Citrus Sinensis ID: 004349

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------76
MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPKIVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVSKMSVQTGVLCEYTRMIIVETDERNNASESPGTKKGSKKSDHQKILDSEVPKTIMLQNLGIGFGDLTATAENFPPGSEIPKLPEVAEIFVKAASNCCSTLGNKCCCLCCIECCNKLNDQCVIVLTQLCTALACFGCFECCSNLCCCGQDGQ
cHHHHHHHHHHccccccEEEccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEcccccEEEEEEEEEccccEEEEEEEEEEccEEEEEEEEEcHHHHHHccccccccccccccccEEEEEcccccccEEEEEEEEEEEEEccccEEEEEEEEEcccccccccccccccEEEEEEEEccccEEEEccccccccEEEEEcccEEEEEEEccccccccccEEEEEEEccccccccEEEEcccccccccccEEEEEEccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHcccccccEEEEEEEcccEEEcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHccccEEEEEEEcccccccEEEccccccccccccEEEEEEEEccccccEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccEEEEEccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEccccccccccc
cHHHHHHHHHHcccHcEEEEcccccccccccccccccccccHHHccccccEEEEEEcccccccccccccccccEcccccccccEEcccEEEEEEEEEEEEEEEEEEEEEEEEEEEEcccEEEEEEEEEcccccEEEEEEEEEcccHHHHHHHHHHHHHHccccccEEEcccccccEEEEEEcccccccEEEEEEEEEEHHHHccccEEEEEEcccccHEccccccccccEEEEEEEccccccHHHccccccccHHHHHEcccccccccccccccccccEEEEEEEccccccccEEEEcccccccccccEEEEEEccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHcccccccEEEEEEcccEEEccccHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccEEEEEEccccccccccHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEccccccHHHccccEEEEEEEEccccccEEEEEEEEcccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccEEEEEcccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
MADDFVKAVEDGLKLSKrlyfgkdrpvtppkvpssmdksgavdmllpkspmvyavitdpkivdnpdipsyqpyvhgrcdppsliplqmnaveldvdcyldtafvrVSGTWRVHcvmgskscdcriavpmgdqgsilGVEAEISGKSYHTQLIALgendgagksasvetgsflkpniftltlpqidggsyLSIRLRWSqklsyrdgefsvnvpfkfpeyvtpaikkipkrekihlnvnagtgteVLCNTSSHHLKQLRRDVGKLGYSYESEvlkwsnidfdfsytvspshifggvllqspslhdvdqREMFCMyllpgtaksrkvFKKDVIFIVDIsgsmqgkpleDTKNALAVALskldpgdsfnivafngetylFSTSMELATKEAVERAHQWIGINfiaggstnicAPLTKAVEMLtnsrgsipiiflvtdgaveDERQICDAMKsrltnggsicpriytfgigsyCNHYFLRMLAMISRGyygaaydldSIEIQMQKLFTRGFSSVLANIAIDTlkdldefemypsripdlssesplivsgryqgkfpdtlkakgflgdLSNFVVELKLQLakdipldrICAKQQIDLLTAQAWFSEDKRLEEKVSKMSVQTGVLCEYTRMIIVEtdernnasespgtkkgskksdhqkildsevpktimlqnlgigfgdltataenfppgseipklpeVAEIFVKAASNCcstlgnkccclccieccnkLNDQCVIVLTQLCTALacfgcfeccsnlcccgqdgq
MADDFVKAVEDGlklskrlyfgkdrpvtppkvpssmdksGAVDMLLPKSPMVYAVITDPKIVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSyrdgefsvnvpfkfpeyVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPgtaksrkvFKKDVIFIVDisgsmqgkplEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMksrltnggsiCPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPsripdlssesplIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSEDKRLeekvskmsvqtgvlcEYTRMIIvetdernnasespgtkkgskksdhqkILDSEVPKTIMLQNLGIGFGDLTATAENFPPGSEIPKLPEVAEIFVKAASNCCSTLGNKCCCLCCIECCNKLNDQCVIVLTQLCTALACFGCFECCSNLCCCGQDGQ
MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPKIVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVSKMSVQTGVLCEYTRMIIVETDERNNASESPGTKKGSKKSDHQKILDSEVPKTIMLQNLGIGFGDLTATAENFPPGSEIPKLPEVAEIFVKAASnccstlgnkccclccieccnklnDQCVIVLTQLCTALACFGCFECCSNLCCCGQDGQ
******************LYF***********************LLPKSPMVYAVITDPKIVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGEN********VETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSM********KNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRI*******PLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVSKMSVQTGVLCEYTRMIIVE*******************************KTIMLQNLGIGFGDLTATAENFPPGSEIPKLPEVAEIFVKAASNCCSTLGNKCCCLCCIECCNKLNDQCVIVLTQLCTALACFGCFECCSNLCCCG****
****FVKAVEDGLKLSKR**************************LLPKSPMVYAVITDPKIV***********************LQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIAL*********************IFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTE*****************************KWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTA***KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKF**************NF*****L**AKDIPLDRICAKQQIDL****************VSKMSVQTGVLCEYTRMIIV***************************************************************************NCCSTLGNKCCCLCCIECCNKLNDQCVIVLTQLCTALACFGCFECCSNLCCCGQ***
********VEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPKIVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVSKMSVQTGVLCEYTRMIIVETDER*******************KILDSEVPKTIMLQNLGIGFGDLTATAENFPPGSEIPKLPEVAEIFVKAASNCCSTLGNKCCCLCCIECCNKLNDQCVIVLTQLCTALACFGCFECCSNLCCCGQDGQ
****FVKAVEDGLKLSKRLYFGKDR*****************DMLLPKSPMVYAVITDPKIVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVSKMSVQTGVLCEYTRMIIVETD*******************************IMLQNLGIGFGDLTATAENFPPGSEIPKLPEVAEIFVKAASNCCSTLGNKCCCLCCIECCNKLNDQCVIVLTQLCTALACFGCFECCSNLCCCG****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiii
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MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPKIVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVSKMSVQTGVLCEYTRMIIVETDERNNASESPGTKKGSKKSDHQKILDSEVPKTIMLQNLGIGFGDLTATAENFPPGSEIPKLPEVAEIFVKAASNCCSTLGNKCCCLCCIECCNKLNDQCVIVLTQLCTALACFGCFECCSNLCCCGQDGQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query759 2.2.26 [Sep-21-2011]
A6X935 942 Inter alpha-trypsin inhib yes no 0.403 0.324 0.265 5e-18
P97278 914 Inter-alpha-trypsin inhib N/A no 0.342 0.284 0.244 3e-17
Q54DU5 932 von Willebrand factor A d yes no 0.387 0.315 0.253 4e-17
P56652 891 Inter-alpha-trypsin inhib yes no 0.395 0.336 0.236 1e-16
Q14624 930 Inter-alpha-trypsin inhib yes no 0.432 0.352 0.243 2e-16
Q9GLY5 903 Inter-alpha-trypsin inhib no no 0.412 0.346 0.238 5e-16
Q29052 902 Inter-alpha-trypsin inhib no no 0.238 0.200 0.294 1e-15
Q61704 889 Inter-alpha-trypsin inhib no no 0.324 0.276 0.251 1e-15
P79263 921 Inter-alpha-trypsin inhib no no 0.438 0.361 0.256 2e-15
Q06033 890 Inter-alpha-trypsin inhib no no 0.400 0.341 0.254 3e-15
>sp|A6X935|ITIH4_MOUSE Inter alpha-trypsin inhibitor, heavy chain 4 OS=Mus musculus GN=Itih4 PE=1 SV=2 Back     alignment and function desciption
 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 158/343 (46%), Gaps = 37/343 (10%)

Query: 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKE 386
           K+VIF++D SGSM GK ++ T+ AL   L  L P D FN++ F+GE   +  S+  AT+E
Sbjct: 273 KNVIFVIDKSGSMSGKKIQQTREALVKILKDLSPQDQFNLIEFSGEANQWKQSLVQATEE 332

Query: 387 AVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSR-------GSIPIIFLVTDG---AV 436
            + +A  +      A G TNI   +  AVE+L  S         S+ +I L+TDG     
Sbjct: 333 NLNKAVNYAS-RIRAHGGTNINNAVLLAVELLDRSNQAELLPSKSVSLIILLTDGDPTVG 391

Query: 437 EDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEI 496
           E    I         NG      ++  G G   N+ FL  +A+ + G     Y+     +
Sbjct: 392 ETNPTIIQNNVREAINGQY---SLFCLGFGFDVNYPFLEKMALDNGGLARRIYEDSDSAL 448

Query: 497 QMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKA 556
           Q+Q  +    + +L+++A +   D  E E+   +       S ++V+G+ Q + PD L A
Sbjct: 449 QLQDFYHEVANPLLSSVAFEYPSDAVE-EVTRYKFQHHFKGSEMVVAGKLQDQGPDVLLA 507

Query: 557 K--GFLGDLSNFVVELKLQLAKDIP------------LDRICA----KQQIDLLTAQAWF 598
           K  G +  + N   + +  +A+               ++R+ A    +QQ++   + A  
Sbjct: 508 KVSGQM-HMQNITFQTEASVAQQEKEFKSPKYIFHNFMERLWALLTIQQQLEQRIS-ASG 565

Query: 599 SEDKRLEEKVSKMSVQTGVLCEYTRMIIV--ETDERNNASESP 639
           +E + LE +V  +S++   +   T M++   E  E+   +E P
Sbjct: 566 AELEALEAQVLNLSLKYNFVTPLTHMVVTKPEGQEQFQVAEKP 608
Type II acute-phase protein (APP) involved in inflammatory responses to trauma. May also play a role in liver development or regeneration.
Mus musculus (taxid: 10090)
>sp|P97278|ITIH1_MESAU Inter-alpha-trypsin inhibitor heavy chain H1 OS=Mesocricetus auratus GN=ITIH1 PE=1 SV=1 Back     alignment and function description
>sp|Q54DU5|Y2028_DICDI von Willebrand factor A domain-containing protein DDB_G0292028 OS=Dictyostelium discoideum GN=DDB_G0292028 PE=4 SV=1 Back     alignment and function description
>sp|P56652|ITIH3_BOVIN Inter-alpha-trypsin inhibitor heavy chain H3 OS=Bos taurus GN=ITIH3 PE=1 SV=2 Back     alignment and function description
>sp|Q14624|ITIH4_HUMAN Inter-alpha-trypsin inhibitor heavy chain H4 OS=Homo sapiens GN=ITIH4 PE=1 SV=4 Back     alignment and function description
>sp|Q9GLY5|ITIH3_RABIT Inter-alpha-trypsin inhibitor heavy chain H3 OS=Oryctolagus cuniculus GN=ITIH3 PE=2 SV=1 Back     alignment and function description
>sp|Q29052|ITIH1_PIG Inter-alpha-trypsin inhibitor heavy chain H1 OS=Sus scrofa GN=ITIH1 PE=2 SV=1 Back     alignment and function description
>sp|Q61704|ITIH3_MOUSE Inter-alpha-trypsin inhibitor heavy chain H3 OS=Mus musculus GN=Itih3 PE=1 SV=3 Back     alignment and function description
>sp|P79263|ITIH4_PIG Inter-alpha-trypsin inhibitor heavy chain H4 OS=Sus scrofa GN=ITIH4 PE=1 SV=1 Back     alignment and function description
>sp|Q06033|ITIH3_HUMAN Inter-alpha-trypsin inhibitor heavy chain H3 OS=Homo sapiens GN=ITIH3 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query759
255550407755 inter-alpha-trypsin inhibitor heavy chai 0.994 1.0 0.653 0.0
224142781751 predicted protein [Populus trichocarpa] 0.989 1.0 0.678 0.0
225444686756 PREDICTED: inter-alpha-trypsin inhibitor 0.993 0.997 0.662 0.0
30686226754 inter-alpha-trypsin inhibitor heavy chai 0.993 1.0 0.633 0.0
225442075747 PREDICTED: uncharacterized protein LOC10 0.982 0.998 0.605 0.0
297844874755 hypothetical protein ARALYDRAFT_472131 [ 0.993 0.998 0.615 0.0
356565764754 PREDICTED: uncharacterized protein LOC10 0.993 1.0 0.643 0.0
8778285736 F14D16.26 [Arabidopsis thaliana] 0.969 1.0 0.613 0.0
357450103751 Inter-alpha-trypsin inhibitor heavy chai 0.986 0.997 0.595 0.0
356547946754 PREDICTED: uncharacterized protein LOC10 0.993 1.0 0.637 0.0
>gi|255550407|ref|XP_002516254.1| inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis] gi|223544740|gb|EEF46256.1| inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1044 bits (2700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/759 (65%), Positives = 620/759 (81%), Gaps = 4/759 (0%)

Query: 1   MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPK 60
           MA++F  +VEDGLKLSKRLY+GKDR V PP+    M+KS   +  LP +PM+YAVI+DP 
Sbjct: 1   MAEEFGNSVEDGLKLSKRLYYGKDRAVAPPRPVVHMEKSA--EAYLPTAPMIYAVISDPS 58

Query: 61  IVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKS 120
           IVDNPD+PSYQP+VHGRCDPP+LIPLQMN +EL+ D +LD+A VRV+G+WRVHCVMGSKS
Sbjct: 59  IVDNPDMPSYQPHVHGRCDPPALIPLQMNRIELEADSFLDSAIVRVNGSWRVHCVMGSKS 118

Query: 121 CDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLT 180
           CDCRIA+PMG+QGSILGVE E++ KSY+T+LIA+ +     K    E G FL P IFTLT
Sbjct: 119 CDCRIAIPMGEQGSILGVEVEVARKSYYTELIAMDDKKDTEKECRPENGGFLTPQIFTLT 178

Query: 181 LPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGT 240
           +P++DGGS +SI++ W QKL Y DGE S+ VPF FPE+VTPA+KK+PK+EKI LNVN+GT
Sbjct: 179 IPKVDGGSSISIKVSWIQKLLYHDGELSLTVPFSFPEFVTPAVKKLPKKEKILLNVNSGT 238

Query: 241 GTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPS 300
           GTEV+C T+SH LKQL+R+ GKLG+SYESEVL W++IDF  SY+VS SHIFGGV+LQSPS
Sbjct: 239 GTEVVCKTTSHPLKQLKREAGKLGFSYESEVLTWTDIDFAVSYSVSSSHIFGGVMLQSPS 298

Query: 301 LHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP 360
            HDVDQR+MF +YL PG   + KVF+K+++FIVDISGSM+GKPLE  KNA++ AL+KL+P
Sbjct: 299 AHDVDQRDMFYLYLFPGDQPNMKVFRKEIVFIVDISGSMEGKPLEGMKNAMSGALAKLNP 358

Query: 361 GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTN 420
            DSFNI+AFNGETYLFS+ MELAT++ VERA +W+ +NFIAGG TNI  PL +A+EM++N
Sbjct: 359 KDSFNIIAFNGETYLFSSLMELATEKTVERAVEWMNLNFIAGGGTNISVPLNQAMEMVSN 418

Query: 421 SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480
           ++GS+P+IFLVTDGAVEDER ICD+MK  +   G+ICPRIYTFGIG+YCNHYFLRMLA +
Sbjct: 419 TQGSLPVIFLVTDGAVEDERHICDSMKKYVRGKGAICPRIYTFGIGTYCNHYFLRMLATV 478

Query: 481 SRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPL 540
            RG Y AAYD+DS++ +M+  F+RG S+VLAN+ IDTL DLD+ E+YPS IPDLSSES L
Sbjct: 479 CRGQYDAAYDVDSVQARMEIFFSRGLSAVLANVMIDTLDDLDDVEVYPSNIPDLSSESLL 538

Query: 541 IVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSE 600
           I+SGRY G FP  +KA+G LG+LSNFVV+LK+Q  KD+P D+I AKQQIDLLTAQAW+SE
Sbjct: 539 IISGRYHGNFPGIVKAEGVLGNLSNFVVDLKIQKTKDVPFDKIFAKQQIDLLTAQAWYSE 598

Query: 601 DKRLEEKVSKMSVQTGVLCEYTRMIIVETDERNNASESPGTKKGSKKSDHQKILDSEVPK 660
           +K+LEEKV+KMS+QTGV  EYTR+ ++E +  N A ESP   K S K+D  K+ D +  +
Sbjct: 599 NKQLEEKVAKMSIQTGVASEYTRLTLLEMERGNQAIESPRAHKFSNKTDSLKV-DYKGRR 657

Query: 661 TIMLQNLGIGFGDLTATAENFPPGSEIPKLPEVAEIFVKAASNCCSTLGNKCCCLCCIEC 720
            I+LQN G+GFG+L ATA+N PPG E  KLPE AE+ +KAASNCC  +  +CCC+CCI+C
Sbjct: 658 RILLQNFGVGFGNLAATADNIPPGVEELKLPEAAELIMKAASNCCGRVCGQCCCMCCIQC 717

Query: 721 CNKLNDQCVIVLTQLCTALACFGCFECCSNLCCCGQDGQ 759
           C+++NDQC I LTQL  ALACFGC ECCS LCC G DG 
Sbjct: 718 CSRMNDQCAIALTQLFAALACFGCVECCS-LCCSGGDGH 755

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224142781|ref|XP_002324729.1| predicted protein [Populus trichocarpa] gi|222866163|gb|EEF03294.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225444686|ref|XP_002277641.1| PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 [Vitis vinifera] gi|297738541|emb|CBI27786.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|30686226|ref|NP_173345.2| inter-alpha-trypsin inhibitor heavy chain-like protein [Arabidopsis thaliana] gi|22531102|gb|AAM97055.1| unknown protein [Arabidopsis thaliana] gi|23197960|gb|AAN15507.1| unknown protein [Arabidopsis thaliana] gi|332191682|gb|AEE29803.1| inter-alpha-trypsin inhibitor heavy chain-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225442075|ref|XP_002271630.1| PREDICTED: uncharacterized protein LOC100244700 [Vitis vinifera] gi|297742983|emb|CBI35850.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297844874|ref|XP_002890318.1| hypothetical protein ARALYDRAFT_472131 [Arabidopsis lyrata subsp. lyrata] gi|297336160|gb|EFH66577.1| hypothetical protein ARALYDRAFT_472131 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356565764|ref|XP_003551107.1| PREDICTED: uncharacterized protein LOC100777542 [Glycine max] Back     alignment and taxonomy information
>gi|8778285|gb|AAF79294.1|AC068602_17 F14D16.26 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357450103|ref|XP_003595328.1| Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gi|355484376|gb|AES65579.1| Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356547946|ref|XP_003542365.1| PREDICTED: uncharacterized protein LOC100800834 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query759
TAIR|locus:2011236754 AT1G19110 "AT1G19110" [Arabido 0.993 1.0 0.613 8.2e-257
UNIPROTKB|Q47YR5786 CPS_3379 "von Willebrand facto 0.566 0.547 0.263 6.3e-28
TIGR_CMR|CPS_3379786 CPS_3379 "von Willebrand facto 0.566 0.547 0.263 6.3e-28
UNIPROTKB|Q8EF10760 SO_2195 "Inter-alpha-trypsin i 0.430 0.430 0.273 1.4e-25
TIGR_CMR|SO_2195760 SO_2195 "inter-alpha-trypsin i 0.430 0.430 0.273 1.4e-25
ZFIN|ZDB-GENE-050603-1 1174 itih6 "inter-alpha-trypsin inh 0.359 0.232 0.303 1.3e-16
MGI|MGI:109536 942 Itih4 "inter alpha-trypsin inh 0.296 0.238 0.301 3.4e-16
UNIPROTKB|H9GWG4 890 ITIH3 "Uncharacterized protein 0.542 0.462 0.220 4e-16
UNIPROTKB|P56652 891 ITIH3 "Inter-alpha-trypsin inh 0.541 0.461 0.219 8.5e-16
DICTYBASE|DDB_G0285981831 DDB_G0285981 "type A von Wille 0.451 0.412 0.243 1.6e-15
TAIR|locus:2011236 AT1G19110 "AT1G19110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2472 (875.2 bits), Expect = 8.2e-257, P = 8.2e-257
 Identities = 465/758 (61%), Positives = 575/758 (75%)

Query:     1 MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPK 60
             MA+DF +AV+DGLKL+KR+YFGKDR V  P+ P+ MD+S      LP +PMVYAVI DP 
Sbjct:     1 MAEDFARAVDDGLKLAKRIYFGKDRAVAAPRPPAPMDRSSTTQPYLPTAPMVYAVIPDPG 60

Query:    61 IVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKS 120
             IVDNPD+PSYQP+VHGRCDPP+LIPLQMN++ELDVDCYLDTA V V+G+WRVHCVMGSK 
Sbjct:    61 IVDNPDLPSYQPHVHGRCDPPALIPLQMNSIELDVDCYLDTALVTVTGSWRVHCVMGSKR 120

Query:   121 CDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLT 180
             CDCRIA+PMG+QGSILGVE EI  KSY TQLI   + +   K+A  ETG FLKPNIFTLT
Sbjct:   121 CDCRIAIPMGEQGSILGVEVEIPRKSYTTQLITAEDGNEFEKTALPETGGFLKPNIFTLT 180

Query:   181 LPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGT 240
             +PQ+DGG+ LSI++ WSQKL+Y  G+F +++PF FPEYVTPA+KKI KREKI+L+VNAGT
Sbjct:   181 IPQVDGGTNLSIKMTWSQKLTYNQGQFFLDIPFNFPEYVTPAVKKISKREKIYLSVNAGT 240

Query:   241 GTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPS 300
             GTEVLC   SH LK+  R  GKL ++YE++VLKWSN DF FSYT S S+I GG+ LQS  
Sbjct:   241 GTEVLCKGCSHQLKEKLRSAGKLRFAYEADVLKWSNTDFSFSYTASSSNIVGGLFLQSAP 300

Query:   301 LHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP 360
             +HDVDQR++F  YL PG  +  K FK++V+F+VDIS SM GKPLED KNA++ ALSKLDP
Sbjct:   301 VHDVDQRDIFSFYLFPGKQQKTKAFKREVVFVVDISKSMTGKPLEDVKNAISTALSKLDP 360

Query:   361 GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTN 420
             GDSFNI+ F+ +T LFSTSME  T +AVER  +W+  NF+    TN+  PL KAVEML+N
Sbjct:   361 GDSFNIITFSNDTALFSTSMESVTSDAVERGIEWMNKNFVVADGTNMLPPLEKAVEMLSN 420

Query:   421 SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480
             +RGSIP+IF VTDG+VEDER ICD MK  L + GS+ PRI+TFG+G +CNHYFL+MLA I
Sbjct:   421 TRGSIPMIFFVTDGSVEDERHICDVMKKHLASAGSVFPRIHTFGLGVFCNHYFLQMLANI 480

Query:   481 SRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPL 540
             S G + + Y+ D IE +M KLFT+  S++L NIAI+ L+ LDE E+YPS IPDL+S SPL
Sbjct:   481 SCGQHESVYNTDHIEERMDKLFTKALSTILVNIAIEPLQSLDEVEVYPSNIPDLTSASPL 540

Query:   541 IVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSE 600
             ++ GRY+GKFP+ + AKG LGDLS+F  +L +Q AKD+PLD++ AK  IDLLTA+AWFSE
Sbjct:   541 MIYGRYRGKFPENVIAKGLLGDLSSFSTDLTVQSAKDMPLDKVFAKNVIDLLTAEAWFSE 600

Query:   601 DKRLEEKVSKMSVQTGVLCEYTRMIIVETDERNNASESPGTKKGSKKSDHQKILDSEVPK 660
             DK+L+EK++K+S+QTGVL EYTRMI +E  E    SE+ G KK +   + QK++     +
Sbjct:   601 DKQLKEKIAKLSIQTGVLSEYTRMIQLENTEELKPSETGGKKKTTSNGEKQKMIS----R 656

Query:   661 TIMLQNLGIGFGDLTATAENFPPGSEIPKLPEVAEIFVKAASXXXXXXXXXXXXXXXXXX 720
             TI LQ+LGIGFGD TAT EN PPG    K P+ AE FVKAAS                  
Sbjct:   657 TIPLQSLGIGFGDKTATRENVPPGFGEQKAPDAAEKFVKAASSCCVSLCNKCCCMCCVQC 716

Query:   721 XXXXXDQCVIVLTQLCTALACFGCFECCSNLCCCGQDG 758
                  DQCV+V TQL TA+AC  CFECCS +CC G DG
Sbjct:   717 CSKLNDQCVLVFTQLFTAIACIACFECCSTVCCSGDDG 754
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009690 "cytokinin metabolic process" evidence=RCA
UNIPROTKB|Q47YR5 CPS_3379 "von Willebrand factor type A domain protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3379 CPS_3379 "von Willebrand factor type A domain protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EF10 SO_2195 "Inter-alpha-trypsin inhibitor family protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2195 SO_2195 "inter-alpha-trypsin inhibitor domain protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050603-1 itih6 "inter-alpha-trypsin inhibitor heavy chain family, member 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:109536 Itih4 "inter alpha-trypsin inhibitor, heavy chain 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|H9GWG4 ITIH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P56652 ITIH3 "Inter-alpha-trypsin inhibitor heavy chain H3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285981 DDB_G0285981 "type A von Willebrand factor (VWFA) domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query759
cd01461171 cd01461, vWA_interalpha_trypsin_inhibitor, vWA_int 3e-64
TIGR03788596 TIGR03788, marine_srt_targ, marine proteobacterial 2e-57
cd00198161 cd00198, vWFA, Von Willebrand factor type A (vWA) 5e-24
pfam13768156 pfam13768, VWA_3, von Willebrand factor type A dom 4e-18
pfam13519172 pfam13519, VWA_2, von Willebrand factor type A dom 1e-17
smart00327175 smart00327, VWA, von Willebrand factor (vWF) type 3e-17
pfam00092178 pfam00092, VWA, von Willebrand factor type A domai 6e-17
cd01463190 cd01463, vWA_VGCC_like, VWA Voltage gated Calcium 3e-15
cd01465170 cd01465, vWA_subgroup, VWA subgroup: Von Willebran 9e-14
cd01466155 cd01466, vWA_C3HC4_type, VWA C3HC4-type: Von Wille 3e-10
cd01450161 cd01450, vWFA_subfamily_ECM, Von Willebrand factor 3e-10
COG2304399 COG2304, COG2304, Uncharacterized protein containi 4e-10
cd01467180 cd01467, vWA_BatA_type, VWA BatA type: Von Willebr 6e-07
cd01462152 cd01462, VWA_YIEM_type, VWA YIEM type: Von Willebr 6e-06
cd01464176 cd01464, vWA_subfamily, VWA subfamily: Von Willebr 8e-06
TIGR02442633 TIGR02442, Cob-chelat-sub, cobaltochelatase subuni 8e-05
COG1240261 COG1240, ChlD, Mg-chelatase subunit ChlD [Coenzyme 2e-04
TIGR02031589 TIGR02031, BchD-ChlD, magnesium chelatase ATPase s 2e-04
cd01451178 cd01451, vWA_Magnesium_chelatase, Magnesium chelat 5e-04
COG4245207 COG4245, TerY, Uncharacterized protein encoded in 0.004
>gnl|CDD|238738 cd01461, vWA_interalpha_trypsin_inhibitor, vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information 
 Score =  210 bits (538), Expect = 3e-64
 Identities = 73/176 (41%), Positives = 98/176 (55%), Gaps = 5/176 (2%)

Query: 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELAT 384
             K+V+F++D SGSM G  +E TK AL  AL  L PGD FNI+ F+     FS S   AT
Sbjct: 1   LPKEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPSSVSAT 60

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICD 444
            E V  A +++      GG TN+   L  A+E+L +S GS+P I L+TDG V +E QI  
Sbjct: 61  AENVAAAIEYVNRLQALGG-TNMNDALEAALELLNSSPGSVPQIILLTDGEVTNESQILK 119

Query: 445 AMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQK 500
            ++  L+       R++TFGIGS  N Y L  LA   RG     Y+ D IE Q+ +
Sbjct: 120 NVREALSGR----IRLFTFGIGSDVNTYLLERLAREGRGIARRIYETDDIESQLLR 171

Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix. Length = 171
>gnl|CDD|234353 TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein Back     alignment and domain information
>gnl|CDD|238119 cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>gnl|CDD|222367 pfam13768, VWA_3, von Willebrand factor type A domain Back     alignment and domain information
>gnl|CDD|222192 pfam13519, VWA_2, von Willebrand factor type A domain Back     alignment and domain information
>gnl|CDD|214621 smart00327, VWA, von Willebrand factor (vWF) type A domain Back     alignment and domain information
>gnl|CDD|215711 pfam00092, VWA, von Willebrand factor type A domain Back     alignment and domain information
>gnl|CDD|238740 cd01463, vWA_VGCC_like, VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>gnl|CDD|238742 cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>gnl|CDD|238743 cd01466, vWA_C3HC4_type, VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>gnl|CDD|238727 cd01450, vWFA_subfamily_ECM, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>gnl|CDD|225187 COG2304, COG2304, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|238744 cd01467, vWA_BatA_type, VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>gnl|CDD|238739 cd01462, VWA_YIEM_type, VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>gnl|CDD|238741 cd01464, vWA_subfamily, VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit Back     alignment and domain information
>gnl|CDD|224161 COG1240, ChlD, Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D Back     alignment and domain information
>gnl|CDD|238728 cd01451, vWA_Magnesium_chelatase, Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>gnl|CDD|226696 COG4245, TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 759
TIGR03788596 marine_srt_targ marine proteobacterial sortase tar 100.0
PF13768155 VWA_3: von Willebrand factor type A domain 99.92
TIGR02921952 PEP_integral PEP-CTERM family integral membrane pr 99.91
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 99.91
PF08487118 VIT: Vault protein inter-alpha-trypsin domain; Int 99.9
smart00609130 VIT Vault protein Inter-alpha-Trypsin domain. 99.9
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 99.88
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 99.85
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 99.85
cd01470198 vWA_complement_factors Complement factors B and C2 99.81
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 99.81
TIGR00868 863 hCaCC calcium-activated chloride channel protein 1 99.77
PRK13685326 hypothetical protein; Provisional 99.77
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 99.76
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 99.75
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 99.74
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 99.74
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 99.74
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 99.73
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 99.73
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 99.72
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 99.72
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 99.71
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 99.7
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 99.7
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 99.7
PTZ00441576 sporozoite surface protein 2 (SSP2); Provisional 99.66
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 99.66
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 99.64
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 99.64
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 99.63
PF00092178 VWA: von Willebrand factor type A domain; InterPro 99.63
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 99.61
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 99.61
PRK13406584 bchD magnesium chelatase subunit D; Provisional 99.57
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 99.56
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vW 99.56
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 99.53
PF1375778 VIT_2: Vault protein inter-alpha-trypsin domain 99.52
COG4245207 TerY Uncharacterized protein encoded in toxicity p 99.51
cd01481165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V 99.49
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 99.49
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 99.49
KOG2353 1104 consensus L-type voltage-dependent Ca2+ channel, a 99.44
cd01457199 vWA_ORF176_type VWA ORF176 type: Von Willebrand fa 99.43
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 99.38
PF10138200 vWA-TerF-like: vWA found in TerF C terminus ; Inte 99.34
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 99.22
cd01460266 vWA_midasin VWA_Midasin: Midasin is a member of th 99.14
COG2425437 Uncharacterized protein containing a von Willebran 99.13
PRK10997487 yieM hypothetical protein; Provisional 99.11
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 98.96
PF11775219 CobT_C: Cobalamin biosynthesis protein CobT VWA do 98.92
PF05762222 VWA_CoxE: VWA domain containing CoxE-like protein; 98.64
TIGR01651600 CobT cobaltochelatase, CobT subunit. This model de 98.59
PF09967126 DUF2201: VWA-like domain (DUF2201); InterPro: IPR0 98.45
PF04056193 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro 98.42
COG4867652 Uncharacterized protein with a von Willebrand fact 98.27
COG4548637 NorD Nitric oxide reductase activation protein [In 98.21
KOG3768 888 consensus DEAD box RNA helicase [General function 98.14
COG2304399 Uncharacterized protein containing a von Willebran 98.14
cd01468239 trunk_domain trunk domain. COPII-coated vesicles c 98.13
PF04811243 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I 98.04
cd01459254 vWA_copine_like VWA Copine: Copines are phospholip 98.03
COG4547620 CobT Cobalamin biosynthesis protein CobT (nicotina 98.01
KOG2807378 consensus RNA polymerase II transcription initiati 98.0
cd01479244 Sec24-like Sec24-like: Protein and membrane traffi 97.97
PF06707205 DUF1194: Protein of unknown function (DUF1194); In 97.73
PRK05325401 hypothetical protein; Provisional 97.67
PLN00162 761 transport protein sec23; Provisional 97.62
cd01478267 Sec23-like Sec23-like: Protein and membrane traffi 97.45
PTZ003951560 Sec24-related protein; Provisional 97.41
TIGR02877371 spore_yhbH sporulation protein YhbH. This protein 97.36
PF04285421 DUF444: Protein of unknown function (DUF444); Inte 97.32
KOG1327529 consensus Copine [Signal transduction mechanisms] 97.22
KOG1985 887 consensus Vesicle coat complex COPII, subunit SEC2 97.18
COG3552395 CoxE Protein containing von Willebrand factor type 97.14
smart00187423 INB Integrin beta subunits (N-terminal portion of 97.07
PF11443534 DUF2828: Domain of unknown function (DUF2828); Int 96.91
KOG19841007 consensus Vesicle coat complex COPII, subunit SFB3 96.89
PF07002146 Copine: Copine; InterPro: IPR010734 This represent 96.86
COG5028861 Vesicle coat complex COPII, subunit SEC24/subunit 96.7
PF03731224 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte 96.6
TIGR00627279 tfb4 transcription factor tfb4. This family is bas 96.58
COG5151421 SSL1 RNA polymerase II transcription initiation/nu 96.27
KOG2884259 consensus 26S proteasome regulatory complex, subun 96.24
COG3864396 Uncharacterized protein conserved in bacteria [Fun 95.84
PF03850276 Tfb4: Transcription factor Tfb4; InterPro: IPR0046 95.8
TIGR00578 584 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit 95.38
COG5148243 RPN10 26S proteasome regulatory complex, subunit R 95.25
COG2718423 Uncharacterized conserved protein [Function unknow 94.91
KOG4465598 consensus Uncharacterized conserved protein [Funct 94.31
PF14415253 DUF4424: Domain of unknown function (DUF4424) 93.83
PF11265226 Med25_VWA: Mediator complex subunit 25 von Willebr 93.73
COG1721416 Uncharacterized conserved protein (some members co 93.37
PF00362426 Integrin_beta: Integrin, beta chain; InterPro: IPR 93.3
COG5242296 TFB4 RNA polymerase II transcription initiation/nu 93.19
KOG1986 745 consensus Vesicle coat complex COPII, subunit SEC2 92.04
KOG2487314 consensus RNA polymerase II transcription initiati 80.64
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information 
Probab=100.00  E-value=2.9e-80  Score=722.80  Aligned_cols=528  Identities=23%  Similarity=0.409  Sum_probs=438.4

Q ss_pred             EEEEEEEEeceEEEEEEEEEEEccCCCCceeEEEEEeecCCCceEEEEEEEECCEEEEEEEEeeccccccc--ccccccc
Q 004349           91 VELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAG--KSASVET  168 (759)
Q Consensus        91 v~v~V~~~~~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLpe~a~V~~f~~~i~gk~i~g~V~eke~A~~~~--~~~~~~~  168 (759)
                      ++|++++.+.+|+|+++|+|+|+   +++++||+|+||||++|+|++|+|+||||+|+|+|+||++|++.|  ++++|++
T Consensus         3 ~~v~~~V~g~~A~v~v~q~f~N~---~~~~~E~~y~fPLp~~aaV~~f~~~i~~r~i~g~v~eKe~A~~~Ye~a~~~G~~   79 (596)
T TIGR03788         3 TDANITVTGLIARTEVTQTFRNP---SQFWVEGRYVFPLPENAAVDSLTMHIGERVIVGQIMPKAAARAIYEQAKAEGKK   79 (596)
T ss_pred             ceEEEEEEcceEEEEEEEEEECC---CCCcEEEEEEeeCCCCcEEEEEEEEECCEEEEEEEeeHHHHHHHHHHHHHhccc
Confidence            34444444568999999999994   689999999999999999999999999999999999999999755  4567889


Q ss_pred             ccce---eCCeEEEEccccCCCCEEEEEEEEEEEeeecCCeEEEEEeecc-CccccCccc----------------CCC-
Q 004349          169 GSFL---KPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKF-PEYVTPAIK----------------KIP-  227 (759)
Q Consensus       169 aall---~~n~F~~~VgnIppg~~v~V~l~Y~q~L~~~~g~~~l~lp~~~-P~~v~P~~~----------------~~~-  227 (759)
                      |+|+   ++|+|+++|||||||++++|+|+|+|+|.+++|.|++++|+++ |+|..+...                ..+ 
T Consensus        80 a~Lleq~~~~~F~~~V~nIpp~~~v~i~l~Y~q~L~~~~g~~~~~lP~~~~pry~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (596)
T TIGR03788        80 AALVEQQRPNLFTNKVANIGPGETVVVTIEYQQPVSYSSGTFSLRLPLTVTPRYIPGSTVNTVTDVNNSGWAIPTTQVPD  159 (596)
T ss_pred             eeeeecccCCceeEEeeccCCCCEEEEEEEEEEEeeecCCEEEEEeeeeecCCccCCccccccccccccccccccccccc
Confidence            9998   6999999999999999999999999999999999999999886 777532110                000 


Q ss_pred             ----------------CccceEEEEecCCCeeE-eeccCCcccceeeecCceEEEeeccccccccCCceEEEEEecCCCc
Q 004349          228 ----------------KREKIHLNVNAGTGTEV-LCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHI  290 (759)
Q Consensus       228 ----------------~~~~i~l~V~~~~~~~i-~i~s~sh~i~~~~~~~~~~~~~~~~~~~~~~~~DF~l~~~~~~~~~  290 (759)
                                      ...+++++++...+.++ .+.|++|+++..+...+...++++.. ..++++||+|.|++...+.
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~i~s~~h~i~~~~~~~~~~~v~l~~~-~~~~d~Df~l~~~~~~~~~  238 (596)
T TIGR03788       160 ADKISAPRVLDPDDDAPSSQASINVDLNAGLPLDSITSPSHPIQIEQQGQSGYTISLAQG-QVIADRDFVLTWRPAQGEA  238 (596)
T ss_pred             ccccCCccccCcccCCCCcceEEEEEecCCCccceeeCCCCceEeecCCCceEEEEeCCC-CcCCCCCEEEEEEeCCCCC
Confidence                            01223444444334333 57899999988776656666777643 3589999999999976543


Q ss_pred             ccceEEeCCCCCCCCCcceEEEEecCCCc-ccCCCCCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCCCCCeEEEEEE
Q 004349          291 FGGVLLQSPSLHDVDQREMFCMYLLPGTA-KSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAF  369 (759)
Q Consensus       291 ~~~v~~~~~~~~~~d~~~~f~l~~~P~~~-~~~~~~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F  369 (759)
                       +..++...   ..++.+||++++.|+.. ......+++++||||+||||.|.+++.+|+++..++..|+++|+|+|+.|
T Consensus       239 -p~~~~~~~---~~~~~~y~~~~~~pp~~~~~~~~~p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~ii~F  314 (596)
T TIGR03788       239 -PSAALFRE---QIGGERYGLAMVMPPTEAAVAQVLPRELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGDRFNIIQF  314 (596)
T ss_pred             -ceEEEEEE---ccCCCcEEEEEEeCCCccccccCCCceEEEEEECCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence             33333211   13456799988888763 33457789999999999999999999999999999999999999999999


Q ss_pred             CCceEEeeccccccCHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHHhcC-CCCCCEEEEEeCCCCCChHHHHHHHHH
Q 004349          370 NGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNS-RGSIPIIFLVTDGAVEDERQICDAMKS  448 (759)
Q Consensus       370 ~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~GgT~i~~aL~~A~~~l~~~-~~~~~~IiLlTDG~~~~~~~i~~~v~~  448 (759)
                      +++...+.+....++..+++++.++|. .+.++|||+|+.+|+.|++..... .+..+.|||||||.++++..+.+.++.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~a~~~i~-~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~  393 (596)
T TIGR03788       315 DSDVTLLFPVPVPATAHNLARARQFVA-GLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGNEDALFQLIRT  393 (596)
T ss_pred             CCcceEeccccccCCHHHHHHHHHHHh-hCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCCHHHHHHHHHH
Confidence            999998877777789999999999998 688999999999999999874322 345678999999999888777776654


Q ss_pred             HHHcCCCCCceEEEEEecCCcCHHHHHHHHhhcCCEEEEEcCCchHHHHHHHHHHhhhcceEeeEEEEecCCCcceeecc
Q 004349          449 RLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYP  528 (759)
Q Consensus       449 ~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~~gG~~~~v~d~~~l~~~l~~~l~~~~~p~l~di~l~~~~~~~~~ev~P  528 (759)
                      ..     .+.|||+||||+++|.++|+.||+.|+|.|+++.+.+++..++.+++.++.+|+++|+.++|.+ ....+++|
T Consensus       394 ~~-----~~~ri~tvGiG~~~n~~lL~~lA~~g~G~~~~i~~~~~~~~~~~~~l~~~~~p~l~~v~v~~~~-~~~~~v~P  467 (596)
T TIGR03788       394 KL-----GDSRLFTVGIGSAPNSYFMRKAAQFGRGSFTFIGSTDEVQRKMSQLFAKLEQPALTDIALTFDN-GNAADVYP  467 (596)
T ss_pred             hc-----CCceEEEEEeCCCcCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHHHHhhcCeEEEEEEEEEcC-Cccceecc
Confidence            32     2479999999999999999999999999999999999999999999999999999999999963 34678999


Q ss_pred             CCCCCCCCCCcEEEEEEEcCCCCCeEEEEEEeCCcccEEEEEeecc-ccCCchhHHHHHHHHHHHHHHHhh-ccchHHHH
Q 004349          529 SRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQL-AKDIPLDRICAKQQIDLLTAQAWF-SEDKRLEE  606 (759)
Q Consensus       529 ~~i~~lf~g~~liv~Gr~~g~~~~~v~l~G~~~~~~~~~~~l~~~~-~~~~~l~~lwA~~~I~~L~~~~~~-~~~~~~k~  606 (759)
                      ..+|+||.|++++|+||+. ..+.+++++|..+++ .|+.++++.. ..+..|++|||+++|++|+++.+. .+.+++++
T Consensus       468 ~~~p~L~~g~~l~v~g~~~-~~~~~i~v~g~~~~~-~~~~~~~~~~~~~~~~l~~lwA~~~I~~L~~~~~~~~~~~~~~~  545 (596)
T TIGR03788       468 SPIPDLYRGEPLQIAIKLQ-QAAGELQLTGRTGSQ-PWSQQLDLDSAAPGKGIDKLWARRKIDSLEDSLRYGANEEKVKD  545 (596)
T ss_pred             CCCccccCCCEEEEEEEec-CCCCeEEEEEEcCCc-eEEEEEecCCCCCcchHHHHHHHHHHHHHHHHHhhcCCcHHHHH
Confidence            9999999999999999974 467889999998887 4888888764 345779999999999999987654 34567899


Q ss_pred             HHHHHhhhhCCCCccceEEEEEcccCCCC
Q 004349          607 KVSKMSVQTGVLCEYTRMIIVETDERNNA  635 (759)
Q Consensus       607 eIv~LS~~y~ivS~yTSfVave~~~~~~~  635 (759)
                      +|++||++|+|+|+||||||||++..++.
T Consensus       546 ~Ii~Lsl~y~lvT~~TS~vave~~~~~~~  574 (596)
T TIGR03788       546 QVTALALNHHLVSPFTSFVAVEETPIRPA  574 (596)
T ss_pred             HHHHHHHHhCCCCcceeEEEEecccccCC
Confidence            99999999999999999999999887733

Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains Back     alignment and domain information
>smart00609 VIT Vault protein Inter-alpha-Trypsin domain Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family Back     alignment and domain information
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PRK10997 yieM hypothetical protein; Provisional Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain Back     alignment and domain information
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown Back     alignment and domain information
>TIGR01651 CobT cobaltochelatase, CobT subunit Back     alignment and domain information
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function Back     alignment and domain information
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex Back     alignment and domain information
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3768 consensus DEAD box RNA helicase [General function prediction only] Back     alignment and domain information
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>cd01468 trunk_domain trunk domain Back     alignment and domain information
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium Back     alignment and domain information
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] Back     alignment and domain information
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length Back     alignment and domain information
>PRK05325 hypothetical protein; Provisional Back     alignment and domain information
>PLN00162 transport protein sec23; Provisional Back     alignment and domain information
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>PTZ00395 Sec24-related protein; Provisional Back     alignment and domain information
>TIGR02877 spore_yhbH sporulation protein YhbH Back     alignment and domain information
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56 Back     alignment and domain information
>KOG1327 consensus Copine [Signal transduction mechanisms] Back     alignment and domain information
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) Back     alignment and domain information
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins Back     alignment and domain information
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines Back     alignment and domain information
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway Back     alignment and domain information
>TIGR00627 tfb4 transcription factor tfb4 Back     alignment and domain information
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair Back     alignment and domain information
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) Back     alignment and domain information
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2718 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4465 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14415 DUF4424: Domain of unknown function (DUF4424) Back     alignment and domain information
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells Back     alignment and domain information
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only] Back     alignment and domain information
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ] Back     alignment and domain information
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query759
4fx5_A464 VON willebrand factor type A; structural genomics, 2e-46
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 1e-17
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 9e-14
3ibs_A218 Conserved hypothetical protein BATB; structural ge 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 7e-08
2nvo_A535 RO sixty-related protein, RSR; alpha helical repea 1e-07
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 2e-07
3rag_A242 Uncharacterized protein; structural genomics, PSI- 3e-07
1pt6_A213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 8e-07
2b2x_A223 Integrin alpha-1; computational design, antibody-a 1e-06
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, anta 3e-06
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 4e-06
3zqk_A199 VON willebrand factor; blood clotting, adamts-13, 6e-06
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 7e-06
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 8e-06
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 4e-05
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 6e-05
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, 8e-05
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1. 4e-04
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Length = 464 Back     alignment and structure
 Score =  171 bits (434), Expect = 2e-46
 Identities = 47/233 (20%), Positives = 85/233 (36%), Gaps = 16/233 (6%)

Query: 327 KDVIFIVDISGSMQ--GKPLEDTKNALAVALSKLDPGDSFNIVAFNGET---YLFSTSME 381
              + I+D SGSM      +   K A  VA+  L  G  F +VA        Y     + 
Sbjct: 78  NVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLL 137

Query: 382 LATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQ 441
            A  ++   A + +G    A G T +   L +A  +   +  +I    L+TDG  E E  
Sbjct: 138 RADYQSRAAAKEAVG-RLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESETP 196

Query: 442 ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKL 501
              A   + + G          GIG       LR +A    G  G   D  ++    +++
Sbjct: 197 ADLARAIQSSIGNF---TADCRGIGEDWEPKELRKIADALLGTVGIIRDPATLAEDFREM 253

Query: 502 FTRGFSSVLANIAID-------TLKDLDEFEMYPSRIPDLSSESPLIVSGRYQ 547
             +     +A++A+        T++ + +     + +  +       ++G Y 
Sbjct: 254 TAKSMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYP 306
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Length = 189 Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Length = 182 Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Length = 218 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Length = 178 Back     alignment and structure
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} Length = 535 Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Length = 223 Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Length = 242 Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Length = 213 Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Length = 223 Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Length = 200 Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Length = 194 Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Length = 199 Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Length = 189 Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Length = 198 Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} Length = 185 Back     alignment and structure
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Length = 538 Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Length = 202 Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Length = 179 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query759
4fx5_A464 VON willebrand factor type A; structural genomics, 99.89
3ibs_A218 Conserved hypothetical protein BATB; structural ge 99.84
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, 99.84
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 99.83
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 99.81
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 99.8
3zqk_A199 VON willebrand factor; blood clotting, adamts-13, 99.8
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 99.79
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 99.78
2b2x_A223 Integrin alpha-1; computational design, antibody-a 99.78
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 99.78
1pt6_A213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 99.77
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 99.77
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 99.77
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, anta 99.77
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1. 99.74
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 99.73
2odp_A509 Complement C2; C3/C5 convertase, complement serin 99.72
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 99.71
1rrk_A497 Complement factor B; BB, hydrolase; 2.00A {Homo sa 99.71
3hrz_D741 Complement factor B; serine protease, glycosilated 99.7
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 99.56
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; 99.49
4b4t_W268 RPN10, 26S proteasome regulatory subunit RPN10; hy 99.48
2ww8_A 893 RRGA, cell WALL surface anchor family protein; IGG 99.38
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 99.19
1jey_B565 KU80; double-strand DNA break repair, non-homologo 99.06
2nvo_A535 RO sixty-related protein, RSR; alpha helical repea 98.91
3rag_A242 Uncharacterized protein; structural genomics, PSI- 98.74
1jey_A 609 KU70; double-strand DNA break repair, non-homologo 98.68
1pcx_A810 Protein transport protein SEC24; 2.50A {Saccharomy 98.34
2nut_A 769 Protein transport protein SEC23A; human copii SEC2 98.25
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 98.14
1m2o_A 768 SEC23, protein transport protein SEC23, SEC23P; zi 98.0
2iue_A212 Pactolus I-domain; membrane protein, CD, ITC, limb 97.93
3eh1_A751 Protein transport protein SEC24B; copii coat prote 97.92
3rag_A242 Uncharacterized protein; structural genomics, PSI- 97.86
3fcs_B690 Integrin beta-3; beta propeller, rossmann fold, EG 97.75
3t3p_B472 Integrin beta-3; integrin, cell adhesion, blood cl 97.45
3k6s_B 687 Integrin beta-2; cell receptor, adhesion molecule, 97.3
3efo_B770 SEC24 related gene family, member D; copii, coat p 97.28
3vi3_B454 Integrin beta-1; beta propeller fold, rossman fold 97.17
3v4v_B503 Integrin beta-7; cell adhesion, madcam-1, membrane 97.01
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 96.84
4g2a_A322 Hypothetical protein; two domains protein, yarhg d 96.56
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Back     alignment and structure
Probab=99.89  E-value=2.5e-22  Score=226.68  Aligned_cols=190  Identities=22%  Similarity=0.211  Sum_probs=164.2

Q ss_pred             CCCceEEEEEcCCCCCC--CCChHHHHHHHHHHHHhCCCCCeEEEEEECCceEEeecc---ccccCHHHHHHHHHHHhcc
Q 004349          324 VFKKDVIFIVDISGSMQ--GKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTS---MELATKEAVERAHQWIGIN  398 (759)
Q Consensus       324 ~~~~dvvfVlD~SGSM~--g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~---~~~~t~~~i~~a~~~I~~~  398 (759)
                      ..+.+++||||+||||.  +.+|+.+|+++..+++.|.++++|+|+.|++.+..+.+.   ....+..+.+.+.++|+ .
T Consensus        75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~-~  153 (464)
T 4fx5_A           75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVG-R  153 (464)
T ss_dssp             -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHH-T
T ss_pred             CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHH-c
Confidence            46789999999999999  899999999999999999999999999999999887765   34457788888999997 7


Q ss_pred             ccCCCCCchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHH
Q 004349          399 FIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML  477 (759)
Q Consensus       399 ~~~~GgT~i~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~-~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~L  477 (759)
                      +.+.|||+++.||+.|++.+...++..+.|||||||.+++.. .......+..    ..+++||+||+|.+.|..+|+.|
T Consensus       154 L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~~~~l~~~~~a~----~~~i~i~tiGiG~~~d~~~L~~I  229 (464)
T 4fx5_A          154 LHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESETPADLARAIQSS----IGNFTADCRGIGEDWEPKELRKI  229 (464)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSCHHHHHHHHHHH----TTTCEEEEEEESSSSCHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCccCHHHHHHH
Confidence            889999999999999999998766667899999999987432 2222222221    23589999999999999999999


Q ss_pred             HhhcCCEEEEEcCCchHHHHHHHHHHhhhcceEeeEEEEec
Q 004349          478 AMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTL  518 (759)
Q Consensus       478 A~~~gG~~~~v~d~~~l~~~l~~~l~~~~~p~l~di~l~~~  518 (759)
                      |..++|.|+++.+.+++...+.+++..+.++.++|+.+.+.
T Consensus       230 A~~tgG~~~~v~d~~~L~~~f~~i~~~~~s~~~~dv~l~l~  270 (464)
T 4fx5_A          230 ADALLGTVGIIRDPATLAEDFREMTAKSMGKEVADVALRLW  270 (464)
T ss_dssp             HHHTTCCEEEESSGGGHHHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred             HHhCCCEEEEcCCHHHHHHHHHHHHHHhhchheeeeEEEEE
Confidence            99999999999999999999999999999999999988864
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Back     alignment and structure
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Back     alignment and structure
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Back     alignment and structure
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Back     alignment and structure
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Back     alignment and structure
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* Back     alignment and structure
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Back     alignment and structure
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* Back     alignment and structure
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Back     alignment and structure
>4g2a_A Hypothetical protein; two domains protein, yarhg domain (PFAM13308), DUF4424 (PF14 structural genomics; HET: MSE; 2.33A {Legionella pneumophila subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 759
d1q0pa_209 c.62.1.1 (A:) Complement factor B domain {Human (H 5e-13
d1yvra2174 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprot 3e-11
d1shux_181 c.62.1.1 (X:) Capillary morphogenesis protein 2 do 7e-11
d1atza_184 c.62.1.1 (A:) von Willebrand factor A3 domain, vWA 3e-10
d1n3ya_189 c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo 3e-09
d1jeya2220 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain 2e-08
d1mf7a_194 c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, M 2e-08
d1mjna_179 c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte funct 5e-08
d1pt6a_192 c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo s 8e-07
d1ijba_202 c.62.1.1 (A:) von Willebrand factor A1 domain, vWA 2e-06
d1jeyb2236 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain 2e-06
d1v7pc_193 c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo s 6e-06
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Length = 209 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (161), Expect = 5e-13
 Identities = 33/199 (16%), Positives = 59/199 (29%), Gaps = 28/199 (14%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGD---SFNIVAFNGETYLFSTSMELAT 384
           ++  ++D S S+        K +L   + K+        + +V +     ++    E  +
Sbjct: 3   NIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADS 62

Query: 385 KEAVERAHQWIGINFI---AGGSTNICAPLTKAVEMLTNSRGSIP--------IIFLVTD 433
             A     Q   IN+        TN    L     M++      P        +I L+TD
Sbjct: 63  SNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTD 122

Query: 434 GAVEDERQICDA---------MKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGY 484
           G                    +     N       +Y FG+G   N   +  LA      
Sbjct: 123 GLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNE 182

Query: 485 YGAAY-----DLDSIEIQM 498
                     +L+ +  QM
Sbjct: 183 QHVFKVKDMENLEDVFYQM 201
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 174 Back     information, alignment and structure
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 181 Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 220 Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 194 Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 179 Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 202 Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query759
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 99.73
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 99.72
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 99.69
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 99.65
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 99.65
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 99.64
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 99.63
d1pt6a_192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 99.59
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 99.56
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 99.35
d1yvra2174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 99.31
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 99.23
d1tyeb2248 Integrin beta A domain {Human (Homo sapiens) [TaxI 98.86
d1pd0a3252 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 98.05
d2qtva3271 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 98.01
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Capillary morphogenesis protein 2 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.6e-17  Score=159.03  Aligned_cols=173  Identities=14%  Similarity=0.198  Sum_probs=133.0

Q ss_pred             CCceEEEEEcCCCCCCCCChHHHHHHHHHHHHhCC-CCCeEEEEEECCceEEeeccccccCHHHHHHHHHHHhccccCCC
Q 004349          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG  403 (759)
Q Consensus       325 ~~~dvvfVlD~SGSM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~~~~~~G  403 (759)
                      .+.|++||||.||||.+ .+...|+++..+++.+. +++|++|+.|++..+.+.+...  +.+.+.++++.+. .....|
T Consensus         4 ~~~Div~llD~S~Sm~~-~~~~~k~~~~~~~~~~~~~~~rvglv~fs~~~~~~~~l~~--~~~~~~~~l~~l~-~~~~~g   79 (181)
T d1shux_           4 RAFDLYFVLDKSGSVAN-NWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTG--DRGKISKGLEDLK-RVSPVG   79 (181)
T ss_dssp             SCEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEEC--CHHHHHHHHHHHH-TCCCCS
T ss_pred             CceEEEEEEeCCCCccc-CHHHHHHHHHHHHHHhcCCCCEEEEEEeecceEEEEEecC--CHHHHHHHhhhcc-cccCCC
Confidence            46899999999999987 67889999999998875 4679999999999988776543  6677888888887 677889


Q ss_pred             CCchHHHHHHHHHHHhcC--CCCCCEEEEEeCCCCCChH-HHHHHHHHHHHcCCCCCceEEEEEecCCcCHHHHHHHHhh
Q 004349          404 STNICAPLTKAVEMLTNS--RGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI  480 (759)
Q Consensus       404 gT~i~~aL~~A~~~l~~~--~~~~~~IiLlTDG~~~~~~-~i~~~v~~~~~~~~~~~~rI~t~GiG~~~n~~lL~~LA~~  480 (759)
                      +|++..||+.+.+.+...  .+..+.||++|||..++.. .......+.+++   .++++|+||+|+ .+...|+.||..
T Consensus        80 ~t~~~~al~~~~~~~~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~k~---~gv~v~~vgig~-~~~~~L~~ia~~  155 (181)
T d1shux_          80 ETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRS---LGASVYCVGVLD-FEQAQLERIADS  155 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHH---TTCEEEEEECSS-CCHHHHHHHSSS
T ss_pred             cchHHHHHHHHHHHhhhcccCCCceEEEEecCCCCCCCccHHHHHHHHHHHH---CCCEEEEEEeCc-cCHHHHHHHhCC
Confidence            999999999999988653  3456789999999986543 222333333333   358999999996 599999999987


Q ss_pred             cCCEEEEEcCCchHHHHHHHHHHhh
Q 004349          481 SRGYYGAAYDLDSIEIQMQKLFTRG  505 (759)
Q Consensus       481 ~gG~~~~v~d~~~l~~~l~~~l~~~  505 (759)
                      .++.|....+.+++...+..+.+++
T Consensus       156 ~~~~~~~~~~~~~L~~~~~~i~~~i  180 (181)
T d1shux_         156 KEQVFPVKGGFQALKGIINSILAQS  180 (181)
T ss_dssp             GGGEEESSSTTHHHHHHHHHHHHTB
T ss_pred             CCceEEecCCHHHHHHHHHHHHhhh
Confidence            7766554445567777666665543
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure