A 5 GTLAMLRGLSEDTL------EQLYALGFNQYQAGKWDDAQKIF------------------QALCMLDHYDARYFLGLGA 60 (142)
T ss_dssp ----CCTTCCHHHH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHcCCHHHH------HHHHHHHHHHHHHccHHHHHHHH------------------HHHHHhCCccHHHHHHHHH
Confidence 46778888888884 88899999999999999999999 9999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 484 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
++...|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|++
T Consensus 61 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 61 CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999998876
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-12 Score=114.33 Aligned_cols=115 Identities=10% Similarity=0.002 Sum_probs=104.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
|..+..++.+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--------- 71 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--------- 71 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc------ch--HHHHHHHH
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR------HT--RAHQGLAR 623 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~------~~--~a~~~La~ 623 (760)
..++..+|.++...|++++|+..|+++++.+ |. .++..++.
T Consensus 72 -------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 72 -------------------------------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 7889999999999999999999999999987 54 56666665
Q ss_pred HHH
Q 004336 624 VHF 626 (760)
Q Consensus 624 ~~~ 626 (760)
+..
T Consensus 121 ~~~ 123 (126)
T 3upv_A 121 ASQ 123 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=118.39 Aligned_cols=109 Identities=13% Similarity=0.128 Sum_probs=97.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYA 551 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~ 551 (760)
+.+.++.++|..+.+.|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++ ..+..+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--- 82 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI--- 82 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH---
Confidence 3466788999999999999999999999999999999999999999999999999999999999998876 222221
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
+.++.++|.++...|++++|+.+|+++++..|+
T Consensus 83 -------------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 -------------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 567888999999999999999999999987665
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=124.92 Aligned_cols=126 Identities=6% Similarity=0.001 Sum_probs=116.9
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
+...|++++|+..|++++..+|++. .++..+|.++...|++++|+.++ .+++..+|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~~A~~~~------------------~~al~~~p 75 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNS------EQWALLGEYYLWQNDYSNSLLAY------------------RQALQLRG 75 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHcCC
Confidence 3456699999999999999999995 89999999999999999999999 99999999
Q ss_pred CcHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 473 PKGVLYFRQSLL-LLRLNCP--EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 473 ~~~~~~~~la~~-~~~~g~~--~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.++.+++.+|.+ +...|++ ++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999 8899999 999999999999999999999999999999999999999999999999988
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.1e-12 Score=113.10 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=64.7
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..+...|..++..|+|++|+..|++++..+|+++ .++..+|.++...|++++|+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~---------------- 61 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA------RGYSNRAAALAKLMSFPEAIADC---------------- 61 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhcCHHHHHHHH----------------
Confidence 44455555555555566666666666666666653 55555555555555555555555
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHH
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA------ASDHERLVYEGWIL 519 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~------p~~~~a~~~Lg~i~ 519 (760)
.+++..+|+++.+++.+|.++...|++++|+..|+++++++ |.+..++..++.+.
T Consensus 62 --~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 62 --NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp --HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred --HHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555 55555555554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-11 Score=115.08 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 422 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 501 (760)
Q Consensus 422 ~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~ka 501 (760)
....+..+|..+...|++++|+.++ .+++..+|.+..+++.+|.++...|++++|+..++++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~------------------~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 73 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFY------------------SQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHH------------------HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3577889999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc
Q 004336 502 RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 581 (760)
Q Consensus 502 l~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~ 581 (760)
++.+|.+..+++.+|.++...|++++|+..|++++..+|++
T Consensus 74 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--------------------------------------- 114 (166)
T 1a17_A 74 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD--------------------------------------- 114 (166)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------------------------------
T ss_pred HHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------------------------------
Confidence 99999999999999999999999999999999999999988
Q ss_pred HHHHH--HHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 582 KGQAL--NNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 582 ~~~a~--~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
..++ ..++..+...|++++|+..+.++..
T Consensus 115 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 115 -KDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 2333 3344446667788888888877654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=129.75 Aligned_cols=173 Identities=12% Similarity=0.006 Sum_probs=137.1
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
.....++..|+|++|+..+++++...+..+........+..+|.++...+++++|+.++ +++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~------------------~~a 141 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILEL------------------KKL 141 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH------------------HHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHH------------------HHH
Confidence 34455666779999999999999988877643322234456899998899999999999 888
Q ss_pred HHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 468 LESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQH-------AASDHERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 468 l~~~p~~------~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
+...+.. ..++.++|.+|...|++++|+.+|+++++. .+....+++++|.+|..+|++++|+..+++
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 142 LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8864332 347899999999999999999999999953 123346889999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Q 004336 535 SIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG-QLDLAADCYSNALKI 612 (760)
Q Consensus 535 al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g-~~~eA~~~~~~Al~~ 612 (760)
++++.+... .....+.+++++|.+|...| .+++|+.+|++|+.+
T Consensus 222 al~~~~~~~----------------------------------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 222 AIEISCRIN----------------------------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTT----------------------------------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC----------------------------------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 998754330 00011688999999999999 579999999999874
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-09 Score=127.98 Aligned_cols=351 Identities=8% Similarity=-0.049 Sum_probs=240.3
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC---HHHHHHHHhhhccccccCC
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN---WTIADCWLQLYDRWSSVDD 457 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~---~~~A~~~l~l~~~~~~~~d 457 (760)
.....|..+.......+.++.+...|++++...|... ..|..........++ ++.+..++
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~------~lW~~Yi~~E~~~~~~~~~~~v~~lf----------- 126 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMA------NIWCMRLSLEFDKMEELDAAVIEPVL----------- 126 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHTC--CCCHHHHHHHH-----------
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHhhCCcchHHHHHHHH-----------
Confidence 3445566666666667899999999999999999996 666666666777788 99999988
Q ss_pred cCcHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCH----HH----HHHHHHHHHHh----CCCcHHHHHHHHHHHH---
Q 004336 458 IGSLSVIYQMLESDA--PKGVLYFRQSLLLLRLNCP----EA----AMRSLQLARQH----AASDHERLVYEGWILY--- 520 (760)
Q Consensus 458 ~~sl~~~~~al~~~p--~~~~~~~~la~~~~~~g~~----~~----Ai~~l~kal~~----~p~~~~a~~~Lg~i~~--- 520 (760)
++++...| .+..+|........+.++. ++ ..+.|++|+.. ++.....|........
T Consensus 127 -------eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 127 -------ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp -------HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred -------HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 89998884 6778888877766665554 33 34788888764 5666677766554433
Q ss_pred ------HCCCHHHHHHHHHHHHhhcCCh---HHHH---HH----------------------HHH-HHc-----ccCC--
Q 004336 521 ------DTSHCEEGLRKAEESIQMKRSF---EAFF---LK----------------------AYA-LAD-----SSQD-- 558 (760)
Q Consensus 521 ------~~g~~eeAl~~~~~al~l~p~~---~a~~---~l----------------------a~~-l~~-----~~~~-- 558 (760)
.+++.+.+...|++++.+ |.. ..|. .. +.. +.. ..++
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 344577888999999874 432 1111 00 000 000 0000
Q ss_pred -CCc---------------chhhhhH--------------------HHHHHhhhHhhccH----HHHHHHHHHHHHHcCC
Q 004336 559 -SSC---------------SSTVVSL--------------------LEDALKCPSDRLRK----GQALNNLGSVYVDCGQ 598 (760)
Q Consensus 559 -~~~---------------~~~~~~~--------------------leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~ 598 (760)
+.. ....+.. .+.....|++++.. ...|...+..+...|+
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence 000 0011111 12223345555333 7889999999999999
Q ss_pred HHHHH-HHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------cC-----------cHHHHH
Q 004336 599 LDLAA-DCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKA-----------RN-----------NASAYE 653 (760)
Q Consensus 599 ~~eA~-~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~-----------~~-----------~~~~~~ 653 (760)
.++|. ..|++|+...|. ..+..++......|+++.|...|++++... |. ...++.
T Consensus 359 ~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 99997 999999987665 667888999999999999999999998752 31 222333
Q ss_pred HHH----hcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcC
Q 004336 654 KRS----EYCDRELTRADLEMVTQL-DPLRVYPYRYRAAVLMDSHK-ENEAIAELSRAIAFKADLHLLHLR-AAFHEHTG 726 (760)
Q Consensus 654 ~~~----~~~~~~~A~~~l~kal~l-~p~~~~~~~~La~~~~~~g~-~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g 726 (760)
... ..+..+.|...|.+|++. .+.....|...|.+....++ .+.|...|+++++..|+++.+++. +.+....|
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 322 346788999999999887 54556777777777666654 899999999999999998888744 66777779
Q ss_pred CHHHHHHHHHHHHhcCCC---cHHHHHHHHHhh
Q 004336 727 DVLGALRDCRAALSVDPN---DQEMLELHSRVY 756 (760)
Q Consensus 727 ~~~~A~~~~~~aL~l~P~---~~~~l~~~~r~~ 756 (760)
+.+.|...|++++...|+ ...++..+.+..
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999999998873 445555555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-11 Score=111.71 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=113.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 471 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 471 ~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
.|.+..+++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------- 83 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-------- 83 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--------
Confidence 477889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHc
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLK 628 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~ 628 (760)
..++..+|.++...|++++|+.+|+++++.+|. .++..++.++...
T Consensus 84 --------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 84 --------------------------------IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred --------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 788999999999999999999999999998776 8899999999887
Q ss_pred CC
Q 004336 629 NN 630 (760)
Q Consensus 629 g~ 630 (760)
|+
T Consensus 132 ~~ 133 (133)
T 2lni_A 132 YN 133 (133)
T ss_dssp TC
T ss_pred cC
Confidence 74
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-11 Score=109.91 Aligned_cols=123 Identities=14% Similarity=0.058 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+..++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~------------ 69 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA------VYFCNRAAAYSKLGNYAGAVQDC------------ 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhhchHHHHHHH------------
Confidence 445677788888899999999999999999999999885 88899999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 525 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~ 525 (760)
.+++..+|.++.+++.+|.++...|++++|+..|+++++..|++..++..+|.++...|++
T Consensus 70 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 70 ------ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999888875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.36 E-value=6e-11 Score=124.46 Aligned_cols=169 Identities=7% Similarity=-0.071 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG------VLYFRQSLLLLRLNCPEAAMRS 497 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~Ai~~ 497 (760)
..+...+..+...|++++|...+ .+++...+... ..++.+|.++...|++++|+..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 137 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKV------------------WNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILE 137 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH------------------HHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 45556777888999999999999 88888776543 3466788999999999999999
Q ss_pred HHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---cCChHHHHHHHHHHHcccCCCCcchhhhhH
Q 004336 498 LQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQM---KRSFEAFFLKAYALADSSQDSSCSSTVVSL 568 (760)
Q Consensus 498 l~kal~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l---~p~~~a~~~la~~l~~~~~~~~~~~~~~~~ 568 (760)
|+++++..+.. ..++.++|.+|...|++++|+..|++++++ .|+.. .
T Consensus 138 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~------------------------~ 193 (293)
T 2qfc_A 138 LKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE------------------------E 193 (293)
T ss_dssp HHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH------------------------H
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc------------------------c
Confidence 99999875543 568999999999999999999999999943 34330 0
Q ss_pred HHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--------hHHHHHHHHHHHHcCCHHHH-HHHHH
Q 004336 569 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--------TRAHQGLARVHFLKNNKTTA-YEEMT 639 (760)
Q Consensus 569 leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~--------~~a~~~La~~~~~~g~~~~A-~~~l~ 639 (760)
. ...+++++|.+|...|+|++|+.+|++++++.+ ..+++++|.+|...|++++| ...++
T Consensus 194 ~------------~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 194 F------------DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp H------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred c------------hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 0 036889999999999999999999999998533 27899999999999999999 77899
Q ss_pred HHHHhcc
Q 004336 640 KLIKKAR 646 (760)
Q Consensus 640 ~al~~~~ 646 (760)
+++....
T Consensus 262 ~Al~~~~ 268 (293)
T 2qfc_A 262 KASFFFD 268 (293)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-11 Score=120.09 Aligned_cols=145 Identities=12% Similarity=0.124 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..++.+|..+...|++++|+..+ .+++ +| ++.+++.+|.++...|++++|+..|+++++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~------------------~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 65 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAF------------------SAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSIN 65 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH------------------HHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56778999999999999999999 6664 33 788999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChH--HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE--AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 581 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~--a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~ 581 (760)
.+|.+..++..+|.++...|++++|+..|+++++..|.+. .+..++. .....
T Consensus 66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------------------~~~~~ 119 (213)
T 1hh8_A 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL--------------------------QFKLF 119 (213)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB--------------------------CCEEE
T ss_pred hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc--------------------------ccCcc
Confidence 9999999999999999999999999999999999988760 0000000 00011
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 582 KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 582 ~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
...+++++|.++...|++++|+..|+++++..|.
T Consensus 120 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 120 ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred chHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 2688999999999999999999999999998775
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-11 Score=120.04 Aligned_cols=168 Identities=17% Similarity=0.098 Sum_probs=127.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchh
Q 004336 485 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 564 (760)
Q Consensus 485 ~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~ 564 (760)
++..|++++|.+.++......+....++..+|.++...|++++|+..+++++.+....
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------- 59 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS---------------------- 59 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----------------------
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc----------------------
Confidence 3568999999996665555444678899999999999999999999999998753222
Q ss_pred hhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------cch---HHHHHHHHHHHHcCCHHHHH
Q 004336 565 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI------RHT---RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 565 ~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~------~~~---~a~~~La~~~~~~g~~~~A~ 635 (760)
+.. .....++.++|.++...|++++|+.+|+++++. ++. .++.++|.++...|++++|.
T Consensus 60 --~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 127 (203)
T 3gw4_A 60 --GDH----------TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR 127 (203)
T ss_dssp --CCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred --CCc----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 000 001678899999999999999999999999986 331 67899999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 004336 636 EEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 636 ~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p 710 (760)
..++++++..+..+.... ...++..+|.++...|++++|+..+++++.+..
T Consensus 128 ~~~~~al~~~~~~~~~~~------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 128 QEYEKSLVYAQQADDQVA------------------------IACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHTTCHHH------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHH------------------------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999988876442111110 123467889999999999999999999987643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=147.31 Aligned_cols=191 Identities=9% Similarity=0.002 Sum_probs=143.2
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC--CHHHHHHHH
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNC----------PEAAMRSLQLARQHAASDHERLVYEGWILYDTS--HCEEGLRKA 532 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~----------~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g--~~eeAl~~~ 532 (760)
.+++..+|++..+|+..+.++...|+ +++|++.++++++.+|++..+|+..++++...| ++++|+..+
T Consensus 53 ~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~ 132 (567)
T 1dce_A 53 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 132 (567)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHH
Confidence 44444444444555555555555554 788889999999999999999999999999888 669999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Q 004336 533 EESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG-QLDLAADCYSNALK 611 (760)
Q Consensus 533 ~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g-~~~eA~~~~~~Al~ 611 (760)
+++++.+|.+ ..+|+..|.+....| .++++++++.++++
T Consensus 133 ~k~l~~d~~N----------------------------------------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 133 ARFLEADERN----------------------------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp HHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred HHHHhhcccc----------------------------------------ccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 9999999888 677777788887888 88889999999888
Q ss_pred hcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 004336 612 IRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVL 689 (760)
Q Consensus 612 ~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~ 689 (760)
.+|. .+|..++.++...++..++. ..+ ....+.++++++.+.+|+.++|++..+|++++.++
T Consensus 173 ~~p~n~saW~~r~~ll~~l~~~~~~~-----------~~~-----~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 173 RNFSNYSSWHYRSCLLPQLHPQPDSG-----------PQG-----RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCCSS-----------SCC-----SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HCCCCccHHHHHHHHHHhhccccccc-----------ccc-----cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 7766 88888888887764331100 000 00012357889999999999999999999999999
Q ss_pred HHcCCHHH------------HHHHHHHHHHcCCC
Q 004336 690 MDSHKENE------------AIAELSRAIAFKAD 711 (760)
Q Consensus 690 ~~~g~~~e------------Ai~~l~kal~~~p~ 711 (760)
...+++++ |+..|.+++..+|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 237 GRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp SCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred hcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 99998766 56667777776665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-10 Score=120.64 Aligned_cols=245 Identities=6% Similarity=-0.062 Sum_probs=172.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHH---------HHHHHHhhhccccccCCcCcHHHHHH
Q 004336 396 RKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT---------IADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 396 ~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~---------~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
.|.|..++. .+-+..|.++ ......+...+..+|++. .|...+..+.. .+++..+++
T Consensus 26 ~G~yq~~i~---e~~~~~~~~~-----~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~------~~a~~~l~~ 91 (310)
T 3mv2_B 26 TGNFVQCLQ---EIEKFSKVTD-----NTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLD------TKNIEELEN 91 (310)
T ss_dssp TTCHHHHTH---HHHTSSCCCC-----HHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHT------TTCCHHHHH
T ss_pred hhHHHHHHH---HHHhcCccch-----HHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhc------ccHHHHHHH
Confidence 349999987 3445667665 345566667777777764 24343322221 124566677
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC---
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA--SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--- 541 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p--~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~--- 541 (760)
.+...+.....++.+|.++...|++++|++.+.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+
T Consensus 92 l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~ 171 (310)
T 3mv2_B 92 LLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS 171 (310)
T ss_dssp TTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccc
Confidence 7766666677778899999999999999999999988886 78888999999999999999999999998888883
Q ss_pred --hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcch--
Q 004336 542 --FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG--QLDLAADCYSNALKIRHT-- 615 (760)
Q Consensus 542 --~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g--~~~eA~~~~~~Al~~~~~-- 615 (760)
+. ......-|.+.+..| ++.+|...|+++....|.
T Consensus 172 ~~d~---------------------------------------~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~ 212 (310)
T 3mv2_B 172 GDNE---------------------------------------MILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK 212 (310)
T ss_dssp HHHH---------------------------------------HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred cchH---------------------------------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence 21 112222233344445 999999999998886663
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~ 695 (760)
.....+. ++..+|++++|...++.+++.+|.... ---.+|+++.++.+++.+....|+
T Consensus 213 ~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~--------------------k~~~~p~~~~~LaN~i~l~~~lgk- 270 (310)
T 3mv2_B 213 TQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQ--------------------KENAVLYKPTFLANQITLALMQGL- 270 (310)
T ss_dssp HHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTT--------------------CHHHHSSHHHHHHHHHHHHHHTTC-
T ss_pred cHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccc--------------------cccCCCCCHHHHHHHHHHHHHhCh-
Confidence 2222222 899999998888888866665441000 000146777788788888888887
Q ss_pred HHHHHHHHHHHHcCCCcHHHH
Q 004336 696 NEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 696 ~eAi~~l~kal~~~p~~~~~~ 716 (760)
+|.++++++.+..|+++.+.
T Consensus 271 -~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 271 -DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp -TTHHHHHHHHHTTCCCHHHH
T ss_pred -HHHHHHHHHHHhCCCChHHH
Confidence 88899999999999988664
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-11 Score=115.86 Aligned_cols=114 Identities=10% Similarity=-0.013 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
...+..+|.++...|++++|+.++ .+++..+|+++.+++++|.+|...|++++|+..|++++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 72 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLY------------------TQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELAT 72 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 578999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHc
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALAD 554 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~ 554 (760)
+++|++..+++.+|.++..+|++++|+..|+++++++|++ .+++..+.....
T Consensus 73 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 766666554433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-11 Score=116.76 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=107.5
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
..+..++.+|.+++..|+|++|+..|++++.++|++. .++..+|.++...|++++|+.++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~-------------- 68 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP------IYLSNRAAAYSASGQHEKAAEDA-------------- 68 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHTTCHHHHHHHH--------------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH------HHHHHHHHHHHHccCHHHHHHHH--------------
Confidence 4567788999999999999999999999999999995 89999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 519 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~ 519 (760)
++++..+|++..+++++|.+|...|++++|+..|+++++++|++..+++..+...
T Consensus 69 ----~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 69 ----ELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp ----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred ----HHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988777766543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-11 Score=110.10 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=113.9
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
.+|.++..++.+|..+...|++++|+..|++++...|++..++..+|.++...|++++|+..+++++...|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------- 79 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY------- 79 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-------
Confidence 3466788999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 627 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~ 627 (760)
..++..+|.++...|++++|+.+|+++++..|. .++..++.++..
T Consensus 80 ---------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 80 ---------------------------------SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 788899999999999999999999999998775 889999999999
Q ss_pred cCCH
Q 004336 628 KNNK 631 (760)
Q Consensus 628 ~g~~ 631 (760)
.|++
T Consensus 127 ~~~~ 130 (131)
T 2vyi_A 127 LREA 130 (131)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 8875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-11 Score=111.05 Aligned_cols=105 Identities=11% Similarity=0.074 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
..+.|.++..+|..++.+|+|++|+..|++++.++|++. .++..+|.++...|++++|+..+
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~------~~~~nlg~~~~~~~~~~~A~~~~------------ 65 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI------TFYNNKAAVYFEEKKFAECVQFC------------ 65 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHhHHHHHHHhhhHHHHHHHH------------
Confidence 356788899999999999999999999999999999995 89999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004336 459 GSLSVIYQMLESDAPK-------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 507 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~ 507 (760)
.+++..+|++ +.+++++|.++...|++++|++.|++++...|+
T Consensus 66 ------~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 66 ------EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ------HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 9999888765 356777888888888888888888888877764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-11 Score=110.62 Aligned_cols=117 Identities=13% Similarity=0.012 Sum_probs=75.8
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
..+++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~---------------- 73 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA------KLYSNRAACYTKLLEFQLALKDC---------------- 73 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH------HHHHHHHHHHTTTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHhccHHHHHHHH----------------
Confidence 34455556666666666666666666666666663 56666666666666666666666
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 523 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g 523 (760)
++++..+|.+..+++.+|.++...|++++|+..|+++++.+|.+..++..++.++..+|
T Consensus 74 --~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 74 --EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp --HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred --HHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-09 Score=124.96 Aligned_cols=218 Identities=10% Similarity=-0.026 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHH-hhhHhhccH----HHHHHHHHHHHHHcCCHH
Q 004336 527 EGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDAL-KCPSDRLRK----GQALNNLGSVYVDCGQLD 600 (760)
Q Consensus 527 eAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl-~~~~~~l~~----~~a~~~Lg~~y~~~g~~~ 600 (760)
.....|++++...|.+ +.|+..+..+... +..++|. +.+++++.. ...|..++......|+++
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~-----------~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEK-----------NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----------SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Confidence 3567899999999998 8999998887776 3334443 555555322 667888999999999999
Q ss_pred HHHHHHHHHHhhc-----------c-------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccCcHHHHHHH
Q 004336 601 LAADCYSNALKIR-----------H-------------TRAHQGLARVHFLKNNKTTAYEEMTKLIKK-ARNNASAYEKR 655 (760)
Q Consensus 601 eA~~~~~~Al~~~-----------~-------------~~a~~~La~~~~~~g~~~~A~~~l~~al~~-~~~~~~~~~~~ 655 (760)
+|...|++++..- | ..+|...+.+..+.|+.+.|...|.++++. .+....+|...
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 9999999999731 2 147888888888999999999999999988 33333344332
Q ss_pred H----h-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHH-HHHHHHcC
Q 004336 656 S----E-YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD---LHLLHLR-AAFHEHTG 726 (760)
Q Consensus 656 ~----~-~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~---~~~~~l~-a~~~~~~g 726 (760)
+ . .++.+.|...|+.+++..|+++..|...+......|+.+.|...|++++...|+ ...++.. ..+-...|
T Consensus 476 A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 476 AYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 1 1 245899999999999999999999988999999999999999999999998884 3345533 66667779
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 004336 727 DVLGALRDCRAALSVDPNDQEMLELHSRV 755 (760)
Q Consensus 727 ~~~~A~~~~~~aL~l~P~~~~~l~~~~r~ 755 (760)
+.+.+...++++.+..|+++.+-.+..|.
T Consensus 556 ~~~~~~~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 556 SLNSVRTLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp CSHHHHHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCcHHHHHHHHh
Confidence 99999999999999999988776666554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.6e-11 Score=115.30 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=127.4
Q ss_pred HHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCC
Q 004336 434 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ------HAAS 507 (760)
Q Consensus 434 ~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~------~~p~ 507 (760)
...|++++|...+ +......+..+.++..+|.++...|++++|+..+++++. ..|.
T Consensus 3 ~~~g~~~~A~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 64 (203)
T 3gw4_A 3 FEAHDYALAERQA------------------QALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64 (203)
T ss_dssp ----CHHHHHHHH------------------HHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred cccccHHHHHHHH------------------HHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHH
Confidence 4578888888855 333332236788999999999999999999999999998 3455
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHH
Q 004336 508 DHERLVYEGWILYDTSHCEEGLRKAEESIQM---KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 584 (760)
Q Consensus 508 ~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l---~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~ 584 (760)
...++.++|.++...|++++|+..+++++.+ .++.. .....
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------------~~~~~ 108 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP------------------------------------LAASA 108 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH------------------------------------HHHHH
Confidence 6778999999999999999999999999976 22110 00157
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc----h----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRH----T----RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~----~----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
++.++|.++...|++++|+.+++++++..+ . .++..+|.++...|++++|...++++++...
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999997421 1 5678999999999999999999999988765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-11 Score=117.59 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=90.5
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHCCCH--HHHHHHHHHHHhhcCC
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHC--EEGLRKAEESIQMKRS 541 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i-~~~~g~~--eeAl~~~~~al~l~p~ 541 (760)
.+++..+|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+ +...|++ ++|+..++++++.+|+
T Consensus 34 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~ 113 (177)
T 2e2e_A 34 QDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN 113 (177)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC
Confidence 788888888888888888888888888888888888888888888888888888 6778887 8888888888888887
Q ss_pred hHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 542 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 542 ~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
+ ..++..+|.+|...|++++|+..|+++++..|.
T Consensus 114 ~----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 114 E----------------------------------------ITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp C----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred c----------------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 7 667777888888888888888888888877665
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7.3e-11 Score=123.83 Aligned_cols=166 Identities=7% Similarity=-0.081 Sum_probs=135.3
Q ss_pred HHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 427 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV------LYFRQSLLLLRLNCPEAAMRSLQL 500 (760)
Q Consensus 427 ~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~Ai~~l~k 500 (760)
...+..+...|++++|...+ ++++...+..+. .+..+|.++...|++++|+..|++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~------------------~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~ 140 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKV------------------WNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKK 140 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHH------------------HHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH------------------HHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 33466778899999999999 888887766554 233588899999999999999999
Q ss_pred HHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHcccCCCCcchhhhhHHHH
Q 004336 501 ARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKR---SFEAFFLKAYALADSSQDSSCSSTVVSLLED 571 (760)
Q Consensus 501 al~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p---~~~a~~~la~~l~~~~~~~~~~~~~~~~lee 571 (760)
++...+.. ..++.++|.+|...|++++|+..|+++++... .+
T Consensus 141 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------- 191 (293)
T 3u3w_A 141 LLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN----------------------------- 191 (293)
T ss_dssp HHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC-----------------------------
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-----------------------------
Confidence 99965432 34789999999999999999999999995321 11
Q ss_pred HHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--------hHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 004336 572 ALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--------TRAHQGLARVHFLKN-NKTTAYEEMTKLI 642 (760)
Q Consensus 572 Al~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~--------~~a~~~La~~~~~~g-~~~~A~~~l~~al 642 (760)
......+++++|.+|...|+|++|+.++++++++.+ ..+++++|.+|...| ++++|+..+++++
T Consensus 192 -------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 192 -------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred -------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 000167899999999999999999999999998532 278999999999999 4799999999998
Q ss_pred Hhcc
Q 004336 643 KKAR 646 (760)
Q Consensus 643 ~~~~ 646 (760)
....
T Consensus 265 ~i~~ 268 (293)
T 3u3w_A 265 FFFD 268 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-11 Score=118.20 Aligned_cols=140 Identities=9% Similarity=0.018 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhch----------HHHHHHHHHHHHHccCHHHHHHHHhh
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGR----------VAASQLHMLVREHIDNWTIADCWLQL 448 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~----------~~a~~~lg~l~~~~g~~~~A~~~l~l 448 (760)
....+..+..+|..++..|+|++|+..|++++...|+++..... ..++..+|.++...|++++|+.++
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~-- 111 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA-- 111 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH--
Confidence 34567778888999999999999999999999999887532221 267888999999999999999999
Q ss_pred hccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Q 004336 449 YDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG 528 (760)
Q Consensus 449 ~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeA 528 (760)
.+++..+|.+..+++.+|.++...|++++|+..|+++++++|++..++..++.++...++.+++
T Consensus 112 ----------------~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 112 ----------------SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp ----------------HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred ----------------HHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888877
Q ss_pred H-HHHHHHH
Q 004336 529 L-RKAEESI 536 (760)
Q Consensus 529 l-~~~~~al 536 (760)
. ..|.+.+
T Consensus 176 ~~~~~~~~f 184 (198)
T 2fbn_A 176 DKLTFGGMF 184 (198)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 6 4444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.8e-12 Score=125.33 Aligned_cols=131 Identities=9% Similarity=0.019 Sum_probs=109.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 471 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH----------------ERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 471 ~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~----------------~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
.+..+..+..+|..+...|++++|+..|++++...|.++ .++.++|.++...|++++|+..+++
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 345567888999999999999999999999999988876 8899999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 535 SIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 535 al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
++.++|++ ..+++.+|.+|...|++++|+..|+++++.+|
T Consensus 114 al~~~p~~----------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 114 VLKIDKNN----------------------------------------VKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHSTTC----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHhCccc----------------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 99999988 78888999999999999999999999998776
Q ss_pred h--HHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 004336 615 T--RAHQGLARVHFLKNNKTTAY-EEMTKL 641 (760)
Q Consensus 615 ~--~a~~~La~~~~~~g~~~~A~-~~l~~a 641 (760)
. .++..++.++...++..++. ..+.++
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC---------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 78888999988888777666 344433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-10 Score=134.02 Aligned_cols=185 Identities=13% Similarity=0.057 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC----------HHHHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN----------WTIADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~----------~~~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
..++|+..+++++..+|++. .+|+..+.+....|+ +++++.++ .++
T Consensus 44 ~~eeal~~~~~~l~~nP~~~------taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~------------------~~~ 99 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFA------TLWNCRREVLQHLETEKSPEESAALVKAELGFL------------------ESC 99 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH------------------HHH
T ss_pred CCHHHHHHHHHHHHHCchhH------HHHHHHHHHHHhcccccchhhhhhhHHHHHHHH------------------HHH
Confidence 44788999999999999995 999999999999988 89999998 999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhcCCh-H
Q 004336 468 LESDAPKGVLYFRQSLLLLRLN--CPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-HCEEGLRKAEESIQMKRSF-E 543 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g--~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g-~~eeAl~~~~~al~l~p~~-~ 543 (760)
+..+|++..+|+..+.++.+.| ++++|++.+.++++.+|.+..+|.+.++++...| .+++++++++++++.+|++ .
T Consensus 100 l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s 179 (567)
T 1dce_A 100 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179 (567)
T ss_dssp HHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc
Confidence 9999999999999999999999 7799999999999999999999999999999999 9999999999999999999 5
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHH
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGL 621 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~L 621 (760)
+|...+.++............ | -...+.+++|++++.+|+..+|. .+|+.+
T Consensus 180 aW~~r~~ll~~l~~~~~~~~~-------------------------~--~~~~~~~~eel~~~~~ai~~~P~~~saW~y~ 232 (567)
T 1dce_A 180 SWHYRSCLLPQLHPQPDSGPQ-------------------------G--RLPENVLLKELELVQNAFFTDPNDQSAWFYH 232 (567)
T ss_dssp HHHHHHHHHHHHSCCCCSSSC-------------------------C--SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred HHHHHHHHHHhhccccccccc-------------------------c--cccHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 555555554442100000000 0 00125689999999999998877 899999
Q ss_pred HHHHHHcCCHHH
Q 004336 622 ARVHFLKNNKTT 633 (760)
Q Consensus 622 a~~~~~~g~~~~ 633 (760)
+.++...+++.+
T Consensus 233 ~~ll~~~~~~~~ 244 (567)
T 1dce_A 233 RWLLGRAEPHDV 244 (567)
T ss_dssp HHHHSCCCCCSC
T ss_pred HHHHhcCCCccc
Confidence 999998888554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.7e-11 Score=108.15 Aligned_cols=106 Identities=12% Similarity=0.020 Sum_probs=98.7
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
.+|.++..++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|++
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------- 76 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------- 76 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-------
Confidence 4578899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
..+++.+|.++...|++++|+..|+++++..|.
T Consensus 77 ---------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 ---------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 788999999999999999999999999986554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=103.35 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=107.4
Q ss_pred CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 471 DAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 471 ~p~~-~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
+|.. ...++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------- 76 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------- 76 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------
Confidence 4544 78899999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 627 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~ 627 (760)
..++..+|.++...|++++|+..|+++++.+|. .++..++.++..
T Consensus 77 ---------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 77 ---------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 678889999999999999999999999997766 788888888876
Q ss_pred cC
Q 004336 628 KN 629 (760)
Q Consensus 628 ~g 629 (760)
.|
T Consensus 124 ~g 125 (125)
T 1na0_A 124 QG 125 (125)
T ss_dssp HC
T ss_pred cc
Confidence 54
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-11 Score=109.35 Aligned_cols=101 Identities=10% Similarity=-0.017 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..++.+|..+...|++++|+..+ ++++..+|+++.+|+.+|.++...|++++|+..|+++++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~------------------~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAF------------------EAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45778999999999999999999 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
++|++..++..+|.++...|++++|+..++++++++|++
T Consensus 80 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 999999999999999999999999999999999999976
|
| >1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D | Back alignment and structure |
|---|
Probab=99.27 E-value=6.3e-12 Score=116.63 Aligned_cols=101 Identities=20% Similarity=0.284 Sum_probs=87.4
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCc----------------
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS---------------- 246 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~---------------- 246 (760)
|+|.. +|++|.+||.+ |.+|.+|++||.+. . .+.|.|+ +|++.+|+.|++|.|+.+
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~-~---~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDL-G---MDPVPLP--NVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHT-C---CSSEECT--TCCHHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhc-C---CCceecC--CcCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence 77876 78999999998 99999999999752 1 4579998 899999999999999987
Q ss_pred ----------cCCCChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcCCHHhHHHHHH
Q 004336 247 ----------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMG 293 (760)
Q Consensus 247 ----------~~~~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~~~~~al~l~~ 293 (760)
+. ++.+++.+|+.|||+|++..|.+.||.+++..+.. .+..++.+
T Consensus 77 ~~i~~wD~~F~~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikg-kt~eeiR~ 131 (141)
T 1fs1_B 77 DDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKG-KTPEEIRK 131 (141)
T ss_dssp ----HHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-CCHHHHHH
T ss_pred hhhhHHHHHHHh-CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHHHH
Confidence 76 99999999999999999999999999999988743 44444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-10 Score=102.64 Aligned_cols=116 Identities=17% Similarity=0.116 Sum_probs=78.5
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..++.+|..+...|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~---------------- 66 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA------EAWYNLGNAYYKQGDYDEAIEYY---------------- 66 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH------HHHHHHHHHHHHhCCHHHHHHHH----------------
Confidence 44556666666666677777777777777766663 56666677776777777776666
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 522 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~ 522 (760)
++++..+|.+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 67 --~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 67 --QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp --HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 6666666666666667777777777777777777777776776666666666666544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-11 Score=115.59 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhh--------CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTL--------SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 450 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l--------~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~ 450 (760)
....+..+...|..++..|+|++|+..|++++.. +|..+
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~--------------------------------- 53 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEP--------------------------------- 53 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSH---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHH---------------------------------
Confidence 3456778889999999999999999999999998 34332
Q ss_pred cccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Q 004336 451 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 530 (760)
Q Consensus 451 ~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~ 530 (760)
.....+|.+..+++++|.+|...|++++|+..+++++.++|+++.+++.+|.++..+|++++|+.
T Consensus 54 ---------------~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 118 (162)
T 3rkv_A 54 ---------------EWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118 (162)
T ss_dssp ---------------HHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHH
Confidence 01122355556666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhcCCh
Q 004336 531 KAEESIQMKRSF 542 (760)
Q Consensus 531 ~~~~al~l~p~~ 542 (760)
.|++++.++|++
T Consensus 119 ~~~~al~l~p~~ 130 (162)
T 3rkv_A 119 DLKLLLRNHPAA 130 (162)
T ss_dssp HHHHHHHHCGGG
T ss_pred HHHHHHhcCCCC
Confidence 666666666666
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-11 Score=112.47 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=94.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------cHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhh---
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS-------DHE-----RLVYEGWILYDTSHCEEGLRKAEESIQM--- 538 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~-------~~~-----a~~~Lg~i~~~~g~~eeAl~~~~~al~l--- 538 (760)
.+..+.++|..+...|++++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3567889999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ----cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 539 ----KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQAL----NNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 539 ----~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~----~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
+|++ ..+| +++|.++...|++++|+.+|++++
T Consensus 90 ~~e~~pd~----------------------------------------~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 90 RGELNQDE----------------------------------------GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HCCTTSTH----------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccCCCch----------------------------------------HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 9998 6777 999999999999999999999999
Q ss_pred hhcch
Q 004336 611 KIRHT 615 (760)
Q Consensus 611 ~~~~~ 615 (760)
++.|.
T Consensus 130 el~p~ 134 (159)
T 2hr2_A 130 EMIEE 134 (159)
T ss_dssp HHHHH
T ss_pred hcCCC
Confidence 98776
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-10 Score=102.05 Aligned_cols=112 Identities=16% Similarity=0.076 Sum_probs=65.6
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~---------------- 61 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH------VLYSNRSAAYAKKGDYQKAYEDG---------------- 61 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHhhccHHHHHHHH----------------
Confidence 34455555555555566666666666666666553 55555566665666666665555
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 518 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i 518 (760)
.+++..+|.++.+++.+|.++...|++++|+..|+++++.+|++..++..++.+
T Consensus 62 --~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 62 --CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp --HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred --HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 555555555555556666666666666666666666655555555555555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-12 Score=142.78 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+.+++.+|..++.+|+|++|+..|++++.++|++..+.. +.
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~------------------~~----------------- 308 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE------------------KE----------------- 308 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH------------------HH-----------------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh------------------HH-----------------
Confidence 5678899999999999999999999999999999998852110 00
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.....+....+++++|.+|.++|++++|+..|+++++++|++..+++++|.+|..+|++++|+..|++++++
T Consensus 309 --------~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 309 --------SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 011223346789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCh
Q 004336 539 KRSF 542 (760)
Q Consensus 539 ~p~~ 542 (760)
+|++
T Consensus 381 ~P~~ 384 (457)
T 1kt0_A 381 NPQN 384 (457)
T ss_dssp C---
T ss_pred CCCC
Confidence 9999
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-12 Score=143.78 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=125.1
Q ss_pred HHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 381 ~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
+.+.+++.+|..++.+|+|++|+..|+++++.+|++. .++..+|.++...|++++|+.++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~-------------- 63 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA------IYYGNRSLAYLRTECYGYALGDA-------------- 63 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH------HHHHHHHHHHHHhcCHHHHHHHH--------------
Confidence 4567788899999999999999999999999999995 99999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHCCCHHHHHHHHH-----
Q 004336 461 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI--LYDTSHCEEGLRKAE----- 533 (760)
Q Consensus 461 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i--~~~~g~~eeAl~~~~----- 533 (760)
+++++.+|+++.+++++|.+|..+|++++|++.|+++++++|++..++..++.+ +...|++++|+..++
T Consensus 64 ----~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~ 139 (477)
T 1wao_1 64 ----TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 139 (477)
T ss_dssp ----HHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred ----HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 999999999999999999999999999999999999999999999999999998 889999999999999
Q ss_pred ------HHHhhcCCh
Q 004336 534 ------ESIQMKRSF 542 (760)
Q Consensus 534 ------~al~l~p~~ 542 (760)
+++.++|++
T Consensus 140 ~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 140 VDSLDIESMTIEDEY 154 (477)
T ss_dssp TTCCTTSSCCCCTTC
T ss_pred Hhhhhhhhccccccc
Confidence 777777765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-10 Score=100.60 Aligned_cols=112 Identities=13% Similarity=-0.076 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
+.++..+|..+...|++++|+.++ ++++..+|.++.+++.+|.++...|++++|+..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCY------------------SEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHH------------------HHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 478889999999999999999999 99999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHH
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYAL 552 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l 552 (760)
+..|++..++..+|.++...|++++|+..++++++.+|++ .++..++.+.
T Consensus 66 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 66 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998 7777766553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.9e-11 Score=107.87 Aligned_cols=101 Identities=17% Similarity=0.017 Sum_probs=88.8
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
++.+|..++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..+ +
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~lg~~~~~~g~~~~A~~~~------------------~ 75 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPERE------EAWRSLGLTQAENEKDGLAIIAL------------------N 75 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------H
Confidence 45566777777799999999999999999995 99999999999999999999999 9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 510 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~ 510 (760)
+++..+|++..+++.+|.++...|++++|+..|+++++.+|++..
T Consensus 76 ~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999999999999999999999999997653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.3e-11 Score=111.41 Aligned_cols=102 Identities=10% Similarity=-0.021 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCC-------cHH-----HHHHHHHHHHHcCC
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP-------KGV-----LYFRQSLLLLRLNC 490 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~ 490 (760)
...+...|..+...|++++|+..+ .++++.+|+ +.. +|.++|.++..+|+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y------------------~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr 72 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANC------------------RRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS 72 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC
Confidence 356778999999999999999999 999999999 444 99999999999999
Q ss_pred HHHHHHHHHHHHHh-------CCCcHHHH----HHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 491 PEAAMRSLQLARQH-------AASDHERL----VYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 491 ~~~Ai~~l~kal~~-------~p~~~~a~----~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+++|+..|++++++ +|++..+| +++|.++..+|++++|+..|+++++++|++
T Consensus 73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999999999 99999999 999999999999999999999999999887
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.9e-11 Score=107.31 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..+..+|..+...|++++|+.++ .+++..+|.++.+++.+|.++...|++++|+..|+++++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~------------------~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACY------------------GRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHH------------------HHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45555555555555555555555 555555555555555555555555555555555555555
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 541 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~ 541 (760)
.+|+++.+++.+|.++...|++++|+..|++++.++|+
T Consensus 72 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 72 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 55555555555555555555555555555555555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.22 E-value=9.4e-11 Score=131.50 Aligned_cols=139 Identities=13% Similarity=0.023 Sum_probs=109.9
Q ss_pred HHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHH--------HhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHH
Q 004336 374 ESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAI--------LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 445 (760)
Q Consensus 374 ~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~a--------L~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~ 445 (760)
..+......+..++..|........|.+|+...... ....+.. ..++..+|.++...|++++|+.+
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~------~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFL------LAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH------HHHHHHHHHHHHHhcCHHHHHHH
Confidence 334445667777777777777777777777765332 1122222 47899999999999999999999
Q ss_pred HhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Q 004336 446 LQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 525 (760)
Q Consensus 446 l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~ 525 (760)
+ .+++..+|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++...|++
T Consensus 340 ~------------------~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 340 C------------------DKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp H------------------HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred H------------------HHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHH
Q 004336 526 EEGLRK-AEESI 536 (760)
Q Consensus 526 eeAl~~-~~~al 536 (760)
++|... |++.+
T Consensus 402 ~~a~~~~~~~~f 413 (457)
T 1kt0_A 402 NERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 988753 44433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.6e-11 Score=109.09 Aligned_cols=145 Identities=13% Similarity=0.050 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
....+.++..+|.++...|++++|+..+++++...+..........++..+|.++...|++++|..++
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------------ 72 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYY------------ 72 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHH------------
Confidence 45677889999999999999999999999999987765444445568899999999999999999999
Q ss_pred CcHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHH
Q 004336 459 GSLSVIYQMLESDAP------KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 459 ~sl~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p------~~~~a~~~Lg~i~~~~g~~e 526 (760)
.+++...+. ...+++.+|.++...|++++|+..++++++..+ ....++..+|.++...|+++
T Consensus 73 ------~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 146 (164)
T 3ro3_A 73 ------KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 146 (164)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence 666665432 267889999999999999999999999997632 23567889999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q 004336 527 EGLRKAEESIQMKRS 541 (760)
Q Consensus 527 eAl~~~~~al~l~p~ 541 (760)
+|+..+++++++...
T Consensus 147 ~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 147 QAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-10 Score=117.49 Aligned_cols=187 Identities=11% Similarity=0.013 Sum_probs=154.2
Q ss_pred HHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC--CcHHHHH
Q 004336 402 AEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA--PKGVLYF 479 (760)
Q Consensus 402 A~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p--~~~~~~~ 479 (760)
|+..|++.+...+... .++..+|.++...|++++|+.++ .+.+..+| ++.+++.
T Consensus 85 a~~~l~~l~~~~~~~~------~~~~~la~i~~~~g~~eeAL~~l------------------~~~i~~~~~~~~lea~~ 140 (310)
T 3mv2_B 85 NIEELENLLKDKQNSP------YELYLLATAQAILGDLDKSLETC------------------VEGIDNDEAEGTTELLL 140 (310)
T ss_dssp CCHHHHHTTTTSCCCH------HHHHHHHHHHHHHTCHHHHHHHH------------------HHHHTSSCSTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCc------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHhccCCCcCcHHHHH
Confidence 7888998887764443 66789999999999999999999 99999887 8899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004336 480 RQSLLLLRLNCPEAAMRSLQLARQHAAS------DHERLVYEGWILYDTS--HCEEGLRKAEESIQMKRSFEAFFLKAYA 551 (760)
Q Consensus 480 ~la~~~~~~g~~~~Ai~~l~kal~~~p~------~~~a~~~Lg~i~~~~g--~~eeAl~~~~~al~l~p~~~a~~~la~~ 551 (760)
..+.++...|+.+.|.+.++++.+.+|+ ........||+....| ++.+|...|+++....|++.
T Consensus 141 l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~-------- 212 (310)
T 3mv2_B 141 LAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK-------- 212 (310)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH--------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc--------
Confidence 9999999999999999999999999983 2333444466677777 99999999999988888730
Q ss_pred HHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------cchHHHH
Q 004336 552 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI------------RHTRAHQ 619 (760)
Q Consensus 552 l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~------------~~~~a~~ 619 (760)
....+.+ ++..+|++++|...++.+++. +++.++.
T Consensus 213 ------------------------------~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 213 ------------------------------TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp ------------------------------HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred ------------------------------cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 0233333 799999999999999987764 2337888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHH
Q 004336 620 GLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 655 (760)
Q Consensus 620 ~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 655 (760)
+++.+....|+ +|.++++++.+..|+.+.+....
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999997 88999999999999888877654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-11 Score=130.88 Aligned_cols=145 Identities=12% Similarity=-0.006 Sum_probs=91.1
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhc-----------hHHHHHHHHHHHHHccCHHHHHHHHhh
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEG-----------RVAASQLHMLVREHIDNWTIADCWLQL 448 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~-----------~~~a~~~lg~l~~~~g~~~~A~~~l~l 448 (760)
...+..++.+|..++..|+|++|+..|++++...|++..+.. ...++..+|.++...|++++|+.++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~-- 253 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC-- 253 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH--
Confidence 456777889999999999999999999999999998741100 0037888999999999999999998
Q ss_pred hccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHCCCHHH
Q 004336 449 YDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEE 527 (760)
Q Consensus 449 ~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i-~~~~g~~ee 527 (760)
.+++..+|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+ ....+..++
T Consensus 254 ----------------~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 254 ----------------NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp ----------------HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred ----------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999988888 445677888
Q ss_pred HHHHHHHHHhhcCCh
Q 004336 528 GLRKAEESIQMKRSF 542 (760)
Q Consensus 528 Al~~~~~al~l~p~~ 542 (760)
+...|++++...|++
T Consensus 318 a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 318 QKEMYKGIFKGKDEG 332 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHhhCCCCCC
Confidence 888999998888876
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-10 Score=108.20 Aligned_cols=111 Identities=11% Similarity=-0.055 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEAA 494 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A 494 (760)
+..+...|..+...|++++|+..+ .+++.. +|.+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y------------------~~al~~~~~~~~~~~~~~~~~----------------- 55 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAY------------------RDALTRLDTLILREKPGEPEW----------------- 55 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHHHHTSCTTSHHH-----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHHHHhcccCCCCHHHH-----------------
Confidence 477889999999999999999999 777776 3443321
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHH
Q 004336 495 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDAL 573 (760)
Q Consensus 495 i~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl 573 (760)
...+|.+..++.++|.++..+|++++|+..+++++.++|++ .+++.+|.++... +....++..+++++
T Consensus 56 -------~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~----g~~~~A~~~~~~al 124 (162)
T 3rkv_A 56 -------VELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAA----WKLDEAEEDLKLLL 124 (162)
T ss_dssp -------HHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH----hcHHHHHHHHHHHH
Confidence 23457788999999999999999999999999999999999 9999999999987 66778888888888
Q ss_pred hhhHhh
Q 004336 574 KCPSDR 579 (760)
Q Consensus 574 ~~~~~~ 579 (760)
......
T Consensus 125 ~l~p~~ 130 (162)
T 3rkv_A 125 RNHPAA 130 (162)
T ss_dssp HHCGGG
T ss_pred hcCCCC
Confidence 876654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=8.7e-11 Score=110.25 Aligned_cols=91 Identities=11% Similarity=-0.011 Sum_probs=85.1
Q ss_pred HHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Q 004336 434 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP----------EAAMRSLQLARQ 503 (760)
Q Consensus 434 ~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~Ai~~l~kal~ 503 (760)
.+.+++++|+..+ +++++.+|+++++|+++|.++...+++ ++|+..|+++++
T Consensus 13 ~r~~~feeA~~~~------------------~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ 74 (158)
T 1zu2_A 13 DRILLFEQIRQDA------------------ENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL 74 (158)
T ss_dssp HHHHHHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH------------------HHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH
Confidence 3567788888888 999999999999999999999999875 599999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhhcCCh
Q 004336 504 HAASDHERLVYEGWILYDTS-----------HCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g-----------~~eeAl~~~~~al~l~p~~ 542 (760)
++|++.++++++|.+|..+| ++++|+..|+++++++|++
T Consensus 75 ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 75 IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999885 8999999999999999999
|
| >2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.8e-12 Score=119.06 Aligned_cols=94 Identities=17% Similarity=0.298 Sum_probs=53.0
Q ss_pred eEEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCc---------------
Q 004336 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS--------------- 246 (760)
Q Consensus 183 dv~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~--------------- 246 (760)
-|+|+. +|++|.+||.+ |.+|.||++||.++. ..+.|.|+ +|++.+|+.|++|+|+.+
T Consensus 5 ~v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~ 78 (160)
T 2p1m_A 5 KIVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLP--NVTSKILAKVIEYCKRHVEAAASKAEAVEGAAT 78 (160)
T ss_dssp ---CCC---------CHH-HHTCTTTC---------------CCT--TSCHHHHHHHHHC--------------------
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCC--cCcHHHHHHHHHHHHHcccCCCccccccccccc
Confidence 377775 79999999998 899999999998753 33479998 899999999999999987
Q ss_pred ------------cCCCChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcC
Q 004336 247 ------------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (760)
Q Consensus 247 ------------~~~~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~ 283 (760)
+. ++.+++.+|+.|||+|++..|.+.||.+++..+.
T Consensus 79 ~~~~i~~wD~~Fl~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik 126 (160)
T 2p1m_A 79 SDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQTVADMIK 126 (160)
T ss_dssp -----------------------CHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred ccchhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 55 8999999999999999999999999999999874
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.4e-11 Score=102.28 Aligned_cols=105 Identities=13% Similarity=0.064 Sum_probs=97.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCC--hHHHHHH
Q 004336 471 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--FEAFFLK 548 (760)
Q Consensus 471 ~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~--~~a~~~l 548 (760)
+|+++..++.+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++..|+ +
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------ 75 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN------ 75 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC------
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch------
Confidence 57888899999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred HHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcch
Q 004336 549 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-GQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 549 a~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~-g~~~eA~~~~~~Al~~~~~ 615 (760)
..++..+|.++... |++++|++++++++...|.
T Consensus 76 ----------------------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 76 ----------------------------------KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp ----------------------------------HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred ----------------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 78889999999999 9999999999999886653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-10 Score=101.04 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=74.2
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
++.+|..++..|++++|+..|++++..+|+++. ...+++.+|.++...|++++|+.++ .
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~------------------~ 63 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVY---TPNALYWLGESYYATRNFQLAEAQF------------------R 63 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT---HHHHHHHHHHHHHHTTCHHHHHHHH------------------H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc---cHHHHHHHHHHHHHhccHHHHHHHH------------------H
Confidence 455566666666777777777777777776631 0146666666666667776666666 6
Q ss_pred HHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004336 466 QMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 521 (760)
Q Consensus 466 ~al~~~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~ 521 (760)
+++..+|++ +.+++.+|.++...|++++|+..|+++++..|++..+...+..+...
T Consensus 64 ~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 64 DLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 666666666 66666666666666666666666666666666666555544444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=4e-10 Score=103.89 Aligned_cols=117 Identities=14% Similarity=0.069 Sum_probs=87.0
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..++.+|..++..|++++|+..|++++..+|++.. ...++..+|.++...|++++|+.++
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~---------------- 88 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD---QAVLHRNRAACHLKLEDYDKAETEA---------------- 88 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH---HHHHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH---HHHHHHHHHHHHHHHccHHHHHHHH----------------
Confidence 455667777777778888888888888888887510 1266777777777777777777777
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 520 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~ 520 (760)
.+++..+|++..+++.+|.++...|++++|+..|+++++.+|++..++..++.+..
T Consensus 89 --~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 89 --SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp --HHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred --HHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777776666543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-09 Score=117.48 Aligned_cols=202 Identities=11% Similarity=0.024 Sum_probs=157.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhc-----------hHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEG-----------RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~-----------~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
+...|+|++|++.|.+++...|....... ...++..+|.+|...|++++|..++
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~--------------- 78 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFI--------------- 78 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH---------------
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHH---------------
Confidence 34445999999999999999987653221 2246888999999999999999998
Q ss_pred HHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHCCCHHHHH
Q 004336 462 SVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHA------ASDHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 462 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~------p~~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
.+++...+.. ..+...+|.++...|++++|+..+++++... +....++..+|.++...|++++|+
T Consensus 79 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (434)
T 4b4t_Q 79 ---PHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSL 155 (434)
T ss_dssp ---HHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---HHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHH
Confidence 5555443322 2345667888888999999999999998753 334678899999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 530 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNA 609 (760)
Q Consensus 530 ~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~A 609 (760)
..+++++...... . .......++..+|.+|...|++++|...|+++
T Consensus 156 ~~l~~~~~~~~~~------------------------~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 156 ALINDLLREFKKL------------------------D----------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp HHHHHHHHHHTTS------------------------S----------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc------------------------c----------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 9999988653222 0 00011678999999999999999999999999
Q ss_pred Hhhc-----ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 610 LKIR-----HT----RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 610 l~~~-----~~----~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
+.+. +. ..+..+|.++...|++++|...+.++++..+
T Consensus 202 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 202 RTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 8842 22 5677889999999999999999999887654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=100.42 Aligned_cols=106 Identities=9% Similarity=0.009 Sum_probs=100.5
Q ss_pred CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 004336 413 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 492 (760)
Q Consensus 413 ~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 492 (760)
+|++. .++..+|.++...|++++|+.++ .+++..+|.+..+++.+|.++...|+++
T Consensus 2 ~p~~~------~~~~~~~~~~~~~~~~~~A~~~~------------------~~a~~~~~~~~~~~~~~a~~~~~~~~~~ 57 (112)
T 2kck_A 2 VDQNP------EEYYLEGVLQYDAGNYTESIDLF------------------EKAIQLDPEESKYWLMKGKALYNLERYE 57 (112)
T ss_dssp CCSST------TGGGGHHHHHHSSCCHHHHHHHH------------------HHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred CCCcH------HHHHHHHHHHHHhhhHHHHHHHH------------------HHHHHhCcCCHHHHHHHHHHHHHccCHH
Confidence 56664 77788999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC--cHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhcCCh
Q 004336 493 AAMRSLQLARQHAAS--DHERLVYEGWILYDT-SHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 493 ~Ai~~l~kal~~~p~--~~~a~~~Lg~i~~~~-g~~eeAl~~~~~al~l~p~~ 542 (760)
+|+..|+++++..|. +..++..+|.++... |++++|+..+++++...|+.
T Consensus 58 ~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 58 EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999999999 999999999999999 99999999999999998864
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.4e-10 Score=102.50 Aligned_cols=113 Identities=13% Similarity=-0.024 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQ 499 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~Ai~~l~ 499 (760)
...+..+|..+...|++++|+.++ ++++..+|++ ..+++.+|.++...|++++|+..++
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~------------------~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 89 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAY------------------TQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEAS 89 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH------------------HHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH------------------HHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 488999999999999999999999 9999999998 8999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHH
Q 004336 500 LARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALA 553 (760)
Q Consensus 500 kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~ 553 (760)
++++.+|++..+++.+|.++...|++++|+..|++++.++|++ .++..++.+..
T Consensus 90 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 90 KAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998 77766665543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.5e-10 Score=100.32 Aligned_cols=101 Identities=8% Similarity=-0.064 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG---VLYFRQSLLLLRLNCPEAAMRSLQL 500 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~Ai~~l~k 500 (760)
.+++.+|..+...|++++|+..+ .+++..+|++. .+++.+|.++...|++++|+..|++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 64 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLF------------------LSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRD 64 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH------------------HHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45678999999999999999999 99999999988 8999999999999999999999999
Q ss_pred HHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 501 ARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 501 al~~~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+++..|++ +.+++.+|.++...|++++|+..|++++...|++
T Consensus 65 ~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 99999999 8999999999999999999999999999999988
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-10 Score=124.13 Aligned_cols=133 Identities=12% Similarity=0.060 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCc----------chhchHHHHHHHHHHHHHccCHHHHHHHHhhh
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYR----------MFEGRVAASQLHMLVREHIDNWTIADCWLQLY 449 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~----------~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~ 449 (760)
...+..+..+|..++..|+|++|+..|+++++..|..+ .......++..+|.++...|++++|+.++
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~--- 296 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC--- 296 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH---
Confidence 45667788899999999999999999999998433210 00011366777777777777777777777
Q ss_pred ccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Q 004336 450 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 450 ~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
.+++..+|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++...++++++.
T Consensus 297 ---------------~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 297 ---------------LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp ---------------HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777776664
Q ss_pred H
Q 004336 530 R 530 (760)
Q Consensus 530 ~ 530 (760)
.
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3.9e-10 Score=101.17 Aligned_cols=116 Identities=12% Similarity=0.025 Sum_probs=104.8
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+..++.+|..++..|++++|+..|++++..+|++. .++..+|.++...|++++|+.++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~--------------- 61 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM------TYITNQAAVYFEKGDYNKCRELC--------------- 61 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHhccHHHHHHHH---------------
Confidence 467788899999999999999999999999999985 88999999999999999999999
Q ss_pred HHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 004336 462 SVIYQMLESDAPK-------GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 522 (760)
Q Consensus 462 ~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~ 522 (760)
.+++...|.+ +.+++.+|.++...|++++|+..|+++++..| +...+..++.+....
T Consensus 62 ---~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 62 ---EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp ---HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ---HHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 8888888776 88999999999999999999999999999998 578888887776544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.9e-10 Score=103.64 Aligned_cols=139 Identities=16% Similarity=0.036 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 548 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~------~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~l 548 (760)
+.++..+|.++...|++++|+..++++++..+... .++..+|.++...|++++|+..+++++.+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------ 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------
Confidence 56788999999999999999999999998755322 478899999999999999999999999764432
Q ss_pred HHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-----h---HHHHH
Q 004336 549 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-----T---RAHQG 620 (760)
Q Consensus 549 a~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~-----~---~a~~~ 620 (760)
+.. .....++.++|.++...|++++|+.+++++++..+ . .++..
T Consensus 83 ------------------~~~----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (164)
T 3ro3_A 83 ------------------KDR----------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 134 (164)
T ss_dssp ------------------TCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------CCc----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence 000 00156888999999999999999999999998421 1 68889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccC
Q 004336 621 LARVHFLKNNKTTAYEEMTKLIKKARN 647 (760)
Q Consensus 621 La~~~~~~g~~~~A~~~l~~al~~~~~ 647 (760)
+|.++...|++++|...++++++....
T Consensus 135 la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 135 LGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-09 Score=118.14 Aligned_cols=167 Identities=10% Similarity=-0.010 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-----------------ERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~-----------------~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
...+..|..+...|++++|++.|.++++..|... .++..+|.+|...|++++|+..+++++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999887642 36889999999999999999999999987
Q ss_pred cCCh-H------HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh---ccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 539 KRSF-E------AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR---LRKGQALNNLGSVYVDCGQLDLAADCYSN 608 (760)
Q Consensus 539 ~p~~-~------a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~---l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~ 608 (760)
.+.. . ....++.++... +..+..+..+.+++...... ...+.++.++|.+|...|+|++|...+++
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVP----DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCC----SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 6554 2 223334444333 22223333333333333322 11267888899999999999999999998
Q ss_pred HHhh------cch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 609 ALKI------RHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 609 Al~~------~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
++.. .+. .++..++++|...|++++|...+++++...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 8873 111 6888899999999999999999988877654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-11 Score=136.88 Aligned_cols=126 Identities=14% Similarity=0.054 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.++..+|..+...|++++|+.++ +++++.+|+++.+++++|.+|.++|++++|+..|+++++
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~------------------~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 68 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFY------------------SQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 68 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH------------------HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44556778888999999999999 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 583 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~ 583 (760)
++|+++.+++++|.+|..+|++++|+..|+++++++|++ .
T Consensus 69 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----------------------------------------~ 108 (477)
T 1wao_1 69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD----------------------------------------K 108 (477)
T ss_dssp SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----------------------------------------T
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------------H
Confidence 999999999999999999999999999999999999998 4
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHH
Q 004336 584 QALNNLGSV--YVDCGQLDLAADCYS 607 (760)
Q Consensus 584 ~a~~~Lg~~--y~~~g~~~eA~~~~~ 607 (760)
.++..++.+ +...|++++|+..++
T Consensus 109 ~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 109 DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp THHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455566666 777888999999988
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.5e-11 Score=126.81 Aligned_cols=136 Identities=16% Similarity=0.085 Sum_probs=87.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-----------------ERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~-----------------~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
+..+..++.+|..+...|++++|+..|++++...|.+. .+++++|.++..+|++++|+..|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44567788999999999999999999999999999876 3788888888888888888888888
Q ss_pred HHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 535 SIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 535 al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
+++++|++ ..+++++|.+|...|++++|+..|+++++++|
T Consensus 256 al~~~p~~----------------------------------------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 256 VLTEEEKN----------------------------------------PKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp HHHHCTTC----------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred HHHhCCCC----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 88888888 67888888888888888888888888888766
Q ss_pred h--HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhccC
Q 004336 615 T--RAHQGLARVH-FLKNNKTTAYEEMTKLIKKARN 647 (760)
Q Consensus 615 ~--~a~~~La~~~-~~~g~~~~A~~~l~~al~~~~~ 647 (760)
. .++..++.+. ...+..+++...|.+++...|.
T Consensus 296 ~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 296 DDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp ------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 5 6777777763 3445566666666666666653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-09 Score=97.24 Aligned_cols=114 Identities=8% Similarity=-0.061 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
..++..+|.++...|++++|+.++ .+++..+|.++.+++.+|.++...|++++|+..+++++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~------------------~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHY------------------DKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHH------------------HHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 367889999999999999999999 99999999999999999999999999999999999999
Q ss_pred HhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 004336 503 QHAASD-------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554 (760)
Q Consensus 503 ~~~p~~-------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~ 554 (760)
...|.+ ..+++.+|.++...|++++|+..|++++...|+......++.+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 998876 8899999999999999999999999999999966666666655443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-10 Score=103.01 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 396 RKEYDEAEHLFEAILTL---SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 396 ~g~~~eA~~~~~~aL~l---~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
.|++++|+..|+++++. +|++. .++..+|.++...|++++|+.++ ++++..+|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~------~~~~~lg~~~~~~~~~~~A~~~~------------------~~al~~~p 58 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLA------ECYLGLGSTFRTLGEYRKAEAVL------------------ANGVKQFP 58 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCT
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCC
Confidence 35777777777777776 35442 66666777777777777777766 67777777
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 518 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i 518 (760)
+++.+++.+|.++...|++++|+..|++++...|+++........+
T Consensus 59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 7777777777777777777777777777777766666554433333
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-09 Score=116.96 Aligned_cols=114 Identities=10% Similarity=-0.074 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH----------------hCCCcHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE----------------SDAPKGVLYFRQSLLLLR 487 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~----------------~~p~~~~~~~~la~~~~~ 487 (760)
..+..+|..+...|++++|+..+ ++++. .+|.+..+++++|.+|.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y------------------~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKY------------------TKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH------------------HHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999999999 77776 778889999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcc
Q 004336 488 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 555 (760)
Q Consensus 488 ~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~ 555 (760)
+|++++|+.+++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++ .++..++.++...
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 8888888888776
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.4e-10 Score=100.44 Aligned_cols=89 Identities=13% Similarity=0.068 Sum_probs=81.8
Q ss_pred ccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 004336 436 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES---DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 512 (760)
Q Consensus 436 ~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~ 512 (760)
.|++++|+.++ ++++.. +|+++.+++.+|.+|...|++++|+..|+++++.+|+++.++
T Consensus 3 ~g~~~~A~~~~------------------~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 64 (117)
T 3k9i_A 3 LGLEAQAVPYY------------------EKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64 (117)
T ss_dssp ----CCCHHHH------------------HHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcHHHHHHHH------------------HHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHH
Confidence 56777777777 999999 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 513 VYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 513 ~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+++|.++...|++++|+..+++++...|++
T Consensus 65 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999988
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=102.36 Aligned_cols=88 Identities=11% Similarity=-0.034 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHH----------HHHHHHhhhccccccCCcCcHHHHHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT----------IADCWLQLYDRWSSVDDIGSLSVIYQM 467 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~----------~A~~~l~l~~~~~~~~d~~sl~~~~~a 467 (760)
.|++|+..|+++++++|++. .++..+|.++...++++ +|+..+ +++
T Consensus 17 ~feeA~~~~~~Ai~l~P~~a------ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~l------------------e~A 72 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDA------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKF------------------EEA 72 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH------------------HHH
T ss_pred HHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHH------------------HHH
Confidence 89999999999999999996 99999999999988764 777777 999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcH
Q 004336 468 LESDAPKGVLYFRQSLLLLRLN-----------CPEAAMRSLQLARQHAASDH 509 (760)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g-----------~~~~Ai~~l~kal~~~p~~~ 509 (760)
++++|++..+|+++|.+|..+| ++++|+++|++|++++|++.
T Consensus 73 L~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 73 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999885 89999999999999999975
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-08 Score=87.82 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++++.
T Consensus 6 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 6 ERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 334444444444444444444444444444444444444444444444444444444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-08 Score=82.98 Aligned_cols=82 Identities=12% Similarity=0.091 Sum_probs=74.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAY 550 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~ 550 (760)
|.++..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++++|++ .++..+|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999 66666665
Q ss_pred HHH
Q 004336 551 ALA 553 (760)
Q Consensus 551 ~l~ 553 (760)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.7e-08 Score=87.25 Aligned_cols=83 Identities=11% Similarity=0.104 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHH
Q 004336 493 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLED 571 (760)
Q Consensus 493 ~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~lee 571 (760)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|++ .+++.+|.++... +....++..+++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ----GDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999 9999999999887 566777788888
Q ss_pred HHhhhHhh
Q 004336 572 ALKCPSDR 579 (760)
Q Consensus 572 Al~~~~~~ 579 (760)
+++.....
T Consensus 79 al~~~~~~ 86 (115)
T 2kat_A 79 GLAAAQSR 86 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHhcccc
Confidence 88877654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.81 E-value=6.4e-06 Score=92.89 Aligned_cols=304 Identities=12% Similarity=-0.044 Sum_probs=175.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC-HHHHHHHHhhhccccccCCcCcHHHHHHHHHh---CC
Q 004336 397 KEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN-WTIADCWLQLYDRWSSVDDIGSLSVIYQMLES---DA 472 (760)
Q Consensus 397 g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~-~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~---~p 472 (760)
|+++.+..+|++++...|.. ..|..........+. .+... ..|+.++.. +|
T Consensus 28 ~~~e~~~~iferal~~~ps~-------~LW~~Y~~f~~~~~~~~~~i~------------------~~fe~al~~vg~d~ 82 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNL-------DLWMLYIEYVRKVSQKKFKLY------------------EVYEFTLGQFENYW 82 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCH-------HHHHHHHHHHHHHC----CTH------------------HHHHHHHHHSTTCT
T ss_pred CCHHHHHHHHHHHhccCCCH-------HHHHHHHHHHHHhCchHHHHH------------------HHHHHHHHHcCCCc
Confidence 59999999999999988833 555554444444332 11122 234666653 78
Q ss_pred CcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH--------------HHCCCHHHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLL----RLNCPEAAMRSLQLARQHAASDHERLVYEGWIL--------------YDTSHCEEGLRKAEE 534 (760)
Q Consensus 473 ~~~~~~~~la~~~~----~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~--------------~~~g~~eeAl~~~~~ 534 (760)
.+..+|......+. ..|+.+.+...|++++...+.+.+.+...-.-+ ...+.+..|...|++
T Consensus 83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~ 162 (493)
T 2uy1_A 83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQ 162 (493)
T ss_dssp TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHH
Confidence 88899988887654 457788999999999996444333222111111 112334455555665
Q ss_pred HHhhcCC-h-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 535 SIQMKRS-F-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSN 608 (760)
Q Consensus 535 al~l~p~-~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~Lg~~y~~~g~~~eA~~~~~~ 608 (760)
+....+. . ..|......-... +..... .+..+.....|++++.. +..|...+..+...|+.++|...|++
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~---~~~~~~-~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~er 238 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMEN---GMKLGG-RPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVER 238 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTC---TTCCCH-HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcC---CccCcc-hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544333 1 3343322222111 111111 01133344455555332 78899999999999999999999999
Q ss_pred HHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------------cCcHHHHHHHH----hcCCHHHHHHHHH
Q 004336 609 ALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKA-------------RNNASAYEKRS----EYCDRELTRADLE 669 (760)
Q Consensus 609 Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~-------------~~~~~~~~~~~----~~~~~~~A~~~l~ 669 (760)
|+.. |. ..+...+.. .+.++. ++++.+.. +....++.... ..+..+.|...|+
T Consensus 239 Ai~~-P~~~~l~~~y~~~----~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~ 310 (493)
T 2uy1_A 239 GIEM-SDGMFLSLYYGLV----MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFI 310 (493)
T ss_dssp HHHH-CCSSHHHHHHHHH----TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHhC-CCcHHHHHHHHhh----cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9998 76 333322222 111111 22222111 00111221111 2356788888888
Q ss_pred HHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHH
Q 004336 670 MVTQLDPLRVYPYRYRAAVLMDSH-KENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 670 kal~l~p~~~~~~~~La~~~~~~g-~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~a 738 (760)
+| ...+.....|...|.+....+ +.+.|...|+.+++..|+.+.+++. +.+....|+.+.|...|+++
T Consensus 311 ~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 311 EL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred Hh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88 433334455655566555555 5888999999998888887766644 55666778888888888876
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.3e-09 Score=91.37 Aligned_cols=94 Identities=10% Similarity=-0.010 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
..++..+|.++...|++++|+.++ .+++..+|.++.+++++|.++...|++++|+..|++++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~------------------~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCY------------------DQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356777788888888888888877 78888888888888888888888888888888888888
Q ss_pred HhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 004336 503 QHAASD------HERLVYEGWILYDTSHCEEGLRKAEE 534 (760)
Q Consensus 503 ~~~p~~------~~a~~~Lg~i~~~~g~~eeAl~~~~~ 534 (760)
+++|++ ..+++.+|.++...|++++|+..+++
T Consensus 66 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 66 RYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp TSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 888877 77777788887777777766555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-08 Score=86.05 Aligned_cols=73 Identities=8% Similarity=0.058 Sum_probs=67.8
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.+|+++.+++.+|.+|...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999987654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.75 E-value=7.6e-08 Score=80.59 Aligned_cols=83 Identities=12% Similarity=-0.024 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
..++..+|.++...|++++|+.++ .+++..+|++..+++.+|.++...|++++|+..|++++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~------------------~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYY------------------QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHH------------------HHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 478889999999999999999999 99999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCC
Q 004336 503 QHAASDHERLVYEGWILYDTS 523 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g 523 (760)
+.+|++..++..+|.++...|
T Consensus 71 ~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 71 ELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHCTTCHHHHHHHHHHHHHHC
T ss_pred hcCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999988765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.9e-09 Score=89.59 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=87.3
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+.+++.+|..++..|++++|+..|++++..+|+++ .++..+|.++...|++++|+..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~--------------- 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP------VGYSNKAMALIKLGEYTQAIQMC--------------- 61 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHhcCHHHHHHHH---------------
Confidence 356788899999999999999999999999999995 89999999999999999999999
Q ss_pred HHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 462 SVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQL 500 (760)
Q Consensus 462 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~Ai~~l~k 500 (760)
++++..+|++ ..+++.+|.++...|+++.|+..+++
T Consensus 62 ---~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 62 ---QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp ---HHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred ---HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 9999999999 99999999999999998888776654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.72 E-value=8.3e-08 Score=107.80 Aligned_cols=129 Identities=12% Similarity=-0.004 Sum_probs=107.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc-----CChHHHH
Q 004336 480 RQSLLLLRLNCPEAAMRSLQLARQH-----AAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQMK-----RSFEAFF 546 (760)
Q Consensus 480 ~la~~~~~~g~~~~Ai~~l~kal~~-----~p~---~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~-----p~~~a~~ 546 (760)
..+..+..+|++++|+..+++++++ .|+ ....+.+||.+|..+|+|++|+.++++++++. |++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H---- 389 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN---- 389 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC----
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC----
Confidence 3445677899999999999999986 344 45678999999999999999999999999752 221
Q ss_pred HHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------cch---H
Q 004336 547 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-------RHT---R 616 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-------~~~---~ 616 (760)
..-+..+++||.+|..+|++++|+.+|++|+++ +|+ .
T Consensus 390 ---------------------------------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 436 (490)
T 3n71_A 390 ---------------------------------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD 436 (490)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 011788999999999999999999999999983 444 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004336 617 AHQGLARVHFLKNNKTTAYEEMTKLIKKA 645 (760)
Q Consensus 617 a~~~La~~~~~~g~~~~A~~~l~~al~~~ 645 (760)
....++.++..+|.+++|...|.++.+..
T Consensus 437 ~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 437 LEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999876654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-07 Score=86.16 Aligned_cols=110 Identities=12% Similarity=0.013 Sum_probs=67.8
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhcC
Q 004336 465 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~~~~~al~l~p 540 (760)
+++.+.....+. +|.+|...+..++|+++|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+.
T Consensus 19 ~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-- 90 (138)
T 1klx_A 19 VKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-- 90 (138)
T ss_dssp HHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--
Confidence 666655433332 666666666666666666666654 456666666666666 66666666666666543
Q ss_pred ChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcchH
Q 004336 541 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKIRHTR 616 (760)
Q Consensus 541 ~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~~~~~ 616 (760)
.+ +.+++++|.+|.. .+++++|+.+|+++.+.++..
T Consensus 91 g~----------------------------------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~ 130 (138)
T 1klx_A 91 ND----------------------------------------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSED 130 (138)
T ss_dssp TC----------------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred CC----------------------------------------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHH
Confidence 22 4566666666666 667777777777776666655
Q ss_pred HHHHHH
Q 004336 617 AHQGLA 622 (760)
Q Consensus 617 a~~~La 622 (760)
+...|+
T Consensus 131 A~~~l~ 136 (138)
T 1klx_A 131 ACGILN 136 (138)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 555444
|
| >1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=3.6e-08 Score=85.11 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=70.5
Q ss_pred eEEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCc--------------c
Q 004336 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS--------------L 247 (760)
Q Consensus 183 dv~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~--------------~ 247 (760)
-|+|.. +|++|.+||.+ |.+|.+++.||.+++ |.....|.|+ +|+..+|+.|++|.|.-+ -
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp--~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w 80 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELK--QFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF 80 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEET--TSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecC--CcCHHHHHHHHHHHHHhcccCCCccccccCCCc
Confidence 477876 88999999997 999999999999877 7777899998 799999999999998754 2
Q ss_pred CCCChhhHHHHHHHHhhhCh
Q 004336 248 NGVTPNLLLEILIFANKFCC 267 (760)
Q Consensus 248 ~~~~~~~v~~ll~~a~~~~~ 267 (760)
. ++.+++.+|+.|||+|.+
T Consensus 81 ~-vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 81 E-IPTEMSLELLLAADYLSI 99 (99)
T ss_dssp C-CCHHHHHHHHHHHHHHCC
T ss_pred c-CCHHHHHHHHHHHHHhCc
Confidence 3 889999999999999874
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.65 E-value=5.3e-07 Score=95.99 Aligned_cols=149 Identities=14% Similarity=0.095 Sum_probs=108.1
Q ss_pred HHHHHHhhhHHHhc---CCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHc---cCHH-HHHHHHhhhcccccc
Q 004336 383 LLAFHQLGCVRLLR---KEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHI---DNWT-IADCWLQLYDRWSSV 455 (760)
Q Consensus 383 A~a~~~lG~~~l~~---g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~---g~~~-~A~~~l~l~~~~~~~ 455 (760)
|..++..|..++.+ .++.+|+.+|+++++++|++. .++..++.++... +.+. ....-+ ...
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a------~A~A~la~a~~~~~~~~~~~~~~~~~l--~~a---- 263 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT------YARAEKALVDIVRHSQHPLDEKQLAAL--NTE---- 263 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHHHHSCCCHHHHHHH--HHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhccCCCchhhHHHH--HHH----
Confidence 33444445555544 356899999999999999996 6666666666421 1000 000000 000
Q ss_pred CCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 456 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 456 ~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
+. -..++..+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|
T Consensus 264 -----~~-a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 264 -----ID-NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp -----HH-HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----HH-HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 00 01233567999999999999999999999999999999999975 678899999999999999999999999
Q ss_pred HhhcCChHHHHHHHH
Q 004336 536 IQMKRSFEAFFLKAY 550 (760)
Q Consensus 536 l~l~p~~~a~~~la~ 550 (760)
+.++|....++....
T Consensus 337 lrL~P~~~t~~~~~~ 351 (372)
T 3ly7_A 337 FNLRPGANTLYWIEN 351 (372)
T ss_dssp HHHSCSHHHHHHHHH
T ss_pred HhcCCCcChHHHHhC
Confidence 999999855544433
|
| >2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-08 Score=85.08 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=64.6
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccC--CCCCCccceeEecCCCCCHHHHHHHHhccccCc-----------cCC
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSVTGS-----------LNG 249 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~--~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~-----------~~~ 249 (760)
|+|.. +|++|.+||.+ |.+|.+++.||.+ ++.|+....|.|+ +|+..+|+.|++|.|.-+ -.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~- 78 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP- 78 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECS--SCCHHHHHHHHHHHHHHHHHHSCCSCCCCCC-
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCC--CCCHHHHHHHHHHHHHccccCCCcccCCCcc-
Confidence 67765 88999999997 9999999999974 4578878899998 899999999999998754 23
Q ss_pred CChhhHHHHHHHHhhhCh
Q 004336 250 VTPNLLLEILIFANKFCC 267 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~ 267 (760)
++.+.+.+|+.|||.|.+
T Consensus 79 vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 79 IAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCTTTHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 889999999999999874
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-07 Score=81.32 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=64.0
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 583 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~ 583 (760)
.+|+++.+++.+|.++...|++++|+..|+++++++|++ .
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------------------------------~ 41 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY----------------------------------------V 41 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----------------------------------------T
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------------------------------H
Confidence 468999999999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
.++..+|.+|...|++++|+..|++++++.+.
T Consensus 42 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 42 GTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 88999999999999999999999999986543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.62 E-value=3.2e-05 Score=87.13 Aligned_cols=207 Identities=10% Similarity=-0.049 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHH
Q 004336 491 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLL 569 (760)
Q Consensus 491 ~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~l 569 (760)
.+.....|++++...|..+..|...+..+...|+.++|...|++++.. |.. ..++..+...... ...+.+
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~--------~~~~~l 265 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE--------AVYGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT--------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchh--------HHHHHH
Confidence 345678999999999999999999999999999999999999999999 988 5555443331110 011111
Q ss_pred HHHHhhhHh-------hccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 570 EDALKCPSD-------RLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTK 640 (760)
Q Consensus 570 eeAl~~~~~-------~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~ 640 (760)
.++...+.. ......+|...+......++.+.|...|++| ...+. ..+...|.+....|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~----------- 333 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYAT----------- 333 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHC-----------
Confidence 111100000 0001233444444444444444455555444 21111 22222222222222
Q ss_pred HHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-H
Q 004336 641 LIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-A 719 (760)
Q Consensus 641 al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a 719 (760)
++.+.|...|+.+++..|+.+..+...+......|+.+.|...|+++ +....++.. .
T Consensus 334 ------------------~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~ 391 (493)
T 2uy1_A 334 ------------------GSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMI 391 (493)
T ss_dssp ------------------CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHH
T ss_pred ------------------CChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHH
Confidence 24566777777777777777666666677777788888888888887 334555544 4
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 004336 720 AFHEHTGDVLGALRDCRAALS 740 (760)
Q Consensus 720 ~~~~~~g~~~~A~~~~~~aL~ 740 (760)
.+-...|+.+.+...+++++.
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 455556888888888888774
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=4.4e-07 Score=83.70 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhH
Q 004336 489 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSL 568 (760)
Q Consensus 489 g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~ 568 (760)
+++++|+.+|+++.+....... +|.+|...+..++|+.+|+++.+. .+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~-------------------------- 56 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NS-------------------------- 56 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TC--------------------------
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CC--------------------------
Confidence 4688999999999988754443 999999999999999999999865 33
Q ss_pred HHHHHhhhHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcchHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 004336 569 LEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRAHQGLARVHFL----KNNKTTAYEEMTK 640 (760)
Q Consensus 569 leeAl~~~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~----~g~~~~A~~~l~~ 640 (760)
+.+++++|.+|.. .+++++|+.+|+++.+.+.+.+.++||.+|.. .+++++|+.+|++
T Consensus 57 --------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 57 --------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp --------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 6788999999998 89999999999999999889999999999999 8999999999999
Q ss_pred HHHhcc
Q 004336 641 LIKKAR 646 (760)
Q Consensus 641 al~~~~ 646 (760)
+.+...
T Consensus 123 Aa~~g~ 128 (138)
T 1klx_A 123 ACRLGS 128 (138)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 887654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-07 Score=103.76 Aligned_cols=123 Identities=11% Similarity=0.018 Sum_probs=101.9
Q ss_pred hcCCHHHHHHHHHHHHhhC-----CCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 395 LRKEYDEAEHLFEAILTLS-----PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l~-----P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
.+|+|++|+.+++++|++. |+++. ....+..+|.+|..+|+|++|+.++ ++++.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~---~a~~~~nLa~~y~~~g~~~eA~~~~------------------~~aL~ 379 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLY---VLRLLSIASEVLSYLQAYEEASHYA------------------RRMVD 379 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHHhcCHHHHHHHH------------------HHHHH
Confidence 4459999999999999763 55542 2467899999999999999999999 55554
Q ss_pred h--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHH
Q 004336 470 S--------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-----AASD---HERLVYEGWILYDTSHCEEGLRKAE 533 (760)
Q Consensus 470 ~--------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-----~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~ 533 (760)
. +|+-+..+.++|.+|..+|++++|+..|++|+++ .|++ .+....++.++..+|.+++|...|+
T Consensus 380 i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~ 459 (490)
T 3n71_A 380 GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYH 459 (490)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2556778999999999999999999999999975 4555 4567789999999999999999999
Q ss_pred HHHhh
Q 004336 534 ESIQM 538 (760)
Q Consensus 534 ~al~l 538 (760)
++.+.
T Consensus 460 ~~~~~ 464 (490)
T 3n71_A 460 KMREA 464 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.57 E-value=9.8e-08 Score=81.77 Aligned_cols=89 Identities=10% Similarity=-0.047 Sum_probs=59.8
Q ss_pred HHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004336 428 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV-LYFRQSLLLLRLNCPEAAMRSLQLARQHAA 506 (760)
Q Consensus 428 ~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~Ai~~l~kal~~~p 506 (760)
..|..+...|++++|+..+ ++++..+|++.. +++.+|.++...|++++|+..|+++++.+|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~------------------~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQAL------------------EEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHH------------------HHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHH------------------HHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4566666677777777777 777777777776 777777777777777777777777777777
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 507 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 507 ~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
++..++.+ +.+.+|+..|++++..+|++
T Consensus 67 ~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 67 DSPALQAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp TSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred CcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence 76666533 45566666666666555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-07 Score=81.28 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-RLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~-a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.+.+|..+...|++++|+..|+++++.+|++.. +++.+|.++...|++++|+..|+++++++|++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 357889999999999999999999999999999 99999999999999999999999999999998
|
| >3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=7.2e-07 Score=84.93 Aligned_cols=98 Identities=23% Similarity=0.255 Sum_probs=79.7
Q ss_pred eeEEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCC----CCccceeEecCCCCCHHHHHHHHhccccCc----------
Q 004336 182 RNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGS---------- 246 (760)
Q Consensus 182 ~dv~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~----e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~---------- 246 (760)
.-|+|.. +|++|.++|.+ |..|..++.|+...-. +.....|.|+ +|+..+|+.|++|.+.-+
T Consensus 7 ~~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Iplp--nV~s~iL~kVieyc~~h~~~~~~~~~~~ 83 (169)
T 3v7d_A 7 SNVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVP--NVRSSVLQKVIEWAEHHRDSNFPDEDDD 83 (169)
T ss_dssp CEEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECT--TCCHHHHHHHHHHHHHTTTCCCCC----
T ss_pred CeEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeC--CCCHHHHHHHHHHHHHcccCCCcccccc
Confidence 3577765 68899999997 8899999999974322 3444789998 799999999999987643
Q ss_pred ---------------cCCCChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcC
Q 004336 247 ---------------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (760)
Q Consensus 247 ---------------~~~~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~ 283 (760)
+. ++.+.+.+|+.|||+|++..|.+.||..++..+.
T Consensus 84 ~~~~~~~i~~wD~~Fl~-vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 84 DSRKSAPVDSWDREFLK-VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp ----CCCCCHHHHHHTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred cccccccccHHHHHHHc-CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 33 7889999999999999999999999999987763
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-05 Score=83.92 Aligned_cols=143 Identities=13% Similarity=0.068 Sum_probs=100.8
Q ss_pred HHHHHHHc---CCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHH
Q 004336 589 LGSVYVDC---GQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDREL 663 (760)
Q Consensus 589 Lg~~y~~~---g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~ 663 (760)
.|..+... ..+.+|+.+|++|++.+|. .++..++.+|..... ..+........+ ..
T Consensus 202 ra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~-------------~~~~~~~~~~~l------~~ 262 (372)
T 3ly7_A 202 QAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHS-------------QHPLDEKQLAAL------NT 262 (372)
T ss_dssp HHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-------------HSCCCHHHHHHH------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc-------------cCCCchhhHHHH------HH
Confidence 34444443 3458999999999999888 777777777762110 111111111111 22
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004336 664 TRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDP 743 (760)
Q Consensus 664 A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P 743 (760)
+... ..++..+|.++.++..++.++...|++++|+..+++|+.++|+...+.+.+.++...|++++|++.|++|+.++|
T Consensus 263 a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 263 EIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 2221 134467899999999999988888999999999999999998744444668899889999999999999999999
Q ss_pred CcHHHHHHH
Q 004336 744 NDQEMLELH 752 (760)
Q Consensus 744 ~~~~~l~~~ 752 (760)
..+ ++.+.
T Consensus 342 ~~~-t~~~~ 349 (372)
T 3ly7_A 342 GAN-TLYWI 349 (372)
T ss_dssp SHH-HHHHH
T ss_pred CcC-hHHHH
Confidence 876 44443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.8e-06 Score=72.51 Aligned_cols=72 Identities=11% Similarity=-0.018 Sum_probs=68.2
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 471 DAPKGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 471 ~p~~~~~~~~la~~~~~~g~---~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+|+++.++..+|.++...++ .++|...++++++.+|+++.+++.+|.+++..|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 58999999999999987766 7999999999999999999999999999999999999999999999998875
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=82.11 Aligned_cols=85 Identities=14% Similarity=0.028 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCc-HHHH-HHHHHHHH-cCCHHH
Q 004336 661 RELTRADLEMVTQLDPL--RVYPYRYRAAVLMDS-----HKENEAIAELSRAIAFKADL-HLLH-LRAAFHEH-TGDVLG 730 (760)
Q Consensus 661 ~~~A~~~l~kal~l~p~--~~~~~~~La~~~~~~-----g~~~eAi~~l~kal~~~p~~-~~~~-l~a~~~~~-~g~~~~ 730 (760)
..+|...+++++++||+ +..+|..+|.+|... |+.++|..+|++|++++|+. ...+ .-+.++.. .|++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 46788889999999999 677999999999985 99999999999999999964 5554 44666665 599999
Q ss_pred HHHHHHHHHhcCCCc
Q 004336 731 ALRDCRAALSVDPND 745 (760)
Q Consensus 731 A~~~~~~aL~l~P~~ 745 (760)
|.+.+++++..+|..
T Consensus 259 a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 259 FDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999999988773
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=89.10 Aligned_cols=101 Identities=10% Similarity=-0.025 Sum_probs=81.1
Q ss_pred cCCHHHHHHHHHHHHhh-----CCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHH----HHHH
Q 004336 658 YCDRELTRADLEMVTQL-----DPLRV---YPYRYRAAVLMDSHKENEAIAELSRAIAF-----KADLHLLH----LRAA 720 (760)
Q Consensus 658 ~~~~~~A~~~l~kal~l-----~p~~~---~~~~~La~~~~~~g~~~eAi~~l~kal~~-----~p~~~~~~----l~a~ 720 (760)
+|++++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++++ .|+++..- -.|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46667777777776653 34444 56789999999999999999999999964 46666433 2389
Q ss_pred HHHHcCCHHHHHHHHHHHHh-----cCCCcHHHHHHHHHhhcc
Q 004336 721 FHEHTGDVLGALRDCRAALS-----VDPNDQEMLELHSRVYSH 758 (760)
Q Consensus 721 ~~~~~g~~~~A~~~~~~aL~-----l~P~~~~~l~~~~r~~~~ 758 (760)
+|..+|++++|+..|++|++ +.|+||.+.++++.+.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~~~ 433 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIESH 433 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHCC
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHhcC
Confidence 99999999999999999997 689999999999887753
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=74.71 Aligned_cols=96 Identities=14% Similarity=0.063 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CcH-HHHHHHHHHHHcCCHHHHHHHH
Q 004336 662 ELTRADLEMVTQLDPLRVYPYRYRAAVLMDSH---KENEAIAELSRAIAFK-A-DLH-LLHLRAAFHEHTGDVLGALRDC 735 (760)
Q Consensus 662 ~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g---~~~eAi~~l~kal~~~-p-~~~-~~~l~a~~~~~~g~~~~A~~~~ 735 (760)
..+...|.+.++.+|.+..+.+++|+++.+.+ +.++++..++..+... | +.. .++..+..+.++|+|++|++++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 55677788888889999999999999999998 6779999999999988 6 223 4446688889999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHhhc
Q 004336 736 RAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 736 ~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
+++|+++|+|..+..+...+.+
T Consensus 95 ~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999988766653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=68.48 Aligned_cols=74 Identities=16% Similarity=0.073 Sum_probs=63.0
Q ss_pred CCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 004336 675 DPLRVYPYRYRAAVLMDSHK---ENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEM 748 (760)
Q Consensus 675 ~p~~~~~~~~La~~~~~~g~---~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~ 748 (760)
+|+++..+..+|.+++..++ .++|...++++++.+|++.... +.|..+...|+|++|+..|+++++.+|+++..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 68889999999998876655 7999999999999999998766 55888888899999999999999999885443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-05 Score=73.90 Aligned_cols=85 Identities=13% Similarity=0.064 Sum_probs=76.4
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLARQHA-A-SDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g---~~~~Ai~~l~kal~~~-p-~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
|.+.+..++.+.++.|++|.++.+.+ +.++++..++..++.+ | ...+++++||..+++.|+|++|..++++++++
T Consensus 21 y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 21 FQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 47777788999999999999999998 6679999999999998 7 56899999999999999999999999999999
Q ss_pred cCCh-HHHHHH
Q 004336 539 KRSF-EAFFLK 548 (760)
Q Consensus 539 ~p~~-~a~~~l 548 (760)
+|++ .+...+
T Consensus 101 eP~n~QA~~Lk 111 (152)
T 1pc2_A 101 EPQNNQAKELE 111 (152)
T ss_dssp CTTCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 9999 554443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-05 Score=88.06 Aligned_cols=108 Identities=15% Similarity=-0.001 Sum_probs=85.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc-----CChHHHHHHH
Q 004336 483 LLLLRLNCPEAAMRSLQLARQH-----AASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMK-----RSFEAFFLKA 549 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~-----~p~~---~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~-----p~~~a~~~la 549 (760)
.-+..+|++++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+. |++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H------- 367 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH------- 367 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC-------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC-------
Confidence 3456789999999999999975 3444 4678999999999999999999999999752 221
Q ss_pred HHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------cch---HHHH
Q 004336 550 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-------RHT---RAHQ 619 (760)
Q Consensus 550 ~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-------~~~---~a~~ 619 (760)
...+..++++|.+|..+|++++|+.+|++|+++ +|+ .++.
T Consensus 368 ------------------------------p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~ 417 (429)
T 3qwp_A 368 ------------------------------PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLIL 417 (429)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred ------------------------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 011788999999999999999999999999984 343 5556
Q ss_pred HHHHHHHH
Q 004336 620 GLARVHFL 627 (760)
Q Consensus 620 ~La~~~~~ 627 (760)
+|+.+...
T Consensus 418 ~l~~~~~e 425 (429)
T 3qwp_A 418 LLEECDAN 425 (429)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
|
| >3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-05 Score=70.25 Aligned_cols=94 Identities=11% Similarity=0.046 Sum_probs=77.1
Q ss_pred eEEEEecCeEeehhHHHHhcCCH-HHHhhccCCCC----CCccceeEecCCCCCHHHHHHHHhccccCccCCCChh-hHH
Q 004336 183 NVVFRIHEEKIECDRQKFAALSA-PFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLL 256 (760)
Q Consensus 183 dv~~~~~~~~~~~hr~~la~~s~-yf~amf~~~~~----e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~-~v~ 256 (760)
=|+|-|||..|...+..|....+ +|.+||.++.. .....++-| +-+|..++.|++|..||+|. ++.+ .+.
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi---DRdp~~F~~IL~~lr~g~l~-~p~~~~~~ 82 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI---DRDPTYFGPVLNYLRHGKLV-INKDLAEE 82 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE---CSCHHHHHHHHHHHHHSCCC-CCTTSCHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe---cCChHHHHHHHHHhCCCeeC-CCCCCCHH
Confidence 47889999999999999998864 68999987521 113456766 68999999999999999996 6554 357
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHh
Q 004336 257 EILIFANKFCCERLKDACDRKLAS 280 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~ 280 (760)
.++.-|..|+++.|++.|.+.+..
T Consensus 83 ~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 83 GVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc
Confidence 899999999999999999987653
|
| >1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=4.1e-06 Score=73.77 Aligned_cols=81 Identities=23% Similarity=0.371 Sum_probs=63.8
Q ss_pred eEEEE-ecCeEeehhHHHHhcCCHHHHhhcc--CCCCCCccceeEecCCCCCHHHHHHHHhccccCc-----------cC
Q 004336 183 NVVFR-IHEEKIECDRQKFAALSAPFSAMLN--GSFMESLCEDIDLSENNISPSGLRIISDFSVTGS-----------LN 248 (760)
Q Consensus 183 dv~~~-~~~~~~~~hr~~la~~s~yf~amf~--~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~-----------~~ 248 (760)
-|+|. .+|++|.++|. .|..|..++.|+. |++.|+....|.|+ +|+..+|+.|++|.+.-+ -.
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~Iplp--nV~s~iL~kVieyc~~h~~~~~~~~~i~~w~ 94 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 94 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECS--SCCHHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCC--CCCHHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence 47777 57899999999 5889999999997 44567777799998 799999999999997644 23
Q ss_pred CCChhhHHHHHHHHhhhCh
Q 004336 249 GVTPNLLLEILIFANKFCC 267 (760)
Q Consensus 249 ~~~~~~v~~ll~~a~~~~~ 267 (760)
++.+++.+|+.|||+|.+
T Consensus 95 -vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 95 -IAPEIALELLMAANFLDC 112 (112)
T ss_dssp -CCHHHHHHHHHHHHHHTC
T ss_pred -cCHHHHHHHHHHHHHhCc
Confidence 899999999999999874
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=6.9e-05 Score=76.63 Aligned_cols=79 Identities=5% Similarity=-0.032 Sum_probs=73.3
Q ss_pred HHHHHHhCCC--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHH-CCCHHHHHHHHHH
Q 004336 464 IYQMLESDAP--KGVLYFRQSLLLLRL-----NCPEAAMRSLQLARQHAASD-HERLVYEGWILYD-TSHCEEGLRKAEE 534 (760)
Q Consensus 464 ~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~Ai~~l~kal~~~p~~-~~a~~~Lg~i~~~-~g~~eeAl~~~~~ 534 (760)
++++++++|+ ++.+|..+|.+|... |+.++|.++|+++++++|+. ..+++.+|..+.. .|++++|...+++
T Consensus 186 lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 186 LERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4999999999 788999999999995 99999999999999999975 9999999999988 5999999999999
Q ss_pred HHhhcCCh
Q 004336 535 SIQMKRSF 542 (760)
Q Consensus 535 al~l~p~~ 542 (760)
++..+|..
T Consensus 266 AL~a~p~~ 273 (301)
T 3u64_A 266 ALAIDPES 273 (301)
T ss_dssp HHHCCGGG
T ss_pred HHcCCCCC
Confidence 99987763
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.06 E-value=3.2e-05 Score=67.23 Aligned_cols=76 Identities=9% Similarity=0.005 Sum_probs=67.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAF 545 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~-------p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~ 545 (760)
++.-.+.+|..+...|+|..|+.+|++|++.. +....++..+|.+++.+|++++|+..++++++++|++ .+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45677899999999999999999999999863 3567899999999999999999999999999999999 666
Q ss_pred HHHH
Q 004336 546 FLKA 549 (760)
Q Consensus 546 ~~la 549 (760)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6655
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=6.3e-05 Score=82.96 Aligned_cols=96 Identities=13% Similarity=0.044 Sum_probs=74.1
Q ss_pred hcCCHHHHHHHHHHHHhh-----CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 395 LRKEYDEAEHLFEAILTL-----SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l-----~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
..|+|++|+.+|+++|++ .|+++. ....+..+|.+|..+|+|++|+.++ ++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~---~a~~~~nLa~~y~~~g~~~eA~~~~------------------~~aL~ 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVY---MLHMMYQAMGVCLYMQDWEGALKYG------------------QKIIK 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchH---HHHHHHHHHHHHHhhcCHHHHHHHH------------------HHHHH
Confidence 345999999999999975 466652 2467889999999999999999999 55554
Q ss_pred h--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHH
Q 004336 470 S--------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-----AASDHER 511 (760)
Q Consensus 470 ~--------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-----~p~~~~a 511 (760)
. +|+-+..++++|.+|..+|++++|+.+|++|+++ .|+++.+
T Consensus 369 i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 3 2455667788888888888888888888888765 4555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=5.4e-05 Score=83.56 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=79.7
Q ss_pred hcCCHHHHHHHHHHHHhh-----CCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHH
Q 004336 395 LRKEYDEAEHLFEAILTL-----SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 469 (760)
Q Consensus 395 ~~g~~~eA~~~~~~aL~l-----~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~ 469 (760)
.+|+|++|+..+++++.+ .|+++. ....+..+|.+|..+|+|++|+.++ ++++.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~---~~~~~~~L~~~y~~~g~~~eA~~~~------------------~~~L~ 357 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIY---QLKVLDCAMDACINLGLLEEALFYG------------------TRTME 357 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHH---HHHHHHHHHHHHHHHTCHHHHHHHH------------------HHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchH---HHHHHHHHHHHHHhhccHHHHHHHH------------------HHHHH
Confidence 345999999999999975 355542 2467889999999999999999999 55554
Q ss_pred h--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHH---HHHHHHHHHH
Q 004336 470 S--------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-----AASDHE---RLVYEGWILY 520 (760)
Q Consensus 470 ~--------~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~-----~p~~~~---a~~~Lg~i~~ 520 (760)
. +|.-+..++++|.+|..+|++++|+.+|++|+++ .|+++. .+.+|+.+..
T Consensus 358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 3 2555677889999999999999999999999875 455554 3444555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00012 Score=63.62 Aligned_cols=76 Identities=9% Similarity=-0.062 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-------APKGVLYFRQSLLLLRLNCPEAAMR 496 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~Ai~ 496 (760)
.-.+.+|..+...|+|..|+.|+ ++++... +..+.++..+|.++.++|+++.|+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~------------------~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~ 67 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWM------------------EQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHH------------------HHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHH
Confidence 56778999999999999999999 7777643 4568899999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHH
Q 004336 497 SLQLARQHAASDHERLVYEGW 517 (760)
Q Consensus 497 ~l~kal~~~p~~~~a~~~Lg~ 517 (760)
.+++++++.|++..+..+++.
T Consensus 68 ~~~~al~l~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 68 LTKKLLELDPEHQRANGNLKY 88 (104)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHhhHHH
Confidence 999999999999999888763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0012 Score=74.26 Aligned_cols=157 Identities=11% Similarity=0.004 Sum_probs=127.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHhh--cCChHHH
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTS---------HCEEGLRKAEESIQM--KRSFEAF 545 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~~-p~~~~a~~~Lg~i~~~~g---------~~eeAl~~~~~al~l--~p~~~a~ 545 (760)
+...-..+.+.|+.++|++.|+++.+.. +-+...|..+-.++...+ ..++|...|++.... .|+...|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4445567889999999999999998764 234566666666665443 378999999988764 5666888
Q ss_pred HHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhc----cH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cch-HH
Q 004336 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL----RK-GQALNNLGSVYVDCGQLDLAADCYSNALKI--RHT-RA 617 (760)
Q Consensus 546 ~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l----~~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~--~~~-~a 617 (760)
..+...+... +.+++|.+.+.+.. .+ ...|+.+-..|.+.|+.++|.+.|++..+. .|+ ..
T Consensus 109 n~lI~~~~~~-----------g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 109 TNGARLAVAK-----------DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp HHHHHHHHHH-----------TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 8888888888 89999999998773 33 778999999999999999999999999874 455 78
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004336 618 HQGLARVHFLKNNKTTAYEEMTKLIKKA 645 (760)
Q Consensus 618 ~~~La~~~~~~g~~~~A~~~l~~al~~~ 645 (760)
+..+...+.+.|+.++|.+.+++.-+..
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999987654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00034 Score=62.39 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-CCcH--HHHHHHHHHHHcCCHHHHHHHH
Q 004336 662 ELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE---AIAELSRAIAFK-ADLH--LLHLRAAFHEHTGDVLGALRDC 735 (760)
Q Consensus 662 ~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~e---Ai~~l~kal~~~-p~~~--~~~l~a~~~~~~g~~~~A~~~~ 735 (760)
..+...|.+....++....+.+++|+++....+..+ ++..++..+... |... .+++.|..+.++|+|++|++++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455667777888888899999999999999988777 999999988865 4222 4456799999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHhhc
Q 004336 736 RAALSVDPNDQEMLELHSRVYS 757 (760)
Q Consensus 736 ~~aL~l~P~~~~~l~~~~r~~~ 757 (760)
+.+|+.+|+|..+..+...+.+
T Consensus 98 ~~lL~~eP~n~QA~~Lk~~i~~ 119 (126)
T 1nzn_A 98 RGLLQTEPQNNQAKELERLIDK 119 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999988776653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0071 Score=67.95 Aligned_cols=155 Identities=10% Similarity=0.037 Sum_probs=119.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhhC--CCCcchhchHHHHHHHHHHHHHcc---------CHHHHHHHHhhhccccccCCcC
Q 004336 391 CVRLLRKEYDEAEHLFEAILTLS--PDYRMFEGRVAASQLHMLVREHID---------NWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 391 ~~~l~~g~~~eA~~~~~~aL~l~--P~~~~~~~~~~a~~~lg~l~~~~g---------~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
..+.+.|++++|+.+|++..... |+. ..+..+-.++...+ ..+.|..++
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~-------~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf------------- 93 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQ-------YHYNVLLYVCSLAEAATESSPNPGLSRGFDIF------------- 93 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCH-------HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHH-------------
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCH-------hHHHHHHHHHHhCCchhhhhhcchHHHHHHHH-------------
Confidence 34567789999999999988753 443 45554444443333 356677777
Q ss_pred cHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 460 SLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 460 sl~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~-p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
.++.... +-+...|..+-..|.+.|++++|.+.|++..+.. .-+...|..+-..|...|+.++|...|++..+
T Consensus 94 -----~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 94 -----KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp -----HHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666554 3467788889999999999999999999988763 33677888888999999999999999998876
Q ss_pred h--cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 538 M--KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 538 l--~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
. .|+. ..|..+-..|.+.|+.++|.+.+++.-+
T Consensus 169 ~G~~Pd~-----------------------------------------~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 169 SEVVPEE-----------------------------------------PELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp TTCCCCH-----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCH-----------------------------------------HHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 4 3444 6788888889999999999999998876
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0014 Score=58.50 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=74.1
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEA---AMRSLQLARQHA-A-SDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~---Ai~~l~kal~~~-p-~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
|.+.+..++....+.|++|.++.+..+... ++..++..+..+ | ..-+.+++||..+++.|+|++|..+++..+++
T Consensus 24 y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 24 FQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 366777778899999999999999998887 999999988876 5 56789999999999999999999999999999
Q ss_pred cCCh-HHHHHH
Q 004336 539 KRSF-EAFFLK 548 (760)
Q Consensus 539 ~p~~-~a~~~l 548 (760)
.|++ .+....
T Consensus 104 eP~n~QA~~Lk 114 (126)
T 1nzn_A 104 EPQNNQAKELE 114 (126)
T ss_dssp CTTCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 9999 544433
|
| >3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00078 Score=64.90 Aligned_cols=93 Identities=11% Similarity=0.080 Sum_probs=75.4
Q ss_pred EEEEecCeEeehhHHHHhcCCH-HHHhhccCC--CC--CCccceeEecCCCCCHHHHHHHHhccccCccCCCChh-hHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSA-PFSAMLNGS--FM--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~-yf~amf~~~--~~--e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~-~v~~ 257 (760)
|+|-|||..|..-+..|....+ +|..||.++ +. -....++-| +-+|..++.|++|..||+|. ++.+ .+..
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI---DRDP~~F~~ILnyLRtG~L~-lP~~~~~~~ 89 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI---DRDPTYFGPVLNYLRHGKLV-INKDLAEEG 89 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE---CSCSTTHHHHHHHHHHSCCC-CCTTSCHHH
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe---cCChHHHHHHHHHhcCCccC-CCCCCCHHH
Confidence 6789999999999999998754 789999864 21 113456767 57999999999999999997 6544 3478
Q ss_pred HHHHHhhhChHhHHHHHHHHHHh
Q 004336 258 ILIFANKFCCERLKDACDRKLAS 280 (760)
Q Consensus 258 ll~~a~~~~~~~~~~~c~~~l~~ 280 (760)
++.-|..|+++.|++.|...+..
T Consensus 90 l~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 90 VLEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcHHHHHHHHHHHHH
Confidence 99999999999999999988864
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.016 Score=52.39 Aligned_cols=82 Identities=15% Similarity=-0.006 Sum_probs=70.2
Q ss_pred CCChHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCcH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 676 PLRVYPYRYRAAVLMDSHKE---NEAIAELSRAIAFKADLH--LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 676 p~~~~~~~~La~~~~~~g~~---~eAi~~l~kal~~~p~~~--~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
.-...+.+++|+++.+..+. .+++..++..+...|... .+++.|..+.++|+|++|.++.+..|+.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 55678899999999998865 479999999999888654 5557799999999999999999999999999999998
Q ss_pred HHHHhhc
Q 004336 751 LHSRVYS 757 (760)
Q Consensus 751 ~~~r~~~ 757 (760)
+...+.+
T Consensus 116 Lk~~Ie~ 122 (144)
T 1y8m_A 116 LKSMVED 122 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0084 Score=54.67 Aligned_cols=124 Identities=14% Similarity=0.053 Sum_probs=89.6
Q ss_pred HhhcchHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 004336 610 LKIRHTRAHQGLARVHFLKNNK------TTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYR 683 (760)
Q Consensus 610 l~~~~~~a~~~La~~~~~~g~~------~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~ 683 (760)
+.++..+.|..........|+. +.-++.|++++..-|.....+.. .....|.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wr----------------------rYI~LWI 65 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNE----------------------SFARIQV 65 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCH----------------------HHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHH----------------------HHHHHHH
Confidence 3445557888888888888888 77777888888777743211000 1123445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-HHHhh
Q 004336 684 YRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL-HSRVY 756 (760)
Q Consensus 684 ~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~-~~r~~ 756 (760)
..|. +...++.++|.+.|+.++........+|+. |.+-.+.|+..+|.+.+.+++.+.|...++++. +..++
T Consensus 66 rYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 66 RFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp HHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred HHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 5553 356689999999999998887777777755 889999999999999999999999999988874 44444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.014 Score=52.04 Aligned_cols=81 Identities=15% Similarity=-0.007 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCcH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004336 677 LRVYPYRYRAAVLMDSHKE---NEAIAELSRAIAFKADLH--LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 751 (760)
Q Consensus 677 ~~~~~~~~La~~~~~~g~~---~eAi~~l~kal~~~p~~~--~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~ 751 (760)
-.+.+.+++|+++.+..+. .+++..++..+...|... .+++.|..+.++|+|++|.++.+.+|+.+|+|..+..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3567889999999998764 479999999998888543 45577888999999999999999999999999999988
Q ss_pred HHHhhc
Q 004336 752 HSRVYS 757 (760)
Q Consensus 752 ~~r~~~ 757 (760)
...+.+
T Consensus 118 k~~Ie~ 123 (134)
T 3o48_A 118 KSMVED 123 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.053 Score=49.45 Aligned_cols=104 Identities=10% Similarity=0.006 Sum_probs=59.3
Q ss_pred hCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 470 SDAPKGVLYFRQSLLLLRLNCP------EAAMRSLQLARQHAASD--------HERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~------~~Ai~~l~kal~~~p~~--------~~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
..|.+++.|..........|++ ++-++.|++|+..-|.. ...|...+.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3467777777777776666776 66666777776655432 1223333322 3345666666666666
Q ss_pred HhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 536 IQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 536 l~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
+++...+ +.+|...|..-..+|+...|.+.+.+|+...|
T Consensus 87 ~~~hKkF----------------------------------------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 87 RANCKKF----------------------------------------AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCTTB----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhHHH----------------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 5554333 45555556666666666666666666666444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.039 Score=49.87 Aligned_cols=76 Identities=14% Similarity=0.051 Sum_probs=66.6
Q ss_pred CCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHH
Q 004336 472 APKGVLYFRQSLLLLRLNCPE---AAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 546 (760)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~---~Ai~~l~kal~~~p-~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~ 546 (760)
.-.....|++|.++.+..+.+ +++..++..+...| ...+.+++||..+++.|+|++|..+.+..++..|++ .+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 567889999999999987665 79999999999888 467899999999999999999999999999999999 4433
Q ss_pred H
Q 004336 547 L 547 (760)
Q Consensus 547 ~ 547 (760)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.012 Score=54.74 Aligned_cols=59 Identities=14% Similarity=-0.113 Sum_probs=44.6
Q ss_pred HhhhHHHhcCCHHHHHHHHHHHHhhCCCCc---chhchHHHHHHHHHHHHHccCHHHHHHHH
Q 004336 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYR---MFEGRVAASQLHMLVREHIDNWTIADCWL 446 (760)
Q Consensus 388 ~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~---~~~~~~~a~~~lg~l~~~~g~~~~A~~~l 446 (760)
.....++..|.|+.|+.....++....+++ .......++..+|.++...++|..|...+
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y 86 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKY 86 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 334445555699999999998777653333 23344578899999999999999999999
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.014 Score=54.36 Aligned_cols=111 Identities=12% Similarity=-0.054 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHH---HhCCC------cHHHHHHHHHHHHHcCCHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML---ESDAP------KGVLYFRQSLLLLRLNCPEAA 494 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al---~~~p~------~~~~~~~la~~~~~~g~~~~A 494 (760)
.++..-...+...|.|+.|+... ..++ ..+|+ ...+++.+|.+++..++|.+|
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La------------------~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA 82 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLS------------------SLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNA 82 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH------------------HHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHH
Confidence 34455556667888899888776 3333 33343 245788999999999999999
Q ss_pred HHHHHHHHHhC------C-------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHH
Q 004336 495 MRSLQLARQHA------A-------------------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 549 (760)
Q Consensus 495 i~~l~kal~~~------p-------------------~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la 549 (760)
...|+++++.. + .+.+..+.++.+|...|++++|+..++..-...........+|
T Consensus 83 ~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~La 162 (167)
T 3ffl_A 83 VSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLA 162 (167)
T ss_dssp HHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHH
Confidence 99999987541 1 1237889999999999999999999887654444445555555
Q ss_pred HHH
Q 004336 550 YAL 552 (760)
Q Consensus 550 ~~l 552 (760)
..|
T Consensus 163 kLy 165 (167)
T 3ffl_A 163 NLY 165 (167)
T ss_dssp HHC
T ss_pred HHh
Confidence 443
|
| >1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0056 Score=54.62 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=66.5
Q ss_pred eEEEEecCeEeehhHHHHhcCCHHHHhhccCC----CCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChh-hHHH
Q 004336 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGS----FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (760)
Q Consensus 183 dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~----~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~-~v~~ 257 (760)
=|+|-|||..|..-+..|....+ .||... +......++-| +=+|..++.|++|..||+|. ++.+ .+..
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi---DRdp~~F~~ILnflR~G~l~-~p~~~~~~~ 86 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF---DRDPEVFRCVLNFYRTGKLH-YPRYECISA 86 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE---CSCHHHHHHHHHHHHHSCBC-CCTTSCHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE---cCChHHHHHHHHHHhcCCCC-CCCCcCHHH
Confidence 37889999999999999976533 355431 11123456766 56999999999999999996 6554 4789
Q ss_pred HHHHHhhhChHhH-HHHHHHH
Q 004336 258 ILIFANKFCCERL-KDACDRK 277 (760)
Q Consensus 258 ll~~a~~~~~~~~-~~~c~~~ 277 (760)
++.-|..|+++.+ .+.||.-
T Consensus 87 l~~Ea~fy~i~~l~l~~cC~~ 107 (124)
T 1s1g_A 87 YDDELAFYGILPEIIGDCCYE 107 (124)
T ss_dssp HHHHHHHTTCCGGGBCHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHH
Confidence 9999999999987 4676653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.39 Score=56.55 Aligned_cols=97 Identities=15% Similarity=0.016 Sum_probs=65.3
Q ss_pred HhcCCHHHHHH-HHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 394 LLRKEYDEAEH-LFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 394 l~~g~~~eA~~-~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
+..+++++|.. .+ ..-|+. ..+..+...+...|.++.|+...
T Consensus 610 ~~~~~~~~a~~~~l----~~i~~~-------~~~~~~~~~l~~~~~~~~a~~~~-------------------------- 652 (814)
T 3mkq_A 610 TLRGEIEEAIENVL----PNVEGK-------DSLTKIARFLEGQEYYEEALNIS-------------------------- 652 (814)
T ss_dssp HHTTCHHHHHHHTG----GGCCCH-------HHHHHHHHHHHHTTCHHHHHHHC--------------------------
T ss_pred HHhCCHHHHHHHHH----hcCCch-------HHHHHHHHHHHhCCChHHheecC--------------------------
Confidence 34668988865 33 111201 12244555667778888877655
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
.++...+ ......|++++|.+..+ ..++...|..+|..+...|+++.|+..|.++
T Consensus 653 ~~~~~~f---~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 653 PDQDQKF---ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCHHHHH---HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcchhe---ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1222222 34577899999988754 3467789999999999999999999999876
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.047 Score=48.77 Aligned_cols=74 Identities=15% Similarity=0.040 Sum_probs=64.7
Q ss_pred CcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHH
Q 004336 473 PKGVLYFRQSLLLLRLNCP---EAAMRSLQLARQHAAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 546 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~---~~Ai~~l~kal~~~p~-~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~ 546 (760)
-.+.+.|++|.++.+..+. .+++..++..++.+|. ..+.+++||..+++.|+|++|..+.+..+++.|++ .+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3578999999999988765 4799999999998884 57899999999999999999999999999999999 4433
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.78 Score=49.27 Aligned_cols=113 Identities=10% Similarity=-0.065 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----c-ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc---CcHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKI----R-HT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR---NNASA 651 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----~-~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~---~~~~~ 651 (760)
...-..+|..|+..|+|.+|...+.+.++. + +. +++..-.++|...|++.++...|.++..... ..+..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 335568999999999999999999998872 2 22 7788889999999999999999998765431 11111
Q ss_pred --------HHHHH-hcCCHHHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHcCCH
Q 004336 652 --------YEKRS-EYCDRELTRADLEMVTQLDPLR-----VYPYRYRAAVLMDSHKE 695 (760)
Q Consensus 652 --------~~~~~-~~~~~~~A~~~l~kal~l~p~~-----~~~~~~La~~~~~~g~~ 695 (760)
+.... ..+++.+|...|-++....... .....+++.+-.-.++.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 11112 3467777777777765432211 22345555555565553
|
| >1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0035 Score=54.27 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=66.0
Q ss_pred EEEEecCeEeehhHHHHhcCCHHHHhhccCCC----CCCccceeEecCCCCCHHHHHHHHhccccCccCCCChh-hHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSF----MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEI 258 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~yf~amf~~~~----~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~-~v~~l 258 (760)
|+|-|||..|...+..|....+ .||...- ......++-| +=+|..++.|++|..||+|. ++.+ .+..+
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi---DRdp~~F~~ILnflR~g~l~-~p~~~~~~~l 74 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF---DRDPDIFRHILNFYRTGKLH-YPRHECISAY 74 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE---CSCTTTHHHHHHHHHHSCBC-CCTTSCHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE---eCCcHHHHHHHHHHhcCCCC-CCCCcCHHHH
Confidence 7899999999999999987543 3554411 1123456667 56999999999999999996 6544 47889
Q ss_pred HHHHhhhChHhH-HHHHHHH
Q 004336 259 LIFANKFCCERL-KDACDRK 277 (760)
Q Consensus 259 l~~a~~~~~~~~-~~~c~~~ 277 (760)
+.-|..|+++.+ .+.||..
T Consensus 75 ~~Ea~fy~i~~l~~~~cc~~ 94 (105)
T 1nn7_A 75 DEELAFFGLIPEIIGDCCYE 94 (105)
T ss_dssp HHHHHHHTCCSCCBCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 999999999986 4667644
|
| >3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.008 Score=52.84 Aligned_cols=88 Identities=11% Similarity=0.175 Sum_probs=67.7
Q ss_pred EEEEecCeEeehhHHHHhcCCH-HHHhhccCCC-CCCccceeEecCCCCCHHHHHHHHhccccCccCCCChh-hHHHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSA-PFSAMLNGSF-MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEILI 260 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~-yf~amf~~~~-~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~-~v~~ll~ 260 (760)
|+|-|||..|..-+..|....+ .+..||.+.. ......++-| +-+|..++.|++|..||+|. ++.+ .+..++.
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi---DRdp~~F~~ILnylR~G~l~-~p~~~~~~~~~~ 82 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF---DRHPGVFAQIINYYRSGKLH-YPTDVCGPLFEE 82 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE---CSCTTTHHHHHHHHHHSCBC-CCSSSCHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE---ecChHHHHHHHHHhcCCCCC-CCCcccHHHHHH
Confidence 7889999999999999987744 3566776522 1234557777 57999999999999999996 6553 5788999
Q ss_pred HHhhhChHhHH-HHHH
Q 004336 261 FANKFCCERLK-DACD 275 (760)
Q Consensus 261 ~a~~~~~~~~~-~~c~ 275 (760)
-|..|+++... ..||
T Consensus 83 Ea~fy~i~~~~l~~CC 98 (115)
T 3kvt_A 83 ELEFWGLDSNQVEPCC 98 (115)
T ss_dssp HHHHHTCCGGGBCGGG
T ss_pred HHHHhCCChHHHHHHH
Confidence 99999988654 3344
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.59 E-value=1.1 Score=52.65 Aligned_cols=100 Identities=21% Similarity=0.167 Sum_probs=64.2
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcc
Q 004336 484 LLLRLNCPEAAMR-SLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCS 562 (760)
Q Consensus 484 ~~~~~g~~~~Ai~-~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~ 562 (760)
.....+++++|.+ .+. .-|+ ...+..+...+...|.+++|++..+. ....+.++ ..
T Consensus 608 ~~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~~~f~~~---l~-------- 664 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISPD-------QDQKFELA---LK-------- 664 (814)
T ss_dssp HHHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCCC-------HHHHHHHH---HH--------
T ss_pred HHHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCCC-------cchheehh---hh--------
Confidence 3356788888876 431 1110 22235666777888998888765531 11122222 11
Q ss_pred hhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 563 STVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 563 ~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
.+++++|.+.++.. .....|..+|..+.+.++++.|+.+|.++-
T Consensus 665 ---~~~~~~A~~~~~~~-~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 665 ---VGQLTLARDLLTDE-SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp ---HTCHHHHHHHHTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ---cCCHHHHHHHHHhh-CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 26777777776544 235788999999999999999999998863
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.48 E-value=1.6 Score=40.45 Aligned_cols=113 Identities=21% Similarity=0.168 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHH
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 477 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~ 477 (760)
+|+.++-+-.-.+...|++ ..+++..+.-.|.+..++-++ ..-+...+
T Consensus 17 dYdt~~fLsa~L~~~~~eY---------~lL~~I~LyyngEY~R~Lf~L-----------------------~~lNT~Ts 64 (242)
T 3kae_A 17 DYETAIFLAACLLPCKPEY---------RMLMSIVLYLNGEYTRALFHL-----------------------HKLNTCTS 64 (242)
T ss_dssp CHHHHHHHHHHHC----CT---------HHHHHHHHHHTTCHHHHHHHH-----------------------HTCCBHHH
T ss_pred cccHHHHHHHHHccCChHH---------HhhhhhhhhhcchHhHHHHHH-----------------------HhcchHHH
Confidence 7777654433333333433 456788888899999988777 22455777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------CCCcHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 478 YFRQSLLLLRLNCPEAAMRSLQLARQH-----------------AASDHER-LVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 478 ~~~la~~~~~~g~~~~Ai~~l~kal~~-----------------~p~~~~a-~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
.+..+.+|...+++..|+..++..+.- +|.+.+. +..+|.++.+.|+.+||+.++.......
T Consensus 65 ~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 65 KYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 888899999999999999999999832 2344444 4567999999999999999999999998
Q ss_pred CCh
Q 004336 540 RSF 542 (760)
Q Consensus 540 p~~ 542 (760)
|-+
T Consensus 145 ~lf 147 (242)
T 3kae_A 145 FLF 147 (242)
T ss_dssp CCH
T ss_pred ccc
Confidence 877
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.1 Score=60.73 Aligned_cols=113 Identities=14% Similarity=-0.009 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHH--Hc-cCHHHHHHHHhhhccccccCCcCcHHHHHHHHH-----
Q 004336 398 EYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVRE--HI-DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE----- 469 (760)
Q Consensus 398 ~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~--~~-g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~----- 469 (760)
.++.|+..|++....+|... .++..+.+.. .. .+--+|+..+ .+.+.
T Consensus 264 ~~~~a~~~le~L~~~~p~~~-------~~~~~~~i~~~~~~~~~Ev~av~ll------------------~~~l~~~~~~ 318 (754)
T 4gns_B 264 LVDFTIDYLKGLTKKDPIHD-------IYYKTAMITILDHIETKELDMITIL------------------NETLDPLLSL 318 (754)
T ss_dssp GHHHHHHHHHHHHHHCGGGH-------HHHHHHHHHHHTTCGGGHHHHHHHH------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCchh-------HHHHHHHHHHHHHhhhhhHHHHHHH------------------HHHHHHhhhh
Confidence 36789999999999998773 3333333222 11 2223455554 33332
Q ss_pred ---hC----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004336 470 ---SD----------APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 535 (760)
Q Consensus 470 ---~~----------p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~a 535 (760)
.. |....++..++..+...|+++-|+++.++|+...|.+...|+.|+.+|..+|+|+.|+-.++..
T Consensus 319 ~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 319 LNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11 2224466778888999999999999999999999999999999999999999999999877654
|
| >2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0078 Score=54.82 Aligned_cols=87 Identities=11% Similarity=0.103 Sum_probs=66.0
Q ss_pred eEEEEecCeEeehhHHHHhcCCHHHHhhccCCCC----CCccceeEecCCCCCHHHHHHHHhccccCccCCCChh-hHHH
Q 004336 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (760)
Q Consensus 183 dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~----e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~-~v~~ 257 (760)
=|+|-|||..|..-+..|.... ..||...-+ .....++-| +=+|..++.|++|..||+|. ++.+ .+..
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFi---DRdp~~F~~ILnflR~G~l~-~p~~~~~~~ 108 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFF---DRDPEVFRCVLNFYRTGKLH-YPRYECISA 108 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEE---CSCHHHHHHHHHHHHHSSBC-CCTTSCHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEE---eCCcHHHHHHHHHHhcCCcC-CCCCcCHHH
Confidence 4788999999999999998653 345544111 123456777 56999999999999999996 6544 4889
Q ss_pred HHHHHhhhChHhH-HHHHHH
Q 004336 258 ILIFANKFCCERL-KDACDR 276 (760)
Q Consensus 258 ll~~a~~~~~~~~-~~~c~~ 276 (760)
+++-|..|+++.+ +..||.
T Consensus 109 l~eEa~fy~i~~l~l~~CC~ 128 (140)
T 2nz0_B 109 YDDELAFYGILPEIIGDCCY 128 (140)
T ss_dssp HHHHHHHHTCCGGGBCTTTH
T ss_pred HHHHHHHcCCChHHHHHHHH
Confidence 9999999999887 466654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.74 Score=49.44 Aligned_cols=192 Identities=11% Similarity=-0.042 Sum_probs=112.3
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHH--HH-HccCHHHHHHHHhhhccccccCCc
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLV--RE-HIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l--~~-~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
+-.+.+.+|.+|...|++++-.+++.......+..+-.. .+-.....+ +. -.+..+.-....
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak---~~k~v~~l~~~~~~~~~~~~~~~~~~------------ 82 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAK---AAKLVRSLVDMFLDMDAGTGIEVQLC------------ 82 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHH---HHHHHHHHHHHHTTSCCCHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHH---HHHHHHHHHHHHhcCCCcHHHHHHHH------------
Confidence 345678899999999999998888876654443332000 111111111 10 011111111111
Q ss_pred CcHHHHHHHHHhC--CCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHH
Q 004336 459 GSLSVIYQMLESD--APKGV----LYFRQSLLLLRLNCPEAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 459 ~sl~~~~~al~~~--p~~~~----~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~------~~~a~~~Lg~i~~~~g~~e 526 (760)
...++-. ..... +-.++|.+|+..|+|.+|.+.+.+.++.-.. -.+++.....+|...|++.
T Consensus 83 ------~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~ 156 (394)
T 3txn_A 83 ------KDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLP 156 (394)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHH
Confidence 2222211 11111 2337888999999999998888888764211 2356667788888999999
Q ss_pred HHHHHHHHHHhhc----CChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHH-HcCCHHH
Q 004336 527 EGLRKAEESIQMK----RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV-DCGQLDL 601 (760)
Q Consensus 527 eAl~~~~~al~l~----p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~-~~g~~~e 601 (760)
++...+.++.... ++. .-.+.....-|.++. ..++|.+
T Consensus 157 k~k~~l~~a~~~~~ai~~~p-------------------------------------~i~a~i~~~~Gi~~l~~~rdyk~ 199 (394)
T 3txn_A 157 KARAALTSARTTANAIYCPP-------------------------------------KVQGALDLQSGILHAADERDFKT 199 (394)
T ss_dssp HHHHHHHHHHHHHHHSCCCH-------------------------------------HHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHhhhccCCCCH-------------------------------------HHHHHHHHHhhHHHHHhccCHHH
Confidence 9988888876432 111 000445556688889 8999999
Q ss_pred HHHHHHHHHhh----c-ch--HHHHHHHHHHHHcCCH
Q 004336 602 AADCYSNALKI----R-HT--RAHQGLARVHFLKNNK 631 (760)
Q Consensus 602 A~~~~~~Al~~----~-~~--~a~~~La~~~~~~g~~ 631 (760)
|...|-++++. . +. .+...++.+....++.
T Consensus 200 A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 200 AFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 99999988752 1 11 3444455555555553
|
| >1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.027 Score=48.04 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=61.5
Q ss_pred EEEEecCeEeehhHHHHhcCCH-HHHhhccC-CCCCCccceeEecCCCCCHHHHHHHHhcccc-CccCCCChh-hHHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSA-PFSAMLNG-SFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPN-LLLEIL 259 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~-yf~amf~~-~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt-~~~~~~~~~-~v~~ll 259 (760)
|+|-|||..|...+..|...-+ .+..||.+ ........++=| +-+|..++.|++|..| |++. ++.+ .+..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi---DRdp~~F~~ILnflR~~G~l~-~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF---DRNRPSFDAILYFYQSGGRLR-RPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE---CSCSTTHHHHHHHHHTTSCCC-CCTTSCHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE---cCChHHHHHHHHHHhcCCccc-CCCCCCHHHHH
Confidence 7889999999999999975422 22333321 111124557777 5799999999999999 9996 5433 578899
Q ss_pred HHHhhhChHhHH
Q 004336 260 IFANKFCCERLK 271 (760)
Q Consensus 260 ~~a~~~~~~~~~ 271 (760)
.-|..|+++.+.
T Consensus 79 ~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 79 EEIKFYELGENA 90 (100)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHcCCCHHH
Confidence 999999998754
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.93 Score=48.70 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004336 587 NNLGSVYVDCGQLDLAADCYSNALKI 612 (760)
Q Consensus 587 ~~Lg~~y~~~g~~~eA~~~~~~Al~~ 612 (760)
...|......|+.+.|...+++|+..
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L 144 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALRE 144 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 33344445567777777777777774
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=12 Score=42.53 Aligned_cols=217 Identities=12% Similarity=0.032 Sum_probs=129.2
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
...+...+.+++.+.|...+...-...+-... ........++.-....+...++..++ .+
T Consensus 218 ~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~--~~~~~~~~ia~~~~~~~~~~~~~~~~------------------~~ 277 (618)
T 1qsa_A 218 AAVAFASVARQDAENARLMIPSLAQAQQLNED--QIQELRDIVAWRLMGNDVTDEQAKWR------------------DD 277 (618)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHHTSCSTTCCHHHHHHH------------------HH
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhhhccCCCHH--HHHHHHHHHHHHHHHcCCChHHHHHH------------------Hh
Confidence 34455566677889999999887654433320 00112222333333334355666666 55
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHH
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF 546 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~ 546 (760)
.....+++...-...+ ..++.|+++.|...|+++-..........+.+|..+...|+.++|...|+++..- .++ |-
T Consensus 278 ~~~~~~~~~~~e~~~r-~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~-~~f--Yg 353 (618)
T 1qsa_A 278 AIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGF--YP 353 (618)
T ss_dssp HHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSH--HH
T ss_pred ccccCCChHHHHHHHH-HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCh--HH
Confidence 4444444433334444 4457799999999998765544456788999999999999999999999999863 333 22
Q ss_pred HHHHHHHcccCCCCcc---hhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHH
Q 004336 547 LKAYALADSSQDSSCS---STVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLAR 623 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~---~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~ 623 (760)
.++............. ...... +. .......+..+...|....|...+...+...++.-...++.
T Consensus 354 ~lAa~~Lg~~~~~~~~~~~~~~~~~-----------~~-~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~ 421 (618)
T 1qsa_A 354 MVAAQRIGEEYELKIDKAPQNVDSA-----------LT-QGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLAR 421 (618)
T ss_dssp HHHHHHTTCCCCCCCCCCCSCCCCH-----------HH-HSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCCCChhHHhh-----------hc-cChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 2222211111100000 000000 00 11223456677888999999998888876544455567788
Q ss_pred HHHHcCCHHHHHHHHH
Q 004336 624 VHFLKNNKTTAYEEMT 639 (760)
Q Consensus 624 ~~~~~g~~~~A~~~l~ 639 (760)
+....|.++.++....
T Consensus 422 ~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 422 YAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHH
Confidence 8888998888776554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.81 E-value=13 Score=40.47 Aligned_cols=198 Identities=9% Similarity=-0.037 Sum_probs=115.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHH
Q 004336 397 KEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 476 (760)
Q Consensus 397 g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~ 476 (760)
|++++|++.+-.+-+......+......+...+..++...++|+....++.+....... .-..+.++
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q----lk~ai~~~--------- 96 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ----LKLSIQYM--------- 96 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT----SHHHHHHH---------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh----hHHHHHHH---------
Confidence 37888888775554433222222223367777788888999998887766322221000 00001111
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHh----CC-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHH
Q 004336 477 LYFRQSLLLL-RLNCPEAAMRSLQLARQH----AA-------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 544 (760)
Q Consensus 477 ~~~~la~~~~-~~g~~~~Ai~~l~kal~~----~p-------~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a 544 (760)
.+...-|. .....+... ....+.. .. ..+.....|+.++...|++.+|...+.....---..
T Consensus 97 --V~~~~~~l~~~~~~d~~~--~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-- 170 (445)
T 4b4t_P 97 --IQKVMEYLKSSKSLDLNT--RISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-- 170 (445)
T ss_dssp --HHHHHHHHHHHCTTHHHH--HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--
T ss_pred --HHHHHHHHhcCCchhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--
Confidence 11111111 112111111 1112211 11 123455789999999999999999988775311000
Q ss_pred HHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----h-cch----
Q 004336 545 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK----I-RHT---- 615 (760)
Q Consensus 545 ~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~----~-~~~---- 615 (760)
. .. ..+...+.....++...+++.+|...++++.. . .++
T Consensus 171 ----------~-----------~~-----------~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 171 ----------M-----------EM-----------SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp ----------S-----------CH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred ----------c-----------cH-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 0 00 01156777788899999999999999998753 1 222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004336 616 RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 645 (760)
Q Consensus 616 ~a~~~La~~~~~~g~~~~A~~~l~~al~~~ 645 (760)
..+...|.++...++|.+|...|..+....
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 566778999999999999999999887654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.57 E-value=7.4 Score=42.42 Aligned_cols=152 Identities=13% Similarity=0.059 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCc
Q 004336 489 NCPEAAMRSLQLARQH------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSC 561 (760)
Q Consensus 489 g~~~~Ai~~l~kal~~------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~ 561 (760)
|++++|++.+...-+. .+....+...+..++...|+++.....+.-........ .+...+.............
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5567777665433221 23345677777888888888887777665444332222 2221111111100000000
Q ss_pred chhhhhHHHHHHhhhHhh------c--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cch---HHHHHHHHHH
Q 004336 562 SSTVVSLLEDALKCPSDR------L--RKGQALNNLGSVYVDCGQLDLAADCYSNALKI-----RHT---RAHQGLARVH 625 (760)
Q Consensus 562 ~~~~~~~leeAl~~~~~~------l--~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~-----~~~---~a~~~La~~~ 625 (760)
.+ .......+...... + ..+.....|+.+|...|++.+|...+...... +.. +.+....++|
T Consensus 110 ~d--~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LD--LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp TH--HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hh--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 00 00000111111111 1 12667788999999999999999999887652 111 6788889999
Q ss_pred HHcCCHHHHHHHHHHHH
Q 004336 626 FLKNNKTTAYEEMTKLI 642 (760)
Q Consensus 626 ~~~g~~~~A~~~l~~al 642 (760)
...+++..|...++++.
T Consensus 188 l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 99999999999988864
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.23 E-value=4.3 Score=38.14 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTT 633 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~ 633 (760)
...|..+|......|+++-|..+|+++-. +..+..+|...|+.+.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHS------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTC------HHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCC------HHHHHHHHHHhCCHHH
Confidence 46788888888889999999888887633 2234455556666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=1 Score=48.34 Aligned_cols=61 Identities=7% Similarity=-0.101 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 537 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~ 537 (760)
+...++..+...|++.+|+..+++++..+|-+-..+..+-.+++..|+..+|+..|++.-+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456778889999999999999999999999999999999999999999999999988754
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.51 E-value=22 Score=40.34 Aligned_cols=154 Identities=10% Similarity=-0.081 Sum_probs=93.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---cch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcH---HHHHHHHhc
Q 004336 588 NLGSVYVDCGQLDLAADCYSNALKI---RHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA---SAYEKRSEY 658 (760)
Q Consensus 588 ~Lg~~y~~~g~~~eA~~~~~~Al~~---~~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~---~~~~~~~~~ 658 (760)
..+......++.+.|...+....+. ++. .....++.-....+...++...+.+......+.. +........
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHC
Confidence 3445555566888888888776542 222 2333344444444534566666666544333211 111111234
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------C-CcHH
Q 004336 659 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK-----------------------A-DLHL 714 (760)
Q Consensus 659 ~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~-----------------------p-~~~~ 714 (760)
++++.|...|.......+......+.+|.++...|+.++|...|+++.... + ....
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~ 378 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSA 378 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCH
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhh
Confidence 888888888877655444567778889999999999999999888876310 0 0001
Q ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004336 715 -----LHLRAAFHEHTGDVLGALRDCRAALSV 741 (760)
Q Consensus 715 -----~~l~a~~~~~~g~~~~A~~~~~~aL~l 741 (760)
..-++..+...|....|...+..++..
T Consensus 379 ~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 379 LTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 112355666779999999888887754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.49 E-value=1.9 Score=50.13 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKL 641 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~a 641 (760)
...+...+..+...|+|+-|+.+.++|+...|. ..|+.|+.+|..+|+++.|+-.+..+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 346666788888999999999999999998887 99999999999999999999888774
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.37 E-value=1.9 Score=43.29 Aligned_cols=59 Identities=15% Similarity=-0.008 Sum_probs=56.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 484 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.+++.|.+++|++.....++.+|.+++....|-.++.-.|+++.|.+-++.+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45678999999999999999999999999999999999999999999999999999998
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=91.16 E-value=9.4 Score=35.36 Aligned_cols=44 Identities=9% Similarity=-0.066 Sum_probs=31.0
Q ss_pred HHHHHHHcCCCcHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004336 701 ELSRAIAFKADLHLLHLR--AAFHEHTGDVLGALRDCRAALSVDPN 744 (760)
Q Consensus 701 ~l~kal~~~p~~~~~~l~--a~~~~~~g~~~~A~~~~~~aL~l~P~ 744 (760)
..++-...-|....+... +..+..+|-.++....|...-..||.
T Consensus 195 ~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 195 LVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 344445566776665533 66777788888888888888888875
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.20 E-value=1.6 Score=48.40 Aligned_cols=79 Identities=15% Similarity=-0.039 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcc
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 555 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~ 555 (760)
.+..+|.+..-...++.|..+|.+|..+.|++...+..||.+....|+.-+|+-+|-+++.....+ .+..++...+...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 556789999999999999999999999999999999999999999999999999999999876556 7788887776653
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=89.02 E-value=5.1 Score=40.22 Aligned_cols=118 Identities=12% Similarity=-0.025 Sum_probs=80.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p 472 (760)
.+..|+.++|+......++.+|.+. .....+-.++.-.|+|+.|..-+ +...+++|
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da------~~R~~LfqLLcv~G~w~RA~~QL------------------~~~a~l~p 62 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDA------SLRSSFIELLCIDGDFERADEQL------------------MQSIKLFP 62 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCH------HHHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHCG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCH------HHHHHHHHHHHhcCCHHHHHHHH------------------HHHHHhCc
Confidence 4567799999999999999999995 88888999999999999999998 88888888
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLA-RQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~ka-l~~--------~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
.....-..+-.+. .|+ .++.. +.- .|........-+......|+.++|...-.++++..|..
T Consensus 63 ~~~~~a~~yr~lI-------~aE-~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 63 EYLPGASQLRHLV-------KAA-QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp GGHHHHHHHHHHH-------HHH-HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred hhhHHHHHHHHHH-------HHH-HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 7644321111100 011 11111 110 11122233344566677899999999999998876654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.00 E-value=15 Score=34.41 Aligned_cols=55 Identities=9% Similarity=-0.078 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
+++..|.++ .+.|+++.|.+..+.. ++...|..||......|+++-|...|+++-
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 445555554 6789999999987764 568899999999999999999999998763
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.75 E-value=2 Score=47.61 Aligned_cols=80 Identities=6% Similarity=-0.151 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..+..+|.+......++.|..|+ .++....|+++..+..+|.+....|+.-+|+-+|-+++.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y------------------~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYY------------------RHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHH------------------HHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 35677999999999999999999 999999999999999999999999999999999999998
Q ss_pred hCCCcHHHHHHHHHHHHH
Q 004336 504 HAASDHERLVYEGWILYD 521 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~ 521 (760)
.....+.+..++..++..
T Consensus 215 ~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 215 VKFPFPAASTNLQKALSK 232 (497)
T ss_dssp SSBCCHHHHHHHHHHHHH
T ss_pred cCCCChhHHHHHHHHHHH
Confidence 877788899998887754
|
| >2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.59 E-value=0.21 Score=42.94 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHhhhChHhHHHHHHHHHHhhc
Q 004336 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~ 282 (760)
++++|+..++.+|+.|+|+.|++.|..|+..+.
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF 40 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHL 40 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999988765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.46 E-value=6.8 Score=46.88 Aligned_cols=106 Identities=7% Similarity=-0.167 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----hcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHH
Q 004336 509 HERLVYEGWILYDTSHCEEGLRKAEESIQ-----MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 583 (760)
Q Consensus 509 ~~a~~~Lg~i~~~~g~~eeAl~~~~~al~-----l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~ 583 (760)
...+..+-..|.+.|+.++|...|++..+ ..|+ .
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-----------------------------------------v 165 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-----------------------------------------L 165 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-----------------------------------------H
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-----------------------------------------H
Confidence 34677788899999999999999876543 2344 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cch-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcc-CcHHHHHHH
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHT-RAHQGLARVHFLKNN-KTTAYEEMTKLIKKAR-NNASAYEKR 655 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~--~~~-~a~~~La~~~~~~g~-~~~A~~~l~~al~~~~-~~~~~~~~~ 655 (760)
..|+.+-..|.+.|+.++|.+.|++..+. .|+ .++..+...+.+.|+ .++|.+.+++..+..- .+...|...
T Consensus 166 vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~l 242 (1134)
T 3spa_A 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSC
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccc
Confidence 78888888999999999999999998873 455 677778888888887 4788899999887754 444445433
|
| >2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.43 E-value=0.15 Score=43.93 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=40.3
Q ss_pred hhcCCHHhHHHHHHHHHHhCchHHHHHHHHHHHhhCCcccCccchhh
Q 004336 280 SLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVE 326 (760)
Q Consensus 280 ~~~~~~~~al~l~~~a~~~~~~~L~~~a~~~~l~~~p~~l~~~~~~~ 326 (760)
.++ +++||++++.+|..++++.|...|.+|+.++|+.....++|..
T Consensus 6 ~~L-~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~ 51 (105)
T 2eqx_A 6 SGV-QVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLH 51 (105)
T ss_dssp CCC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhh
Confidence 455 7899999999999999999999999999999998777666653
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.31 E-value=3.5 Score=44.81 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=62.7
Q ss_pred hhhHHHHHHhhhHhh-c---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cch-HHHHHHHHHHHHcCCHHHHH
Q 004336 565 VVSLLEDALKCPSDR-L---RKGQALNNLGSVYVDCGQLDLAADCYSNALKI----RHT-RAHQGLARVHFLKNNKTTAY 635 (760)
Q Consensus 565 ~~~~leeAl~~~~~~-l---~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~----~~~-~a~~~La~~~~~~g~~~~A~ 635 (760)
.+..+++.+..+.+. . ....++..+|..|.+.|++++|.++|.++... ++. +.+..+.+++...+++..+.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 445666666555442 1 11567888999999999999999999998873 222 88899999999999999999
Q ss_pred HHHHHHHHhc
Q 004336 636 EEMTKLIKKA 645 (760)
Q Consensus 636 ~~l~~al~~~ 645 (760)
..+.++-...
T Consensus 189 ~~~~ka~~~~ 198 (429)
T 4b4t_R 189 EKLEAVNSMI 198 (429)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999876543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.48 E-value=9.6 Score=45.63 Aligned_cols=80 Identities=5% Similarity=-0.188 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--cCChHHHHHHH
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQH----AASDHERLVYEGWILYDTSHCEEGLRKAEESIQM--KRSFEAFFLKA 549 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~----~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l--~p~~~a~~~la 549 (760)
..+..+-..|.+.|+.++|...|+...+. -.-+...|..+-..|...|+.++|...|++..+. .|+...|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45677888999999999999999775432 2346788999999999999999999999999764 57665555554
Q ss_pred HHHHcc
Q 004336 550 YALADS 555 (760)
Q Consensus 550 ~~l~~~ 555 (760)
..+...
T Consensus 208 ~glcK~ 213 (1134)
T 3spa_A 208 QCMGRQ 213 (1134)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 444443
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.13 E-value=0.82 Score=50.51 Aligned_cols=134 Identities=16% Similarity=0.117 Sum_probs=61.2
Q ss_pred HHHHcCCHHHHHHHHHHHHH-----------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 004336 484 LLLRLNCPEAAMRSLQLARQ-----------HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 552 (760)
Q Consensus 484 ~~~~~g~~~~Ai~~l~kal~-----------~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l 552 (760)
.+...+++++|.++-...+. +++-.+..|++++.++...|+..+..........+.|..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~L---------- 214 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTM---------- 214 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHH----------
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHH----------
Confidence 45567788888777655441 133345678888888888887776654444444332222
Q ss_pred HcccCCCCcchhhhhHHHHHHhhhHhh------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---h----HHHH
Q 004336 553 ADSSQDSSCSSTVVSLLEDALKCPSDR------LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH---T----RAHQ 619 (760)
Q Consensus 553 ~~~~~~~~~~~~~~~~leeAl~~~~~~------l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~---~----~a~~ 619 (760)
+..+..+ ...+..++.+-..|...+.|++|.....++.-+.+ + ..++
T Consensus 215 --------------------l~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~Y 274 (523)
T 4b4t_S 215 --------------------MKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFF 274 (523)
T ss_dssp --------------------HHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHH
T ss_pred --------------------HHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHH
Confidence 0111111 11167788888999999999999999999855422 1 6678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccC
Q 004336 620 GLARVHFLKNNKTTAYEEMTKLIKKARN 647 (760)
Q Consensus 620 ~La~~~~~~g~~~~A~~~l~~al~~~~~ 647 (760)
.+|+++..+++|.+|.+.+..++...|.
T Consensus 275 Y~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 275 YLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 8999999999999999999999988874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 760 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-07 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 5e-06 | |
| d1r29a_ | 122 | d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB | 5e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 6e-05 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-04 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 5e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 5e-04 | |
| d1buoa_ | 121 | d.42.1.1 (A:) Promyelocytic leukaemia zinc finger | 6e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 8e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 9e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.002 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.3 bits (181), Expect = 1e-14
Identities = 45/386 (11%), Positives = 95/386 (24%), Gaps = 37/386 (9%)
Query: 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQL 428
++ + L + + D + H + +P +
Sbjct: 19 ERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78
Query: 429 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 488
+ L+ ++ ++ + +G + S L
Sbjct: 79 ERGQLQEAIEHYRHALRLKPDFIDGYINL------AAALVAAGDMEGAVQAYVSALQYNP 132
Query: 489 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 548
+ L + + + Y I + + A
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192
Query: 549 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCY-- 606
A+ A NLG+V + D A Y
Sbjct: 193 EKAVTLDPNFL------------------------DAYINLGNVLKEARIFDRAVAAYLR 228
Query: 607 SNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR----SEYCDRE 662
+ +L H H LA V++ + A + + I+ + AY E
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
Query: 663 LTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHL-RAAF 721
+L P A + + EA+ +A+ + H A+
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348
Query: 722 HEHTGDVLGALRDCRAALSVDPNDQE 747
+ G + AL + A+ + P +
Sbjct: 349 LQQQGKLQEALMHYKEAIRISPTFAD 374
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (124), Expect = 1e-07
Identities = 43/266 (16%), Positives = 87/266 (32%), Gaps = 32/266 (12%)
Query: 367 CFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAAS 426
L++ ET +A+ LGCV + E A H FE +TL P++
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF---------- 202
Query: 427 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 486
+ N +++DR +++ + L V++ + +
Sbjct: 203 ------LDAYINLGNVLKEARIFDR--------AVAAYLRALSLSPNHAVVHGNLACVYY 248
Query: 487 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF 546
+ A+ + + A + + L + E ++++ +
Sbjct: 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308
Query: 547 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCY 606
LA+ ++ V L AL+ + A +NL SV G+L A Y
Sbjct: 309 ---NNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHY 362
Query: 607 SNALKIR--HTRAHQGLARVHFLKNN 630
A++I A+ + +
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 46.3 bits (108), Expect = 5e-06
Identities = 25/261 (9%), Positives = 61/261 (23%), Gaps = 31/261 (11%)
Query: 354 VAMNLDPRSDKTVCFLERLLESAE-TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTL 412
V + + + + +E++L S TD +R ++ G + A + F L +
Sbjct: 7 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI 66
Query: 413 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 472
PD + + + L ++ ++ +L + +
Sbjct: 67 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD 126
Query: 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ-HAASDHERLVYEGWILYDTSHCEEGLRK 531
+ + L + + + +
Sbjct: 127 -----DLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 181
Query: 532 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS 591
+ + + S + LG
Sbjct: 182 LGNISEQTLMERLKADATDNTSLAEHLS------------------------ETNFYLGK 217
Query: 592 VYVDCGQLDLAADCYSNALKI 612
Y+ G LD A + A+
Sbjct: 218 YYLSLGDLDSATALFKLAVAN 238
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 5e-05
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Query: 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRI 237
+L +VV + E+ + A S F ++ +L I+P G I
Sbjct: 22 RDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLD--PEINPEGFNI 79
Query: 238 ISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLAS 280
+ DF T LN + ++ ++ A E + D C + + +
Sbjct: 80 LLDFMYTSRLN-LREGNIMAVMATAMYLQMEHVVDTCRKFIKA 121
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.6 bits (99), Expect = 6e-05
Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 10/180 (5%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKL 641
Q L G+ + AA CY A+ + A + A + +
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 642 IKKARNNASAYEKRSEYC----DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 697
++ + A+ + + A+L+ L + + + K+
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124
Query: 698 AIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 757
+ R I +++LH R + L +C+ +D + + + +
Sbjct: 125 WNSIEERRIHQESELHSYLTRLIA----AERERELEECQRNHEGHEDDGHIRAQQACIEA 180
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 2e-04
Identities = 16/139 (11%), Positives = 44/139 (31%), Gaps = 16/139 (11%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKL 641
+ N+G +Y + A ++ ++ A+ +++ A +++ +
Sbjct: 37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA 96
Query: 642 IKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701
+ + R N K + Q A + + +A +
Sbjct: 97 LIQLRGNQLIDYK--------------ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 142
Query: 702 LSRAIAFKADLHLLHLRAA 720
L+ A + K++ + A
Sbjct: 143 LALATSMKSEPRHSKIDKA 161
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.4 bits (93), Expect = 5e-04
Identities = 39/331 (11%), Positives = 82/331 (24%), Gaps = 35/331 (10%)
Query: 370 ERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLH 429
+ LE + + A + R + + L IL +PD+
Sbjct: 16 AKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDF------ATLWNCR 69
Query: 430 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 489
V +H++ + L L + L + + + LL RL
Sbjct: 70 REVLQHLETEKSPEESAALVKA--------ELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121
Query: 490 CPEAAMRSLQLAR---QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAF 545
P A AR + H E L + I ++ ++
Sbjct: 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 181
Query: 546 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADC 605
++ L D+ L D +A
Sbjct: 182 HYRSCLLPQLHP-----------QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 230
Query: 606 Y--SNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDR-- 661
Y + + + ++ + +E+ +L + + D
Sbjct: 231 YHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 290
Query: 662 --ELTRADLEMVTQLDPLRVYPYRYRAAVLM 690
+ T + +DP+R + +
Sbjct: 291 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 40.7 bits (93), Expect = 5e-04
Identities = 29/308 (9%), Positives = 67/308 (21%), Gaps = 43/308 (13%)
Query: 347 LYCLLSEVAMNLDPRSDKTVCFLERLLESAETD--RQRLLAFHQLGCVRLLRKEYDEAEH 404
L ++VA+N D+ + LE R++A LG V + E +
Sbjct: 14 FNALRAQVAINDG-NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLA 72
Query: 405 LFEAILTLSP-----------------------DYRMFEGRVAASQLHMLVREHIDNWTI 441
L + ++ + + + +
Sbjct: 73 LMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132
Query: 442 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-------------GVLYFRQSLLLLRL 488
+ + + + L
Sbjct: 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNAR 192
Query: 489 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFL 547
+ L + H+ T + + + +
Sbjct: 193 SQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252
Query: 548 KAYALADSSQDSSCSSTVVSLLEDALKCP---SDRLRKGQALNNLGSVYVDCGQLDLAAD 604
+ +A + +LE+ + + L L +Y G+ A
Sbjct: 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 312
Query: 605 CYSNALKI 612
+ALK+
Sbjct: 313 VLLDALKL 320
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (88), Expect = 6e-04
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRI 237
L +VV + ++ R A S F + + + + + P +
Sbjct: 25 AGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLS-------PKTFQQ 77
Query: 238 ISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASL 281
I +++ T +L L ++L A E L++ C + L ++
Sbjct: 78 ILEYAYTATLQ-AKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 8e-04
Identities = 18/154 (11%), Positives = 37/154 (24%), Gaps = 10/154 (6%)
Query: 565 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLA 622
++ L+ K ++ R N + G + L
Sbjct: 68 QITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLG 127
Query: 623 RVHFLKNNKTTAYEEMTKLIKKARNNA-----SAYEKRSEYCDRELTRADLEMVTQLDPL 677
+ + + + + + + R++ + QL P
Sbjct: 128 IISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQT---SQAESYYRHAAQLVPS 184
Query: 678 RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 711
PY A + I R+IA K
Sbjct: 185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 9e-04
Identities = 19/171 (11%), Positives = 40/171 (23%), Gaps = 11/171 (6%)
Query: 584 QALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIK 643
+ V+ L D Y L A + + K
Sbjct: 21 DSKLGPAEVWTSRQALQ---DLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAK 77
Query: 644 KARNNASAYEKRS-------EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696
N + + + +L V +D + +
Sbjct: 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTS 137
Query: 697 EAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 747
+ S + ++ L+HL + A R A + P++ +
Sbjct: 138 AIVKPQSSSCSYICQHCLVHL-GDIARYRNQTSQAESYYRHAAQLVPSNGQ 187
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 0.002
Identities = 31/295 (10%), Positives = 65/295 (22%), Gaps = 22/295 (7%)
Query: 478 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY---DTSHCEEGLRKAEE 534
F + L L+ A+ + A Q E Y G LR+ E
Sbjct: 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE 81
Query: 535 SIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNN------ 588
++ ++ + + A +G
Sbjct: 82 LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 141
Query: 589 LGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLI------ 642
+ + + + A+++ T + + N + Y++
Sbjct: 142 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 201
Query: 643 --KKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 700
+ E A +L P + ++ EA+
Sbjct: 202 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261
Query: 701 ELSRAIAFK-----ADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750
A+ + + L L A + D D L
Sbjct: 262 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 316
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 0.002
Identities = 30/293 (10%), Positives = 68/293 (23%), Gaps = 29/293 (9%)
Query: 388 QLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHM-------------LVRE 434
+ G RL + A LFEA + P + + +Q L +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 435 HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 494
+ + + + L + + A +
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 495 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 554
L + + + GL F A ++
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203
Query: 555 SSQDSSCSSTVVSL--------LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCY 606
+ + + + ++ NLG ++ G A + +
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263
Query: 607 SNALKIR---HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS 656
AL ++ +G A + + A + + + A + R
Sbjct: 264 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ-----SDAYGAADARD 311
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 760 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.9 | |
| d1r29a_ | 122 | B-cell lymphoma 6 (Bcl6) protein BTB domain {Human | 99.89 | |
| d1buoa_ | 121 | Promyelocytic leukaemia zinc finger (PLZF) protein | 99.88 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.83 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.83 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.82 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.79 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.78 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.77 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.74 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.48 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.46 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.42 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.42 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.38 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.37 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.35 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.32 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.3 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.28 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.27 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.25 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.24 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.24 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.24 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.24 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.21 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.15 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.15 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.15 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.09 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.09 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.09 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.08 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.05 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.01 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.82 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.81 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.77 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.76 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.7 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.61 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.58 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.55 | |
| d2c9wc1 | 96 | Elongin C {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.83 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.67 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.62 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.59 | |
| d1hv2a_ | 99 | Elongin C {Baker's yeast (Saccharomyces cerevisiae | 97.17 | |
| d3kvta_ | 103 | akv3.1 voltage-gated potassium channel {California | 97.06 | |
| d1nn7a_ | 105 | Potassium channel kv4.2 {Rat (Rattus norvegicus) [ | 96.97 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.0 | |
| d1t1da_ | 100 | Shaker potassium channel {California sea hare (Apl | 95.84 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.23 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 93.87 | |
| d1fs1b1 | 55 | Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa | 90.45 | |
| d1nexa1 | 70 | Centromere DNA-binding protein complex Cbf3 subuni | 88.89 | |
| d1nexa2 | 72 | Centromere DNA-binding protein complex Cbf3 subuni | 88.27 | |
| d1fs1b2 | 61 | Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa | 86.68 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 85.92 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-29 Score=272.61 Aligned_cols=333 Identities=15% Similarity=0.114 Sum_probs=296.8
Q ss_pred hhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHH
Q 004336 389 LGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 468 (760)
Q Consensus 389 lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al 468 (760)
+|..++..|+|++|+..|+++++.+|+++ .++..+|.++...|++++|+.++ ++++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~------------------~~al 60 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNT------GVLLLLSSIHFQCRRLDRSAHFS------------------TLAI 60 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHH
Confidence 45556666699999999999999999995 89999999999999999999999 9999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH---------------------------------
Q 004336 469 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE--------------------------------- 515 (760)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~L--------------------------------- 515 (760)
+.+|+++.+++.+|.+|...|++++|+..+.++....|.........
T Consensus 61 ~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (388)
T d1w3ba_ 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HhCCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999888766544433
Q ss_pred -HHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH----HHHHHHH
Q 004336 516 -GWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNL 589 (760)
Q Consensus 516 -g~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~----~~a~~~L 589 (760)
+......+....+...+.+.+...|++ .++..+|..+... +.+++|...+.+.+.. ..++..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~l 209 (388)
T d1w3ba_ 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-----------GEIWLAIHHFEKAVTLDPNFLDAYINL 209 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-----------TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccccccchhhhhHHHHHHhhccCcchhHHHHhhccccccc-----------CcHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 344445666777888888888888888 8888999988888 8888888888887433 7899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHH
Q 004336 590 GSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDREL 663 (760)
Q Consensus 590 g~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~ 663 (760)
|.++...|++++|+..|+++....+. ..+..+|.++...|++++|+..|+++++..|++..++..++ ..|++++
T Consensus 210 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 289 (388)
T d1w3ba_ 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH
T ss_pred hhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999997666 88899999999999999999999999999998887766553 4589999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcC
Q 004336 664 TRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVD 742 (760)
Q Consensus 664 A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~ 742 (760)
|+..++++....|.....+..+|.++...|++++|+..|+++++..|++..++.. |.++...|++++|+..|+++++++
T Consensus 290 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999987754 999999999999999999999999
Q ss_pred CCcHHHHHHHHHhh
Q 004336 743 PNDQEMLELHSRVY 756 (760)
Q Consensus 743 P~~~~~l~~~~r~~ 756 (760)
|++++++..++++-
T Consensus 370 P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 370 PTFADAYSNMGNTL 383 (388)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999887666553
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.8e-27 Score=254.86 Aligned_cols=346 Identities=15% Similarity=0.088 Sum_probs=290.8
Q ss_pred ChhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHH
Q 004336 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 441 (760)
Q Consensus 362 ~~~~~~lle~l~~~a~~~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~ 441 (760)
.+.+...+++..+. .++...+++.+|.+++..|++++|+..|+++++.+|+++ .++..+|.++...|++++
T Consensus 15 ~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 15 FEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA------EAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHhhhhccccc
Confidence 34555555555544 334567889999999999999999999999999999995 899999999999999999
Q ss_pred HHHHHhhhccccccCC----------------cCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004336 442 ADCWLQLYDRWSSVDD----------------IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 505 (760)
Q Consensus 442 A~~~l~l~~~~~~~~d----------------~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~ 505 (760)
|+..+........... ..............+.........+......+....+...+.+.+...
T Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC
Confidence 9998833222111100 001111223333345555566667777778888889999999999999
Q ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--
Q 004336 506 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-- 582 (760)
Q Consensus 506 p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~-- 582 (760)
|++..++..+|..+...|++++|...+++++..+|++ .++..+|.++... +.+++|+..+.+....
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~ 234 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA-----------RIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-----------TCTTHHHHHHHHHHHHCT
T ss_pred cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhcc-----------ccHHHHHHHHHHhHHHhh
Confidence 9999999999999999999999999999999999999 9999999999988 8888888888877332
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH--
Q 004336 583 --GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS-- 656 (760)
Q Consensus 583 --~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~-- 656 (760)
...+..+|.++...|++++|+..|+++++.+|. .++..+|.++...|++++|+..+++++...|.....+..++
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHH
Confidence 788999999999999999999999999998776 89999999999999999999999999999998877665553
Q ss_pred --hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCC
Q 004336 657 --EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGD 727 (760)
Q Consensus 657 --~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~ 727 (760)
..|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++|+++.++.. |.+|..+||
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 45899999999999999999999999999999999999999999999999999999987744 888888886
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.1e-23 Score=219.86 Aligned_cols=265 Identities=9% Similarity=0.014 Sum_probs=193.6
Q ss_pred HHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004336 406 FEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL 485 (760)
Q Consensus 406 ~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~ 485 (760)
|++++...++++... ....+..|..+...|++++|+..+ +++++.+|+++.+|+.+|.++
T Consensus 4 ~~~~~~~~~~n~~~~--~~~~~~~g~~~~~~g~~~~A~~~~------------------~~al~~~P~~~~a~~~lg~~~ 63 (323)
T d1fcha_ 4 YDKGYQFEEENPLRD--HPQPFEEGLRRLQEGDLPNAVLLF------------------EAAVQQDPKHMEAWQYLGTTQ 63 (323)
T ss_dssp HHCCCCCCSSCTTTT--CSSHHHHHHHHHHTTCHHHHHHHH------------------HHHHHSCTTCHHHHHHHHHHH
T ss_pred hHHhHhhcccCCCcc--hHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHH
Confidence 455555555543111 134567899999999999999999 999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchh
Q 004336 486 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSST 564 (760)
Q Consensus 486 ~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~ 564 (760)
...|++++|+..|+++++++|++...+..+|.++...|++++|+..+++++...|.. .............
T Consensus 64 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 134 (323)
T d1fcha_ 64 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA--------- 134 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------------
T ss_pred HHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhc---------
Confidence 999999999999999999999999999999999999999999999999999999876 1110000000000
Q ss_pred hhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 565 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTAYEEMTK 640 (760)
Q Consensus 565 ~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~----~a~~~La~~~~~~g~~~~A~~~l~~ 640 (760)
. ..........+...+.+.+|...|.++++.+|. .++..+|.++...|++++|+..+++
T Consensus 135 ---~--------------~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 197 (323)
T d1fcha_ 135 ---G--------------LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 197 (323)
T ss_dssp -----------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---c--------------cccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccc
Confidence 0 011111122334556778899999999887665 6788899999999999888888887
Q ss_pred HHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Q 004336 641 LIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 641 al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~ 716 (760)
++...|+...++..++ ..|++++|+..|+++++++|+++.++..+|.+|...|++++|+..|++++++.|++....
T Consensus 198 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 277 (323)
T d1fcha_ 198 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 277 (323)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred ccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence 7777776665554443 336667777777777777777777777777777777777777777777777777665444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.4e-22 Score=213.62 Aligned_cols=236 Identities=14% Similarity=0.058 Sum_probs=198.6
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
+..|..++..|++++|+..|+++++.+|++. .++..+|.++...|++++|+..+ .+
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~lg~~~~~~~~~~~A~~~~------------------~~ 78 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM------EAWQYLGTTQAENEQELLAISAL------------------RR 78 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHH------------------Hh
Confidence 3456667777799999999999999999995 99999999999999999999999 99
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH---------------HHHHHHHHCCCHHHHHHH
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV---------------YEGWILYDTSHCEEGLRK 531 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~---------------~Lg~i~~~~g~~eeAl~~ 531 (760)
++..+|++...++.+|.+|...|++++|++.+++++...|....... .....+...+.+.+|+..
T Consensus 79 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 79 CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999887543211 112234455678888888
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 532 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 532 ~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
|++++.++|+. ..+.++..+|.++...|++++|+..|++++.
T Consensus 159 ~~~al~~~p~~--------------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 200 (323)
T d1fcha_ 159 FLAAVRLDPTS--------------------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 200 (323)
T ss_dssp HHHHHHHSTTS--------------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcc--------------------------------------cccccchhhHHHHHHHHHHhhhhcccccccc
Confidence 88888888775 0056788899999999999999999999998
Q ss_pred hcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 004336 612 IRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRY 684 (760)
Q Consensus 612 ~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~~~~~~ 684 (760)
.+|. .++..+|.++...|++++|+..|+++++..|+++.++..++ ..|++++|+..|+++++++|++..++..
T Consensus 201 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 279 (323)
T d1fcha_ 201 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 279 (323)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhh
Confidence 7766 88999999999999999999999999999998887766554 4589999999999999999998765443
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=6.4e-24 Score=191.46 Aligned_cols=101 Identities=21% Similarity=0.351 Sum_probs=95.9
Q ss_pred CCccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHH
Q 004336 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (760)
Q Consensus 177 ~~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~ 256 (760)
.++.+|||+|.|+|++|+|||.|||++|+||++||++++.|+....+.++ +|+|++++.+++|+|||++. ++.++|.
T Consensus 21 ~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~--~v~~~~f~~ll~~~Ytg~~~-i~~~~v~ 97 (122)
T d1r29a_ 21 SRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDP--EINPEGFNILLDFMYTSRLN-LREGNIM 97 (122)
T ss_dssp HTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCT--TSCHHHHHHHHHHHHHSCCC-CCTTTHH
T ss_pred hcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeec--ccCHHHHHHHHhhhcCCeec-CchhhHH
Confidence 46789999999999999999999999999999999999999988777776 89999999999999999997 9999999
Q ss_pred HHHHHHhhhChHhHHHHHHHHHHh
Q 004336 257 EILIFANKFCCERLKDACDRKLAS 280 (760)
Q Consensus 257 ~ll~~a~~~~~~~~~~~c~~~l~~ 280 (760)
++|.+|++|+++.|++.|.+||.+
T Consensus 98 ~ll~~A~~l~i~~L~~~C~~~L~~ 121 (122)
T d1r29a_ 98 AVMATAMYLQMEHVVDTCRKFIKA 121 (122)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCcHHHHHHHHHHHHh
Confidence 999999999999999999999974
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.7e-23 Score=187.83 Aligned_cols=95 Identities=21% Similarity=0.334 Sum_probs=89.5
Q ss_pred CccceeEEEEecCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChhhHHH
Q 004336 178 DQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLE 257 (760)
Q Consensus 178 ~~~~~dv~~~~~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~~v~~ 257 (760)
++.+|||+|.|+|++|+|||.|||++|+||++||.+++ ++|+++ +++|++++.+++|+|||+|. ++.+|+.+
T Consensus 25 ~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~-----~~i~~~--~v~~~~f~~ll~~~Ytg~i~-l~~~~v~~ 96 (121)
T d1buoa_ 25 AGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS-----QHYTLD--FLSPKTFQQILEYAYTATLQ-AKAEDLDD 96 (121)
T ss_dssp HTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCC-----SEEEEC--SSCHHHHHHHHHHHHHSCCC-CCGGGHHH
T ss_pred cCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCcc-----ceeecC--CCCHHHHHHHHHheEccccC-CcHHHHHH
Confidence 67799999999999999999999999999999998754 469997 89999999999999999997 99999999
Q ss_pred HHHHHhhhChHhHHHHHHHHHHh
Q 004336 258 ILIFANKFCCERLKDACDRKLAS 280 (760)
Q Consensus 258 ll~~a~~~~~~~~~~~c~~~l~~ 280 (760)
++.+|++|+++.|++.|++||.+
T Consensus 97 ll~~A~~l~~~~L~~~C~~~L~~ 119 (121)
T d1buoa_ 97 LLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999964
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=3.7e-20 Score=195.34 Aligned_cols=247 Identities=11% Similarity=-0.030 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC-PEAAMRSLQLA 501 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~Ai~~l~ka 501 (760)
.+++..+|.++...+.+++|+..+ .+++.++|++..+|+++|.++...|. +++|+..++++
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~------------------~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~a 104 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLT------------------RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAI 104 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHH------------------HHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 378888899999999999999998 99999999999999999999988774 89999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc
Q 004336 502 RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 581 (760)
Q Consensus 502 l~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~ 581 (760)
++.+|++..+|..+|.++..+|++++|+..++++++++|.+
T Consensus 105 l~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n--------------------------------------- 145 (315)
T d2h6fa1 105 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN--------------------------------------- 145 (315)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---------------------------------------
T ss_pred HHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc---------------------------------------
Confidence 99999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcC
Q 004336 582 KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYC 659 (760)
Q Consensus 582 ~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~ 659 (760)
..+|.++|.++...|++++|+.+|+++++++|. .+|.++|.++...+.+..+ +
T Consensus 146 -~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~------------------------~ 200 (315)
T d2h6fa1 146 -YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR------------------------A 200 (315)
T ss_dssp -HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH------------------------H
T ss_pred -hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh------------------------h
Confidence 788889999999999999999999999998776 7889999888887764221 2
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH---HHHHHHHH--cCCHHHHHHH
Q 004336 660 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH---LRAAFHEH--TGDVLGALRD 734 (760)
Q Consensus 660 ~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~---l~a~~~~~--~g~~~~A~~~ 734 (760)
.+++|+..+.++++++|.+..+|.+++.++...| .+++...+++++++.|+....+ ..+.++.. .++.+.+...
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~ 279 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 279 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3467888899999999999999999998866544 6889999999998888754222 22333322 2443444444
Q ss_pred HHHHH--------hcCCCcHHHHHHH
Q 004336 735 CRAAL--------SVDPNDQEMLELH 752 (760)
Q Consensus 735 ~~~aL--------~l~P~~~~~l~~~ 752 (760)
+++++ +.||-....+..+
T Consensus 280 ~~ka~~l~~~l~~~~DpiR~~yw~~~ 305 (315)
T d2h6fa1 280 LNKALELCEILAKEKDTIRKEYWRYI 305 (315)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44443 3466555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.83 E-value=7.7e-22 Score=209.73 Aligned_cols=248 Identities=8% Similarity=-0.109 Sum_probs=185.4
Q ss_pred HHHHHhCCCcHHHHHHHHHH----------HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHH
Q 004336 465 YQMLESDAPKGVLYFRQSLL----------LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH--CEEGLRKA 532 (760)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~----------~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~--~eeAl~~~ 532 (760)
.+++..+|++..+|..++.+ +...|++++|+..++++++.+|++..++..+|+++...++ +++|+..+
T Consensus 53 ~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~ 132 (334)
T d1dcea1 53 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 132 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHH
Confidence 45555555555444444333 3344557788888888888888888888888887777654 77888888
Q ss_pred HHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 533 EESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQAL-NNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 533 ~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~-~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
++++..+|.+ ..++ ...|.++...+++++|+..++++++
T Consensus 133 ~~al~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~ 172 (334)
T d1dcea1 133 ARFLEADERN----------------------------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (334)
T ss_dssp HHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred HHHHhhCchh----------------------------------------hhhhhhHHHHHHHhccccHHHHHHHHHHHH
Confidence 8888887776 3433 4566777777888888888888887
Q ss_pred hcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 004336 612 IRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVL 689 (760)
Q Consensus 612 ~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~ 689 (760)
.+|. .+++++|.++...|++++|...+++++...|.....+......+..+++...+.+++..+|.....+..+|.++
T Consensus 173 ~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~ 252 (334)
T d1dcea1 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKS 252 (334)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 7665 77788888888888888887777777777776665555555556667788888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 004336 690 MDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 752 (760)
Q Consensus 690 ~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~ 752 (760)
...|++.+|+..+.+++..+|++...+ ..|.++...|++++|+.+|+++++++|+++..+..+
T Consensus 253 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 253 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 888888888888888888888877666 448888888888888888888888888887766533
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=5.8e-19 Score=186.06 Aligned_cols=202 Identities=9% Similarity=0.083 Sum_probs=171.5
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccC-HHHHHHHHhhhccccccCCc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDN-WTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~-~~~A~~~l~l~~~~~~~~d~ 458 (760)
.+-+.++..+|.++...+.+++|+..++++++++|++. .+|..+|.++...|. +++|+.++
T Consensus 40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~------~a~~~r~~~l~~l~~~~~eal~~~------------ 101 (315)
T d2h6fa1 40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY------TVWHFRRVLLKSLQKDLHEEMNYI------------ 101 (315)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCCHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCCh------HHHHHHHHHHHHhCcCHHHHHHHH------------
Confidence 34566777889899999999999999999999999995 999999999998875 89999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
.+++..+|++..+|+.+|.++..+|++++|+..++++++++|++..+|.++|+++...|++++|+..+++++++
T Consensus 102 ------~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 102 ------TAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp ------HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ------HHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhh
Q 004336 539 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ------LDLAADCYSNALKI 612 (760)
Q Consensus 539 ~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~------~~eA~~~~~~Al~~ 612 (760)
+|++ ..+|+++|.++...+. +++|+..+.++++.
T Consensus 176 ~p~n----------------------------------------~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~ 215 (315)
T d2h6fa1 176 DVRN----------------------------------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL 215 (315)
T ss_dssp CTTC----------------------------------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred CCcc----------------------------------------HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh
Confidence 9999 4555555555554443 56777777777776
Q ss_pred cch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 613 RHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 613 ~~~--~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
+|. .++..++.++...| ..++...++++++..|
T Consensus 216 ~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~ 250 (315)
T d2h6fa1 216 VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQP 250 (315)
T ss_dssp STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTT
T ss_pred CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCC
Confidence 665 66777776654433 4566666666666655
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=2.9e-18 Score=173.96 Aligned_cols=211 Identities=16% Similarity=0.047 Sum_probs=166.1
Q ss_pred HHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcC
Q 004336 465 YQMLESD----APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 540 (760)
Q Consensus 465 ~~al~~~----p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p 540 (760)
.+.+... +..+.+++.+|.+|.+.|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|
T Consensus 23 ~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p 102 (259)
T d1xnfa_ 23 EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 102 (259)
T ss_dssp HHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh
Confidence 5666543 456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHH
Q 004336 541 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAH 618 (760)
Q Consensus 541 ~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~ 618 (760)
++ +.++.++|.+|...|++++|+..|+++++.+|. ...
T Consensus 103 ~~----------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 142 (259)
T d1xnfa_ 103 TY----------------------------------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS 142 (259)
T ss_dssp TC----------------------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hh----------------------------------------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHH
Confidence 99 788999999999999999999999999998776 566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHH--HHH-HHh---cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 004336 619 QGLARVHFLKNNKTTAYEEMTKLIKKARNNASA--YEK-RSE---YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDS 692 (760)
Q Consensus 619 ~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~--~~~-~~~---~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~ 692 (760)
..++..+...+..+.+...........+..... ... ... .+..+.+...+.......|....+++++|.++...
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 222 (259)
T d1xnfa_ 143 LWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 222 (259)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHC
Confidence 677777777776665555555444444322111 111 110 12234555555566666777777888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHH
Q 004336 693 HKENEAIAELSRAIAFKADLHLL 715 (760)
Q Consensus 693 g~~~eAi~~l~kal~~~p~~~~~ 715 (760)
|++++|+..|++++..+|++...
T Consensus 223 g~~~~A~~~~~~al~~~p~~~~~ 245 (259)
T d1xnfa_ 223 GDLDSATALFKLAVANNVHNFVE 245 (259)
T ss_dssp TCHHHHHHHHHHHHTTCCTTCHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHH
Confidence 88888888888888888876433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=8.2e-19 Score=185.99 Aligned_cols=251 Identities=10% Similarity=-0.052 Sum_probs=198.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHH----------ccCHHHHHHHHhhhccccccCCcCcHHHHHH
Q 004336 397 KEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREH----------IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 466 (760)
Q Consensus 397 g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~----------~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~ 466 (760)
+..++|+.++++++..+|++. .+|...+.+... .|++++|+.++ ++
T Consensus 43 ~~~~~al~~~~~~l~~~P~~~------~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~------------------~~ 98 (334)
T d1dcea1 43 ELDESVLELTSQILGANPDFA------TLWNCRREVLQHLETEKSPEESAALVKAELGFL------------------ES 98 (334)
T ss_dssp CCSHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH------------------HH
T ss_pred cccHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH------------------HH
Confidence 345899999999999999996 666665555443 44577888888 99
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhhcCChH
Q 004336 467 MLESDAPKGVLYFRQSLLLLRLNC--PEAAMRSLQLARQHAASDHERL-VYEGWILYDTSHCEEGLRKAEESIQMKRSFE 543 (760)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~--~~~Ai~~l~kal~~~p~~~~a~-~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~ 543 (760)
++..+|++..+|+.+|.++...++ +++|+..++++++.+|.+..++ ...|.++...|++++|+..+++++.++|++
T Consensus 99 ~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~- 177 (334)
T d1dcea1 99 CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN- 177 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-
T ss_pred HHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC-
Confidence 999999999999999999888775 8999999999999999998886 467888999999999999999999999999
Q ss_pred HHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHH
Q 004336 544 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLAR 623 (760)
Q Consensus 544 a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~ 623 (760)
..+|+++|.++...|++++|+..++++++..+.. .....
T Consensus 178 ---------------------------------------~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~ 216 (334)
T d1dcea1 178 ---------------------------------------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE--LELVQ 216 (334)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH--HHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH--HHHHH
Confidence 5666667777777777777766666666654442 12233
Q ss_pred HHHHcCCHHHHHHHHHHHHHhccC-------cHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q 004336 624 VHFLKNNKTTAYEEMTKLIKKARN-------NASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKEN 696 (760)
Q Consensus 624 ~~~~~g~~~~A~~~l~~al~~~~~-------~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~ 696 (760)
.+...+..+++...+.+++...|. .+..+... ++..+|+..+.+++..+|.+..++..+|.++...|+++
T Consensus 217 ~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 293 (334)
T d1dcea1 217 NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVL---QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK 293 (334)
T ss_dssp HHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH
T ss_pred HHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHH---hhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHH
Confidence 344556666677777777766663 23333332 56678888888888888888899999999999999999
Q ss_pred HHHHHHHHHHHcCCCcHHHH
Q 004336 697 EAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 697 eAi~~l~kal~~~p~~~~~~ 716 (760)
+|+.+|+++++++|+...++
T Consensus 294 eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 294 ETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp HHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHHCcccHHHH
Confidence 99999999999999887766
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=2.1e-17 Score=167.52 Aligned_cols=205 Identities=15% Similarity=0.059 Sum_probs=165.9
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
..+.+.+++.+|.+|...|++++|+..|++++.++|+++ .+++.+|.++...|++++|+..+
T Consensus 33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~------~a~~~lg~~~~~~g~~~~A~~~~------------ 94 (259)
T d1xnfa_ 33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP------EVFNYLGIYLTQAGNFDAAYEAF------------ 94 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH------HHHhhhchHHHHHHHHHHhhhhh------------
Confidence 566889999999999999999999999999999999996 99999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
++++..+|+++.+++++|.++..+|++++|+..|+++++.+|.+......++..+...+..+.+..........
T Consensus 95 ------~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 95 ------DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp ------HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred ------hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999998888888877777666666665
Q ss_pred cCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhc--cH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 539 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL--RK--GQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 539 ~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l--~~--~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
.+....+... ..+... ....+..+.+...+.... .+ ..+++++|.+|...|++++|+.+|++++..+|
T Consensus 169 ~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 169 DKEQWGWNIV-EFYLGN-------ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp CCCSTHHHHH-HHHTTS-------SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred chhhhhhhHH-HHHHHH-------HHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 5554221111 111111 011234444444443331 12 67888899999999999999999999998777
Q ss_pred h
Q 004336 615 T 615 (760)
Q Consensus 615 ~ 615 (760)
.
T Consensus 241 ~ 241 (259)
T d1xnfa_ 241 H 241 (259)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=9.9e-16 Score=160.21 Aligned_cols=282 Identities=15% Similarity=0.043 Sum_probs=217.5
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+......+.+++..|++++|+..|++++...|++... ....++..+|.++...|++++|+.++
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~-~~~~a~~~lg~~~~~~g~~~~A~~~~--------------- 74 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY-SRIVATSVLGEVLHCKGELTRSLALM--------------- 74 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH-HHHHHHHHHHHHHHHHTCHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcH-HHHHHHHHHHHHHHHCCCHHHHHHHH---------------
Confidence 45556666778888889999999999999999987533 33468889999999999999999999
Q ss_pred HHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHCCCHHH
Q 004336 462 SVIYQMLESDA------PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA--------SDHERLVYEGWILYDTSHCEE 527 (760)
Q Consensus 462 ~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p--------~~~~a~~~Lg~i~~~~g~~ee 527 (760)
++++...+ .....+..++.++...|++..|...+.+++...+ .....+..+|.++...|++++
T Consensus 75 ---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 151 (366)
T d1hz4a_ 75 ---QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 151 (366)
T ss_dssp ---HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhh
Confidence 77766542 2356778899999999999999999999987532 223567789999999999999
Q ss_pred HHHHHHHHHhhcCCh------HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc-H---HHHHHHHHHHHHHcC
Q 004336 528 GLRKAEESIQMKRSF------EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR-K---GQALNNLGSVYVDCG 597 (760)
Q Consensus 528 Al~~~~~al~l~p~~------~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~-~---~~a~~~Lg~~y~~~g 597 (760)
|...+++++...+.. .++...+..+... .........+.++...+..... . ..++..+|.++...|
T Consensus 152 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 152 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR----GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 999999999876543 4555566666555 2222333444444444444321 1 667888999999999
Q ss_pred CHHHHHHHHHHHHhhcch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHH
Q 004336 598 QLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMV 671 (760)
Q Consensus 598 ~~~eA~~~~~~Al~~~~~------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~ka 671 (760)
++++|...++++++..+. ..+.++|.++...|++++|...+++++.....
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------------ 283 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS------------------------ 283 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------------
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh------------------------
Confidence 999999999999885432 56778999999999999999999887755331
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 004336 672 TQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 710 (760)
Q Consensus 672 l~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p 710 (760)
....|....++..+|.+|...|++++|++.+++++.+.+
T Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 122334456788899999999999999999999998654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=2.6e-15 Score=156.92 Aligned_cols=260 Identities=14% Similarity=0.064 Sum_probs=206.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-----
Q 004336 473 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF----- 542 (760)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~-----~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~----- 542 (760)
..++.....|.++...|++++|+..++++++..|++ ..++..+|.++...|++++|+..|++++++.+..
T Consensus 10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 89 (366)
T d1hz4a_ 10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 89 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence 346677788999999999999999999999999876 3578889999999999999999999999875432
Q ss_pred --HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhcc------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 543 --EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR------------KGQALNNLGSVYVDCGQLDLAADCYSN 608 (760)
Q Consensus 543 --~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~------------~~~a~~~Lg~~y~~~g~~~eA~~~~~~ 608 (760)
.++..++..+... +.+..+...+...+. ....+..+|.++...|+++.|...+++
T Consensus 90 ~~~~~~~~~~~~~~~-----------~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~ 158 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQ-----------GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 158 (366)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHH
Confidence 4566677777776 555555555544421 156788899999999999999999999
Q ss_pred HHhhcch-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCc-------HHHHH----HHHhcCCHHHHHHHHHH
Q 004336 609 ALKIRHT-------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN-------ASAYE----KRSEYCDRELTRADLEM 670 (760)
Q Consensus 609 Al~~~~~-------~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~-------~~~~~----~~~~~~~~~~A~~~l~k 670 (760)
++...+. .++...+..+...|++..+...+.++....+.. ..++. .....++.++|...+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 238 (366)
T d1hz4a_ 159 GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 238 (366)
T ss_dssp HHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9984322 677888999999999999999999988876521 11222 12345899999999999
Q ss_pred HHhhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCcHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 004336 671 VTQLDPLRV----YPYRYRAAVLMDSHKENEAIAELSRAIAFK------ADLHLLH-LRAAFHEHTGDVLGALRDCRAAL 739 (760)
Q Consensus 671 al~l~p~~~----~~~~~La~~~~~~g~~~eAi~~l~kal~~~------p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL 739 (760)
++...|.+. ..+.++|.++...|++++|+..+++++... |+....+ ..+.+|...|++++|++.+++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 239 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp SCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 998877653 456789999999999999999999998542 2223333 45899999999999999999999
Q ss_pred hcCC
Q 004336 740 SVDP 743 (760)
Q Consensus 740 ~l~P 743 (760)
++.+
T Consensus 319 ~l~~ 322 (366)
T d1hz4a_ 319 KLAN 322 (366)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=2.8e-13 Score=139.93 Aligned_cols=216 Identities=13% Similarity=0.059 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004336 477 LYFRQSLLLLRLNCPEAAMRSLQLARQHA------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 550 (760)
Q Consensus 477 ~~~~la~~~~~~g~~~~Ai~~l~kal~~~------p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~ 550 (760)
.|...|.+|...|++++|++.|++++++. ++....+.++|.+|..+|++++|+..|++++.+.+..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~-------- 110 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-------- 110 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--------
Confidence 34567899999999999999999999873 2335678999999999999999999999999775444
Q ss_pred HHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcc-----h---HHHHHH
Q 004336 551 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD-CGQLDLAADCYSNALKIRH-----T---RAHQGL 621 (760)
Q Consensus 551 ~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~-~g~~~eA~~~~~~Al~~~~-----~---~a~~~L 621 (760)
+....+ ..++..+|.+|.. .|++++|+.+|++++++.+ . .++.++
T Consensus 111 ----------------~~~~~~----------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~l 164 (290)
T d1qqea_ 111 ----------------GQFRRG----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC 164 (290)
T ss_dssp ----------------TCHHHH----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------ccchhH----------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Confidence 111111 5678889988865 6999999999999998522 1 678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 004336 622 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 701 (760)
Q Consensus 622 a~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~ 701 (760)
|.++...|++++|+..|++++...+....... .....+...+.++...|+++.|...
T Consensus 165 a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~d~~~A~~~ 221 (290)
T d1qqea_ 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQW-----------------------SLKDYFLKKGLCQLAATDAVAAART 221 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG-----------------------GHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHHHHhCccchhhhh-----------------------hHHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999988887764322110 0113355678888999999999999
Q ss_pred HHHHHHcCCCcHHHH---H-H--HHHHHH--cCCHHHHHHHHHHHHhcCCCcHHHH
Q 004336 702 LSRAIAFKADLHLLH---L-R--AAFHEH--TGDVLGALRDCRAALSVDPNDQEML 749 (760)
Q Consensus 702 l~kal~~~p~~~~~~---l-~--a~~~~~--~g~~~~A~~~~~~aL~l~P~~~~~l 749 (760)
+++++..+|...... + . ...+.. .+.+++|+..|.++.+++|-...++
T Consensus 222 ~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L 277 (290)
T d1qqea_ 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (290)
T ss_dssp HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 999999988655321 1 1 223333 2458999999999888877555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=5.6e-13 Score=124.70 Aligned_cols=129 Identities=14% Similarity=0.077 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
..++|..+...|..++..|+|++|+..|+++++++|++. .++..+|.++...|++++|+..+
T Consensus 6 ~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~~A~~~~------------ 67 (159)
T d1a17a_ 6 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA------IYYGNRSLAYLRTECYGYALGDA------------ 67 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhh------hhhhhhHHHHHhccccchHHHHH------------
Confidence 346777788889999999999999999999999999996 99999999999999999999999
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--HCCCHHHHHHH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY--DTSHCEEGLRK 531 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~--~~g~~eeAl~~ 531 (760)
.++++.+|.+..+++.+|.++...|++++|+..|++++.++|++..++..++.+.. ..+.+++|+..
T Consensus 68 ------~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 68 ------TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp ------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999988877754 34445566544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.7e-13 Score=118.49 Aligned_cols=110 Identities=16% Similarity=0.072 Sum_probs=83.9
Q ss_pred HHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHH
Q 004336 386 FHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 465 (760)
Q Consensus 386 ~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~ 465 (760)
+...|..++..|+|++|+..|++++..+|+++ .++..+|.++...|++++|+..+ .
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~------------------~ 61 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNH------VLYSNRSAAYAKKGDYQKAYEDG------------------C 61 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH------------------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch------hhhhcccccccccccccccchhh------------------h
Confidence 44556666666688888888888888888885 77777777777777777777777 7
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004336 466 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL 519 (760)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~ 519 (760)
+++..+|+++.+|+++|.++..+|++++|+..|+++++.+|+++.++..++.+.
T Consensus 62 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 62 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 777777777777777777777777777777777777777777777777776654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.3e-12 Score=124.51 Aligned_cols=134 Identities=15% Similarity=0.150 Sum_probs=120.0
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 461 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl 461 (760)
.+..++..|..+...|+|++|++.|+++ .|.++ .+++.+|.++..+|++++|+.++
T Consensus 4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~------~~~~nlG~~~~~~g~~~~A~~~~--------------- 59 (192)
T d1hh8a_ 4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDPHS------RICFNIGCMYTILKNMTEAEKAF--------------- 59 (192)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCH------HHHHHHHHHHHHTTCHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCH------HHHHHHHHHHHHcCCchhHHHHH---------------
Confidence 4455667788888888999999999864 45554 78999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------HHHHHHHHHHHHHCCCH
Q 004336 462 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----------------HERLVYEGWILYDTSHC 525 (760)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~----------------~~a~~~Lg~i~~~~g~~ 525 (760)
.++++.+|+++.+|+++|.++.++|++++|+..|++++...+.+ .++++++|.++...|++
T Consensus 60 ---~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~ 136 (192)
T d1hh8a_ 60 ---TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 136 (192)
T ss_dssp ---HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred ---HHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999865432 47889999999999999
Q ss_pred HHHHHHHHHHHhhcCCh
Q 004336 526 EEGLRKAEESIQMKRSF 542 (760)
Q Consensus 526 eeAl~~~~~al~l~p~~ 542 (760)
++|++.+++++.+.|+.
T Consensus 137 ~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 137 KKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 99999999999998876
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6.6e-14 Score=156.25 Aligned_cols=224 Identities=10% Similarity=-0.033 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHH
Q 004336 401 EAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 480 (760)
Q Consensus 401 eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~ 480 (760)
+|+++|++|+++.|+.. .++..+|.++...|++++| + ++++..+|+.+..+..
T Consensus 4 eA~q~~~qA~~l~p~~a------~a~~~la~~~~~~~~l~ea---y------------------e~~i~~dp~~a~~~~~ 56 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMT------DSKLGPAEVWTSRQALQDL---Y------------------QKMLVTDLEYALDKKV 56 (497)
T ss_dssp HHHHHHHHHHHHHGGGT------CSSSCSSSSHHHHHHHHHH---H------------------HHHHHHCHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCH------HHHhhHHHHHHHHchHHHH---H------------------HHHHHcChhhHHHHhH
Confidence 57777777777777775 6666677777777777665 5 6677777765555433
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--CcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccC
Q 004336 481 QSLLLLRLNCPEAAMRSLQLARQHAA--SDH-ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 557 (760)
Q Consensus 481 la~~~~~~g~~~~Ai~~l~kal~~~p--~~~-~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~ 557 (760)
.+.+. ...+..+++.+++..+... +.. .....++.+....|.|+.|+..+++++.++|++
T Consensus 57 e~~Lw--~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~--------------- 119 (497)
T d1ya0a1 57 EQDLW--NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC--------------- 119 (497)
T ss_dssp HHHHH--HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------
T ss_pred HHHHH--HHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhh---------------
Confidence 33222 1235566667766665432 211 222334555566677777777777777666666
Q ss_pred CCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHH
Q 004336 558 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEE 637 (760)
Q Consensus 558 ~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~ 637 (760)
...+.++|..+...|++++|...+++++.+++..++.++|.++...|++++|+.+
T Consensus 120 -------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 120 -------------------------RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp ------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHH
Confidence 5667777777777788888888887777777777777788888888888777777
Q ss_pred HHHHHHhccCcHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 004336 638 MTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSH 693 (760)
Q Consensus 638 l~~al~~~~~~~~~~~~~~~----~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g 693 (760)
|+++++..|+++..|..++. .|+..+|+..|.+++..+|..+.++.+|+.++.+..
T Consensus 175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 77777777777766666542 367788999999999999999999999988876544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.1e-12 Score=114.23 Aligned_cols=111 Identities=13% Similarity=-0.087 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
.-+...|..+...|++++|+..+ .+++..+|.++.+|+.+|.+|..+|++++|+..|+++++
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~------------------~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 65 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCY------------------SEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 65 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhcCCcchhhhhcccccccccccccccchhhhhHHH
Confidence 44667899999999999999999 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYAL 552 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l 552 (760)
++|+++.+|+++|.++..+|++++|+..|+++++++|++ .++..++.+.
T Consensus 66 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 66 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999 7777666553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.7e-12 Score=125.57 Aligned_cols=144 Identities=12% Similarity=0.135 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004336 425 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 504 (760)
Q Consensus 425 a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~ 504 (760)
.+...|..+...|+|+.|+..+ .+ ..|.++.+++++|.+|..+|++++|+..|++++++
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~------------------~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l 65 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAF------------------SA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR 65 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------------------HT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHH------------------Hh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 3446799999999999999888 43 35667899999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH
Q 004336 505 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF--EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 582 (760)
Q Consensus 505 ~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~--~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~ 582 (760)
+|+++.+++++|.++..+|++++|+..|++++...|.+ ..+..++..+ .+..
T Consensus 66 dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~--------------------------~~~~ 119 (192)
T d1hh8a_ 66 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF--------------------------KLFA 119 (192)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC--------------------------EEEH
T ss_pred hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhc--------------------------ccch
Confidence 99999999999999999999999999999999877665 0000000000 0122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 583 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 583 ~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
..+++++|.++...|++++|++.|+++++..+.
T Consensus 120 ~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 120 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 678899999999999999999999999987655
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=5.9e-14 Score=156.68 Aligned_cols=208 Identities=8% Similarity=-0.011 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHH
Q 004336 493 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLED 571 (760)
Q Consensus 493 ~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~lee 571 (760)
+|+++|++|+++.|+.++++.++|.++..+|++++| |++++..+|++ .++...+.... ..+..
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~-------------~~y~~ 67 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN-------------HAFKN 67 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHH-------------HHTHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHH-------------HHHHH
Confidence 677888888888888888888888888888888776 77888887766 33322221111 11122
Q ss_pred HHhhhHhhcc------H-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 572 ALKCPSDRLR------K-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLI 642 (760)
Q Consensus 572 Al~~~~~~l~------~-~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~--~a~~~La~~~~~~g~~~~A~~~l~~al 642 (760)
+++.++...+ . ......++.++...+.|+.|+..|++++..++. ..+.++|.++...|++++|...+++++
T Consensus 68 ~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 147 (497)
T d1ya0a1 68 QITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC 147 (497)
T ss_dssp HHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHH
T ss_pred HHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHh
Confidence 2222222210 0 122223456666677788888888888776665 778888999999998888888888777
Q ss_pred HhccCcHHH--HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Q 004336 643 KKARNNASA--YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH 716 (760)
Q Consensus 643 ~~~~~~~~~--~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~ 716 (760)
...+..... +......+++++|+..|++|++++|+++.+|+.+|.++...|++.+|+.+|.+++...|..+.++
T Consensus 148 ~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~ 223 (497)
T d1ya0a1 148 SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Confidence 665521111 11111224555555555555555555555555555555555555555555555555555555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=1.3e-12 Score=134.96 Aligned_cols=210 Identities=11% Similarity=-0.046 Sum_probs=156.6
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..|.+.|.+|...|+|++|+..|++++.+.+..........++..+|.+|...|++++|+..+
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~---------------- 100 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL---------------- 100 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH----------------
Confidence 4456777888999999999999999999885444333334578899999999999999999999
Q ss_pred HHHHHHHhCCCc------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHHHHH
Q 004336 463 VIYQMLESDAPK------GVLYFRQSLLLLR-LNCPEAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCEEGL 529 (760)
Q Consensus 463 ~~~~al~~~p~~------~~~~~~la~~~~~-~g~~~~Ai~~l~kal~~~p~------~~~a~~~Lg~i~~~~g~~eeAl 529 (760)
++++...+.. ..++..+|.++.. .|++++|++.|++++++.+. ...++..+|.++..+|++++|+
T Consensus 101 --~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~ 178 (290)
T d1qqea_ 101 --ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178 (290)
T ss_dssp --HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHH
Confidence 7777655333 5678889988866 69999999999999987432 2456889999999999999999
Q ss_pred HHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 530 RKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSN 608 (760)
Q Consensus 530 ~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~ 608 (760)
..|++++...+.. ... ......+...|.++...|+++.|...+++
T Consensus 179 ~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~l~~~d~~~A~~~~~~ 224 (290)
T d1qqea_ 179 DIYSKLIKSSMGNRLSQ----------------------------------WSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (290)
T ss_dssp HHHHHHHHTTSSCTTTG----------------------------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHHHHhCccchhhh----------------------------------hhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999988766 000 00145677889999999999999999999
Q ss_pred HHhhcch-------HHHHHHHHHHHH--cCCHHHHHHHHHHHHHh
Q 004336 609 ALKIRHT-------RAHQGLARVHFL--KNNKTTAYEEMTKLIKK 644 (760)
Q Consensus 609 Al~~~~~-------~a~~~La~~~~~--~g~~~~A~~~l~~al~~ 644 (760)
+.+.+|. ..+..+..++.. .+.+++|+..|.++.++
T Consensus 225 ~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 9987764 233344444333 23355555555544333
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=2.2e-11 Score=126.49 Aligned_cols=215 Identities=11% Similarity=-0.001 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHhh-cCChHHHHHHHHHHHccc
Q 004336 492 EAAMRSLQLARQHAASDHERLVYEGWILYDT--------------SHCEEGLRKAEESIQM-KRSFEAFFLKAYALADSS 556 (760)
Q Consensus 492 ~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~--------------g~~eeAl~~~~~al~l-~p~~~a~~~la~~l~~~~ 556 (760)
+.+...|++|+...|.+++.|...+..+... +..++|...|+++++. .|..
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~-------------- 98 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-------------- 98 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC--------------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCC--------------
Confidence 4566678888888888888887766654332 3346777777777764 4554
Q ss_pred CCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch---HHHHHHHHHHHHcCCHHH
Q 004336 557 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNKTT 633 (760)
Q Consensus 557 ~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~---~a~~~La~~~~~~g~~~~ 633 (760)
...|...+.++...|++++|...|+++++..|. .++..++......|+++.
T Consensus 99 --------------------------~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (308)
T d2onda1 99 --------------------------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred --------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHH
Confidence 567888899999999999999999999996654 578899999999999999
Q ss_pred HHHHHHHHHHhccCcHHHHHHHH-----hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 004336 634 AYEEMTKLIKKARNNASAYEKRS-----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 708 (760)
Q Consensus 634 A~~~l~~al~~~~~~~~~~~~~~-----~~~~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~ 708 (760)
|...|+++++..|.....+...+ ..++.+.|...|++++..+|.++..|...+..+...|++++|...|++++..
T Consensus 153 ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 153 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 99999999999997665554433 2478899999999999999999999999999999999999999999999998
Q ss_pred CCCcH----HHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 004336 709 KADLH----LLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQ 746 (760)
Q Consensus 709 ~p~~~----~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~ 746 (760)
.|.++ .++.. ..+....|+.+.+...++++.+..|+..
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 77543 34433 5555666999999999999999888764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.1e-11 Score=115.66 Aligned_cols=112 Identities=14% Similarity=0.052 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 423 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 502 (760)
Q Consensus 423 ~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal 502 (760)
...+...|..+.+.|+|++|+.++ .+++..+|+++.+|+++|.++...|++++|+..|++++
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~------------------~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal 71 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFY------------------SQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 71 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHh------------------hhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHH
Confidence 356777899999999999999999 99999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHH
Q 004336 503 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYAL 552 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l 552 (760)
+++|++..++..+|.++..+|++++|+..|++++.++|++ .++..++.+.
T Consensus 72 ~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 72 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 6666665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.35 E-value=2.6e-12 Score=124.07 Aligned_cols=102 Identities=12% Similarity=-0.005 Sum_probs=95.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 553 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~ 553 (760)
++..+...|..++..|++++|+..|+++++++|.++.+|.++|.+|...|++++|+..|+++++++|++
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~----------- 71 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----------- 71 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-----------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc-----------
Confidence 455677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 554 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 554 ~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
..+|+++|.+|..+|++++|+..|+++++++|.
T Consensus 72 -----------------------------~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 72 -----------------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 789999999999999999999999999987664
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.3e-11 Score=114.87 Aligned_cols=129 Identities=16% Similarity=0.074 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcC
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 459 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~ 459 (760)
.+.+..+...|..++.+|+|++|+..|++++...|........ .....
T Consensus 10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~------------------~~~~~-------------- 57 (170)
T d1p5qa1 10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE------------------EAQKA-------------- 57 (170)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH------------------HHHHH--------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH------------------HHhhh--------------
Confidence 4457777888999999999999999999999998877532211 00000
Q ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhc
Q 004336 460 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 460 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~ 539 (760)
. +-...++.++|.+|.++|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++
T Consensus 58 -----~------~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 58 -----Q------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp -----H------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----c------hhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 0 00012344455555555555555555555555555555555555555555555555555555555555
Q ss_pred CCh-HHHHHHHHH
Q 004336 540 RSF-EAFFLKAYA 551 (760)
Q Consensus 540 p~~-~a~~~la~~ 551 (760)
|++ .+...++.+
T Consensus 127 P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 127 PNNKAAKTQLAVC 139 (170)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 555 444444444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=1.4e-12 Score=126.03 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=72.9
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
..+...|..++..|+|++|+..|++++.++|+++ .++..+|.++...|++++|+..+
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~------~~~~~lg~~y~~~~~~~~Ai~~~----------------- 61 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA------VYYTNRALCYLKMQQPEQALADC----------------- 61 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH------HHHHHHHHHHHHTTCHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHhHHHHHhhhhhhhhhhHHH-----------------
Confidence 3455566667777777777777777777777774 67777777777777777777777
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 509 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~ 509 (760)
.+++.++|+++.+|+++|.+|..+|++++|+..|+++++++|++.
T Consensus 62 -~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 62 -RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp -HHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 777777777777777777777777777777777777777665443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=3.3e-10 Score=117.41 Aligned_cols=238 Identities=10% Similarity=-0.062 Sum_probs=187.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHH--------------cCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLR--------------LNCPEAAMRSLQLARQH-AASDHERLVYEGWILYDTSHCEEG 528 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~--------------~g~~~~Ai~~l~kal~~-~p~~~~a~~~Lg~i~~~~g~~eeA 528 (760)
+++++...|.++.+|+..+..+.. .+..++|...|+++++. .|.+...|..++.++...|++++|
T Consensus 39 yerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a 118 (308)
T d2onda1 39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 118 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHH
Confidence 489999999999999998876543 33458899999999975 788899999999999999999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004336 529 LRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSN 608 (760)
Q Consensus 529 l~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~ 608 (760)
...|++++...|.+. ..+|...+......|+++.|...|++
T Consensus 119 ~~i~~~~l~~~~~~~---------------------------------------~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 119 HSIYNRLLAIEDIDP---------------------------------------TLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHTSSSSCT---------------------------------------HHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCh---------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 999999999888650 24567777788888899999999999
Q ss_pred HHhhcch--HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhccCcHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCCh--
Q 004336 609 ALKIRHT--RAHQGLARVHF-LKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRV-- 679 (760)
Q Consensus 609 Al~~~~~--~a~~~La~~~~-~~g~~~~A~~~l~~al~~~~~~~~~~~~~~----~~~~~~~A~~~l~kal~l~p~~~-- 679 (760)
+++..|. ..+...|.... ..|+.+.|...|++++...|.+..++.... ..|+.+.|...|++++...|.++
T Consensus 160 al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~ 239 (308)
T d2onda1 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence 9987665 66777776654 468899999999999999998887766654 45899999999999999877554
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 004336 680 --YPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 751 (760)
Q Consensus 680 --~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~ 751 (760)
..|..........|+.+.+.+.++++.+..|+.........+. .+| +.+.+.|.++.-++.
T Consensus 240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~~~~~~~---~ry--------~~~d~~~~~~~~l~~ 302 (308)
T d2onda1 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLV---DRY--------KFMDLYPCSASELKA 302 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHH---TTT--------CBTTBCSSCHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccccchHHHHH---HHH--------HhcccCcCCHHHHHH
Confidence 3677777777788999999999999999888764332111111 222 455677777766543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.28 E-value=5.6e-10 Score=112.54 Aligned_cols=225 Identities=15% Similarity=0.083 Sum_probs=177.0
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHH----ccCHHHHHHHHhhhccccccCCc
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~----~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
+.+++.+|..++.+|++++|+++|+++.+. ++. .+.+.||.++.. ..++..|..++
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~------~A~~~Lg~~y~~G~~~~~d~~~a~~~~------------ 61 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KEN------SGCFNLGVLYYQGQGVEKNLKKAASFY------------ 61 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCH------HHHHHHHHHHHHTSSSCCCHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCH------HHHHHHHHHHHcCCCcchhHHHHHHhh------------
Confidence 467889999999999999999999999765 453 899999999987 67889999888
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHH
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLR 530 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~ 530 (760)
..+.. +.++.+...+|.++.. .++.+.|...++++....+ ..+...+|..+.. ......|..
T Consensus 62 ------~~a~~--~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~ 131 (265)
T d1ouva_ 62 ------AKACD--LNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVE 131 (265)
T ss_dssp ------HHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ------ccccc--ccccchhhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHH
Confidence 66554 4577888899988876 5788999999999987654 5667777777775 556788888
Q ss_pred HHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccH--HHHHHHHHHHHHH----cCCHHHHH
Q 004336 531 KAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--GQALNNLGSVYVD----CGQLDLAA 603 (760)
Q Consensus 531 ~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~--~~a~~~Lg~~y~~----~g~~~eA~ 603 (760)
.+.+... +.+ .+++.+|..+....... .....+...+..+.+. ..+.+++|.+|.. .+++++|+
T Consensus 132 ~~~~~~~--~~~~~~~~~L~~~~~~~~~~~-------~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~ 202 (265)
T d1ouva_ 132 YFTKACD--LNDGDGCTILGSLYDAGRGTP-------KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEAL 202 (265)
T ss_dssp HHHHHHH--TTCHHHHHHHHHHHHHTSSSC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred Hhhhhhc--ccccchhhhhhhhhccCCCcc-------cccccchhhhhccccccccccccchhhhcccCcccccchhhhh
Confidence 8887664 334 78888998887642222 2333444444444222 7889999999987 67999999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcc
Q 004336 604 DCYSNALKIRHTRAHQGLARVHFL----KNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 604 ~~~~~Al~~~~~~a~~~La~~~~~----~g~~~~A~~~l~~al~~~~ 646 (760)
.+|+++.+.+++.+.++||.+|.. ..++.+|+++|+++.....
T Consensus 203 ~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 203 ARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999986 4488899999999988766
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.27 E-value=1.8e-11 Score=115.44 Aligned_cols=131 Identities=9% Similarity=-0.035 Sum_probs=103.8
Q ss_pred HHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHH
Q 004336 383 LLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 383 A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+..+...|..++..|+|.+|+..|++++...+... +....
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~------------------------~~~~~---------------- 66 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------------AAAED---------------- 66 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------------HHSCH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh------------------------hhhhh----------------
Confidence 33345567777777799999999999987644331 11111
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
......+|....++.++|.++.++|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 67 --~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n 144 (169)
T d1ihga1 67 --ADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 144 (169)
T ss_dssp --HHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred --HHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 233344566778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHHHcc
Q 004336 543 -EAFFLKAYALADS 555 (760)
Q Consensus 543 -~a~~~la~~l~~~ 555 (760)
.+...++.+....
T Consensus 145 ~~~~~~l~~~~~~l 158 (169)
T d1ihga1 145 KAIQAELLKVKQKI 158 (169)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 7777776665443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.25 E-value=6.8e-11 Score=109.50 Aligned_cols=133 Identities=8% Similarity=-0.051 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
..+.|..+...|..++..|+|.+|+..|++++...|........ .....
T Consensus 13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~-------------------~~~~~------------ 61 (153)
T d2fbna1 13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-------------------ILLDK------------ 61 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-------------------HHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhH-------------------HHHHh------------
Confidence 34667778888999999999999999999999987765421111 00000
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 538 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l 538 (760)
...+ ...++.++|.+|.++|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|++++++
T Consensus 62 ------~~~~-----~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 62 ------KKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp ------HHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------hhhH-----HHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1111 12466778888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCh-HHHHHHHHHHH
Q 004336 539 KRSF-EAFFLKAYALA 553 (760)
Q Consensus 539 ~p~~-~a~~~la~~l~ 553 (760)
+|++ .+...+..+..
T Consensus 131 ~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 131 NPNNLDIRNSYELCVN 146 (153)
T ss_dssp STTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8888 66666665543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.24 E-value=2.6e-11 Score=106.06 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcc
Q 004336 476 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 555 (760)
Q Consensus 476 ~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~ 555 (760)
..++.+|..+.+.|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------------- 83 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------------- 83 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc-------------
Confidence 3468899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 556 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 610 (760)
Q Consensus 556 ~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al 610 (760)
..++..+|.+|...|++++|++++++.+
T Consensus 84 ---------------------------~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 84 ---------------------------IAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7788888888888888888888888765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.24 E-value=2.6e-09 Score=107.56 Aligned_cols=174 Identities=13% Similarity=0.066 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQ 499 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~Ai~~l~ 499 (760)
.+++.+|..+.+.+++.+|+.++ +++.+. +++.+.+.+|.+|.. ..++..|..+++
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~------------------~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~ 62 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYF------------------EKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYA 62 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhc
Confidence 67777888888888888888888 776553 567778888888776 667788888887
Q ss_pred HHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhh
Q 004336 500 LARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKC 575 (760)
Q Consensus 500 kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~ 575 (760)
.+... .++.+...+|.++.. .++.++|...++++....+. .+...++..+....... .....+...
T Consensus 63 ~a~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~-~a~~~l~~~~~~~~~~~-------~~~~~a~~~ 132 (265)
T d1ouva_ 63 KACDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA-EGCASLGGIYHDGKVVT-------RDFKKAVEY 132 (265)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCSSSC-------CCHHHHHHH
T ss_pred ccccc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhhh-hHHHhhcccccCCCccc-------chhHHHHHH
Confidence 77654 366777777777664 45677788888777765332 34444444443321111 122233333
Q ss_pred hHhhccH--HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 004336 576 PSDRLRK--GQALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRAHQGLARVHFL 627 (760)
Q Consensus 576 ~~~~l~~--~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~ 627 (760)
+...... ...+..+|..|.. ..+...+..+++.+.+.+...+.+++|.+|..
T Consensus 133 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~ 190 (265)
T d1ouva_ 133 FTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHH 190 (265)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhcccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhccc
Confidence 3332111 4455555655554 34455555555555555555555556655554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.24 E-value=1.4e-10 Score=109.18 Aligned_cols=129 Identities=12% Similarity=0.004 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhc---------hHHHHHHHHHHHHHccCHHHHHHHHhhhc
Q 004336 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEG---------RVAASQLHMLVREHIDNWTIADCWLQLYD 450 (760)
Q Consensus 380 ~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~---------~~~a~~~lg~l~~~~g~~~~A~~~l~l~~ 450 (760)
...+..+...|..++..|+|.+|+..|++++...|....... ....+.++|.++..+|++++|+.++
T Consensus 12 ~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~---- 87 (168)
T d1kt1a1 12 LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECC---- 87 (168)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhh----
Confidence 356677888899999999999999999999987765542211 1133455677777777777777777
Q ss_pred cccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Q 004336 451 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 526 (760)
Q Consensus 451 ~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~e 526 (760)
.+++..+|.+..+++++|.++..+|++++|+..|+++++++|++..++..++.+....+.+.
T Consensus 88 --------------~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 149 (168)
T d1kt1a1 88 --------------DKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHN 149 (168)
T ss_dssp --------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred --------------hhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Confidence 77777777777777777777777777777777777777777777777777666665555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=4.1e-11 Score=107.45 Aligned_cols=107 Identities=12% Similarity=0.161 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHH
Q 004336 475 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALA 553 (760)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~ 553 (760)
+..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|.+ .++..+
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~----- 78 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI----- 78 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHH-----
Confidence 34566899999999999999999999999999999999999999999999999999999999998877 444333
Q ss_pred cccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcch
Q 004336 554 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 615 (760)
Q Consensus 554 ~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~ 615 (760)
+.++..+|.++...+++++|+.+|++++..++.
T Consensus 79 -----------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 79 -----------------------------AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred -----------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 467778899999999999999999999986554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.21 E-value=5.4e-11 Score=103.98 Aligned_cols=95 Identities=11% Similarity=-0.028 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
...+.+|..+.+.|++++|+..+ ++++..+|+++.+|+.+|.++.+.|++++|+..|+++++
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 78 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAF------------------EAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 78 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH------------------hhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccc
Confidence 34567899999999999999999 999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESI 536 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al 536 (760)
++|++..++..+|.+|...|++++|++.+++.+
T Consensus 79 ~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 79 LDPKDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999876
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=2.1e-10 Score=102.69 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=40.6
Q ss_pred HHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHH
Q 004336 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 446 (760)
Q Consensus 382 ~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l 446 (760)
.|..+..+|..++..|+|++|+.+|++++.++|++. .++..+|.++..+|+|++|+..+
T Consensus 3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~ 61 (128)
T d1elra_ 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM------TYITNQAAVYFEKGDYNKCRELC 61 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH------HHHHhHHHHHHHcCchHHHHHHH
Confidence 455566667777777777777777777777777764 66666666666666666666666
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=5.4e-10 Score=105.26 Aligned_cols=111 Identities=6% Similarity=0.035 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..+...|..+...|++++|+..| .+++...|.......... .....
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y------------------~~al~~~~~~~~~~~~~~----------~~~~~------ 59 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQY------------------KKIVSWLEYESSFSNEEA----------QKAQA------ 59 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHTTTCCCCCSHHH----------HHHHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHhhhccccchHHH----------hhhch------
Confidence 55677899999999999999999 899888765432111100 01111
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHH
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 583 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~ 583 (760)
-...++.++|.+|..+|++++|+..+++++.++|++ .
T Consensus 60 ---~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~----------------------------------------~ 96 (170)
T d1p5qa1 60 ---LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----------------------------------------E 96 (170)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------H
T ss_pred ---hHHHHHHHHHHHHHhhhhcccccchhhhhhhccccc----------------------------------------h
Confidence 112467889999999999999999999999999999 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004336 584 QALNNLGSVYVDCGQLDLAADCYSNALK 611 (760)
Q Consensus 584 ~a~~~Lg~~y~~~g~~~eA~~~~~~Al~ 611 (760)
.+++.+|.+|...|++++|+..|+++++
T Consensus 97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 97 KGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6667777777777777777777777665
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.15 E-value=1.4e-10 Score=109.06 Aligned_cols=85 Identities=16% Similarity=0.114 Sum_probs=74.5
Q ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 004336 672 TQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR-AAFHEHTGDVLGALRDCRAALSVDPNDQEMLE 750 (760)
Q Consensus 672 l~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~l~-a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~ 750 (760)
...+|.....+.++|.++.++|++++|+..++++++++|+++..+++ |.++..+|++++|+..|+++++++|+++++..
T Consensus 70 ~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~ 149 (169)
T d1ihga1 70 AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 149 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34556667788899999999999999999999999999999988855 99999999999999999999999999999877
Q ss_pred HHHHhh
Q 004336 751 LHSRVY 756 (760)
Q Consensus 751 ~~~r~~ 756 (760)
.+.++.
T Consensus 150 ~l~~~~ 155 (169)
T d1ihga1 150 ELLKVK 155 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.09 E-value=2.1e-10 Score=105.12 Aligned_cols=105 Identities=10% Similarity=-0.042 Sum_probs=91.9
Q ss_pred HHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHH
Q 004336 433 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL----------NCPEAAMRSLQLAR 502 (760)
Q Consensus 433 ~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~Ai~~l~kal 502 (760)
+.+.+.+++|+..+ ++++..+|+++.+++++|.++... +.+++|+..|++++
T Consensus 7 ~~r~~~fe~A~~~~------------------e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl 68 (145)
T d1zu2a1 7 FDRILLFEQIRQDA------------------ENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL 68 (145)
T ss_dssp HHHHHHHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHH------------------HHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 45677789999999 999999999999999999999854 55689999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcc
Q 004336 503 QHAASDHERLVYEGWILYDTSH-----------CEEGLRKAEESIQMKRSF-EAFFLKAYALADS 555 (760)
Q Consensus 503 ~~~p~~~~a~~~Lg~i~~~~g~-----------~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~ 555 (760)
+++|+++.+++++|.+|..+|+ +++|+..|+++++++|++ .++..++......
T Consensus 69 ~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 69 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988764 799999999999999999 7776776665443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=3.5e-10 Score=100.28 Aligned_cols=108 Identities=10% Similarity=0.014 Sum_probs=94.0
Q ss_pred HHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC
Q 004336 429 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLARQHA 505 (760)
Q Consensus 429 lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~Ai~~l~kal~~~ 505 (760)
++..+...+++++|...| ++++..+|.++.+++++|.++.+.+ ++++|+..|++++..+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y------------------~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~ 66 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKF------------------QSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH------------------HHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS
T ss_pred HHHHhcCHHHHHHHHHHH------------------HHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc
Confidence 455667788999999999 9999999999999999999998755 4557999999999988
Q ss_pred CCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHc
Q 004336 506 ASD--HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALAD 554 (760)
Q Consensus 506 p~~--~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~ 554 (760)
|.. .++++++|.+|...|++++|+.+|+++++++|++ .+...++.+...
T Consensus 67 ~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 765 4689999999999999999999999999999999 777776655443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.5e-10 Score=102.69 Aligned_cols=106 Identities=12% Similarity=0.007 Sum_probs=92.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHc---cCHHHHHHHHhhhccccccCCcCcHHHHHHHH
Q 004336 392 VRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHI---DNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 468 (760)
Q Consensus 392 ~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~---g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al 468 (760)
.++..+++++|++.|++++.++|+++ .+++.+|.++... +++++|+..+ ++++
T Consensus 8 ~~~~~~~l~~Ae~~Y~~aL~~~p~~~------~~~~n~a~~L~~s~~~~d~~~Ai~~l------------------~~~l 63 (122)
T d1nzna_ 8 ELVSVEDLLKFEKKFQSEKAAGSVSK------STQFEYAWCLVRTRYNDDIRKGIVLL------------------EELL 63 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCH------HHHHHHHHHHTTSSSHHHHHHHHHHH------------------HHHT
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcchHHHHHHHHHH------------------HHHH
Confidence 44455599999999999999999996 9999999999764 4556799888 9999
Q ss_pred HhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004336 469 ESDAPK--GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 521 (760)
Q Consensus 469 ~~~p~~--~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~ 521 (760)
..+|.. ..+++++|.+|.+.|++++|+++|+++++++|++..+...++.+...
T Consensus 64 ~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 988765 56899999999999999999999999999999999999888877654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.08 E-value=1.5e-10 Score=106.08 Aligned_cols=111 Identities=11% Similarity=-0.092 Sum_probs=93.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCH----------HHHHHHHhhhccccccCCcCcHH
Q 004336 393 RLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNW----------TIADCWLQLYDRWSSVDDIGSLS 462 (760)
Q Consensus 393 ~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~----------~~A~~~l~l~~~~~~~~d~~sl~ 462 (760)
+-+.+.|++|+..|+++++++|+++ .+++.+|.++...+++ ++|+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~------~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~---------------- 64 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDA------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKF---------------- 64 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH----------------
T ss_pred HHHHccHHHHHHHHHHHHhhCCcch------HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH----------------
Confidence 3344589999999999999999996 9999999998765544 5566666
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Q 004336 463 VIYQMLESDAPKGVLYFRQSLLLLRLNC-----------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEE 527 (760)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~-----------~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~ee 527 (760)
+++++++|+++.+++++|.+|..+|+ +++|++.|+++++++|++..++..|+......+.+.+
T Consensus 65 --~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 65 --EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp --HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred --HHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764 6999999999999999999999998887644433333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.05 E-value=2e-09 Score=99.35 Aligned_cols=116 Identities=6% Similarity=-0.109 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 503 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~ 503 (760)
..+...|..+...|+|.+|+..+ .+++...+..... .+.........+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y------------------~~al~~~~~~~~~-------------~~~~~~~~~~~~- 65 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKY------------------KEALDFFIHTEEW-------------DDQILLDKKKNI- 65 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHTTTTCTTC-------------CCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhhCcchhhh-------------hhHHHHHhhhhH-
Confidence 44566888999999999999999 8888765432110 001111111111
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHcccCCCCcchhhhhHHHHHHhhhHhh
Q 004336 504 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 579 (760)
Q Consensus 504 ~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~ 579 (760)
....+.++|.+|+.+|++++|+..++++++++|++ .+++.+|.++... +....++..++++++.....
T Consensus 66 ----~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~l----g~~~~A~~~~~~al~l~P~n 134 (153)
T d2fbna1 66 ----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF----GFLEEAKENLYKAASLNPNN 134 (153)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHSTTC
T ss_pred ----HHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHc----CCHHHHHHHHHHHHHhCCCC
Confidence 12467899999999999999999999999999999 9999999999998 67778888899988876543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.01 E-value=3e-09 Score=99.71 Aligned_cols=112 Identities=11% Similarity=-0.043 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCC---------------CcHHHHHHHHHHHHHc
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA---------------PKGVLYFRQSLLLLRL 488 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p---------------~~~~~~~~la~~~~~~ 488 (760)
..+...|..+...|+|.+|+..+ .+++...| ....++.++|.+|..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y------------------~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l 77 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQY------------------GKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 77 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHh
Confidence 55677899999999999999998 55554322 2345678899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHH
Q 004336 489 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALA 553 (760)
Q Consensus 489 g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~ 553 (760)
|++++|+..+++++.++|.+..+++++|.++..+|++++|+..|++++.++|++ ++...++.+..
T Consensus 78 ~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 78 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 143 (168)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 55555554443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=7.3e-09 Score=87.11 Aligned_cols=86 Identities=13% Similarity=0.017 Sum_probs=60.3
Q ss_pred HHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHH
Q 004336 384 LAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 463 (760)
Q Consensus 384 ~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~ 463 (760)
...+.+|.+++..|+|++|+.+|++++++.|.+...
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~-------------------------------------------- 41 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-------------------------------------------- 41 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--------------------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc--------------------------------------------
Confidence 445677777777778888888888877776655310
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004336 464 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 520 (760)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~ 520 (760)
.++.+.++.++|.++.+.|++++|+..|+++++++|+++.++.+++.+..
T Consensus 42 -------~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~ 91 (95)
T d1tjca_ 42 -------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (95)
T ss_dssp -------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -------CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 12335566777778888888888888888888888888777777766544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.81 E-value=8.9e-09 Score=95.08 Aligned_cols=105 Identities=10% Similarity=-0.085 Sum_probs=84.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHH
Q 004336 480 RQSLLLLRLNCPEAAMRSLQLARQHAASD------------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 546 (760)
Q Consensus 480 ~la~~~~~~g~~~~Ai~~l~kal~~~p~~------------~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~ 546 (760)
..|..++..|+|++|+..|++++++.|+. ..++.++|.+|..+|++++|+..+++++++.|.. ...
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~- 92 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN- 92 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc-
Confidence 34788999999999999999999987764 3578899999999999999999999999875533 000
Q ss_pred HHHHHHHcccCCCCcchhhhhHHHHHHhhhHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 004336 547 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 614 (760)
Q Consensus 547 ~la~~l~~~~~~~~~~~~~~~~leeAl~~~~~~l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~ 614 (760)
.... .....+++++|.+|...|++++|+..|++++++.+
T Consensus 93 --------------------~~~~---------~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 93 --------------------QDEG---------KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp --------------------STHH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------------------cccc---------chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 0000 00056789999999999999999999999998644
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.8e-08 Score=84.71 Aligned_cols=80 Identities=10% Similarity=0.002 Sum_probs=71.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHH
Q 004336 474 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS-------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAF 545 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~-------~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~ 545 (760)
.++-.+.+|.++.+.|++++|+.+|++|+++.|. ..+++.++|.++...|++++|+..|+++++++|++ .++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 3567889999999999999999999999988543 36889999999999999999999999999999999 888
Q ss_pred HHHHHHHH
Q 004336 546 FLKAYALA 553 (760)
Q Consensus 546 ~~la~~l~ 553 (760)
.+++....
T Consensus 84 ~Nl~~~~~ 91 (95)
T d1tjca_ 84 GNLKYFEY 91 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.76 E-value=1.2e-08 Score=94.13 Aligned_cols=102 Identities=15% Similarity=-0.030 Sum_probs=78.6
Q ss_pred HHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchh------chHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCc
Q 004336 387 HQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFE------GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 460 (760)
Q Consensus 387 ~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~------~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~s 460 (760)
...|..++..|+|++|+..|++++.+.|+.+... ....++..+|.++...|++++|+..+
T Consensus 13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~-------------- 78 (156)
T d2hr2a1 13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSA-------------- 78 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhh--------------
Confidence 3447788888899999999999999998876432 12357889999999999999999999
Q ss_pred HHHHHHHHHhCC-------C----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004336 461 LSVIYQMLESDA-------P----KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 506 (760)
Q Consensus 461 l~~~~~al~~~p-------~----~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p 506 (760)
++++...| . ...+++++|.+|..+|++++|+..|++++++.|
T Consensus 79 ----~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 79 ----DKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp ----HHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----hhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 66665432 1 234667778888888888888888888777644
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.70 E-value=8e-08 Score=90.69 Aligned_cols=128 Identities=10% Similarity=-0.047 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhhhHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCc
Q 004336 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 458 (760)
Q Consensus 379 ~~~~A~a~~~lG~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~ 458 (760)
+..+..++...|......|++++|+..|.+++.+.|+....... .+.|-.
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------------~~~w~~----------------- 56 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------------DFQFVE----------------- 56 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------------TSTTHH-----------------
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc-------------chHHHH-----------------
Confidence 34566777888888889999999999999999999877411000 011100
Q ss_pred CcHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH---
Q 004336 459 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES--- 535 (760)
Q Consensus 459 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~a--- 535 (760)
.......+....++..++.++...|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus 57 ------~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~ 130 (179)
T d2ff4a2 57 ------PFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 130 (179)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 22222334456788999999999999999999999999999999999999999999999999999999998
Q ss_pred ----HhhcCCh
Q 004336 536 ----IQMKRSF 542 (760)
Q Consensus 536 ----l~l~p~~ 542 (760)
+.+.|..
T Consensus 131 L~~eLG~~P~~ 141 (179)
T d2ff4a2 131 LADDLGIDPGP 141 (179)
T ss_dssp HHHHHSCCCCH
T ss_pred HHHHhCCCcCH
Confidence 3456665
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.61 E-value=2.9e-08 Score=99.95 Aligned_cols=69 Identities=13% Similarity=-0.078 Sum_probs=60.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHH
Q 004336 483 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYA 551 (760)
Q Consensus 483 ~~~~~~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~ 551 (760)
.-.++.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++ .++..++.+
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~l 73 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL 73 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 445678999999999999999999999999999999999999999999999999999999 443333333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.58 E-value=3.5e-08 Score=99.32 Aligned_cols=128 Identities=10% Similarity=-0.047 Sum_probs=111.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHh
Q 004336 391 CVRLLRKEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 470 (760)
Q Consensus 391 ~~~l~~g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~ 470 (760)
.-.+..|++++|+..|+++++.+|++. .++..++.++...|++++|+..+ +++++.
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~------~ar~~La~lL~~~G~~e~A~~~l------------------~~a~~l 59 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDA------SLRSSFIELLCIDGDFERADEQL------------------MQSIKL 59 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCH------HHHHHHHHHHHHHTCHHHHHHHH------------------HHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHh
Confidence 345677899999999999999999996 99999999999999999999999 999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh
Q 004336 471 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ-HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 542 (760)
Q Consensus 471 ~p~~~~~~~~la~~~~~~g~~~~Ai~~l~kal~-~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~ 542 (760)
+|++...+..++.++...+..+++...+.+... ..|.....+...+.++...|++++|...++++.+..|..
T Consensus 60 ~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 60 FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred CCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999998887777766655444322 245666778888999999999999999999999998876
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.55 E-value=3.8e-07 Score=85.90 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=66.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHH-------HhcCCCcHHH
Q 004336 677 LRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAA-------LSVDPNDQEM 748 (760)
Q Consensus 677 ~~~~~~~~La~~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~a-------L~l~P~~~~~ 748 (760)
....++..++.++...|++++|+..+++++..+|.+...+ ..+.++...|++.+|++.|+++ +.++|. +++
T Consensus 65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l 143 (179)
T d2ff4a2 65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTL 143 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHH
T ss_pred HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC-HHH
Confidence 3446677888899999999999999999999999988877 4488888889999999998887 557775 577
Q ss_pred HHHHHHhhccCC
Q 004336 749 LELHSRVYSHEP 760 (760)
Q Consensus 749 l~~~~r~~~~~~ 760 (760)
..++.++...+|
T Consensus 144 ~~l~~~il~~~~ 155 (179)
T d2ff4a2 144 RALNERILRQQP 155 (179)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHhCCC
Confidence 788888765544
|
| >d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Elongin C species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=1.1e-05 Score=67.05 Aligned_cols=81 Identities=25% Similarity=0.399 Sum_probs=59.2
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhcc--CCCCCCccceeEecCCCCCHHHHHHHHhccc-----c---CccC--CC
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLN--GSFMESLCEDIDLSENNISPSGLRIISDFSV-----T---GSLN--GV 250 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~--~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~y-----t---~~~~--~~ 250 (760)
|+|+. +|.+|.+.|.+ |-.|.-++.||. +++.|+....|.|+ +|+..+|+.|++|.+ + ..++ .|
T Consensus 3 i~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~~~~~IpL~--nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi 79 (96)
T d2c9wc1 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHC------------CEEECT--TCCHHHHHHHHHHHHHHHHTC----CCCCCCC
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhccCccccCCCCeeECC--CCCHHHHHHHHHHHHhhccCcCCcCCCCCCcC
Confidence 55654 67789998888 899999999994 45677778899998 799999999999995 2 2221 18
Q ss_pred ChhhHHHHHHHHhhhCh
Q 004336 251 TPNLLLEILIFANKFCC 267 (760)
Q Consensus 251 ~~~~v~~ll~~a~~~~~ 267 (760)
+.+.+.+|+.|||.|.|
T Consensus 80 ~~~~l~eLi~AAnyLd~ 96 (96)
T d2c9wc1 80 APEIALELLMAANFLDC 96 (96)
T ss_dssp CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhcC
Confidence 89999999999999986
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.83 E-value=0.0001 Score=64.87 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHcccCCCCcchhhhhHH
Q 004336 490 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLL 569 (760)
Q Consensus 490 ~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~~a~~~la~~l~~~~~~~~~~~~~~~~l 569 (760)
++++|+.+|+++.+.+ ++.+.+.||. ....+.++|+.+++++.+. ++
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~--------------------------- 54 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NS--------------------------- 54 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TC---------------------------
T ss_pred CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cc---------------------------
Confidence 6788999999988764 4556666664 3456788888888887753 33
Q ss_pred HHHHhhhHhhccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcchHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004336 570 EDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRAHQGLARVHFL----KNNKTTAYEEMTKL 641 (760)
Q Consensus 570 eeAl~~~~~~l~~~~a~~~Lg~~y~~----~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~----~g~~~~A~~~l~~a 641 (760)
+.+.+.+|.+|.. ..++++|+.+|+++.+.+++.+.+.||.+|.. ..+..+|..+|+++
T Consensus 55 -------------~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A 121 (133)
T d1klxa_ 55 -------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 121 (133)
T ss_dssp -------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred -------------hhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence 4566667776665 46788888888888888888888888888876 45777777777777
Q ss_pred HHhcc
Q 004336 642 IKKAR 646 (760)
Q Consensus 642 l~~~~ 646 (760)
.+...
T Consensus 122 a~~G~ 126 (133)
T d1klxa_ 122 CRLGS 126 (133)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 66543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.67 E-value=0.00034 Score=61.35 Aligned_cols=111 Identities=12% Similarity=0.011 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhchHHHHHHHHHHHHHccCHHHHHHHHhhhccccccCCcCcHHHHHHHHHhCCCcHH
Q 004336 397 KEYDEAEHLFEAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 476 (760)
Q Consensus 397 g~~~eA~~~~~~aL~l~P~~~~~~~~~~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d~~sl~~~~~al~~~p~~~~ 476 (760)
.|+++|+.+|+++.+.. ++ .+.+.++. ....+.++|..++ +++.+ .+++.
T Consensus 7 kd~~~A~~~~~kaa~~g--~~------~a~~~l~~--~~~~~~~~a~~~~------------------~~aa~--~g~~~ 56 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EM------FGCLSLVS--NSQINKQKLFQYL------------------SKACE--LNSGN 56 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CT------THHHHHHT--CTTSCHHHHHHHH------------------HHHHH--TTCHH
T ss_pred cCHHHHHHHHHHHHHCC--Ch------hhhhhhcc--ccccCHHHHHHHH------------------hhhhc--ccchh
Confidence 48899999999998764 32 45555654 3456888999999 77765 46889
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhc
Q 004336 477 LYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMK 539 (760)
Q Consensus 477 ~~~~la~~~~~----~g~~~~Ai~~l~kal~~~p~~~~a~~~Lg~i~~~----~g~~eeAl~~~~~al~l~ 539 (760)
+.+.+|.+|.. ..++++|+++|+++.+. .++.+.+.||.+|.. ..++++|+.+|+++.+..
T Consensus 57 a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 57 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 99999999987 56899999999999875 578899999999987 568999999999998764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.62 E-value=0.00017 Score=61.92 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=64.4
Q ss_pred cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHH
Q 004336 474 KGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDH-ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 546 (760)
Q Consensus 474 ~~~~~~~la~~~~~~g~---~~~Ai~~l~kal~~~p~~~-~a~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~ 546 (760)
.....|+.|.++.+..+ .++|+..++.+++.+|.+. +.+++||..|+..|+|++|..+++++++++|++ .+..
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 36789999999987654 4689999999999998765 899999999999999999999999999999999 4433
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.59 E-value=0.00021 Score=61.27 Aligned_cols=79 Identities=16% Similarity=0.022 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 004336 679 VYPYRYRAAVLMDSH---KENEAIAELSRAIAFKADLH--LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHS 753 (760)
Q Consensus 679 ~~~~~~La~~~~~~g---~~~eAi~~l~kal~~~p~~~--~~~l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~ 753 (760)
..+.++.|+++.+.. +.++|+..++.++...|... .++..|..|.++|+|++|.++++++|+++|+|..++.+..
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 678899999999775 45789999999999888764 4446688888899999999999999999999999998877
Q ss_pred Hhhc
Q 004336 754 RVYS 757 (760)
Q Consensus 754 r~~~ 757 (760)
.+.+
T Consensus 115 ~Ie~ 118 (124)
T d2pqrb1 115 MVED 118 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Elongin C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.17 E-value=0.00063 Score=56.32 Aligned_cols=79 Identities=23% Similarity=0.377 Sum_probs=64.7
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccc--------c---C---ccC
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV--------T---G---SLN 248 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~y--------t---~---~~~ 248 (760)
|+|.- +|.+|.+.|.+ |-.|.-++.|+.+++.|+. ..|.|+ +|+..+|+.|++|.+ + + .-.
T Consensus 6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~e~~-~~Ipl~--~V~s~iL~kViey~~~h~~~~~~~~~~~~~~efd 81 (99)
T d1hv2a_ 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESK-GRIELK--QFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFE 81 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCT-TEEEET--TSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCC
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHHccCCCCc-CccccC--CCChHHHHHHHHHHHHhhhCcCcccccccCCCCC
Confidence 67775 56789998888 7799999999987776664 579998 799999999999985 1 1 233
Q ss_pred CCChhhHHHHHHHHhhhCh
Q 004336 249 GVTPNLLLEILIFANKFCC 267 (760)
Q Consensus 249 ~~~~~~v~~ll~~a~~~~~ 267 (760)
++.+.+.+|+.|||.+.+
T Consensus 82 -vd~~~l~eLi~AAnyLdI 99 (99)
T d1hv2a_ 82 -IPTEMSLELLLAADYLSI 99 (99)
T ss_dssp -CCHHHHHHHHHHHHHHCC
T ss_pred -CCHHHHHHHHHHHhhhCC
Confidence 788889999999998864
|
| >d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: akv3.1 voltage-gated potassium channel species: California sea hare (Aplysia californica) [TaxId: 6500]
Probab=97.06 E-value=0.00013 Score=61.10 Aligned_cols=88 Identities=11% Similarity=0.162 Sum_probs=68.2
Q ss_pred EEEEecCeEeehhHHHHhcCCH-HHHhhccCCCC-CCccceeEecCCCCCHHHHHHHHhccccCccCCCChh-hHHHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSA-PFSAMLNGSFM-ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEILI 260 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~-yf~amf~~~~~-e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~-~v~~ll~ 260 (760)
|+|-|||..|...+..|....+ +|..|+.+... .+...++-| +=+|..++.|++|..||++. ++++ .+..++.
T Consensus 4 I~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylR~g~l~-~p~~~~~~~l~~ 79 (103)
T d3kvta_ 4 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF---DRHPGVFAQIINYYRSGKLH-YPTDVCGPLFEE 79 (103)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE---CSCTTTHHHHHHHHHHSCBC-CCSSSCHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEe---cCCHHHHHHHHHHHccCCcc-cccccCHHHHHH
Confidence 7889999999999999998765 55555554332 234457777 57999999999999999997 6544 5677888
Q ss_pred HHhhhChH-hHHHHHH
Q 004336 261 FANKFCCE-RLKDACD 275 (760)
Q Consensus 261 ~a~~~~~~-~~~~~c~ 275 (760)
-|..|+++ .+.+.||
T Consensus 80 Ea~yygi~~~~l~~Cc 95 (103)
T d3kvta_ 80 ELEFWGLDSNQVEPCC 95 (103)
T ss_dssp HHHHHTCCGGGBCGGG
T ss_pred HHHHcCCCHHHHHHHh
Confidence 89999996 4677775
|
| >d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Potassium channel kv4.2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.97 E-value=0.00012 Score=61.46 Aligned_cols=89 Identities=12% Similarity=0.101 Sum_probs=68.0
Q ss_pred EEEEecCeEeehhHHHHhcCCH-HHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccccCccCCCChh-hHHHHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAALSA-PFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEILIF 261 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~s~-yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~~~~~~~~~-~v~~ll~~ 261 (760)
|+|-|||..|...+..|..... .|..|+...+......++-| +=+|..++.|++|..||++. ++++ .+..++.-
T Consensus 2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~Fi---DRdp~~F~~IL~ylR~G~l~-~p~~~~~~~l~~E 77 (105)
T d1nn7a_ 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFF---DRDPDIFRHILNFYRTGKLH-YPRHECISAYDEE 77 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEE---CSCTTTHHHHHHHHHHSCBC-CCTTSCHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCCCCccccccccCcCCCCCcEEE---eCCHHHHHHHHHHHhcCccc-cCCCccHHHHHHH
Confidence 7899999999999999987654 34455555555556667877 56999999999999999997 5444 46788888
Q ss_pred HhhhChHhH-HHHHHH
Q 004336 262 ANKFCCERL-KDACDR 276 (760)
Q Consensus 262 a~~~~~~~~-~~~c~~ 276 (760)
|..|+++.+ .+.||.
T Consensus 78 a~fygi~~~~l~~cc~ 93 (105)
T d1nn7a_ 78 LAFFGLIPEIIGDCCY 93 (105)
T ss_dssp HHHHTCCSCCBCHHHH
T ss_pred HHHcCCCHHHHHHHHH
Confidence 999999753 344443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=1.1 Score=46.33 Aligned_cols=118 Identities=11% Similarity=-0.015 Sum_probs=58.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhc---ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHH---HHHHHhcC
Q 004336 589 LGSVYVDCGQLDLAADCYSNALKIR---HT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASA---YEKRSEYC 659 (760)
Q Consensus 589 Lg~~y~~~g~~~eA~~~~~~Al~~~---~~---~a~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~---~~~~~~~~ 659 (760)
.+.......+.+.|...+....... +. .....++......+..+.|............+.... .......+
T Consensus 220 ~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~ 299 (450)
T d1qsaa1 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTG 299 (450)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcC
Confidence 3444444556666666666544321 11 122222333333455556666555544443322111 11111235
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004336 660 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 706 (760)
Q Consensus 660 ~~~~A~~~l~kal~l~p~~~~~~~~La~~~~~~g~~~eAi~~l~kal 706 (760)
+...+...+..........+...+.+|..+...|+.++|...|..+.
T Consensus 300 ~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 56665555554332222334556777777777777777777777665
|
| >d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Shaker potassium channel species: California sea hare (Aplysia californica) [TaxId: 6500]
Probab=95.84 E-value=0.003 Score=52.00 Aligned_cols=82 Identities=11% Similarity=0.089 Sum_probs=63.2
Q ss_pred EEEEecCeEeehhHHHHhcC-CHHHHhhccCC-CCCCccceeEecCCCCCHHHHHHHHhccccC-ccCCCCh-hhHHHHH
Q 004336 184 VVFRIHEEKIECDRQKFAAL-SAPFSAMLNGS-FMESLCEDIDLSENNISPSGLRIISDFSVTG-SLNGVTP-NLLLEIL 259 (760)
Q Consensus 184 v~~~~~~~~~~~hr~~la~~-s~yf~amf~~~-~~e~~~~~v~~~~~~i~~~~~~~~~~~~yt~-~~~~~~~-~~v~~ll 259 (760)
|+|-|||..|..-|..|... +.+|..||..+ +.-....++-| +=+|..++.|++|..|| .+. .+. ..+..++
T Consensus 3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~Fi---DRdp~~F~~IL~flR~~~~l~-~~~~~~~~~l~ 78 (100)
T d1t1da_ 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF---DRNRPSFDAILYFYQSGGRLR-RPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE---CSCSTTHHHHHHHHHTTSCCC-CCTTSCHHHHH
T ss_pred EEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCcCCCCCCeEEE---ecCHHHHHHHHHHHhcCCCcC-CCCcccHHHHH
Confidence 78999999999999999986 45777777632 22345557888 56999999999999995 654 433 3467888
Q ss_pred HHHhhhChHh
Q 004336 260 IFANKFCCER 269 (760)
Q Consensus 260 ~~a~~~~~~~ 269 (760)
.-|..|+++.
T Consensus 79 ~Ea~y~gi~~ 88 (100)
T d1t1da_ 79 EEIKFYELGE 88 (100)
T ss_dssp HHHHHTTCCH
T ss_pred HHHHHcCCCH
Confidence 8899999875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=3.6 Score=42.21 Aligned_cols=297 Identities=9% Similarity=-0.049 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhccccccCC-cCcHHH-HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 424 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDD-IGSLSV-IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 501 (760)
Q Consensus 424 ~a~~~lg~l~~~~g~~~~A~~~l~l~~~~~~~~d-~~sl~~-~~~al~~~p~~~~~~~~la~~~~~~g~~~~Ai~~l~ka 501 (760)
......+.+....|+.+.|...+. ..|..... +..-.. +........-....+..........|++..|...+..+
T Consensus 103 ~~~c~~~~A~~~~g~~~~a~~~~~--~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l 180 (450)
T d1qsaa1 103 EAQCNYYYAKWNTGQSEEAWQGAK--ELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM 180 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH--HHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHH--HHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhC
Confidence 555566777788899888877552 22332222 221122 33333333445556666666777777777666654321
Q ss_pred -------------HHhCCC-----------cHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHc
Q 004336 502 -------------RQHAAS-----------DHER--LVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALAD 554 (760)
Q Consensus 502 -------------l~~~p~-----------~~~a--~~~Lg~i~~~~g~~eeAl~~~~~al~l~p~~-~a~~~la~~l~~ 554 (760)
+..+|. +... ....+..-....+.+.|...+.......+.. ..+......+..
T Consensus 181 ~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~ 260 (450)
T d1qsaa1 181 PADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAW 260 (450)
T ss_dssp CGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHH
Confidence 111222 2111 1223333344567788888877766655444 333333333322
Q ss_pred ccCCCCcchhhhhHHHHHHhhhHhh----ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cchHHHHHHHHHHHHc
Q 004336 555 SSQDSSCSSTVVSLLEDALKCPSDR----LRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLK 628 (760)
Q Consensus 555 ~~~~~~~~~~~~~~leeAl~~~~~~----l~~~~a~~~Lg~~y~~~g~~~eA~~~~~~Al~~--~~~~a~~~La~~~~~~ 628 (760)
....... .+.+....... .........++ .....+++..+...+...-.. ......|.+|+.+...
T Consensus 261 ~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~ 332 (450)
T d1qsaa1 261 RLMGNDV-------TDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLER 332 (450)
T ss_dssp TSCSTTC-------CHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHT
T ss_pred HHHHcCc-------hHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHc
Confidence 2111111 12222222111 11122222333 345678999998888765331 1227889999999999
Q ss_pred CCHHHHHHHHHHHHHhccCcHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHH
Q 004336 629 NNKTTAYEEMTKLIKKARNNASAYEKRS--EYCDRELTRADLEMVTQLDPLRV---YPYRYRAAVLMDSHKENEAIAELS 703 (760)
Q Consensus 629 g~~~~A~~~l~~al~~~~~~~~~~~~~~--~~~~~~~A~~~l~kal~l~p~~~---~~~~~La~~~~~~g~~~eAi~~l~ 703 (760)
|+.++|...|..+.. .+. .|-.++ ..|..-. .. .......+... ..-...+..++..|+..+|...+.
T Consensus 333 G~~~~A~~~~~~~a~-~~~---fYG~LAa~~Lg~~~~-~~--~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~ 405 (450)
T d1qsaa1 333 GREAEAKEILHQLMQ-QRG---FYPMVAAQRIGEEYE-LK--IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWA 405 (450)
T ss_dssp TCHHHHHHHHHHHHT-SCS---HHHHHHHHHTTCCCC-CC--CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CChhhHHHHHHHHhc-CCC---hHHHHHHHHcCCCCC-CC--cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHH
Confidence 999999999998865 332 333331 1121000 00 00000001110 123456788999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004336 704 RAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAA 738 (760)
Q Consensus 704 kal~~~p~~~~~~l~a~~~~~~g~~~~A~~~~~~a 738 (760)
.++... +.......+.+....|.++.|+....++
T Consensus 406 ~l~~~~-~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 406 NLVKSK-SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhCC-CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 887644 3445555688888889999999888776
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.87 E-value=3.4 Score=40.72 Aligned_cols=60 Identities=12% Similarity=0.008 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004336 585 ALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 646 (760)
Q Consensus 585 a~~~Lg~~y~~~g~~~eA~~~~~~Al~~~~~~a~~~La~~~~~~g~~~~A~~~l~~al~~~~ 646 (760)
.|..+..+|.+.|++++|+...-.-.. ...-....-.++.+.++.+...+...-.++..|
T Consensus 176 l~~elv~Ly~~~~~~~~A~~~~i~~~~--~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p 235 (336)
T d1b89a_ 176 LWAELVFLYDKYEEYDNAIITMMNHPT--DAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 235 (336)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHSTT--TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHHcch--hhhhHHHHHHHHHccCChHHHHHHHHHHHHcCH
Confidence 345567778888888888766533110 001112223344555565555555555555555
|
| >d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Skp1 dimerisation domain-like superfamily: Skp1 dimerisation domain-like family: Skp1 dimerisation domain-like domain: Cyclin A/CDK2-associated p45, Skp1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.45 E-value=0.2 Score=35.61 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=31.6
Q ss_pred CChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcC
Q 004336 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~ 283 (760)
++.+.+.+|+.|||.+.++.|.+.||..++..+.
T Consensus 10 ~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ik 43 (55)
T d1fs1b1 10 VDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 43 (55)
T ss_dssp SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHc
Confidence 7788999999999999999999999999998774
|
| >d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Skp1 dimerisation domain-like superfamily: Skp1 dimerisation domain-like family: Skp1 dimerisation domain-like domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.89 E-value=0.28 Score=36.78 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=31.7
Q ss_pred CChhhHHHHHHHHhhhChHhHHHHHHHHHHhhcC
Q 004336 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (760)
Q Consensus 250 ~~~~~v~~ll~~a~~~~~~~~~~~c~~~l~~~~~ 283 (760)
++.+++.+|+.|||.++++.|.+.||..++..+.
T Consensus 11 ~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ik 44 (70)
T d1nexa1 11 VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 44 (70)
T ss_dssp SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHc
Confidence 6789999999999999999999999999998773
|
| >d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.27 E-value=0.32 Score=36.70 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=41.1
Q ss_pred eEEEEe-cCeEeehhHHHHhcCCHHHHhhccCC----CCCCccceeEecCCCCCHHHHHHHHhccc
Q 004336 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGS----FMESLCEDIDLSENNISPSGLRIISDFSV 243 (760)
Q Consensus 183 dv~~~~-~~~~~~~hr~~la~~s~yf~amf~~~----~~e~~~~~v~~~~~~i~~~~~~~~~~~~y 243 (760)
-|+|+- +|.+|.+.|. .|-.|.--+.|+... ..+.....|.|+ +|+..+|+.|++|.+
T Consensus 2 ~I~L~SsDg~~F~v~~~-~a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~--~V~s~iL~kVieyc~ 64 (72)
T d1nexa2 2 NVVLVSGEGERFTVDKK-IAERSLLLKNYLNDMGDDDDEDDDEIVMPVP--NVRSSVLQKVIEWAE 64 (72)
T ss_dssp EEEEECTTSCEEEEEHH-HHTTSHHHHHTC-------------CEEECT--TCCHHHHHHHHHHHH
T ss_pred eeEEEeCCCCEEEecHH-HHHHHHHHHHHHHhcCccccccCCCCcccCC--CcCHHHHHHHHHHHH
Confidence 467765 6678998777 678899999999532 223344579998 799999999999975
|
| >d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Cyclin A/CDK2-associated p45, Skp1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.68 E-value=0.3 Score=35.51 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=41.7
Q ss_pred EEEEe-cCeEeehhHHHHhcCCHHHHhhccCCCCCCccceeEecCCCCCHHHHHHHHhccc
Q 004336 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV 243 (760)
Q Consensus 184 v~~~~-~~~~~~~hr~~la~~s~yf~amf~~~~~e~~~~~v~~~~~~i~~~~~~~~~~~~y 243 (760)
|+|.. +|.+|.+.|. .|-.|.-.+.|+-+. ..+.|.|+ +|+..+|+.|++|.+
T Consensus 3 I~L~SsDg~~f~v~~~-~a~~S~tI~~ml~~~----~~~~Ipl~--~V~s~iL~kVieyc~ 56 (61)
T d1fs1b2 3 IKLQSSDGEIFEVDVE-IAKQSVTIKTMLEDL----GMDPVPLP--NVNAAILKKVIQWCT 56 (61)
T ss_dssp EEEECTTSCEEEEEGG-GGGTCHHHHHHHHHT----CCSSEECT--TCCHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEecHH-HHHHhHHHHHHHhcC----CCCCcccC--CcCHHHHHHHHHHHH
Confidence 56654 5678888776 678899999998642 23469998 799999999999975
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.92 E-value=17 Score=35.41 Aligned_cols=135 Identities=11% Similarity=0.054 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH----------HHHHH
Q 004336 618 HQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPY----------RYRAA 687 (760)
Q Consensus 618 ~~~La~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~kal~l~p~~~~~~----------~~La~ 687 (760)
|-.+..+|.+.|+++.|+..+-.-.....+....-.......+.+...+.+...++.+|....-. ..+..
T Consensus 177 ~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~ 256 (336)
T d1b89a_ 177 WAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVN 256 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHH
Confidence 44567788889999888776543211111111111111122333333333333344444322110 11222
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhccC
Q 004336 688 VLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSHE 759 (760)
Q Consensus 688 ~~~~~g~~~eAi~~l~kal~~~p~~~~~~-l~a~~~~~~g~~~~A~~~~~~aL~l~P~~~~~l~~~~r~~~~~ 759 (760)
...+.++..-...+++.... .++..++ -.+.+|...+|++. .++.++. .++-+.+.+-+|+.+++
T Consensus 257 ~~~k~~~l~li~p~Le~v~~--~n~~~vn~al~~lyie~~d~~~----l~~~i~~-~~~fd~~~l~~~le~h~ 322 (336)
T d1b89a_ 257 YFSKVKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQA----LRTSIDA-YDNFDNISLAQRLEKHE 322 (336)
T ss_dssp HHHHTTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHH----HHHHHHH-CCCSCHHHHHHHHTTCS
T ss_pred HHHhcCCcHHHHHHHHHHHH--cChHHHHHHHHHHHhCcchhHH----HHHHHHH-hcccCHHHHHHHHhhCc
Confidence 33344444444444444322 2233444 33777777787643 4555543 34445666777776654
|