Citrus Sinensis ID: 004354
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 759 | 2.2.26 [Sep-21-2011] | |||||||
| A5PK19 | 699 | Methyltransferase-like pr | yes | no | 0.815 | 0.885 | 0.319 | 4e-83 | |
| Q8N6R0 | 699 | Methyltransferase-like pr | yes | no | 0.810 | 0.879 | 0.319 | 9e-82 | |
| Q91YR5 | 698 | Methyltransferase-like pr | yes | no | 0.802 | 0.872 | 0.311 | 3e-80 | |
| A5WVX1 | 690 | Methyltransferase-like pr | yes | no | 0.843 | 0.927 | 0.295 | 4e-74 | |
| Q29LW1 | 673 | Methyltransferase-like pr | yes | no | 0.790 | 0.891 | 0.289 | 2e-60 | |
| Q9VIK9 | 673 | Methyltransferase-like pr | yes | no | 0.787 | 0.888 | 0.278 | 8e-59 | |
| Q6NTR1 | 693 | Methyltransferase-like pr | N/A | no | 0.487 | 0.533 | 0.316 | 2e-48 | |
| Q10711 | 883 | Endothelin-converting enz | no | no | 0.155 | 0.133 | 0.320 | 5e-09 | |
| Q80Z60 | 881 | Endothelin-converting enz | no | no | 0.133 | 0.114 | 0.336 | 1e-08 | |
| O60344 | 883 | Endothelin-converting enz | no | no | 0.135 | 0.116 | 0.336 | 2e-08 |
| >sp|A5PK19|MET13_BOVIN Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 309 bits (792), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 232/727 (31%), Positives = 347/727 (47%), Gaps = 108/727 (14%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVVGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------------GG 131
E LYD G+ I N+D S+VVI M RN R M + MDMT M+ G
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 132 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 188
LDA++ E L ++ L+EV R+L+ GG+++C++LA++HVL F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRV 183
Query: 189 HAIP----QKSSSEP--SLQTFMVVADKEN--SSVVLQVTSSFDHSSLDCNKNQAFGIHE 240
H + Q +EP SL F + K + LQ+ F+ + + K E
Sbjct: 184 HQVASSQDQLLEAEPRFSLPVFAFIMTKFRPVTGSALQI---FELCAQEQGKPVRLESAE 240
Query: 241 ALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAV- 299
L + R++Y+ LY K + ++S +L G G+ ++ V
Sbjct: 241 QLAEAVRERQQYAWLCSQLYR--------KAGLGSVS----LDLCNGDTGEPRYTLHVVD 288
Query: 300 ---LLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSH 356
+ +R+N + +FI+P+ R EWLF EEG+ + S+ RLI V L
Sbjct: 289 SPTVKPSRDN------HFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRGQ 342
Query: 357 ASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVED 416
MD IQ +LS V +LAP Q+PF+ G I R V HQA S L+G ++ED
Sbjct: 343 QYEGMDSIQAELSARVMELAPAGMPAQLQVPFLSVGGDIGVRIVQHQACSPLSGDYVIED 402
Query: 417 LVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTD---VETERKKA 473
+ + D + FRRL+F + +VQSEA L++D SHR + +K
Sbjct: 403 V--QGDDKRY----------FRRLIFLSNRNVVQSEARLLQD-VSHRAQKKRKKDRKKHR 449
Query: 474 SSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKA 533
+ + Q +S D YL +H +I+G L+ + + +
Sbjct: 450 PADTPEDLPAAQGQSIDK--------SYLCCEHHKAMIAGLALLKN---PELLLETPLAL 498
Query: 534 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVR 593
+V+GLG G LP+F+H+ P I AVE+D +ML +A +FGF+Q +KVHI DG+ F+
Sbjct: 499 LVVGLGGGSLPLFIHDHFPKSCIHAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDFIT 558
Query: 594 EMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD 653
+ A D+++ DVDS D + GM+CP
Sbjct: 559 RLAEEEA---------------------------RPHYDVIMFDVDSKDPTLGMSCPPPA 591
Query: 654 FVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLF 713
FV FL VK L+ +G+FI+NLV R KD V++ +K VF L+ ++E +VN +LF
Sbjct: 592 FVAQLFLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILF 651
Query: 714 GLSSESC 720
C
Sbjct: 652 CQLHSEC 658
|
Bos taurus (taxid: 9913) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8N6R0|MET13_HUMAN Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (781), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 229/717 (31%), Positives = 348/717 (48%), Gaps = 102/717 (14%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------------GG 131
E LYD G+ I N+D S+VVI M N R M + MDMT M+ G
Sbjct: 64 EQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 132 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 188
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 189 HAIP----QKSSSEP--SLQTFMVVADK--ENSSVVLQVTSSFDHSSLDCNKNQAFGIHE 240
H + Q +EP SL F + K LQ+ F+ + + K E
Sbjct: 184 HQVANSQDQVLEAEPQFSLPVFAFIMTKFRPVPGSALQI---FELCAQEQRKPVRLESAE 240
Query: 241 ALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAV- 299
L Q R++Y+ QL K + ++S +L G G+ ++ V
Sbjct: 241 RLAEAVQERQQYAWLCS--------QLRRKARLGSVS----LDLCDGDTGEPRYTLHVVD 288
Query: 300 ---LLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSH 356
+ +R+N + +FI+P+ R EWLF +EG+ + S+ RLI V L
Sbjct: 289 SPTVKPSRDN------HFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQ 342
Query: 357 ASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVED 416
SMD IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED
Sbjct: 343 QYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIED 402
Query: 417 LVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSS 476
+ + D + FRRL+F + +VQSEA L++D S + +K
Sbjct: 403 V--QGDDKRY----------FRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRKKQRP 450
Query: 477 SKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVI 536
+ ++ + + YL +H +I+G L+ + + + +V+
Sbjct: 451 ADAE-------DLPAAPGQSIDKSYLCCEHHKAMIAGLALLRN---PELLLEIPLALLVV 500
Query: 537 GLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 596
GLG G LP+F+H+ P I+AVE+D +ML +A +FGF+Q +KVHI DG+ ++
Sbjct: 501 GLGGGSLPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYI---- 556
Query: 597 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 656
S+ G E R C D+++ DVDS D + GM+CP FVE
Sbjct: 557 -------ASLAGGGE-----ARPC----------YDVIMFDVDSKDPTLGMSCPPPAFVE 594
Query: 657 GSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLF 713
SFL VK L+ +G+FI+NLV R KD V++ +K VF L+ ++E +VN +LF
Sbjct: 595 QSFLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILF 651
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q91YR5|MET13_MOUSE Methyltransferase-like protein 13 OS=Mus musculus GN=Mettl13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (768), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 225/722 (31%), Positives = 349/722 (48%), Gaps = 113/722 (15%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L + L I P ++LV GCGNS LS
Sbjct: 10 EFGSADYWEKFFQQRG-KTAFEWYGTYLELCEVLHKYI-----KPKEKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------------GG 131
E LYD G+ I N+D S+VVI M RN R M + MDMT ++ G
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNGSRRPHMSFLKMDMTQLEFPDATFQVVLDKGT 123
Query: 132 LDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 188
LDA++ E E+ + ++ L+EV R+L+ GG+++C++LA++H+L F R GW +
Sbjct: 124 LDAVLTDEEEVTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRA 183
Query: 189 HAIP----QKSSSEP--SLQTFMVVADKENS--SVVLQVTSSFDHSSLDCNKNQAFGIHE 240
H + + S +EP SL F V K LQ+ C + Q +
Sbjct: 184 HQVASSQDRVSEAEPRFSLPVFAFVMTKFRPVPGSALQIFEL-------CTQEQGKPVR- 235
Query: 241 ALESENQ-----TRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFS 295
LES +Q R+Y Y+ QL K + ++S +L G G+ ++
Sbjct: 236 -LESADQLAEAVRERQY-------YAWLCSQLRRKAGLGSVS----LDLCSGDTGEPRYT 283
Query: 296 YRAV----LLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVL 351
V + +R+N + +FI+P+ R EWLF EEG+ + S+ RL+ V
Sbjct: 284 LHVVDNPAVKPSRDN------HFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLVTVA 337
Query: 352 LDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGP 411
L A M+ IQ +LS V +LAP Q+PF+ G I R V HQ S+L+G
Sbjct: 338 LHRGQRYAGMESIQAELSARVMELAPAGLPPQQQVPFLSVGGDIGVRTVQHQDHSALSGD 397
Query: 412 IIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERK 471
++ED+ E+ W FRRL+F + +VQSEA L++D +SHR + ++
Sbjct: 398 YVIEDVQGEDR-------W-----YFRRLIFLSNRNVVQSEARLLKD-TSHRAQKKRKKD 444
Query: 472 KASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSV 531
+ + S ++ YL +H +++G L+ + + +
Sbjct: 445 RKKQRPADTSEDFPPAPGQSIDK-----SYLCCEHHKAMVAGLALLRN---PELLLETPL 496
Query: 532 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591
+V+GLG G LP+F+H+ P I+AVE+D TML +A +FGF+Q +KVHI DG+ +
Sbjct: 497 TLLVVGLGGGSLPLFVHDHFPKSRIDAVEIDPTMLEVATQWFGFSQSDRMKVHIADGLDY 556
Query: 592 VREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA 651
+ + + D+++ DVDS D + GM+CP
Sbjct: 557 ITSLAGEAP----------------------------PHYDVIMFDVDSKDPTLGMSCPP 588
Query: 652 ADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLV 711
FV+ FL VK L G+FI+NLV R KD V++ +K F L+ ++E +VN +
Sbjct: 589 PAFVDQVFLQKVKSILCHDGVFILNLVCRDVRLKDSVLAGLKAAFPLLYVRRIEGEVNEI 648
Query: 712 LF 713
LF
Sbjct: 649 LF 650
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A5WVX1|MET13_DANRE Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (715), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 218/737 (29%), Positives = 354/737 (48%), Gaps = 97/737 (13%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F+S + W++FF RG +FEWY ++ L L I P ++LV GC
Sbjct: 4 LPRTAEEFSSADYWERFFRKRG-EKAFEWYGDYNSLCGVLHKYI-----KPRDKVLVVGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--------- 128
GNS LSE LYD G+ +TN+D S+ V+S M +RN R D+ ++ +D T
Sbjct: 58 GNSELSEQLYDVGYRQLTNIDISETVVSHMNQRNAERRPDLSFQQLDATQTGFESGSFQV 117
Query: 129 ---QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWK 185
+G LDA+ E G L + L+EV R+L GG++VC+TLA+ HV+ L F GW
Sbjct: 118 TLDKGTLDAMASEEDG-ALAGRMLAEVGRVLAVGGRYVCITLAQEHVIKLAVEHFVKGWA 176
Query: 186 MSVHAIP----QKSSSEPSLQTFMVVADKENSS---VVLQVTSSFDHSSLDCNKNQAFGI 238
+ VH + ++S S +L F++V K + VL++ D +
Sbjct: 177 VRVHCLTGQQNEESDSSFALPVFVLVCTKFRQAPPFAVLELCQGEDGAP------ARLAS 230
Query: 239 HEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRA 298
E L S + R+ Y+ +L+ L+ G + +P G + + +
Sbjct: 231 VEELLSAVKERQAYNL---MLHKLKG------GTDSSSTPSLTLCHAASGRPRYTLTIQD 281
Query: 299 VLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHAS 358
A+ P + +FIVP+ R +WL+ S EG+ + S+K RL++V +
Sbjct: 282 GPPSAKT---PRSNHFAIFIVPQGRESDWLYGSAEGRAQLASSAKFRRLVIVAMHRDQEY 338
Query: 359 ASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLV 418
M +Q +LSP+V +LAP Q+PF+ G + R V+ + S+LTG VED+
Sbjct: 339 EDMQAVQSELSPVVMELAPPGMPANQQVPFLSVGGDLGWREVIGRGLSALTGEYSVEDVR 398
Query: 419 YENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSK 478
E+ +RRL+F LVQSE+ L ++ + +KKA +
Sbjct: 399 GED------------GYLYRRLIFMNNSQLVQSESRLQSAAAASSASKKKNKKKAKQPAS 446
Query: 479 SKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGL 538
+ G + RS D G+L ++H +++G ++ ++++ + + V +++GL
Sbjct: 447 T---GAKDRSVD--------RGFLCCTHHEVMVAGLAMLG--MDAINNKDQPVSVLLVGL 493
Query: 539 GAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSS 598
G G LP F+ + +P +E VELD +L++A+ +FGF D LKV + DG+ + ++S
Sbjct: 494 GGGGLPQFVRDFVPCARVEVVELDPVVLDVAQTWFGFQIDDRLKVTLGDGLDHITTLESE 553
Query: 599 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 658
D+++ DVDS D++ GM+CP FVE S
Sbjct: 554 G----------------------------ERYFDVIMFDVDSKDTTLGMSCPPPAFVETS 585
Query: 659 FLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 718
L V LS +GLF++NLV R A + V+ R+ VF +F +E +VN VL S
Sbjct: 586 LLKKVYSLLSPRGLFMLNLVCRDSALRKSVLDRVHSVFPCVFSRGIEGEVNEVLLCCRSS 645
Query: 719 SCIKDNSFPEAAVQLGK 735
K ++ P+ Q K
Sbjct: 646 GEHKPHTVPQTLQQTAK 662
|
Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q29LW1|MTE13_DROPS Methyltransferase-like protein 13 OS=Drosophila pseudoobscura pseudoobscura GN=GA15401 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 210/726 (28%), Positives = 320/726 (44%), Gaps = 126/726 (17%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F + W++FF RG +FEWY E+ L D + I P +IL+ GC
Sbjct: 4 LPKTREEFAQTDYWNEFFKKRG-EKAFEWYGEYLDLCDHIHKYI-----KPVDKILMLGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--------- 128
GNS+LS +YD+ + ITN+D S V + ML +N R R DM++ MD T+M
Sbjct: 58 GNSKLSMDMYDSEYRDITNIDISPVAVKKMLEQNARTRPDMKFLQMDATAMTFPDESFSV 117
Query: 129 ---QGGLDALM---EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL---FPK 179
+G LDAL PE + N Y E+ R +++GG++ C++L + H+L L P+
Sbjct: 118 ALDKGTLDALFVDDAPETKAVVEN-YFKEILRTMRNGGRYFCVSLLQEHILNFLVEFLPR 176
Query: 180 ----FRFGWKMSVHAIPQKSSSEPSLQ--TFMVVADKENSSVVLQVTSSFDHSSLDCNKN 233
R + V ++ +++ +++ F+V+A K S + L +K
Sbjct: 177 HNCMLRIVHCLGVEQANKEKNADDAMKMPVFVVIATKFKS-----LPMPILEFGLGNDKM 231
Query: 234 QAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGC-RFELILGGEGDF 292
Q F E S S+ + S++ L G ++ G L L +
Sbjct: 232 QRFT-------------ESSELSNAVRSVQKAALVFNGLARSSIAGHDEVTLDLYRPSEN 278
Query: 293 CFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLL 352
Y +LD G Y FIVP+ R EWLF + G+ + S+K RL +V L
Sbjct: 279 TPRYSIYILDQAAARGLNKY--AAFIVPQGREIEWLFGTPSGRKKLQASAKFQRLAVVTL 336
Query: 353 DTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPI 412
+++E+Q +L V LAP QIP++ G + R + S ++G
Sbjct: 337 HRDQVYNTLEEVQAELGDTVFSLAP--HGHIKQIPYLSLGSDVGKRETLISGFSKISGEF 394
Query: 413 IVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKK 472
+E++ + RRL+F Q +VQSEAL V+T + K
Sbjct: 395 RIEEV-------------EAGGKTLRRLIFLSNQFVVQSEAL-----------VKTIKIK 430
Query: 473 ASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVK 532
K GYLA +H+ + G L ++ V K V
Sbjct: 431 GKKERKKID-----------------FGYLACQHHLYMSVGVQLATTLQNPKKDVQKDV- 472
Query: 533 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFV 592
+VIGLG G L FLH +P I AVE+D ML +AE YF QDK V I DG+ FV
Sbjct: 473 -LVIGLGGGGLCSFLHAALPQSRITAVEIDPIMLEVAEQYFELKQDKRFHVVIDDGLAFV 531
Query: 593 REMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA 652
C + D ++ DVDS D S GM+CP
Sbjct: 532 E-----------------------------RCRNEDIHFDAVLFDVDSKDLSLGMSCPPQ 562
Query: 653 DFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVL 712
F+ LL +K+ + +GLF++NLV R + K I+ ++ VF + +LEED+N V+
Sbjct: 563 GFLAHDVLLHIKEIIGPKGLFMLNLVCRDETLKTEAIANLQKVFPAVCSYKLEEDINEVV 622
Query: 713 FGLSSE 718
+ + E
Sbjct: 623 YCANDE 628
|
Drosophila pseudoobscura pseudoobscura (taxid: 46245) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9VIK9|MET13_DROME Methyltransferase-like protein 13 OS=Drosophila melanogaster GN=CG2614 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (583), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 203/728 (27%), Positives = 324/728 (44%), Gaps = 130/728 (17%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F + W++FF RG +FEWY E+ +L D + I P +IL+ GC
Sbjct: 4 LPKTREEFAQTDYWNEFFKKRG-EKAFEWYGEYLELCDQIHKYI-----KPADRILMLGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--------- 128
GNS+LS +YD GF ITN+D S + + ML N + R +M++ MD T+M
Sbjct: 58 GNSKLSMDMYDTGFRDITNIDISPIAVKKMLELNAKSRPEMKFLQMDATAMTFPDESFSV 117
Query: 129 ---QGGLDALM---EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLF---PK 179
+G LDAL EPE + N Y E+ R +++GG++V ++L + H+L L PK
Sbjct: 118 SLDKGTLDALFADDEPETRAVVEN-YFKEILRTMRNGGRYVGISLLQEHILNFLLDFLPK 176
Query: 180 FRFGWKMSVHAIPQKSSSEP-------SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNK 232
++ VH + + +++ +L F+VVA K S + + F + +K
Sbjct: 177 HNCMLRI-VHCLGVEQANKEKNADDALTLPVFVVVATKFKSLPMPVLEFGFGN-----DK 230
Query: 233 NQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMK-NLSPGCRFELILGGEGD 291
Q F L S + S++ L G + N++ + L +
Sbjct: 231 MQRFTTVSELNSA-------------VSSVQKAALVCNGLARSNIAGHNEVIMDLHRPSE 277
Query: 292 FCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVL 351
Y +LD G Y FIVP+ R EW+FS+ G+ + +S+ RL +V
Sbjct: 278 QTPRYTIHILDKPPARGLGKY--AAFIVPQGREVEWIFSTPAGRKKLQDSANFQRLAVVT 335
Query: 352 LDTSHASASMDEIQKDLSPLVKQLAP-GKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTG 410
L +++DE++++L+ +K L+P G DQ IP++ G + R + S ++G
Sbjct: 336 LHRDQVYSTLDEVKQELADSIKNLSPAGLTDQ---IPYLSLGSDVGKRETLICGFSKISG 392
Query: 411 PIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETER 470
+E++ + RRL+F Q +VQSEAL V+T +
Sbjct: 393 DFRIEEV-------------EANGKTLRRLIFLSNQFVVQSEAL-----------VKTVK 428
Query: 471 KKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKS 530
K K GYLA +H+ + G L ++ V K
Sbjct: 429 IKGKKDRKKID-----------------FGYLACQHHLYMSVGVQLATTVQHPKRDVEKD 471
Query: 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 590
V V +G G FLH +P I AVE+D ML +AE YF QDK V I DG+
Sbjct: 472 VLVVGLGGGGLC--SFLHAALPQARITAVEIDPIMLEVAEQYFELKQDKRFHVVIDDGLD 529
Query: 591 FVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP 650
FV C + D ++ DVDS D S GM+CP
Sbjct: 530 FVE-----------------------------RCRNEDIHFDAVLFDVDSKDLSLGMSCP 560
Query: 651 AADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNL 710
F+ L +K+ + +GLF++NLV R ++ + ++ + VF + +LEED+N
Sbjct: 561 PQSFLATKILQHIKEIIGPKGLFMLNLVCRDESLRTEALNNLHKVFPAVCSYKLEEDINE 620
Query: 711 VLFGLSSE 718
+++ + E
Sbjct: 621 IIYCANDE 628
|
Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NTR1|MET13_XENLA Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 215/445 (48%), Gaps = 75/445 (16%)
Query: 315 GVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMDEIQKDLSPLVKQ 374
+FI+P R EWLF SE+G+ + S RLI+V L M IQ +LS V +
Sbjct: 299 AIFIIPHGRETEWLFGSEQGRKQLAGSVGFNRLIIVALHRDQQYTDMKAIQSELSAKVLE 358
Query: 375 LAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSED 434
LAP QIPF+ AG+ I R + H+ S +G +VED+ + +
Sbjct: 359 LAPPGLPDNQQIPFLSAGEDIGSRTIQHRGKSEFSGEYVVEDVRGDG------------N 406
Query: 435 LKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSKRKGTQRRSDDSGNQ 494
+RRL+F Q +VQSEA L+ + ++KK K + T R D S
Sbjct: 407 SSYRRLIFLSNQNVVQSEARLLPISTHIGQKKRKDKKKQQKPVKDLEQPTITRIDKS--- 463
Query: 495 LKVYHGYLASSYHMGIISGFTLISS---YLESVASVGKSVKAVVIGLGAGLLPMFLHECM 551
YL +H +ISG L+ + E ASV +VIGLG G L +F+H+
Sbjct: 464 ------YLCCEHHKAMISGLALLPNPGLLPECQASV------LVIGLGGGSLSLFIHDYF 511
Query: 552 PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 611
P +E VE+D ++L++A ++F F QD+ +KVH+ DG+ VH N
Sbjct: 512 PGSRVEVVEIDPSVLDVASNWFNFCQDERMKVHLADGL-----------------VHINS 554
Query: 612 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG 671
+ ++N +C D+++ DVDS D S GM+CP FVE FL V + L+ G
Sbjct: 555 L-ADNGEAC----------YDVIMFDVDSKDPSVGMSCPPPAFVEKMFLQNVHNILNANG 603
Query: 672 LFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSESCIKDNSFPEAAV 731
+FI+NLV R + V++ + VF ++ +++E+VN +LF C ++
Sbjct: 604 VFILNLVCRDTDLRLKVLNVLHEVFPLIYAQKIDEEVNEILF------CRPNSE------ 651
Query: 732 QLGKLVKFQHLEISQSIMDAAKKIR 756
KF LE+ +S + KK+R
Sbjct: 652 -----RKFSSLELKESAKNLEKKLR 671
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q10711|ECE2_BOVIN Endothelin-converting enzyme 2 OS=Bos taurus GN=ECE2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 12 SSSATDLLQTLGDFTSKENWDKFFTIRGIGDS--FEWYAEWPQLRDPLISLIGAPTSSPP 69
S+ +L + + + WD+ + +G DS +EW+ ++ RD L P P
Sbjct: 7 SAQVPELPEKNCGYREVQYWDQRY--QGAADSAPYEWFGDFSCFRDLL-----EPELRPL 59
Query: 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM- 128
+ILV GCGNS LS L+ GF +T+VD+S VV++ M R + +RW MD+ ++
Sbjct: 60 DRILVLGCGNSALSYELFLGGFPDVTSVDYSSVVVAAMRARYAHVPT-LRWETMDVRALG 118
Query: 129 --QGGLDALME 137
G D ++E
Sbjct: 119 FPSGSFDVVLE 129
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|Q80Z60|ECE2_MOUSE Endothelin-converting enzyme 2 OS=Mus musculus GN=Ece2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
WD+ + +EW+ ++ R L P P +ILV GCGNS LS L+ G
Sbjct: 26 WDQRYKDAADSGPYEWFGDFASFRALL-----EPELCPEDRILVLGCGNSALSYELFLGG 80
Query: 91 FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALME 137
F +T+VD+S VV++ M R S +RW MD+ ++ G D ++E
Sbjct: 81 FPNVTSVDYSPVVVAAMQVRYAHVPS-LRWETMDVRALDFPSGSFDVVLE 129
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|O60344|ECE2_HUMAN Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 22/125 (17%)
Query: 29 ENWDKFFTIRGIGDS--FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL 86
E WD+ + +G DS ++W+ ++ R L P P +ILV GCGNS LS L
Sbjct: 24 EYWDQRY--QGAADSAPYDWFGDFSSFRALL-----EPELRPEDRILVLGCGNSALSYEL 76
Query: 87 YDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM------------QGGLDA 134
+ GF +T+VD+S VV++ M R+ +RW MD+ + +G LDA
Sbjct: 77 FLGGFPNVTSVDYSSVVVAAMQARHAH-VPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 135
Query: 135 LMEPE 139
L+ E
Sbjct: 136 LLAGE 140
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 759 | ||||||
| 224060357 | 779 | predicted protein [Populus trichocarpa] | 0.993 | 0.967 | 0.701 | 0.0 | |
| 359477926 | 782 | PREDICTED: methyltransferase-like protei | 0.985 | 0.956 | 0.683 | 0.0 | |
| 255554026 | 761 | S-adenosylmethionine-dependent methyltra | 0.985 | 0.982 | 0.689 | 0.0 | |
| 356512463 | 761 | PREDICTED: methyltransferase-like protei | 0.978 | 0.976 | 0.651 | 0.0 | |
| 356512461 | 762 | PREDICTED: methyltransferase-like protei | 0.976 | 0.972 | 0.65 | 0.0 | |
| 449432402 | 752 | PREDICTED: methyltransferase-like protei | 0.972 | 0.981 | 0.669 | 0.0 | |
| 34148076 | 763 | putative spermine/spermidine synthase [G | 0.980 | 0.975 | 0.642 | 0.0 | |
| 356525225 | 763 | PREDICTED: methyltransferase-like protei | 0.976 | 0.971 | 0.642 | 0.0 | |
| 298205206 | 748 | unnamed protein product [Vitis vinifera] | 0.924 | 0.938 | 0.640 | 0.0 | |
| 297826625 | 762 | hypothetical protein ARALYDRAFT_902209 [ | 0.974 | 0.971 | 0.624 | 0.0 |
| >gi|224060357|ref|XP_002300159.1| predicted protein [Populus trichocarpa] gi|222847417|gb|EEE84964.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/784 (70%), Positives = 630/784 (80%), Gaps = 30/784 (3%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGKK K SS +S +LL TLGDFTSKENWDKFFTIRG DSFEWYAEW +L PL+SL
Sbjct: 1 MGKKDKQ--SSKASTEELLTTLGDFTSKENWDKFFTIRGTDDSFEWYAEWTELHHPLLSL 58
Query: 61 IG------APTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD 114
+ + +SSP +ILVPGCGNS+LSE+LYDAGF ITN+DFSKVVISDMLRRNVRD
Sbjct: 59 LAGNDENHSSSSSPLLKILVPGCGNSKLSENLYDAGFKEITNIDFSKVVISDMLRRNVRD 118
Query: 115 RSDMRWRVMDMTSMQ------------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 162
R MRWRVMDMT MQ GGLDALMEPELG KLGNQYLSEVKR+L GKF
Sbjct: 119 RPGMRWRVMDMTQMQLADESFDVVLDKGGLDALMEPELGPKLGNQYLSEVKRVLNFEGKF 178
Query: 163 VCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSS 222
+CLTLAESHVL LLF KFRFGWKMSV AIPQK SS+P L+TFMVVA+KENSS + +T+
Sbjct: 179 ICLTLAESHVLALLFSKFRFGWKMSVQAIPQKPSSKPDLRTFMVVAEKENSSALHFITAL 238
Query: 223 FDHSSLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRF 282
FDHSSLDC NQA G+HEALE+ENQ R+EYS G DILYSLEDL +GAKGD+ LS G RF
Sbjct: 239 FDHSSLDCIGNQAIGLHEALENENQIRKEYSIGPDILYSLEDLLIGAKGDLSKLSLGRRF 298
Query: 283 ELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESS 342
+L LGG GD FSY+A++LDA+E+S F Y+CGVFIVPKTRAHEWLFSSEEGQWLVVESS
Sbjct: 299 QLTLGGNGDSRFSYKAIVLDAKESSSQFTYHCGVFIVPKTRAHEWLFSSEEGQWLVVESS 358
Query: 343 KAARLIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVH 402
KAARLIM+++D+SH +ASMD+IQKDLSPLVKQLAPGKDD AQIPFMMAGDGIK R VH
Sbjct: 359 KAARLIMIIMDSSHNNASMDDIQKDLSPLVKQLAPGKDDNSAQIPFMMAGDGIKERKTVH 418
Query: 403 QATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSH 462
+ TSSLTG IIVED+VYENV + SR +PS DL FRRLVFQR +GLVQSEALL RD SSH
Sbjct: 419 KVTSSLTGSIIVEDVVYENVADDVSRPFPSSDLIFRRLVFQRAEGLVQSEALLTRDESSH 478
Query: 463 RTDVETERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLE 522
+ E KK +SSSKSK+KG+Q+R+D S LKVYH Y+ASSYHMGI+SGFTL+SSYLE
Sbjct: 479 KI---VEEKKKTSSSKSKKKGSQKRNDASSKILKVYHDYMASSYHMGIVSGFTLMSSYLE 535
Query: 523 SVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK 582
SV S GK+V AV+IGLGAGLLPMFLH CMP + IE VELD +L+LA DYFGF +D+ LK
Sbjct: 536 SVESTGKTVNAVIIGLGAGLLPMFLHGCMPSLQIEVVELDAVVLSLARDYFGFAEDERLK 595
Query: 583 VHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSC---NGNCTASNA----RVDILI 635
VHI DGI+FVRE+K+ + D + +HG E S +T+ +G+ + + RVDILI
Sbjct: 596 VHIADGIRFVREVKNFAVADGLPAIHGIEDASGSTKPSPDESGSVSYTEGRGRPRVDILI 655
Query: 636 IDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMV 695
IDVDS DSSSGM CPAADFVE SFLLTVKD LSEQGLFIVNLVSRS A KD +ISRMK V
Sbjct: 656 IDVDSSDSSSGMACPAADFVEESFLLTVKDTLSEQGLFIVNLVSRSPAVKDTIISRMKAV 715
Query: 696 FNHLFCLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKI 755
FNHLF LQLEED+N+VLFGL SE C+K++ FPEAA QL KL+KF+H EI QSI+D+ KKI
Sbjct: 716 FNHLFSLQLEEDINMVLFGLCSEVCLKEDCFPEAACQLDKLLKFKHQEIGQSIIDSTKKI 775
Query: 756 RCLK 759
R LK
Sbjct: 776 RRLK 779
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477926|ref|XP_002263181.2| PREDICTED: methyltransferase-like protein 13-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/793 (68%), Positives = 632/793 (79%), Gaps = 45/793 (5%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
M KKK+++ +LLQTLGDFTSKENWDKFFTIRG DSFEWYAEWPQL+DPL+S
Sbjct: 1 MSKKKQSEE-------ELLQTLGDFTSKENWDKFFTIRGSDDSFEWYAEWPQLKDPLLSH 53
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ + PP QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR R DMRW
Sbjct: 54 LSSTPPPPPLQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRSRPDMRW 113
Query: 121 RVMDMTSMQ------------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168
RVMD+TSMQ GGLDALMEPELG KLG YL+EVKR+LKSGGKF+ LTLA
Sbjct: 114 RVMDITSMQFPDGSFDAILDKGGLDALMEPELGPKLGKMYLTEVKRVLKSGGKFIGLTLA 173
Query: 169 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 228
ESHVLGLLF KFRFGWKMS+H + QK S++PSL TFMVVA+KE+S+V+ Q+T+SF SSL
Sbjct: 174 ESHVLGLLFSKFRFGWKMSIHVVSQKPSNKPSLLTFMVVAEKESSTVLHQITTSFARSSL 233
Query: 229 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 288
D N NQA G++EA+E+EN+ RREYS+GSD++YSLEDLQLGAKGD+ LS G RF+L LG
Sbjct: 234 DLNGNQARGLYEAIENENRIRREYSNGSDLIYSLEDLQLGAKGDLLELSQGRRFQLTLGE 293
Query: 289 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 348
FSYRAV+LDAR+ + PF+Y+CGVF+VPKTRAHEWLFSSEEGQW+VVESSKAARLI
Sbjct: 294 YEGSRFSYRAVVLDARQMTEPFLYHCGVFLVPKTRAHEWLFSSEEGQWMVVESSKAARLI 353
Query: 349 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 408
MVLLDTSH +ASMD+IQKDLSPLVK+LAP ++ GAQIPFM+AGDGIK R +VHQ TS+L
Sbjct: 354 MVLLDTSHTNASMDDIQKDLSPLVKRLAPANNNTGAQIPFMIAGDGIKQRKIVHQVTSTL 413
Query: 409 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 468
TG I VED+VYENVD + S + PS+ L FRRL FQR +GLVQSEALL R+G + + ET
Sbjct: 414 TGLITVEDVVYENVDGKVSHLVPSKALLFRRLTFQRAEGLVQSEALLTREGGTQKIVSET 473
Query: 469 ERKKASSSSKSKRKGTQRRSDD-----SGNQLKVYHGYLASSYHMGIISGFTLISSYLES 523
ERKK+ SSSKS++KG Q++ D S N LKVYH YLASSYHMGIISGF LISSYLES
Sbjct: 474 ERKKSISSSKSRKKGNQKKIDSLAIHGSSNNLKVYHNYLASSYHMGIISGFMLISSYLES 533
Query: 524 VASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 583
VAS G++VKAVVIGLGAGLLPMFLH CMPF+ IE VELD +LNLA +YFGF +DK LKV
Sbjct: 534 VASTGRTVKAVVIGLGAGLLPMFLHGCMPFLDIEVVELDPVILNLARNYFGFCEDKHLKV 593
Query: 584 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTR--SCNGNCTASNA------RVDILI 635
HI DGI+FVR + A D +S H N + S NG+CTAS+A + DILI
Sbjct: 594 HIADGIQFVRGV----AADGVSGKHVNNDAQCDAECPSSNGSCTASHAERKVISKFDILI 649
Query: 636 IDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMV 695
IDVDS DSSSGMTCPAADFV+ SFLLTVKD+LS+QGLF+VNLVSRS+A K+MV+SRMK V
Sbjct: 650 IDVDSSDSSSGMTCPAADFVDESFLLTVKDSLSDQGLFVVNLVSRSRAIKNMVVSRMKAV 709
Query: 696 FNHLFCLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLV---------KFQHLEISQ 746
F+HLFCLQLEEDVN VLF L +E CIK+ F EAAV+L KL+ K + E+SQ
Sbjct: 710 FSHLFCLQLEEDVNEVLFALRTEDCIKEEQFGEAAVELEKLLSWDRNDLPEKSKPPEMSQ 769
Query: 747 SIMDAAKKIRCLK 759
I D+ +KI+CLK
Sbjct: 770 IIRDSTEKIKCLK 782
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554026|ref|XP_002518053.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223542649|gb|EEF44186.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1017 bits (2629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/772 (68%), Positives = 631/772 (81%), Gaps = 24/772 (3%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGK+ K QS SS+ DLL+TLGDFTSKENWDKFFTIRG DSFEWYAEWPQLR PL+SL
Sbjct: 1 MGKRDKQQSQPSSN--DLLETLGDFTSKENWDKFFTIRGADDSFEWYAEWPQLRQPLLSL 58
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
S P QIL+PGCGNSRLSE+LYD GF ITN+DFSKVVISDMLRRNVRDR MRW
Sbjct: 59 FANDDS--PVQILMPGCGNSRLSENLYDLGFKDITNIDFSKVVISDMLRRNVRDRPGMRW 116
Query: 121 RVMDMTSMQ------------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168
RVMDMT MQ GGLDALMEPELG KLG +YLSEV+R+LK GGKF+CLTLA
Sbjct: 117 RVMDMTDMQFADETFDVVLDKGGLDALMEPELGPKLGTKYLSEVQRVLKFGGKFICLTLA 176
Query: 169 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 228
ESHVLGLLF KFRFGWK+++HAIP +S+PSL+TFMV A+K N S + + SSFDH ++
Sbjct: 177 ESHVLGLLFSKFRFGWKLNIHAIPWNLASKPSLRTFMVAAEKGNLSDLHLIMSSFDHYTV 236
Query: 229 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 288
C+ NQA +HEALE+EN+ R+EYS GSDILYSLEDL+LGAKGD+ LS G R +L LGG
Sbjct: 237 GCSGNQAASLHEALENENRIRKEYSSGSDILYSLEDLRLGAKGDLTKLSQGRRIQLTLGG 296
Query: 289 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 348
+G F+Y+AVLLDA+ENS PF ++CG+FIVPKTRAHEWLF SEEGQW+VVESS+AARLI
Sbjct: 297 QGGSRFTYKAVLLDAKENSAPFSFHCGIFIVPKTRAHEWLFCSEEGQWMVVESSQAARLI 356
Query: 349 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 408
MV+LD+SH S++MD+IQKDLSPLVKQLAPG+ D GAQIPFMMAGDGIK RNVVH+ TSSL
Sbjct: 357 MVILDSSHTSSTMDDIQKDLSPLVKQLAPGEGDNGAQIPFMMAGDGIKQRNVVHEVTSSL 416
Query: 409 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 468
TG IIVED+VYE+VD + S + PS+DL FRRLVFQRT+GLVQSE LL RD ++
Sbjct: 417 TGSIIVEDVVYEDVDDDVSCLLPSKDLIFRRLVFQRTEGLVQSEGLLKRDEFCNKIS-GI 475
Query: 469 ERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVG 528
++KK +SSSKSK++G ++++D+S NQLKVYH YLASSYH GIISGF LISSYLESV S G
Sbjct: 476 DKKKKTSSSKSKKRGNKKQNDESSNQLKVYHDYLASSYHTGIISGFMLISSYLESVESAG 535
Query: 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG 588
+V VV+GLGAGLLPMFLH C+PF+ +E VELD +L LA+DYFGF +DK LKVHITDG
Sbjct: 536 NTVNTVVVGLGAGLLPMFLHGCLPFLHLEVVELDPVVLALAKDYFGFIEDKHLKVHITDG 595
Query: 589 IKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNAR-VDILIIDVDSPDSSSGM 647
I+FVRE+K+ + D NE+ S +++ C + S++ +D+LIIDVDS DSSSGM
Sbjct: 596 IRFVREVKNYAPADR------NEVASGSSKPCQNHAEGSSSPGIDVLIIDVDSSDSSSGM 649
Query: 648 TCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEED 707
TCPAADFVE SFLLTVKD+LSE+GLF+VNLVSRS A KDMVISRMK VF+HLF LQLEED
Sbjct: 650 TCPAADFVEESFLLTVKDSLSEKGLFVVNLVSRSSAIKDMVISRMKTVFSHLFSLQLEED 709
Query: 708 VNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 759
VN+VLFGL SESC+K++SFPEAA+QL KL+KF+H EI Q ++D KKI+CLK
Sbjct: 710 VNMVLFGLCSESCMKEDSFPEAALQLEKLLKFKHPEIGQKVIDTTKKIKCLK 761
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512463|ref|XP_003524938.1| PREDICTED: methyltransferase-like protein 13-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1002 bits (2590), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/777 (65%), Positives = 603/777 (77%), Gaps = 34/777 (4%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWDKFFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKGKKKGSPE----DILETLGDFTSKENWDKFFTLRG--DSFEWYAEWPNLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ T P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVISDMLRRNVRDR MRW
Sbjct: 55 L--KTVPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVISDMLRRNVRDRPLMRW 112
Query: 121 RVMDMTSMQ------------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168
R+MDMT+MQ GGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTLA
Sbjct: 113 RIMDMTAMQFEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTLA 172
Query: 169 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 228
ESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SSL
Sbjct: 173 ESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSSL 232
Query: 229 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 288
CN Q G+HEAL++ENQ R +YS GS++LYS+EDLQ ++ LS G R +L LGG
Sbjct: 233 HCNSKQVSGLHEALQNENQIREKYSSGSNLLYSVEDLQ----EELTKLSQGRRLQLTLGG 288
Query: 289 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 348
+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SS+AARLI
Sbjct: 289 QGYSTFSYRAVILDAEEQASPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSEAARLI 348
Query: 349 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 408
MV LD SH+ SM+EIQKDLSPLV QLAP +++ GA+IPFMMA +GIK RN++H+ TSSL
Sbjct: 349 MVYLDASHSDTSMEEIQKDLSPLVTQLAPAENENGAKIPFMMASEGIKERNIIHKVTSSL 408
Query: 409 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 468
TG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + S + ET
Sbjct: 409 TGSIIVEDVIYENVDSEVSCIFPSRELVFRRLVFERAANLVQSEALLKDEQSPTKLVSET 468
Query: 469 ERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVG 528
RKK ++SSKS++ G+QR S + +QL VYHGY+ASSYH GIISGFTLISSY+E+VAS G
Sbjct: 469 GRKKNNASSKSRKSGSQRHSIGASSQLTVYHGYVASSYHTGIISGFTLISSYMENVASSG 528
Query: 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG 588
K VKAV+IGLGAGLL MFLH C+PF+ IE VELD ++++A DYF F +DK LKVH+ DG
Sbjct: 529 KMVKAVIIGLGAGLLSMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKRLKVHVADG 588
Query: 589 IKFVREMKSSSATDEMSVVHGNEITSNNTRSC-NGNCTASNA-----RVDILIIDVDSPD 642
I+FVRE+ SS A +HG +NT S N + T S+A +VDI+I+DVDS D
Sbjct: 589 IQFVREIDSSGAPQ----IHGKSNDPSNTESALNASSTVSHAGVKVTKVDIIIVDVDSSD 644
Query: 643 SSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCL 702
SSG+TCPA DF++ SFL TVKD LSE GLF+VNLVSRSQA KDM +S+MK VF+HLFCL
Sbjct: 645 PSSGLTCPAPDFLDESFLETVKDKLSEDGLFVVNLVSRSQAIKDMALSKMKKVFSHLFCL 704
Query: 703 QLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 759
QL+EDVN V F L SESCI+D+ F EA+++L KL++F+H EI Q+I++A KKIR LK
Sbjct: 705 QLDEDVNEVHFALKSESCIEDSCFSEASLKLHKLLEFKHPEIGQNIINATKKIRHLK 761
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512461|ref|XP_003524937.1| PREDICTED: methyltransferase-like protein 13-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/780 (65%), Positives = 602/780 (77%), Gaps = 39/780 (5%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWDKFFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKGKKKGSPE----DILETLGDFTSKENWDKFFTLRG--DSFEWYAEWPNLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ T P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVISDMLRRNVRDR MRW
Sbjct: 55 L--KTVPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVISDMLRRNVRDRPLMRW 112
Query: 121 RVMDMTSMQ------------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168
R+MDMT+MQ GGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTLA
Sbjct: 113 RIMDMTAMQFEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTLA 172
Query: 169 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 228
ESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SSL
Sbjct: 173 ESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSSL 232
Query: 229 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 288
CN Q G+HEAL++ENQ R +YS GS++LYS+EDLQ ++ LS G R +L LGG
Sbjct: 233 HCNSKQVSGLHEALQNENQIREKYSSGSNLLYSVEDLQ----EELTKLSQGRRLQLTLGG 288
Query: 289 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 348
+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SS+AARLI
Sbjct: 289 QGYSTFSYRAVILDAEEQASPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSEAARLI 348
Query: 349 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 408
MV LD SH+ SM+EIQKDLSPLV QLAP +++ GA+IPFMMA +GIK RN++H+ TSSL
Sbjct: 349 MVYLDASHSDTSMEEIQKDLSPLVTQLAPAENENGAKIPFMMASEGIKERNIIHKVTSSL 408
Query: 409 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 468
TG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + S + ET
Sbjct: 409 TGSIIVEDVIYENVDSEVSCIFPSRELVFRRLVFERAANLVQSEALLKDEQSPTKLVSET 468
Query: 469 ERKKASSSSKSKRKGTQRRSDDSGNQ---LKVYHGYLASSYHMGIISGFTLISSYLESVA 525
RKK ++SSKS++ G+QR S GN L VYHGY+ASSYH GIISGFTLISSY+E+VA
Sbjct: 469 GRKKNNASSKSRKSGSQRHS--IGNYFPLLTVYHGYVASSYHTGIISGFTLISSYMENVA 526
Query: 526 SVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHI 585
S GK VKAV+IGLGAGLL MFLH C+PF+ IE VELD ++++A DYF F +DK LKVH+
Sbjct: 527 SSGKMVKAVIIGLGAGLLSMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKRLKVHV 586
Query: 586 TDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSC-NGNCTASNA-----RVDILIIDVD 639
DGI+FVRE+ SS A +HG +NT S N + T S+A +VDI+I+DVD
Sbjct: 587 ADGIQFVREIDSSGAPQ----IHGKSNDPSNTESALNASSTVSHAGVKVTKVDIIIVDVD 642
Query: 640 SPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHL 699
S D SSG+TCPA DF++ SFL TVKD LSE GLF+VNLVSRSQA KDM +S+MK VF+HL
Sbjct: 643 SSDPSSGLTCPAPDFLDESFLETVKDKLSEDGLFVVNLVSRSQAIKDMALSKMKKVFSHL 702
Query: 700 FCLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 759
FCLQL+EDVN V F L SESCI+D+ F EA+++L KL++F+H EI Q+I++A KKIR LK
Sbjct: 703 FCLQLDEDVNEVHFALKSESCIEDSCFSEASLKLHKLLEFKHPEIGQNIINATKKIRHLK 762
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432402|ref|XP_004133988.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus] gi|449517108|ref|XP_004165588.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/760 (66%), Positives = 595/760 (78%), Gaps = 22/760 (2%)
Query: 13 SSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQI 72
+ A ++LQTLGDFTSKENWD FFTIRG GD+FEWYAEWP+L+DPLIS + + SP PQI
Sbjct: 2 AKADNILQTLGDFTSKENWDNFFTIRGHGDAFEWYAEWPELKDPLISHLPTLSKSPSPQI 61
Query: 73 LVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--- 129
LVPGCGNS LSE LYDAGF ITN+DFSKV ISDMLRRNVR+R DMRWRVMDMT+MQ
Sbjct: 62 LVPGCGNSSLSEQLYDAGFRCITNIDFSKVAISDMLRRNVRERPDMRWRVMDMTNMQFTN 121
Query: 130 ---------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 180
GGLDALMEPE+G KLG+QYLSEVKR+LK GGKF+CLTLAESHVLGLLFPKF
Sbjct: 122 DTFDAVVDKGGLDALMEPEVGSKLGSQYLSEVKRVLKPGGKFICLTLAESHVLGLLFPKF 181
Query: 181 RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHE 240
RFGWKMS+H IP K S+PS +TFMVV +K+ S+ Q+ SS + SSLD +Q + +
Sbjct: 182 RFGWKMSIHVIPPKPPSKPSFRTFMVVVEKDESTAWHQIESSLNFSSLDSRGDQTRELVQ 241
Query: 241 ALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVL 300
+LE+EN+ R +YS G D+L+SLEDLQLGAKGD++ L G R + LGG+G FSYRAVL
Sbjct: 242 SLENENRIREKYSSGDDLLFSLEDLQLGAKGDLQKLHRGRRVQFTLGGQGTSIFSYRAVL 301
Query: 301 LDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASAS 360
LDARE+SGPF Y CGVFIVPKTRAHEWLFSSEEGQW+VVESSKAARLIMVLLD + + A+
Sbjct: 302 LDAREHSGPFSYECGVFIVPKTRAHEWLFSSEEGQWMVVESSKAARLIMVLLDETQSGAN 361
Query: 361 MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYE 420
MD IQKDLSPLVKQLAPG+DD G+QIPFMMA DGIK RN V Q TSSLTG I+VED+ YE
Sbjct: 362 MDAIQKDLSPLVKQLAPGEDDSGSQIPFMMASDGIKERNCVFQGTSSLTGSIVVEDVKYE 421
Query: 421 NVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSK 480
+V + SRI+PS DL FRRLVFQRT+ LVQSEALL R+ + + +RKK+ +SSKSK
Sbjct: 422 HVSGDASRIFPSGDLIFRRLVFQRTESLVQSEALLTRERVDDKVSGQMDRKKSHASSKSK 481
Query: 481 RKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGA 540
KG +R + +S +Q+K YHGYLASSYH GIISGF LIS YL SVAS GK V AVVIGLGA
Sbjct: 482 NKGKKRLNKESSDQMKAYHGYLASSYHSGIISGFMLISQYLGSVASAGKMVNAVVIGLGA 541
Query: 541 GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSA 600
GLLPMFL CM F+ IE VELD +LNLA DYF FT+D +LKVHI DGI+FVRE ++
Sbjct: 542 GLLPMFLRACMSFLHIEVVELDSMILNLARDYFDFTEDANLKVHIADGIQFVREFRNYGT 601
Query: 601 TDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFL 660
+G+ + +N S N +VDILIIDVD+ DSSSGMTCPAADFVE SFL
Sbjct: 602 -------NGSTVALDNGNS--SQVEQGNKKVDILIIDVDATDSSSGMTCPAADFVEESFL 652
Query: 661 LTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSESC 720
L VKDALSEQGLFI+NLV+RS +MV++RMK VFNHLF LQLEEDVN VLF L S+ C
Sbjct: 653 LAVKDALSEQGLFIINLVTRSPTVNNMVVTRMKGVFNHLFSLQLEEDVNEVLFALPSDLC 712
Query: 721 IK-DNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 759
IK D+ F EA++QL KL+ +HLE+ QSI+DA KIRCLK
Sbjct: 713 IKEDHLFNEASLQLEKLLNLKHLEMRQSIVDATTKIRCLK 752
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|34148076|gb|AAQ62585.1| putative spermine/spermidine synthase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 970 bits (2508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/778 (64%), Positives = 596/778 (76%), Gaps = 34/778 (4%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWD FFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKAKKKGSPE----DILETLGDFTSKENWDNFFTLRG--DSFEWYAEWPHLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVI DMLRRNVRDR MRW
Sbjct: 55 LKTIPLPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVIGDMLRRNVRDRPLMRW 114
Query: 121 RVMDMTSMQ------------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168
RVMDMT MQ GGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTLA
Sbjct: 115 RVMDMTVMQFEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTLA 174
Query: 169 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 228
ESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SSL
Sbjct: 175 ESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSSL 234
Query: 229 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 288
N Q G+HEAL++ENQ R +YS GSDILYS+EDLQ ++ LS G R +L LGG
Sbjct: 235 HSNSKQVSGLHEALQNENQIREKYSSGSDILYSVEDLQ----EELTKLSQGRRLQLTLGG 290
Query: 289 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 348
+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SSKAARLI
Sbjct: 291 QGYSTFSYRAVILDAEEQADPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSKAARLI 350
Query: 349 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 408
MV LD SH+ SM+EIQKDLSPLV QLAP ++ GA+IPFMMA +GIK RN++H+ TSSL
Sbjct: 351 MVYLDASHSDTSMEEIQKDLSPLVTQLAPAENGNGAKIPFMMASEGIKERNIIHKVTSSL 410
Query: 409 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 468
TG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + + ET
Sbjct: 411 TGSIIVEDVIYENVDSEVSCIFPSGELMFRRLVFERAANLVQSEALLKDEQLPTKLVSET 470
Query: 469 ERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVG 528
+KK ++SSKS++ G+ R S + +QL VYHGY+ASSYH GIISGF LISS++E+VAS G
Sbjct: 471 GKKKTNASSKSRKSGSWRDSVGASSQLTVYHGYVASSYHTGIISGFMLISSHMENVASSG 530
Query: 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG 588
K VKAV+IGLGAGLLPMFLH C+PF+ IE VELD ++++A DYF F +DK +KVHI DG
Sbjct: 531 KMVKAVIIGLGAGLLPMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKHVKVHIADG 590
Query: 589 IKFVREMKSSSATDEMSVVHG--NEITSNNTRSCNGNCTASNA-----RVDILIIDVDSP 641
I+FVRE+ SS A +HG N+ + +T + N + S+A +VDI+I+DVDS
Sbjct: 591 IQFVREIDSSGAAQ----IHGKSNDPSYTDT-ALNASSAVSHADVEVTKVDIIIVDVDSS 645
Query: 642 DSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFC 701
D SSG+TCPA DF++ SFL TVKD LSE GLF+VNLVSRSQA KDM +S+MK VF+HLFC
Sbjct: 646 DPSSGLTCPAPDFLDESFLETVKDRLSEDGLFVVNLVSRSQAIKDMALSKMKKVFSHLFC 705
Query: 702 LQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 759
LQL+EDVN V F L SESCI+D+ F EA+++L KL++F+H EI Q+I++A KKIR LK
Sbjct: 706 LQLDEDVNEVHFALKSESCIEDSCFSEASLKLDKLLEFKHPEIGQNIINATKKIRRLK 763
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525225|ref|XP_003531227.1| PREDICTED: methyltransferase-like protein 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/775 (64%), Positives = 594/775 (76%), Gaps = 34/775 (4%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWD FFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKAKKKGSPE----DILETLGDFTSKENWDNFFTLRG--DSFEWYAEWPHLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVI DMLRRNVRDR MRW
Sbjct: 55 LKTIPLPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVIGDMLRRNVRDRPLMRW 114
Query: 121 RVMDMTSMQ------------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168
RVMDMT MQ GGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTLA
Sbjct: 115 RVMDMTVMQFEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTLA 174
Query: 169 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 228
ESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SSL
Sbjct: 175 ESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSSL 234
Query: 229 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 288
N Q G+HEAL++ENQ R +YS GSDILYS+EDLQ ++ LS G R +L LGG
Sbjct: 235 HSNSKQVSGLHEALQNENQIREKYSSGSDILYSVEDLQ----EELTKLSQGRRLQLTLGG 290
Query: 289 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 348
+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SSKAARLI
Sbjct: 291 QGYSTFSYRAVILDAEEQADPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSKAARLI 350
Query: 349 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 408
MV LD SH+ SM+EIQKDLSPLV QLAP ++ GA+IPFMMA +GIK RN++H+ TSSL
Sbjct: 351 MVYLDASHSDTSMEEIQKDLSPLVTQLAPAENGNGAKIPFMMASEGIKERNIIHKVTSSL 410
Query: 409 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 468
TG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + + ET
Sbjct: 411 TGSIIVEDVIYENVDSEVSCIFPSGELMFRRLVFERAANLVQSEALLKDEQLPTKLVSET 470
Query: 469 ERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVG 528
+KK ++SSKS++ G+ R S + +QL VYHGY+ASSYH GIISGF LISS++E+VAS G
Sbjct: 471 GKKKNNASSKSRKSGSWRDSVGASSQLTVYHGYVASSYHTGIISGFMLISSHMENVASSG 530
Query: 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG 588
K VKAV+IGLGAGLLPMFLH C+PF+ IE VELD ++++A DYF F +DK +KVHI DG
Sbjct: 531 KMVKAVIIGLGAGLLPMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKHVKVHIADG 590
Query: 589 IKFVREMKSSSATDEMSVVHG--NEITSNNTRSCNGNCTASNA-----RVDILIIDVDSP 641
I+FVRE+ SS A +HG N+ + +T + N + S+A +VDI+I+DVDS
Sbjct: 591 IQFVREIDSSGAAQ----IHGKSNDPSYTDT-ALNASSAVSHADVEVTKVDIIIVDVDSS 645
Query: 642 DSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFC 701
D SSG+TCPA DF++ SFL TVKD LSE GLF+VNLVSRSQA KDM +S+MK VF+HLFC
Sbjct: 646 DPSSGLTCPAPDFLDESFLETVKDRLSEDGLFVVNLVSRSQAIKDMALSKMKKVFSHLFC 705
Query: 702 LQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIR 756
LQL+EDVN V F L SESCI+D+ F EA+++L KL++F+H EI Q+I++A KKIR
Sbjct: 706 LQLDEDVNEVHFALKSESCIEDSCFSEASLKLDKLLEFKHPEIGQNIINATKKIR 760
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205206|emb|CBI17265.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/805 (64%), Positives = 599/805 (74%), Gaps = 103/805 (12%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
M KKK+++ +LLQTLGDFTSKENWDKFFTIRG DSFEWYAEWPQL+DPL+S
Sbjct: 1 MSKKKQSEE-------ELLQTLGDFTSKENWDKFFTIRGSDDSFEWYAEWPQLKDPLLSH 53
Query: 61 IG--APTSSPPP----------QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 108
+ AP S P QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML
Sbjct: 54 LSSTAPPSDPASEPPQPPPPPLQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 113
Query: 109 RRNVRDRSDMRWRVMDMTSMQ------------GGLDALMEPELGHKLGNQYLSEVKRLL 156
RRNVR R DMRWRVMD+TSMQ GGLDALMEPELG KLG YL+EVKR+L
Sbjct: 114 RRNVRSRPDMRWRVMDITSMQFPDGSFDAILDKGGLDALMEPELGPKLGKMYLTEVKRVL 173
Query: 157 KSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVV 216
KSGGKF+ LTLAESHVLGLLF KFRFGWKMS+H + QK S++PSL TFMVVA+KE+S+V+
Sbjct: 174 KSGGKFIGLTLAESHVLGLLFSKFRFGWKMSIHVVSQKPSNKPSLLTFMVVAEKESSTVL 233
Query: 217 LQVTSSFDHSSLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNL 276
Q+T+SF SSLD N NQA G++EA+E+EN+ RREYS+GSD++YSLEDLQLGAKGD+
Sbjct: 234 HQITTSFARSSLDLNGNQARGLYEAIENENRIRREYSNGSDLIYSLEDLQLGAKGDLF-- 291
Query: 277 SPGCRFELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQW 336
+TRAHEWLFSSEEGQW
Sbjct: 292 --------------------------------------------QTRAHEWLFSSEEGQW 307
Query: 337 LVVESSKAARLIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIK 396
+VVESSKAARLIMVLLDTSH +ASMD+IQKDLSPLVK+LAP ++ GAQIPFM+AGDGIK
Sbjct: 308 MVVESSKAARLIMVLLDTSHTNASMDDIQKDLSPLVKRLAPANNNTGAQIPFMIAGDGIK 367
Query: 397 HRNVVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLM 456
R +VHQ TS+LTG I VED+VYENVD + S + PS+ L FRRL FQR +GLVQSEALL
Sbjct: 368 QRKIVHQVTSTLTGLITVEDVVYENVDGKVSHLVPSKALLFRRLTFQRAEGLVQSEALLT 427
Query: 457 RDGSSHRTDVETERKKASSSSKSKRKGTQRRSDD-----SGNQLKVYHGYLASSYHMGII 511
R+G + + ETERKK+ SSSKS++KG Q++ D S N LKVYH YLASSYHMGII
Sbjct: 428 REGGTQKIVSETERKKSISSSKSRKKGNQKKIDSLAIHGSSNNLKVYHNYLASSYHMGII 487
Query: 512 SGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 571
SGF LISSYLESVAS G++VKAVVIGLGAGLLPMFLH CMPF+ IE VELD +LNLA +
Sbjct: 488 SGFMLISSYLESVASTGRTVKAVVIGLGAGLLPMFLHGCMPFLDIEVVELDPVILNLARN 547
Query: 572 YFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTR--SCNGNCTASNA 629
YFGF +DK LKVHI DGI+FVR + A D +S H N + S NG+CTAS+A
Sbjct: 548 YFGFCEDKHLKVHIADGIQFVRGV----AADGVSGKHVNNDAQCDAECPSSNGSCTASHA 603
Query: 630 ------RVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683
+ DILIIDVDS DSSSGMTCPAADFV+ SFLLTVKD+LS+QGLF+VNLVSRS+A
Sbjct: 604 ERKVISKFDILIIDVDSSDSSSGMTCPAADFVDESFLLTVKDSLSDQGLFVVNLVSRSRA 663
Query: 684 TKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLV------ 737
K+MV+SRMK VF+HLFCLQLEEDVN VLF L +E CIK+ F EAAV+L KL+
Sbjct: 664 IKNMVVSRMKAVFSHLFCLQLEEDVNEVLFALRTEDCIKEEQFGEAAVELEKLLSWDRND 723
Query: 738 ---KFQHLEISQSIMDAAKKIRCLK 759
K + E+SQ I D+ +KI+CLK
Sbjct: 724 LPEKSKPPEMSQIIRDSTEKIKCLK 748
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826625|ref|XP_002881195.1| hypothetical protein ARALYDRAFT_902209 [Arabidopsis lyrata subsp. lyrata] gi|297327034|gb|EFH57454.1| hypothetical protein ARALYDRAFT_902209 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/781 (62%), Positives = 595/781 (76%), Gaps = 41/781 (5%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGKKK N++++SS D LQTL DFTSKENWDKFFT+RG DSFEWYAEWPQLRD L+ L
Sbjct: 1 MGKKKGNKAAASSD--DFLQTLEDFTSKENWDKFFTLRGNDDSFEWYAEWPQLRDSLLPL 58
Query: 61 IGAPTSSPPP---QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD 117
+ +SS QILVPGCGNSRLSEHLYDAGF ITNVDFSKVVISDMLRRN+R R +
Sbjct: 59 LQDSSSSSSSGSLQILVPGCGNSRLSEHLYDAGFRDITNVDFSKVVISDMLRRNIRTRPE 118
Query: 118 MRWRVMDMTSMQ------------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 165
+RWRVMD+T MQ G LDALMEPE+G KLGNQYLSE KR+LK GGKF+CL
Sbjct: 119 LRWRVMDITKMQLADESFDTVLDKGALDALMEPEVGTKLGNQYLSEAKRVLKPGGKFICL 178
Query: 166 TLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDH 225
TLAESHVL LLF +FRFGWKM+VH+I QK S+ L+TFMVVA+KENS ++ ++TS+FD
Sbjct: 179 TLAESHVLALLFSRFRFGWKMNVHSIAQKRSN---LKTFMVVAEKENSVLLHEITSAFDL 235
Query: 226 SSLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELI 285
SL N +Q G+ EALESENQ RR+ ++GSD+LYS EDL+LG KGD+ L+ G R +
Sbjct: 236 LSLGRNDSQGSGMCEALESENQIRRDCNNGSDLLYSHEDLKLGIKGDLAALTGGRRIKFT 295
Query: 286 LGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAA 345
LGG+G FSYRAVLLDA+ + PF+Y+CGVF+VPKTRAHEWLF SEEGQW VVESS+AA
Sbjct: 296 LGGQGS-NFSYRAVLLDAQRQTEPFVYHCGVFLVPKTRAHEWLFCSEEGQWQVVESSQAA 354
Query: 346 RLIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQAT 405
RLIMV LD+SH+ A+M++IQ DLSP+V QLAP DD+ A+IP+MMA DGIK R+ VH+ T
Sbjct: 355 RLIMVFLDSSHSGATMEDIQNDLSPMVTQLAPRNDDEEARIPYMMASDGIKKRDTVHEVT 414
Query: 406 SSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTD 465
SSLTG ++VED+VYE+ + PS DL FRRLVF+RT+GL+QSEALL+ DG
Sbjct: 415 SSLTGEVVVEDVVYESAPSNLEDLSPSSDLAFRRLVFKRTEGLIQSEALLVEDGEILE-- 472
Query: 466 VETERKKASSSSKSKRKGTQRRSDDSGNQL-KVYHGYLASSYHMGIISGFTLISSYLESV 524
+++++K S+SKRKG ++++ + L +V H YLASSYH GIISGFTL+SSYL+
Sbjct: 473 -QSQKEKTKDVSQSKRKGNKKQNQEPSKPLMRVSHDYLASSYHTGIISGFTLVSSYLKKA 531
Query: 525 ASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVH 584
S G VK VVIGLGAGLLPMFLH C+PF IEAVELD MLN+ +DYFGFT + LKVH
Sbjct: 532 ESCGTMVKTVVIGLGAGLLPMFLHGCLPFFSIEAVELDPVMLNVGKDYFGFTHNDRLKVH 591
Query: 585 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNAR----VDILIIDVDS 640
I DGIKF+R++ +S A+ +E TSN NG+ TA N + DILIIDVDS
Sbjct: 592 IADGIKFIRDITNSEAS--------SEETSNG--GSNGDSTAHNTQGGTCPDILIIDVDS 641
Query: 641 PDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLF 700
DSS G+TCPA+DF+E +FLL+VK AL + GLF+VNLVSRSQ+ KDMV++RMK VF+HLF
Sbjct: 642 ADSSGGLTCPASDFIEETFLLSVKRALPQHGLFVVNLVSRSQSVKDMVVARMKKVFDHLF 701
Query: 701 CLQLEE--DVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCL 758
LQLEE DVN+VLFGL SES I +N PE+AV L L+K Q LE QSI+DA KK++C
Sbjct: 702 GLQLEEEDDVNVVLFGLCSESVISENDIPESAVILEGLLKCQRLETKQSIIDATKKLKCW 761
Query: 759 K 759
K
Sbjct: 762 K 762
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 759 | ||||||
| TAIR|locus:2045253 | 760 | AT2G31740 [Arabidopsis thalian | 0.976 | 0.975 | 0.597 | 2.4e-234 | |
| MGI|MGI:1918699 | 698 | Mettl13 "methyltransferase lik | 0.534 | 0.581 | 0.334 | 1.5e-76 | |
| UNIPROTKB|A5PK19 | 699 | METTL13 "Methyltransferase-lik | 0.534 | 0.580 | 0.336 | 3e-76 | |
| RGD|1311526 | 700 | Mettl13 "methyltransferase lik | 0.536 | 0.581 | 0.331 | 2.6e-75 | |
| UNIPROTKB|D4A181 | 705 | Mettl13 "Similar to RIKEN cDNA | 0.724 | 0.780 | 0.306 | 2.9e-74 | |
| UNIPROTKB|F1PDJ6 | 699 | METTL13 "Uncharacterized prote | 0.534 | 0.580 | 0.334 | 2.1e-58 | |
| UNIPROTKB|F1S7S8 | 699 | METTL13 "Uncharacterized prote | 0.534 | 0.580 | 0.334 | 1.5e-57 | |
| UNIPROTKB|B4E2X3 | 698 | METTL13 "cDNA FLJ56024" [Homo | 0.534 | 0.581 | 0.329 | 1.8e-57 | |
| UNIPROTKB|Q8N6R0 | 699 | METTL13 "Methyltransferase-lik | 0.534 | 0.580 | 0.329 | 1.9e-57 | |
| ZFIN|ZDB-GENE-060929-60 | 690 | mettl13 "methyltransferase lik | 0.596 | 0.656 | 0.293 | 3.3e-57 |
| TAIR|locus:2045253 AT2G31740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2260 (800.6 bits), Expect = 2.4e-234, P = 2.4e-234
Identities = 465/778 (59%), Positives = 575/778 (73%)
Query: 1 MGKKKKNQXXXXXXATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGKKK N+ D LQTL DFTSKENWDKFFT+RG DSFEWYAEWPQL D L+ L
Sbjct: 1 MGKKKGNKAAASTD--DFLQTLEDFTSKENWDKFFTLRGNDDSFEWYAEWPQLHDSLLPL 58
Query: 61 I--GAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM 118
+ + +SS QILVPGCGNSRL+EHLYDAGF ITNVDFSKVVISDMLRRN+R R ++
Sbjct: 59 LQDSSSSSSDSLQILVPGCGNSRLTEHLYDAGFRDITNVDFSKVVISDMLRRNIRTRPEL 118
Query: 119 RWRVMDMTSMQ------------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166
RWRVMD+T MQ G LDALMEPE+G KLGNQYLSE KR+LK GGKF+CLT
Sbjct: 119 RWRVMDITKMQLADESFDTVLDKGALDALMEPEVGTKLGNQYLSEAKRVLKPGGKFICLT 178
Query: 167 LAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHS 226
LAESHVL LLF +FRFGWKM+VH+I QK S L+T+MVVA+KENS ++ ++TS+F+
Sbjct: 179 LAESHVLALLFSRFRFGWKMNVHSIAQKRSK---LKTYMVVAEKENSVLLHEITSAFELV 235
Query: 227 SLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELIL 286
SL N +Q G+ EA+ESEN+ RR+ ++GSD+LYS EDL+LG KGD+ L+ G R + L
Sbjct: 236 SLGRNDSQGSGMREAVESENKIRRDCNNGSDLLYSHEDLKLGIKGDLAELTEGRRIKFTL 295
Query: 287 GGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAAR 346
GG+G FSYRAVLLDA++ + PF+Y CGVF+VPKTRAHEWLF SEEGQW VVESS+AAR
Sbjct: 296 GGQGSN-FSYRAVLLDAQKQTEPFVYYCGVFLVPKTRAHEWLFCSEEGQWQVVESSQAAR 354
Query: 347 LIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATS 406
LIMV LD+SH+ A+M++IQ DLSP+V QLAP DD+ A+IP+MMA DGIK R+ VH+ TS
Sbjct: 355 LIMVFLDSSHSGATMEDIQNDLSPMVTQLAPRNDDE-ARIPYMMASDGIKKRDTVHEVTS 413
Query: 407 SLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDV 466
+TG ++VED+VYE+ + S DL FRRLVF+RT+GL+QSEALL+ DG
Sbjct: 414 PMTGKVVVEDVVYESAPSNLEDLSTSSDLAFRRLVFKRTEGLIQSEALLVEDGEILE--- 470
Query: 467 ETEXXXXXXXXXXXXXGTQRRSDDSGNQL-KVYHGYLASSYHMGIISGFTLISSYLEXXX 525
+++ G ++++ + L +V H YLASSYH GIISGFTL+SSYL+
Sbjct: 471 QSQKEKTKNVSQSKRKGNKKQNQEPSRPLMRVSHDYLASSYHTGIISGFTLVSSYLKKAE 530
Query: 526 XXXXXXXXXXIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHI 585
IGLGAGLLPMFLH C+PF IEAVELD ML++ +DYFGFTQ+ LKVHI
Sbjct: 531 SCGTMVKTVVIGLGAGLLPMFLHGCLPFFSIEAVELDPVMLSVGKDYFGFTQNDRLKVHI 590
Query: 586 TDGIKFVREMKSSSAT-DEMSVVHGN-EITSNNTRSCNGNCTASNARVDILIIDVDSPDS 643
DGIKF+R++ +S A+ +E S + N + T++NT+ G C DILIIDVDS DS
Sbjct: 591 ADGIKFIRDITNSEASSEESSNIGSNGDSTTHNTQG--GICP------DILIIDVDSADS 642
Query: 644 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQ 703
S G+TCPA+DF+E +FLL+VK AL + GLFIVNLV+RSQ+ KDMV+SRMK VF+HLF LQ
Sbjct: 643 SGGLTCPASDFIEETFLLSVKQALPQHGLFIVNLVTRSQSVKDMVVSRMKKVFDHLFGLQ 702
Query: 704 LEE--DVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 759
LEE DVN+VLFGL SES I +N PE+AV L L+K Q LE QSI+DA KK++C K
Sbjct: 703 LEEEDDVNVVLFGLCSESVISENDIPESAVILEGLLKCQRLETKQSIIDATKKLKCWK 760
|
|
| MGI|MGI:1918699 Mettl13 "methyltransferase like 13" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 481 (174.4 bits), Expect = 1.5e-76, Sum P(3) = 1.5e-76
Identities = 154/461 (33%), Positives = 227/461 (49%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L + L I P ++LV GCGNS LS
Sbjct: 10 EFGSADYWEKFFQQRG-KTAFEWYGTYLELCEVLHKYI-----KPKEKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------------GG 131
E LYD G+ I N+D S+VVI M RN R M + MDMT ++ G
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNGSRRPHMSFLKMDMTQLEFPDATFQVVLDKGT 123
Query: 132 LDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 188
LDA++ E E+ + ++ L+EV R+L+ GG+++C++LA++H+L F R GW +
Sbjct: 124 LDAVLTDEEEVTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRA 183
Query: 189 HAIPQK----SSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 242
H + S +EP SL F V K V F+ C + Q + L
Sbjct: 184 HQVASSQDRVSEAEPRFSLPVFAFVMTKFRP-VPGSALQIFEL----CTQEQGKPVR--L 236
Query: 243 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 302
ES +Q Y+ QL K + ++S +L G G+ ++ V
Sbjct: 237 ESADQLAEAVRERQ--YYAWLCSQLRRKAGLGSVS----LDLCSGDTGEPRYTLHVVDNP 290
Query: 303 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 362
A + S + +FI+P+ R EWLF EEG+ + S+ RL+ V L A M+
Sbjct: 291 AVKPSRDNHF--AIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLVTVALHRGQRYAGME 348
Query: 363 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYENV 422
IQ +LS V +LAP Q+PF+ G I R V HQ S+L+G ++ED+ E+
Sbjct: 349 SIQAELSARVMELAPAGLPPQQQVPFLSVGGDIGVRTVQHQDHSALSGDYVIEDVQGED- 407
Query: 423 DPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHR 463
R W FRRL+F + +VQSEA L++D +SHR
Sbjct: 408 -----R-W-----YFRRLIFLSNRNVVQSEARLLKD-TSHR 436
|
|
| UNIPROTKB|A5PK19 METTL13 "Methyltransferase-like protein 13" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.0e-76, Sum P(3) = 3.0e-76
Identities = 155/461 (33%), Positives = 223/461 (48%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVVGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------------GG 131
E LYD G+ I N+D S+VVI M RN R M + MDMT M+ G
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 132 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 188
LDA++ E L ++ L+EV R+L+ GG+++C++LA++HVL F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRV 183
Query: 189 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 242
H + Q +EP SL F + K V F+ + + K E L
Sbjct: 184 HQVASSQDQLLEAEPRFSLPVFAFIMTKFRP-VTGSALQIFELCAQEQGKPVRLESAEQL 242
Query: 243 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 302
+ R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 243 AEAVRERQQYAW----LCS----QLYRKAGLGSVS----LDLCNGDTGEPRYTLHVV--D 288
Query: 303 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 362
+ + +FI+P+ R EWLF EEG+ + S+ RLI V L MD
Sbjct: 289 SPTVKPSRDNHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRGQQYEGMD 348
Query: 363 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYENV 422
IQ +LS V +LAP Q+PF+ G I R V HQA S L+G ++ED+ +
Sbjct: 349 SIQAELSARVMELAPAGMPAQLQVPFLSVGGDIGVRIVQHQACSPLSGDYVIEDV--QGD 406
Query: 423 DPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHR 463
D + FRRL+F + +VQSEA L++D SHR
Sbjct: 407 DKRY----------FRRLIFLSNRNVVQSEARLLQD-VSHR 436
|
|
| RGD|1311526 Mettl13 "methyltransferase like 13" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 2.6e-75, Sum P(3) = 2.6e-75
Identities = 153/461 (33%), Positives = 226/461 (49%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L + L I P ++LV GCGNS LS
Sbjct: 10 EFGSADYWEKFFQHRG-KKTFEWYGTYLELCEVLHKYI-----KPKEKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------------GG 131
E LYD G+ I N+D S+VVI M RN R M + MDMT M+ G
Sbjct: 64 EQLYDVGYQDIMNIDISEVVIKQMKERNGSRRPHMSFLKMDMTHMEFPDATFQVVLDKGT 123
Query: 132 LDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 188
LDA++ E E + ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 189 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 242
H + Q S +EP SL F V K V F+ C + Q + L
Sbjct: 184 HQVTNSQDQVSEAEPRFSLPVFAFVMTKFRP-VPGSALQIFEL----CTQEQGKPVR--L 236
Query: 243 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 302
ES ++ + L+ A G + ++S +L G G+ ++ V
Sbjct: 237 ESADRLAEAVRERQHYAWLCSQLRRKAAG-LGSVS----LDLCSGDTGEPRYTLHVVDNP 291
Query: 303 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 362
A + S + +FI+P+ R EWLF EEG+ + S+ RL+ V L SM+
Sbjct: 292 AVKPSRDNHF--AIFIIPQGRETEWLFGMEEGRKQLASSAGFRRLVTVALHRGQRYDSME 349
Query: 363 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYENV 422
IQ +LS V +LAP Q+PF+ G I R V +A S+L+G ++ED+ E
Sbjct: 350 SIQAELSARVMELAPAGMPPKQQVPFLSVGGDIGVRTVQQRAHSALSGDYVIEDVQGE-- 407
Query: 423 DPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHR 463
D + FRRL+F + +VQSEA L++D SHR
Sbjct: 408 DRRY----------FRRLIFLSNRSVVQSEARLLKD-VSHR 437
|
|
| UNIPROTKB|D4A181 Mettl13 "Similar to RIKEN cDNA 5630401D24 (Predicted)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 595 (214.5 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 185/603 (30%), Positives = 282/603 (46%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L + L I P ++LV GCGNS LS
Sbjct: 10 EFGSADYWEKFFQHRG-KKTFEWYGTYLELCEVLHKYI-----KPKEKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------------GG 131
E LYD G+ I N+D S+VVI M RN R M + MDMT M+ G
Sbjct: 64 EQLYDVGYQDIMNIDISEVVIKQMKERNGSRRPHMSFLKMDMTHMEFPDATFQVVLDKGT 123
Query: 132 LDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 188
LDA++ E E + ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 189 HAIPQKSSSEPSLQT-FMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEALESENQ 247
H + + F + + V S C + Q + LES ++
Sbjct: 184 HQVTNSQDQVSEAEPRFSLPVFAFVMTKFRPVPGSALQIFELCTQEQGKPVR--LESADR 241
Query: 248 TRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLDARENS 307
+ L+ A G + ++S +L G G+ ++ V A + S
Sbjct: 242 LAEAVRERQHYAWLCSQLRRKAAG-LGSVS----LDLCSGDTGEPRYTLHVVDNPAVKPS 296
Query: 308 GPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMDEIQKD 367
+ +FI+P+ R EWLF EEG+ + S+ RL+ V L SM+ IQ +
Sbjct: 297 RDNHF--AIFIIPQGRETEWLFGMEEGRKQLASSAGFRRLVTVALHRGQRYDSMESIQAE 354
Query: 368 LSPLVKQLAP-GKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYENVDPEF 426
LS V +LAP G + Q+PF+ G I R V +A S+L+G ++ED+ E D +
Sbjct: 355 LSARVMELAPAGMPPK--QVPFLSVGGDIGVRTVQQRAHSALSGDYVIEDVQGE--DRRY 410
Query: 427 SRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETEXXXXXXXXXXXXXGTQR 486
FRRL+F + +VQSEA L++D SHR +V
Sbjct: 411 ----------FRRLIFLSNRSVVQSEARLLKD-VSHRGEVSHRAQKKRKKDKKKQQPADL 459
Query: 487 RSD--DSGNQLKVYHGYLASSYHMGIISGFTLISSYLEXXXXXXXXXXXXXIGLGAGLLP 544
D + Q + YL +H +I+G L+ + +GLG G LP
Sbjct: 460 SEDVPPAPGQC-IDKSYLCCEHHKAMIAGLALLRN---PELLLETPLALLVVGLGGGSLP 515
Query: 545 MFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEM 604
+F+H+ P I+AVE+D +ML +A +FGF Q +KVHI DG+ +V + A
Sbjct: 516 LFIHDHFPKSRIDAVEIDPSMLEVATQWFGFAQSDRMKVHIADGLDYVTSLAGGEARPHY 575
Query: 605 SVV 607
V+
Sbjct: 576 DVI 578
|
|
| UNIPROTKB|F1PDJ6 METTL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 2.1e-58, Sum P(2) = 2.1e-58
Identities = 154/461 (33%), Positives = 223/461 (48%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
DF S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 DFGSVDYWEKFFQQRG-KKAFEWYGSYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------------GG 131
E LYD G+ I N+D S+VVI M RN R M + MDMT M+ G
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 132 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 188
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 189 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 242
H + Q +EP SL F + K V F+ + + K E L
Sbjct: 184 HQVANSQDQVLEAEPRFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQGKPVRLESAEQL 242
Query: 243 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 302
+ R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 243 AEAVRERQQYAW----LCS----QLYRKAGLGSVS----LDLCDGDTGEPRYTLHVV--D 288
Query: 303 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 362
+ + +FI+P+ R EWLF EEG+ + ++ RLI V L MD
Sbjct: 289 SPTVKPSRDNHFAIFIIPQGRETEWLFGMEEGRKQLAATAGFRRLITVALHRGQQYEGMD 348
Query: 363 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYENV 422
IQ +LS V +LAP Q+PF+ G I R V HQ S L+G +VED+ +
Sbjct: 349 SIQAELSARVMELAPAGMPSQQQVPFLSVGGDIGVRTVQHQNCSPLSGSYVVEDV--QGD 406
Query: 423 DPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHR 463
D + FRRL+F + +VQSEA L++D +SHR
Sbjct: 407 DKHY----------FRRLIFLSNRNVVQSEARLLKD-ASHR 436
|
|
| UNIPROTKB|F1S7S8 METTL13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 1.5e-57, Sum P(2) = 1.5e-57
Identities = 154/461 (33%), Positives = 222/461 (48%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------------GG 131
E LYD G+ I N+D S+VVI M RN R + + MDMT M+ G
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQLSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 132 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 188
LDA++ E L ++ L+EV R+L+ GG+++C++LA++HVL F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRV 183
Query: 189 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 242
H + Q SEP SL F + K V F+ + + K E L
Sbjct: 184 HQVANSQDQLLDSEPRFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQGKPVRLESAERL 242
Query: 243 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 302
+ R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 243 AEAVRERQQYAW----LCS----QLYRKAGLGSVS----LDLCNGDTGEPRYTLHVV--D 288
Query: 303 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 362
+ + +FI+P+ R EWLF EEG+ + S+ RLI V L MD
Sbjct: 289 SPTVKASRDSHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRGQQYEGMD 348
Query: 363 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYENV 422
IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED+ +
Sbjct: 349 SIQAELSARVMELAPAGMPAQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDV--QGD 406
Query: 423 DPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHR 463
D + FRRL+F + +VQSEA L++D SHR
Sbjct: 407 DRRY----------FRRLIFLSNRNVVQSEARLLKD-VSHR 436
|
|
| UNIPROTKB|B4E2X3 METTL13 "cDNA FLJ56024" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 464 (168.4 bits), Expect = 1.8e-57, Sum P(2) = 1.8e-57
Identities = 152/461 (32%), Positives = 222/461 (48%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 9 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 62
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------------GG 131
E LYD G+ I N+D S+VVI M N R M + MDMT M+ G
Sbjct: 63 EQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGT 122
Query: 132 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 188
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 123 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 182
Query: 189 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 242
H + Q +EP SL F + K V F+ + + K E L
Sbjct: 183 HQVANSQDQVLEAEPQFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQRKPVRLESAERL 241
Query: 243 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 302
Q R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 242 AEAVQERQQYAW----LCS----QLRRKARLGSVS----LDLCDGDTGEPRYTLHVV--D 287
Query: 303 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 362
+ + +FI+P+ R EWLF +EG+ + S+ RLI V L SMD
Sbjct: 288 SPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESMD 347
Query: 363 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYENV 422
IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED+ +
Sbjct: 348 HIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDV--QGD 405
Query: 423 DPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHR 463
D + FRRL+F + +VQSEA L++D SH+
Sbjct: 406 DKRY----------FRRLIFLSNRNVVQSEARLLKD-VSHK 435
|
|
| UNIPROTKB|Q8N6R0 METTL13 "Methyltransferase-like protein 13" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 464 (168.4 bits), Expect = 1.9e-57, Sum P(2) = 1.9e-57
Identities = 152/461 (32%), Positives = 222/461 (48%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------------GG 131
E LYD G+ I N+D S+VVI M N R M + MDMT M+ G
Sbjct: 64 EQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 132 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 188
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 189 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 242
H + Q +EP SL F + K V F+ + + K E L
Sbjct: 184 HQVANSQDQVLEAEPQFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQRKPVRLESAERL 242
Query: 243 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 302
Q R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 243 AEAVQERQQYAW----LCS----QLRRKARLGSVS----LDLCDGDTGEPRYTLHVV--D 288
Query: 303 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 362
+ + +FI+P+ R EWLF +EG+ + S+ RLI V L SMD
Sbjct: 289 SPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESMD 348
Query: 363 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYENV 422
IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED+ +
Sbjct: 349 HIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDV--QGD 406
Query: 423 DPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHR 463
D + FRRL+F + +VQSEA L++D SH+
Sbjct: 407 DKRY----------FRRLIFLSNRNVVQSEARLLKD-VSHK 436
|
|
| ZFIN|ZDB-GENE-060929-60 mettl13 "methyltransferase like 13" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 469 (170.2 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 149/508 (29%), Positives = 233/508 (45%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F+S + W++FF RG +FEWY ++ L L I P ++LV GC
Sbjct: 4 LPRTAEEFSSADYWERFFRKRG-EKAFEWYGDYNSLCGVLHKYI-----KPRDKVLVVGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT-------SMQ- 129
GNS LSE LYD G+ +TN+D S+ V+S M +RN R D+ ++ +D T S Q
Sbjct: 58 GNSELSEQLYDVGYRQLTNIDISETVVSHMNQRNAERRPDLSFQQLDATQTGFESGSFQV 117
Query: 130 ----GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWK 185
G LDA+ E G L + L+EV R+L GG++VC+TLA+ HV+ L F GW
Sbjct: 118 TLDKGTLDAMASEEDG-ALAGRMLAEVGRVLAVGGRYVCITLAQEHVIKLAVEHFVKGWA 176
Query: 186 MSVHAIP----QKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEA 241
+ VH + ++S S +L F++V K + V D + + E
Sbjct: 177 VRVHCLTGQQNEESDSSFALPVFVLVCTKFRQAPPFAVLELCQGE--DGAPARLASVEEL 234
Query: 242 LESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLL 301
L + + R+ Y+ +L+ L G + +P G Y +
Sbjct: 235 LSAVKE-RQAYNL---MLHKLRG------GTDSSSTPSLTLCHAASGRP----RYTLTIQ 280
Query: 302 DARENSG-PFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASAS 360
D ++ P + +FIVP+ R +WL+ S EG+ + S+K RL++V +
Sbjct: 281 DGPPSAKTPRSNHFAIFIVPQGRESDWLYGSAEGRAQLASSAKFRRLVIVAMHRDQEYED 340
Query: 361 MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYE 420
M +Q +LSP+V +LAP Q+PF+ G + R V+ + S+LTG VED+ E
Sbjct: 341 MQAVQSELSPVVMELAPPGMPANQQVPFLSVGGDLGWREVIGRGLSALTGEYSVEDVRGE 400
Query: 421 NVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETEXXXXXXXXXXX 480
+ +RRL+F LVQSE+ L S+ ++
Sbjct: 401 ------------DGYLYRRLIFMNNSQLVQSESRLQ---SAAAASSASKKKNKKKAKQPA 445
Query: 481 XXGTQRRSDDSGNQLKVYHGYLASSYHM 508
G + RS D G +H + + M
Sbjct: 446 STGAKDRSVDRGFLCCTHHEVMVAGLAM 473
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| A5PK19 | MET13_BOVIN | 2, ., 1, ., 1, ., - | 0.3191 | 0.8155 | 0.8855 | yes | no |
| Q91YR5 | MET13_MOUSE | 2, ., 1, ., 1, ., - | 0.3116 | 0.8023 | 0.8724 | yes | no |
| Q8N6R0 | MET13_HUMAN | 2, ., 1, ., 1, ., - | 0.3193 | 0.8102 | 0.8798 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 759 | |||
| COG0421 | 282 | COG0421, SpeE, Spermidine synthase [Amino acid tra | 2e-09 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 2e-06 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 2e-06 | |
| PRK04457 | 262 | PRK04457, PRK04457, spermidine synthase; Provision | 3e-05 | |
| PRK00811 | 283 | PRK00811, PRK00811, spermidine synthase; Provision | 5e-04 |
| >gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 50/176 (28%)
Query: 532 KAVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFT----QDKSLKVH 584
+ ++IG G G L E + P I VE+D ++ LA Y D +++
Sbjct: 79 RVLIIGGGDGGT---LREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEII 135
Query: 585 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS 644
I DG++F+R+ + D++I+D P
Sbjct: 136 IDDGVEFLRD--------------------------------CEEKFDVIIVDSTDPVG- 162
Query: 645 SGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLF 700
PA F + AL E G+F+ + S +D I+ + +F
Sbjct: 163 -----PAEALFTEEFYEGCRRALKEDGIFVAQ--AGSPFLQDEEIALAYRNVSRVF 211
|
Length = 282 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 24/101 (23%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM------- 128
GCG L+E L G +T VD S +ML R R+ ++ V D +
Sbjct: 4 GCGTGLLAEALARRGGARVTGVDLSP----EMLAL-ARKRAPRKFVVGDAEDLPFPDESF 58
Query: 129 -----QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 164
L L +PE + L E+ R+LK GGK V
Sbjct: 59 DVVVSSLVLHHLPDPE-------RALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-06
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 72 ILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQG 130
+L GCG L+ L +T VD S V + + +D + D +
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 131 GLD-----ALMEPELGHKLGNQ--YLSEVKRLLKSGGKFVC 164
D + +P L H + + +L E +RLLK GG V
Sbjct: 62 EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|179854 PRK04457, PRK04457, spermidine synthase; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 529 KSVKAVV-IGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHI 585
+ ++ IGLG G L F++ +P AVE++ ++ +A ++F + +V
Sbjct: 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHF-ELPENGERFEVIE 123
Query: 586 TDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIID-VDS---P 641
DG +++ + S+ D++++D D
Sbjct: 124 ADGAEYIAVHRHST--------------------------------DVILVDGFDGEGII 151
Query: 642 DSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFN-HLF 700
D F ++ALS G+F+VNL SR + D + R++ F +
Sbjct: 152 D----------ALCTQPFFDDCRNALSSDGIFVVNLWSRDKRY-DRYLERLESSFEGRVL 200
Query: 701 CLQLEEDVNLVLFGLSS 717
L E N+ +F S
Sbjct: 201 ELPAESHGNVAVFAFKS 217
|
Length = 262 |
| >gnl|CDD|234843 PRK00811, PRK00811, spermidine synthase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 5e-04
Identities = 31/121 (25%), Positives = 42/121 (34%), Gaps = 43/121 (35%)
Query: 559 VELDLTMLNLAEDYF-----GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 613
VE+D ++ + Y G D +++ I DGIKFV E T+
Sbjct: 106 VEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE------TEN---------- 149
Query: 614 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 673
D +II VDS D PA F K AL E G+F
Sbjct: 150 ----------------SFD-VII-VDSTDPVG----PAEGLFTKEFYENCKRALKEDGIF 187
Query: 674 I 674
+
Sbjct: 188 V 188
|
Length = 283 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 759 | |||
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 100.0 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.97 | |
| PLN02823 | 336 | spermine synthase | 99.92 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 99.89 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 99.89 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.88 | |
| PLN02366 | 308 | spermidine synthase | 99.87 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.82 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.79 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 99.73 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.67 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.66 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.61 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.57 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.56 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.55 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.53 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.51 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.49 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.48 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.47 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.47 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 99.46 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.44 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.44 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.44 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.43 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.43 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.42 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.42 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.38 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 99.37 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.36 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.36 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.35 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.35 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.34 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.34 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.34 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.33 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.33 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.32 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.31 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.31 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.31 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.3 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.29 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.29 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.29 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.28 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.27 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.27 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.27 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.26 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.24 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.24 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.24 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.24 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.23 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.22 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.22 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.22 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.21 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.19 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.19 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.19 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.18 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.18 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.16 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.16 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.15 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.15 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.15 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.14 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.13 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.13 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.13 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.12 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.11 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.11 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.1 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.1 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.1 | |
| PLN02476 | 278 | O-methyltransferase | 99.09 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.09 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.08 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.08 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.07 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.07 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.07 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.06 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.06 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.06 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.06 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.05 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.05 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.05 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.05 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.05 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.04 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.04 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.04 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.03 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.03 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.03 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.02 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.02 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.02 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.02 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.02 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.02 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.0 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.0 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.99 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.99 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.98 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.98 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.98 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.95 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.95 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.94 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.94 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.93 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.92 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.91 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.91 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.91 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.9 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.87 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.86 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.86 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.85 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.85 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.85 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.84 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.84 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.84 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.82 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.82 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.8 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.8 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.8 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.8 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.78 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.77 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.76 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.76 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.75 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.73 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.72 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.72 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.69 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.69 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.68 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.67 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.67 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.67 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 98.65 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.64 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.64 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.64 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.63 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.62 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.62 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.62 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.62 | |
| PLN02366 | 308 | spermidine synthase | 98.62 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.62 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.61 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.61 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.61 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.6 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.6 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.6 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.59 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.59 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.59 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.58 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.57 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.57 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.56 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.56 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.56 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.56 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.55 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.55 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.55 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.54 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.53 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.53 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.53 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.52 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.51 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.5 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.49 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.49 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.49 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 98.49 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.48 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.48 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.47 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.47 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.47 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.47 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.46 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.46 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.46 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.45 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.45 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.44 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.43 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.43 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.43 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.43 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 98.42 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.42 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.42 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.42 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.39 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.39 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.39 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.38 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.38 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.38 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.37 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.36 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.36 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.36 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.36 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 98.35 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.35 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.35 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.35 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.35 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.34 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.34 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.34 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.33 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.33 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.33 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.32 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.32 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.31 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.31 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.3 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.3 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.3 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.3 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.29 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.28 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.28 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.27 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.27 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.26 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.26 | |
| PLN02476 | 278 | O-methyltransferase | 98.26 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.25 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.25 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.24 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.24 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.24 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.21 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.2 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.2 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.19 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.19 | |
| PLN02823 | 336 | spermine synthase | 98.19 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.19 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.19 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.18 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.17 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.17 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.17 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.17 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.14 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.14 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.13 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.13 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.12 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.11 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.11 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.11 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.11 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.1 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.1 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.1 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.09 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.09 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.08 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.06 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.05 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.05 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.04 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.04 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.03 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.02 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.01 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.0 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.99 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.99 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.98 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 97.98 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 97.97 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.96 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.96 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 97.95 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.95 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 97.95 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 97.94 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.94 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 97.94 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 97.93 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.93 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 97.92 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 97.91 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.91 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.91 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.91 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 97.9 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.89 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.88 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 97.87 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.87 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.86 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.85 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 97.82 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.81 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.8 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 97.8 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.8 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 97.8 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.78 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.78 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.77 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.76 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 97.75 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.75 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 97.75 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.75 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.74 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.74 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.73 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.73 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.71 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.7 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 97.7 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.69 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 97.69 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.69 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.69 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.69 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.68 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.67 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.67 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.66 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.66 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 97.66 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.65 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 97.65 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.64 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.63 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 97.6 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.6 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.6 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.59 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.59 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.59 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.54 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.52 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.52 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.51 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.48 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.46 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.46 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.45 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.45 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.43 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.43 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 97.42 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.41 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 97.4 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 97.39 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 97.35 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.35 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.34 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 97.34 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 97.34 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.29 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.25 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.25 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.24 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.24 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 97.22 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.19 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.19 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.18 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.16 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.16 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.15 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.15 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.13 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.13 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.12 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.11 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.11 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.1 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.07 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 97.03 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.02 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.01 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.01 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.0 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.0 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.98 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 96.96 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.95 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.94 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.92 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.9 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.9 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 96.89 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.84 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.83 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 96.83 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 96.82 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.81 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.8 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.77 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.61 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 96.53 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 96.52 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.46 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.45 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.35 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.34 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.33 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.33 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 96.25 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.22 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.14 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.12 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.08 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.04 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 96.0 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 95.98 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 95.96 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.96 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 95.9 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 95.83 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 95.81 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.79 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 95.71 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.69 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 95.66 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 95.63 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.58 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.57 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 95.51 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.48 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 95.46 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.4 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 95.35 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.19 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 95.14 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 95.1 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.02 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.91 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 94.85 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.85 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 94.83 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.82 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 94.81 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 94.72 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 94.63 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 94.61 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.54 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 94.54 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 94.5 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 94.44 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 94.42 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.13 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 93.93 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 93.83 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 93.81 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 93.7 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 93.68 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 93.63 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 93.61 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 93.58 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 93.58 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 93.45 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 93.38 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 93.31 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 93.26 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 93.11 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 92.84 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 92.8 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 92.78 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 92.74 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 92.25 |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-63 Score=540.07 Aligned_cols=442 Identities=41% Similarity=0.627 Sum_probs=393.4
Q ss_pred ccccccCCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCC-eEEEECCCcchhHHHHHHhCCCeEEE
Q 004354 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPP-QILVPGCGNSRLSEHLYDAGFHGITN 96 (759)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~-~ILDlGCG~G~ls~~L~~~G~~~Vtg 96 (759)
+|.+..+|.+..||++||..++ ...+|||+.|..++..|..++. +.. ++|.+|||++.+++++++.||++|+.
T Consensus 3 ~p~~~~~~~s~~~wd~rf~~rg-~~~~ewY~~~l~l~~~i~~~~~-----p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~ 76 (482)
T KOG2352|consen 3 LPQEQLSFGSVVYWDKRFQPRG-SDPFEWYGALLSLSGSIMKYLS-----PSDFKILQLGCGNSELSEHLYKNGFEDITN 76 (482)
T ss_pred CcccccccCcchhhhhhccccC-CChHHHHHHHHHHHHHHHHhhc-----hhhceeEeecCCCCHHHHHHHhcCCCCcee
Confidence 7999999999999999999886 6889999999999999999985 345 99999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhccCCCCcEEEEeecccCC------------CcccEEEeCCCChh---HHHHHHHHHHHhcccCcE
Q 004354 97 VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------------GGLDALMEPELGHK---LGNQYLSEVKRLLKSGGK 161 (759)
Q Consensus 97 IDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~------------gtfD~Ii~~~~~~~---~~~~~l~ei~rvLkpGG~ 161 (759)
+|+|+.+++.|..+.....+.+.|..+|+..+. |++|+.++.+...+ ....++.+++|+|++||+
T Consensus 77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk 156 (482)
T KOG2352|consen 77 IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGK 156 (482)
T ss_pred ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCE
Confidence 999999999999988777888999999998876 55555555554444 477888888888888888
Q ss_pred EEEEEcCchhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCCccccceeeecCCCCCccCccchhhHHHH
Q 004354 162 FVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEA 241 (759)
Q Consensus 162 liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (759)
++.+++.+
T Consensus 157 ~~svtl~~------------------------------------------------------------------------ 164 (482)
T KOG2352|consen 157 YISVTLVQ------------------------------------------------------------------------ 164 (482)
T ss_pred EEEEEeee------------------------------------------------------------------------
Confidence 88887654
Q ss_pred HHhhhhHhhhhcCCCccchhhhhhhccccccccccCCCceeEEEeCCCCCceeeEEEEEEeCCCCCCCCcccEEEEEeeC
Q 004354 242 LESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPK 321 (759)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~~v~D~~~~~~~~~~~~a~fiVP~ 321 (759)
+||+
T Consensus 165 ----------------------------------------------------------------------------~vp~ 168 (482)
T KOG2352|consen 165 ----------------------------------------------------------------------------VVPQ 168 (482)
T ss_pred ----------------------------------------------------------------------------eccC
Confidence 8999
Q ss_pred CCccccccCChhhHHHHHHhcCCCEEEEEEeCCCCCCCc--hHHHHHhhhHHHHhcCCCCCCCCCCccEEecCCCceeee
Q 004354 322 TRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASAS--MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRN 399 (759)
Q Consensus 322 gre~ewlfst~~G~~~l~~sa~~~RLi~v~l~~~~~~~~--~~~v~~el~~~v~~l~P~~~~~~~~ip~l~~~~~i~~r~ 399 (759)
||+++|+|+++.|++++..+++..||++|.+++++.|.. +++++..+++.+..+.|+++++..+.|+++.|+++
T Consensus 169 ~r~~e~~~~~p~G~~~~~~~s~~~~l~~v~l~~gq~~~~~~~~~~~~~~s~~~~~l~~~g~~~~~q~~~ls~g~d~---- 244 (482)
T KOG2352|consen 169 GRKPEWLFGSPGGSKQMNVSSSGERLAIVALHRGQQYSTPQEDEVQDPLSPFRRQLDPKGEPTQQQREILSIGEDV---- 244 (482)
T ss_pred CCCeeeeecCccchhhhhhhccCcceEEEEeccCccccchHHhhhccccccceeecccccCChhhhhccccccccc----
Confidence 999999999999999999999999999999999999998 89999999999999999999888899999877553
Q ss_pred EEEEEecCCccCEEEEEeecccCCCCccccCCCCCceeeeEEecCCCCceecceEeeccCCCCCcchhhhhhhccccccc
Q 004354 400 VVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKS 479 (759)
Q Consensus 400 ~~~~~~s~~~G~~~Vedv~~e~~~~~~~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~~ 479 (759)
..|||.+..|.|++|||++..
T Consensus 245 ------------------------------------~~~~l~~~~n~nv~q~~~k~~----------------------- 265 (482)
T KOG2352|consen 245 ------------------------------------GVRRLPPCGNMNVVQSEAKKD----------------------- 265 (482)
T ss_pred ------------------------------------ccccccCCCCcceecCchhcc-----------------------
Confidence 356666666999999996110
Q ss_pred cccCcccCCCCCCcceeecCCccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEE
Q 004354 480 KRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAV 559 (759)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~V 559 (759)
...+|+|+||+.|+++++|+..... ...+...++||+|+|||.||+||+.++|...+++|
T Consensus 266 ------------------r~~~l~s~~h~~m~~g~aL~~n~~~--~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~v 325 (482)
T KOG2352|consen 266 ------------------RKPELASQYHQMMIGGLALIMNRPP--QKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAV 325 (482)
T ss_pred ------------------cCcccCcchhhhhhccceeccccCc--hhccccCcEEEEecCCCccccceeeecCccceeEE
Confidence 0128999999999999999876543 23366789999999999999999999999999999
Q ss_pred EcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCC
Q 004354 560 ELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD 639 (759)
Q Consensus 560 EiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~ 639 (759)
|+||+|+++|+.||||..+.|.+||++||++|+++..+. ...+.+||+|++|+|
T Consensus 326 e~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~--------------------------~~~~~~~dvl~~dvd 379 (482)
T KOG2352|consen 326 EIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKS--------------------------QQEDICPDVLMVDVD 379 (482)
T ss_pred EEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhc--------------------------cccccCCcEEEEECC
Confidence 999999999999999998889999999999999998731 123578999999999
Q ss_pred CCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHHHHHHHhcCceEEEeecCCccEEEEEecCCC
Q 004354 640 SPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSES 719 (759)
Q Consensus 640 s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~~ 719 (759)
++| +.||+|||+.|++..+|..++..|.|.|+|++|+++|+..+++++...|+++|+++|.+++++++|.|++|..++.
T Consensus 380 s~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l~~~~~~~~~N~il~~~~~~~ 458 (482)
T KOG2352|consen 380 SKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFPQLYHHQLEEDVNEILIGQMPPK 458 (482)
T ss_pred CCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhhHHHhhhhccCCCceeEEeecChh
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCC
Q 004354 720 CIKD 723 (759)
Q Consensus 720 ~~~~ 723 (759)
....
T Consensus 459 ~~~~ 462 (482)
T KOG2352|consen 459 QKPG 462 (482)
T ss_pred cCch
Confidence 4433
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=264.32 Aligned_cols=223 Identities=21% Similarity=0.322 Sum_probs=190.5
Q ss_pred eeeeEEecCCCCceecceEeeccCCCCCcchhhhhhhccccccccccCcccCCCCCCcceeecCCccchHHHHHHHHHHh
Q 004354 436 KFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFT 515 (759)
Q Consensus 436 ~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~ 515 (759)
-+|.|.| +.+.+||.+.+. ||..|.++|+++|++++.
T Consensus 26 ~~R~L~f--~~~~~qs~~~~~-----------------------------------------~P~~l~~~y~~~m~~~l~ 62 (262)
T PRK04457 26 GVRSLHL--GSDTVQSSMRID-----------------------------------------DPSELELAYTRAMMGFLL 62 (262)
T ss_pred CEEEEEE--CCCcceeeeecC-----------------------------------------CcccccCHHHHHHHHHHh
Confidence 4999999 556999987664 366788999999997765
Q ss_pred hhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeEEEEccHHHHHHh
Q 004354 516 LISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVRE 594 (759)
Q Consensus 516 l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~-~~rl~v~i~Da~~~l~~ 594 (759)
+. +.+.+||+||+|+|+++.+++..+|..+|++||+||+|+++|+++|+++. ++|++++++||.+|+.+
T Consensus 63 ~~----------~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~ 132 (262)
T PRK04457 63 FN----------PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV 132 (262)
T ss_pred cC----------CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh
Confidence 42 45689999999999999999999999999999999999999999998864 58999999999999976
Q ss_pred hcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 595 MKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
.. .+||+|++|++++. .+|..+.+.+|++.++++|+|||+|+
T Consensus 133 ~~--------------------------------~~yD~I~~D~~~~~------~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 133 HR--------------------------------HSTDVILVDGFDGE------GIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred CC--------------------------------CCCCEEEEeCCCCC------CCccccCcHHHHHHHHHhcCCCcEEE
Confidence 43 57999999987653 14778899999999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHhcCc-eEEEeecCCccEEEEEecC-CCCCCCCcHHHHHHHHhhhcCCCchhHHHHHHH
Q 004354 675 VNLVSRSQATKDMVISRMKMVFNH-LFCLQLEEDVNLVLFGLSS-ESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMD 750 (759)
Q Consensus 675 ~N~~~~~~~~~~~v~~~l~~vF~~-v~~~~~~~~~N~Vl~a~~~-~~~~~~~~l~~~a~~l~~~~~~~~~~~~~~~~~ 750 (759)
+|++.++... ..++++++++|++ ++.++..++.|.|++|++. +.......|.++|+.|++.++++-..+.+.+..
T Consensus 175 in~~~~~~~~-~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~~~~~~~~~~~l~~~a~~l~~~~~~~~~~~~~~~~~ 251 (262)
T PRK04457 175 VNLWSRDKRY-DRYLERLESSFEGRVLELPAESHGNVAVFAFKSAPKELRWDKLRKRAKKLENEHGLDFHRFVAKLKA 251 (262)
T ss_pred EEcCCCchhH-HHHHHHHHHhcCCcEEEEecCCCccEEEEEECCCCCCcCHHHHHHHHHHHHHHhCCCHHHHHHHHhh
Confidence 9999877654 5679999999985 7888888889999999885 445666779999999999999997777776643
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=227.48 Aligned_cols=182 Identities=15% Similarity=0.225 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC----CCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~----~~~ 579 (759)
+.||+.|+ +++++.+ +++++||+||+|+|++++.+..+.+..+|++|||||+|+++|++||++. .++
T Consensus 87 ~~YhE~l~-h~~l~~~--------~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dp 157 (336)
T PLN02823 87 FVYHESLV-HPALLHH--------PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDK 157 (336)
T ss_pred HHHHHHHH-hHHHhhC--------CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCC
Confidence 45988655 4445444 5788999999999999998888876779999999999999999999764 479
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++||++||++.. .+||+||+|+.++ .. .+|+..|++.+|
T Consensus 158 rv~v~~~Da~~~L~~~~--------------------------------~~yDvIi~D~~dp--~~--~~~~~~Lyt~eF 201 (336)
T PLN02823 158 RLELIINDARAELEKRD--------------------------------EKFDVIIGDLADP--VE--GGPCYQLYTKSF 201 (336)
T ss_pred ceEEEEChhHHHHhhCC--------------------------------CCccEEEecCCCc--cc--cCcchhhccHHH
Confidence 99999999999996542 6799999998543 22 135788999999
Q ss_pred HH-HHHHccCcCcEEEEEecCC----ChhHHHHHHHHHHHhcCceEEEee--c--CCccEEEEEecCCCC-CCCCcHHHH
Q 004354 660 LL-TVKDALSEQGLFIVNLVSR----SQATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSSESC-IKDNSFPEA 729 (759)
Q Consensus 660 l~-~~~~~L~~~Gilv~N~~~~----~~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~Vl~a~~~~~~-~~~~~l~~~ 729 (759)
++ .++++|+|||++++|..+. .......++++|+++|++++.+.. + .+.+..++|++.+.. ++...+.++
T Consensus 202 ~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~~~vPsf~~~w~f~~aS~~~~~~~~~~~~~~~ 281 (336)
T PLN02823 202 YERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYTAHVPSFADTWGWVMASDHPFADLSAEELDSR 281 (336)
T ss_pred HHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEEeecCCCCCceEEEEEeCCccccCChhHHHHh
Confidence 99 9999999999999998653 245677889999999999877653 2 234567888887642 444445554
Q ss_pred H
Q 004354 730 A 730 (759)
Q Consensus 730 a 730 (759)
.
T Consensus 282 ~ 282 (336)
T PLN02823 282 I 282 (336)
T ss_pred h
Confidence 4
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=207.68 Aligned_cols=187 Identities=21% Similarity=0.380 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC----CC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ----DK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~----~~ 579 (759)
+.| +.|++++++.+| +++++|||||+|.|++++.+.++.+..++++|||||.|+++||+||+... |+
T Consensus 60 ~~y-hEml~h~~~~ah--------~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dp 130 (282)
T COG0421 60 FIY-HEMLAHVPLLAH--------PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDP 130 (282)
T ss_pred HHH-HHHHHhchhhhC--------CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCC
Confidence 445 457777777776 77789999999999999999999888899999999999999999997665 89
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++||.+||++.. .+||+||+|.+++. + |.+.|++.+|
T Consensus 131 Rv~i~i~Dg~~~v~~~~--------------------------------~~fDvIi~D~tdp~--g----p~~~Lft~eF 172 (282)
T COG0421 131 RVEIIIDDGVEFLRDCE--------------------------------EKFDVIIVDSTDPV--G----PAEALFTEEF 172 (282)
T ss_pred ceEEEeccHHHHHHhCC--------------------------------CcCCEEEEcCCCCC--C----cccccCCHHH
Confidence 99999999999999875 48999999886652 2 7899999999
Q ss_pred HHHHHHccCcCcEEEEEecC---CChhHHHHHHHHHHHhcCce--EEEeecC--Cc-cEEEEEecCCC-CCC-CCcHHHH
Q 004354 660 LLTVKDALSEQGLFIVNLVS---RSQATKDMVISRMKMVFNHL--FCLQLEE--DV-NLVLFGLSSES-CIK-DNSFPEA 729 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~---~~~~~~~~v~~~l~~vF~~v--~~~~~~~--~~-N~Vl~a~~~~~-~~~-~~~l~~~ 729 (759)
++.|+++|+++|+++.|.-+ .. .....+...++++|+.+ |...++. .. ..+++++.... ... .+..+.+
T Consensus 173 y~~~~~~L~~~Gi~v~q~~~~~~~~-~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~~~~~~~~~~~~~~~~ 251 (282)
T COG0421 173 YEGCRRALKEDGIFVAQAGSPFLQD-EEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFNKAHPLKSLDALQAR 251 (282)
T ss_pred HHHHHHhcCCCcEEEEecCCcccch-HHHHHHHHHHHhhccccccceeccceecCCceEEEEeecCCCCcccchhHHHHH
Confidence 99999999999999999322 22 23345678889999853 3333332 22 34666763332 222 2335555
Q ss_pred HHHHhhhcCC
Q 004354 730 AVQLGKLVKF 739 (759)
Q Consensus 730 a~~l~~~~~~ 739 (759)
+..+ ..+++
T Consensus 252 ~~~~-~~~~y 260 (282)
T COG0421 252 ALAL-LTLKY 260 (282)
T ss_pred Hhhh-hhhcc
Confidence 5555 44454
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=210.41 Aligned_cols=168 Identities=24% Similarity=0.387 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl----~~~~ 579 (759)
..||++|+ +++++.+ +++++||+||+|+|++++.+.++.+..+|++|||||.|+++|++||+. ..|+
T Consensus 60 ~~y~e~l~-h~~~~~~--------~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~ 130 (246)
T PF01564_consen 60 FIYHEMLV-HPPLLLH--------PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDP 130 (246)
T ss_dssp HHHHHHHH-HHHHHHS--------SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGST
T ss_pred HHHHHHHh-hhHhhcC--------CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCC
Confidence 56888665 4455544 688999999999999999999887677999999999999999999954 2589
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++||+.||++.. ..+||+||+|+++++. |+..+++.+|
T Consensus 131 r~~i~~~Dg~~~l~~~~-------------------------------~~~yDvIi~D~~dp~~------~~~~l~t~ef 173 (246)
T PF01564_consen 131 RVRIIIGDGRKFLKETQ-------------------------------EEKYDVIIVDLTDPDG------PAPNLFTREF 173 (246)
T ss_dssp TEEEEESTHHHHHHTSS-------------------------------ST-EEEEEEESSSTTS------CGGGGSSHHH
T ss_pred ceEEEEhhhHHHHHhcc-------------------------------CCcccEEEEeCCCCCC------CcccccCHHH
Confidence 99999999999999865 1289999999987532 4555999999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEe--ecCC-ccEEEEEecC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEED-VNLVLFGLSS 717 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~~-~N~Vl~a~~~ 717 (759)
++.++++|+|+|++++|..+. .......+.++++++|+++..+. ++.. .+...|+..+
T Consensus 174 ~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s 236 (246)
T PF01564_consen 174 YQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASAS 236 (246)
T ss_dssp HHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEE
T ss_pred HHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEEe
Confidence 999999999999999998443 45667788899999999865544 4443 3334444433
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-21 Score=203.64 Aligned_cols=167 Identities=24% Similarity=0.339 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-----CCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----FTQD 578 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-----l~~~ 578 (759)
+.||+ |+++++++.+ +++.+||+||+|+|.+++.+.++.+..+|++|||||.|+++|++||. +.++
T Consensus 60 ~~Y~e-~l~h~~~~~~--------~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d 130 (283)
T PRK00811 60 FIYHE-MMTHVPLFAH--------PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDD 130 (283)
T ss_pred hhHHH-HhhhHHHhhC--------CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccC
Confidence 57887 5556666655 67889999999999999988877556699999999999999999983 3368
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHH
Q 004354 579 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 658 (759)
Q Consensus 579 ~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~ 658 (759)
+|++++++||++|++.. ..+||+||+|+..+. +|+..+++.+
T Consensus 131 ~rv~v~~~Da~~~l~~~--------------------------------~~~yDvIi~D~~dp~------~~~~~l~t~e 172 (283)
T PRK00811 131 PRVELVIGDGIKFVAET--------------------------------ENSFDVIIVDSTDPV------GPAEGLFTKE 172 (283)
T ss_pred CceEEEECchHHHHhhC--------------------------------CCcccEEEECCCCCC------CchhhhhHHH
Confidence 99999999999999763 268999999885442 3677899999
Q ss_pred HHHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEee--cC---CccEEEEEecC
Q 004354 659 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--EE---DVNLVLFGLSS 717 (759)
Q Consensus 659 fl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~~---~~N~Vl~a~~~ 717 (759)
|++.++++|+|||++++|..+. +......++++|+++|+++..+.. +. +....++|++.
T Consensus 173 f~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as~~ 238 (283)
T PRK00811 173 FYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFASKN 238 (283)
T ss_pred HHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchheeEEeecC
Confidence 9999999999999999997543 345667789999999999866653 22 23345778774
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=201.72 Aligned_cols=168 Identities=21% Similarity=0.331 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl----~~~~ 579 (759)
..||. |++++++..+ +++++||+||+|+|++++.+.++.+..+|++||||+.|+++|++||.. ..++
T Consensus 75 ~~Y~e-~l~h~~l~~~--------~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dp 145 (308)
T PLN02366 75 CAYQE-MITHLPLCSI--------PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDP 145 (308)
T ss_pred HHHHH-HHHHHHHhhC--------CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCC
Confidence 56766 6667777654 678999999999999999998884456999999999999999999942 2588
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++||++|+++.. +.+||+||+|++.+. .|+..+++.+|
T Consensus 146 Rv~vi~~Da~~~l~~~~-------------------------------~~~yDvIi~D~~dp~------~~~~~L~t~ef 188 (308)
T PLN02366 146 RVNLHIGDGVEFLKNAP-------------------------------EGTYDAIIVDSSDPV------GPAQELFEKPF 188 (308)
T ss_pred ceEEEEChHHHHHhhcc-------------------------------CCCCCEEEEcCCCCC------CchhhhhHHHH
Confidence 99999999999998653 257999999886553 26788999999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcC-ceEE--EeecC---CccEEEEEecC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFN-HLFC--LQLEE---DVNLVLFGLSS 717 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~-~v~~--~~~~~---~~N~Vl~a~~~ 717 (759)
++.++++|+|||+++.|..+. .......++++|+++|+ .+.. ..++. +....++|++.
T Consensus 189 ~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 189 FESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred HHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence 999999999999999876432 34556778999999994 5433 23332 33557778776
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-19 Score=192.26 Aligned_cols=170 Identities=16% Similarity=0.214 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-------
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 576 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~------- 576 (759)
+.||.+|+. .++..+ +++++||+||+|+|.+++.+.++.+..+|++|||||+|+++|+++|.++
T Consensus 134 ~iYHE~Lvh-p~m~~h--------~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~ 204 (374)
T PRK01581 134 QIYHEALVH-PIMSKV--------IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF 204 (374)
T ss_pred HHHHHHHHH-HHHHhC--------CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC
Confidence 458887664 444444 6789999999999998888888766679999999999999999976543
Q ss_pred CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh
Q 004354 577 QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 656 (759)
Q Consensus 577 ~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~ 656 (759)
.++|++++++||++|++... .+||+||+|+..+. . .++..+++
T Consensus 205 ~DpRV~vvi~Da~~fL~~~~--------------------------------~~YDVIIvDl~DP~--~---~~~~~LyT 247 (374)
T PRK01581 205 FDNRVNVHVCDAKEFLSSPS--------------------------------SLYDVIIIDFPDPA--T---ELLSTLYT 247 (374)
T ss_pred CCCceEEEECcHHHHHHhcC--------------------------------CCccEEEEcCCCcc--c---cchhhhhH
Confidence 58999999999999997643 57999999985432 1 24678999
Q ss_pred HHHHHHHHHccCcCcEEEEEecCCC--hhHHHHHHHHHHHhcCceEEEee--c--CCccEEEEEecCCC
Q 004354 657 GSFLLTVKDALSEQGLFIVNLVSRS--QATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSSES 719 (759)
Q Consensus 657 ~~fl~~~~~~L~~~Gilv~N~~~~~--~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~Vl~a~~~~~ 719 (759)
.+|++.|+++|+|||+|+++..+.. ......+.++|+++|..+..+.. + .+....++|++.+.
T Consensus 248 ~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~ 316 (374)
T PRK01581 248 SELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAY 316 (374)
T ss_pred HHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCcc
Confidence 9999999999999999999864432 22334567899999998665542 2 23466788877664
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.8e-18 Score=178.99 Aligned_cols=167 Identities=21% Similarity=0.304 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl----~~~~ 579 (759)
..||.. +++++++.+ +++.+||+||+|+|.++..+..+.+..++++||+|+.|++.|+++|.. ..++
T Consensus 56 ~~y~e~-l~~~~l~~~--------~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~ 126 (270)
T TIGR00417 56 FIYHEM-IAHVPLFTH--------PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDP 126 (270)
T ss_pred HHHHHH-hhhhHhhcC--------CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCC
Confidence 568764 455555544 567799999999999998888776667999999999999999999832 3578
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
+++++++||++|+++.. .+||+||+|...+. .|+..+++.+|
T Consensus 127 ~v~i~~~D~~~~l~~~~--------------------------------~~yDvIi~D~~~~~------~~~~~l~~~ef 168 (270)
T TIGR00417 127 RVDLQIDDGFKFLADTE--------------------------------NTFDVIIVDSTDPV------GPAETLFTKEF 168 (270)
T ss_pred ceEEEECchHHHHHhCC--------------------------------CCccEEEEeCCCCC------CcccchhHHHH
Confidence 99999999999998643 67999999876442 24677889999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEee--c---CCccEEEEEecC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--E---EDVNLVLFGLSS 717 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~---~~~N~Vl~a~~~ 717 (759)
++.++++|+|||++++|..+. .......+.++++++|+++..+.. + .+....++|++.
T Consensus 169 ~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~ 233 (270)
T TIGR00417 169 YELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKN 233 (270)
T ss_pred HHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECC
Confidence 999999999999999996443 245566778999999999765543 2 334667888873
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-17 Score=169.77 Aligned_cols=161 Identities=12% Similarity=0.058 Sum_probs=123.2
Q ss_pred ceeecCCcc-----chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHH
Q 004354 494 QLKVYHGYL-----ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL 568 (759)
Q Consensus 494 ~~~~d~~~L-----~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~v 568 (759)
.+.+| ... .+-||. |+++.+|+.| ++|++|||||+|.|+..+-+.++ |. +|+.||||++|+++
T Consensus 42 ~LvLD-~~~~te~dEfiYHE-mLvHppl~~h--------~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~ 109 (262)
T PRK00536 42 IAMLN-KQLLFKNFLHIESE-LLAHMGGCTK--------KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDS 109 (262)
T ss_pred EEEEe-eeeeecchhhhHHH-HHHHHHHhhC--------CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHH
Confidence 45666 433 355765 6667888877 89999999999999998888877 44 99999999999999
Q ss_pred HHhhc-----CCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCC
Q 004354 569 AEDYF-----GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 643 (759)
Q Consensus 569 A~~~F-----gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~ 643 (759)
|++|| ++ +|||+++++ ++.+.. .++||+||+|. .
T Consensus 110 ~k~~lP~~~~~~-~DpRv~l~~-----~~~~~~-------------------------------~~~fDVIIvDs--~-- 148 (262)
T PRK00536 110 FISFFPHFHEVK-NNKNFTHAK-----QLLDLD-------------------------------IKKYDLIICLQ--E-- 148 (262)
T ss_pred HHHHCHHHHHhh-cCCCEEEee-----hhhhcc-------------------------------CCcCCEEEEcC--C--
Confidence 99998 33 699999997 333321 25799999984 1
Q ss_pred CCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEe--ecCC-ccEEEEEecCC
Q 004354 644 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEED-VNLVLFGLSSE 718 (759)
Q Consensus 644 ~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~~-~N~Vl~a~~~~ 718 (759)
.+++|++.|+++|+|||+++...-+. .......+.++++++|+.+..+. ++.. ....++|++..
T Consensus 149 -----------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~vp~~g~wgf~~aS~~~ 217 (262)
T PRK00536 149 -----------PDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAPLRILSNKGYIYASFKT 217 (262)
T ss_pred -----------CChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEecCCCcchhhhheecCCC
Confidence 23789999999999999999886544 35666788999999999765443 3332 45577787653
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-16 Score=149.32 Aligned_cols=147 Identities=29% Similarity=0.462 Sum_probs=109.3
Q ss_pred ccccccCCCCHHHHHHHHhhcC-----CCCccc-cccchhhhHHHHHHhhcCC----CC-CCCCeEEEECCCcchhHHHH
Q 004354 18 LLQTLGDFTSKENWDKFFTIRG-----IGDSFE-WYAEWPQLRDPLISLIGAP----TS-SPPPQILVPGCGNSRLSEHL 86 (759)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~-----~~~~~e-W~~~~~~l~~~l~~~l~~~----~~-~~~~~ILDlGCG~G~ls~~L 86 (759)
|+.+ ..+.++||++.|..+. +++.-| |+++ +....+..|+... .. ....+|||+|||||.+...|
T Consensus 10 l~~S--~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~--~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L 85 (227)
T KOG1271|consen 10 LGQS--KLGTKSYWDAAYELELTNFREHGDEGEVWFGE--DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQL 85 (227)
T ss_pred cccc--ccchHHHHHHHHHHHHhhcccCCCccceecCC--cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHH
Confidence 5444 4688999999998653 233333 9996 4444455555331 11 23349999999999999999
Q ss_pred HHhCCCe-EEEEeCCHHHHHHHHHHhccCC-CC-cEEEEeecccCC------------CcccEEEeCCCCh-hHHHHHHH
Q 004354 87 YDAGFHG-ITNVDFSKVVISDMLRRNVRDR-SD-MRWRVMDMTSMQ------------GGLDALMEPELGH-KLGNQYLS 150 (759)
Q Consensus 87 ~~~G~~~-VtgIDiS~~~I~~a~~r~~~~~-~~-i~f~~~D~~~~~------------gtfD~Ii~~~~~~-~~~~~~l~ 150 (759)
++.||.. ++|+|+|+.+++.|+..++... ++ ++|.+.|+++.. |++|+|-.+.... ..+..++.
T Consensus 86 ~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d 165 (227)
T KOG1271|consen 86 AKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLD 165 (227)
T ss_pred HHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehh
Confidence 9999975 9999999999999887765443 33 999999999854 6777776554322 22578999
Q ss_pred HHHHhcccCcEEEEEEcC
Q 004354 151 EVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 151 ei~rvLkpGG~liiit~~ 168 (759)
.+.++|+|||+|++.+..
T Consensus 166 ~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 166 SVEKLLSPGGIFVITSCN 183 (227)
T ss_pred hHhhccCCCcEEEEEecC
Confidence 999999999999999864
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=174.65 Aligned_cols=168 Identities=17% Similarity=0.250 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-------
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 576 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~------- 576 (759)
..||..+. +.++..+ +++++||+||+|+|.++..+.++.+..+|++||+||+|+++|+++|.++
T Consensus 281 ~~y~e~l~-~~~l~~~--------~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~ 351 (521)
T PRK03612 281 YRYHEALV-HPAMAAS--------ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGAL 351 (521)
T ss_pred HHHHHHHH-HHHHhhC--------CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcccc
Confidence 44777644 4444443 5778999999999999988887633369999999999999999965332
Q ss_pred CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh
Q 004354 577 QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 656 (759)
Q Consensus 577 ~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~ 656 (759)
+++|++++++||++|+++.. ++||+||+|...+.. ..+..+++
T Consensus 352 ~dprv~vi~~Da~~~l~~~~--------------------------------~~fDvIi~D~~~~~~-----~~~~~L~t 394 (521)
T PRK03612 352 DDPRVTVVNDDAFNWLRKLA--------------------------------EKFDVIIVDLPDPSN-----PALGKLYS 394 (521)
T ss_pred CCCceEEEEChHHHHHHhCC--------------------------------CCCCEEEEeCCCCCC-----cchhccch
Confidence 46899999999999997643 579999999754321 11467899
Q ss_pred HHHHHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHh-cCceEEEe--ecCC-ccEEEEEecCC
Q 004354 657 GSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMV-FNHLFCLQ--LEED-VNLVLFGLSSE 718 (759)
Q Consensus 657 ~~fl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~v-F~~v~~~~--~~~~-~N~Vl~a~~~~ 718 (759)
.+|++.++++|+|||++++|..+. .......+.++++++ | .+..+. ++.. .....+|++.+
T Consensus 395 ~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~g~w~f~~as~~~ 461 (521)
T PRK03612 395 VEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPYHVNVPSFGEWGFVLAGAGA 461 (521)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEEEeCCCCcchhHHHeeeCCC
Confidence 999999999999999999997543 344456788999999 8 543332 3332 22356676653
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-15 Score=151.89 Aligned_cols=116 Identities=22% Similarity=0.376 Sum_probs=97.5
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~ 129 (759)
..++.+...+.. .++.+|||||||||.++..+++. |..+|+++|+|+.|++.++++..... .+++|+++|++++|
T Consensus 38 ~Wr~~~i~~~~~---~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP 114 (238)
T COG2226 38 LWRRALISLLGI---KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP 114 (238)
T ss_pred HHHHHHHHhhCC---CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC
Confidence 334445555443 47899999999999999999987 44579999999999999999986533 34999999999999
Q ss_pred ---CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 130 ---GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 130 ---gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++||+|.+....+.. .+++|+|++|+|||||+++++.+.++
T Consensus 115 f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 899999998765544 89999999999999999999999876
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-12 Score=150.94 Aligned_cols=106 Identities=22% Similarity=0.302 Sum_probs=83.7
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccc--CC---C
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS--MQ---G 130 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~--~~---g 130 (759)
.+...+.. .++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.+++.. ...++++++++|+.+ ++ +
T Consensus 28 ~il~~l~~---~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 28 EILSLLPP---YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred HHHhhcCc---cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccCCCCC
Confidence 34455543 356799999999999999999874 46999999999998876543 334679999999863 22 7
Q ss_pred cccEEEeCCCChhH----HHHHHHHHHHhcccCcEEEEEE
Q 004354 131 GLDALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 131 tfD~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~liiit 166 (759)
+||+|++....++. ...+++++.++|+|||++++..
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 89999997654432 6789999999999999998765
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=146.67 Aligned_cols=133 Identities=19% Similarity=0.335 Sum_probs=97.6
Q ss_pred HHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 004354 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 108 (759)
Q Consensus 29 ~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~ 108 (759)
+||+++|+... .-|... .....+..++......++.+|||+|||.|+.+..|+++|+. |+|+|+|+.+++.+.
T Consensus 1 ~~Wd~ry~~~~----~~w~~~--~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 1 EFWHERWQEGQ----IGFHQS--EVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFF 73 (213)
T ss_pred ChHHHHHhcCC----CCCccC--CCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHH
Confidence 48999997652 345432 22223333333211135679999999999999999999996 999999999999864
Q ss_pred HHhcc-------------CCCCcEEEEeecccCC----CcccEEEeCC----CChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 109 RRNVR-------------DRSDMRWRVMDMTSMQ----GGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 109 ~r~~~-------------~~~~i~f~~~D~~~~~----gtfD~Ii~~~----~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+.... ...++++.++|+.++. ++||.|+... .....+..+++.+.++|+|||+++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 74 AENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred HHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 43211 2346899999998876 6799988643 3334488899999999999999888876
Q ss_pred C
Q 004354 168 A 168 (759)
Q Consensus 168 ~ 168 (759)
.
T Consensus 154 ~ 154 (213)
T TIGR03840 154 D 154 (213)
T ss_pred E
Confidence 4
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.3e-14 Score=142.97 Aligned_cols=134 Identities=19% Similarity=0.331 Sum_probs=99.2
Q ss_pred CHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHH
Q 004354 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (759)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~ 106 (759)
+++||+++|+... .-|... ...+.+.+++......++.+|||+|||.|..+..|++.|+. |+|+|+|+.+++.
T Consensus 2 ~~~~Wd~rw~~~~----~~~~~~--~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~ 74 (218)
T PRK13255 2 DPDFWHEKWAENQ----IGFHQE--EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQ 74 (218)
T ss_pred CHhHHHHHHcCCC----CCCCCC--CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHH
Confidence 4679999997652 224322 23344555553222245679999999999999999999996 9999999999998
Q ss_pred HHHHhcc-------------CCCCcEEEEeecccCC----CcccEEEeCC----CChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 107 MLRRNVR-------------DRSDMRWRVMDMTSMQ----GGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 107 a~~r~~~-------------~~~~i~f~~~D~~~~~----gtfD~Ii~~~----~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
+.+.... ...++++.++|+.++. +.||+|+... .....+.++++.+.++|+|||+++++
T Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 75 FFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred HHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 7543211 1356899999999885 6899999533 34445899999999999999986665
Q ss_pred Ec
Q 004354 166 TL 167 (759)
Q Consensus 166 t~ 167 (759)
++
T Consensus 155 ~~ 156 (218)
T PRK13255 155 TL 156 (218)
T ss_pred EE
Confidence 54
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-14 Score=147.98 Aligned_cols=112 Identities=23% Similarity=0.376 Sum_probs=82.8
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC---
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ--- 129 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~--- 129 (759)
.+.+.+.. .++.+|||+|||||.++..+++. +. ..|+|+|+|+.|++.++++.... ..+++|+++|+++++
T Consensus 38 ~~~~~~~~---~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 38 KLIKLLGL---RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD 114 (233)
T ss_dssp HHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred HHHhccCC---CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence 34444433 56789999999999999999876 32 36999999999999999987543 358999999999998
Q ss_pred CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 130 GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 130 gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++||+|++....+.. ..+.++|++|+|||||+++++.++.|
T Consensus 115 ~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 899999997755543 78899999999999999999999876
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=125.94 Aligned_cols=98 Identities=26% Similarity=0.324 Sum_probs=82.6
Q ss_pred CCCeEEEECCCcchhHHHHHH--hCCCeEEEEeCCHHHHHHHHHHh--ccCCCCcEEEEeec-ccCC--CcccEEEeCC-
Q 004354 68 PPPQILVPGCGNSRLSEHLYD--AGFHGITNVDFSKVVISDMLRRN--VRDRSDMRWRVMDM-TSMQ--GGLDALMEPE- 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~--~G~~~VtgIDiS~~~I~~a~~r~--~~~~~~i~f~~~D~-~~~~--gtfD~Ii~~~- 139 (759)
|+.+|||+|||+|.++..+++ .+. +|+|+|+|+.+++.|+++. ....++++|++.|+ .... +.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence 467999999999999999999 444 5999999999999999998 33457899999999 3333 7899999987
Q ss_pred CC----h-hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 140 LG----H-KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 140 ~~----~-~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.. + ....++++.+.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22 2 237889999999999999999876
|
... |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-13 Score=138.81 Aligned_cols=136 Identities=14% Similarity=0.255 Sum_probs=106.0
Q ss_pred CCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHH
Q 004354 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (759)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~ 105 (759)
.+.+||+++|++.. .-|... .....+.+++......++.+||++|||.|..+.+|++.|+. |+|+|+|+.+|+
T Consensus 7 ~~~~fW~~rw~~~~----~~f~~~--~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~ 79 (226)
T PRK13256 7 NNNQYWLDRWQNDD----VGFCQE--SPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVL 79 (226)
T ss_pred CCHHHHHHHHhcCC----CCCccC--CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHH
Confidence 46789999999763 225444 23445555554433345689999999999999999999997 999999999999
Q ss_pred HHHHHhc-------------cCCCCcEEEEeecccCC------CcccEEEeCC----CChhHHHHHHHHHHHhcccCcEE
Q 004354 106 DMLRRNV-------------RDRSDMRWRVMDMTSMQ------GGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKF 162 (759)
Q Consensus 106 ~a~~r~~-------------~~~~~i~f~~~D~~~~~------gtfD~Ii~~~----~~~~~~~~~l~ei~rvLkpGG~l 162 (759)
.+.+.+. ....++++.++|+.+++ +.||+|+-.. .....+.++.+.+.++|+|||.+
T Consensus 80 ~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~l 159 (226)
T PRK13256 80 SFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQI 159 (226)
T ss_pred HHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEE
Confidence 8866421 12357899999999985 5899988643 44556999999999999999999
Q ss_pred EEEEcC
Q 004354 163 VCLTLA 168 (759)
Q Consensus 163 iiit~~ 168 (759)
+++++.
T Consensus 160 lll~~~ 165 (226)
T PRK13256 160 LLLVME 165 (226)
T ss_pred EEEEEe
Confidence 999873
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-13 Score=141.83 Aligned_cols=114 Identities=22% Similarity=0.267 Sum_probs=91.8
Q ss_pred HHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhc----cCCCCcEEEEeeccc
Q 004354 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNV----RDRSDMRWRVMDMTS 127 (759)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~----~~~~~i~f~~~D~~~ 127 (759)
+..+.+++.. .++.+|||+|||+|.++..+++. +. .+|+|+|+|+.|++.|+++.. ....+++++++|+.+
T Consensus 62 r~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 62 KRMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred HHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 3344444443 56789999999999999988875 43 379999999999999987642 123579999999998
Q ss_pred CC---CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 128 MQ---GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 128 ~~---gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++ ++||+|++....++. ...+++++.|+|||||+++++++..+
T Consensus 139 lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 139 LPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred CCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 87 789999997655543 78999999999999999999998754
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-13 Score=135.86 Aligned_cols=108 Identities=21% Similarity=0.338 Sum_probs=87.2
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--Ccc
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--GGL 132 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--gtf 132 (759)
.+.+.+.. .++.+|||+|||+|.++..|++.|+ +|+|+|+|+.+++.++++..... .++++.++|+.+++ +.|
T Consensus 21 ~l~~~l~~---~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 21 EVLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHhccc---CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 34445443 4568999999999999999999987 59999999999999988764433 45899999998765 789
Q ss_pred cEEEeCCCChh----HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 133 DALMEPELGHK----LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 133 D~Ii~~~~~~~----~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|+|++....++ ....+++++.++|+|||+++++++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 99999765432 378999999999999999776543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-13 Score=120.30 Aligned_cols=90 Identities=26% Similarity=0.437 Sum_probs=76.5
Q ss_pred EEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh--HHHH
Q 004354 73 LVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK--LGNQ 147 (759)
Q Consensus 73 LDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~--~~~~ 147 (759)
||+|||+|..+..|++.+..+|+++|+|+.+++.++++... ..+.+.++|+++++ ++||+|++....++ ...+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~ 78 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEA 78 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhCccccccccccccccceeeccCHHH
Confidence 89999999999999999556799999999999999888643 34669999999998 89999999875554 4999
Q ss_pred HHHHHHHhcccCcEEEE
Q 004354 148 YLSEVKRLLKSGGKFVC 164 (759)
Q Consensus 148 ~l~ei~rvLkpGG~lii 164 (759)
+++++.|+|||||++++
T Consensus 79 ~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 79 ALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCcCeEEeC
Confidence 99999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.5e-13 Score=140.07 Aligned_cols=156 Identities=20% Similarity=0.238 Sum_probs=119.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-------CCCCCCCeEEEEccHHHHHHhhcccCc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-------GFTQDKSLKVHITDGIKFVREMKSSSA 600 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-------gl~~~~rl~v~i~Da~~~l~~~~~~~~ 600 (759)
+...+|||+|+|.|...+-|.++-...+|+-||+||.|+++|++.- |--.|+|++|+++||.+|++..+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~---- 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA---- 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc----
Confidence 5678999999999999888888733669999999999999999554 22368999999999999999876
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 601 TDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
..||+||+|+-+++..+ -..+++.||+..++++|+++|++|+...+.
T Consensus 364 ----------------------------~~fD~vIVDl~DP~tps-----~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 364 ----------------------------DMFDVVIVDLPDPSTPS-----IGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred ----------------------------ccccEEEEeCCCCCCcc-----hhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 58999999996654221 467899999999999999999999987554
Q ss_pred --ChhHHHHHHHHHHHhcCceEEEe--ecC-CccEEEEEecCCCC
Q 004354 681 --SQATKDMVISRMKMVFNHLFCLQ--LEE-DVNLVLFGLSSESC 720 (759)
Q Consensus 681 --~~~~~~~v~~~l~~vF~~v~~~~--~~~-~~N~Vl~a~~~~~~ 720 (759)
.+...-.+.+++++.=-.++-+. ++. +..-.++|.+.+..
T Consensus 411 y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~~~~~ 455 (508)
T COG4262 411 YFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAPGDAD 455 (508)
T ss_pred ccCCceeeeehhHHHhCcceeeeeEEecCcccccceeecccccCC
Confidence 23344456788877654444333 333 33446777777643
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.6e-13 Score=132.17 Aligned_cols=100 Identities=29% Similarity=0.437 Sum_probs=82.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCC----C
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPE----L 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~----~ 140 (759)
.++.++||+|||.|+.+.+|++.|+. |+++|+|+.+++.+.+.+....-+++..+.|+.+.. +.||+|++.. .
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVSTVVFMFL 107 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEEESSGGGS
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEEEEEeccC
Confidence 35689999999999999999999996 999999999999998877666777999999998776 8899999743 2
Q ss_pred ChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 141 GHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 141 ~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
....+..+++.+...++|||++++.++
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 333488899999999999999998775
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-13 Score=139.48 Aligned_cols=101 Identities=24% Similarity=0.383 Sum_probs=91.2
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChhH
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHKL 144 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~ 144 (759)
++.+|||+|||-|.+++.|++.|+ +|||+|+|+.+|+.|+.++....-.++|.+..++++. ++||+|+|.+..++.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 678999999999999999999996 4999999999999999988777777889998888877 699999999876655
Q ss_pred --HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 145 --GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 145 --~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+..+++.+.+++||||.+++.|...
T Consensus 138 ~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 138 PDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 8889999999999999999999764
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=143.21 Aligned_cols=101 Identities=21% Similarity=0.378 Sum_probs=86.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~~ 140 (759)
.++.+|||||||+|.++..|++. |. +|+|+|+|+.+++.++++....+ .+++|+++|+.+++ ++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 46689999999999999999986 44 59999999999999988765433 46999999998876 89999999775
Q ss_pred ChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 141 GHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 141 ~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.++. ...+++++.|+|||||++++.++.
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 5443 788999999999999999998864
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-13 Score=138.30 Aligned_cols=134 Identities=24% Similarity=0.402 Sum_probs=98.1
Q ss_pred CHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHH
Q 004354 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (759)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~ 106 (759)
+.+||+++|++.. ..++.-...+.+...+.. +. ..++.+||+.|||.|.....|++.|+. |+|+|+|+.+|+.
T Consensus 2 ~~~~W~~~w~~~~--~~w~~~~~~p~L~~~~~~-l~---~~~~~rvLvPgCG~g~D~~~La~~G~~-VvGvDls~~Ai~~ 74 (218)
T PF05724_consen 2 DPEFWEERWQEGQ--TPWDQGEPNPALVEYLDS-LA---LKPGGRVLVPGCGKGYDMLWLAEQGHD-VVGVDLSPTAIEQ 74 (218)
T ss_dssp HHHHHHHHHHTT----TT--TTSTHHHHHHHHH-HT---TSTSEEEEETTTTTSCHHHHHHHTTEE-EEEEES-HHHHHH
T ss_pred CHHHHHHHHhcCC--CCCCCCCCCHHHHHHHHh-cC---CCCCCeEEEeCCCChHHHHHHHHCCCe-EEEEecCHHHHHH
Confidence 4689999999873 233333334445544444 22 256779999999999999999999995 9999999999999
Q ss_pred HHHHhcc-------------CCCCcEEEEeecccCC----CcccEEEeCC----CChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 107 MLRRNVR-------------DRSDMRWRVMDMTSMQ----GGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 107 a~~r~~~-------------~~~~i~f~~~D~~~~~----gtfD~Ii~~~----~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
+.+.... ...++++.++|+.+++ |+||+|+-.. .....+.++.+.+.++|+|||.++++
T Consensus 75 ~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 75 AFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred HHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 8654321 1235789999999987 7899999644 34456999999999999999996655
Q ss_pred Ec
Q 004354 166 TL 167 (759)
Q Consensus 166 t~ 167 (759)
++
T Consensus 155 ~l 156 (218)
T PF05724_consen 155 TL 156 (218)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=132.36 Aligned_cols=108 Identities=18% Similarity=0.258 Sum_probs=86.0
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--Cccc
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLD 133 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD 133 (759)
.+...+.. .++.+|||+|||+|.++..|++.|+. |+|+|+|+.+++.++++....+.++.+.++|+...+ ++||
T Consensus 21 ~l~~~~~~---~~~~~vLDiGcG~G~~a~~la~~g~~-V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 21 AVREAVKT---VAPCKTLDLGCGQGRNSLYLSLAGYD-VRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHhcc---CCCCcEEEeCCCCCHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 34455543 35679999999999999999999874 999999999999998876554445788888876544 7899
Q ss_pred EEEeCCCCh----hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 134 ALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 134 ~Ii~~~~~~----~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+|++....+ .....+++++.++|+|||+++++.+
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 999876443 2368899999999999999777654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.5e-13 Score=140.62 Aligned_cols=145 Identities=21% Similarity=0.279 Sum_probs=109.2
Q ss_pred ccccccccCCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC----C
Q 004354 16 TDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG----F 91 (759)
Q Consensus 16 ~~lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G----~ 91 (759)
+++|..........||.+.++.+ ..|.+.+.|..+...+...+.........+|||+|||+|.++..+++.. .
T Consensus 36 ~ll~~~~~~~~~~~d~~~~~~ar---~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~ 112 (272)
T PRK11088 36 NLLPVQHKRSKDPGDNKEMMQAR---RAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITT 112 (272)
T ss_pred EeccccccCCCCCCcCHHHHHHH---HHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccC
Confidence 66776555666677888888766 3444455566666666555543212355789999999999999988652 2
Q ss_pred CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 92 HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 92 ~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
..++|+|+|+.+++.|+++. +++.|.++|+.+++ ++||+|++.... ..++++.|+|||||++++++.+
T Consensus 113 ~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 113 MQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRLPFADQSLDAIIRIYAP-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred CeEEEECCCHHHHHHHHHhC----CCCeEEEeecccCCCcCCceeEEEEecCC-----CCHHHHHhhccCCCEEEEEeCC
Confidence 25999999999999887653 67999999999877 789999986542 3468999999999999999987
Q ss_pred chhh
Q 004354 169 ESHV 172 (759)
Q Consensus 169 ~~~~ 172 (759)
..|.
T Consensus 184 ~~~l 187 (272)
T PRK11088 184 PRHL 187 (272)
T ss_pred Ccch
Confidence 7654
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=7e-13 Score=131.49 Aligned_cols=136 Identities=18% Similarity=0.241 Sum_probs=96.9
Q ss_pred CCHHHHHHHHhhcCCCCcc--ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHH
Q 004354 26 TSKENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (759)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~--eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~ 103 (759)
.+.++|++.+... +...| .||... .....+...+.. ..-.++||+|||+|.++..|+.+ +.+++++|+|+.+
T Consensus 4 ~~~~~l~~~la~~-DPW~~~~~~YE~~-K~~~~l~aaLp~---~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~A 77 (201)
T PF05401_consen 4 DNYQLLNRELAND-DPWGFETSWYERR-KYRATLLAALPR---RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRA 77 (201)
T ss_dssp SHHHHHHHHHTSS-SGGGTTT-HHHHH-HHHHHHHHHHTT---SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHH
T ss_pred cHHHHHHHHhCCC-CCCCCCCCHHHHH-HHHHHHHHhcCc---cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHH
Confidence 3578999998876 23222 244431 112223333443 35578999999999999999988 6789999999999
Q ss_pred HHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCCh-----hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 104 ISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGH-----KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 104 I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~-----~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
|+.|++|.. ..++++|+++|+.+.. ++||+|++.+..+ .....++..+...|+|||.+++-+..
T Consensus 78 l~~Ar~Rl~-~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 78 LARARERLA-GLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp HHHHHHHTT-T-SSEEEEES-TTT---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHHHHhcC-CCCCeEEEECcCCCCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 999999985 4579999999997765 9999999987433 33778999999999999999999874
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-09 Score=127.04 Aligned_cols=112 Identities=16% Similarity=0.208 Sum_probs=82.9
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~--~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+||.+|.|+|+++..+... +..+|++||+++..++.|++++.+. ..++++++.+|+.+|++...
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~----------- 606 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAR----------- 606 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcC-----------
Confidence 479999999999999888875 3447999999999999999998332 22589999999999987642
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC----ChHHHHHHHHHccCcCcEEEEEe
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f----~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
.+||+||+|...-.....+ ...+ .-.+++..+.++|+|||+|++-.
T Consensus 607 ---------------------~~fDlIilDPP~f~~~~~~---~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 607 ---------------------EQFDLIFIDPPTFSNSKRM---EDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred ---------------------CCcCEEEECCCCCCCCCcc---chhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 5799999985332111000 0000 02457888889999999998754
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-12 Score=135.30 Aligned_cols=146 Identities=23% Similarity=0.358 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQD 578 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----gl~~~ 578 (759)
+.| +.|++++++..+ ++|++|||||.|.|...+-...|-..-+|..+|||..|+++.++|| |+ ++
T Consensus 105 ~~Y-qemi~~l~l~s~--------~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy-~~ 174 (337)
T KOG1562|consen 105 FAY-QEMIAHLALCSH--------PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY-EG 174 (337)
T ss_pred ccc-eeeeeccccccC--------CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc-CC
Confidence 445 568888888776 7899999999999987666555533349999999999999999999 65 68
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHH
Q 004354 579 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 658 (759)
Q Consensus 579 ~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~ 658 (759)
+++.+++|||..|++..+ .+.||+||+|. +|+.+ |...++...
T Consensus 175 ~~v~l~iGDG~~fl~~~~-------------------------------~~~~dVii~ds--sdpvg----pa~~lf~~~ 217 (337)
T KOG1562|consen 175 KKVKLLIGDGFLFLEDLK-------------------------------ENPFDVIITDS--SDPVG----PACALFQKP 217 (337)
T ss_pred CceEEEeccHHHHHHHhc-------------------------------cCCceEEEEec--CCccc----hHHHHHHHH
Confidence 999999999999999976 37899999966 44443 788899999
Q ss_pred HHHHHHHccCcCcEEEEEecCCChhHH----HHHHHHHHHhcCc
Q 004354 659 FLLTVKDALSEQGLFIVNLVSRSQATK----DMVISRMKMVFNH 698 (759)
Q Consensus 659 fl~~~~~~L~~~Gilv~N~~~~~~~~~----~~v~~~l~~vF~~ 698 (759)
+++.+++.|+++|+++..- .+-+++ ....+..+.+|+.
T Consensus 218 ~~~~v~~aLk~dgv~~~q~--ec~wl~~~~i~e~r~~~~~~f~~ 259 (337)
T KOG1562|consen 218 YFGLVLDALKGDGVVCTQG--ECMWLHLDYIKEGRSFCYVIFDL 259 (337)
T ss_pred HHHHHHHhhCCCcEEEEec--ceehHHHHHHHHHHHhHHHhcCc
Confidence 9999999999999988654 444444 4445556677874
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-12 Score=122.92 Aligned_cols=102 Identities=24% Similarity=0.348 Sum_probs=86.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC----CcccEEEeCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ----GGLDALMEPE 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~----gtfD~Ii~~~ 139 (759)
+.+.+|||+|||+|.++..|++. + ..+++|+|+|+.+++.|++++.. ..++++|.++|+++++ +.||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 35789999999999999999953 2 24699999999999999998754 3457999999999976 5899999987
Q ss_pred CChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 140 LGHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 140 ~~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
..++. ...+++++.++|++||.+++..+.
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 65544 778999999999999999999876
|
... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-12 Score=132.57 Aligned_cols=100 Identities=19% Similarity=0.280 Sum_probs=85.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
.+..+|||+|||+|.++..+.+.|. +|+++|+|+.+++.++++. ....|+++|+.+++ ++||+|+++...++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKD----AADHYLAGDIESLPLATATFDLAWSNLAVQW 115 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC----CCCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence 3567999999999999999988765 5999999999999887764 23578999998876 68999999876665
Q ss_pred H--HHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
. ...++.++.++|+|||.+++.++....
T Consensus 116 ~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 116 CGNLSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 4 789999999999999999999987643
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-12 Score=138.78 Aligned_cols=101 Identities=20% Similarity=0.234 Sum_probs=86.7
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
++.+|||||||+|.++..|++.|+ +|+|||+|+.+++.++++.... ..+++|+++|+.+++ ++||+|++....+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 456999999999999999998876 4999999999999998775432 247899999998876 7899999988665
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+. ...+++++.++|||||.+++.+...
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 54 8899999999999999999998754
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=128.10 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=93.1
Q ss_pred chhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeec
Q 004354 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDM 125 (759)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~ 125 (759)
.....+..+...+.. .++.+|||+|||+|.++..+++. +. .+|+|+|+|+.+++.++++... ..++++++++|+
T Consensus 29 ~~~~~~~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~ 105 (231)
T TIGR02752 29 RHKKWRKDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA 105 (231)
T ss_pred chHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech
Confidence 333444445555543 56789999999999999999876 32 3699999999999999887643 235789999999
Q ss_pred ccCC---CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 126 TSMQ---GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 126 ~~~~---gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
.+++ ++||+|++....++. ...+++++.++|+|||++++++..++
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 106 MELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred hcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 8765 789999987644433 67899999999999999999876654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=122.57 Aligned_cols=120 Identities=16% Similarity=0.025 Sum_probs=91.5
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
++.+|||+|||+|.++..++.. ...+|+++|+|+.+++.++++..... .+++++++|+.++. ++||+|++... .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--~ 122 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--A 122 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--c
Confidence 4789999999999999988864 23469999999999999988775543 35999999998876 68999999753 2
Q ss_pred HHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcccc-CCCceEEEEEe
Q 004354 144 LGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAI 191 (759)
Q Consensus 144 ~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~-~~~w~v~~~~~ 191 (759)
....+++.+.++|+|||+++++... +....+.... ..||.+.....
T Consensus 123 ~~~~~l~~~~~~LkpGG~lv~~~~~--~~~~~l~~~~~~~~~~~~~~~~ 169 (187)
T PRK00107 123 SLSDLVELCLPLLKPGGRFLALKGR--DPEEEIAELPKALGGKVEEVIE 169 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeCC--ChHHHHHHHHHhcCceEeeeEE
Confidence 3678999999999999999998643 2222222222 23888665333
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.7e-12 Score=127.16 Aligned_cols=124 Identities=18% Similarity=0.221 Sum_probs=95.5
Q ss_pred CCCCCCeEEEECCCcchhHHHHHHh-CC------CeEEEEeCCHHHHHHHHHHhccC----CCCcEEEEeecccCC---C
Q 004354 65 TSSPPPQILVPGCGNSRLSEHLYDA-GF------HGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQ---G 130 (759)
Q Consensus 65 ~~~~~~~ILDlGCG~G~ls~~L~~~-G~------~~VtgIDiS~~~I~~a~~r~~~~----~~~i~f~~~D~~~~~---g 130 (759)
.+.++.++||++||||.++..+++. +. .+|+.+||||.|+..+++|..+. .+.+.|+++|+++++ .
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 3467899999999999999999875 22 57999999999999999987432 245899999999999 8
Q ss_pred cccEEEeCCCCh--hHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEE
Q 004354 131 GLDALMEPELGH--KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHA 190 (759)
Q Consensus 131 tfD~Ii~~~~~~--~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~ 190 (759)
+||+........ ..+.+.+++++|+|||||+|.|..|.... ...+..+..+|.+.+..
T Consensus 177 s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~--~~~l~~fy~~ysf~Vlp 236 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVE--NEPLKWFYDQYSFDVLP 236 (296)
T ss_pred cceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccc--cHHHHHHHHhhhhhhhc
Confidence 999998865322 23899999999999999999999997532 12222232355555533
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-12 Score=132.93 Aligned_cols=98 Identities=24% Similarity=0.393 Sum_probs=85.6
Q ss_pred CCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCC--------CcEEEEeecccCCCcccEEEeCCC
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--------DMRWRVMDMTSMQGGLDALMEPEL 140 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~--------~i~f~~~D~~~~~gtfD~Ii~~~~ 140 (759)
+.+|||+|||+|.+++.|++.|. +|+|||+|+.+|+.|+++. ...| .++|.+.|++...+.||+|+|.+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~-~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHK-KMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhh-hcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 47899999999999999999986 4999999999999998884 3222 367888888888889999999997
Q ss_pred ChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 141 GHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 141 ~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.++. +..++..+.++|||||.+++.+..
T Consensus 168 leHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 168 LEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 7766 999999999999999999999864
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.6e-12 Score=132.50 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=87.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC----CcccEEEeCCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ----GGLDALMEPELG 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~----gtfD~Ii~~~~~ 141 (759)
++.+|||+|||+|.++..|++.|. +|+++|+|+.+++.|+++....+ .+++++++|+.++. ++||+|++....
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 567999999999999999999876 59999999999999988875432 56899999987653 789999998765
Q ss_pred hhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 142 HKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 142 ~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++. +..+++++.++|||||+++++.+...
T Consensus 123 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 123 EWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 544 78899999999999999998877654
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-12 Score=115.12 Aligned_cols=89 Identities=27% Similarity=0.409 Sum_probs=73.5
Q ss_pred EEEECCCcchhHHHHHHh---CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCC-C--
Q 004354 72 ILVPGCGNSRLSEHLYDA---GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPEL-G-- 141 (759)
Q Consensus 72 ILDlGCG~G~ls~~L~~~---G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~-~-- 141 (759)
|||+|||+|..+..+++. |. .+++|+|+|+.+++.++++......+++|+++|+.+++ ++||+|++... .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999987 32 57999999999999999988666679999999999987 79999999432 2
Q ss_pred --hhHHHHHHHHHHHhcccCc
Q 004354 142 --HKLGNQYLSEVKRLLKSGG 160 (759)
Q Consensus 142 --~~~~~~~l~ei~rvLkpGG 160 (759)
......+++++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 2338999999999999998
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=129.56 Aligned_cols=101 Identities=14% Similarity=0.229 Sum_probs=84.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCC-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELG- 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~- 141 (759)
.++.+|||||||+|..+..++.. +. +|+|+|+|+.+++.++++... ..++.|.++|+.+.+ ++||+|++....
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 67889999999999999988765 44 699999999999999887643 457999999998765 789999996532
Q ss_pred h---hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 142 H---KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 142 ~---~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
| .....++++++++|||||++++..+..
T Consensus 129 h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 129 HLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 2 247899999999999999999987643
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=121.54 Aligned_cols=123 Identities=14% Similarity=0.006 Sum_probs=90.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.++++..+. ..+++++++|+.++. ++||+|++.. ..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~--~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA--LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh--hh
Confidence 367999999999999999876542 46999999999999887776443 346999999998865 7999999975 22
Q ss_pred HHHHHHHHHHHhcccCcEEEEEEcCchhhh-hhhccccCCCceEEEEEeCC
Q 004354 144 LGNQYLSEVKRLLKSGGKFVCLTLAESHVL-GLLFPKFRFGWKMSVHAIPQ 193 (759)
Q Consensus 144 ~~~~~l~ei~rvLkpGG~liiit~~~~~~~-~~l~~~~~~~w~v~~~~~~~ 193 (759)
....+++.+.++|+|||++++......... ..+.+. ...|.++..++..
T Consensus 120 ~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~ 169 (181)
T TIGR00138 120 SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRK-CQVLGVEPLEVPP 169 (181)
T ss_pred CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHh-hhhcCceEeeccc
Confidence 366788999999999999998753322111 122221 2246666666544
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=134.28 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=87.4
Q ss_pred HHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHH--hccCCCCcEEEEeecccCC--Ccc
Q 004354 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR--NVRDRSDMRWRVMDMTSMQ--GGL 132 (759)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r--~~~~~~~i~f~~~D~~~~~--gtf 132 (759)
+..++.. ..+.+|||||||+|.++..++..|...|+|+|+|+.++.+++.. ......++.|+.+|+.+++ ++|
T Consensus 114 l~~~l~~---l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 114 VLPHLSP---LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHhhCC---CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 4445542 35689999999999999999999887899999999998765433 2222457999999998887 889
Q ss_pred cEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 133 DALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 133 D~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|+|+|....++. ...++++++++|+|||.+++.++
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999998765543 78999999999999999998764
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=130.63 Aligned_cols=114 Identities=18% Similarity=0.292 Sum_probs=96.1
Q ss_pred HHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCCCccc
Q 004354 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQGGLD 133 (759)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~gtfD 133 (759)
+...+..+...++.+|||||||.|.++.++++. |. +|+|+++|+++.+.+++++...+ .+++++..|..++.+.||
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fD 139 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFD 139 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccc
Confidence 334444455689999999999999999999988 44 59999999999999999876544 369999999999998899
Q ss_pred EEEeCCCChhH----HHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 134 ALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 134 ~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
.|++....++. ...+|+.++++|+|||++++-+...++
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 99998755443 889999999999999999998877654
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=131.50 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=83.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCCh---
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGH--- 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~--- 142 (759)
++.+|||+|||+|.++..|++.|+ +|+|+|+|+.+++.++++......++++.+.|+.... +.||+|++....+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCC
Confidence 346999999999999999999887 4999999999999998887665567889999987654 7899999976433
Q ss_pred -hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 143 -KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 143 -~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.....+++++.++|+|||+++++.
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 347889999999999999977764
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-11 Score=130.08 Aligned_cols=112 Identities=22% Similarity=0.305 Sum_probs=84.3
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCCCcc
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQGGL 132 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~gtf 132 (759)
.+..++..+...++.+|||||||.|.++..+++. |+ +|+||.+|+...+.+++++...+ ..+++.++|..+++++|
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 3445556666789999999999999999999998 87 49999999999999999886554 46899999999988999
Q ss_pred cEEEeCCCChh----HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 133 DALMEPELGHK----LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 133 D~Ii~~~~~~~----~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
|.|++....++ ....+|+.+.++|+|||++++-+..
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 99999774443 3789999999999999999876554
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=130.07 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=81.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
.++.+|||+|||+|.++..|++.. ..+|+|+|+|+.|++.++++ +++++++|+.++. ++||+|+++...++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 101 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWKPKPDTDVVVSNAALQW 101 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCCCCCCceEEEEehhhhh
Confidence 567899999999999999998873 23699999999999988653 5889999998765 78999999886666
Q ss_pred H--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
. ...++++++++|||||++++...
T Consensus 102 ~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 102 VPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 4 78899999999999999998754
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.9e-11 Score=118.44 Aligned_cols=102 Identities=18% Similarity=0.272 Sum_probs=84.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-CcccEEEeCCCCh---
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-GGLDALMEPELGH--- 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~--- 142 (759)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++......+++++++|+.+.. ++||+|+++...+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 3557899999999999999998876 6999999999999998887655567889999987655 8999999974211
Q ss_pred --------------------hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 143 --------------------KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 143 --------------------~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.....+++++.++|+|||+++++....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 115678999999999999999887543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=132.14 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=83.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHH--HhccCCCCcEEEEeecccCC--CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~--r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~ 142 (759)
.++.+|||+|||+|.++..++..|...|+|+|+|+.++.++.. +......++.+..+|+.+++ ..||+|+|....+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLY 199 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhh
Confidence 4678999999999999999998888789999999999876433 22223356888889988887 7899999988655
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+. +..++++++++|+|||.+++.++
T Consensus 200 H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 200 HRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred ccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 44 78899999999999999999875
|
Known examples to date are restricted to the proteobacteria. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=117.04 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=102.9
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccC-
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM- 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~- 128 (759)
..+..+...+.. .++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.++++.... ..+++++++|+...
T Consensus 18 ~~r~~~~~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~ 94 (187)
T PRK08287 18 EVRALALSKLEL---HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIEL 94 (187)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhc
Confidence 444455555543 4678999999999999999988743 36999999999999998876433 24688999887532
Q ss_pred CCcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchh--hhhhhccccCCCce-EEEEE--e------CCCCCC
Q 004354 129 QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH--VLGLLFPKFRFGWK-MSVHA--I------PQKSSS 197 (759)
Q Consensus 129 ~gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~--~~~~l~~~~~~~w~-v~~~~--~------~~~~~~ 197 (759)
.+.||+|++..... ....+++.+.++|+|||++++.....+. ....++... +|. ++++. + .+...-
T Consensus 95 ~~~~D~v~~~~~~~-~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK08287 95 PGKADAIFIGGSGG-NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKC--GVSELDCVQLQVSSLTPLGAGHYF 171 (187)
T ss_pred CcCCCEEEECCCcc-CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHC--CCCcceEEEEEEEeeeEcCcceee
Confidence 27899999865322 3567899999999999999886543222 122233222 331 12111 1 111112
Q ss_pred CCCceEEEEEEEe
Q 004354 198 EPSLQTFMVVADK 210 (759)
Q Consensus 198 ~~~~~~f~~v~~K 210 (759)
.+..|+|+++++|
T Consensus 172 ~~~~~~~~~~~~~ 184 (187)
T PRK08287 172 KPNNPTFIISCQK 184 (187)
T ss_pred ccCCCEEEEEEEc
Confidence 5677899999887
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=121.45 Aligned_cols=146 Identities=21% Similarity=0.313 Sum_probs=102.8
Q ss_pred CCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCC---eEEEEeCCHH
Q 004354 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFH---GITNVDFSKV 102 (759)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~---~VtgIDiS~~ 102 (759)
..+.||+.+|.... ..| +.+...+..-+-.++.. ..+...+|||+|||.|.....+.+.... .|+++|+||.
T Consensus 34 ~~~k~wD~fy~~~~--~rF--fkdR~wL~~Efpel~~~-~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~ 108 (264)
T KOG2361|consen 34 EASKYWDTFYKIHE--NRF--FKDRNWLLREFPELLPV-DEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR 108 (264)
T ss_pred chhhhhhhhhhhcc--ccc--cchhHHHHHhhHHhhCc-cccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChH
Confidence 36789999999873 222 23322233333333332 1122338999999999999999876221 4999999999
Q ss_pred HHHHHHHHhccCCCCcEEEEeecccCC-------CcccEEEeCC----CChhHHHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 103 VISDMLRRNVRDRSDMRWRVMDMTSMQ-------GGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 103 ~I~~a~~r~~~~~~~i~f~~~D~~~~~-------gtfD~Ii~~~----~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
+|+..+++......++...+.|++... +++|.|++.. .........+.+++++|||||.+++-.|+...
T Consensus 109 Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 109 AIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred HHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 999888775444445666677776543 8899888743 44555899999999999999999999998765
Q ss_pred hhhhh
Q 004354 172 VLGLL 176 (759)
Q Consensus 172 ~~~~l 176 (759)
....-
T Consensus 189 laqlR 193 (264)
T KOG2361|consen 189 LAQLR 193 (264)
T ss_pred HHHHh
Confidence 54433
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=124.50 Aligned_cols=107 Identities=21% Similarity=0.398 Sum_probs=90.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
.++++||.||.|+|..+.++...+| +.+|++||+||...++|+++| |+ +++++++++||.+++.+...
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~l~~------ 115 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPELAN------ 115 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHHHHH------
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHHHHh------
Confidence 4678999999999999999998887 479999999999999999998 66 57999999999999998752
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
......||+||+|++..++ .++|+.+.++|++||++++.
T Consensus 116 ---------------------~~~~~~fD~VFiDa~K~~y-------------~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 116 ---------------------DGEEGQFDFVFIDADKRNY-------------LEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp ---------------------TTTTTSEEEEEEESTGGGH-------------HHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------ccCCCceeEEEEcccccch-------------hhHHHHHhhhccCCeEEEEc
Confidence 1112579999999976643 67999999999999999985
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6e-11 Score=124.69 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=82.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHh---CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC-CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~---G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~-gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|.++..+++. ...+|+|+|+|+.|++.++++.... ..+++++++|+.+++ +.+|+|++...
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 35689999999999999888763 2236999999999999999987543 237999999998877 77999998654
Q ss_pred Chh----HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 141 GHK----LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 141 ~~~----~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.+. ....++++++++|+|||.+++.+.
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 332 367899999999999999999863
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-11 Score=121.27 Aligned_cols=128 Identities=16% Similarity=0.307 Sum_probs=104.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEE-ccHHHHHHhhcccCccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHI-TDGIKFVREMKSSSATD 602 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i-~Da~~~l~~~~~~~~~~ 602 (759)
..+++||.||.++|..+.++...+| +.++++||+||+..+.|+++| |+ ++++.++. +|+++.+....
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~--~~~i~~~~~gdal~~l~~~~------ 129 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV--DDRIELLLGGDALDVLSRLL------ 129 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC--cceEEEEecCcHHHHHHhcc------
Confidence 5789999999999999999999888 779999999999999999998 65 67899999 69999998732
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE-EecCCC
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NLVSRS 681 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~-N~~~~~ 681 (759)
...||+||+|++.+++ ++||+.+.++|+|||++|+ |+.-..
T Consensus 130 -------------------------~~~fDliFIDadK~~y-------------p~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 130 -------------------------DGSFDLVFIDADKADY-------------PEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred -------------------------CCCccEEEEeCChhhC-------------HHHHHHHHHHhCCCcEEEEeecccCC
Confidence 3789999999988864 7899999999999998887 654431
Q ss_pred ----h--hHHHHHHHHHHHhcCceEE
Q 004354 682 ----Q--ATKDMVISRMKMVFNHLFC 701 (759)
Q Consensus 682 ----~--~~~~~v~~~l~~vF~~v~~ 701 (759)
. .-.+..+..+++.+..+..
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~~~~~ 197 (219)
T COG4122 172 RVADPSIRDARTQVRGVRDFNDYLLE 197 (219)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHhh
Confidence 2 2334556666766664433
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-10 Score=117.51 Aligned_cols=119 Identities=14% Similarity=0.207 Sum_probs=89.0
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~ 123 (759)
.|......+...+..-+......++.+|||+|||+|.++..+++. +-..|+|+|+|+.|++.+.+++.. ..++.++.+
T Consensus 49 ~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-~~nv~~i~~ 127 (226)
T PRK04266 49 EWNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-RKNIIPILA 127 (226)
T ss_pred EECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-cCCcEEEEC
Confidence 465544445554544222233467889999999999999999886 223699999999999988776543 368999999
Q ss_pred ecccC------CCcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEE
Q 004354 124 DMTSM------QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 164 (759)
Q Consensus 124 D~~~~------~gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~lii 164 (759)
|+.+. ...||+|++.....+....+++++.++|||||++++
T Consensus 128 D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 128 DARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred CCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 98752 267999998654444456679999999999999999
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-11 Score=115.29 Aligned_cols=107 Identities=27% Similarity=0.448 Sum_probs=83.5
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-- 129 (759)
.+.+.+..+... ..++.+|||+|||+|.++..|.+.|+ +++|+|+|+.+++. ..+.....+.....
T Consensus 8 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 8 AYADLLERLLPR--LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RNVVFDNFDAQDPPFP 75 (161)
T ss_dssp CHHHHHHHHHTC--TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TTSEEEEEECHTHHCH
T ss_pred HHHHHHHHHhcc--cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hhhhhhhhhhhhhhcc
Confidence 344455555531 14688999999999999999998888 69999999999876 23444444433322
Q ss_pred -CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 130 -GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 130 -gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+.||+|+|....++. ...+++++.++|||||++++.+....
T Consensus 76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 899999998876665 89999999999999999999997643
|
... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.6e-11 Score=135.04 Aligned_cols=101 Identities=20% Similarity=0.313 Sum_probs=85.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
.++.+|||||||+|.++..|++. +. +|+|+|+|+.+++.|+++......+++|.++|+.+.+ ++||+|+|....+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDV-HVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 56789999999999999988876 44 6999999999999998876544457899999998765 6899999977554
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+. ...++++++|+|+|||++++.++.
T Consensus 344 h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 344 HIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred ccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 44 789999999999999999998764
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.2e-11 Score=124.62 Aligned_cols=96 Identities=23% Similarity=0.308 Sum_probs=82.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
.++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++. +++.|+.+|+.++. ++||+|+++...++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASWQPPQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhccCCCCCccEEEEccChhh
Confidence 567899999999999999998763 347999999999999888764 56899999997765 78999999887665
Q ss_pred H--HHHHHHHHHHhcccCcEEEEEE
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liiit 166 (759)
. ...+++++.++|+|||.+++..
T Consensus 106 ~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 106 LPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 4 7789999999999999998864
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-10 Score=115.50 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=103.6
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~ 127 (759)
.++......+.. .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++....+ .++.++++|+.+
T Consensus 27 ~~r~~~l~~l~~---~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 27 EIRALALSKLRL---RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHHHHcCC---CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence 344444444443 67889999999999999988764 3 2469999999999999988765443 578999999876
Q ss_pred CC----CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcccc-CCCceEEEEEeCCCCC------
Q 004354 128 MQ----GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAIPQKSS------ 196 (759)
Q Consensus 128 ~~----gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~-~~~w~v~~~~~~~~~~------ 196 (759)
.. +.||+|++... ......+++.+.++|+|||++++....... ........ ..+|..++..+.....
T Consensus 104 ~l~~~~~~~D~V~~~~~-~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 181 (198)
T PRK00377 104 ILFTINEKFDRIFIGGG-SEKLKEIISASWEIIKKGGRIVIDAILLET-VNNALSALENIGFNLEITEVIIAKGMKTKVG 181 (198)
T ss_pred hHhhcCCCCCEEEECCC-cccHHHHHHHHHHHcCCCcEEEEEeecHHH-HHHHHHHHHHcCCCeEEEEEehhhcccccCC
Confidence 42 68999998542 223678999999999999999875543332 22222222 2355555444432111
Q ss_pred --CCCCceEEEEEEEe
Q 004354 197 --SEPSLQTFMVVADK 210 (759)
Q Consensus 197 --~~~~~~~f~~v~~K 210 (759)
-...-|+|+++.+|
T Consensus 182 ~~~~~~npv~~~~~~~ 197 (198)
T PRK00377 182 TAMMTRNPIFIISGEK 197 (198)
T ss_pred cEeecCCCEEEEEEec
Confidence 13445777777654
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-11 Score=121.64 Aligned_cols=119 Identities=17% Similarity=0.175 Sum_probs=89.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeec-ccCC-----CcccEEEeCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM-TSMQ-----GGLDALMEPE 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~-~~~~-----gtfD~Ii~~~ 139 (759)
++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.++++..... +++.++++|+ ..++ ++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 56799999999999999998763 3469999999999999988775433 5799999999 4432 7899999854
Q ss_pred CChh----------HHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcccc-CCCceEE
Q 004354 140 LGHK----------LGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 187 (759)
Q Consensus 140 ~~~~----------~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~-~~~w~v~ 187 (759)
..++ ....+++++.++|+|||.+++.+.....+. .++... ..+|..+
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAE-YMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHH-HHHHHHHhCccccc
Confidence 3221 147899999999999999999886544333 233333 3467555
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.1e-11 Score=108.80 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=84.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
..+||.||.|.|.++..+.+.+|..+|++||++|.+++.|++.+ .....++++++.+|+ .+....
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------------- 67 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------------- 67 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT-------------
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc-------------
Confidence 46899999999999999999888999999999999999999998 223478999999998 332221
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+||+|+++..... .+ ...--...+|+.+++.|+|||+|+++.
T Consensus 68 -------------------~~~~D~v~~~~~~~~---~~---~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 68 -------------------LEPFDLVICSGFTLH---FL---LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -------------------SSCEEEEEECSGSGG---GC---CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCCCCEEEECCCccc---cc---cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 256999999551110 00 000113578999999999999999974
|
... |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.2e-11 Score=116.59 Aligned_cols=111 Identities=21% Similarity=0.305 Sum_probs=87.8
Q ss_pred HHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhccCCCC-cEEEEeecccCC--C
Q 004354 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFH-GITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQ--G 130 (759)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~-~VtgIDiS~~~I~~a~~r~~~~~~~-i~f~~~D~~~~~--g 130 (759)
..+.+++.. .+..+|||+|||+|.++..++..+.. .|+++|+|+.+++.++++....... +++...|+.+.. +
T Consensus 21 ~lL~~~l~~---~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~ 97 (170)
T PF05175_consen 21 RLLLDNLPK---HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDG 97 (170)
T ss_dssp HHHHHHHHH---HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTT
T ss_pred HHHHHHHhh---ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccccc
Confidence 355666654 35789999999999999999988654 6999999999999998887655444 999999987654 7
Q ss_pred cccEEEeCCCCh---h----HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 131 GLDALMEPELGH---K----LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 131 tfD~Ii~~~~~~---~----~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.||+|+++...+ . ...+++++..+.|+|||.++++...
T Consensus 98 ~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 98 KFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp CEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred ceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 999999986221 1 3789999999999999999776543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=119.43 Aligned_cols=101 Identities=21% Similarity=0.273 Sum_probs=86.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
.+.+|||+|||+|.++..+++.+. .+++++|+|+.+++.++++.. +++.++++|+.+.+ ++||+|++....++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLPLEDSSFDLIVSNLALQW 110 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCCCCCCceeEEEEhhhhhh
Confidence 347899999999999999998864 358999999999998887753 47899999998876 78999999876655
Q ss_pred H--HHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
. ...++.++.++|+|||.+++.++....
T Consensus 111 ~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 111 CDDLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 4 788999999999999999999876654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-10 Score=104.07 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=80.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC----CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ----GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~----gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.++++.... ..+++++..|+.... .+||+|++...
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 456799999999999999998863 347999999999999998876443 356888888876422 78999999653
Q ss_pred ChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 141 GHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 141 ~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.. ....+++++.++|+|||++++..+
T Consensus 98 ~~-~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 98 GG-LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ch-hHHHHHHHHHHHcCCCCEEEEEec
Confidence 32 356899999999999999998754
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=118.13 Aligned_cols=95 Identities=11% Similarity=-0.018 Sum_probs=75.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
.++.+|||+|||+|.++..|.+. +..+++|+|+|+.+++.|+++. +++.+.++|+.+.. ++||+|++....++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFDPFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccCCCCCCCEEEEEECChhhh
Confidence 35678999999999999999876 3456999999999999987764 46788999988732 79999999775433
Q ss_pred ----HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 144 ----LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 144 ----~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
...++++++.|++ ++++++..+
T Consensus 118 l~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 118 INPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred CCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 3678889999987 456666654
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=118.17 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=82.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCCh--
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGH-- 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~-- 142 (759)
.++.+|||+|||+|.++..++..+..+++++|+|+.+++.++++......++.++++|+.+.. +.||+|+++....
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCCCC
Confidence 467899999999999999998877767999999999999998877554456889999987643 7899999964110
Q ss_pred ---------------------hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 ---------------------KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ---------------------~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.....+++++.++|+|||+++++.-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1146788999999999999998653
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-10 Score=119.99 Aligned_cols=101 Identities=11% Similarity=0.046 Sum_probs=83.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC-CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG---FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G---~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~-gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|+++.... ..+++++++|+.+.+ ..+|+|++...
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 356799999999999999998752 236999999999999998886442 246899999999887 67999998765
Q ss_pred Chh----HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 141 GHK----LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 141 ~~~----~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.++ ....++++++++|+|||.+++...
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 443 267899999999999999998864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-08 Score=116.74 Aligned_cols=131 Identities=16% Similarity=0.096 Sum_probs=94.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
..+-+|.||.|.|.....+...+|+..+.+||+....+.-|-+...-..-.+++++.+|+..+....+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~------------ 414 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLP------------ 414 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcC------------
Confidence 34678999999999888899999999999999998877766554311122578999988766555543
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHH
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 688 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v 688 (759)
+..+|.|.+-- +||..--.-.-..+++++||+.+.+.|+|||.+- +.+.+..+.+.+
T Consensus 415 -------------------~~sv~~i~i~F--PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~--~~TD~~~y~~~~ 471 (506)
T PRK01544 415 -------------------NNSLDGIYILF--PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV--FASDIENYFYEA 471 (506)
T ss_pred -------------------cccccEEEEEC--CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE--EEcCCHHHHHHH
Confidence 35688888843 3432111112345899999999999999999877 445667766665
Q ss_pred HHHHHH
Q 004354 689 ISRMKM 694 (759)
Q Consensus 689 ~~~l~~ 694 (759)
+..+.+
T Consensus 472 ~~~~~~ 477 (506)
T PRK01544 472 IELIQQ 477 (506)
T ss_pred HHHHHh
Confidence 666554
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=131.77 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=81.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPELG 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~~ 141 (759)
++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|+++......+++++++|+.+++ ++||+|+++...
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 46899999999999998887752 246999999999999998876544557888999987754 789999987543
Q ss_pred hh---------------HHHHHHHHHHHhcccCcEEEEEE
Q 004354 142 HK---------------LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 142 ~~---------------~~~~~l~ei~rvLkpGG~liiit 166 (759)
|+ ...++++++.++|||||++++..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 32 36899999999999999999986
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-10 Score=117.29 Aligned_cols=103 Identities=21% Similarity=0.287 Sum_probs=85.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhcc--CCCCcEEEEeecccCC---CcccEEEeCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVR--DRSDMRWRVMDMTSMQ---GGLDALMEPE 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~--~~~~i~f~~~D~~~~~---gtfD~Ii~~~ 139 (759)
.++.+|||+|||+|.++..++..+ ..+++++|+++.+++.++++... ...++.+..+|+.+.+ ++||+|++..
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 456899999999999999998876 35799999999999999887644 2356899999998765 7899999866
Q ss_pred CChhH--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 140 LGHKL--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 140 ~~~~~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
..++. ...+++++.++|+|||.++++++..
T Consensus 130 ~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 130 GLRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 44332 7889999999999999999887644
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-10 Score=115.89 Aligned_cols=111 Identities=22% Similarity=0.346 Sum_probs=89.3
Q ss_pred HHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--
Q 004354 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-- 129 (759)
+..+...+.. .++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.++++.....+++++...|+.+.+
T Consensus 8 ~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 8 RARTFELLAV---QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCC
Confidence 3344445443 577899999999999999998763 247999999999999998874444567999999988765
Q ss_pred -CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 130 -GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 130 -gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
++||+|++....++. ...+++++.++|+|||.+++...
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 789999997654433 78899999999999999998764
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-10 Score=126.44 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=85.4
Q ss_pred CCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCChh-
Q 004354 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHK- 143 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~~- 143 (759)
..++.+|||||||+|.++..+++. |. +|+|+|+|+.+++.++++.. ...+++...|..++.++||+|++....++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDLNGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhcCCCCCEEEEeCchhhC
Confidence 367889999999999999999876 55 59999999999999988873 23588889998877789999998764433
Q ss_pred ---HHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 144 ---LGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 144 ---~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
....+++++.++|||||++++.++..+
T Consensus 242 g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 242 GPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred ChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 367899999999999999999877543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=114.85 Aligned_cols=103 Identities=18% Similarity=0.256 Sum_probs=83.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcE-EEEeecccCC----CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMR-WRVMDMTSMQ----GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~-f~~~D~~~~~----gtfD~Ii~~~~ 140 (759)
.....|||+|||||..-..+-......||++|.++.|-+.+.+.+.+. .+++. |++++.++++ +++|+|+|.-.
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 455678999999999987554332335999999999999998887544 45666 9999999998 89999998653
Q ss_pred --ChhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 141 --GHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 141 --~~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.+..+.+.|+++.|+|+|||+++++.+..
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 23448999999999999999999998763
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-10 Score=115.68 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=74.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChhH
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHKL 144 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~ 144 (759)
++.+|||+|||||.++..+++....+|+|+|+|+.|++.++++. .++++|+.+++ ++||+|++....++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 36799999999999999998873236999999999999887642 46789998887 899999998765543
Q ss_pred --HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 145 --GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 145 --~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
..+++++++|+|||. +.++.++.
T Consensus 124 ~d~~~~l~e~~RvLkp~--~~ile~~~ 148 (226)
T PRK05785 124 DNIEKVIAEFTRVSRKQ--VGFIAMGK 148 (226)
T ss_pred CCHHHHHHHHHHHhcCc--eEEEEeCC
Confidence 889999999999994 33444443
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.13 E-value=9e-12 Score=111.67 Aligned_cols=90 Identities=26% Similarity=0.350 Sum_probs=60.0
Q ss_pred EEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-----CcccEEEeCCCChhH-
Q 004354 73 LVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-----GGLDALMEPELGHKL- 144 (759)
Q Consensus 73 LDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~-----gtfD~Ii~~~~~~~~- 144 (759)
||+|||+|.++..+.+. ...+|+|+|+|+.|++.+++++.... ........+..+.. ++||+|++....++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999887 23469999999999988877775533 23334444333332 499999998876665
Q ss_pred -HHHHHHHHHHhcccCcEE
Q 004354 145 -GNQYLSEVKRLLKSGGKF 162 (759)
Q Consensus 145 -~~~~l~ei~rvLkpGG~l 162 (759)
+..++++++++|+|||++
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 889999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-10 Score=124.52 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=81.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++.. ..+++++.+|+.+++ ++||+|++....+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCCCCCCceeEEEEcChhh
Confidence 35679999999999999888765 33469999999999999888653 356899999998876 7899999976544
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+. ....++++.++|+|||+++++..
T Consensus 190 ~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 190 YWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 32 67899999999999999988753
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.6e-10 Score=123.41 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=87.6
Q ss_pred HHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeecccC
Q 004354 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSM 128 (759)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~----~~i~f~~~D~~~~ 128 (759)
.+.+.+++.. ....+|||+|||+|.++..+++.+. .+|+++|+|+.+++.++++..... .++++...|+...
T Consensus 217 trllL~~lp~---~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 217 ARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHHhCCc---ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 4556666654 3456999999999999999988743 369999999999999988774433 3578888887653
Q ss_pred C--CcccEEEeCCCCh-------hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 129 Q--GGLDALMEPELGH-------KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 129 ~--gtfD~Ii~~~~~~-------~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
. ++||+|+|+...| ....++++.+.++|+|||.++++..
T Consensus 294 ~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 294 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 3 5899999976433 2367899999999999999999963
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.6e-10 Score=121.91 Aligned_cols=140 Identities=19% Similarity=0.224 Sum_probs=100.7
Q ss_pred CCCCHHHHHHHHhhcC-----CCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEE
Q 004354 24 DFTSKENWDKFFTIRG-----IGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNV 97 (759)
Q Consensus 24 ~f~~~~yWd~~y~~~~-----~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgI 97 (759)
.|...+||.. |.... ....|.|..- ..-...+...+.. ....+|||+|||+|.++..+++.+. .+|+++
T Consensus 152 ~~~~~~~~~~-y~~~~l~i~~~pgvFs~~~l-D~gt~lLl~~l~~---~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~v 226 (342)
T PRK09489 152 VFDADKFWKE-YQVDGLTVKTLPGVFSRDGL-DVGSQLLLSTLTP---HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLS 226 (342)
T ss_pred CCccccccee-eecCCEEEEeCCCCCCCCCC-CHHHHHHHHhccc---cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEE
Confidence 3666677764 32211 1223444322 2233455555543 3456899999999999999998743 369999
Q ss_pred eCCHHHHHHHHHHhccCCCCcEEEEeecccCC-CcccEEEeCCCChh-------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 98 DFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-GGLDALMEPELGHK-------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 98 DiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~~-------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
|+|+.+++.++++........++...|+.... +.||+|+++...|+ ....+++++.+.|+|||.++++...
T Consensus 227 Dis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 227 DVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 99999999999887665556778888876544 88999999875443 3789999999999999999988743
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=112.18 Aligned_cols=102 Identities=22% Similarity=0.289 Sum_probs=85.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFH--GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~--~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~ 141 (759)
.++.+|||+|||+|..+..+++.+.. +++++|+++.+++.++++.. ...++++..+|+.+.+ ++||+|++....
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 46789999999999999999887653 79999999999999988764 4457899999998875 689999986544
Q ss_pred hh--HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 142 HK--LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 142 ~~--~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
++ ....+++++.++|+|||++++.++..
T Consensus 117 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 117 RNVTDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred CCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 33 27889999999999999999887643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-10 Score=119.17 Aligned_cols=102 Identities=16% Similarity=0.264 Sum_probs=83.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC---CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ---GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~---gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|..+..++.. |. .+|+++|+|+.+++.++++.... ..+++|.++|+.+++ ++||+|+++..
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 57889999999999988777654 44 26999999999999998876433 357899999998876 68999998765
Q ss_pred ChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 141 GHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 141 ~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.++. ...+++++.++|||||++++..+.
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 4432 678999999999999999998753
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-10 Score=117.62 Aligned_cols=120 Identities=19% Similarity=0.298 Sum_probs=89.9
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHH--HhccCCCCcEEEE
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRV 122 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~--r~~~~~~~i~f~~ 122 (759)
||..++.- ..+.+++.. -.+.+|||||||+|..+..|+..|.+.|+|+|.++...-+... ++......+.++-
T Consensus 97 EWrSd~KW--~rl~p~l~~---L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp 171 (315)
T PF08003_consen 97 EWRSDWKW--DRLLPHLPD---LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP 171 (315)
T ss_pred cccccchH--HHHHhhhCC---cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC
Confidence 57666432 235566543 3678999999999999999999999999999999987765332 3222222333333
Q ss_pred eecccCC--CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 123 MDMTSMQ--GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 123 ~D~~~~~--gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.-+++++ ++||+|+|.....+. +-.+|.+++..|+|||.+++-|+.-
T Consensus 172 lgvE~Lp~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 172 LGVEDLPNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred cchhhccccCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence 4566666 899999999876655 8899999999999999999999753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.7e-10 Score=112.63 Aligned_cols=108 Identities=19% Similarity=0.134 Sum_probs=82.6
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~ 127 (759)
.+...+.+.+.. .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++.... .+++++++|+.+
T Consensus 59 ~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 59 HMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence 344445555543 57789999999999999888875 2 2369999999999999988875543 248999999876
Q ss_pred CC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 128 MQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 128 ~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.. ++||+|++.....+ +..++.++|+|||++++..
T Consensus 136 ~~~~~~~fD~Ii~~~~~~~----~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 136 GLEKHAPFDAIIVTAAAST----IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCccCCCccEEEEccCcch----hhHHHHHhcCcCcEEEEEE
Confidence 43 78999999875433 3457889999999997754
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.5e-10 Score=117.73 Aligned_cols=107 Identities=15% Similarity=0.265 Sum_probs=90.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
..+++||.||.|+|..+.++...+| ..+|+++|+||+.+++|+++| |+ .++++++.||+.++|.+...
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl--~~~I~li~GdA~e~L~~l~~------ 188 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV--SHKVNVKHGLAAESLKSMIQ------ 188 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHh------
Confidence 4678999999999999998888775 558999999999999999998 76 46999999999999987531
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
+.....||+||+|++.... .++++.+.++|+|||+++++
T Consensus 189 ---------------------~~~~~~FD~VFIDa~K~~Y-------------~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 189 ---------------------NGEGSSYDFAFVDADKRMY-------------QDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred ---------------------cccCCCCCEEEECCCHHHH-------------HHHHHHHHHhcCCCcEEEEe
Confidence 0112579999999986543 78999999999999998875
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-09 Score=107.38 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=102.9
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM 128 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~ 128 (759)
...+..+..++.. .++.+|||+|||+|.++..++... ..+|+++|+|+.+++.++++.... ..+++++++|+.+.
T Consensus 26 ~~v~~~l~~~l~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 26 REVRLLLISQLRL---EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH
Confidence 3455556666653 577899999999999999988652 246999999999999998876443 35689999998652
Q ss_pred -C---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhh--hhhhcccc-CCCceEEEEEeCCCC-C----
Q 004354 129 -Q---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV--LGLLFPKF-RFGWKMSVHAIPQKS-S---- 196 (759)
Q Consensus 129 -~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~--~~~l~~~~-~~~w~v~~~~~~~~~-~---- 196 (759)
. ..+|.++.... .....+++++.++|+|||++++........ ....+... ..+|.+.-..+.... .
T Consensus 103 ~~~~~~~~d~v~~~~~--~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (196)
T PRK07402 103 LAQLAPAPDRVCIEGG--RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNRLETRGFSQ 180 (196)
T ss_pred HhhCCCCCCEEEEECC--cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhhcccccCcC
Confidence 2 45677766432 235789999999999999999998764432 22223222 224544332221110 0
Q ss_pred -CCCCceEEEEEEEe
Q 004354 197 -SEPSLQTFMVVADK 210 (759)
Q Consensus 197 -~~~~~~~f~~v~~K 210 (759)
-....|+|+++.+|
T Consensus 181 ~~~~~~pv~~~~~~~ 195 (196)
T PRK07402 181 VFAAVDPIFILSGEK 195 (196)
T ss_pred eeecCCCEEEEEEEe
Confidence 13556788877655
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-10 Score=115.30 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=81.2
Q ss_pred eEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC--CcccEEEeCCCChhH-
Q 004354 71 QILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ--GGLDALMEPELGHKL- 144 (759)
Q Consensus 71 ~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~~- 144 (759)
+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++.... ..+++++..|+...+ ++||+|++....++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~~ 81 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHIK 81 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhCC
Confidence 79999999999999998763 236999999999999998887443 346899999986654 889999987644433
Q ss_pred -HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 145 -GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 145 -~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
...+++++.++|+|||++++.++.
T Consensus 82 ~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 82 DKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 789999999999999999988753
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-10 Score=103.69 Aligned_cols=98 Identities=26% Similarity=0.377 Sum_probs=80.3
Q ss_pred CeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-----CcccEEEeCCCCh
Q 004354 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-----GGLDALMEPELGH 142 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-----gtfD~Ii~~~~~~ 142 (759)
.+|||+|||+|.++..+++.+..+++|+|+++.+++.++.++.... .+++++++|+.+.. +.||+|+++....
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 5899999999999999999984579999999999999988875542 46999999987764 8999999975211
Q ss_pred ----------hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 ----------KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ----------~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.....+++++.++|+|||.+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 1257889999999999999998863
|
... |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.8e-10 Score=113.64 Aligned_cols=131 Identities=19% Similarity=0.294 Sum_probs=89.7
Q ss_pred HHHHHHHHhhcCCCCcc--ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHH
Q 004354 28 KENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (759)
Q Consensus 28 ~~yWd~~y~~~~~~~~~--eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~ 105 (759)
.+.|+..|.... -..+ .+...+......+..++......+..+|||+|||+|.++..|++.+.. |+|+|+|+.+++
T Consensus 22 ~~~w~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~-v~~~D~s~~~i~ 99 (230)
T PRK07580 22 FDRWARIYSDAP-VSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAK-VVASDISPQMVE 99 (230)
T ss_pred cchHHHhhCcCc-hhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCE-EEEEECCHHHHH
Confidence 467888876531 1111 112222333344445543211245679999999999999999988765 999999999999
Q ss_pred HHHHHhccCC--CCcEEEEeecccCCCcccEEEeCCCChh----HHHHHHHHHHHhcccCc
Q 004354 106 DMLRRNVRDR--SDMRWRVMDMTSMQGGLDALMEPELGHK----LGNQYLSEVKRLLKSGG 160 (759)
Q Consensus 106 ~a~~r~~~~~--~~i~f~~~D~~~~~gtfD~Ii~~~~~~~----~~~~~l~ei~rvLkpGG 160 (759)
.++++..... .++.|.++|+....+.||+|++....++ ....+++++.+.+++++
T Consensus 100 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 100 EARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred HHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 9998875433 3789999996554488999999765422 36778888888765443
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.9e-10 Score=113.19 Aligned_cols=132 Identities=19% Similarity=0.269 Sum_probs=94.4
Q ss_pred HHHHHHHHhhcCCCCcccccc-----chhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHH
Q 004354 28 KENWDKFFTIRGIGDSFEWYA-----EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (759)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~-----~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~ 102 (759)
...|+..|... +...|.. ....+...+..++.. ...++.+|||+|||+|.++..+++.+. .|+|+|+|+.
T Consensus 14 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~ 88 (219)
T TIGR02021 14 FQRWARIYGSG---DPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQ 88 (219)
T ss_pred HHHHHHhhCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHH
Confidence 56788887643 1112211 112333445555541 124578999999999999999998765 5999999999
Q ss_pred HHHHHHHHhccCC--CCcEEEEeecccCCCcccEEEeCCCCh----hHHHHHHHHHHHhcccCcEEEE
Q 004354 103 VISDMLRRNVRDR--SDMRWRVMDMTSMQGGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVC 164 (759)
Q Consensus 103 ~I~~a~~r~~~~~--~~i~f~~~D~~~~~gtfD~Ii~~~~~~----~~~~~~l~ei~rvLkpGG~lii 164 (759)
+++.++++..... .++.|.++|+.+++++||+|++....+ .....+++++.+++++++.+.+
T Consensus 89 ~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 89 MVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999998875443 378999999988778899999865432 2367889999999987655554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=117.27 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=94.2
Q ss_pred ccccccc-cCCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CC
Q 004354 16 TDLLQTL-GDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FH 92 (759)
Q Consensus 16 ~~lP~~~-~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~ 92 (759)
+.||..+ .+=...+.|++.+... +.|.+..+...+.......... ..++.+|||+|||+|..+..|++.. ..
T Consensus 15 k~lp~~~~yd~~G~~lf~~i~~~p---eYy~tr~E~~il~~~~~~ia~~--~~~~~~iLELGcGtG~~t~~Ll~~l~~~~ 89 (301)
T TIGR03438 15 KTLPPKYFYDARGSELFEQICELP---EYYPTRTEAAILERHADEIAAA--TGAGCELVELGSGSSRKTRLLLDALRQPA 89 (301)
T ss_pred CCCCchhcccchHHHHHHHHHCCC---ccccHHHHHHHHHHHHHHHHHh--hCCCCeEEecCCCcchhHHHHHHhhccCC
Confidence 4555554 2223456788887643 2222222222222222222211 1355789999999999999998874 23
Q ss_pred eEEEEeCCHHHHHHHHHHhccCCCC--cEEEEeecccC-C--Ccc---cE--EEeCC----CChhHHHHHHHHHHHhccc
Q 004354 93 GITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSM-Q--GGL---DA--LMEPE----LGHKLGNQYLSEVKRLLKS 158 (759)
Q Consensus 93 ~VtgIDiS~~~I~~a~~r~~~~~~~--i~f~~~D~~~~-~--gtf---D~--Ii~~~----~~~~~~~~~l~ei~rvLkp 158 (759)
+|+++|+|+.|++.+++++....+. +.++++|+.+. + ..+ +. +++.. ........+|++++++|+|
T Consensus 90 ~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~p 169 (301)
T TIGR03438 90 RYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGP 169 (301)
T ss_pred eEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCC
Confidence 5999999999999998887654444 56789999874 2 333 33 33322 2233478899999999999
Q ss_pred CcEEEEEEc
Q 004354 159 GGKFVCLTL 167 (759)
Q Consensus 159 GG~liiit~ 167 (759)
||.|++...
T Consensus 170 gG~~lig~d 178 (301)
T TIGR03438 170 GGGLLIGVD 178 (301)
T ss_pred CCEEEEecc
Confidence 999987653
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-09 Score=112.67 Aligned_cols=162 Identities=13% Similarity=0.186 Sum_probs=108.4
Q ss_pred cccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHH-hCC--CeEEEEeCCHHHHHHHHHHhcc-C--CCC
Q 004354 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD-AGF--HGITNVDFSKVVISDMLRRNVR-D--RSD 117 (759)
Q Consensus 44 ~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~-~G~--~~VtgIDiS~~~I~~a~~r~~~-~--~~~ 117 (759)
|-+|..|..+.+.=...+......++.+|||||||.|.++..+.. ..+ ..++|+|+++.+++.|++.+.. . ..+
T Consensus 99 Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~r 178 (296)
T PLN03075 99 FPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKR 178 (296)
T ss_pred CCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCC
Confidence 456777766665544444332223678999999998866544333 222 3599999999999999988743 2 357
Q ss_pred cEEEEeecccCC---CcccEEEeCCCCh---hHHHHHHHHHHHhcccCcEEEEEEc-Cchhhhhhhcccc-CCCceEEEE
Q 004354 118 MRWRVMDMTSMQ---GGLDALMEPELGH---KLGNQYLSEVKRLLKSGGKFVCLTL-AESHVLGLLFPKF-RFGWKMSVH 189 (759)
Q Consensus 118 i~f~~~D~~~~~---gtfD~Ii~~~~~~---~~~~~~l~ei~rvLkpGG~liiit~-~~~~~~~~l~~~~-~~~w~v~~~ 189 (759)
++|.++|+.+.. +.||+|++..... ....++++++.+.|+|||.+++-+. +...++...+... ..||.+-..
T Consensus 179 V~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~ 258 (296)
T PLN03075 179 MFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSV 258 (296)
T ss_pred cEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEE
Confidence 999999998764 7899999984322 3489999999999999999999873 2223333333222 227777666
Q ss_pred EeCCCCCCCCCceEEEEEEEe
Q 004354 190 AIPQKSSSEPSLQTFMVVADK 210 (759)
Q Consensus 190 ~~~~~~~~~~~~~~f~~v~~K 210 (759)
..+..+ .--=+++++|
T Consensus 259 ~~P~~~-----v~Nsvi~~r~ 274 (296)
T PLN03075 259 FHPTDE-----VINSVIIARK 274 (296)
T ss_pred ECCCCC-----ceeeEEEEEe
Confidence 655421 2333455566
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.1e-09 Score=104.53 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=79.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCC-C--cEEEEeecccCC--CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-D--MRWRVMDMTSMQ--GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~-~--i~f~~~D~~~~~--gtfD~Ii~~~~~ 141 (759)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++...... + +.+++.|+.+.. ..||+|+++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 456799999999999999999885 4699999999999999887644332 2 889999986654 579999986421
Q ss_pred -----------------------hhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 142 -----------------------HKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 142 -----------------------~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
......+++++.++|+|||.++++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 11256789999999999999887754
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=111.44 Aligned_cols=108 Identities=17% Similarity=0.110 Sum_probs=83.9
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~--~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~ 128 (759)
.....+.+++.. .++.+|||+|||+|.++..|++... .+|+++|+++.+++.+++++... ..+++++++|+.+.
T Consensus 64 ~~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~ 140 (215)
T TIGR00080 64 HMVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC
Confidence 344455555544 6788999999999999999988732 24999999999999999887553 35799999998765
Q ss_pred C---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 129 Q---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 129 ~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
. +.||+|++.... ..+...+.+.|+|||++++..
T Consensus 141 ~~~~~~fD~Ii~~~~~----~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 141 WEPLAPYDRIYVTAAG----PKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CcccCCCCEEEEcCCc----ccccHHHHHhcCcCcEEEEEE
Confidence 3 689999987643 234566788999999988764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-09 Score=112.49 Aligned_cols=125 Identities=15% Similarity=0.246 Sum_probs=92.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCC--cEEEEeecccCC--CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQ--GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~--i~f~~~D~~~~~--gtfD~Ii~~~~~~ 142 (759)
.++.+|||+|||+|.++...++.|...++|+|++|.+++.++.+...+.-. +.....+..... ++||+|+++= ..
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-LA 239 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-LA 239 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-hH
Confidence 368899999999999999999999999999999999999999987654433 223333333333 6999999975 34
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcccc-CCCceEEEEEeCC
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAIPQ 193 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~-~~~w~v~~~~~~~ 193 (759)
.....+...+.+.|+|||++++...-..+ .....+.. ..+|.+..+...+
T Consensus 240 ~vl~~La~~~~~~lkpgg~lIlSGIl~~q-~~~V~~a~~~~gf~v~~~~~~~ 290 (300)
T COG2264 240 EVLVELAPDIKRLLKPGGRLILSGILEDQ-AESVAEAYEQAGFEVVEVLERE 290 (300)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeehHhH-HHHHHHHHHhCCCeEeEEEecC
Confidence 45778999999999999999999865443 22333333 3477766655443
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=116.39 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=76.6
Q ss_pred CCCeEEEECCCcch----hHHHHHHhCC------CeEEEEeCCHHHHHHHHHHhcc------------------------
Q 004354 68 PPPQILVPGCGNSR----LSEHLYDAGF------HGITNVDFSKVVISDMLRRNVR------------------------ 113 (759)
Q Consensus 68 ~~~~ILDlGCG~G~----ls~~L~~~G~------~~VtgIDiS~~~I~~a~~r~~~------------------------ 113 (759)
++.+|||+|||+|. ++..+.+.+. .+|+|+|+|+.||+.|++....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 4444554321 2599999999999999875311
Q ss_pred ----CCCCcEEEEeecccCC---CcccEEEeCCCCh----hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 114 ----DRSDMRWRVMDMTSMQ---GGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 114 ----~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~----~~~~~~l~ei~rvLkpGG~liiit 166 (759)
-...++|.++|+.+.+ +.||+|+|.+..+ ....+++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0136899999998875 7899999976543 336789999999999999999764
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.7e-10 Score=112.47 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=82.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC------CcccEEEeCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ------GGLDALMEPE 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~------gtfD~Ii~~~ 139 (759)
...+|||||||+|.++..++.... .+|+|+|+|+.+++.|+++.... ..+++++++|+.++. +++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999998732 36999999999999998876443 358999999997642 6899999865
Q ss_pred CChhH----------HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 140 LGHKL----------GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 140 ~~~~~----------~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
..+|. ...+++++.++|||||.+++.+-...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 33221 26799999999999999999986654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=117.76 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=78.7
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC------CCCcEEEEeec
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------RSDMRWRVMDM 125 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~------~~~i~f~~~D~ 125 (759)
.....+..++......++.+|||+|||+|.++..|++.|. +|+|+|+|+.|++.++++.... ..++.|.++|+
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 3334455555421112567999999999999999999876 5999999999999999886432 24578999998
Q ss_pred ccCCCcccEEEeCCCChhH----HHHHHHHHHHhcccCcEEE
Q 004354 126 TSMQGGLDALMEPELGHKL----GNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 126 ~~~~gtfD~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~li 163 (759)
.++.+.||+|+|....++. ...+++.+.+ +.+||.++
T Consensus 207 ~~l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 207 ESLSGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred hhcCCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 7766899999997653322 3456666665 34555533
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=114.93 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=94.9
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEE
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~ 122 (759)
.|..-...+...+..-+......++.+|||+|||+|.++.++++. | -..|+++|+|+.+++.+.+.+. ..+++.++.
T Consensus 109 ~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~ 187 (293)
T PTZ00146 109 VWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPII 187 (293)
T ss_pred eeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEE
Confidence 587776777777766555555578899999999999999999987 2 2369999999988776666543 337899999
Q ss_pred eecccCC------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 123 MDMTSMQ------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 123 ~D~~~~~------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
.|+.... +.+|+|++.....+....++.++.++|||||.|++.
T Consensus 188 ~Da~~p~~y~~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 188 EDARYPQKYRMLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCccChhhhhcccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 9986531 789999998765566777888999999999999984
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-09 Score=109.39 Aligned_cols=135 Identities=16% Similarity=0.111 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHH
Q 004354 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (759)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I 104 (759)
|-...||+..|......-...-+...+.+...+..++.. .++.+|||+|||+|.++..|+..+ .+++++|+++.++
T Consensus 38 f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~ 113 (212)
T PRK00312 38 FVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQ 113 (212)
T ss_pred cCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHH
Confidence 444556776676442110000111234455555566554 678899999999999999887774 4699999999999
Q ss_pred HHHHHHhccC-CCCcEEEEeecccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 105 SDMLRRNVRD-RSDMRWRVMDMTSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 105 ~~a~~r~~~~-~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+.+++++... ..++++.++|..+.. ++||+|++....+ .+.+.+.+.|+|||++++...
T Consensus 114 ~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~----~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 114 WEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAP----EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCch----hhhHHHHHhcCCCcEEEEEEc
Confidence 9998887543 346899999986542 7899999976443 345667899999999988764
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.2e-09 Score=107.92 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=75.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----------Cccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-F-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------GGLD 133 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----------gtfD 133 (759)
.++.+|||+|||+|.++..+++.. . ..|+|||+++ | ...++++++++|+++.. ++||
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 467899999999999999998873 2 3699999998 1 12357999999998842 6899
Q ss_pred EEEeCCCChh-------------HHHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 134 ALMEPELGHK-------------LGNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 134 ~Ii~~~~~~~-------------~~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
+|+++...++ ....+++++.++|+|||.|++..+....+
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~ 171 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGF 171 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCH
Confidence 9999653211 13578999999999999999988765543
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.7e-09 Score=110.56 Aligned_cols=97 Identities=20% Similarity=0.250 Sum_probs=75.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeecccCCCcccEEEeCCCChhH
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQGGLDALMEPELGHKL 144 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~--~i~f~~~D~~~~~gtfD~Ii~~~~~~~~ 144 (759)
.++.+|||+|||+|.++..++..|...|+|+|+|+.+++.++++.....- .+.+...| .+||+|+++.. ...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----~~fD~Vvani~-~~~ 191 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----LKADVIVANIL-ANP 191 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----CCcCEEEEcCc-HHH
Confidence 46789999999999999988888877799999999999999888754332 12222221 26999999753 334
Q ss_pred HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 145 GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 145 ~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
...++.++.++|+|||++++..+..
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECcH
Confidence 6788999999999999999987654
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-09 Score=110.15 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=84.7
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecc
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMT 126 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~ 126 (759)
.+.+...+...+.. .++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.+++++...+ .+++++++|+.
T Consensus 61 ~p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 61 AIHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGT 137 (212)
T ss_pred cHHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc
Confidence 34455555555554 67899999999999999988876 32 369999999999999998875433 47999999987
Q ss_pred cCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 127 SMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 127 ~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
... +.||+|++....+ .+...+.+.|+|||++++..
T Consensus 138 ~~~~~~~~fD~I~~~~~~~----~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 138 LGYEENAPYDRIYVTAAGP----DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCCCcCCCcCEEEECCCcc----cchHHHHHhhCCCcEEEEEE
Confidence 643 7899999976543 23456777999999988753
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.4e-10 Score=110.78 Aligned_cols=97 Identities=21% Similarity=0.271 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
....+|.|+|||+|..++.|+++ .-..|+|+|.|+.||+.|+++. ++++|..+|+.++. ...|+++++...+|
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~p~~~~dllfaNAvlqW 104 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWKPEQPTDLLFANAVLQW 104 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcCCCCccchhhhhhhhhh
Confidence 56789999999999999999988 3346999999999999997775 89999999999998 68999999998887
Q ss_pred H--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
. -..+|..+...|.|||.+.+-.-
T Consensus 105 lpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 105 LPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred ccccHHHHHHHHHhhCCCceEEEECC
Confidence 6 67889999999999999987753
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.9e-09 Score=109.25 Aligned_cols=125 Identities=17% Similarity=0.164 Sum_probs=96.3
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCc-EEEEeecccCC-
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQ- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i-~f~~~D~~~~~- 129 (759)
=.+++.+.+.. ....+|||+|||.|.++..|++... ..++-+|+|..+++.+++++..+.... .+...|+.+..
T Consensus 146 GS~lLl~~l~~---~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~ 222 (300)
T COG2813 146 GSRLLLETLPP---DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE 222 (300)
T ss_pred HHHHHHHhCCc---cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccc
Confidence 34566666654 4566999999999999999998853 479999999999999999886655544 56677765544
Q ss_pred CcccEEEeCCCChh-------HHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcccc
Q 004354 130 GGLDALMEPELGHK-------LGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 180 (759)
Q Consensus 130 gtfD~Ii~~~~~~~-------~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~ 180 (759)
+.||+|+|++..|. ...++++...+.|++||.+.++..+.......+-+.|
T Consensus 223 ~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F 280 (300)
T COG2813 223 GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF 280 (300)
T ss_pred ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence 89999999874442 3679999999999999999999876554444444433
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=113.19 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=90.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
..+++||.||.+.|..+.++...+| ..+|+++|+||...++|+++| |+ .+++++++|||.++|.+....
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~--~~~I~~~~G~a~e~L~~l~~~----- 150 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPVLDQMIED----- 150 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeccHHHHHHHHHhc-----
Confidence 4678999999999988888877664 569999999999999999999 66 579999999999999886410
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE-Eec
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NLV 678 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~-N~~ 678 (759)
......||+||+|++...+ ..+|+.+.++|++||++++ |+.
T Consensus 151 ---------------------~~~~~~fD~iFiDadK~~Y-------------~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 151 ---------------------GKYHGTFDFIFVDADKDNY-------------INYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred ---------------------cccCCcccEEEecCCHHHh-------------HHHHHHHHHhcCCCeEEEEcCCC
Confidence 0012579999999986532 6799999999999999887 553
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.02 E-value=4e-09 Score=112.92 Aligned_cols=123 Identities=15% Similarity=0.253 Sum_probs=87.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-CcccEEEeCCCChhHH
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-GGLDALMEPELGHKLG 145 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~~~~ 145 (759)
.++.+|||+|||+|.++...++.|.++|+|+|++|.+++.+++++..++-.-.+......+.. +.||+|+++= .....
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI-~~~vL 238 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVANI-LADVL 238 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEEES--HHHH
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEECC-CHHHH
Confidence 357899999999999999999999999999999999999999987655543344433333333 8999999864 33446
Q ss_pred HHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEe
Q 004354 146 NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 191 (759)
Q Consensus 146 ~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~ 191 (759)
..++..+.++|+|||++++..+-.... ..+...+..+|.+.....
T Consensus 239 ~~l~~~~~~~l~~~G~lIlSGIl~~~~-~~v~~a~~~g~~~~~~~~ 283 (295)
T PF06325_consen 239 LELAPDIASLLKPGGYLILSGILEEQE-DEVIEAYKQGFELVEERE 283 (295)
T ss_dssp HHHHHHCHHHEEEEEEEEEEEEEGGGH-HHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHhhCCCCEEEEccccHHHH-HHHHHHHHCCCEEEEEEE
Confidence 788999999999999999987754322 222233323676654443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-09 Score=114.43 Aligned_cols=150 Identities=13% Similarity=0.179 Sum_probs=105.5
Q ss_pred CCCCeEEEEccccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC--CCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG--FTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg--l~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
..+.+|+.||.|.| +...++..++|..+++.+|+||++++.||+++. ..-.++++++.+|+.+....
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~--------- 192 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES--------- 192 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc---------
Confidence 36789999999966 344455567899999999999999999999983 22367999999999885211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
..+||+|++++-- +|.-+. -.++|+.+.+.|+|||+|++=.......
T Consensus 193 ------------------------l~~FDlVF~~ALi-----~~dk~~----k~~vL~~l~~~LkPGG~Lvlr~~~G~r~ 239 (296)
T PLN03075 193 ------------------------LKEYDVVFLAALV-----GMDKEE----KVKVIEHLGKHMAPGALLMLRSAHGARA 239 (296)
T ss_pred ------------------------cCCcCEEEEeccc-----cccccc----HHHHHHHHHHhcCCCcEEEEecccchHh
Confidence 2569999998521 110001 1789999999999999999876322222
Q ss_pred H-HHHHHHHHHHhcCceEEEeecCC-ccEEEEEecCCC
Q 004354 684 T-KDMVISRMKMVFNHLFCLQLEED-VNLVLFGLSSES 719 (759)
Q Consensus 684 ~-~~~v~~~l~~vF~~v~~~~~~~~-~N~Vl~a~~~~~ 719 (759)
+ +..+-...-+-|..+..++..++ +|.|+|+.+...
T Consensus 240 ~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~~ 277 (296)
T PLN03075 240 FLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPGG 277 (296)
T ss_pred hcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeecC
Confidence 2 22222222337777666665554 699999988653
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=112.35 Aligned_cols=108 Identities=16% Similarity=0.288 Sum_probs=88.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
..+++||.||.|+|..+.++....+ ..+|+++|+||..+++|+++| |+ +++++++.+|+.+++.+...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl--~~~i~~~~gda~~~L~~l~~------ 138 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV--DHKINFIQSDALSALDQLLN------ 138 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEccHHHHHHHHHh------
Confidence 4678999999999988777777654 569999999999999999998 65 47899999999999987641
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE-Ee
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NL 677 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~-N~ 677 (759)
.....+||+|++|++.... .++++.+.++|+|||++++ |+
T Consensus 139 ---------------------~~~~~~fD~VfiDa~k~~y-------------~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 139 ---------------------NDPKPEFDFAFVDADKPNY-------------VHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred ---------------------CCCCCCCCEEEECCCHHHH-------------HHHHHHHHHhcCCCeEEEEEcC
Confidence 0013579999999875422 5789999999999998886 54
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.1e-09 Score=115.45 Aligned_cols=115 Identities=19% Similarity=0.198 Sum_probs=89.1
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC--
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~-- 129 (759)
+...+...... .++.+|||+|||+|.++..++..|. .++|+|+++.|++.+++++... ..++.+.++|+.+++
T Consensus 170 la~~~~~l~~~---~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~ 245 (329)
T TIGR01177 170 LARAMVNLARV---TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS 245 (329)
T ss_pred HHHHHHHHhCC---CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc
Confidence 44444444433 5678999999999999988877766 4999999999999988876543 235789999999887
Q ss_pred -CcccEEEeCCC--------Ch---hHHHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 130 -GGLDALMEPEL--------GH---KLGNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 130 -gtfD~Ii~~~~--------~~---~~~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
+.||+|+++.. .+ .....+++++.++|+|||+++++......
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRID 299 (329)
T ss_pred cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence 78999999641 11 22688999999999999999988765443
|
This family is found exclusively in the Archaea. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=114.21 Aligned_cols=102 Identities=16% Similarity=0.304 Sum_probs=81.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-gtfD~Ii~~~~~~~ 143 (759)
.++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.++++..... ..+.+...|..... +.||+|+++.. ..
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~-~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANIL-AE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecC-HH
Confidence 3568999999999999999988888789999999999999988775433 23555655543333 78999999754 33
Q ss_pred HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 144 LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 144 ~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
....++.++.++|+|||++++..+..
T Consensus 237 ~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 237 VIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 46689999999999999999987654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-08 Score=105.81 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=116.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||.|.|+++.+|.+..+..+|++||+++++.+.|++...+. ..+|++|+++|--+|.+...
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~---------- 112 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV---------- 112 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc----------
Confidence 4578999999999999999999988899999999999999999998653 46899999999999876654
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCC-cCCCC---------CChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMT-CPAAD---------FVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~s-cPp~~---------f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+||+||+.. +-...+-. |+.+. ..-+++++.++.+|+|+|.|.+=
T Consensus 113 ---------------------~~~fD~Ii~NP--Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 113 ---------------------FASFDLIICNP--PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred ---------------------ccccCEEEeCC--CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 24799999833 21111222 44433 33578999999999999998854
Q ss_pred ecCCChhHHHHHHHHHHH-hcCc---eEEEe-ecCCccEEEEEecCCCC
Q 004354 677 LVSRSQATKDMVISRMKM-VFNH---LFCLQ-LEEDVNLVLFGLSSESC 720 (759)
Q Consensus 677 ~~~~~~~~~~~v~~~l~~-vF~~---v~~~~-~~~~~N~Vl~a~~~~~~ 720 (759)
.|...+ ..++..|++ -|.- ++.++ .....|.||+.......
T Consensus 170 --~r~erl-~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 170 --HRPERL-AEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred --ecHHHH-HHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCCC
Confidence 455444 357888877 3442 23332 24567899988766543
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.4e-09 Score=107.34 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=106.5
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc--CCCCcEEEEeecccCC---
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR--DRSDMRWRVMDMTSMQ--- 129 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~--~~~~i~f~~~D~~~~~--- 129 (759)
++..+... ....+|||+|||+|.++..++++ ....|++||+.+.+.+.|++.... ...+++++++|+.++.
T Consensus 35 LL~~~~~~---~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 35 LLAAFAPV---PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHhhccc---ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 34455543 45789999999999999999987 435799999999999999887643 3468999999999887
Q ss_pred --CcccEEEeCCC------C----------hh----HHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCC-CceE
Q 004354 130 --GGLDALMEPEL------G----------HK----LGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF-GWKM 186 (759)
Q Consensus 130 --gtfD~Ii~~~~------~----------~~----~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~-~w~v 186 (759)
.+||+|+|++. . ++ ..+.+++...++|||||++.++.- +..+..++..... +|..
T Consensus 112 ~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r--~erl~ei~~~l~~~~~~~ 189 (248)
T COG4123 112 VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR--PERLAEIIELLKSYNLEP 189 (248)
T ss_pred cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec--HHHHHHHHHHHHhcCCCc
Confidence 67999999751 0 11 178999999999999999998873 4444444444422 5554
Q ss_pred EEEEeCCCCCCCCCceEEEEEEEeCCC
Q 004354 187 SVHAIPQKSSSEPSLQTFMVVADKENS 213 (759)
Q Consensus 187 ~~~~~~~~~~~~~~~~~f~~v~~K~~~ 213 (759)
.-...-.... ......-++.+.|...
T Consensus 190 k~i~~V~p~~-~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 190 KRIQFVYPKI-GKAANRVLVEAIKGGK 215 (248)
T ss_pred eEEEEecCCC-CCcceEEEEEEecCCC
Confidence 4333322211 2234445555566555
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=114.68 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=101.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--C-----CCcEEEEeecccCC---------C
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--R-----SDMRWRVMDMTSMQ---------G 130 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~-----~~i~f~~~D~~~~~---------g 130 (759)
++...+|++|||-|..+...-+.|...++|+||+++.|++|++|+... . -.+.|+++|.+.-. .
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 367889999999999999998889989999999999999999987432 1 13688999876543 3
Q ss_pred cccEEEeCCCCh------hHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeCC
Q 004354 131 GLDALMEPELGH------KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 193 (759)
Q Consensus 131 tfD~Ii~~~~~~------~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~ 193 (759)
.||+|-|....| ..+..+++++.+.|+|||+||........++..+-......|...++.+..
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y 264 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTY 264 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEee
Confidence 499999965333 348899999999999999999988777777777666544478888866654
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=111.51 Aligned_cols=106 Identities=14% Similarity=0.094 Sum_probs=86.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccC----C-CcccEEEeCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM----Q-GGLDALMEPE 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~----~-gtfD~Ii~~~ 139 (759)
..+..+||||||+|.++..++.... .+++|+|+++.+++.+.+++... ..++.++++|+..+ + +++|.|+++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 3566899999999999999998743 46999999999999998887543 46899999998654 2 8999999976
Q ss_pred CChhH--------HHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 140 LGHKL--------GNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 140 ~~~~~--------~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
..+|. ...+++++.|+|+|||.+.+.|-..+.+
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 44442 3689999999999999999998766544
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=118.94 Aligned_cols=111 Identities=22% Similarity=0.228 Sum_probs=84.4
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc-------CC----CCcEEEEeecccCC-------
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-------DR----SDMRWRVMDMTSMQ------- 129 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~-------~~----~~i~f~~~D~~~~~------- 129 (759)
++.+|||+|||.|.........+...++|+|+|+..|+.|++|+.. .. -...|+.+|.....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999999999888888899999999999999999999821 11 23567888876542
Q ss_pred --CcccEEEeCCCChh------HHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcc
Q 004354 130 --GGLDALMEPELGHK------LGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP 178 (759)
Q Consensus 130 --gtfD~Ii~~~~~~~------~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~ 178 (759)
..||+|-|....|. .+..+|+++.+.|+|||+||.++.....+...+..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 48999999765443 38899999999999999999999887766555544
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.5e-09 Score=96.18 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=85.4
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
.+||.+|.|.|.++..+.... ..++++||+||..+++|+..+... .+++++++++|+.++.+...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~------------- 67 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP------------- 67 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-------------
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-------------
Confidence 489999999999999999887 679999999999999999998432 25789999999999874443
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+||+|+.|..-.... .. -....-....|++.+.++|+|||++++-+
T Consensus 68 ------------------~~~~D~Iv~npP~~~~~-~~-~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 68 ------------------DGKFDLIVTNPPYGPRS-GD-KAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp ------------------TT-EEEEEE--STTSBT-T-----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CceeEEEEECCCCcccc-cc-chhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 47899999976433210 00 01111245789999999999999998765
|
... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.4e-09 Score=111.56 Aligned_cols=117 Identities=18% Similarity=0.142 Sum_probs=85.7
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC-C-CcccEEEeCCCC-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-GGLDALMEPELG- 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~-~-gtfD~Ii~~~~~- 141 (759)
+..+|||+|||+|.++..++.... .+|+++|+|+.+++.|+++....+ .+++|+++|+.+. + +.||+|+++...
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457899999999999999998632 369999999999999998875443 3689999998653 3 589999996310
Q ss_pred --------------------------hhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCc
Q 004354 142 --------------------------HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 184 (759)
Q Consensus 142 --------------------------~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w 184 (759)
......+++++.++|+|||++++..-.+......++....+.|
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALEEAYPDVPFTW 269 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCCce
Confidence 0114678999999999999998766433233333444333344
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-09 Score=109.61 Aligned_cols=101 Identities=22% Similarity=0.314 Sum_probs=83.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----gtfD~Ii~~~~~~ 142 (759)
.++.+|||+|||+|.++..+.+.+. +++++|+++.+++.++++.......+++...|+.+.. ++||+|++....+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 4678999999999999999988876 4999999999999998876544446788888887664 7899999976433
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+. ...+++.+.++|+|||.+++....
T Consensus 126 ~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 126 HVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 32 678899999999999999887654
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-08 Score=98.33 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=97.4
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSM 128 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~ 128 (759)
++++......+.. .+++.++|||||+|.++..++..+. .+|++||-++.+++..+++..+ ..+++..+.+|+-+.
T Consensus 20 ~EIRal~ls~L~~---~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRP---RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCC---CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 3455555555543 7899999999999999999986554 3699999999999988777644 357899999998665
Q ss_pred C---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCc
Q 004354 129 Q---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 184 (759)
Q Consensus 129 ~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w 184 (759)
- .++|+|+.... ...+.+++.+...|+|||+++......+.....+-.....+|
T Consensus 97 L~~~~~~daiFIGGg--~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 97 LPDLPSPDAIFIGGG--GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred hcCCCCCCEEEECCC--CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 3 47999999765 347899999999999999999877655544333332234466
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.1e-09 Score=111.40 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=80.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhc-cCCCCcEEEEeecccCC--CcccEEEeCCCC-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQ--GGLDALMEPELG- 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~-~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~- 141 (759)
.++.+|||+|||+|.++..++... ..+|+++|+|+.+++.++++.. ....++.++++|+.+.. ++||+|+++...
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 466799999999999999998874 2469999999999999988875 33457999999986643 689999985310
Q ss_pred ---------------------------hhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 142 ---------------------------HKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 142 ---------------------------~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
......+++++.++|+|||++++..
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 0114678889999999999988864
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.2e-09 Score=109.58 Aligned_cols=111 Identities=19% Similarity=0.238 Sum_probs=82.7
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--CcccEEEeCCCCh-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--GGLDALMEPELGH- 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--gtfD~Ii~~~~~~- 142 (759)
.+.+|||+|||+|.++..++... ..+++|+|+|+.+++.++++..... .+++++++|+.+.. ++||+|+++....
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 45689999999999999998862 2369999999999999988765433 35899999987643 7899999954110
Q ss_pred ---------------------------hHHHHHHHHHHHhcccCcEEEEEE-cCchhhhhhhcc
Q 004354 143 ---------------------------KLGNQYLSEVKRLLKSGGKFVCLT-LAESHVLGLLFP 178 (759)
Q Consensus 143 ---------------------------~~~~~~l~ei~rvLkpGG~liiit-~~~~~~~~~l~~ 178 (759)
.....+++++.++|+|||.+++.. +.+......++.
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~ 230 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFE 230 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHH
Confidence 002477899999999999988765 233343444444
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.5e-09 Score=115.33 Aligned_cols=112 Identities=8% Similarity=0.024 Sum_probs=85.0
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----gtfD~Ii~~~~~~ 142 (759)
++.+|||+|||+|.++..++.. ...+|+++|+|+.+++.++++......+++++++|+.+.. ++||+|+|+....
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 4569999999999999998865 3346999999999999999987655567999999986542 6799999965110
Q ss_pred ---------------------------hHHHHHHHHHHHhcccCcEEEEEE-cCchhhhhhhccc
Q 004354 143 ---------------------------KLGNQYLSEVKRLLKSGGKFVCLT-LAESHVLGLLFPK 179 (759)
Q Consensus 143 ---------------------------~~~~~~l~ei~rvLkpGG~liiit-~~~~~~~~~l~~~ 179 (759)
.....+++.+.+.|+|||.+++.. +.|......++..
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~ 395 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAE 395 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHH
Confidence 014577888889999999977643 4455555555544
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.2e-09 Score=102.78 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=78.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC-C---CcccEEEeCCCC--
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-Q---GGLDALMEPELG-- 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~-~---gtfD~Ii~~~~~-- 141 (759)
...-|||||||+|..+..|.+.|+ ..+|+|||+.|++.|.++- -.-+++.+||-.. + |+||.+++....
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e----~egdlil~DMG~GlpfrpGtFDg~ISISAvQW 124 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERE----LEGDLILCDMGEGLPFRPGTFDGVISISAVQW 124 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhh----hhcCeeeeecCCCCCCCCCccceEEEeeeeee
Confidence 467899999999999999999995 5999999999999998643 1246888998643 3 999999974311
Q ss_pred -----------hhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 142 -----------HKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 142 -----------~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
...+..+|..++.+|++|++.++-.|..
T Consensus 125 LcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 125 LCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred ecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 1126788999999999999999988754
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-08 Score=101.57 Aligned_cols=147 Identities=12% Similarity=0.103 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEE
Q 004354 505 SYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVH 584 (759)
Q Consensus 505 ~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~ 584 (759)
-+++.|+..+.+..- + +...+||.||+|+|.++..+....|..+|++||+++.+++.|++...-..-++++++
T Consensus 28 ~~~~~~~d~l~l~~~-l------~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~ 100 (187)
T PRK00107 28 LWERHILDSLAIAPY-L------PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVV 100 (187)
T ss_pred HHHHHHHHHHHHHhh-c------CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEE
Confidence 466667666554432 1 236799999999999999888888888999999999999999987622111349999
Q ss_pred EccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHH
Q 004354 585 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVK 664 (759)
Q Consensus 585 i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~ 664 (759)
.+|+.++-. ..+||+|+.+... . -..+++.+.
T Consensus 101 ~~d~~~~~~----------------------------------~~~fDlV~~~~~~-----~---------~~~~l~~~~ 132 (187)
T PRK00107 101 HGRAEEFGQ----------------------------------EEKFDVVTSRAVA-----S---------LSDLVELCL 132 (187)
T ss_pred eccHhhCCC----------------------------------CCCccEEEEcccc-----C---------HHHHHHHHH
Confidence 999876411 2579999985421 0 167999999
Q ss_pred HccCcCcEEEEEecCCChhHHHHHHHHHHHhcCceEEEeecC
Q 004354 665 DALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEE 706 (759)
Q Consensus 665 ~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~~~~ 706 (759)
+.|+|||.|++=...........+...+.-.-..+|.+.++.
T Consensus 133 ~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (187)
T PRK00107 133 PLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG 174 (187)
T ss_pred HhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence 999999999876544333322333333333334566666553
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.3e-09 Score=95.87 Aligned_cols=105 Identities=16% Similarity=0.108 Sum_probs=82.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||.|.|.++..+...+|..++++||+++.+++.|++++.....++++++.+|+..++...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 85 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS------------- 85 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh-------------
Confidence 3469999999999999999998888899999999999999998763222346899999876543322
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
..+||+|+++.. +.. ..++++.+.+.|+|||.|++++.
T Consensus 86 -------------------~~~~D~v~~~~~-----------~~~--~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 -------------------LPEPDRVFIGGS-----------GGL--LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred -------------------cCCCCEEEECCc-----------chh--HHHHHHHHHHHcCCCCEEEEEec
Confidence 257999999431 111 25899999999999999999975
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.7e-09 Score=107.04 Aligned_cols=100 Identities=23% Similarity=0.338 Sum_probs=83.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeecccCC----CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ----GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~-~i~f~~~D~~~~~----gtfD~Ii~~~~~~ 142 (759)
.+.+|||+|||+|.++..+++.+.. ++++|+|+.+++.++++...... ++++.+.|+.+.+ ++||+|++....+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGAN-VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 4679999999999999999887765 99999999999999887654444 5889999887654 6899999976444
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+. ...+++++.++|+|||.+++.+..
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 33 788999999999999998887654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-08 Score=110.02 Aligned_cols=98 Identities=16% Similarity=0.047 Sum_probs=78.5
Q ss_pred CeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC-C-CcccEEEeCCCC---
Q 004354 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-GGLDALMEPELG--- 141 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~-~-gtfD~Ii~~~~~--- 141 (759)
.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++++...+ .+++++++|+.+. + ++||+|++++..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 689999999999999998763 2469999999999999998875443 3599999998653 3 589999997410
Q ss_pred ------------------------hhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 142 ------------------------HKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 142 ------------------------~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
......+++++.+.|+|||++++..-
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 01246789999999999999998654
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=106.63 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=76.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHh----CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA----GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~----G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~ 138 (759)
.++.+|||+|||+|.++..|++. |. .+|+|+|+|+.|++.++++.. .+++++.+.|...++ ++||+|+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~--~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR--RPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc--cCCCeEEEEecccccccCCCccEEEEC
Confidence 45679999999999999888752 43 269999999999999877642 345777777765554 789999998
Q ss_pred CCChhH----HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 139 ELGHKL----GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 139 ~~~~~~----~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
...++. ...+++++.|+++ |.+++..+..+
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 765543 4679999999998 56666666544
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-08 Score=99.21 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=72.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC----------C-Cccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM----------Q-GGLD 133 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~----------~-gtfD 133 (759)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+ ..++++++++|+.+. + +.||
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 578899999999999999888763 2369999999843 125688999998763 2 5799
Q ss_pred EEEeCCCC----hh---------HHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 134 ALMEPELG----HK---------LGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 134 ~Ii~~~~~----~~---------~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+|+++... .+ ....++.++.++|+|||++++..+...
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~ 150 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE 150 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc
Confidence 99985321 11 147899999999999999999766543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=107.77 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=83.4
Q ss_pred CeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--CcccEEEeCCC----
Q 004354 70 PQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--GGLDALMEPEL---- 140 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--gtfD~Ii~~~~---- 140 (759)
.+|||+|||+|.++..++.... .+|+++|+|+.+++.++++..... .+++|+++|+.+.. ..||+|+++..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999988643 469999999999999998875433 24899999987643 48999999630
Q ss_pred -----C------------------hhHHHHHHHHHHHhcccCcEEEEEEc-Cchhhhhhhcc
Q 004354 141 -----G------------------HKLGNQYLSEVKRLLKSGGKFVCLTL-AESHVLGLLFP 178 (759)
Q Consensus 141 -----~------------------~~~~~~~l~ei~rvLkpGG~liiit~-~~~~~~~~l~~ 178 (759)
. ......++.++.+.|+|||.+++..- .+.+....++.
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~ 257 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLR 257 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHH
Confidence 0 01366789999999999999887553 44544555543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=88.05 Aligned_cols=95 Identities=24% Similarity=0.305 Sum_probs=78.2
Q ss_pred eEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHh-ccCCCCcEEEEeecccCC----CcccEEEeCCCChh--
Q 004354 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN-VRDRSDMRWRVMDMTSMQ----GGLDALMEPELGHK-- 143 (759)
Q Consensus 71 ~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~-~~~~~~i~f~~~D~~~~~----gtfD~Ii~~~~~~~-- 143 (759)
+|||+|||+|.++..++.....+++++|+++.+++.+++.. ......+++...|+.+.. +.+|+|++....+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 48999999999999998754567999999999999887433 223457899999987764 78999999875543
Q ss_pred -HHHHHHHHHHHhcccCcEEEEE
Q 004354 144 -LGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 144 -~~~~~l~ei~rvLkpGG~liii 165 (759)
....+++.+.+.|+|||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 4899999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.85 E-value=7e-09 Score=102.79 Aligned_cols=131 Identities=15% Similarity=0.227 Sum_probs=92.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|.|.++..+....|..+|++||+++..++.|++.+....-+.++++.+|..+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--------------- 95 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--------------- 95 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC---------------
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc---------------
Confidence 55789999999999999999999998999999999999999998833222239999999765422
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHH
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 688 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v 688 (759)
..+||+|+....-. .|. ......-..|++.+++.|+|||.|++-. .+.... +
T Consensus 96 -------------------~~~fD~Iv~NPP~~---~~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~-~~~~~~-~-- 147 (170)
T PF05175_consen 96 -------------------DGKFDLIVSNPPFH---AGG--DDGLDLLRDFIEQARRYLKPGGRLFLVI-NSHLGY-E-- 147 (170)
T ss_dssp -------------------TTCEEEEEE---SB---TTS--HCHHHHHHHHHHHHHHHEEEEEEEEEEE-ETTSCH-H--
T ss_pred -------------------ccceeEEEEccchh---ccc--ccchhhHHHHHHHHHHhccCCCEEEEEe-ecCCCh-H--
Confidence 36899999943210 000 0011134789999999999999887644 233332 2
Q ss_pred HHHHHHhcCceEEEe
Q 004354 689 ISRMKMVFNHLFCLQ 703 (759)
Q Consensus 689 ~~~l~~vF~~v~~~~ 703 (759)
..+++.|..+-.+.
T Consensus 148 -~~l~~~f~~~~~~~ 161 (170)
T PF05175_consen 148 -RLLKELFGDVEVVA 161 (170)
T ss_dssp -HHHHHHHS--EEEE
T ss_pred -HHHHHhcCCEEEEE
Confidence 22788999776655
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-08 Score=104.68 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=84.0
Q ss_pred CCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCCCCh
Q 004354 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPELGH 142 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~~~ 142 (759)
..+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++++...+ ++++++|+.+.. +.||+|+++....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 458999999999999998875 22369999999999999988875433 589999987642 5799999975110
Q ss_pred ----------------------------hHHHHHHHHHHHhcccCcEEEEEEcCc-hhhhhhhccccCCCceEEEEE
Q 004354 143 ----------------------------KLGNQYLSEVKRLLKSGGKFVCLTLAE-SHVLGLLFPKFRFGWKMSVHA 190 (759)
Q Consensus 143 ----------------------------~~~~~~l~ei~rvLkpGG~liiit~~~-~~~~~~l~~~~~~~w~v~~~~ 190 (759)
.....++..+.++|+|||++++..... ..-...++.. .+|...+..
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~--~g~~~~~~~ 239 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFAR--AGLIARVAS 239 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHH--CCCCceeeE
Confidence 014578888899999999999876432 2222222322 356555544
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-08 Score=118.11 Aligned_cols=141 Identities=15% Similarity=0.062 Sum_probs=100.3
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~---~~i~f~~ 122 (759)
+|.+....+..+..+. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++++...+ .++++++
T Consensus 522 ~flDqr~~R~~~~~~~------~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~ 595 (702)
T PRK11783 522 LFLDHRPTRRMIGQMA------KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQ 595 (702)
T ss_pred ECHHHHHHHHHHHHhc------CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEE
Confidence 4545445555555554 357999999999999999999888789999999999999999875443 3689999
Q ss_pred eecccCC----CcccEEEeCCCC-------------hhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCce
Q 004354 123 MDMTSMQ----GGLDALMEPELG-------------HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWK 185 (759)
Q Consensus 123 ~D~~~~~----gtfD~Ii~~~~~-------------~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~ 185 (759)
+|+.+.. ++||+|++++.. ......++..+.++|+|||.+++.+.... +....-.....++.
T Consensus 596 ~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~~~~~~~~~g~~ 674 (702)
T PRK11783 596 ADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKMDEEGLAKLGLK 674 (702)
T ss_pred ccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CChhHHHHHhCCCe
Confidence 9987642 689999996521 01256788899999999999887765432 22111111123677
Q ss_pred EEEEEeCC
Q 004354 186 MSVHAIPQ 193 (759)
Q Consensus 186 v~~~~~~~ 193 (759)
+++.....
T Consensus 675 ~~~i~~~~ 682 (702)
T PRK11783 675 AEEITAKT 682 (702)
T ss_pred EEEEecCC
Confidence 77655433
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.9e-08 Score=97.80 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=98.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...++|.||.|.|.+...+....|...+++||+++.+++.|++...-..-++++++.+|+.+++....
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~------------ 83 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF------------ 83 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC------------
Confidence 45689999999999999999989999999999999999999876522112479999999999875542
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHH
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 688 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v 688 (759)
.+..+|.|+++...+.+. -..-...++..+|++.+.+.|+|||.|.+.. ........+
T Consensus 84 ------------------~~~~~d~v~~~~pdpw~k--~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t--d~~~~~~~~ 141 (194)
T TIGR00091 84 ------------------PDGSLSKVFLNFPDPWPK--KRHNKRRITQPHFLKEYANVLKKGGVIHFKT--DNEPLFEDM 141 (194)
T ss_pred ------------------CCCceeEEEEECCCcCCC--CCccccccCCHHHHHHHHHHhCCCCEEEEEe--CCHHHHHHH
Confidence 124799999965322211 0001234567899999999999999998654 445555556
Q ss_pred HHHHHHhc
Q 004354 689 ISRMKMVF 696 (759)
Q Consensus 689 ~~~l~~vF 696 (759)
++.+.+..
T Consensus 142 ~~~~~~~~ 149 (194)
T TIGR00091 142 LKVLSEND 149 (194)
T ss_pred HHHHHhCC
Confidence 66666653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.6e-08 Score=98.04 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=79.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..+||.||.|+|.++..+....|..+|++||+++.+++.|++.. |+ ++++++.+|+.++. .
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~---~~i~~i~~d~~~~~---~---------- 106 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL---NNVEIVNGRAEDFQ---H---------- 106 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC---CCeEEEecchhhcc---c----------
Confidence 57999999999999998888888889999999999999998764 44 35999999987751 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
..+||+|+.+.. .. -..+++.+.+.|+|||.+++-..
T Consensus 107 ---------------------~~~fD~I~s~~~-----~~---------~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 107 ---------------------EEQFDVITSRAL-----AS---------LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---------------------cCCccEEEehhh-----hC---------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 257999998541 11 15688999999999999997653
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-08 Score=108.26 Aligned_cols=99 Identities=18% Similarity=0.284 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc------CCCCcEEEEeecccCC----CcccEEE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------DRSDMRWRVMDMTSMQ----GGLDALM 136 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~------~~~~i~f~~~D~~~~~----gtfD~Ii 136 (759)
.+.+||+||||+|..+..+++. +..+|+++|+++.+++.+++.+.. ..++++++.+|+.... ++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999886 667899999999999999887632 3578999999987643 7899999
Q ss_pred eCCCChh------HHHHHHHHHHHhcccCcEEEEEE
Q 004354 137 EPELGHK------LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 137 ~~~~~~~------~~~~~l~ei~rvLkpGG~liiit 166 (759)
+....+. ....+++.+++.|+|||++++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9642221 14788999999999999988753
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.6e-08 Score=106.89 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=80.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-gtfD~Ii~~~~~~ 142 (759)
.+..+|||||||+|.++..+++... -+++++|. +.+++.++++....+ .+++++.+|+.+.+ +.+|+|++....|
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh 226 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILY 226 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhh
Confidence 5668999999999999999998843 36999997 789998888765433 46899999997644 5579988766433
Q ss_pred ----hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 ----KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ----~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.....+++++++.|+|||++++.++
T Consensus 227 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 227 SANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 2256899999999999999999975
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-08 Score=111.29 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=82.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|..+..+++.+. ..|+++|+|+.+++.+++++...+.+++++++|+.+.. ++||.|+++..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 5788999999999999999998743 46999999999999999988665556789999998653 67999996431
Q ss_pred ----C--------hh------------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 141 ----G--------HK------------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 141 ----~--------~~------------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
. .+ ...+++..+.++|||||++++.|..
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 0 01 1357899999999999999988863
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-08 Score=99.48 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=75.7
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----- 129 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----- 129 (759)
.+..++ +++.+|||+|||.|.+..+|.+. +. ..+|+|+++..+..+.++ .+..+++|+.+.-
T Consensus 6 ~I~~~I-----~pgsrVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f~d 73 (193)
T PF07021_consen 6 IIAEWI-----EPGSRVLDLGCGDGELLAYLKDEKQV-DGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADFPD 73 (193)
T ss_pred HHHHHc-----CCCCEEEecCCCchHHHHHHHHhcCC-eEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhCCC
Confidence 456666 46899999999999999999875 44 499999999998877665 4778999986533
Q ss_pred CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++||.|+++...... +..+++++.|+ |+-.+++|.
T Consensus 74 ~sFD~VIlsqtLQ~~~~P~~vL~EmlRV----gr~~IVsFP 110 (193)
T PF07021_consen 74 QSFDYVILSQTLQAVRRPDEVLEEMLRV----GRRAIVSFP 110 (193)
T ss_pred CCccEEehHhHHHhHhHHHHHHHHHHHh----cCeEEEEec
Confidence 899999998765544 88889998877 334455553
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5e-08 Score=104.33 Aligned_cols=111 Identities=19% Similarity=0.215 Sum_probs=85.6
Q ss_pred eEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-CcccEEEeCC----CC--
Q 004354 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-GGLDALMEPE----LG-- 141 (759)
Q Consensus 71 ~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~-gtfD~Ii~~~----~~-- 141 (759)
+|||+|||+|.++..++.... .+|+|+|+|+.+++.|++++...+ .++.+++.|..... ++||+|++++ ..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 799999999999999998855 379999999999999999886654 45566666765544 8999999975 00
Q ss_pred ---------------------hhHHHHHHHHHHHhcccCcEEEEEEc-CchhhhhhhccccC
Q 004354 142 ---------------------HKLGNQYLSEVKRLLKSGGKFVCLTL-AESHVLGLLFPKFR 181 (759)
Q Consensus 142 ---------------------~~~~~~~l~ei~rvLkpGG~liiit~-~~~~~~~~l~~~~~ 181 (759)
......++.++.+.|+|||.+++..- .+......++....
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~ 254 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTG 254 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcC
Confidence 01277888999999999998887753 56555555555543
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=97.07 Aligned_cols=131 Identities=12% Similarity=0.160 Sum_probs=93.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHh-hcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVRE-MKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~-~~~~~~~~~~~~~ 607 (759)
...+||.||.|+|.++..|...+|..+|++||+++.+++.|++.+....-++++++++|+.+.+.. ..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~----------- 108 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP----------- 108 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC-----------
Confidence 457899999999999999988888889999999999999999887432225799999999555442 22
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
...||+|++..- ++.......-.......+|+.+.+.|+|||.|++-. ........
T Consensus 109 --------------------~~~~D~V~~~~~--~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~--~~~~~~~~ 164 (202)
T PRK00121 109 --------------------DGSLDRIYLNFP--DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT--DWEGYAEY 164 (202)
T ss_pred --------------------ccccceEEEECC--CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc--CCHHHHHH
Confidence 357999998431 110000000011235889999999999999998643 44555555
Q ss_pred HHHHHHH
Q 004354 688 VISRMKM 694 (759)
Q Consensus 688 v~~~l~~ 694 (759)
+++.+++
T Consensus 165 ~~~~~~~ 171 (202)
T PRK00121 165 MLEVLSA 171 (202)
T ss_pred HHHHHHh
Confidence 5555554
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.1e-08 Score=102.81 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=81.4
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhcc--CCCCcEEEEeecccCC----CcccEEEeCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR--DRSDMRWRVMDMTSMQ----GGLDALMEPEL 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~--~~~~i~f~~~D~~~~~----gtfD~Ii~~~~ 140 (759)
++.+|||||||+|.++..++... -.+++++|+++.+++.+++.+.. ..++++++++|+.+.- ++||+|+++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 45789999999999999998762 24699999999999999887643 2468999999986542 68999998532
Q ss_pred Ch-----hH-HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 141 GH-----KL-GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 141 ~~-----~~-~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
.. +. ...+++++.++|+|||++++..+..+
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 11 11 47999999999999999998655443
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-08 Score=103.57 Aligned_cols=98 Identities=12% Similarity=0.197 Sum_probs=74.4
Q ss_pred CeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---CcccEEEeCCCChhH
Q 004354 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPELGHKL 144 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~ 144 (759)
..++|+|||||.-+.-++.. |++|+|+|+|+.||+.+++...... ....+...++.++. ++.|+|+|....||.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 38999999999666666665 8899999999999998876542221 12333334444444 799999999988998
Q ss_pred -HHHHHHHHHHhcccCc-EEEEEEcC
Q 004354 145 -GNQYLSEVKRLLKSGG-KFVCLTLA 168 (759)
Q Consensus 145 -~~~~l~ei~rvLkpGG-~liiit~~ 168 (759)
.++++++++|+||+.| .+.+-.+.
T Consensus 114 dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 9999999999999766 66666665
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.4e-08 Score=100.25 Aligned_cols=119 Identities=19% Similarity=0.338 Sum_probs=96.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+|+..|.|.|+|+++|.... |..+|+.+|++++.++.|+++| |+ ++++.+..+|..+.+..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l--~d~v~~~~~Dv~~~~~~--------- 161 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL--GDRVTLKLGDVREGIDE--------- 161 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc--ccceEEEeccccccccc---------
Confidence 345799999999999999999765 5579999999999999999987 65 56799999997776432
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
..||+|++|+-.+ .++++++++.|+|||.+++-+. .-+
T Consensus 162 -------------------------~~vDav~LDmp~P---------------W~~le~~~~~Lkpgg~~~~y~P--~ve 199 (256)
T COG2519 162 -------------------------EDVDAVFLDLPDP---------------WNVLEHVSDALKPGGVVVVYSP--TVE 199 (256)
T ss_pred -------------------------cccCEEEEcCCCh---------------HHHHHHHHHHhCCCcEEEEEcC--CHH
Confidence 3699999998443 7899999999999999997654 444
Q ss_pred HHHHHHHHHHHh-cCce
Q 004354 684 TKDMVISRMKMV-FNHL 699 (759)
Q Consensus 684 ~~~~v~~~l~~v-F~~v 699 (759)
..+..+..|++. |-++
T Consensus 200 Qv~kt~~~l~~~g~~~i 216 (256)
T COG2519 200 QVEKTVEALRERGFVDI 216 (256)
T ss_pred HHHHHHHHHHhcCccch
Confidence 445678888887 6653
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.8e-08 Score=107.56 Aligned_cols=141 Identities=11% Similarity=0.063 Sum_probs=99.7
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~---~~i~f~~ 122 (759)
||.+....+..+..+. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++++...+ .++++++
T Consensus 204 ~flDqr~~R~~~~~~~------~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~ 277 (396)
T PRK15128 204 YYLDQRDSRLATRRYV------ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR 277 (396)
T ss_pred cChhhHHHHHHHHHhc------CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEE
Confidence 5555444555555543 467999999999999988776677789999999999999998875543 3689999
Q ss_pred eecccCC-------CcccEEEeCCCC----h-------hHHHHHHHHHHHhcccCcEEEEEEcCc----hhhhhhhcccc
Q 004354 123 MDMTSMQ-------GGLDALMEPELG----H-------KLGNQYLSEVKRLLKSGGKFVCLTLAE----SHVLGLLFPKF 180 (759)
Q Consensus 123 ~D~~~~~-------gtfD~Ii~~~~~----~-------~~~~~~l~ei~rvLkpGG~liiit~~~----~~~~~~l~~~~ 180 (759)
+|+.+.. ++||+|++++.. . .....++..+.++|+|||.++..+.+. +.+...+....
T Consensus 278 ~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa 357 (396)
T PRK15128 278 DDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAA 357 (396)
T ss_pred ccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHH
Confidence 9997752 589999997521 1 114566677889999999999877542 33444444333
Q ss_pred -CCCceEEEEEeC
Q 004354 181 -RFGWKMSVHAIP 192 (759)
Q Consensus 181 -~~~w~v~~~~~~ 192 (759)
..+..+++....
T Consensus 358 ~~~~~~~~~l~~~ 370 (396)
T PRK15128 358 IDAGRDVQFIEQF 370 (396)
T ss_pred HHcCCeEEEEEEc
Confidence 235566655543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.6e-08 Score=98.04 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=87.2
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~ 129 (759)
+.+...+.+.+.. .++.+|||||||+|..+.-|++..- +|+.+|+.+...+.|++++...+ .++.++++|...--
T Consensus 58 P~~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~ 133 (209)
T COG2518 58 PHMVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW 133 (209)
T ss_pred cHHHHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 4555666677665 7899999999999999999998844 69999999999999999886544 47999999986653
Q ss_pred ---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 130 ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 130 ---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+.||.|++.......+. .+.+.|++||++++..-
T Consensus 134 ~~~aPyD~I~Vtaaa~~vP~----~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 PEEAPYDRIIVTAAAPEVPE----ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCcCEEEEeeccCCCCH----HHHHhcccCCEEEEEEc
Confidence 89999999765433333 44567999999998764
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.3e-08 Score=101.44 Aligned_cols=95 Identities=16% Similarity=0.096 Sum_probs=75.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK- 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~- 143 (759)
...+|||+|||+|.++..++... ..+|+++|+|+.+++.++++. ++++|+++|+.+.. .+||+|+++....+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEFESNEKFDVVISNPPFGKI 139 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhhcccCCCcEEEEcCCcccc
Confidence 45799999999999998887752 346999999999999887753 57899999998876 78999999652111
Q ss_pred ----------H-----------HHHHHHHHHHhcccCcEEEEEE
Q 004354 144 ----------L-----------GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 144 ----------~-----------~~~~l~ei~rvLkpGG~liiit 166 (759)
. ..++++...++|+|+|.+++.-
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 0 3578888899999999877663
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=95.59 Aligned_cols=117 Identities=10% Similarity=0.123 Sum_probs=86.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|+|.++..+....|..+|++||+++.+++.|++.+....-++++++.+|+... .
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~---~------------ 94 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE---L------------ 94 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh---c------------
Confidence 3456899999999999999988888889999999999999999876211114699999986321 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
..+||+|+++.... .-.++++.+.+.|+|||.|+++.+..... ..
T Consensus 95 --------------------~~~~D~v~~~~~~~-------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~--~~ 139 (187)
T PRK08287 95 --------------------PGKADAIFIGGSGG-------------NLTAIIDWSLAHLHPGGRLVLTFILLENL--HS 139 (187)
T ss_pred --------------------CcCCCEEEECCCcc-------------CHHHHHHHHHHhcCCCeEEEEEEecHhhH--HH
Confidence 14699999853111 11578999999999999999987543322 34
Q ss_pred HHHHHHH
Q 004354 688 VISRMKM 694 (759)
Q Consensus 688 v~~~l~~ 694 (759)
+...+++
T Consensus 140 ~~~~l~~ 146 (187)
T PRK08287 140 ALAHLEK 146 (187)
T ss_pred HHHHHHH
Confidence 4555544
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7e-08 Score=95.09 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=66.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPE 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~ 139 (759)
-.+..|+|+|||||.++...+-.|...|+|+|+++++++.++++..+...++.|+++|+.+..+.+|.++.++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNP 116 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNP 116 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECC
Confidence 3566899999999999999998998889999999999999999887767789999999999999999999876
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=102.80 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=81.8
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccc
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTS 127 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~--~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~ 127 (759)
+.+...+.+.+.. .++.+|||+|||+|.++..+++... ..|+++|+++.+++.+++++... ..++.++++|...
T Consensus 66 p~l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 66 PSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh
Confidence 4444445555543 5678999999999999999987632 25999999999999998876543 3468999999866
Q ss_pred CC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 128 MQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 128 ~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.. +.||+|++..... .....+.+.|+|||++++..
T Consensus 143 ~~~~~~~fD~Ii~~~g~~----~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 GVPEFAPYDVIFVTVGVD----EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccccCCccEEEECCchH----HhHHHHHHhcCCCCEEEEEe
Confidence 54 6799999975433 23445678999999988754
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-07 Score=92.56 Aligned_cols=119 Identities=14% Similarity=0.167 Sum_probs=89.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.+|.|+|.++..+.... +..+|++||+++.+++.|++.+ |+ .+++.++.+|+.+++....
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~--~~~v~~~~~d~~~~l~~~~------- 109 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV--LNNIVLIKGEAPEILFTIN------- 109 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCCeEEEEechhhhHhhcC-------
Confidence 345689999999999988877654 4569999999999999999875 43 3679999999988775532
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
..||+|++..... .-.++++.+.+.|+|||.+++.... ..
T Consensus 110 -------------------------~~~D~V~~~~~~~-------------~~~~~l~~~~~~LkpgG~lv~~~~~--~~ 149 (198)
T PRK00377 110 -------------------------EKFDRIFIGGGSE-------------KLKEIISASWEIIKKGGRIVIDAIL--LE 149 (198)
T ss_pred -------------------------CCCCEEEECCCcc-------------cHHHHHHHHHHHcCCCcEEEEEeec--HH
Confidence 4799999953211 1167899999999999999986642 22
Q ss_pred HHHHHHHHHHHh
Q 004354 684 TKDMVISRMKMV 695 (759)
Q Consensus 684 ~~~~v~~~l~~v 695 (759)
....+...|++.
T Consensus 150 ~~~~~~~~l~~~ 161 (198)
T PRK00377 150 TVNNALSALENI 161 (198)
T ss_pred HHHHHHHHHHHc
Confidence 334556666543
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.5e-08 Score=97.74 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=81.3
Q ss_pred chhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeec
Q 004354 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFH-GITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDM 125 (759)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~-~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~ 125 (759)
..+.+...+.+++.. .++.+|||||||+|..+..|+.. |.. .|+++|+.+..++.|++++.. ...++.++++|.
T Consensus 56 s~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg 132 (209)
T PF01135_consen 56 SAPSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG 132 (209)
T ss_dssp --HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G
T ss_pred hHHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch
Confidence 335566666677765 78999999999999999988876 432 599999999999999998865 345899999998
Q ss_pred ccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 126 TSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 126 ~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.... +.||.|++.......+ ..+.+.|++||++++.-
T Consensus 133 ~~g~~~~apfD~I~v~~a~~~ip----~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 133 SEGWPEEAPFDRIIVTAAVPEIP----EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGTTGGG-SEEEEEESSBBSS------HHHHHTEEEEEEEEEEE
T ss_pred hhccccCCCcCEEEEeeccchHH----HHHHHhcCCCcEEEEEE
Confidence 6644 7899999987554333 44566799999999865
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-07 Score=92.50 Aligned_cols=96 Identities=10% Similarity=0.072 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++... ..+++++++|+.++. ..||.|+++...+.
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNI 89 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCccccCCCEEEECCCccc
Confidence 466799999999999999999885 4699999999999999887643 457999999999886 45999998764332
Q ss_pred HHHHHHHHHHHh--cccCcEEEEE
Q 004354 144 LGNQYLSEVKRL--LKSGGKFVCL 165 (759)
Q Consensus 144 ~~~~~l~ei~rv--LkpGG~liii 165 (759)
....+..+.+. +.++|.+++-
T Consensus 90 -~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 90 -STPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred -HHHHHHHHHhcCCCcceEEEEEE
Confidence 23333333332 3356666544
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-07 Score=96.35 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=67.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccc-C---C-CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-M---Q-GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~-~---~-gtfD~Ii~~~~~~ 142 (759)
++.+|||+|||+|.++..+++.+...++|+|+|+.+++.++++ +++++++|+.+ + + ++||+|+++...+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 5679999999999999988766444589999999999877542 47889999865 2 2 6899999987655
Q ss_pred hH--HHHHHHHHHHhccc
Q 004354 143 KL--GNQYLSEVKRLLKS 158 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkp 158 (759)
+. ...+++++.|++++
T Consensus 87 ~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 87 ATRNPEEILDEMLRVGRH 104 (194)
T ss_pred cCcCHHHHHHHHHHhCCe
Confidence 44 77888888887653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5e-07 Score=86.99 Aligned_cols=113 Identities=15% Similarity=0.196 Sum_probs=91.8
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccc
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFH--GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~--~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~ 127 (759)
.+.+++.+...+.. ..+..|||+|.|||-++..++..|.+ +++++++|+.......++. +.++++.+|+.+
T Consensus 33 Ss~lA~~M~s~I~p---esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----p~~~ii~gda~~ 105 (194)
T COG3963 33 SSILARKMASVIDP---ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----PGVNIINGDAFD 105 (194)
T ss_pred cHHHHHHHHhccCc---ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----CCccccccchhh
Confidence 34455555555543 56789999999999999999999864 6999999999988776654 678899999988
Q ss_pred CC--------CcccEEEeCC----CChhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 128 MQ--------GGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 128 ~~--------gtfD~Ii~~~----~~~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+. ..||.|+|.- ...+...++++.+...|.+||.++.++|++
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 76 6799999953 334457889999999999999999999983
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.8e-07 Score=89.53 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=97.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh---cCCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY---FGFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~---Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+..+++.||.|+|+++..+....|..++.++|-|++.++..+++ ||+ +++.++.+||-+++...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~---~n~~vv~g~Ap~~L~~~--------- 100 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV---DNLEVVEGDAPEALPDL--------- 100 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC---CcEEEEeccchHhhcCC---------
Confidence 345689999999999998888888999999999999999998876 574 68999999999998754
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhH
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 684 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~ 684 (759)
..+|+||+ +.. .++ ++.|+.+...|++||-+|+|.+.-....
T Consensus 101 ------------------------~~~daiFI----GGg-~~i---------~~ile~~~~~l~~ggrlV~naitlE~~~ 142 (187)
T COG2242 101 ------------------------PSPDAIFI----GGG-GNI---------EEILEAAWERLKPGGRLVANAITLETLA 142 (187)
T ss_pred ------------------------CCCCEEEE----CCC-CCH---------HHHHHHHHHHcCcCCeEEEEeecHHHHH
Confidence 26999999 322 223 7899999999999999999997654332
Q ss_pred HHHHHHHHHHhcC-ceEEEee
Q 004354 685 KDMVISRMKMVFN-HLFCLQL 704 (759)
Q Consensus 685 ~~~v~~~l~~vF~-~v~~~~~ 704 (759)
..++.+++.=- ++..+.+
T Consensus 143 --~a~~~~~~~g~~ei~~v~i 161 (187)
T COG2242 143 --KALEALEQLGGREIVQVQI 161 (187)
T ss_pred --HHHHHHHHcCCceEEEEEe
Confidence 34555554422 5555544
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.9e-08 Score=92.84 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=84.6
Q ss_pred CCCeEEEEcccccHHHHHHH-HhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~-~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.||+|.|.+...|. ...|..++++||+++.+++.|++.+ ++ ++++++++|..+ +...-
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~---~ni~~~~~d~~~-l~~~~-------- 70 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL---DNIEFIQGDIED-LPQEL-------- 70 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS---TTEEEEESBTTC-GCGCS--------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc---cccceEEeehhc-ccccc--------
Confidence 45799999999999999888 5567889999999999999999965 55 389999999877 33210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh-HHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-GSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~-~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
...||+|+....- ..+-+ ..+|+.+.+.|+++|++++.......+
T Consensus 71 -----------------------~~~~D~I~~~~~l-----------~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~ 116 (152)
T PF13847_consen 71 -----------------------EEKFDIIISNGVL-----------HHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE 116 (152)
T ss_dssp -----------------------STTEEEEEEESTG-----------GGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred -----------------------CCCeeEEEEcCch-----------hhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence 1579999995211 22222 479999999999999999887664444
Q ss_pred HH
Q 004354 684 TK 685 (759)
Q Consensus 684 ~~ 685 (759)
..
T Consensus 117 ~~ 118 (152)
T PF13847_consen 117 LP 118 (152)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
... |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.6e-07 Score=97.24 Aligned_cols=100 Identities=16% Similarity=0.220 Sum_probs=79.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHh--------ccCCCCcEEEEeecccCC----CcccE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRN--------VRDRSDMRWRVMDMTSMQ----GGLDA 134 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~--------~~~~~~i~f~~~D~~~~~----gtfD~ 134 (759)
...+||++|||+|..+..+++.. ..+|+++|+++.+++.|++.. .-..++++++.+|+.+.- +.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 45699999999999999888763 467999999999999998621 113578999999988753 78999
Q ss_pred EEeCCCCh------hH-HHHHHHHHHHhcccCcEEEEEEc
Q 004354 135 LMEPELGH------KL-GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 135 Ii~~~~~~------~~-~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|++..... .. -..+++.+++.|+|||++++..-
T Consensus 230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99974221 11 47799999999999999888754
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.1e-07 Score=104.84 Aligned_cols=103 Identities=20% Similarity=0.155 Sum_probs=81.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--CcccEEEeCC--
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--GGLDALMEPE-- 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--gtfD~Ii~~~-- 139 (759)
.++.+|||+|||+|..+..+++. +...|+++|+|+.+++.+++++...+ .+++++++|+.+.. ++||+|++..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPC 328 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCCC
Confidence 56789999999999999888764 12369999999999999998875543 46899999998765 7899999632
Q ss_pred --CCh-------------h-------HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 140 --LGH-------------K-------LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 140 --~~~-------------~-------~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
... . ....++.++.++|+|||++++.|.+-
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 110 0 13468999999999999999999763
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4e-07 Score=86.01 Aligned_cols=105 Identities=11% Similarity=0.150 Sum_probs=77.8
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcch-hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSR-LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~-ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-- 129 (759)
+...+.+.+.. ..+.+|||||||.|. ++..|.+.|+. |+++|+++.+++.++++ .+++++.|+++..
T Consensus 4 i~~~l~~~~~~---~~~~kileIG~GfG~~vA~~L~~~G~~-ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 4 IAEFIAENYEK---GKNKKIVELGIGFYFKVAKKLKESGFD-VIVIDINEKAVEKAKKL------GLNAFVDDLFNPNLE 73 (134)
T ss_pred HHHHHHHhccc---ccCCEEEEEEecCCHHHHHHHHHCCCE-EEEEECCHHHHHHHHHh------CCeEEECcCCCCCHH
Confidence 44455555543 356789999999996 99999988885 99999999999888665 3789999999887
Q ss_pred --CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 130 --GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 130 --gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
..+|+|++.....+....+++ +.+-+ |.-+++.+++.+
T Consensus 74 ~y~~a~liysirpp~el~~~~~~-la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 74 IYKNAKLIYSIRPPRDLQPFILE-LAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred HHhcCCEEEEeCCCHHHHHHHHH-HHHHc--CCCEEEEcCCCC
Confidence 789999997765544333333 33332 566777777654
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-07 Score=93.04 Aligned_cols=105 Identities=19% Similarity=0.147 Sum_probs=81.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|.|.++..+....|..+|++||+||.+++.|++++....-++++++.+|+.+.+....
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~------------ 107 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA------------ 107 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC------------
Confidence 44689999999999999888777878999999999999999987521112469999999877544322
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
..+|.|++|... . -..+++.+.+.|+|||.|+++...
T Consensus 108 --------------------~~~d~v~~~~~~--~------------~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 108 --------------------PAPDRVCIEGGR--P------------IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --------------------CCCCEEEEECCc--C------------HHHHHHHHHHhcCCCeEEEEEeec
Confidence 346778875311 0 167999999999999999998754
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-07 Score=99.53 Aligned_cols=100 Identities=19% Similarity=0.264 Sum_probs=79.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccC----CCcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM----QGGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~----~gtfD~Ii~ 137 (759)
.+.+||+||||+|.++..+++.+ ..+++++|+++.+++.+++.+.. ..++++++.+|..+. .++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34599999999999999888775 56799999999999999886532 235788888887653 278999998
Q ss_pred CCCCh-----hH-HHHHHHHHHHhcccCcEEEEEEc
Q 004354 138 PELGH-----KL-GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 138 ~~~~~-----~~-~~~~l~ei~rvLkpGG~liiit~ 167 (759)
..... .. ...+++.+.+.|+|||.+++.+-
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 65311 11 56889999999999999998743
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-07 Score=97.33 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=81.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC---CcccEEEeCC-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---GGLDALMEPE- 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~---gtfD~Ii~~~- 139 (759)
.++.+|||+|||+|..+..+++.. -..|+++|+++.+++.+++++...+ .++.+++.|+..+. +.||+|+++.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 577899999999999999988752 1369999999999999998876543 46899999987755 6799999742
Q ss_pred ---CC-------------h-------hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 140 ---LG-------------H-------KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 140 ---~~-------------~-------~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.. . .....+|+.+.++|||||+++..|.+
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 10 0 01356999999999999999998765
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-07 Score=105.13 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=84.6
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC---
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--- 129 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--- 129 (759)
.+...+.. .++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...+ .+++++++|+.+..
T Consensus 241 lv~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDP---KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCC---CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh
Confidence 44444443 567899999999999999998752 3469999999999999988875543 45899999998764
Q ss_pred -CcccEEEeCCC----C--------h-----h-------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 -GGLDALMEPEL----G--------H-----K-------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 -gtfD~Ii~~~~----~--------~-----~-------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++||+|+++.. . . . ....++.++.++|||||+++..|..
T Consensus 318 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 68999997531 0 0 0 1356899999999999999987654
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.62 E-value=6e-07 Score=96.43 Aligned_cols=114 Identities=17% Similarity=0.298 Sum_probs=84.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
.+.+||.+|.|.|+++..+....|..++++||+++.++++|++.. |+ +++++++.+|..+.+ .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~--~~~i~~~~~D~~~~~---~--------- 186 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL--EDRVTLIQSDLFAAL---P--------- 186 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhhcc---C---------
Confidence 346899999999999999999989889999999999999999987 44 468999999986543 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCC--CCCC-----CcCCCCC--------ChHHHHHHHHHccCcC
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS--SSGM-----TCPAADF--------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~--~~g~-----scPp~~f--------~~~~fl~~~~~~L~~~ 670 (759)
..+||+|+.|.--... ...+ ..|...+ .-..++..+.+.|+||
T Consensus 187 ----------------------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~g 244 (284)
T TIGR03533 187 ----------------------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNEN 244 (284)
T ss_pred ----------------------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 2469999997411100 0001 0111111 1256889999999999
Q ss_pred cEEEEEec
Q 004354 671 GLFIVNLV 678 (759)
Q Consensus 671 Gilv~N~~ 678 (759)
|.+++.+.
T Consensus 245 G~l~~e~g 252 (284)
T TIGR03533 245 GVLVVEVG 252 (284)
T ss_pred CEEEEEEC
Confidence 99999885
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-07 Score=99.98 Aligned_cols=99 Identities=19% Similarity=0.295 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccC----C-CcccEE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM----Q-GGLDAL 135 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~----~-gtfD~I 135 (759)
+...+||+||||.|.++..+++. +..+|+.+|+++.+++.+++.+.. ..++++++.+|+... + +.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 35679999999999999999886 346799999999999999887632 346899999997543 2 689999
Q ss_pred EeCCCChh------HHHHHHHHHHHhcccCcEEEEE
Q 004354 136 MEPELGHK------LGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 136 i~~~~~~~------~~~~~l~ei~rvLkpGG~liii 165 (759)
++....+. .-..+++.+++.|+|||.++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 99643221 1567899999999999998764
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-07 Score=96.63 Aligned_cols=99 Identities=21% Similarity=0.255 Sum_probs=74.5
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC------C------------------------
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR------S------------------------ 116 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~------~------------------------ 116 (759)
.+..+|||||-+|.++..+++. |...|.|+||.+..|+.|++.+..-. .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 3568999999999999999986 77789999999999999998763210 0
Q ss_pred ------C-------cEEEEeecccCC-CcccEEEeCCCChh--------HHHHHHHHHHHhcccCcEEEEEE
Q 004354 117 ------D-------MRWRVMDMTSMQ-GGLDALMEPELGHK--------LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 117 ------~-------i~f~~~D~~~~~-gtfD~Ii~~~~~~~--------~~~~~l~ei~rvLkpGG~liiit 166 (759)
+ .-+...|+.++. ..||+|+|.....| -+..+|+.+.++|.|||+|++.-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 0 111222333333 78999999653222 28999999999999999999874
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-08 Score=101.64 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=73.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~~ 141 (759)
.+-.++||+|||||..+..|.+. ..+++|+|||+.|++.|.++- .-=...++|+..+. ..||+|.+.+..
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg----~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG----LYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc----chHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 34578999999999999999887 556999999999999887652 11122333332211 789999998765
Q ss_pred hhH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 142 HKL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 142 ~~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
... .+.++.-+...|+|||.|.+.+-
T Consensus 199 ~YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 199 PYLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred HhhcchhhHHHHHHHhcCCCceEEEEec
Confidence 554 88999999999999999998863
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.1e-07 Score=94.02 Aligned_cols=137 Identities=13% Similarity=0.121 Sum_probs=101.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.+|.|.|..+..+...++. ..|++||+++..++.+++.+....-.+++++.+|+..+-..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~------------- 137 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA------------- 137 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh-------------
Confidence 4468999999999999998887753 58999999999999999887221124699999998775221
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--------------ChHHHHHHHHHccCcCcEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQGLF 673 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--------------~~~~fl~~~~~~L~~~Gil 673 (759)
...||+|++|+-.+. .|+-...+.. ...++|+.+.+.|+|||.|
T Consensus 138 --------------------~~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~l 195 (264)
T TIGR00446 138 --------------------VPKFDAILLDAPCSG--EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVL 195 (264)
T ss_pred --------------------ccCCCEEEEcCCCCC--CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 135999999985442 2222222211 3467999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHhcCceE
Q 004354 674 IVNLVSRSQATKDMVISRMKMVFNHLF 700 (759)
Q Consensus 674 v~N~~~~~~~~~~~v~~~l~~vF~~v~ 700 (759)
++-..+...+.-+.+++.+.+.++...
T Consensus 196 vYstcs~~~~Ene~vv~~~l~~~~~~~ 222 (264)
T TIGR00446 196 VYSTCSLEPEENEAVVDYLLEKRPDVV 222 (264)
T ss_pred EEEeCCCChHHHHHHHHHHHHhCCCcE
Confidence 988766677666788888888776543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.2e-07 Score=103.14 Aligned_cols=102 Identities=19% Similarity=0.270 Sum_probs=82.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----CcccEEEeCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----GGLDALMEPE 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----gtfD~Ii~~~ 139 (759)
.++.+|||+|||+|..+.+++.. +-..|+++|+|+.+++.+++++...+ .++++.++|+..++ +.||.|+++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 57789999999999999999875 12369999999999999998876543 45889999998764 7899999742
Q ss_pred ----CCh--------------------hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 140 ----LGH--------------------KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 140 ----~~~--------------------~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
... ....+++.++.+.|||||+++..|.+
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 110 01467799999999999999999876
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.3e-07 Score=96.80 Aligned_cols=101 Identities=19% Similarity=0.284 Sum_probs=79.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+.+||.||+|+|.++..|...+|..+|++||++|.+++.|++. +++++.+|+.++. .
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~---~----------- 86 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK---P----------- 86 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC---C-----------
Confidence 455799999999999999999988888999999999999999763 4788999976541 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
...||+|+...- ..-+ |. -..+++.+.+.|+|||.|++++..
T Consensus 87 --------------------~~~fD~v~~~~~----l~~~--~d----~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 87 --------------------KPDTDVVVSNAA----LQWV--PE----HADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred --------------------CCCceEEEEehh----hhhC--CC----HHHHHHHHHHhCCCCcEEEEEcCC
Confidence 257999998321 1111 11 267999999999999999998654
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-07 Score=95.68 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=77.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||.|.|.++.+|....+ ..+|++||++|.+++.|++.+.-..-++++++.+|+.+....
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~------------ 143 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP------------ 143 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc------------
Confidence 3457999999999999999988864 357999999999999999987322225799999998654211
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
...||+|++|.... ...+.+.+.|+|||.|++.+.
T Consensus 144 ---------------------~~~fD~Ii~~~~~~----------------~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 144 ---------------------LAPYDRIYVTAAGP----------------KIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ---------------------cCCCCEEEEcCCcc----------------cccHHHHHhcCcCcEEEEEEc
Confidence 24799999964221 123457788999999999874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.1e-07 Score=95.00 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=99.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.+|.|.|.++..+...+|..+++++|+++.+++.|++.+......+++++.+|..+.+.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~-------------- 172 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP-------------- 172 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--------------
Confidence 345789999999999999999998889999999999999999999752235689999998733211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCC--CC------CcCCCCCC--------hHHHHHHHHHccCcCc
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS--GM------TCPAADFV--------EGSFLLTVKDALSEQG 671 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~--g~------scPp~~f~--------~~~fl~~~~~~L~~~G 671 (759)
..+||+|+.+..-..... .+ ..|...+. -..+++.+.+.|+|||
T Consensus 173 --------------------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG 232 (275)
T PRK09328 173 --------------------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGG 232 (275)
T ss_pred --------------------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCC
Confidence 257999998642111000 00 01111121 2568888889999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHH-hcCceEEEeecCCccEEEEEe
Q 004354 672 LFIVNLVSRSQATKDMVISRMKM-VFNHLFCLQLEEDVNLVLFGL 715 (759)
Q Consensus 672 ilv~N~~~~~~~~~~~v~~~l~~-vF~~v~~~~~~~~~N~Vl~a~ 715 (759)
.+++.+.... ...+...+.+ -|..+..+.--.+...++++.
T Consensus 233 ~l~~e~g~~~---~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 233 WLLLEIGYDQ---GEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred EEEEEECchH---HHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 9999763322 2234444443 355554443233455666653
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-07 Score=95.09 Aligned_cols=90 Identities=11% Similarity=0.077 Sum_probs=70.8
Q ss_pred CCCeEEEECCCcchhHHHHHHh----CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA----GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELG 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~----G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~ 141 (759)
.+.+|||+|||+|.++..++.. ...+|+++|+++.+++.|+++. +++.|+++|+.... ++||+|++++..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----~~~~~~~~D~~~~~~~~~FDlIIsNPPY 124 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----PEATWINADALTTEFDTLFDMAISNPPF 124 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----cCCEEEEcchhcccccCCccEEEECCCC
Confidence 4679999999999999988764 2236999999999999998664 46899999997655 789999997621
Q ss_pred h--------------hHHHHHHHHHHHhcccCcE
Q 004354 142 H--------------KLGNQYLSEVKRLLKSGGK 161 (759)
Q Consensus 142 ~--------------~~~~~~l~ei~rvLkpGG~ 161 (759)
. .....+++.+.+++++|+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1 1256788888887766664
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-07 Score=95.23 Aligned_cols=99 Identities=15% Similarity=0.015 Sum_probs=79.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC---------CCccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM---------QGGLD 133 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~---------~gtfD 133 (759)
.+..+|||+|||+|..+..++.. +-.+|+++|+++.+++.|++++...+ .+++++.+|+.+. .++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 45679999999999988888764 23469999999999999998876543 4689999998764 15899
Q ss_pred EEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 134 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 134 ~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+|++... ......++..+.++|+|||.+++-.
T Consensus 147 ~VfiDa~-k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD-KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC-HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9999653 2345689999999999999877643
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-06 Score=88.62 Aligned_cols=105 Identities=10% Similarity=0.126 Sum_probs=78.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||+|.|.++..+.+.. |..++++||++|.+++.|++.+.-..-++++++.+|+.++. .
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~----------- 110 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP--F----------- 110 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--C-----------
Confidence 345799999999999998888775 56799999999999999998863212357999999976531 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
...+||+|++...- ..+. --..+|+.+.+.|+|||.+++
T Consensus 111 --------------------~~~~fD~V~~~~~l----~~~~------~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 111 --------------------DDNSFDYVTIGFGL----RNVP------DYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred --------------------CCCCccEEEEeccc----ccCC------CHHHHHHHHHHHcCcCeEEEE
Confidence 13579999984211 1111 125789999999999998875
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-07 Score=93.79 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=79.4
Q ss_pred CCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC------CcccEEEeCCC
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ------GGLDALMEPEL 140 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~------gtfD~Ii~~~~ 140 (759)
...+||||||.|.+...++.... .+++|+|++...+..+.++... ...|+.++++|+...- +++|.|+.+..
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 34899999999999999998743 4799999999999998887744 5679999999998732 89999998653
Q ss_pred ChhH----------HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 141 GHKL----------GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 141 ~~~~----------~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
.+|. -..++..+.++|+|||.+.+.|=..+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~ 137 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE 137 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence 3321 68899999999999999999986554
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=6e-07 Score=97.89 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----gtfD~Ii~~~~~~ 142 (759)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++++...+ .+++|+++|+.++. +.||+|++++.-.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 45799999999999999999886 469999999999999988875433 46999999997753 5799999976322
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEe
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 191 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~ 191 (759)
.....+++.+ ..++|++ ++.++..+....+.+- .+ .+|.+.....
T Consensus 252 G~~~~~~~~l-~~~~~~~-ivyvsc~p~t~~rd~~-~l-~~y~~~~~~~ 296 (315)
T PRK03522 252 GIGKELCDYL-SQMAPRF-ILYSSCNAQTMAKDLA-HL-PGYRIERVQL 296 (315)
T ss_pred CccHHHHHHH-HHcCCCe-EEEEECCcccchhHHh-hc-cCcEEEEEEE
Confidence 1122333333 3356654 5555555443333322 22 3666665443
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.4e-07 Score=101.70 Aligned_cols=122 Identities=11% Similarity=0.154 Sum_probs=85.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC-------CcccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-------GGLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~-------gtfD~Ii~~ 138 (759)
.++.+|||+|||+|.++..|++.+ ..|+|+|+|+.|++.|++++... ..+++|+++|+.+.. ++||+|+++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 567899999999999999999875 56999999999999998876543 346999999986421 579999997
Q ss_pred CCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeC
Q 004354 139 ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 192 (759)
Q Consensus 139 ~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~ 192 (759)
..... ....+..+.+ ++|++. +.++..+..+.+.+-.....+|.+......
T Consensus 375 PPr~g-~~~~~~~l~~-~~~~~i-vyvSCnp~tlaRDl~~L~~~gY~l~~i~~~ 425 (443)
T PRK13168 375 PPRAG-AAEVMQALAK-LGPKRI-VYVSCNPATLARDAGVLVEAGYRLKRAGML 425 (443)
T ss_pred cCCcC-hHHHHHHHHh-cCCCeE-EEEEeChHHhhccHHHHhhCCcEEEEEEEe
Confidence 63222 3355555555 577665 555555444443333332446776654443
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.3e-07 Score=95.21 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=82.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..+.+||.||+|.|.++..|... ..+|++||+++.+++.|++...- ...++++++.+|+.+.....
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~----------- 109 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL----------- 109 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-----------
Confidence 34579999999999999988876 36899999999999999998621 12468999999998763221
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
...||+|++.. ....+..| ..+|+.+.+.|+|||+|++-.+..+
T Consensus 110 ---------------------~~~fD~V~~~~----vl~~~~~~------~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 110 ---------------------ETPVDLILFHA----VLEWVADP------KSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred ---------------------CCCCCEEEehh----HHHhhCCH------HHHHHHHHHHcCCCeEEEEEEECcc
Confidence 25799999731 11111111 5789999999999999987655544
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.4e-07 Score=102.31 Aligned_cols=111 Identities=15% Similarity=0.173 Sum_probs=82.2
Q ss_pred HHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEE--EEeecccCC--
Q 004354 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRW--RVMDMTSMQ-- 129 (759)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f--~~~D~~~~~-- 129 (759)
..+...+.. .++.+|||+|||+|..+..+++. +-..|+++|+|+.+++.+++++...+..+.+ .++|.....
T Consensus 228 ~~~~~~L~~---~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 228 QWVATWLAP---QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHHhCC---CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 334444443 57889999999999999999875 3236999999999999999888655433333 666665432
Q ss_pred ---CcccEEEeCC----CC--h------h------------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 ---GGLDALMEPE----LG--H------K------------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 ---gtfD~Ii~~~----~~--~------~------------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++||.|++.. .. + | ....+|.++.++|||||+++..|.+
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 6799999632 11 0 0 1468999999999999999999875
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-07 Score=93.82 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=86.7
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCC
Q 004354 501 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ 577 (759)
Q Consensus 501 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~ 577 (759)
++..+|..+++..+.- .....+||.||.|.|..+..|.+... +|.+||+++...+.|++.| |+
T Consensus 54 tis~P~~vA~m~~~L~----------~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~-- 119 (209)
T COG2518 54 TISAPHMVARMLQLLE----------LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGY-- 119 (209)
T ss_pred eecCcHHHHHHHHHhC----------CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCC--
Confidence 5666776666544321 14558999999999999999998864 9999999999999999988 54
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChH
Q 004354 578 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 657 (759)
Q Consensus 578 ~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~ 657 (759)
.++.|+++||..-..+ ...||.|++-+-... .|..|+
T Consensus 120 -~nV~v~~gDG~~G~~~---------------------------------~aPyD~I~Vtaaa~~-------vP~~Ll-- 156 (209)
T COG2518 120 -ENVTVRHGDGSKGWPE---------------------------------EAPYDRIIVTAAAPE-------VPEALL-- 156 (209)
T ss_pred -CceEEEECCcccCCCC---------------------------------CCCcCEEEEeeccCC-------CCHHHH--
Confidence 3499999999875433 257999999654332 344444
Q ss_pred HHHHHHHHccCcCcEEEEEec
Q 004354 658 SFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 658 ~fl~~~~~~L~~~Gilv~N~~ 678 (759)
+.|++||.+++-+-
T Consensus 157 -------~QL~~gGrlv~PvG 170 (209)
T COG2518 157 -------DQLKPGGRLVIPVG 170 (209)
T ss_pred -------HhcccCCEEEEEEc
Confidence 45999999998885
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-07 Score=92.09 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=64.4
Q ss_pred EEEeCCHHHHHHHHHHhccC----CCCcEEEEeecccCC---CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEE
Q 004354 95 TNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQ---GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 95 tgIDiS~~~I~~a~~r~~~~----~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liii 165 (759)
+|+|+|+.|++.|+++.... ..+++|+++|+.+++ ++||+|++....++. ...++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 58999999999998765321 246999999999988 689999998755543 889999999999999999999
Q ss_pred EcCchh
Q 004354 166 TLAESH 171 (759)
Q Consensus 166 t~~~~~ 171 (759)
++..++
T Consensus 81 d~~~~~ 86 (160)
T PLN02232 81 DFNKSN 86 (160)
T ss_pred ECCCCC
Confidence 987653
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.2e-07 Score=94.31 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=76.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.||.|.|.++..|.+..+ ..+|++||++|.+++.|++.+....-++++++.+|+.....
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~-------------- 141 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE-------------- 141 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------------
Confidence 457999999999999988888764 46999999999999999998732223579999999865321
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
....||+|+++.... +..+.+.+.|+|||.|++.+.
T Consensus 142 -------------------~~~~fD~I~~~~~~~----------------~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 142 -------------------ENAPYDRIYVTAAGP----------------DIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred -------------------cCCCcCEEEECCCcc----------------cchHHHHHhhCCCcEEEEEEc
Confidence 125799999965322 122356678999999998763
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-07 Score=94.94 Aligned_cols=112 Identities=18% Similarity=0.184 Sum_probs=90.7
Q ss_pred HHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeecccCC-----
Q 004354 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ----- 129 (759)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~-~i~f~~~D~~~~~----- 129 (759)
+..++.. .....+||||||.|.+...++.... .+++|||+....+..|.+++.+.+- |+.+++.|+....
T Consensus 40 ~~~~f~~---~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~ 116 (227)
T COG0220 40 WSALFGN---NNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIP 116 (227)
T ss_pred HHHHhCC---CCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCC
Confidence 4455543 2235899999999999999998854 4799999999999999998877666 9999999998765
Q ss_pred -CcccEEEeCCCChhH----------HHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 130 -GGLDALMEPELGHKL----------GNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 130 -gtfD~Ii~~~~~~~~----------~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
+++|-|+.+...+|. ...+++.+.++|+|||.+.+.|=....
T Consensus 117 ~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 117 DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 599999986544332 678999999999999999999965443
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.1e-07 Score=94.23 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=81.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|+|.++..|...+|..+|++||+++.+++.|++.+ +++.++.+|+.++. .
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~---~----------- 90 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ---P----------- 90 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC---C-----------
Confidence 3457999999999999999998888889999999999999999885 35889999986542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
..+||+|+... . ...+ + -...+++.+.+.|+|||.|++.+..
T Consensus 91 --------------------~~~fD~v~~~~--~--l~~~---~---d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 91 --------------------PQALDLIFANA--S--LQWL---P---DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred --------------------CCCccEEEEcc--C--hhhC---C---CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 24799999832 1 1111 1 1367999999999999999997643
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.4e-07 Score=95.90 Aligned_cols=147 Identities=14% Similarity=0.198 Sum_probs=98.0
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
.+||.+|.|.|+++..+...+|..+|++||+++.++++|+++.... ..++++++.+|..+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~---------------- 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP---------------- 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC----------------
Confidence 6899999999999999999989999999999999999999987221 14679999999866431
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCC-CCC-CCCCC-----CcCCCCCC--------hHHHHHHHHHccCcCcEEE
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVD-SPD-SSSGM-----TCPAADFV--------EGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~-s~d-~~~g~-----scPp~~f~--------~~~fl~~~~~~L~~~Gilv 674 (759)
..+||+|+.+.- .+. ....+ ..|...+. -..+++.+.+.|+|||.++
T Consensus 199 ------------------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 199 ------------------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred ------------------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 146999999631 100 00000 11222221 2578899999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHhcCceEEEeecCCccEEEEEecC
Q 004354 675 VNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSS 717 (759)
Q Consensus 675 ~N~~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~ 717 (759)
+.+... .. .+.+.+.. .. ...+....+.-.++++++.
T Consensus 261 ~E~g~~-~~---~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 297 (307)
T PRK11805 261 VEVGNS-RV---HLEEAYPD-VP-FTWLEFENGGDGVFLLTRE 297 (307)
T ss_pred EEECcC-HH---HHHHHHhh-CC-CEEEEecCCCceEEEEEHH
Confidence 987432 22 23333332 11 2234445566666766644
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-06 Score=92.34 Aligned_cols=102 Identities=11% Similarity=0.167 Sum_probs=77.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHh--CCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC--MPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~--~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|+|.+...|... .|..++++||++|.|++.|++.+.- ....+++++.+|..++ .
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~----~-------- 122 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI----A-------- 122 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC----C--------
Confidence 34578999999999988877773 5788999999999999999998732 2245899999997553 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC----hHHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV----EGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~----~~~fl~~~~~~L~~~Gilv~N 676 (759)
...+|+|++-. .-+++ -..+++.+.+.|+|||.|++-
T Consensus 123 -----------------------~~~~D~vv~~~------------~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 123 -----------------------IENASMVVLNF------------TLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred -----------------------CCCCCEEehhh------------HHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 13488877521 11122 257999999999999998874
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.5e-07 Score=91.54 Aligned_cols=101 Identities=10% Similarity=0.027 Sum_probs=76.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----gtfD~Ii~~~~~~ 142 (759)
++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++...+ .+++++++|+.+.. +.||+|++++...
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 467999999999999987666677789999999999999888764432 46899999987632 4699999987532
Q ss_pred -hHHHHHHHHHHH--hcccCcEEEEEEcC
Q 004354 143 -KLGNQYLSEVKR--LLKSGGKFVCLTLA 168 (759)
Q Consensus 143 -~~~~~~l~ei~r--vLkpGG~liiit~~ 168 (759)
......++.+.. +|+|+|.+++....
T Consensus 133 ~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 234555565555 37888877776544
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.7e-07 Score=91.44 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=76.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
...+||.||.|.|.++..+.+..+ ..+|++||++|.+++.|++.+.- ...++++++.+|+.+.+..
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~------------ 139 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK------------ 139 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc------------
Confidence 346899999999999988888764 45899999999999999987731 1235799999998754321
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
...||+|+++.... .+...+.+.|+|||.|++.+.
T Consensus 140 ---------------------~~~fD~Ii~~~~~~----------------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 140 ---------------------HAPFDAIIVTAAAS----------------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ---------------------CCCccEEEEccCcc----------------hhhHHHHHhcCcCcEEEEEEc
Confidence 25799999964321 122467788999999998873
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.5e-07 Score=101.33 Aligned_cols=102 Identities=23% Similarity=0.268 Sum_probs=81.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-------CcccEEE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-------GGLDALM 136 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~-------gtfD~Ii 136 (759)
.++.+|||+|||+|..+.++++. + -..|+++|+++.+++.+++++...+ .+++++++|+.+.. ++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 57789999999999999999876 2 2369999999999999998876543 46899999998753 5799999
Q ss_pred eCCC----C--------hh------------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 137 EPEL----G--------HK------------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 137 ~~~~----~--------~~------------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+... . .| ...+++.++.++|||||+++..|..
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 7421 0 00 1468899999999999999988754
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-06 Score=97.77 Aligned_cols=135 Identities=13% Similarity=0.186 Sum_probs=101.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+|.|.|..+.++...++ ..+|+++|+++..++.+++.+ |+ .+++++.+|+..+-...
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~~~~--------- 304 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLTEYV--------- 304 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhhhhh---------
Confidence 446899999999999998988873 469999999999999999886 54 35899999998763221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--------------ChHHHHHHHHHccCcC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--------------~~~~fl~~~~~~L~~~ 670 (759)
..+||.|++|+..+. .|+..-.+.. +..+.|..+.+.|+||
T Consensus 305 -----------------------~~~fD~Vl~DaPCsg--~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 305 -----------------------QDTFDRILVDAPCTS--LGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred -----------------------hccCCEEEECCCCCC--CccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 256999999986542 2332211211 3577899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhcCceE
Q 004354 671 GLFIVNLVSRSQATKDMVISRMKMVFNHLF 700 (759)
Q Consensus 671 Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~ 700 (759)
|.+++-..+...+.-+.++..+-+-++...
T Consensus 360 G~LvYsTCs~~~eEne~vv~~fl~~~~~~~ 389 (431)
T PRK14903 360 GILLYSTCTVTKEENTEVVKRFVYEQKDAE 389 (431)
T ss_pred CEEEEEECCCChhhCHHHHHHHHHhCCCcE
Confidence 999998877776666777877766666543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.8e-06 Score=91.23 Aligned_cols=146 Identities=14% Similarity=0.239 Sum_probs=98.3
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.+||.+|.|+|+++..+...+|..+|++||+++..+++|++.. ++ .++++++.+|..+.+ .
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~--~~~v~~~~~d~~~~~---~----------- 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL--EHRVEFIQSNLFEPL---A----------- 179 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhccC---c-----------
Confidence 6899999999999999999989889999999999999999986 43 457999999975532 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCC--CCC-----CcCCCCC--------ChHHHHHHHHHccCcCcE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM-----TCPAADF--------VEGSFLLTVKDALSEQGL 672 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~--~g~-----scPp~~f--------~~~~fl~~~~~~L~~~Gi 672 (759)
..+||+|+.+..--... ..+ ..|...+ .-..++..+.+.|+|||+
T Consensus 180 --------------------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~ 239 (284)
T TIGR00536 180 --------------------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGF 239 (284)
T ss_pred --------------------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 13699999863110000 000 1122111 235688889999999999
Q ss_pred EEEEecCCChhHHHHHHHHHHH--hcCceEEEeecCCccEEEEEe
Q 004354 673 FIVNLVSRSQATKDMVISRMKM--VFNHLFCLQLEEDVNLVLFGL 715 (759)
Q Consensus 673 lv~N~~~~~~~~~~~v~~~l~~--vF~~v~~~~~~~~~N~Vl~a~ 715 (759)
|++.+..... ..+.+.+.. -|..+-.++--.+...++++.
T Consensus 240 l~~e~g~~q~---~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 240 LVCEIGNWQQ---KSLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred EEEEECccHH---HHHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 9998853322 234444442 355554444334456777764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.9e-06 Score=95.32 Aligned_cols=131 Identities=13% Similarity=0.157 Sum_probs=99.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+.+|.||.|.|.....+....|...+.+||+++.+++.|.+......-++++++.+||..++...+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~----------- 189 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP----------- 189 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC-----------
Confidence 345689999999999999999989999999999999999999888733223569999999998875443
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
+..+|.|++- -+|+...- +...++...|++.+++.|+|||.+.+.. .+..+...
T Consensus 190 --------------------~~s~D~I~ln--FPdPW~Kk--rHRRlv~~~fL~e~~RvLkpGG~l~l~T--D~~~y~~~ 243 (390)
T PRK14121 190 --------------------SNSVEKIFVH--FPVPWDKK--PHRRVISEDFLNEALRVLKPGGTLELRT--DSELYFEF 243 (390)
T ss_pred --------------------CCceeEEEEe--CCCCcccc--chhhccHHHHHHHHHHHcCCCcEEEEEE--ECHHHHHH
Confidence 3679999983 23432111 2245677899999999999999988654 55566555
Q ss_pred HHHHHHHh
Q 004354 688 VISRMKMV 695 (759)
Q Consensus 688 v~~~l~~v 695 (759)
+++.+.+.
T Consensus 244 ~~e~~~~~ 251 (390)
T PRK14121 244 SLELFLKL 251 (390)
T ss_pred HHHHHHhC
Confidence 56666544
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5e-07 Score=91.31 Aligned_cols=133 Identities=18% Similarity=0.202 Sum_probs=102.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||..-.|-|..+.-..+. ....|..||.||.|+++|+-+= ++ .+.+++++.||+.++++...
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~-------- 202 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFD-------- 202 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCC--------
Confidence 45679999999999887655555 2339999999999999997553 33 24589999999999999876
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC----
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR---- 680 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~---- 680 (759)
+..||+||.|.--- + -+.++++.+|++.+.+.|+|||-+.=-+-.+
T Consensus 203 -----------------------D~sfDaIiHDPPRf--S-----~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry 252 (287)
T COG2521 203 -----------------------DESFDAIIHDPPRF--S-----LAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY 252 (287)
T ss_pred -----------------------ccccceEeeCCCcc--c-----hhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc
Confidence 47899999975221 1 2558999999999999999999887655333
Q ss_pred -ChhHHHHHHHHHHHh-cCceE
Q 004354 681 -SQATKDMVISRMKMV-FNHLF 700 (759)
Q Consensus 681 -~~~~~~~v~~~l~~v-F~~v~ 700 (759)
.......+.++|+++ |..|-
T Consensus 253 rG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 253 RGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred ccCChhHHHHHHHHhcCceeee
Confidence 345667889999888 54343
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-06 Score=91.07 Aligned_cols=116 Identities=11% Similarity=0.173 Sum_probs=83.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.+|+|+|.++..+...+|...++++|+++.+++.|++.+....-++++++.+|+.+.+ .
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~------------ 151 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---P------------ 151 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---c------------
Confidence 4468999999999999999999888899999999999999998863222247999999976532 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC-----------------hHHHHHHHHHccCcCc
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----------------EGSFLLTVKDALSEQG 671 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~-----------------~~~fl~~~~~~L~~~G 671 (759)
..+||+|+.+.--.... .+........ -..+++.+.+.|+|||
T Consensus 152 -------------------~~~fD~Vi~npPy~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG 211 (251)
T TIGR03534 152 -------------------GGKFDLIVSNPPYIPEA-DIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGG 211 (251)
T ss_pred -------------------CCceeEEEECCCCCchh-hhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCC
Confidence 25799999854111000 0000001111 1468899999999999
Q ss_pred EEEEEecC
Q 004354 672 LFIVNLVS 679 (759)
Q Consensus 672 ilv~N~~~ 679 (759)
.+++....
T Consensus 212 ~~~~~~~~ 219 (251)
T TIGR03534 212 WLLLEIGY 219 (251)
T ss_pred EEEEEECc
Confidence 99998743
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-06 Score=91.94 Aligned_cols=111 Identities=11% Similarity=0.065 Sum_probs=80.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCC---CCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~---~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.||+|+|.++..|...+ |..+|++||+++.|++.|++..... ..++++++.+|+.+. .
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l----p------- 140 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL----P------- 140 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC----C-------
Confidence 345799999999999998888775 5569999999999999998775321 235799999997543 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
..+..||+|++-. ....+ | --..+|+.+.+.|+|||.|++--+...
T Consensus 141 ----------------------~~~~sfD~V~~~~----~l~~~--~----d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 141 ----------------------FDDCYFDAITMGY----GLRNV--V----DRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred ----------------------CCCCCEeEEEEec----ccccC--C----CHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 1236799998721 11111 1 126799999999999998876554443
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-06 Score=87.56 Aligned_cols=133 Identities=19% Similarity=0.187 Sum_probs=90.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|+|.++..|....+..+|.+||+++.|++.+.+...- .+++.++.+|+........
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~~~~~~~------------ 137 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARKPERYAH------------ 137 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCCcchhhh------------
Confidence 44699999999999999999988756899999999998866555421 2568899999753100000
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC-------
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS------- 681 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~------- 681 (759)
-...||+|+.|+..++ ....+++.+++.|+|||.|++.+..+.
T Consensus 138 ------------------l~~~~D~i~~d~~~p~------------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~ 187 (226)
T PRK04266 138 ------------------VVEKVDVIYQDVAQPN------------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP 187 (226)
T ss_pred ------------------ccccCCEEEECCCChh------------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH
Confidence 0145999999764321 013468999999999999998643221
Q ss_pred hhHHHHHHHHHHHh-cCceEEEeec
Q 004354 682 QATKDMVISRMKMV-FNHLFCLQLE 705 (759)
Q Consensus 682 ~~~~~~v~~~l~~v-F~~v~~~~~~ 705 (759)
....+..++.+.+. |..+......
T Consensus 188 ~~~~~~~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 188 KEIFKEEIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 12234455667665 7766655543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.8e-06 Score=94.26 Aligned_cols=128 Identities=13% Similarity=0.158 Sum_probs=91.2
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC---CCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg---l~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.+||.||+|.|.+...+....|..+|++||+++.+++.|++.+. ....++++++.+|+...+ .
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~---~----------- 295 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---E----------- 295 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC---C-----------
Confidence 58999999999999999999999999999999999999998872 211247899999976432 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
..+||+|+.+. +-.. +.. .... ....++..+++.|+|||.|.+=. .+.-.
T Consensus 296 --------------------~~~fDlIlsNP--Pfh~-~~~-~~~~-ia~~l~~~a~~~LkpGG~L~iV~-nr~l~---- 345 (378)
T PRK15001 296 --------------------PFRFNAVLCNP--PFHQ-QHA-LTDN-VAWEMFHHARRCLKINGELYIVA-NRHLD---- 345 (378)
T ss_pred --------------------CCCEEEEEECc--Cccc-Ccc-CCHH-HHHHHHHHHHHhcccCCEEEEEE-ecCcC----
Confidence 24799999942 1110 000 0111 24678999999999999766542 23322
Q ss_pred HHHHHHHhcCceEEE
Q 004354 688 VISRMKMVFNHLFCL 702 (759)
Q Consensus 688 v~~~l~~vF~~v~~~ 702 (759)
....|++.|..+-.+
T Consensus 346 y~~~L~~~fg~~~~v 360 (378)
T PRK15001 346 YFHKLKKIFGNCTTI 360 (378)
T ss_pred HHHHHHHHcCCceEE
Confidence 346677789877553
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-06 Score=84.75 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=94.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.+|.|.|.++..+....+ ++++||++|.+++.|++.+... ..+++++.+|..+..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~---------------- 79 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGV---------------- 79 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccccccc----------------
Confidence 446899999999999998888754 8999999999999999987532 235788888865421
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCC-----------CCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA-----------ADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp-----------~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+||+|+.+..--........++ ..-+-..|++.+.+.|+|||.+++..
T Consensus 80 -------------------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 -------------------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred -------------------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 147999998541100000000000 00113678999999999999988876
Q ss_pred cCCChhHHHHHHHHHHHhcCceEEEeecCCccEEEEEe
Q 004354 678 VSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGL 715 (759)
Q Consensus 678 ~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~ 715 (759)
.+... ...++..|++.-=.+-.+...+-.++.+++.
T Consensus 141 ~~~~~--~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 141 SSLNG--EPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred eccCC--hHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 44332 2345666655432333333334456666654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.47 E-value=2e-06 Score=90.74 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=88.4
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
+.+||.+|.|.|.++..+....|..+|++||+||.+++.|++.+.. ..++++.+|..+++....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~---~~~~~~~~D~~~~l~~~~------------- 150 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD---AGGTVHEGDLYDALPTAL------------- 150 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH---cCCEEEEeechhhcchhc-------------
Confidence 4589999999999999999888888999999999999999998743 125889999877653321
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCC-CCC-CCCCcCCC--------CC--------ChHHHHHHHHHccCcCc
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSP-DSS-SGMTCPAA--------DF--------VEGSFLLTVKDALSEQG 671 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~-d~~-~g~scPp~--------~f--------~~~~fl~~~~~~L~~~G 671 (759)
..+||+|+.|.--- ... ..+ +|. .+ +-..++..+.+.|+|||
T Consensus 151 ------------------~~~fDlVv~NPPy~~~~~~~~~--~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG 210 (251)
T TIGR03704 151 ------------------RGRVDILAANAPYVPTDAIALM--PPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGG 210 (251)
T ss_pred ------------------CCCEeEEEECCCCCCchhhhcC--CHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCC
Confidence 14699999976211 100 001 111 11 12578888899999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHH
Q 004354 672 LFIVNLVSRSQATKDMVISRMKM 694 (759)
Q Consensus 672 ilv~N~~~~~~~~~~~v~~~l~~ 694 (759)
.+++=.... ....+...|++
T Consensus 211 ~l~l~~~~~---~~~~v~~~l~~ 230 (251)
T TIGR03704 211 HLLVETSER---QAPLAVEAFAR 230 (251)
T ss_pred EEEEEECcc---hHHHHHHHHHH
Confidence 999765322 23456666655
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-06 Score=89.39 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=94.4
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccC-CC-CcEEEEeecccC
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD-RS-DMRWRVMDMTSM 128 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~-~~-~i~f~~~D~~~~ 128 (759)
-...+..++.. .++.+|||.|.|+|.++.+|+.. |. .+|+..|+-+..++.|++++... .. ++++...|+.+.
T Consensus 82 D~~~I~~~~gi---~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~ 158 (256)
T COG2519 82 DAGYIVARLGI---SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG 158 (256)
T ss_pred CHHHHHHHcCC---CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc
Confidence 34456666654 78999999999999999999864 33 47999999999999999988652 23 388899999887
Q ss_pred C--CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhh
Q 004354 129 Q--GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL 176 (759)
Q Consensus 129 ~--gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l 176 (759)
. ..||+|+..-.. +.++++.+.++|+|||.+++.+..-+.+.+.+
T Consensus 159 ~~~~~vDav~LDmp~---PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~ 205 (256)
T COG2519 159 IDEEDVDAVFLDLPD---PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTV 205 (256)
T ss_pred ccccccCEEEEcCCC---hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Confidence 6 789999996544 46789999999999999999887655544443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.5e-06 Score=88.01 Aligned_cols=105 Identities=12% Similarity=0.249 Sum_probs=77.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhC--CCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~--p~~~i~~VEiDp~v~~vA~~~Fg-l~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||+|+|.+...+...+ |..++++||+++.|++.|++.+. .....+++++.+|..++ .
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~----~--------- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV----E--------- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----C---------
Confidence 45689999999999988888764 67899999999999999999863 22346799999998654 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
...+|+|++.. ...- +++.. -..+|+.+.+.|+|||.|++-
T Consensus 120 ----------------------~~~~d~v~~~~----~l~~--~~~~~--~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 120 ----------------------IKNASMVILNF----TLQF--LPPED--RIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred ----------------------CCCCCEEeeec----chhh--CCHHH--HHHHHHHHHHhcCCCeEEEEe
Confidence 13478776511 0000 01111 257999999999999988875
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5e-07 Score=104.93 Aligned_cols=99 Identities=17% Similarity=0.145 Sum_probs=79.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHH--hc------cCCCCcEEEEeecccCC----CcccE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRR--NV------RDRSDMRWRVMDMTSMQ----GGLDA 134 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r--~~------~~~~~i~f~~~D~~~~~----gtfD~ 134 (759)
++.+|||+|||+|..+..+++.+. .+|+++|+++.+++.++++ .. -..++++++..|..+.. ++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 467999999999999999988754 6899999999999999873 21 12478999999987743 78999
Q ss_pred EEeCCCChh------H-HHHHHHHHHHhcccCcEEEEEE
Q 004354 135 LMEPELGHK------L-GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 135 Ii~~~~~~~------~-~~~~l~ei~rvLkpGG~liiit 166 (759)
|+++...+. . ...+++.+++.|+|||.+++.+
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999653221 1 4578999999999999988765
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=9e-07 Score=96.39 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=81.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.||+|+|.+...|... +.+|++||+++.+++.|++++... ...++.++.+|+.++...
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~------------- 195 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE------------- 195 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc-------------
Confidence 3458999999999998888753 569999999999999999987542 235799999998665211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
+.+||+|+. .+...-+.. -..||+.+++.|+|||.|++..+.+.
T Consensus 196 --------------------~~~FD~Vi~----~~vLeHv~d------~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 196 --------------------GRKFDAVLS----LEVIEHVAN------PAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred --------------------cCCCCEEEE----hhHHHhcCC------HHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 357999997 111111111 26799999999999999998876554
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=100.03 Aligned_cols=122 Identities=9% Similarity=0.077 Sum_probs=83.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC-------CcccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-------GGLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~-------gtfD~Ii~~ 138 (759)
.++.+|||+|||+|.++..|++.+ ..|+|+|+++.+++.|++++... ..+++|+++|+.+.. ++||+|+.+
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 456799999999999999998874 56999999999999999877443 357999999986531 469999987
Q ss_pred CCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEe
Q 004354 139 ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 191 (759)
Q Consensus 139 ~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~ 191 (759)
.........+++.+.+ ++|++. +.++..+....+.+......+|.+.....
T Consensus 370 PPr~G~~~~~l~~l~~-l~~~~i-vyvsc~p~tlard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 370 PPRKGCAAEVLRTIIE-LKPERI-VYVSCNPATLARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred cCCCCCCHHHHHHHHh-cCCCEE-EEEcCCHHHHHHHHHHHHHCCeeEEEEEE
Confidence 6322223555665554 788764 45555543333332222234676655444
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.4e-06 Score=97.52 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=95.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+|.|.|..+..+.... +..+|++||+++.+++.+++.+ |+ .+++++.+|+.++.....
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~~-------- 318 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHEKFA-------- 318 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCcccccchhc--------
Confidence 34689999999999998888876 5679999999999999999876 54 249999999877643221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCC-CcCCCC-C------------ChHHHHHHHHHccCcC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM-TCPAAD-F------------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~-scPp~~-f------------~~~~fl~~~~~~L~~~ 670 (759)
..||+|++|+..+. .|+ .--|.. + +..++|..+.+.|+||
T Consensus 319 ------------------------~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 319 ------------------------EKFDKILVDAPCSG--LGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred ------------------------ccCCEEEEcCCCCC--CeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46999999985331 121 111111 1 2357899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhcC
Q 004354 671 GLFIVNLVSRSQATKDMVISRMKMVFN 697 (759)
Q Consensus 671 Gilv~N~~~~~~~~~~~v~~~l~~vF~ 697 (759)
|.|++...+-..+..+.++..+.+-.+
T Consensus 373 G~lvystcs~~~~Ene~vv~~~l~~~~ 399 (444)
T PRK14902 373 GILVYSTCTIEKEENEEVIEAFLEEHP 399 (444)
T ss_pred CEEEEEcCCCChhhhHHHHHHHHHhCC
Confidence 999988766555545556666555443
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.2e-07 Score=94.39 Aligned_cols=118 Identities=15% Similarity=0.130 Sum_probs=89.9
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~---~~i~f~~ 122 (759)
||.+....+..+..+. .+.+|||+-|=||.++.+.+..|...|++||.|..+++.+++++..++ ..++|++
T Consensus 107 lFlDqR~nR~~v~~~~------~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~ 180 (286)
T PF10672_consen 107 LFLDQRENRKWVRKYA------KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQ 180 (286)
T ss_dssp S-GGGHHHHHHHHHHC------TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEE
T ss_pred EcHHHHhhHHHHHHHc------CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEe
Confidence 6777777777777775 467999999999999999888898889999999999999999875443 4689999
Q ss_pred eecccCC------CcccEEEeCCCC--------hhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 123 MDMTSMQ------GGLDALMEPELG--------HKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 123 ~D~~~~~------gtfD~Ii~~~~~--------~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+|+.+.- ++||+|++.+.. ......++..+.++|+|||.+++.+.+.
T Consensus 181 ~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 181 GDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp S-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred cCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 9997743 799999996521 1236778899999999999998887653
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-06 Score=98.84 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=101.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
.+.+||.||.|.|+++..+...+|..+|++||++|.++++|++.. ++ +++++++.+|..+.+ .
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l--~~~v~~~~~D~~~~~---~--------- 203 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV--TDRIQIIHSNWFENI---E--------- 203 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC--ccceeeeecchhhhC---c---------
Confidence 346899999999999999988889899999999999999999886 44 468999999976542 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCC--CCC------CcCCCCCC--------hHHHHHHHHHccCc
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM------TCPAADFV--------EGSFLLTVKDALSE 669 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~--~g~------scPp~~f~--------~~~fl~~~~~~L~~ 669 (759)
..+||+|+.+.---... ..+ .-|...+. -..+++.+.+.|+|
T Consensus 204 ----------------------~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~ 261 (506)
T PRK01544 204 ----------------------KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP 261 (506)
T ss_pred ----------------------CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC
Confidence 24699999854100000 001 01212222 23467788899999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHH-hcCceEEEeecCCccEEEEEecCC
Q 004354 670 QGLFIVNLVSRSQATKDMVISRMKM-VFNHLFCLQLEEDVNLVLFGLSSE 718 (759)
Q Consensus 670 ~Gilv~N~~~~~~~~~~~v~~~l~~-vF~~v~~~~~~~~~N~Vl~a~~~~ 718 (759)
||.|++-+. .+ ..+.+.+.+.+ -|..+..++--.+...++++....
T Consensus 262 gG~l~lEig-~~--q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~~~~ 308 (506)
T PRK01544 262 NGKIILEIG-FK--QEEAVTQIFLDHGYNIESVYKDLQGHSRVILISPIN 308 (506)
T ss_pred CCEEEEEEC-Cc--hHHHHHHHHHhcCCCceEEEecCCCCceEEEecccc
Confidence 999998653 22 22344555544 355444444344567788887765
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.3e-07 Score=78.90 Aligned_cols=94 Identities=15% Similarity=0.234 Sum_probs=70.7
Q ss_pred EEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccc
Q 004354 534 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 613 (759)
Q Consensus 534 LviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~ 613 (759)
|.||.|.|..+..|... +..+++++|+++.+++.|++.+. ..++.++.+|+.++ .
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~---~~~~~~~~~d~~~l--~------------------- 55 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK---NEGVSFRQGDAEDL--P------------------- 55 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT---TSTEEEEESBTTSS--S-------------------
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc---ccCchheeehHHhC--c-------------------
Confidence 78999999999999998 78899999999999999999985 35567888885544 1
Q ss_pred cCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-ChHHHHHHHHHccCcCcEEEE
Q 004354 614 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 614 ~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-~~~~fl~~~~~~L~~~Gilv~ 675 (759)
..+..||+|+.- .. . ..+ --..+++.+++.|+|||.+++
T Consensus 56 ------------~~~~sfD~v~~~--~~--~-------~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 56 ------------FPDNSFDVVFSN--SV--L-------HHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ------------S-TT-EEEEEEE--SH--G-------GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------cccccccccccc--cc--e-------eeccCHHHHHHHHHHHcCcCeEEeC
Confidence 124789999871 11 0 111 236799999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=95.91 Aligned_cols=120 Identities=8% Similarity=0.109 Sum_probs=83.7
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----gtfD~Ii~~~~~~ 142 (759)
++.+|||+|||+|.++..++..+ ..|+|+|+++.+++.+++++.... .+++|.++|+.+.. +.||+|++++.-.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45789999999999999999876 469999999999999988774433 47999999987643 5699999976432
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeC
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 192 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~ 192 (759)
.....+++.+.+ ++|++.++ ++..+..+.+.+-.. .+|.+......
T Consensus 312 G~~~~~l~~l~~-~~p~~ivy-vsc~p~TlaRDl~~L--~gy~l~~~~~~ 357 (374)
T TIGR02085 312 GIGKELCDYLSQ-MAPKFILY-SSCNAQTMAKDIAEL--SGYQIERVQLF 357 (374)
T ss_pred CCcHHHHHHHHh-cCCCeEEE-EEeCHHHHHHHHHHh--cCceEEEEEEe
Confidence 224455555543 68876544 444444333333222 46777665543
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.9e-06 Score=91.54 Aligned_cols=150 Identities=14% Similarity=0.118 Sum_probs=97.4
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.||.|.|.++..+....|..++++||++|.++++|++..... ..+++++.+|..+.. ..
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-g~rV~fi~gDl~e~~--l~------------- 315 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-GARVEFAHGSWFDTD--MP------------- 315 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEcchhccc--cc-------------
Confidence 35899999999999999988888889999999999999999987321 247999999965431 00
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCC-CCCCCCC------cCCCCCC--------hHHHHHHHHHccCcCcEEE
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSP-DSSSGMT------CPAADFV--------EGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~-d~~~g~s------cPp~~f~--------~~~fl~~~~~~L~~~Gilv 674 (759)
...+||+|+.+.--- .....+. -|...+. -..++..+.+.|+|||.++
T Consensus 316 -----------------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 316 -----------------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred -----------------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 024699999965210 0000000 1111121 2367777788999999988
Q ss_pred EEecCCChhHHHHHHHHHHHh-cCceEEEeecCCccEEEEEe
Q 004354 675 VNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGL 715 (759)
Q Consensus 675 ~N~~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~ 715 (759)
+=+.. ...+.+.+.+.+. |..+-..+--.+..+++++.
T Consensus 379 lEiG~---~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 379 LEHGF---DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred EEECc---cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 65522 2234455555553 55554444334556777764
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-06 Score=86.08 Aligned_cols=143 Identities=14% Similarity=0.189 Sum_probs=96.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH--HHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~--l~~~~~~~~~~~~~ 605 (759)
...+||.||.|+|..+..+.+..+ ...|++||++|. ...+.++++.+|..+. +.+...
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~-------- 111 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLE-------- 111 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHH--------
Confidence 346899999999999998888864 469999999992 1124589999997663 222210
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-----ChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-----~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
......||+|+.|....- .|. |.... +...+|+.+.+.|+|||.|++-++..
T Consensus 112 -------------------~~~~~~~D~V~S~~~~~~--~g~--~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 112 -------------------RVGDSKVQVVMSDMAPNM--SGT--PAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred -------------------HhCCCCCCEEecCCCCcc--CCC--hHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 011367999999763221 111 11010 12568999999999999999977544
Q ss_pred ChhHHHHHHHHHHHhcCceEEEeec----CCccEEEEEe
Q 004354 681 SQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGL 715 (759)
Q Consensus 681 ~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~Vl~a~ 715 (759)
.. ...++..++..|..+..++.. +.....++|.
T Consensus 169 ~~--~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~ 205 (209)
T PRK11188 169 EG--FDEYLREIRSLFTKVKVRKPDSSRARSREVYIVAT 205 (209)
T ss_pred cC--HHHHHHHHHhCceEEEEECCccccccCceeEEEee
Confidence 32 235688999999998888743 2334445554
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-06 Score=89.65 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=84.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.||+|+|-++..+.+..+..+|+++|+++.|+++|++...=..-..++++++||.+.-
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP---------------- 114 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP---------------- 114 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC----------------
Confidence 5689999999999999999999888899999999999999999973211122999999987751
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.++..||++.+.- ....++- -+..|+.+.+.|+|||.+++.=...
T Consensus 115 -----------------f~D~sFD~vt~~f----glrnv~d------~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 115 -----------------FPDNSFDAVTISF----GLRNVTD------IDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred -----------------CCCCccCEEEeee----hhhcCCC------HHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 2357899999821 1111211 2679999999999999888765444
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-06 Score=89.81 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=90.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHH--HHHhhcccCcc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIK--FVREMKSSSAT 601 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~--~l~~~~~~~~~ 601 (759)
....+||..|.|.|+|+.+|.+.. |..+|...|+.++.++.|++.| |+ ++++++++.|..+ |..+
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl--~~~v~~~~~Dv~~~g~~~~------- 109 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL--DDNVTVHHRDVCEEGFDEE------- 109 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC--CTTEEEEES-GGCG--STT-------
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC--CCCceeEecceeccccccc-------
Confidence 445799999999999999888654 7779999999999999999988 65 5689999999652 2001
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHcc-CcCcEEEEEecCC
Q 004354 602 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDAL-SEQGLFIVNLVSR 680 (759)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L-~~~Gilv~N~~~~ 680 (759)
-...+|+||+|+-++ .+.+..+++.| ++||.+++=+ +
T Consensus 110 -------------------------~~~~~DavfLDlp~P---------------w~~i~~~~~~L~~~gG~i~~fs--P 147 (247)
T PF08704_consen 110 -------------------------LESDFDAVFLDLPDP---------------WEAIPHAKRALKKPGGRICCFS--P 147 (247)
T ss_dssp --------------------------TTSEEEEEEESSSG---------------GGGHHHHHHHE-EEEEEEEEEE--S
T ss_pred -------------------------ccCcccEEEEeCCCH---------------HHHHHHHHHHHhcCCceEEEEC--C
Confidence 125799999999554 56889999999 8999998665 4
Q ss_pred ChhHHHHHHHHHHH-hcCceEEE
Q 004354 681 SQATKDMVISRMKM-VFNHLFCL 702 (759)
Q Consensus 681 ~~~~~~~v~~~l~~-vF~~v~~~ 702 (759)
+-+.....+..|++ -|..+-.+
T Consensus 148 ~ieQv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 148 CIEQVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp SHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCeeeEEE
Confidence 44444556777766 46655443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.42 E-value=2e-06 Score=88.98 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=82.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+.+||.||.|.|.++..+....|..+++++|+++.+++.|++.+. ++++++.+|..+.. .
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~--~------------ 94 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLP--L------------ 94 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCC--C------------
Confidence 34578999999999999999999998899999999999999999875 37889999875431 0
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
....||+|+....-. .. + -...+|..+++.|+|||.|++.....
T Consensus 95 -------------------~~~~fD~vi~~~~l~----~~---~---~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 95 -------------------EDSSFDLIVSNLALQ----WC---D---DLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred -------------------CCCceeEEEEhhhhh----hc---c---CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 135799999842110 00 0 12579999999999999999876544
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-06 Score=91.04 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=89.4
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEe-ecccC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVM-DMTSM 128 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~-D~~~~ 128 (759)
+.+...+..+... .++..|||.=||||.+.....-.|.. ++|+|++..|++-++.++..-+ ....+... |++++
T Consensus 183 P~lAR~mVNLa~v---~~G~~vlDPFcGTGgiLiEagl~G~~-viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 183 PRLARAMVNLARV---KRGELVLDPFCGTGGILIEAGLMGAR-VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred HHHHHHHHHHhcc---ccCCEeecCcCCccHHHHhhhhcCce-EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 4555555555544 67889999999999999988777885 9999999999999988875543 34545555 99988
Q ss_pred C---CcccEEEeCCC-----------ChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 129 Q---GGLDALMEPEL-----------GHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 129 ~---gtfD~Ii~~~~-----------~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+ .++|+|++.+. ......++|+.++++|++||++++...
T Consensus 259 pl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 259 PLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 8 45999999651 123388999999999999999999886
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.6e-06 Score=85.70 Aligned_cols=116 Identities=22% Similarity=0.186 Sum_probs=80.2
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSM 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~ 128 (759)
++...+.+.+....-..+..|||+|||+|..+..++.. +-..|++||.|+.++..|.++.... ...+..++.+++..
T Consensus 132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d 211 (328)
T KOG2904|consen 132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESD 211 (328)
T ss_pred HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccc
Confidence 33344444443311123457999999999999998865 3335999999999999998876442 23455554444332
Q ss_pred C--------CcccEEEeCCC----------------------------ChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 129 Q--------GGLDALMEPEL----------------------------GHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 129 ~--------gtfD~Ii~~~~----------------------------~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
. +++|+++|+.. .......++.-+.|.|+|||.+.+..-
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1 89999999640 112267788889999999999888765
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.3e-06 Score=95.92 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=97.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.+|.|.|+.+..+...++..+|+++|+++.+++.+++.+ |+. .++.++.+|+.......
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~--~~v~~~~~d~~~~~~~~---------- 305 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT--IKAETKDGDGRGPSQWA---------- 305 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeccccccccccc----------
Confidence 446899999999999999998887679999999999999999886 552 23444666654321100
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCC-CcCCCC-C------------ChHHHHHHHHHccCcCc
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM-TCPAAD-F------------VEGSFLLTVKDALSEQG 671 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~-scPp~~-f------------~~~~fl~~~~~~L~~~G 671 (759)
....||.|++|+-.+.. |+ .--|.. . +..++|..+.+.|+|||
T Consensus 306 ---------------------~~~~fD~VllDaPcSg~--G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG 362 (426)
T TIGR00563 306 ---------------------ENEQFDRILLDAPCSAT--GVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGG 362 (426)
T ss_pred ---------------------cccccCEEEEcCCCCCC--cccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 12579999999854421 22 111211 1 14679999999999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhcCce
Q 004354 672 LFIVNLVSRSQATKDMVISRMKMVFNHL 699 (759)
Q Consensus 672 ilv~N~~~~~~~~~~~v~~~l~~vF~~v 699 (759)
.|++...+-..+.-+.++..+.+-++..
T Consensus 363 ~lvystcs~~~~Ene~~v~~~l~~~~~~ 390 (426)
T TIGR00563 363 TLVYATCSVLPEENSEQIKAFLQEHPDF 390 (426)
T ss_pred EEEEEeCCCChhhCHHHHHHHHHhCCCC
Confidence 9999987777666667787777766653
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=4e-06 Score=88.50 Aligned_cols=119 Identities=11% Similarity=0.083 Sum_probs=82.3
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-C
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-G 130 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-g 130 (759)
.+...+.+.+.. .++.+|||+|||+|.++..|++.+. .|+++|+++.+++.++++... .++++++++|+.+.+ .
T Consensus 16 ~i~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 16 SVIQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCChh
Confidence 344445554443 5678999999999999999999865 599999999999998877633 568999999999887 5
Q ss_pred ccc---EEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccc
Q 004354 131 GLD---ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPK 179 (759)
Q Consensus 131 tfD---~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~ 179 (759)
.+| .|+++-. ......++..+.. .+|+..+++.+ |..+..++...
T Consensus 91 ~~d~~~~vvsNlP-y~i~~~il~~ll~--~~~~~~~~~~~-q~e~a~Rl~a~ 138 (253)
T TIGR00755 91 DFPKQLKVVSNLP-YNISSPLIFKLLE--KPKFRLAVLMV-QKEVAERLTAK 138 (253)
T ss_pred HcCCcceEEEcCC-hhhHHHHHHHHhc--cCCCceEEEEe-hHHHHHHHccC
Confidence 577 7776543 3334444444443 55655555544 44455555443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.2e-06 Score=93.75 Aligned_cols=110 Identities=11% Similarity=0.158 Sum_probs=79.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-C-CCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-D-KSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~-~-~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+||.+|.|+|++...+... +..+|++||+++..++.|++++.+.. + ++++++.+|+.+++++...
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~---------- 289 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---------- 289 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh----------
Confidence 478999999999986544432 34499999999999999999984321 2 4799999999999977541
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC-----hHHHHHHHHHccCcCcEEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~-----~~~fl~~~~~~L~~~Gilv~ 675 (759)
.+.+||+||+|...-... ...+. -.+++..+.++|+|||+|+.
T Consensus 290 -------------------~~~~fDlVilDPP~f~~~------k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~ 337 (396)
T PRK15128 290 -------------------RGEKFDVIVMDPPKFVEN------KSQLMGACRGYKDINMLAIQLLNPGGILLT 337 (396)
T ss_pred -------------------cCCCCCEEEECCCCCCCC------hHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 135799999976432110 00111 13456678899999998885
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.4e-06 Score=91.22 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=93.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.||+|.|.++..+....|..+|++||+++.+++.|++.+... .-..+++.+|+...+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-~l~~~~~~~D~~~~~----------------- 258 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-GLEGEVFASNVFSDI----------------- 258 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCEEEEccccccc-----------------
Confidence 35899999999999999999999889999999999999999887431 123567777765421
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHH
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 689 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~ 689 (759)
..+||+|+.+. +-. .++. ...-....|+..+.+.|+|||.|++=. .+.-. +.
T Consensus 259 ------------------~~~fDlIvsNP--PFH-~g~~--~~~~~~~~~i~~a~~~LkpgG~L~iVa-n~~l~-y~--- 310 (342)
T PRK09489 259 ------------------KGRFDMIISNP--PFH-DGIQ--TSLDAAQTLIRGAVRHLNSGGELRIVA-NAFLP-YP--- 310 (342)
T ss_pred ------------------CCCccEEEECC--Ccc-CCcc--ccHHHHHHHHHHHHHhcCcCCEEEEEE-eCCCC-hH---
Confidence 25799999942 110 0110 000123789999999999999775321 12222 12
Q ss_pred HHHHHhcCceEEEeecCCccEEEEEecC
Q 004354 690 SRMKMVFNHLFCLQLEEDVNLVLFGLSS 717 (759)
Q Consensus 690 ~~l~~vF~~v~~~~~~~~~N~Vl~a~~~ 717 (759)
..+.+.|.++-.+. .+..=.|+-|.+.
T Consensus 311 ~~l~~~Fg~~~~la-~~~~f~v~~a~~~ 337 (342)
T PRK09489 311 DLLDETFGSHEVLA-QTGRFKVYRAIMT 337 (342)
T ss_pred HHHHHHcCCeEEEE-eCCCEEEEEEEcc
Confidence 34456798865554 3334456656543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.5e-06 Score=104.89 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=82.9
Q ss_pred CCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC-----------------CCcEEEEeecccCC-
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-----------------SDMRWRVMDMTSMQ- 129 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~-----------------~~i~f~~~D~~~~~- 129 (759)
+.+|||+|||+|.++..++.... .+|+|+|+|+.+++.|++++.... .+++|+++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35899999999999999988743 479999999999999988875321 35899999987754
Q ss_pred ---CcccEEEeCCC--------------C-h---------------------h----HHHHHHHHHHHhcccCcEEEEEE
Q 004354 130 ---GGLDALMEPEL--------------G-H---------------------K----LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 130 ---gtfD~Ii~~~~--------------~-~---------------------~----~~~~~l~ei~rvLkpGG~liiit 166 (759)
+.||+|+++.. . + . ...+++.++.++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 26999999641 0 0 0 03678889999999999988765
Q ss_pred cC-chhhhh-hhccc
Q 004354 167 LA-ESHVLG-LLFPK 179 (759)
Q Consensus 167 ~~-~~~~~~-~l~~~ 179 (759)
-. |..... .++..
T Consensus 279 G~~q~~~v~~~l~~~ 293 (1082)
T PLN02672 279 GGRPGQAVCERLFER 293 (1082)
T ss_pred CccHHHHHHHHHHHH
Confidence 43 333333 45554
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-06 Score=87.54 Aligned_cols=109 Identities=12% Similarity=0.203 Sum_probs=76.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|||.|+..+++.- ..|+++|+++..+++|+.|---. .=.+........+...
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~-gv~i~y~~~~~edl~~--------------- 120 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALES-GVNIDYRQATVEDLAS--------------- 120 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhc-cccccchhhhHHHHHh---------------
Confidence 34799999999999999999884 79999999999999999886210 0012233333222211
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
.+++||+|++ -+-..-+.-| ..|++.|.++++|||++++-.+.|+..
T Consensus 121 ------------------~~~~FDvV~c----mEVlEHv~dp------~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 121 ------------------AGGQFDVVTC----MEVLEHVPDP------ESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred ------------------cCCCccEEEE----hhHHHccCCH------HHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 1368999997 2211111112 569999999999999999887777644
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.3e-06 Score=82.49 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=92.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH--HHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~--l~~~~~~~~~~~~ 604 (759)
....+||+||.|+|.++..+...+ +..+|++||++|.+ .+ ++++++.+|..+. +.....
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~---~~i~~~~~d~~~~~~~~~l~~------- 92 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI---ENVDFIRGDFTDEEVLNKIRE------- 92 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC---CCceEEEeeCCChhHHHHHHH-------
Confidence 345789999999999998887776 45689999999965 22 4578888886432 111110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC----ChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f----~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.....+||+|+.|... +..|..+. .+. .-..++..+.+.|+|||.+++.....
T Consensus 93 --------------------~~~~~~~D~V~~~~~~--~~~g~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 93 --------------------RVGDDKVDVVMSDAAP--NISGYWDI-DHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred --------------------HhCCCCccEEEcCCCC--CCCCCccc-cHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 0013579999997521 11111000 011 12578999999999999999976443
Q ss_pred ChhHHHHHHHHHHHhcCceEEEee--cCCcc--EEEEEe
Q 004354 681 SQATKDMVISRMKMVFNHLFCLQL--EEDVN--LVLFGL 715 (759)
Q Consensus 681 ~~~~~~~v~~~l~~vF~~v~~~~~--~~~~N--~Vl~a~ 715 (759)
.. ...++..++..|..+..++. ..+.| .+++|.
T Consensus 150 ~~--~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 150 EE--IDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred cc--HHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence 22 23578888888977666653 33333 355554
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2e-06 Score=95.44 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=93.9
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~---~~i~f~~ 122 (759)
+|.+....+..+.+++ .+.+||++-|=||.++.+.+..|.++||+||.|..+++.+++++.-++ ....|++
T Consensus 201 fFlDqR~~R~~l~~~~------~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~ 274 (393)
T COG1092 201 FFLDQRDNRRALGELA------AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIV 274 (393)
T ss_pred eeHHhHHHHHHHhhhc------cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeeh
Confidence 3444444555555554 378999999999999999999999889999999999999999875543 3478999
Q ss_pred eecccCC-------CcccEEEeCCCC-----------hhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 123 MDMTSMQ-------GGLDALMEPELG-----------HKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 123 ~D~~~~~-------gtfD~Ii~~~~~-----------~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+|+.++- .+||+|+..+.. ......++..+.++|+|||.+++.+...
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 9998875 499999996511 1126788899999999999999998653
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-06 Score=89.06 Aligned_cols=91 Identities=18% Similarity=0.287 Sum_probs=70.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCCh--
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGH-- 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~-- 142 (759)
...++||||+|.|..+..|+.. |++|++.++|+.|....+++ + |.+.|..++. ..||+|.|.+...
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g----~~vl~~~~w~~~~~~fDvIscLNvLDRc 164 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G----FTVLDIDDWQQTDFKFDVISCLNVLDRC 164 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C----CeEEehhhhhccCCceEEEeehhhhhcc
Confidence 4568999999999999999776 88899999999776544433 2 3344444444 6899999987443
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
..+..+|+.+++.|+|+|++++...
T Consensus 165 ~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 165 DRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred CCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 2389999999999999999887753
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-06 Score=90.33 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=80.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|.|.++..|...+ ..++++||++|.+++.|++.+.. .++++++.+|+.+. .
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~----~----------- 112 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKK----D----------- 112 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccC----C-----------
Confidence 345799999999999988887765 45999999999999999998764 56899999997531 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE-cCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~-D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
..+..||+|+. ++.-- + +... -..+|+.+.+.|+|||.|++.-+.
T Consensus 113 ------------------~~~~~FD~V~s~~~l~h-----~--~~~d--~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 113 ------------------FPENTFDMIYSRDAILH-----L--SYAD--KKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred ------------------CCCCCeEEEEEhhhHHh-----C--CHHH--HHHHHHHHHHHcCCCcEEEEEEec
Confidence 11367999997 32111 0 1111 267999999999999999987543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.1e-07 Score=93.00 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=70.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..+.+||.+|.|+|.++..|.+.. |..+|++||+++.|+++|++...-....+++++.+||.+.- .
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp--~----------- 112 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP--F----------- 112 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----S-----------
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc--C-----------
Confidence 456799999999999998888775 56799999999999999998863211248999999987641 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-ChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-~~~~fl~~~~~~L~~~Gilv~N 676 (759)
.+..||+|.+ .- |+. .+ --...|+.+.+.|+|||.|++-
T Consensus 113 --------------------~d~sfD~v~~----~f---glr----n~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 113 --------------------PDNSFDAVTC----SF---GLR----NFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp ---------------------TT-EEEEEE----ES----GG----G-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------CCCceeEEEH----Hh---hHH----hhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 2478999998 11 221 11 1367999999999999977754
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.2e-06 Score=94.17 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=97.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+|.|.|..+.++...++ ..+|++||+++.+++.|++.+ |+ ++++++.+|+..+. .
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~---~-------- 315 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS---P-------- 315 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc---c--------
Confidence 346899999999999888887764 358999999999999999887 54 36999999987652 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcC-CC---CC----------ChHHHHHHHHHccCcC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AA---DF----------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scP-p~---~f----------~~~~fl~~~~~~L~~~ 670 (759)
...||+|++|+-.+. .|+..- |. .+ ....+|..+.+.|+||
T Consensus 316 -----------------------~~~fD~Vl~D~Pcsg--~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 316 -----------------------EEQPDAILLDAPCTG--TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred -----------------------CCCCCEEEEcCCCCC--cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 246999999975432 122111 11 11 1346899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhcCc
Q 004354 671 GLFIVNLVSRSQATKDMVISRMKMVFNH 698 (759)
Q Consensus 671 Gilv~N~~~~~~~~~~~v~~~l~~vF~~ 698 (759)
|.+++...+-..+.-+.++..+.+..+.
T Consensus 371 G~lvystcs~~~~Ene~~v~~~l~~~~~ 398 (445)
T PRK14904 371 GVLVYATCSIEPEENELQIEAFLQRHPE 398 (445)
T ss_pred cEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 9999998777766666777777665544
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-06 Score=90.28 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=73.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||.|+|..+..|...... ..|++||++|.+++.|++.+.-..-.++.++++||..-...
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~------------ 138 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE------------ 138 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG------------
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc------------
Confidence 34579999999999999999888644 47999999999999999998321224899999998764322
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
...||.|++.+-..+ .| ..+.+.|++||.||+-+-.
T Consensus 139 ---------------------~apfD~I~v~~a~~~-------ip---------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 139 ---------------------EAPFDRIIVTAAVPE-------IP---------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp ---------------------G-SEEEEEESSBBSS------------------HHHHHTEEEEEEEEEEESS
T ss_pred ---------------------CCCcCEEEEeeccch-------HH---------HHHHHhcCCCcEEEEEEcc
Confidence 257999999543321 12 3355669999999998854
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-06 Score=78.64 Aligned_cols=95 Identities=17% Similarity=0.280 Sum_probs=69.4
Q ss_pred EEEEcccccHHHHHHHHhC---CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 533 AVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 533 vLviGlG~G~l~~~L~~~~---p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
||.+|.|+|...+.+...+ |..++++||+++.+++.|++++.- ...+++++++|+.++- ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-~~~~~~~~~~D~~~l~-~~-------------- 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-DGPKVRFVQADARDLP-FS-------------- 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-TTTTSEEEESCTTCHH-HH--------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-cCCceEEEECCHhHCc-cc--------------
Confidence 6899999999999999887 457999999999999999999832 1237999999997752 21
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC---hHHHHHHHHHccCcCc
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQG 671 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~---~~~fl~~~~~~L~~~G 671 (759)
..+||+|+. .. . .-..|- -..+++.+.++|+|||
T Consensus 65 ------------------~~~~D~v~~----~~----~--~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 65 ------------------DGKFDLVVC----SG----L--SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ------------------SSSEEEEEE-----T----T--GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ------------------CCCeeEEEE----cC----C--ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 258999999 10 0 012222 2678999999999998
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.9e-06 Score=89.64 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=65.3
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-C
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-G 130 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-g 130 (759)
.+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++++... ++++++++|+.+++ .
T Consensus 29 ~i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 29 NILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCHH
Confidence 344445555543 5678999999999999999999876 699999999999999877632 68999999999887 3
Q ss_pred c--ccEEEeCC
Q 004354 131 G--LDALMEPE 139 (759)
Q Consensus 131 t--fD~Ii~~~ 139 (759)
. +|.|+++.
T Consensus 103 ~~~~~~vv~Nl 113 (272)
T PRK00274 103 ELQPLKVVANL 113 (272)
T ss_pred HcCcceEEEeC
Confidence 3 48888764
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-06 Score=85.35 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=69.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeecccCC-------CcccE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSMQ-------GGLDA 134 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~----~~i~f~~~D~~~~~-------gtfD~ 134 (759)
..+.+|||+|||+|..+..++.. +..+|+..|..+ +++.++.+..... .++.+...|..+.. +.||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45789999999999999999888 667899999999 9988888775533 56788888765421 58999
Q ss_pred EEeCCCCh--hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 135 LMEPELGH--KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 135 Ii~~~~~~--~~~~~~l~ei~rvLkpGG~liiit 166 (759)
|++.+... .....+++.+.++|+++|.+++..
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99987433 348999999999999999844443
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.8e-06 Score=92.46 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=92.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|.|..+..+....+..+|+++|+++.+++.+++.+.-. +-+++++.+|+.+......
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-g~~~~~~~~D~~~~~~~~~------------ 310 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-GLKATVIVGDARDPAQWWD------------ 310 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEcCcccchhhcc------------
Confidence 446899999999999999998887679999999999999999887221 1236899999876422111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--------------ChHHHHHHHHHccCcCcEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--------------~~~~fl~~~~~~L~~~Gilv 674 (759)
..+||.|++|+..+. .|.....+.. +...+|..+.+.|+|||.++
T Consensus 311 -------------------~~~fD~Vl~D~Pcs~--~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv 369 (427)
T PRK10901 311 -------------------GQPFDRILLDAPCSA--TGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL 369 (427)
T ss_pred -------------------cCCCCEEEECCCCCc--ccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 256999999985432 1211111111 12478999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHh
Q 004354 675 VNLVSRSQATKDMVISRMKMV 695 (759)
Q Consensus 675 ~N~~~~~~~~~~~v~~~l~~v 695 (759)
+...+-.....+.++..+.+-
T Consensus 370 ystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 370 YATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred EEeCCCChhhCHHHHHHHHHh
Confidence 887655444444555554443
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.2e-06 Score=93.18 Aligned_cols=105 Identities=15% Similarity=0.243 Sum_probs=79.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..|...+ ..+|++||+++.+++.|++.. |+ .++++++++|+.+. .
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~--~~~v~~~~~D~~~~----~-------- 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL--SDKVSFQVADALNQ----P-------- 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEcCcccC----C--------
Confidence 345789999999999999998876 569999999999999998875 33 46799999997653 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
..+..||+|+.- ....-+ | -...+++.+.+.|+|||.|++-.+
T Consensus 182 ---------------------~~~~~FD~V~s~----~~~~h~--~----d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 182 ---------------------FEDGQFDLVWSM----ESGEHM--P----DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ---------------------CCCCCccEEEEC----Cchhcc--C----CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 113679999971 111111 1 125799999999999999987544
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.8e-08 Score=86.45 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=58.1
Q ss_pred EEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccc
Q 004354 534 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 613 (759)
Q Consensus 534 LviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~ 613 (759)
|.||.|+|.+...|...+|..++++||++|.+++.|++.+.-...........+-.+.....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 62 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD------------------ 62 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC------------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc------------------
Confidence 68999999999999999999999999999999999988873222222222222211111110
Q ss_pred cCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEE
Q 004354 614 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 673 (759)
Q Consensus 614 ~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gil 673 (759)
...+||+|+. .....-+ + --.++|+.+++.|+|||+|
T Consensus 63 -------------~~~~fD~V~~----~~vl~~l----~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 63 -------------PPESFDLVVA----SNVLHHL----E--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -------------C----SEEEE----E-TTS------S---HHHHHHHHTTT-TSS-EE
T ss_pred -------------cccccceehh----hhhHhhh----h--hHHHHHHHHHHHcCCCCCC
Confidence 1258999997 1111111 1 1268999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.2e-06 Score=90.84 Aligned_cols=84 Identities=8% Similarity=0.132 Sum_probs=67.8
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-C
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-G 130 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-g 130 (759)
.+...+...+.. .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++... .++++++++|+.+++ .
T Consensus 16 ~~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 16 RVVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCCch
Confidence 444455555443 5678999999999999999999854 699999999999999887643 468999999999877 6
Q ss_pred cccEEEeCCC
Q 004354 131 GLDALMEPEL 140 (759)
Q Consensus 131 tfD~Ii~~~~ 140 (759)
.||.|+++..
T Consensus 91 ~~d~Vv~NlP 100 (258)
T PRK14896 91 EFNKVVSNLP 100 (258)
T ss_pred hceEEEEcCC
Confidence 7899998753
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.6e-07 Score=92.80 Aligned_cols=170 Identities=17% Similarity=0.193 Sum_probs=119.0
Q ss_pred CCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChhH-
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHKL- 144 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~- 144 (759)
...++|||||-|.+..+|...|..+++-+|.|-.|++.++..- ...-.+.+.+.|-+.++ +++|+|+++-..||.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~N 151 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTN 151 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCceEEEEEecchhcccccccchhhhhhhhhhhhhc
Confidence 4579999999999999999999988999999999998875532 22234677788877766 899999998888887
Q ss_pred -HHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCCccccceeee-
Q 004354 145 -GNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSS- 222 (759)
Q Consensus 145 -~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~~~~~~~~~~- 222 (759)
....+..++..|||+|.|+...++.+... ++.... ...+......-++...+|.-|-.-+.-+....+..+
T Consensus 152 dLPg~m~~ck~~lKPDg~FiasmlggdTLy-ELR~sl------qLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~t 224 (325)
T KOG2940|consen 152 DLPGSMIQCKLALKPDGLFIASMLGGDTLY-ELRCSL------QLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLT 224 (325)
T ss_pred cCchHHHHHHHhcCCCccchhHHhccccHH-HHHHHh------hHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccce
Confidence 78889999999999999999888765332 221111 111111111113344455444222222222334334
Q ss_pred cCCCCCccCccchhhHHHHHHhhh
Q 004354 223 FDHSSLDCNKNQAFGIHEALESEN 246 (759)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~ 246 (759)
.|.++....++.+.+|++.++.-.
T Consensus 225 vDtDEi~v~Yp~mfeLm~dLq~Mg 248 (325)
T KOG2940|consen 225 VDTDEIVVGYPRMFELMEDLQGMG 248 (325)
T ss_pred ecccceeecCchHHHHHHHHHhhc
Confidence 677888899999999999988644
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-06 Score=90.28 Aligned_cols=106 Identities=15% Similarity=0.274 Sum_probs=76.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++.++.+.+ +.+|++|.++++-.+.|++.. |+ .++++|..+|-.++ .
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl--~~~v~v~~~D~~~~----~-------- 125 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL--EDRVEVRLQDYRDL----P-------- 125 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS--SSTEEEEES-GGG--------------
T ss_pred CCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEeecccc----C--------
Confidence 456799999999999999999997 679999999999999999887 55 57899999986543 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC---ChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF---VEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f---~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
.+||.|+. + +| -.++ .-+.|++.+.+.|+|||.+++..++..
T Consensus 126 ------------------------~~fD~IvS-i-------~~---~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 126 ------------------------GKFDRIVS-I-------EM---FEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp -------------------------S-SEEEE-E-------SE---GGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred ------------------------CCCCEEEE-E-------ec---hhhcChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 47999886 1 22 1222 226899999999999999998876654
Q ss_pred hh
Q 004354 682 QA 683 (759)
Q Consensus 682 ~~ 683 (759)
..
T Consensus 171 ~~ 172 (273)
T PF02353_consen 171 DP 172 (273)
T ss_dssp -H
T ss_pred cc
Confidence 43
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.2e-06 Score=87.49 Aligned_cols=119 Identities=12% Similarity=0.178 Sum_probs=84.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.+|.|.|.++..+... +..+|++||+||.+++.|++++... -.+++.++.+|... .
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~----~------------ 221 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ----P------------ 221 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc----c------------
Confidence 3479999999999999887765 4459999999999999999987432 13456777666211 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
...+||+|+.++... . -..++..+.+.|+|||.|++--+.. .....
T Consensus 222 -------------------~~~~fDlVvan~~~~-----------~--l~~ll~~~~~~LkpgG~li~sgi~~--~~~~~ 267 (288)
T TIGR00406 222 -------------------IEGKADVIVANILAE-----------V--IKELYPQFSRLVKPGGWLILSGILE--TQAQS 267 (288)
T ss_pred -------------------cCCCceEEEEecCHH-----------H--HHHHHHHHHHHcCCCcEEEEEeCcH--hHHHH
Confidence 125799999854211 1 1578999999999999999865433 23356
Q ss_pred HHHHHHHhcCc
Q 004354 688 VISRMKMVFNH 698 (759)
Q Consensus 688 v~~~l~~vF~~ 698 (759)
+.+.+++.|.-
T Consensus 268 v~~~~~~~f~~ 278 (288)
T TIGR00406 268 VCDAYEQGFTV 278 (288)
T ss_pred HHHHHHccCce
Confidence 67777766543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3e-06 Score=91.10 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=73.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
.+..|||+|||+|.++..-++.|.++|+++|.|.-+ +.+.+....+. .-++++.+.+++.. ...|+|++-..+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 567999999999999999999999999999999876 67766654432 23788888776654 8999999976555
Q ss_pred hH-HHHHHHHH----HHhcccCcEEE
Q 004354 143 KL-GNQYLSEV----KRLLKSGGKFV 163 (759)
Q Consensus 143 ~~-~~~~l~ei----~rvLkpGG~li 163 (759)
.. .+.+|..+ -+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 44 34444444 58999999876
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.9e-06 Score=84.57 Aligned_cols=110 Identities=13% Similarity=0.241 Sum_probs=88.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
-+++++|.||.=+|.-+......+| ..+|+++|+|+.-++++.+...+. -+..+++++++|.+-|.+.-.
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~-------- 143 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLA-------- 143 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHh--------
Confidence 4678999999999966555555555 459999999999999998776322 367899999999999998762
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+...||.+|+|.|.... ..+++.+-++|++||+++++-
T Consensus 144 -------------------~~~~~tfDfaFvDadK~nY-------------~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 144 -------------------DGESGTFDFAFVDADKDNY-------------SNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred -------------------cCCCCceeEEEEccchHHH-------------HHHHHHHHhhcccccEEEEec
Confidence 2235789999999987643 379999999999999998853
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.30 E-value=8e-06 Score=85.50 Aligned_cols=129 Identities=18% Similarity=0.261 Sum_probs=91.9
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeec
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~ 125 (759)
|+.-...+..++.. .|+.+|||.|.|+|.++..|+.. |. .+|+..|+.+..++.|++++...+ .++++.+.|+
T Consensus 25 YpkD~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 25 YPKDISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp -HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred eCchHHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 33344456666655 79999999999999999999875 32 369999999999999999886644 3689999999
Q ss_pred ccCC------CcccEEEeCCCChhHHHHHHHHHHHhc-ccCcEEEEEEcCchhhhhhhccccCCCc
Q 004354 126 TSMQ------GGLDALMEPELGHKLGNQYLSEVKRLL-KSGGKFVCLTLAESHVLGLLFPKFRFGW 184 (759)
Q Consensus 126 ~~~~------gtfD~Ii~~~~~~~~~~~~l~ei~rvL-kpGG~liiit~~~~~~~~~l~~~~~~~w 184 (759)
.+.. +.+|+|+..-..+| .++..+.++| ++||++++.+..-+.+.+.+......+|
T Consensus 102 ~~~g~~~~~~~~~DavfLDlp~Pw---~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFLDLPDPW---EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp GCG--STT-TTSEEEEEEESSSGG---GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred ecccccccccCcccEEEEeCCCHH---HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 6422 57999999765544 5678888999 8999999998776655544433333455
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-05 Score=77.68 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=88.0
Q ss_pred CCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCC---
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPEL--- 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~--- 140 (759)
...-+||||||+|..+..|+.. +...+.++|++|.+++..++.+..++.+++.++.|+...- ++.|+++.+..
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCc
Confidence 3567999999999999999876 3445899999999998877776666667888999876654 88999987540
Q ss_pred --------------------ChhHHHHHHHHHHHhcccCcEEEEEEcCch--hhhhhhccccCCCceEEEEE
Q 004354 141 --------------------GHKLGNQYLSEVKRLLKSGGKFVCLTLAES--HVLGLLFPKFRFGWKMSVHA 190 (759)
Q Consensus 141 --------------------~~~~~~~~l~ei~rvLkpGG~liiit~~~~--~~~~~l~~~~~~~w~v~~~~ 190 (759)
......+++..+-.+|.|.|.|+++..... +..-.+++ ..+|..++..
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~--~~g~~~~~~~ 192 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILE--KKGYGVRIAM 192 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHh--hcccceeEEE
Confidence 111267788888899999999999987643 22112222 2367666543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-06 Score=86.30 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=74.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.+|+|.|.++.+|.+. ..+|++||+++.+++.|++...-..-.+++++++|..++ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--~~------------- 92 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL--TF------------- 92 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC--Cc-------------
Confidence 3479999999999999999876 359999999999999999876322224588888886543 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE-EEec
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI-VNLV 678 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv-~N~~ 678 (759)
...||+|+. ...... .++. .-..+++.+++.|+|||.++ +...
T Consensus 93 -------------------~~~fD~I~~----~~~~~~--~~~~--~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 93 -------------------DGEYDFILS----TVVLMF--LEAK--TIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred -------------------CCCcCEEEE----ecchhh--CCHH--HHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 246999986 110000 0111 12679999999999999854 4443
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-05 Score=81.57 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=79.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.+|.|.|.++..+....|. .+++++|+++.+++.+++.+. ..++++++.+|..+.. .
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~--~------------ 102 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP--F------------ 102 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC--C------------
Confidence 5679999999999998888888775 699999999999999999987 3568999999976542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
....||+|++...- ..+ .. -..+++.+++.|+|||.+++-
T Consensus 103 -------------------~~~~~D~i~~~~~~----~~~----~~--~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 103 -------------------EDNSFDAVTIAFGL----RNV----TD--IQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred -------------------CCCcEEEEEEeeee----CCc----cc--HHHHHHHHHHHcCCCcEEEEE
Confidence 12579999872211 111 11 257999999999999988753
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.8e-06 Score=83.55 Aligned_cols=105 Identities=13% Similarity=0.170 Sum_probs=76.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.+|.|.|+++..+.... ..+|++||+|+..++.|++.+....-++++++.+|+.+++...
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~-------------- 118 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP-------------- 118 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc--------------
Confidence 3689999999999997533332 3599999999999999999863222247999999999887432
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHc--cCcCcEEEEEec
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDA--LSEQGLFIVNLV 678 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~--L~~~Gilv~N~~ 678 (759)
...||+|++|..- ... +..+.++.+... |.|+|++++-..
T Consensus 119 ------------------~~~fDlV~~DPPy----------~~g-~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 119 ------------------GTPHNVVFVDPPF----------RKG-LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ------------------CCCceEEEECCCC----------CCC-hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 1469999996420 011 235566766664 799999997753
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=85.44 Aligned_cols=126 Identities=17% Similarity=0.272 Sum_probs=91.0
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 610 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~ 610 (759)
.+||.+|+|.|.|...|....|..+|+.||+|..-++.||+..-...-++..|+.+|..+=
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~------------------- 220 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP------------------- 220 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-------------------
Confidence 4999999999999999999999999999999999999999998443223336676663321
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCc--EEEEEecCCChhHHHHH
Q 004354 611 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG--LFIVNLVSRSQATKDMV 688 (759)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~G--ilv~N~~~~~~~~~~~v 688 (759)
. ..+||+||.. .+-. .|.. -..-+..+++..++++|++|| .+|.| +... .
T Consensus 221 ---------------v-~~kfd~IisN--PPfh-~G~~--v~~~~~~~~i~~A~~~L~~gGeL~iVan---~~l~----y 272 (300)
T COG2813 221 ---------------V-EGKFDLIISN--PPFH-AGKA--VVHSLAQEIIAAAARHLKPGGELWIVAN---RHLP----Y 272 (300)
T ss_pred ---------------c-cccccEEEeC--CCcc-CCcc--hhHHHHHHHHHHHHHhhccCCEEEEEEc---CCCC----h
Confidence 1 2489999982 2211 1110 111234599999999999999 45556 3333 4
Q ss_pred HHHHHHhcCceEEEe
Q 004354 689 ISRMKMVFNHLFCLQ 703 (759)
Q Consensus 689 ~~~l~~vF~~v~~~~ 703 (759)
-..|.++|.++..+.
T Consensus 273 ~~~L~~~Fg~v~~la 287 (300)
T COG2813 273 EKKLKELFGNVEVLA 287 (300)
T ss_pred HHHHHHhcCCEEEEE
Confidence 567889999887765
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-06 Score=87.72 Aligned_cols=103 Identities=12% Similarity=0.148 Sum_probs=77.1
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
++||.||.|.|.++..+...+|..+++++|+++.+++.|++.+.- ..+++++++.+|..+. .
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~----~------------- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD----P------------- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC----C-------------
Confidence 379999999999998888888888999999999999999998721 1256899999885332 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
...+||+|+.- . +.+.... ...+|+.+++.|+|||.+++--
T Consensus 64 -----------------~~~~fD~I~~~----~----~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 64 -----------------FPDTYDLVFGF----E----VIHHIKD--KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred -----------------CCCCCCEeehH----H----HHHhCCC--HHHHHHHHHHHcCCCCEEEEEE
Confidence 01469999861 1 0000111 3689999999999999888654
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.8e-06 Score=84.77 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=74.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|.|.++.+|.... .++++||+++.+++.|++++.-..-.+++++.+|+.+.+.
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------------- 140 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-------------- 140 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC--------------
Confidence 345799999999999888887774 3899999999999999998732112348999999743211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
....||+|+++... ..+.+.+.+.|+|||.+++.+.
T Consensus 141 -------------------~~~~fD~I~~~~~~----------------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 -------------------AYAPFDRILVTAAA----------------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -------------------cCCCcCEEEEccCc----------------hhhhHHHHHhcCCCcEEEEEEc
Confidence 12579999996421 1223556789999999999875
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.27 E-value=4e-06 Score=84.95 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=65.3
Q ss_pred CCCeEEEECCCcchhHHH----HHHh---CCC---eEEEEeCCHHHHHHHHHHhc-------------------cC----
Q 004354 68 PPPQILVPGCGNSRLSEH----LYDA---GFH---GITNVDFSKVVISDMLRRNV-------------------RD---- 114 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~----L~~~---G~~---~VtgIDiS~~~I~~a~~r~~-------------------~~---- 114 (759)
...+|+-.||++|.-... |.+. ... +|+|+|+|+.+|+.|++-.- ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 567999999999984433 3331 111 59999999999999876310 00
Q ss_pred ------CCCcEEEEeeccc-CC--CcccEEEeCCCC----hhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 115 ------RSDMRWRVMDMTS-MQ--GGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 115 ------~~~i~f~~~D~~~-~~--gtfD~Ii~~~~~----~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
...+.|.+.|+.+ .+ +.||+|+|-+.. .....++++.+++.|+|||+|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 0358999999988 33 899999997743 3348999999999999999998764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.4e-06 Score=84.34 Aligned_cols=101 Identities=8% Similarity=-0.129 Sum_probs=74.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC------C-cccEEEeC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ------G-GLDALMEP 138 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~------g-tfD~Ii~~ 138 (759)
.+.++||++||+|.++..++.+|...|+++|.++.+++.+++++.... .+++++++|+.+.- + .||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 467999999999999999999998889999999999999888765433 35889999985531 2 37888876
Q ss_pred CCCh-hHHHHHHHHHH--HhcccCcEEEEEEcC
Q 004354 139 ELGH-KLGNQYLSEVK--RLLKSGGKFVCLTLA 168 (759)
Q Consensus 139 ~~~~-~~~~~~l~ei~--rvLkpGG~liiit~~ 168 (759)
+... ......+..+. .+|+++|.+++....
T Consensus 129 PPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 5322 22444444443 468888877766543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.3e-06 Score=86.22 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=78.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---------CcccE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---------GGLDA 134 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---------gtfD~ 134 (759)
...+||||||++|.-+.+|++.- -.+|+.+|+++...+.|++.+...+ .+++++.+|+.+.- ++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 46799999999999999999751 1369999999999999988775543 47999999987642 47999
Q ss_pred EEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 135 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 135 Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
|+.... ......++..+.++|+|||.+++-.
T Consensus 125 VFiDa~-K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDAD-KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEST-GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEccc-ccchhhHHHHHhhhccCCeEEEEcc
Confidence 999764 3346789999999999999988764
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.9e-06 Score=86.89 Aligned_cols=98 Identities=9% Similarity=-0.025 Sum_probs=79.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---------Cccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---------GGLD 133 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---------gtfD 133 (759)
.+..+|||+|||+|..+.+++.. + -..|+++|.++..++.|++.+++.+ .+++++.+|+.+.- ++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 45679999999999999999874 1 1259999999999999999886543 46999999986531 5899
Q ss_pred EEEeCCCChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 134 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 134 ~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
+|+.... ......+++.+.++|+|||.+++-
T Consensus 197 ~VFIDa~-K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDAD-KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECCC-HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 9999764 344788999999999999998764
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.3e-05 Score=83.62 Aligned_cols=141 Identities=20% Similarity=0.237 Sum_probs=92.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHH----HHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLT----MLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~----v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
...+||.||+|.|.++..+..... .-.|.+||+++. ++++|++. +++..+++|+..-. ...
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r------~NI~~I~~Da~~p~-~y~------- 197 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR------PNIVPIIEDARYPQ-KYR------- 197 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------CCCEEEECCccChh-hhh-------
Confidence 346899999999999999999874 348999999986 55666533 46889999976421 111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC--
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS-- 681 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~-- 681 (759)
.....+|+|++|+...|. ...++.+++..|+|+|.|++-+-.++
T Consensus 198 ----------------------~~~~~vDvV~~Dva~pdq------------~~il~~na~r~LKpGG~~vI~ika~~id 243 (293)
T PTZ00146 198 ----------------------MLVPMVDVIFADVAQPDQ------------ARIVALNAQYFLKNGGHFIISIKANCID 243 (293)
T ss_pred ----------------------cccCCCCEEEEeCCCcch------------HHHHHHHHHHhccCCCEEEEEEeccccc
Confidence 001469999999843221 13566789999999999988432221
Q ss_pred -----hhHHHHHHHHHHHh-cCceEEEeec--CCccEEEEEecC
Q 004354 682 -----QATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGLSS 717 (759)
Q Consensus 682 -----~~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~Vl~a~~~ 717 (759)
.+....-++.|++. |.-+-.+.++ +....++++...
T Consensus 244 ~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~ 287 (293)
T PTZ00146 244 STAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYR 287 (293)
T ss_pred cCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEc
Confidence 11122235778877 8865555443 233455555443
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-05 Score=90.85 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=97.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+|.|.|..+.++...++ ..+|+++|+++.+++.+++.+ |+ .+++++.+|+.++.....
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~~-------- 320 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRNLLELKP-------- 320 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhhcccccc--------
Confidence 446899999999999988888764 359999999999999999876 54 359999999887632110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCC-cCCCCC------------ChHHHHHHHHHccCcCc
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMT-CPAADF------------VEGSFLLTVKDALSEQG 671 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~s-cPp~~f------------~~~~fl~~~~~~L~~~G 671 (759)
.....||.|++|+..+. .+.+. .|-..+ +..++|..+.+.|+|||
T Consensus 321 ---------------------~~~~~fD~Vl~DaPCSg-~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG 378 (434)
T PRK14901 321 ---------------------QWRGYFDRILLDAPCSG-LGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGG 378 (434)
T ss_pred ---------------------cccccCCEEEEeCCCCc-ccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 01257999999986442 11111 111111 14688999999999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhcCc
Q 004354 672 LFIVNLVSRSQATKDMVISRMKMVFNH 698 (759)
Q Consensus 672 ilv~N~~~~~~~~~~~v~~~l~~vF~~ 698 (759)
.||+...+-..+..+.++..+.+-++.
T Consensus 379 ~lvystcsi~~~Ene~~v~~~l~~~~~ 405 (434)
T PRK14901 379 TLVYATCTLHPAENEAQIEQFLARHPD 405 (434)
T ss_pred EEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 999887666665556667666555554
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=82.01 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=90.2
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeecccCC---CcccEEEeCCC---
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ---GGLDALMEPEL--- 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~-~i~f~~~D~~~~~---gtfD~Ii~~~~--- 140 (759)
...+.||.|||.|+.+..++-.-|..|..+|..+..++.|++.+..... -.++.+.-+.++. ++||+|++...
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4578999999999999988766688999999999999999887654223 3578888887776 79999999652
Q ss_pred -ChhHHHHHHHHHHHhcccCcEEEEEEcCc-----------------hhhhhhhccccCCCceEEEEEeCCCCCCCCCce
Q 004354 141 -GHKLGNQYLSEVKRLLKSGGKFVCLTLAE-----------------SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQ 202 (759)
Q Consensus 141 -~~~~~~~~l~ei~rvLkpGG~liiit~~~-----------------~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~ 202 (759)
......++|+.+...|+|+|.+++=.-.. ......++.. .|+.+....... +-+..-+|
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~--AGl~~v~~~~Q~-~fP~~L~p 211 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQ--AGLRLVKEEKQK-GFPKELYP 211 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHH--CT-EEEEEEE-T-T--TTS-E
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHH--cCCEEEEecccc-CCCccceE
Confidence 23348999999999999999888753210 0122333333 366665544432 22355688
Q ss_pred EEEEEEE
Q 004354 203 TFMVVAD 209 (759)
Q Consensus 203 ~f~~v~~ 209 (759)
+++|+++
T Consensus 212 V~myaLr 218 (218)
T PF05891_consen 212 VRMYALR 218 (218)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 9998864
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-05 Score=84.27 Aligned_cols=111 Identities=13% Similarity=0.170 Sum_probs=76.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~-~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||.|.|.++..+.... ..+|++||+||.+++.|++.+.... ..++.+..+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-------------------- 176 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-------------------- 176 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------------------
Confidence 356799999999999998877653 3479999999999999999874311 122222111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHH
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 686 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~ 686 (759)
+.+||+|+.++... .-..++..+.+.|+|||.|++.-+... ...
T Consensus 177 ---------------------~~~fD~Vvani~~~-------------~~~~l~~~~~~~LkpgG~lilsgi~~~--~~~ 220 (250)
T PRK00517 177 ---------------------DLKADVIVANILAN-------------PLLELAPDLARLLKPGGRLILSGILEE--QAD 220 (250)
T ss_pred ---------------------CCCcCEEEEcCcHH-------------HHHHHHHHHHHhcCCCcEEEEEECcHh--hHH
Confidence 12699999854321 115688999999999999998643332 234
Q ss_pred HHHHHHHHh
Q 004354 687 MVISRMKMV 695 (759)
Q Consensus 687 ~v~~~l~~v 695 (759)
.+...+.+.
T Consensus 221 ~v~~~l~~~ 229 (250)
T PRK00517 221 EVLEAYEEA 229 (250)
T ss_pred HHHHHHHHC
Confidence 566666665
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.1e-06 Score=88.42 Aligned_cols=84 Identities=14% Similarity=0.210 Sum_probs=67.5
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~ 129 (759)
.+...+...+.. .++.+|||||||+|.++..+++.+. +|+++|+++.+++.+++++... ..+++++++|+.+..
T Consensus 23 ~i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 344445554443 5778999999999999999998864 5999999999999999887543 367999999998876
Q ss_pred -CcccEEEeCC
Q 004354 130 -GGLDALMEPE 139 (759)
Q Consensus 130 -gtfD~Ii~~~ 139 (759)
..||.|+++.
T Consensus 99 ~~~~d~VvaNl 109 (294)
T PTZ00338 99 FPYFDVCVANV 109 (294)
T ss_pred ccccCEEEecC
Confidence 7899999864
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.1e-06 Score=80.71 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=75.6
Q ss_pred ccccchhhhHHHHHHhhcC-CCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004354 45 EWYAEWPQLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~-~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~ 123 (759)
|-|...+.+...+...++. .+.-.+.+++|+|||.|.++....-.+.+.|.|+||.|++++.+.+++....-+++++++
T Consensus 24 EQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqc 103 (185)
T KOG3420|consen 24 EQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQC 103 (185)
T ss_pred hhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeee
Confidence 4566666666666555544 222467899999999999997666666778999999999999998887666678899999
Q ss_pred ecccCC---CcccEEEeCC
Q 004354 124 DMTSMQ---GGLDALMEPE 139 (759)
Q Consensus 124 D~~~~~---gtfD~Ii~~~ 139 (759)
|+.++. +.||.++.+.
T Consensus 104 dildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 104 DILDLELKGGIFDTAVINP 122 (185)
T ss_pred eccchhccCCeEeeEEecC
Confidence 999887 8999999875
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.2e-05 Score=83.45 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=61.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCc-EEEEeecccCC--------CcccEEEeC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQ--------GGLDALMEP 138 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i-~f~~~D~~~~~--------gtfD~Ii~~ 138 (759)
.+..|||+|||+|.++..+++.|...|+|+|+++.++....+. .+++ .+...|+.... ..+|+++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~----~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS 150 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ----DERVKVLERTNIRYVTPADIFPDFATFDVSFIS 150 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc----CCCeeEeecCCcccCCHhHcCCCceeeeEEEee
Confidence 5668999999999999999999988899999999888652222 1222 23333443222 467766664
Q ss_pred CCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 139 ELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 139 ~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
...++..+.++|+| |.+++..
T Consensus 151 ------~~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 151 ------LISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ------hHhHHHHHHHHhCc-CeEEEEc
Confidence 23468899999999 7766543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-05 Score=88.20 Aligned_cols=100 Identities=21% Similarity=0.182 Sum_probs=74.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||+||.|.|.++..+.+..+. ..|++||++|.+++.|++.+.-..-+++.++.+|+.+.+..
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~------------- 146 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE------------- 146 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-------------
Confidence 4479999999999999988887753 47999999999999999876221124699999998765322
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
...||+|+++... .+....+.+.|+|||.+++.+
T Consensus 147 --------------------~~~fD~Ii~~~g~----------------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 --------------------FAPYDVIFVTVGV----------------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred --------------------cCCccEEEECCch----------------HHhHHHHHHhcCCCCEEEEEe
Confidence 1459999996321 112334567899999988765
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-05 Score=69.40 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=77.2
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccc
Q 004354 532 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 611 (759)
Q Consensus 532 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~ 611 (759)
+++.+|.|.|.+...+.. .+..++.++|+++..++.+++........+++++.+|..++... .
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------- 63 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-A--------------- 63 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-c---------------
Confidence 479999999998887777 46679999999999999998433222356899999998887541 1
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 612 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+||+|+.+..-... .-....+++.+.+.|+++|.+++-
T Consensus 64 ----------------~~~~d~i~~~~~~~~~---------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 ----------------DESFDVIISDPPLHHL---------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ----------------CCceEEEEEccceeeh---------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2579999995422110 123478899999999999998864
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=93.96 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=81.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|+|.+...|...+|..+++++|+++.|++.|++.... ...+++++.+|+.++-....
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-~g~~ie~I~gDa~dLp~~fe------------ 484 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-EGRSWNVIKGDAINLSSSFE------------ 484 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-cCCCeEEEEcchHhCccccC------------
Confidence 45799999999999988888888999999999999999999987532 23468889999877421121
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcC-----CCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDV-----DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~-----~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
+..||+|+.-. .+--+..+...++. .-..+|+.+.+.|+|||.+++.-
T Consensus 485 -------------------deSFDvVVsn~vLH~L~syIp~~g~~f~~e--dl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 485 -------------------KESVDTIVYSSILHELFSYIEYEGKKFNHE--VIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred -------------------CCCEEEEEEchHHHhhhhhcccccccccHH--HHHHHHHHHHHHcCCCcEEEEEe
Confidence 35799998621 10000000000000 12679999999999999998863
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=88.35 Aligned_cols=99 Identities=15% Similarity=0.228 Sum_probs=79.1
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccCC----CcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQ----GGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~~----gtfD~Ii~ 137 (759)
...+||.||+|.|..+.++++. +..+|+.+|+++.+++.+++.+.. ..++++++.+|....- ++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4568999999999999998875 456899999999999999887632 2478999999987764 78999998
Q ss_pred CCCCh-------hH-HHHHHH-HHHHhcccCcEEEEEE
Q 004354 138 PELGH-------KL-GNQYLS-EVKRLLKSGGKFVCLT 166 (759)
Q Consensus 138 ~~~~~-------~~-~~~~l~-ei~rvLkpGG~liiit 166 (759)
..... .. -..+++ .+.+.|+|||.+++-.
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 63211 11 456787 8999999999987653
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.2e-05 Score=78.52 Aligned_cols=141 Identities=14% Similarity=0.195 Sum_probs=95.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
+.-.++|.+|.|.|.|+..|.... .+++++|+++..++.|++..+ .-+++++++.|-.++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~--------------- 102 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFW--------------- 102 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT-----------------
T ss_pred cccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCC---------------
Confidence 445789999999999999998774 599999999999999999985 2478999999865552
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh-----HHHHHHHHHccCcCcEEEEEecCC--
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-----GSFLLTVKDALSEQGLFIVNLVSR-- 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~-----~~fl~~~~~~L~~~Gilv~N~~~~-- 680 (759)
...+||+|++ ++ -..|++ ..++..+...|.|||.||+--+..
T Consensus 103 -------------------P~~~FDLIV~----SE--------VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~ 151 (201)
T PF05401_consen 103 -------------------PEGRFDLIVL----SE--------VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDAN 151 (201)
T ss_dssp --------------------SS-EEEEEE----ES---------GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred -------------------CCCCeeEEEE----eh--------HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc
Confidence 1368999998 32 122332 247888999999999999855321
Q ss_pred -----ChhHHHHHHHHHHHhcCceEEEeecC---CccEEEEEecCC
Q 004354 681 -----SQATKDMVISRMKMVFNHLFCLQLEE---DVNLVLFGLSSE 718 (759)
Q Consensus 681 -----~~~~~~~v~~~l~~vF~~v~~~~~~~---~~N~Vl~a~~~~ 718 (759)
+..-.+.++..|++.|..|-.+.+.. +.+-+|..+.++
T Consensus 152 c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 152 CRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLLARFRNP 197 (201)
T ss_dssp HHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEEEE--
T ss_pred ccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEeeeecCC
Confidence 12224678888999998887777543 244566666554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-05 Score=85.04 Aligned_cols=142 Identities=18% Similarity=0.228 Sum_probs=94.2
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 532 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 532 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
+||.||.|+|+++..|....|..+|+++||+|..+++|++.. |+ .++.++.+| +.....
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~d---lf~~~~------------ 174 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---VRVLVVQSD---LFEPLR------------ 174 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeee---cccccC------------
Confidence 899999999999999999999999999999999999999886 44 445555554 444432
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCC-CC--CC------CcCCCCC--------ChHHHHHHHHHccCcCc
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS-SS--GM------TCPAADF--------VEGSFLLTVKDALSEQG 671 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~-~~--g~------scPp~~f--------~~~~fl~~~~~~L~~~G 671 (759)
++||+|+... +-- .. .+ .-|...+ +-..|+..+.+.|+|+|
T Consensus 175 --------------------~~fDlIVsNP--PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g 232 (280)
T COG2890 175 --------------------GKFDLIVSNP--PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGG 232 (280)
T ss_pred --------------------CceeEEEeCC--CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCc
Confidence 4799999722 100 00 00 0010011 24678889999999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhc--CceEEEeecCCccEEEEEec
Q 004354 672 LFIVNLVSRSQATKDMVISRMKMVF--NHLFCLQLEEDVNLVLFGLS 716 (759)
Q Consensus 672 ilv~N~~~~~~~~~~~v~~~l~~vF--~~v~~~~~~~~~N~Vl~a~~ 716 (759)
++++-.-.... +.+.+.+.+.. ..+...+-..+.+.++.+..
T Consensus 233 ~l~le~g~~q~---~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 233 VLILEIGLTQG---EAVKALFEDTGFFEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred EEEEEECCCcH---HHHHHHHHhcCCceEEEEEecCCCceEEEEEEe
Confidence 99987743332 33444554444 34455554455666666654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=85.38 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=91.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....++|.||+|.|++..++.+.+ +++|++|.++++..+.|++.+ |+ ..+++|...|=.++
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~------------- 134 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDF------------- 134 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEecccccc-------------
Confidence 566899999999999999999998 789999999999999999977 76 36899999986655
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEE-cCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCCh-
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ- 682 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~-D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~- 682 (759)
.++||-|+. .++.- .+ + =.-+.|++.+++.|+|||.+++..+....
T Consensus 135 -----------------------~e~fDrIvSvgmfEh--vg-----~--~~~~~ff~~~~~~L~~~G~~llh~I~~~~~ 182 (283)
T COG2230 135 -----------------------EEPFDRIVSVGMFEH--VG-----K--ENYDDFFKKVYALLKPGGRMLLHSITGPDQ 182 (283)
T ss_pred -----------------------ccccceeeehhhHHH--hC-----c--ccHHHHHHHHHhhcCCCceEEEEEecCCCc
Confidence 245999985 22111 00 0 01378999999999999999887766543
Q ss_pred hHHHHHHHHHHHhcCc
Q 004354 683 ATKDMVISRMKMVFNH 698 (759)
Q Consensus 683 ~~~~~v~~~l~~vF~~ 698 (759)
......--..+-+||.
T Consensus 183 ~~~~~~~~i~~yiFPg 198 (283)
T COG2230 183 EFRRFPDFIDKYIFPG 198 (283)
T ss_pred ccccchHHHHHhCCCC
Confidence 2212223334567775
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=87.81 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=76.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||.|+|.+...+...++..++++||+++.+++.|++.+. .++++++.+|+.+. .
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~l----p------------ 173 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDL----P------------ 173 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhC----C------------
Confidence 3468999999999988888887777899999999999999999875 35688999997653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
.....||+|+.-. ...-. | -....|+.+.+.|+|||.+++
T Consensus 174 -----------------~~~~sFDvVIs~~----~L~~~--~----d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 174 -----------------FPTDYADRYVSAG----SIEYW--P----DPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred -----------------CCCCceeEEEEcC----hhhhC--C----CHHHHHHHHHHhcCCCcEEEE
Confidence 1135799998721 10000 1 125689999999999998876
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.7e-05 Score=77.63 Aligned_cols=115 Identities=14% Similarity=0.198 Sum_probs=77.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~--~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
+..+||.+|.|.|.++..+... ..+++++|++|.+++.|++.+... .+.++.++.+|..+.+ .
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~---------- 87 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF---R---------- 87 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc---c----------
Confidence 4468999999999999888877 469999999999999998887331 1222888888864421 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCC--C--------CCCcC-CCCCChHHHHHHHHHccCcCcEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--S--------GMTCP-AADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~--~--------g~scP-p~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
..+||+|+.+.--.... . ...+. .....-..+++.+.+.|+|+|.+++
T Consensus 88 ---------------------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 88 ---------------------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred ---------------------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 23799999843100000 0 00000 0011235689999999999999888
Q ss_pred EecC
Q 004354 676 NLVS 679 (759)
Q Consensus 676 N~~~ 679 (759)
.+.+
T Consensus 147 ~~~~ 150 (188)
T PRK14968 147 LQSS 150 (188)
T ss_pred EEcc
Confidence 7644
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=85.69 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=75.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||+||.|+|.....+...+ +..+|++||+++.+++.|++.+.-..-++++++.+|..+. .
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l----~---------- 141 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL----P---------- 141 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC----C----------
Confidence 455799999999998776666654 4558999999999999999875211124789999986432 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+..||+|+...--. . .+ -...+++.+.+.|+|||.|++-
T Consensus 142 -------------------~~~~~fD~Vi~~~v~~-----~--~~---d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 142 -------------------VADNSVDVIISNCVIN-----L--SP---DKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred -------------------CCCCceeEEEEcCccc-----C--CC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 1135799999743110 0 01 1257899999999999988873
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2e-05 Score=81.33 Aligned_cols=105 Identities=15% Similarity=0.111 Sum_probs=78.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.+|.|+|.++..+...+ |..+++++|+++.+++.|++.... ..++++++.+|....- .
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~--~----------- 83 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLP--F----------- 83 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCC--C-----------
Confidence 455799999999999988888877 677999999999999999988322 2457899988864421 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
....||+|+...--. .+. -...+++.+.+.|+|||.+++-
T Consensus 84 --------------------~~~~~D~v~~~~~~~----~~~------~~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 84 --------------------PDGSFDAVRSDRVLQ----HLE------DPARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred --------------------CCCCceEEEEechhh----ccC------CHHHHHHHHHHHhcCCcEEEEE
Confidence 135799999843111 111 1267999999999999988764
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.6e-06 Score=82.66 Aligned_cols=127 Identities=18% Similarity=0.269 Sum_probs=85.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeE----EEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK----VHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~----v~i~Da~~~l~~~~~~~~~~~ 603 (759)
-.+..+|.||+-.|.|+..++..|....|.+||||+..++.|+++..+..+.... ..++++..|..=.. ...
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~-~~~--- 132 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ-RNE--- 132 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc-ccc---
Confidence 4678899999999999999999998889999999999999999998665332222 22334333321111 000
Q ss_pred cccccccccccCCCCCCCCC-C--------------CCCCCceeEEEE-------cCCCCCCCCCCCcCCCCCChHHHHH
Q 004354 604 MSVVHGNEITSNNTRSCNGN-C--------------TASNARVDILII-------DVDSPDSSSGMTCPAADFVEGSFLL 661 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~yD~Ii~-------D~~s~d~~~g~scPp~~f~~~~fl~ 661 (759)
..++.+.+.++. . .....+||+|+. -++-+| .|| ..|++
T Consensus 133 --------a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD--~GL---------~~ff~ 193 (288)
T KOG2899|consen 133 --------ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGD--DGL---------RRFFR 193 (288)
T ss_pred --------ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEeccccc--HHH---------HHHHH
Confidence 111111111111 0 124678999984 555555 355 88999
Q ss_pred HHHHccCcCcEEEEEe
Q 004354 662 TVKDALSEQGLFIVNL 677 (759)
Q Consensus 662 ~~~~~L~~~Gilv~N~ 677 (759)
++.++|.|||+||+-=
T Consensus 194 kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 194 KISSLLHPGGILVVEP 209 (288)
T ss_pred HHHHhhCcCcEEEEcC
Confidence 9999999999999653
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.8e-05 Score=82.85 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=75.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCChh--
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHK-- 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~~-- 143 (759)
.+..+|||||+|+|.++..+++... -+++..|. |.+++.+++ ..+++++.+|+.+....+|+++.....|.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFDPLPVADVYLLRHVLHDWS 172 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTTCCSSESEEEEESSGGGS-
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHHhhhccccceeeehhhhhcc
Confidence 4556899999999999999998732 25999998 778888776 57899999999843344999998765543
Q ss_pred --HHHHHHHHHHHhcccC--cEEEEEEcC
Q 004354 144 --LGNQYLSEVKRLLKSG--GKFVCLTLA 168 (759)
Q Consensus 144 --~~~~~l~ei~rvLkpG--G~liiit~~ 168 (759)
....+|+++++.|+|| |+++++..-
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 3889999999999999 999998753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=81.39 Aligned_cols=131 Identities=16% Similarity=0.184 Sum_probs=96.9
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 610 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~ 610 (759)
+-+|.||.|.|-....+....|+..+.+||+....+..|.+......-++++++.+||..++...-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~-------------- 84 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF-------------- 84 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS--------------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc--------------
Confidence 378999999999999999999999999999999999988877622234789999999999998865
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHHH
Q 004354 611 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVIS 690 (759)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 690 (759)
.+...|-|.+=- +||..--.-.-..+++++||..+.++|+|||.|- +.+....+.+.+++
T Consensus 85 ----------------~~~~v~~i~i~F--PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~--~~TD~~~y~~~~~~ 144 (195)
T PF02390_consen 85 ----------------PPGSVDRIYINF--PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELY--FATDVEEYAEWMLE 144 (195)
T ss_dssp ----------------TTTSEEEEEEES-------SGGGGGGSTTSHHHHHHHHHHEEEEEEEE--EEES-HHHHHHHHH
T ss_pred ----------------cCCchheEEEeC--CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEE--EEeCCHHHHHHHHH
Confidence 136789998833 3432111111245899999999999999999875 55677787777777
Q ss_pred HHHHh
Q 004354 691 RMKMV 695 (759)
Q Consensus 691 ~l~~v 695 (759)
.+...
T Consensus 145 ~~~~~ 149 (195)
T PF02390_consen 145 QFEES 149 (195)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77774
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.5e-05 Score=80.15 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=84.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+.+|..||+|.|..+..|++.+|...|+++|-+|+|++.|++.. +.+++..+|...|-.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p-------------- 89 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKP-------------- 89 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCC--------------
Confidence 5678999999999999999999999999999999999999998875 468999999988821
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
....|+|+..+ ....+ |. ..+.|..+-..|.|||+|++.+...
T Consensus 90 --------------------~~~~dllfaNA----vlqWl---pd---H~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 90 --------------------EQPTDLLFANA----VLQWL---PD---HPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred --------------------CCccchhhhhh----hhhhc---cc---cHHHHHHHHHhhCCCceEEEECCCc
Confidence 25688887632 11111 11 3678999999999999999998654
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.8e-05 Score=79.07 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=85.3
Q ss_pred hhcccCCCCeEEEEcccccHHHHHHHHhCCC------CcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHH
Q 004354 523 SVASVGKSVKAVVIGLGAGLLPMFLHECMPF------VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVR 593 (759)
Q Consensus 523 ~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~------~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~ 593 (759)
++..++...++|.+++|+|-++--+.++.+. .+|+++||+|.|+.++++.- ++.++.++.++.+||.+.-
T Consensus 94 ~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp- 172 (296)
T KOG1540|consen 94 SKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP- 172 (296)
T ss_pred hccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-
Confidence 3335566789999999999887666666655 69999999999999999887 8888889999999988751
Q ss_pred hhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEE
Q 004354 594 EMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 673 (759)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gil 673 (759)
. .+..||+..+ .-.... |+. -...|+.+.+.|+|||.|
T Consensus 173 -F-------------------------------dd~s~D~yTi----afGIRN--~th----~~k~l~EAYRVLKpGGrf 210 (296)
T KOG1540|consen 173 -F-------------------------------DDDSFDAYTI----AFGIRN--VTH----IQKALREAYRVLKPGGRF 210 (296)
T ss_pred -C-------------------------------CCCcceeEEE----ecceec--CCC----HHHHHHHHHHhcCCCcEE
Confidence 1 2467888877 211111 221 167899999999999988
Q ss_pred EEEe
Q 004354 674 IVNL 677 (759)
Q Consensus 674 v~N~ 677 (759)
.+=-
T Consensus 211 ~cLe 214 (296)
T KOG1540|consen 211 SCLE 214 (296)
T ss_pred EEEE
Confidence 7433
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.9e-05 Score=82.99 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=75.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|+|.++..|... ..+++++|++|.+++.|++.+. ...++.+|+... .
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~----~------------ 98 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL----P------------ 98 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC----c------------
Confidence 4578999999999998888764 4699999999999999998753 246778886442 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
..+..||+|+.... .... + --..+|..+.+.|+|||.|++..+..
T Consensus 99 -----------------~~~~~fD~V~s~~~----l~~~--~----d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 99 -----------------LATATFDLAWSNLA----VQWC--G----NLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred -----------------CCCCcEEEEEECch----hhhc--C----CHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 11357999997321 0001 1 12679999999999999999887554
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.8e-05 Score=81.06 Aligned_cols=111 Identities=17% Similarity=0.087 Sum_probs=84.4
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEE-eecc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDR--SDMRWRV-MDMT 126 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~--~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~-~D~~ 126 (759)
..-.++..++.. .+..+|||||.+.|.-+.+|+..-. .++|.||++++..+.|++++.+.+ ..+..+. +|..
T Consensus 46 e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 46 ETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred hHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 334444444444 5678999999999999999987622 369999999999999999886543 3477777 4654
Q ss_pred cCC-----CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 127 SMQ-----GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 127 ~~~-----gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+.- ++||+|+.... ......+|+.+.++|+|||.+++--
T Consensus 123 ~~l~~~~~~~fDliFIDad-K~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDAD-KADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred HHHHhccCCCccEEEEeCC-hhhCHHHHHHHHHHhCCCcEEEEee
Confidence 432 89999999653 2336789999999999999988764
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.2e-05 Score=78.01 Aligned_cols=139 Identities=16% Similarity=0.264 Sum_probs=78.9
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeec
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~ 125 (759)
|-.. ..+.+++++... ++...|-|+|||.+.++..+. .+++ |...|.-. .+-.++.+|+
T Consensus 55 WP~n---Pvd~iI~~l~~~--~~~~viaD~GCGdA~la~~~~-~~~~-V~SfDLva--------------~n~~Vtacdi 113 (219)
T PF05148_consen 55 WPVN---PVDVIIEWLKKR--PKSLVIADFGCGDAKLAKAVP-NKHK-VHSFDLVA--------------PNPRVTACDI 113 (219)
T ss_dssp SSS----HHHHHHHHHCTS---TTS-EEEES-TT-HHHHH---S----EEEEESS---------------SSTTEEES-T
T ss_pred CCCC---cHHHHHHHHHhc--CCCEEEEECCCchHHHHHhcc-cCce-EEEeeccC--------------CCCCEEEecC
Confidence 6554 345566777641 345789999999999997653 3454 99999755 1124678999
Q ss_pred ccCC---CcccEEEeC-CCChhHHHHHHHHHHHhcccCcEEEEEEcCchh-hhhhhcccc-CCCceEEEEEeCCCCCCCC
Q 004354 126 TSMQ---GGLDALMEP-ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH-VLGLLFPKF-RFGWKMSVHAIPQKSSSEP 199 (759)
Q Consensus 126 ~~~~---gtfD~Ii~~-~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~-~~~~l~~~~-~~~w~v~~~~~~~~~~~~~ 199 (759)
.+.| ++.|++++. ...-.....++.|+.|+|||||.+.+......- -...+.... ..||.+......+
T Consensus 114 a~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n------ 187 (219)
T PF05148_consen 114 ANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESN------ 187 (219)
T ss_dssp TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--S------
T ss_pred ccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCC------
Confidence 9988 899988864 333445889999999999999999999864320 112222222 3377766543222
Q ss_pred CceEEEEEEEeCC
Q 004354 200 SLQTFMVVADKEN 212 (759)
Q Consensus 200 ~~~~f~~v~~K~~ 212 (759)
-..+++.++|..
T Consensus 188 -~~F~~f~F~K~~ 199 (219)
T PF05148_consen 188 -KHFVLFEFKKIR 199 (219)
T ss_dssp -TTEEEEEEEE-S
T ss_pred -CeEEEEEEEEcC
Confidence 234445556654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.1e-05 Score=81.37 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=79.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
...+||.||+|.|.++..+....| ..+++++|+++.+++.|++.+.-. ..+++.++.+|..+.. .
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~----------- 117 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--F----------- 117 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--C-----------
Confidence 347999999999999999988887 679999999999999999998431 2467899999875531 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
....||+|++...-. .+ + --..+|+.+.+.|+|||.+++.
T Consensus 118 --------------------~~~~~D~I~~~~~l~----~~---~---~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 118 --------------------PDNSFDAVTIAFGLR----NV---P---DIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred --------------------CCCCccEEEEecccc----cC---C---CHHHHHHHHHHhccCCcEEEEE
Confidence 135799998732111 11 1 1267999999999999987764
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.1e-05 Score=78.78 Aligned_cols=104 Identities=25% Similarity=0.343 Sum_probs=73.8
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC--C--------eEEEEeCCHHHHHHHHHHhccCC--CCcE
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--H--------GITNVDFSKVVISDMLRRNVRDR--SDMR 119 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~--~--------~VtgIDiS~~~I~~a~~r~~~~~--~~i~ 119 (759)
.+...+..+... .++..|||.-||+|.+..+.+..+. . .++|.|+++.+++.+++++...+ ..+.
T Consensus 15 ~lA~~ll~la~~---~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 15 TLAAALLNLAGW---RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp HHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred HHHHHHHHHhCC---CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 455555555544 5678999999999999987765432 2 27899999999999999875543 3478
Q ss_pred EEEeecccCC---CcccEEEeCCC-----C-----hhHHHHHHHHHHHhccc
Q 004354 120 WRVMDMTSMQ---GGLDALMEPEL-----G-----HKLGNQYLSEVKRLLKS 158 (759)
Q Consensus 120 f~~~D~~~~~---gtfD~Ii~~~~-----~-----~~~~~~~l~ei~rvLkp 158 (759)
+.+.|+++++ +++|+|+++.. . ......+++++.++|++
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999988 78999999751 1 12267888999999999
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.7e-05 Score=83.12 Aligned_cols=96 Identities=17% Similarity=0.194 Sum_probs=81.3
Q ss_pred CeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccC-----CCCcEEEEeecccCC----CcccEEEeCC
Q 004354 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSMQ----GGLDALMEPE 139 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~-----~~~i~f~~~D~~~~~----gtfD~Ii~~~ 139 (759)
.+||.||-|.|..+..+.+.. .++++.+||.+.+++.+++.+... .++++.+..|..++- .+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 599999999999999999875 578999999999999999876432 378999999987765 6899999965
Q ss_pred CChhH------HHHHHHHHHHhcccCcEEEEE
Q 004354 140 LGHKL------GNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 140 ~~~~~------~~~~l~ei~rvLkpGG~liii 165 (759)
....- -..+++.+++.|+++|.++.-
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 33311 588999999999999999988
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.5e-05 Score=82.57 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=72.5
Q ss_pred CCCeEEEECCCcchhHHHH----HHh-CC----CeEEEEeCCHHHHHHHHHHhcc-------------------------
Q 004354 68 PPPQILVPGCGNSRLSEHL----YDA-GF----HGITNVDFSKVVISDMLRRNVR------------------------- 113 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L----~~~-G~----~~VtgIDiS~~~I~~a~~r~~~------------------------- 113 (759)
...+|+-.||+||.-...| .+. +. -+|+|+|||+.+|+.|++-.-.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 3479999999999854333 332 11 1599999999999998774210
Q ss_pred -------CCCCcEEEEeecccCC----CcccEEEeCCCC----hhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 114 -------DRSDMRWRVMDMTSMQ----GGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 114 -------~~~~i~f~~~D~~~~~----gtfD~Ii~~~~~----~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
-...++|.+.|+.+.+ +.||+|+|.+.. .....++++.+++.|+|||++++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0134789999988743 789999996632 3348999999999999999766543
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.9e-05 Score=84.52 Aligned_cols=116 Identities=13% Similarity=0.135 Sum_probs=78.3
Q ss_pred CeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-------------------
Q 004354 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ------------------- 129 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~------------------- 129 (759)
.+|||++||+|.++..+++. +..|+|+|+|+.+++.+++++...+ .+++|+++|+.+.-
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999988765 5679999999999999988875433 47899999987631
Q ss_pred CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEe
Q 004354 130 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 191 (759)
Q Consensus 130 gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~ 191 (759)
..||+|+..+.-......+++.+.+ |+ .++.++..+....+.+.... .+|.+.....
T Consensus 287 ~~~D~v~lDPPR~G~~~~~l~~l~~---~~-~ivyvSC~p~tlarDl~~L~-~gY~l~~v~~ 343 (362)
T PRK05031 287 YNFSTIFVDPPRAGLDDETLKLVQA---YE-RILYISCNPETLCENLETLS-QTHKVERFAL 343 (362)
T ss_pred CCCCEEEECCCCCCCcHHHHHHHHc---cC-CEEEEEeCHHHHHHHHHHHc-CCcEEEEEEE
Confidence 1489999976422224555555544 44 46666665543333232221 2666555443
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.7e-05 Score=82.01 Aligned_cols=127 Identities=14% Similarity=0.147 Sum_probs=82.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.+|.|.|.++..+... +..++++||+++.+++.|++.+... ..++.++.+|..+++.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~-~~~~~~~~~d~~~~~~---------------- 98 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLA-GVDVDVRRGDWARAVE---------------- 98 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHh-CCeeEEEECchhhhcc----------------
Confidence 468999999999998888765 4459999999999999999876321 2258899998765421
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCC-CCCCCCCCC--cCCCCC--------ChHHHHHHHHHccCcCcEEEEEec
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVD-SPDSSSGMT--CPAADF--------VEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~-s~d~~~g~s--cPp~~f--------~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
...||+|+.+.- ......+.. -|...+ .-..+++.+.+.|++||.+++-..
T Consensus 99 ------------------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 99 ------------------FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ------------------CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 257999999741 111000000 000000 125688899999999999886443
Q ss_pred CCChhHHHHHHHHHHH
Q 004354 679 SRSQATKDMVISRMKM 694 (759)
Q Consensus 679 ~~~~~~~~~v~~~l~~ 694 (759)
... ....++..+++
T Consensus 161 ~~~--~~~~~~~~l~~ 174 (223)
T PRK14967 161 ELS--GVERTLTRLSE 174 (223)
T ss_pred ccc--CHHHHHHHHHH
Confidence 222 12234555543
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-05 Score=91.30 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=71.7
Q ss_pred CCeEEEECCCcchhHHHHHHhC-----CCeEEEEeCCHHHHHHHHHHhc--cCCCCcEEEEeecccCC--CcccEEEeCC
Q 004354 69 PPQILVPGCGNSRLSEHLYDAG-----FHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDMTSMQ--GGLDALMEPE 139 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G-----~~~VtgIDiS~~~I~~a~~r~~--~~~~~i~f~~~D~~~~~--gtfD~Ii~~~ 139 (759)
+..|||||||+|-++...++.| ..+|++|+-|+.++...+++.. .....|+++++|+++.. ...|+|++--
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 4679999999999998877765 3579999999998877666532 23467999999999998 7899999832
Q ss_pred ----CChhHHHHHHHHHHHhcccCcEEE
Q 004354 140 ----LGHKLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 140 ----~~~~~~~~~l~ei~rvLkpGG~li 163 (759)
...+.....+....|.|||||.+|
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 223345667889999999999876
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.4e-05 Score=84.87 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=76.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....++|.||+|.|.++..+.+.+|..+++++|+ |.+++.|+++. |+ .+|++++.+|+.+. ..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl--~~rv~~~~~d~~~~--~~--------- 213 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV--ADRMRGIAVDIYKE--SY--------- 213 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc--cceEEEEecCccCC--CC---------
Confidence 4557999999999999999999999999999998 89999999875 44 57899999996542 11
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+|+|++-- .+..-+.. ....+|+++.+.|+|||.|++-
T Consensus 214 ------------------------~~~D~v~~~~-------~lh~~~~~-~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 214 ------------------------PEADAVLFCR-------ILYSANEQ-LSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred ------------------------CCCCEEEeEh-------hhhcCChH-HHHHHHHHHHHhcCCCCEEEEE
Confidence 2368887611 01000000 1145899999999999988654
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.05 E-value=2e-05 Score=79.98 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=70.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.+|.|.|.++.+|... ..+|++||++|.+++.|++...-. +-++++...|...+ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~--~~------------- 91 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARE-NLPLRTDAYDINAA--AL------------- 91 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHh-CCCceeEeccchhc--cc-------------
Confidence 4579999999999999999875 359999999999999998776211 11266666664322 01
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+||+|+.-. ....+ ++. .-..+++.+++.|+|||.+++.
T Consensus 92 -------------------~~~fD~I~~~~----~~~~~--~~~--~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 -------------------NEDYDFIFSTV----VFMFL--QAG--RVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred -------------------cCCCCEEEEec----ccccC--CHH--HHHHHHHHHHHHhCCCcEEEEE
Confidence 14699998611 00000 111 1257999999999999985443
|
Part of a tellurite-reducing operon tehA and tehB |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.4e-05 Score=76.28 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=74.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...++|.||.|.|.++..+... ..++++||+|+.+++.+++.+.- .++++++.+|+.++.. .
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~--~------------ 74 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDL--P------------ 74 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCc--c------------
Confidence 4468999999999999998887 46999999999999999999853 5689999999987621 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHc--cCcCcEEEEEe
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDA--LSEQGLFIVNL 677 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~--L~~~Gilv~N~ 677 (759)
+..||.|+.++ |-+.. .+.+..+.+. +.++|+|++..
T Consensus 75 -------------------~~~~d~vi~n~------------Py~~~-~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 75 -------------------KLQPYKVVGNL------------PYNIS-TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred -------------------ccCCCEEEECC------------CcccH-HHHHHHHHhcCCCcceEEEEEEH
Confidence 23589998742 44433 4555555543 34788998875
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.1e-05 Score=83.45 Aligned_cols=116 Identities=11% Similarity=0.100 Sum_probs=78.6
Q ss_pred CeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-------------------
Q 004354 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ------------------- 129 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~------------------- 129 (759)
.+|||+|||+|.++..|++. +..|+|+|+++.+++.+++++...+ .+++|+++|+.+..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 47999999999999988766 5679999999999999998875443 46899999986532
Q ss_pred CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEe
Q 004354 130 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 191 (759)
Q Consensus 130 gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~ 191 (759)
..||+|+..+.-......+++.+.+ | +.++.++..+..+.+.+-... .+|.+.-...
T Consensus 278 ~~~d~v~lDPPR~G~~~~~l~~l~~---~-~~ivYvsC~p~tlaRDl~~L~-~~Y~l~~v~~ 334 (353)
T TIGR02143 278 YNCSTIFVDPPRAGLDPDTCKLVQA---Y-ERILYISCNPETLKANLEQLS-ETHRVERFAL 334 (353)
T ss_pred CCCCEEEECCCCCCCcHHHHHHHHc---C-CcEEEEEcCHHHHHHHHHHHh-cCcEEEEEEE
Confidence 1279999976422224455555544 5 456666666554444433222 2355554443
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.3e-05 Score=78.09 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=80.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|.|.+...+... ..+++++|+++.+++.|++.+... ..++.++..|..++....
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~------------ 111 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALES-GLKIDYRQTTAEELAAEH------------ 111 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHc-CCceEEEecCHHHhhhhc------------
Confidence 34578999999999988888765 358999999999999999887432 235788888887765332
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
..+||+|++.-. ...+ + -...+|+.+.+.|+|||.+++....+.
T Consensus 112 --------------------~~~fD~Ii~~~~----l~~~---~---~~~~~l~~~~~~L~~gG~l~v~~~~~~ 155 (233)
T PRK05134 112 --------------------PGQFDVVTCMEM----LEHV---P---DPASFVRACAKLVKPGGLVFFSTLNRN 155 (233)
T ss_pred --------------------CCCccEEEEhhH----hhcc---C---CHHHHHHHHHHHcCCCcEEEEEecCCC
Confidence 257999998321 1111 1 125789999999999999998876543
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.5e-05 Score=79.20 Aligned_cols=129 Identities=17% Similarity=0.243 Sum_probs=86.6
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---Ccc
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGL 132 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtf 132 (759)
.+++.+.. .+.+..|.|+|||.+.++. .-...|+..|+-+ .+-+++.+||.+.| ++.
T Consensus 170 ~ii~~ik~--r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a--------------~~~~V~~cDm~~vPl~d~sv 229 (325)
T KOG3045|consen 170 VIIRKIKR--RPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA--------------VNERVIACDMRNVPLEDESV 229 (325)
T ss_pred HHHHHHHh--CcCceEEEecccchhhhhh----ccccceeeeeeec--------------CCCceeeccccCCcCccCcc
Confidence 34444443 1456789999999999886 2234599999644 23467889999988 899
Q ss_pred cEEEeC-CCChhHHHHHHHHHHHhcccCcEEEEEEcCch--hhhhhhcccc-CCCceEEEEEeCCCCCCCCCceEEEEEE
Q 004354 133 DALMEP-ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES--HVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVA 208 (759)
Q Consensus 133 D~Ii~~-~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~--~~~~~l~~~~-~~~w~v~~~~~~~~~~~~~~~~~f~~v~ 208 (759)
|++++. ...-..+..++.+++|+|++||.+.+...... .+. .+.... ..||.+....+.+ -..++|.+
T Consensus 230 DvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~-~f~r~l~~lGF~~~~~d~~n-------~~F~lfef 301 (325)
T KOG3045|consen 230 DVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVK-GFVRALTKLGFDVKHKDVSN-------KYFTLFEF 301 (325)
T ss_pred cEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHH-HHHHHHHHcCCeeeehhhhc-------ceEEEEEE
Confidence 987754 34444588999999999999999999876432 222 233322 3477776655544 23555666
Q ss_pred EeCC
Q 004354 209 DKEN 212 (759)
Q Consensus 209 ~K~~ 212 (759)
.|..
T Consensus 302 kK~~ 305 (325)
T KOG3045|consen 302 KKTP 305 (325)
T ss_pred ecCC
Confidence 6643
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.7e-05 Score=80.70 Aligned_cols=98 Identities=13% Similarity=-0.010 Sum_probs=79.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC----------Ccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ----------GGL 132 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~----------gtf 132 (759)
....+|||||+++|.-+.+|+.. + -.+|+.+|+++...+.|++.+.+.+ .+++++.+|+.+.- ++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 35679999999999999999865 1 1269999999999999988876543 67999999886641 489
Q ss_pred cEEEeCCCChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 133 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 133 D~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
|+|+.... ......+++.+.++|+|||.+++-
T Consensus 158 D~iFiDad-K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVDAD-KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEecCC-HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 99999764 344678899999999999997763
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.5e-05 Score=82.06 Aligned_cols=132 Identities=14% Similarity=0.233 Sum_probs=86.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.+|.|+|.|++..... ...+|.+||+||..++.|+++..+. -.+++.++.. .
T Consensus 161 ~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~---------~----------- 219 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS---------E----------- 219 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT---------S-----------
T ss_pred CCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe---------c-----------
Confidence 4469999999999999988887 3448999999999999999998332 1336655310 0
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
+....+||+|+..+...- -.+.+..+.++|+|||.|++-=+-. ...+.
T Consensus 220 -----------------~~~~~~~dlvvANI~~~v-------------L~~l~~~~~~~l~~~G~lIlSGIl~--~~~~~ 267 (295)
T PF06325_consen 220 -----------------DLVEGKFDLVVANILADV-------------LLELAPDIASLLKPGGYLILSGILE--EQEDE 267 (295)
T ss_dssp -----------------CTCCS-EEEEEEES-HHH-------------HHHHHHHCHHHEEEEEEEEEEEEEG--GGHHH
T ss_pred -----------------ccccccCCEEEECCCHHH-------------HHHHHHHHHHhhCCCCEEEEccccH--HHHHH
Confidence 011378999998664431 1456677788899999999764333 33356
Q ss_pred HHHHHHHhcCceEEEeecCCccEEEEEec
Q 004354 688 VISRMKMVFNHLFCLQLEEDVNLVLFGLS 716 (759)
Q Consensus 688 v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~ 716 (759)
+.+.+++-| .........+++.+..+
T Consensus 268 v~~a~~~g~---~~~~~~~~~~W~~l~~~ 293 (295)
T PF06325_consen 268 VIEAYKQGF---ELVEEREEGEWVALVFK 293 (295)
T ss_dssp HHHHHHTTE---EEEEEEEETTEEEEEEE
T ss_pred HHHHHHCCC---EEEEEEEECCEEEEEEE
Confidence 777776522 23333345566655543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00016 Score=82.70 Aligned_cols=134 Identities=13% Similarity=0.189 Sum_probs=102.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.++.|-|+-+..|...+.+ ..|+++|+++.-++..++.+ |+ .++.+...|+..+-....
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~~------- 181 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAALP------- 181 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhch-------
Confidence 34568999999999999999988854 48999999999999988765 65 458999999987643322
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--------------ChHHHHHHHHHccCc
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 669 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--------------~~~~fl~~~~~~L~~ 669 (759)
..||.|++|+-.+. .||-.-.+.. +..++|..+.+.|+|
T Consensus 182 -------------------------~~fD~ILvDaPCSG--~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp 234 (470)
T PRK11933 182 -------------------------ETFDAILLDAPCSG--EGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP 234 (470)
T ss_pred -------------------------hhcCeEEEcCCCCC--CcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56999999996653 2332222211 247889999999999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhcCc
Q 004354 670 QGLFIVNLVSRSQATKDMVISRMKMVFNH 698 (759)
Q Consensus 670 ~Gilv~N~~~~~~~~~~~v~~~l~~vF~~ 698 (759)
||+||.-..+-..+.-+.+++.+.+-++.
T Consensus 235 GG~LVYSTCT~~~eENE~vV~~~L~~~~~ 263 (470)
T PRK11933 235 GGTLVYSTCTLNREENQAVCLWLKETYPD 263 (470)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHCCC
Confidence 99999888777777777888877666664
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=7e-05 Score=83.82 Aligned_cols=105 Identities=17% Similarity=0.292 Sum_probs=76.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++.++...+ ..+|++||+++.+++.|++... +..+++..+|..+. .
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~---~l~v~~~~~D~~~l----~----------- 226 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA---GLPVEIRLQDYRDL----N----------- 226 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc---cCeEEEEECchhhc----C-----------
Confidence 345699999999999999998875 4599999999999999998762 22478888885432 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
..||+|+. +..-.. + +.. .-..+++.+.+.|+|||.+++-.+..
T Consensus 227 ---------------------~~fD~Ivs-~~~~eh---v--g~~--~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 227 ---------------------GQFDRIVS-VGMFEH---V--GPK--NYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred ---------------------CCCCEEEE-eCchhh---C--ChH--HHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 46999975 100000 0 000 11579999999999999999876544
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.3e-05 Score=79.95 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=72.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+|+.||+|.|.++..+...+|+++++++|+ |.|++.|++ .+|++++-+|-. ....
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f---~~~P----------- 157 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF---DPLP----------- 157 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT---TCCS-----------
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH---hhhc-----------
Confidence 4567899999999999999999999999999999 999999999 689999999854 3322
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcC--cEEEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ--GLFIVN 676 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~--Gilv~N 676 (759)
. +|+|++ ..-.... |+. -....|++++..|+|| |.|+|.
T Consensus 158 ---------------------~-~D~~~l----~~vLh~~--~d~--~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 158 ---------------------V-ADVYLL----RHVLHDW--SDE--DCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp ---------------------S-ESEEEE----ESSGGGS---HH--HHHHHHHHHHHHSEECTTEEEEEE
T ss_pred ---------------------c-ccceee----ehhhhhc--chH--HHHHHHHHHHHHhCCCCCCeEEEE
Confidence 3 999998 2100000 000 1256899999999998 866554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00011 Score=79.97 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=74.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHh----C-CCeEEEEeCCHHHHHHHHHHhc-cCCCCcEE--EEeecccCC---------
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVISDMLRRNV-RDRSDMRW--RVMDMTSMQ--------- 129 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~----G-~~~VtgIDiS~~~I~~a~~r~~-~~~~~i~f--~~~D~~~~~--------- 129 (759)
.++..|+|+|||+|+-+..|++. + ...++++|+|..+++.+.+++. ...|.+++ +++|.++.-
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 35668999999999987776653 1 2359999999999999999887 56677766 788886531
Q ss_pred CcccEEEeCC-----CChhHHHHHHHHHHH-hcccCcEEEEE
Q 004354 130 GGLDALMEPE-----LGHKLGNQYLSEVKR-LLKSGGKFVCL 165 (759)
Q Consensus 130 gtfD~Ii~~~-----~~~~~~~~~l~ei~r-vLkpGG~liii 165 (759)
....+++... ..+.....+|+++++ .|+|||.|++-
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 2356666532 234458899999999 99999987764
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.7e-05 Score=82.05 Aligned_cols=94 Identities=13% Similarity=0.249 Sum_probs=71.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC---CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPF---VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~---~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||.|+|.++..|...+|. ..+++||+++.+++.|++.+ +++.++++|+.+. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~l----p--------- 146 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRL----P--------- 146 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccC----C---------
Confidence 4468999999999999888877764 37999999999999998875 3588899986542 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+..||+|+. +++ +.+++.+++.|+|||.|++-.
T Consensus 147 --------------------~~~~sfD~I~~-~~~----------------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 147 --------------------FADQSLDAIIR-IYA----------------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred --------------------CcCCceeEEEE-ecC----------------CCCHHHHHhhccCCCEEEEEe
Confidence 11367999985 111 124577899999999998754
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.2e-05 Score=79.14 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=48.1
Q ss_pred CCeEEEEcccccHHHHHHHHhC---CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 530 SVKAVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~---p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
..+||.+|.|+|.++..+.+.+ +..+|++||||+.++++|++.+ +++.++.+|...+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~ 109 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTT 109 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcc
Confidence 5699999999999999888764 3469999999999999999774 3588999997653
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00011 Score=75.99 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=94.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
.+-+|.||.|.|.....++...|+..+.+||+-..++..|-+...-..-++++++..||.+++.....
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~------------ 116 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIP------------ 116 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCC------------
Confidence 36799999999999999999999999999999999999988887322223899999999999998761
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
++..|-|.+-- +||..-.---=..++.++|++.+.+.|+|||.|-+- +....+.+.
T Consensus 117 ------------------~~sl~~I~i~F--PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a--TD~~~y~e~ 172 (227)
T COG0220 117 ------------------DGSLDKIYINF--PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA--TDNEEYFEW 172 (227)
T ss_pred ------------------CCCeeEEEEEC--CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE--ecCHHHHHH
Confidence 34788888833 343211100013489999999999999999998843 455665544
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.8e-05 Score=91.59 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=85.6
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC---C-------------CCCCeEEEEccHHHHHH
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF---T-------------QDKSLKVHITDGIKFVR 593 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl---~-------------~~~rl~v~i~Da~~~l~ 593 (759)
..+||.||.|.|+++..|...+|..+|++||++|.++++|++.... . ..+|++++.+|..+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 3589999999999999999998888999999999999999888632 1 12589999999887653
Q ss_pred hhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCC---CCCCCCCCC------c---------CCCCCC
Q 004354 594 EMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD---SPDSSSGMT------C---------PAADFV 655 (759)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~---s~d~~~g~s------c---------Pp~~f~ 655 (759)
.. ..+||+|+.-.- .++. ..|+ - |...+.
T Consensus 199 ~~--------------------------------~~~fDlIVSNPPYI~~~e~-~~l~~eV~~~ep~~~~~~~~p~~AL~ 245 (1082)
T PLN02672 199 DN--------------------------------NIELDRIVGCIPQILNPNP-EAMSKLVTENASEEFLYSLSNYCALQ 245 (1082)
T ss_pred cc--------------------------------CCceEEEEECCCcCCCcch-hhcChhhhhccccccccccCcccccc
Confidence 21 136999986321 0000 0110 0 112222
Q ss_pred h-----------HHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 656 E-----------GSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 656 ~-----------~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
. ..++..+.+.|+|||.+++++-.+..+
T Consensus 246 g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~ 284 (1082)
T PLN02672 246 GFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQ 284 (1082)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHH
Confidence 2 567788888999999999999655443
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.3e-05 Score=79.53 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=78.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.+|.|.|.++..+....+..+|++||++|.+++.|++.+ ++++++.+|+.++..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~---------------- 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES---------------- 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc----------------
Confidence 46899999999999888877766679999999999999999864 368999999988742
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCC-CCCC---CCCCCcC------CCCCC-hHHHHHHHHHccCcCcEEEEEec
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVD-SPDS---SSGMTCP------AADFV-EGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~-s~d~---~~g~scP------p~~f~-~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
..+||+||.+.- .... ...+ .+ .-..+ -..|+..+...|.|+|.+.+-..
T Consensus 124 ------------------~~kFDlIIsNPPF~~l~~~d~~~~-~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 124 ------------------NEKFDVVISNPPFGKINTTDTKDV-FEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS 184 (279)
T ss_pred ------------------cCCCcEEEEcCCccccCchhhhhh-hhhccCccccccccHHHHHhhhHheecCCceEEEEEe
Confidence 146999998541 1100 0000 00 00112 26789999999999997766554
Q ss_pred C
Q 004354 679 S 679 (759)
Q Consensus 679 ~ 679 (759)
+
T Consensus 185 s 185 (279)
T PHA03411 185 G 185 (279)
T ss_pred c
Confidence 3
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.6e-05 Score=77.08 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=78.1
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhcc-CCCCc-EEEEeecccC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVR-DRSDM-RWRVMDMTSM 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~-~~~~i-~f~~~D~~~~ 128 (759)
-+...+.+++.. .+.+|||||||||..+.+++..-. -...-.|..+..+....+.... ..+++ .-+..|++..
T Consensus 13 pIl~vL~~~l~~----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 13 PILEVLKQYLPD----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP 88 (204)
T ss_pred HHHHHHHHHhCc----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence 455677777753 233699999999999999998722 1366778888776544443322 22332 3456777665
Q ss_pred C-----------CcccEEEeCCCChh----HHHHHHHHHHHhcccCcEEEEEE
Q 004354 129 Q-----------GGLDALMEPELGHK----LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 129 ~-----------gtfD~Ii~~~~~~~----~~~~~l~ei~rvLkpGG~liiit 166 (759)
. +.||+|+|.+..|- ..+.+|+.+.++|++||.|++..
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 3 38999999875442 28999999999999999988753
|
The function of this family is unknown. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=2e-05 Score=83.78 Aligned_cols=45 Identities=36% Similarity=0.476 Sum_probs=38.3
Q ss_pred CCCCeEEEEccccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHhh
Q 004354 528 GKSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 572 (759)
Q Consensus 528 ~~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiDp~v~~vA~~~ 572 (759)
+.+.+|+.+|+|+| ++++.|.+.++ ..+|+++|+|+.+++.|++-
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 45679999999999 47788887765 46899999999999999974
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.8e-06 Score=84.94 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=71.6
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCC----CeEEEEccHHHHHHhhcccCccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDK----SLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~--~~~----rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+||.+|+|||.|..-|.+.- ..|++||+.+.++++|+++-.+. .+. |++..+.|+-.
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~-------------- 154 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG-------------- 154 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh--------------
Confidence 679999999999999888873 79999999999999999994331 111 23333332211
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
...+||+|++ .+...-+--| .+|+..+.++|+|+|.+++-.+.|
T Consensus 155 ----------------------~~~~fDaVvc----sevleHV~dp------~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 155 ----------------------LTGKFDAVVC----SEVLEHVKDP------QEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred ----------------------cccccceeee----HHHHHHHhCH------HHHHHHHHHHhCCCCceEeeehhh
Confidence 1356999997 2210000001 789999999999999998876655
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00013 Score=73.68 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=78.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
..++|.++.|+|++...+..... ..|++||+|+..++++++.+... ..++++++.+|+.+++.....
T Consensus 50 g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~----------- 117 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK----------- 117 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-----------
Confidence 46899999999999988887743 48999999999999999887221 135799999999999865431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHH--ccCcCcEEEEEec
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD--ALSEQGLFIVNLV 678 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~--~L~~~Gilv~N~~ 678 (759)
....||+|++|..=. .-...+.++.+.+ .|+++|++|+--.
T Consensus 118 ------------------~~~~~dvv~~DPPy~-----------~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 118 ------------------KPTFDNVIYLDPPFF-----------NGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred ------------------cCCCceEEEECcCCC-----------CCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 113589999964221 1123455555544 6899999997653
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.8e-05 Score=77.78 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=83.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
+.+.+||.||+|+|.+...|...+|..++++||+++.+++.|++++ ++++++.+|+.+. .
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~---~------------ 101 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDP---F------------ 101 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCC---C------------
Confidence 4557899999999999999998888889999999999999999875 2477888886541 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC------
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS------ 681 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~------ 681 (759)
.+.+||+|+.. ....-+ +|.. -..+++.+.+.++ +-+++.....+.
T Consensus 102 -------------------~~~sfD~V~~~----~vL~hl--~p~~--~~~~l~el~r~~~-~~v~i~e~~~~~~~~~~y 153 (204)
T TIGR03587 102 -------------------KDNFFDLVLTK----GVLIHI--NPDN--LPTAYRELYRCSN-RYILIAEYYNPSPVEISY 153 (204)
T ss_pred -------------------CCCCEEEEEEC----ChhhhC--CHHH--HHHHHHHHHhhcC-cEEEEEEeeCCCceeeee
Confidence 13679999971 111011 1211 1457777777763 345555543321
Q ss_pred -----hhHHHHHHHHHHHhcCceEE
Q 004354 682 -----QATKDMVISRMKMVFNHLFC 701 (759)
Q Consensus 682 -----~~~~~~v~~~l~~vF~~v~~ 701 (759)
.-.++.....+-+.|+.+-.
T Consensus 154 ~~~~~~~~~~d~~~~~~~~~~~l~~ 178 (204)
T TIGR03587 154 RGNSGRLWKRDFAGEMMDRYPDLKL 178 (204)
T ss_pred eCCcchhhhhhHHHHHHHhCCccee
Confidence 11234455667777886433
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.2e-05 Score=77.48 Aligned_cols=108 Identities=12% Similarity=0.135 Sum_probs=79.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||.|.|.+...+.... .+++++|+++.+++.|++.+.-....++++..+|+.++....
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~------------- 109 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG------------- 109 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-------------
Confidence 46799999999999888777653 469999999999999999875322226888999987774321
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
..+||+|++.-.- .... -...+|+.+.+.|++||.+++....+
T Consensus 110 -------------------~~~~D~i~~~~~l----~~~~------~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 110 -------------------AKSFDVVTCMEVL----EHVP------DPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred -------------------CCCccEEEehhHH----HhCC------CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 2579999973110 0011 12579999999999999988766543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.7e-05 Score=76.26 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=81.4
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC--CeEEEEeCCHHHHHHHHHHhccC-----------CCC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF--HGITNVDFSKVVISDMLRRNVRD-----------RSD 117 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~--~~VtgIDiS~~~I~~a~~r~~~~-----------~~~ 117 (759)
.+...+.+++.. ...|+.+.||+|.|+|.++..++.. |. .+.+|||.-+..++..++++.+. ..+
T Consensus 67 ~mha~~le~L~~-~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 67 HMHATALEYLDD-HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHHH-hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 344444455441 0157899999999999999888754 32 34599999999999998887543 246
Q ss_pred cEEEEeecccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 118 MRWRVMDMTSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 118 i~f~~~D~~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+.++++|..... ..||+|.|.... ....+++...|++||++++--
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa----~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAA----SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCc----cccHHHHHHhhccCCeEEEee
Confidence 788999988766 899999998654 345566677899999988764
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.7e-05 Score=79.09 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=72.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeEEEEccHHHHHHhhc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~------------~~~rl~v~i~Da~~~l~~~~ 596 (759)
...+||++|+|.|--+.+|..+ ...|++||++|..++.|.+.-|+. ...+++++++|..++-...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~- 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD- 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc-
Confidence 3469999999999999999876 459999999999999875554442 2357888899876652110
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 597 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
...||.|+- ... +.+-|+. .-..+++.+.++|+|||.++
T Consensus 111 -------------------------------~~~fD~i~D-~~~------~~~l~~~-~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 111 -------------------------------LGPVDAVYD-RAA------LIALPEE-MRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred -------------------------------CCCcCEEEe-chh------hccCCHH-HHHHHHHHHHHHcCCCCeEE
Confidence 146888753 111 1111222 23569999999999999533
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00013 Score=77.97 Aligned_cols=164 Identities=13% Similarity=0.150 Sum_probs=102.2
Q ss_pred cceeecCCc-cchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHh
Q 004354 493 NQLKVYHGY-LASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 571 (759)
Q Consensus 493 ~~~~~d~~~-L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~ 571 (759)
..+++||+. ...-+|-.-...+-++.... ..+.+||.+|+|.|.|+...... ...++.++|+||.-+++|++
T Consensus 131 ~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~------~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~e 203 (300)
T COG2264 131 LNIELDPGLAFGTGTHPTTSLCLEALEKLL------KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARE 203 (300)
T ss_pred eEEEEccccccCCCCChhHHHHHHHHHHhh------cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHH
Confidence 457788873 33444533222232322221 36789999999999999877776 34589999999999999999
Q ss_pred hcCCCCCC-CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcC
Q 004354 572 YFGFTQDK-SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP 650 (759)
Q Consensus 572 ~Fgl~~~~-rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scP 650 (759)
..-+..-+ ..++-..+..+. ....+||+|+..+-.. +
T Consensus 204 Na~~N~v~~~~~~~~~~~~~~----------------------------------~~~~~~DvIVANILA~-v------- 241 (300)
T COG2264 204 NARLNGVELLVQAKGFLLLEV----------------------------------PENGPFDVIVANILAE-V------- 241 (300)
T ss_pred HHHHcCCchhhhcccccchhh----------------------------------cccCcccEEEehhhHH-H-------
Confidence 98542111 111111111111 1236899999866332 1
Q ss_pred CCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHHHHH-HHhcCceEEEeecCCccEEEEEe
Q 004354 651 AADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRM-KMVFNHLFCLQLEEDVNLVLFGL 715 (759)
Q Consensus 651 p~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l-~~vF~~v~~~~~~~~~N~Vl~a~ 715 (759)
-..+...++++|+|||.+++-=+-.+. .++|.+.+ ++-|..+-... ...++.+..
T Consensus 242 -----l~~La~~~~~~lkpgg~lIlSGIl~~q--~~~V~~a~~~~gf~v~~~~~---~~eW~~i~~ 297 (300)
T COG2264 242 -----LVELAPDIKRLLKPGGRLILSGILEDQ--AESVAEAYEQAGFEVVEVLE---REEWVAIVG 297 (300)
T ss_pred -----HHHHHHHHHHHcCCCceEEEEeehHhH--HHHHHHHHHhCCCeEeEEEe---cCCEEEEEE
Confidence 147888999999999999976543333 46777777 44666554443 234555544
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.91 E-value=2e-05 Score=79.21 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=75.7
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-------CcccEEEeC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-------GGLDALMEP 138 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-------gtfD~Ii~~ 138 (759)
.+.++||+-||+|.++.+.+.+|.+.|+.||.++.+++.+++++.... ..+..++.|+...- ..||+|+..
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 578999999999999999999999999999999999999988875433 24788888854332 689999997
Q ss_pred CCChh-H-HHHHHHHHH--HhcccCcEEEEEEcCc
Q 004354 139 ELGHK-L-GNQYLSEVK--RLLKSGGKFVCLTLAE 169 (759)
Q Consensus 139 ~~~~~-~-~~~~l~ei~--rvLkpGG~liiit~~~ 169 (759)
+.... . ...++..+. .+|+++|.+++-+...
T Consensus 122 PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 122 PPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 64332 2 377777776 7999999988877543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.7e-05 Score=87.45 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhC----CCCcEEEEEcCHHHHHHHHhh---cCCCC
Q 004354 505 SYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECM----PFVGIEAVELDLTMLNLAEDY---FGFTQ 577 (759)
Q Consensus 505 ~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~----p~~~i~~VEiDp~v~~vA~~~---Fgl~~ 577 (759)
.|.+||..++.=.. .......+...||+||.|.|.|.++..++. ...+|.+||.+|..+...++. =|+
T Consensus 165 ~Ye~AI~~al~D~~---~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-- 239 (448)
T PF05185_consen 165 QYERAIEEALKDRV---RKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-- 239 (448)
T ss_dssp HHHHHHHHHHHHHH---TTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHhhh---hhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC--
Confidence 47777765543211 110000134679999999999998877664 346999999999766655433 244
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChH
Q 004354 578 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 657 (759)
Q Consensus 578 ~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~ 657 (759)
+++++|+.+|.+++ +. ..++|+||.-+-.+-. -.+ +.+
T Consensus 240 ~~~V~vi~~d~r~v--~l--------------------------------pekvDIIVSElLGsfg-------~nE-l~p 277 (448)
T PF05185_consen 240 GDKVTVIHGDMREV--EL--------------------------------PEKVDIIVSELLGSFG-------DNE-LSP 277 (448)
T ss_dssp TTTEEEEES-TTTS--CH--------------------------------SS-EEEEEE---BTTB-------TTT-SHH
T ss_pred CCeEEEEeCcccCC--CC--------------------------------CCceeEEEEeccCCcc-------ccc-cCH
Confidence 67899999998776 11 2589999987654321 122 447
Q ss_pred HHHHHHHHccCcCcEEE
Q 004354 658 SFLLTVKDALSEQGLFI 674 (759)
Q Consensus 658 ~fl~~~~~~L~~~Gilv 674 (759)
|.|..+.+.|+|+|+++
T Consensus 278 E~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 278 ECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHGGGGEEEEEEEE
T ss_pred HHHHHHHhhcCCCCEEe
Confidence 88999999999999988
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.8e-05 Score=82.47 Aligned_cols=116 Identities=14% Similarity=0.116 Sum_probs=83.7
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCC-cEEEEEcCHHHHHHHHhhcCCC--CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~-~i~~VEiDp~v~~vA~~~Fgl~--~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
.++||-+=.=+|+.+.+.... ++ +++.||++...++.|++++.+. ..++.+++++|+.+|+++...
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~--------- 286 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER--------- 286 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh---------
Confidence 579999999999887555544 44 9999999999999999999553 356799999999999999762
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
.+.+||+||+|.-+=.-+..+. ....=--...+..+.++|+|||++++-.
T Consensus 287 --------------------~g~~fDlIilDPPsF~r~k~~~-~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 287 --------------------RGEKFDLIILDPPSFARSKKQE-FSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred --------------------cCCcccEEEECCcccccCcccc-hhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 3568999999863321111110 0000002356677889999999888644
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.4e-05 Score=83.01 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=72.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
+.+||.||+|.|.++.+|... ..+|++||+++.+++.|++...-. .-++++...|....- .
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~-~l~v~~~~~D~~~~~--~-------------- 181 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE-NLNIRTGLYDINSAS--I-------------- 181 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc-CCceEEEEechhccc--c--------------
Confidence 459999999999999998875 469999999999999998876321 125788888754320 0
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
..+||+|+.-. .. +..++. .-..+++.+.+.|+|||++++
T Consensus 182 ------------------~~~fD~I~~~~----vl--~~l~~~--~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 182 ------------------QEEYDFILSTV----VL--MFLNRE--RIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ------------------cCCccEEEEcc----hh--hhCCHH--HHHHHHHHHHHhcCCCcEEEE
Confidence 25799998721 00 000111 125789999999999998654
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.4e-05 Score=81.19 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=77.7
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccCC----C-cccEEE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQ----G-GLDALM 136 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~~----g-tfD~Ii 136 (759)
...+||-||-|.|..+..+.+.. ..+|+.+|+++.+++.+++.+.. ..++++++..|....- . +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57899999999999999998764 56899999999999999876532 3578999999986654 5 899999
Q ss_pred eCCCCh-----hH-HHHHHHHHHHhcccCcEEEEEE
Q 004354 137 EPELGH-----KL-GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 137 ~~~~~~-----~~-~~~~l~ei~rvLkpGG~liiit 166 (759)
...... .. -..+++.+++.|+|||.+++-.
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 844221 11 5789999999999999999875
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.6e-05 Score=82.22 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=54.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC-C--CCcEEEE-eecccC-------CCcccEE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD-R--SDMRWRV-MDMTSM-------QGGLDAL 135 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~-~--~~i~f~~-~D~~~~-------~gtfD~I 135 (759)
...++||||||+|.+...|+..-+ .+++|+|+++.+++.|++++... . ..+++.+ .|..+. .+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999988877765422 36999999999999999887554 2 3466653 332221 1589999
Q ss_pred EeCCCCh
Q 004354 136 MEPELGH 142 (759)
Q Consensus 136 i~~~~~~ 142 (759)
+|+...+
T Consensus 194 vcNPPf~ 200 (321)
T PRK11727 194 LCNPPFH 200 (321)
T ss_pred EeCCCCc
Confidence 9987443
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00021 Score=77.44 Aligned_cols=113 Identities=10% Similarity=0.105 Sum_probs=74.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
...+||.+|+|+|..+..|...++ ..++++||++++|++.|++.+.-. +.-++..+.+|..+.+.-...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~--------- 133 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPE--------- 133 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcc---------
Confidence 446899999999999988888876 579999999999999999886311 123466689997664332210
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
.......+++.+. . ...+ ++.. ...||+.+++.|+|||.|++.+
T Consensus 134 -------------------~~~~~~~~~~~gs--~--~~~~--~~~e--~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 134 -------------------PAAGRRLGFFPGS--T--IGNF--TPEE--AVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred -------------------cccCCeEEEEecc--c--ccCC--CHHH--HHHHHHHHHHhcCCCCEEEEec
Confidence 0011233444421 1 1111 1111 2469999999999999998655
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.1e-05 Score=80.34 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=72.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
.+..|||+|||+|.++...+..|.++|++++.|+ |.+.|++..+.+ ..++..+.+-+++.. ...|+|++......
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 5678999999999999999999999999999887 666777765433 246788888887776 89999999664322
Q ss_pred -----HHHHHHHHHHHhcccCcEEE
Q 004354 144 -----LGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 144 -----~~~~~l~ei~rvLkpGG~li 163 (759)
+.+.++ ..+|.|+|.|.++
T Consensus 256 L~NERMLEsYl-~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 256 LVNERMLESYL-HARKWLKPNGKMF 279 (517)
T ss_pred hhhHHHHHHHH-HHHhhcCCCCccc
Confidence 244444 3569999999865
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.5e-05 Score=83.00 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=79.8
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 610 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~ 610 (759)
.+||.++.|.|.++..+....+...|+++|+||..++.+++...+..-+.++++.+|+.+++.. .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~-------------- 123 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-E-------------- 123 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-c--------------
Confidence 5899999999999988877666568999999999999999988443234577999999998754 2
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 611 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
.+||+|++|.+.. | .+|+..+...++++|++.+-
T Consensus 124 ------------------~~fD~V~lDP~Gs--------~------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 124 ------------------RKFDVVDIDPFGS--------P------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------------------CCCCEEEECCCCC--------c------HHHHHHHHHHhcCCCEEEEE
Confidence 4599999987521 1 57888888889999999866
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00052 Score=73.48 Aligned_cols=125 Identities=17% Similarity=0.221 Sum_probs=85.0
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CC
Q 004354 501 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QD 578 (759)
Q Consensus 501 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~--~~ 578 (759)
||...-.+.++...+ ..++||.+=.=+|+...+.... .-.+++.||++...++.|++.+.+. ..
T Consensus 108 FlDqR~nR~~v~~~~-------------~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~ 173 (286)
T PF10672_consen 108 FLDQRENRKWVRKYA-------------KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDL 173 (286)
T ss_dssp -GGGHHHHHHHHHHC-------------TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CC
T ss_pred cHHHHhhHHHHHHHc-------------CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 455666677665532 3479999999999888765543 3348999999999999999998432 24
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-Ch-
Q 004354 579 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VE- 656 (759)
Q Consensus 579 ~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-~~- 656 (759)
++++++.+|+.+|+++... ..+||+||+|.-+-.. ..| +.
T Consensus 174 ~~~~~~~~Dvf~~l~~~~~------------------------------~~~fD~IIlDPPsF~k--------~~~~~~~ 215 (286)
T PF10672_consen 174 DRHRFIQGDVFKFLKRLKK------------------------------GGRFDLIILDPPSFAK--------SKFDLER 215 (286)
T ss_dssp TCEEEEES-HHHHHHHHHH------------------------------TT-EEEEEE--SSEES--------STCEHHH
T ss_pred cceEEEecCHHHHHHHHhc------------------------------CCCCCEEEECCCCCCC--------CHHHHHH
Confidence 6899999999999987642 3589999998643211 111 12
Q ss_pred --HHHHHHHHHccCcCcEEEEEe
Q 004354 657 --GSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 657 --~~fl~~~~~~L~~~Gilv~N~ 677 (759)
.+.+..+.++|+|||+|++-.
T Consensus 216 ~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 216 DYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEc
Confidence 346777888999999887544
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=5e-05 Score=75.86 Aligned_cols=125 Identities=15% Similarity=0.176 Sum_probs=85.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeE-EEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK-VHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~-v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
.....+|.||.|+|..-.|.-.. |..+|+.+|-+|.|-++|.+-+.=...+.+. ++++||.+.. +.+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~-~l~---------- 142 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP-QLA---------- 142 (252)
T ss_pred cCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc-ccc----------
Confidence 34567899999999876555433 7789999999999999999988433344555 8999988753 222
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcC--CCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhH
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDV--DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 684 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~--~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~ 684 (759)
+.+||+|+.-+ .|-.. | ...|.+++++|+|||.+++-= .-...
T Consensus 143 ---------------------d~s~DtVV~TlvLCSve~------~------~k~L~e~~rlLRpgG~iifiE--Hva~~ 187 (252)
T KOG4300|consen 143 ---------------------DGSYDTVVCTLVLCSVED------P------VKQLNEVRRLLRPGGRIIFIE--HVAGE 187 (252)
T ss_pred ---------------------cCCeeeEEEEEEEeccCC------H------HHHHHHHHHhcCCCcEEEEEe--ccccc
Confidence 47899999633 22111 1 679999999999999877532 22222
Q ss_pred HHHHHHHHHHhcCce
Q 004354 685 KDMVISRMKMVFNHL 699 (759)
Q Consensus 685 ~~~v~~~l~~vF~~v 699 (759)
......-+++++..+
T Consensus 188 y~~~n~i~q~v~ep~ 202 (252)
T KOG4300|consen 188 YGFWNRILQQVAEPL 202 (252)
T ss_pred chHHHHHHHHHhchh
Confidence 233344455666543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00021 Score=72.85 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=89.6
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEE
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~ 122 (759)
.|......+...+..-+......++.+||-+|..+|....++.+- |. ..|+++++|+...+..... ++.++|+--+.
T Consensus 50 ~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~l-a~~R~NIiPIl 128 (229)
T PF01269_consen 50 VWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNL-AKKRPNIIPIL 128 (229)
T ss_dssp EE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH-HHHSTTEEEEE
T ss_pred ecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHH-hccCCceeeee
Confidence 487777788877776665555578999999999999999999885 42 2599999999877665533 34568999999
Q ss_pred eecccCC------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 123 MDMTSMQ------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 123 ~D~~~~~------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.|++... +..|+|++.-..+.+.+-+..++...||+||.+++..
T Consensus 129 ~DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 129 EDARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp S-TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 9998766 8999999987767778889999999999999998875
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0004 Score=75.51 Aligned_cols=159 Identities=13% Similarity=0.212 Sum_probs=98.3
Q ss_pred chhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh--------CCCeEEEEeCCHHHHHHHHHHhccC---CCC
Q 004354 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------GFHGITNVDFSKVVISDMLRRNVRD---RSD 117 (759)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~--------G~~~VtgIDiS~~~I~~a~~r~~~~---~~~ 117 (759)
....+..++..++.. .++.+|||.+||+|.+...+.+. .-.+++|+|+++.++..++-++.-. ...
T Consensus 30 TP~~i~~l~~~~~~~---~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~ 106 (311)
T PF02384_consen 30 TPREIVDLMVKLLNP---KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSN 106 (311)
T ss_dssp --HHHHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBG
T ss_pred hHHHHHHHHHhhhhc---cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccc
Confidence 446677788888854 56678999999999999887762 2346999999999998877654222 123
Q ss_pred cEEEEeecccCC-----CcccEEEeCCC--Ch---------------------hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 118 MRWRVMDMTSMQ-----GGLDALMEPEL--GH---------------------KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 118 i~f~~~D~~~~~-----gtfD~Ii~~~~--~~---------------------~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
..+.+.|....+ ..||+|++++. .. ..-..++..+.+.|++||++.++....
T Consensus 107 ~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 107 INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred ccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 457888876544 57999998541 00 012357889999999999987776321
Q ss_pred --------hhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCC
Q 004354 170 --------SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 213 (759)
Q Consensus 170 --------~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~ 213 (759)
..+++.++.. .+...+..++..--.....+..+++++|.++
T Consensus 187 ~L~~~~~~~~iR~~ll~~---~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 187 FLFSSSSEKKIRKYLLEN---GYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp HHHGSTHHHHHHHHHHHH---EEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred hhhccchHHHHHHHHHhh---chhhEEeecccceecccCcCceEEEEeeccc
Confidence 1233333332 3344455555422235678899999999775
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00025 Score=73.71 Aligned_cols=90 Identities=10% Similarity=0.058 Sum_probs=65.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.||+|+|.++..|.+.+ ..+|++||+++.|++.|++.- ..+++|+.+. .
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~l----p------------ 105 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD--------DKVVGSFEAL----P------------ 105 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc--------ceEEechhhC----C------------
Confidence 36799999999999998888876 469999999999999998741 2456776542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ 670 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~ 670 (759)
..+..||+|++ ......+. --+..++.+++.|+|.
T Consensus 106 -----------------~~d~sfD~v~~----~~~l~~~~------d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 106 -----------------FRDKSFDVVMS----SFALHASD------NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred -----------------CCCCCEEEEEe----cChhhccC------CHHHHHHHHHHHhcCc
Confidence 12478999998 21111111 1266999999999994
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00011 Score=82.01 Aligned_cols=109 Identities=12% Similarity=0.117 Sum_probs=81.1
Q ss_pred hhHHHHHHhhcCCCCC-CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccC
Q 004354 52 QLRDPLISLIGAPTSS-PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~-~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~ 128 (759)
++...+.+.+.. . ++.+|||++||+|.++..++.. +...|+++|+++.+++.+++++... ..++++.++|+..+
T Consensus 43 dl~~~v~~~~~~---~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~ 119 (382)
T PRK04338 43 DISVLVLRAFGP---KLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL 119 (382)
T ss_pred hHHHHHHHHHHh---hcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH
Confidence 344444455432 1 2468999999999999999765 5557999999999999998876443 34567899998653
Q ss_pred ---CCcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 129 ---QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 129 ---~gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
.+.||+|+.+.. .....++....+.+++||.+++.
T Consensus 120 l~~~~~fD~V~lDP~--Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 120 LHEERKFDVVDIDPF--GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred HhhcCCCCEEEECCC--CCcHHHHHHHHHHhcCCCEEEEE
Confidence 257999999763 23467888877888999888877
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.8e-05 Score=71.61 Aligned_cols=99 Identities=17% Similarity=0.258 Sum_probs=69.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|.|.+...++.. +. ++++||+++.+++. ..+.....++....
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~--------------- 73 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR-GF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPP--------------- 73 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT-TS-EEEEEESSHHHHHH----------TTSEEEEEECHTHH---------------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-CC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhh---------------
Confidence 56789999999999999888766 33 99999999999998 11222222111110
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
..+..||+|+. .+....+ + --..+|+.+++.|+|||++++-...+.
T Consensus 74 ------------------~~~~~fD~i~~----~~~l~~~---~---d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 74 ------------------FPDGSFDLIIC----NDVLEHL---P---DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp ------------------CHSSSEEEEEE----ESSGGGS---S---HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ------------------ccccchhhHhh----HHHHhhc---c---cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 01368999998 1211111 1 137899999999999999999987764
|
... |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.7e-05 Score=77.04 Aligned_cols=102 Identities=17% Similarity=0.095 Sum_probs=73.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeEEEEccHHHHHHhhc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~------------~~~rl~v~i~Da~~~l~~~~ 596 (759)
...+||++|+|.|.-+.+|..+ +..|++||++|.-++.|.+.-++. ...+++++++|..++-...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~- 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD- 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc-
Confidence 3469999999999999999876 469999999999999876554442 2467888999877652110
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcE
Q 004354 597 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGL 672 (759)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gi 672 (759)
...||.|+- .. .-+.+||. ....+++.+.++|+|||.
T Consensus 114 -------------------------------~~~fd~v~D----~~--~~~~l~~~--~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 114 -------------------------------LADVDAVYD----RA--ALIALPEE--MRERYVQQLAALLPAGCR 150 (218)
T ss_pred -------------------------------CCCeeEEEe----hH--hHhhCCHH--HHHHHHHHHHHHcCCCCe
Confidence 146888864 11 11222332 247799999999999985
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0002 Score=78.19 Aligned_cols=109 Identities=7% Similarity=0.059 Sum_probs=76.5
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
+.+||.+|.|.|.++..|... ..+|++||+++.+++.|++......-++++++.+|+.++....
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~-------------- 237 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ-------------- 237 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc--------------
Confidence 478999999999999988874 3699999999999999998872211247999999999886432
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
...||+|++|. |..=+..+.++.+.. +.|++++.+- |....+.+.
T Consensus 238 ------------------~~~~D~Vv~dP------------Pr~G~~~~~~~~l~~-~~~~~ivyvs--c~p~t~~rd 282 (315)
T PRK03522 238 ------------------GEVPDLVLVNP------------PRRGIGKELCDYLSQ-MAPRFILYSS--CNAQTMAKD 282 (315)
T ss_pred ------------------CCCCeEEEECC------------CCCCccHHHHHHHHH-cCCCeEEEEE--CCcccchhH
Confidence 14699999973 221123455555443 6777766644 444444333
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00038 Score=79.28 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=78.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|.|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++.....
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~----------- 358 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW----------- 358 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh-----------
Confidence 44689999999999998888764 48999999999999999987432235799999999998765320
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
.+..||+|++|.... | +..++++.+.+ |+|++++.+-
T Consensus 359 ------------------~~~~~D~vi~dPPr~----G--------~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 359 ------------------AGQIPDVLLLDPPRK----G--------CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred ------------------cCCCCCEEEECcCCC----C--------CCHHHHHHHHh-cCCCEEEEEc
Confidence 124699999965321 2 24778887664 8898876653
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00024 Score=74.69 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=67.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-----------------------------CCc
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-----------------------------SDM 118 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-----------------------------~~i 118 (759)
.+.++||||||.-.....-+..-+++|+..|+++.-.+..++.+.+.. ..+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 456899999999665433333457789999999998887766553321 012
Q ss_pred -EEEEeecccCC---------CcccEEEeCC------CChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 119 -RWRVMDMTSMQ---------GGLDALMEPE------LGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 119 -~f~~~D~~~~~---------gtfD~Ii~~~------~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.++..|+++.+ .+||+|++.. .......+.++++.++|||||.|+++..
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 35678887765 2499998754 2344588999999999999999999864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00016 Score=79.15 Aligned_cols=102 Identities=15% Similarity=0.078 Sum_probs=72.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHH---hhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAE---DYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~---~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||+|.|.++..+....+. .|++||+++.++..++ ++.+. +.++.++.+|..+. .
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~--~~~i~~~~~d~e~l----p--------- 185 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGN--DQRAHLLPLGIEQL----P--------- 185 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEeCCHHHC----C---------
Confidence 3479999999999998888887554 6999999999886432 33332 56799999886543 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
. ...||+|+. .....-+. --..+|+.+++.|+|||.|++..
T Consensus 186 --------------------~-~~~FD~V~s----~~vl~H~~------dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 --------------------A-LKAFDTVFS----MGVLYHRR------SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred --------------------C-cCCcCEEEE----CChhhccC------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 0 257999997 11000011 12579999999999999999864
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00028 Score=74.57 Aligned_cols=95 Identities=12% Similarity=0.230 Sum_probs=74.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc-----cCCCCcEEEEeecccCC-CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQ-GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~-----~~~~~i~f~~~D~~~~~-gtfD~Ii~~~~ 140 (759)
+.+.+||-+|.|.|..++++++.. .+|+-+||++.+++.+++.+. -..|+++.+. .+.+.. ++||+|++...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~~~~~~fDVIIvDs~ 148 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDLDIKKYDLIICLQE 148 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhhccCCcCCEEEEcCC
Confidence 356899999999999999999874 479999999999999988442 1346777665 233322 78999999754
Q ss_pred ChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 141 GHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 141 ~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
. ...+++.++|.|+|||.++.-+
T Consensus 149 ~---~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 149 P---DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred C---ChHHHHHHHHhcCCCcEEEECC
Confidence 3 2678899999999999998864
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00029 Score=73.23 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=75.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHh----CCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC----MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~----~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
..+.+||.||+|+|.++..|... .+..+|++||++|.+++.|++.... ++++++..|+-..- . .
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~l~-~-~------- 126 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---PGVTFRQAVSDELV-A-E------- 126 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---CCCeEEEEeccccc-c-c-------
Confidence 45679999999999988887754 3456999999999999999988642 34666666543321 0 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
+.+||+|++ .....- ++++. -..+|+.+.+.++ |.+++|-..+...
T Consensus 127 ------------------------~~~fD~V~~----~~~lhh--~~d~~--~~~~l~~~~r~~~--~~~~i~dl~~~~~ 172 (232)
T PRK06202 127 ------------------------GERFDVVTS----NHFLHH--LDDAE--VVRLLADSAALAR--RLVLHNDLIRSRL 172 (232)
T ss_pred ------------------------CCCccEEEE----CCeeec--CChHH--HHHHHHHHHHhcC--eeEEEeccccCHH
Confidence 357999998 211110 11111 1469999999887 6777777777643
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00018 Score=76.06 Aligned_cols=99 Identities=19% Similarity=0.294 Sum_probs=69.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc---CC--------------------------C-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR---DR--------------------------S- 116 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~---~~--------------------------~- 116 (759)
..+.+||..|||.|+++..++..||. +.|.|+|--|+=...=.+.. .. |
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34579999999999999999999996 99999999886322111110 00 1
Q ss_pred -----------CcEEEEeecccCC------CcccEEEeCC--CChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 117 -----------DMRWRVMDMTSMQ------GGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 117 -----------~i~f~~~D~~~~~------gtfD~Ii~~~--~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
++....+|+.+.- +.||+|++.. .....+-.+++.|.++|||||.+|=+.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~G 202 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFG 202 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecC
Confidence 2444455554443 5899998754 223348899999999999999776553
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.7e-05 Score=77.72 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=67.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Ccc
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GGL 132 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gtf 132 (759)
.+.++||+||++|.++..+.+.+ ...|+|+|+.+. ...+.+.++++|+++.. +.+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccccceeeeecccchhhHHHhhhhhccccccCc
Confidence 45899999999999999999987 356999999884 12245666666665543 379
Q ss_pred cEEEeCCC---------Chh----HHHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 133 DALMEPEL---------GHK----LGNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 133 D~Ii~~~~---------~~~----~~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
|+|+|... .+. .....+.-+.+.|+|||.+++-.+..++.
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 99999651 111 14555566678899999999998876544
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0001 Score=74.92 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=69.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--gtfD~Ii~~~~~ 141 (759)
.++..|||+.||-|.++..++.. ....|+++|++|.+++.+++...... ..+...++|+.++. +.+|-|+++...
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp~ 179 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLPE 179 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--TS
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECChH
Confidence 46889999999999999999983 34569999999999999988765432 45889999999886 899999996532
Q ss_pred hhHHHHHHHHHHHhcccCcEEE
Q 004354 142 HKLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 142 ~~~~~~~l~ei~rvLkpGG~li 163 (759)
. ...++..+.+++++||.+.
T Consensus 180 ~--~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 180 S--SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp S--GGGGHHHHHHHEEEEEEEE
T ss_pred H--HHHHHHHHHHHhcCCcEEE
Confidence 2 3468888999999998864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00047 Score=68.88 Aligned_cols=102 Identities=14% Similarity=-0.010 Sum_probs=81.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC------CcccEEEeCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ------GGLDALMEPE 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~------gtfD~Ii~~~ 139 (759)
.+.++||+-+|+|.++.+.+.+|...++.||.+..++...+++..... .++.++.+|+.... +.||+|+..+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 578999999999999999999999999999999999999988876544 67889999988442 3499999987
Q ss_pred CChhH-H--HHHHHH--HHHhcccCcEEEEEEcCc
Q 004354 140 LGHKL-G--NQYLSE--VKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 140 ~~~~~-~--~~~l~e--i~rvLkpGG~liiit~~~ 169 (759)
..+.. . ...+.. -..+|+|+|.+++-.-..
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 54432 3 222333 457899999999887544
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00032 Score=74.35 Aligned_cols=99 Identities=18% Similarity=0.229 Sum_probs=72.8
Q ss_pred CCCeEEEECCCcchhH----HHHHHhC-----C-CeEEEEeCCHHHHHHHHHHhcc------C------------C----
Q 004354 68 PPPQILVPGCGNSRLS----EHLYDAG-----F-HGITNVDFSKVVISDMLRRNVR------D------------R---- 115 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls----~~L~~~G-----~-~~VtgIDiS~~~I~~a~~r~~~------~------------~---- 115 (759)
...+|.-.||+||.-. ..|.+.+ + -+|+|+|||..+|+.|++-.-. . .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3679999999999844 3333432 1 2599999999999988653211 0 0
Q ss_pred --------CCcEEEEeecccCC---CcccEEEeCCC----ChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 116 --------SDMRWRVMDMTSMQ---GGLDALMEPEL----GHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 116 --------~~i~f~~~D~~~~~---gtfD~Ii~~~~----~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
..|.|...|+.+.. +.||+|+|-+. ......+++..++..|+|||++++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 23677777776554 78999999773 34558999999999999999998764
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00063 Score=70.85 Aligned_cols=123 Identities=16% Similarity=0.226 Sum_probs=83.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeEEEEccHHH-HHHhhcccCccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIK-FVREMKSSSATDEMSV 606 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-gl~~~~rl~v~i~Da~~-~l~~~~~~~~~~~~~~ 606 (759)
.+..+|.+|.|.|+++.++.+.+|..++++||.++..+.+|.++- -+.-..++.|++-+--. ...+.
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~----------- 216 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEH----------- 216 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccccc-----------
Confidence 344899999999999999999999999999999999999999875 22236788888542100 00000
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcC--------CCCCCCCCCCcCCCCCC--------hHHHHHHHHHccCcC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDV--------DSPDSSSGMTCPAADFV--------EGSFLLTVKDALSEQ 670 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~--------~s~d~~~g~scPp~~f~--------~~~fl~~~~~~L~~~ 670 (759)
+...+++|+|+..- -.-+++.+..-|+.++. -..++..+.+.|.||
T Consensus 217 ------------------~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~g 278 (328)
T KOG2904|consen 217 ------------------PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPG 278 (328)
T ss_pred ------------------ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccC
Confidence 11236788888622 11122233333444433 235677888999999
Q ss_pred cEEEEEecCC
Q 004354 671 GLFIVNLVSR 680 (759)
Q Consensus 671 Gilv~N~~~~ 680 (759)
|.+.+++..+
T Consensus 279 g~~~le~~~~ 288 (328)
T KOG2904|consen 279 GFEQLELVER 288 (328)
T ss_pred CeEEEEeccc
Confidence 9999999844
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00042 Score=70.83 Aligned_cols=100 Identities=12% Similarity=0.059 Sum_probs=61.9
Q ss_pred CCCCCeEEEECCCcchhHHHHH-HhCCCeEEEEeCCHHHHHHHHHHhc----------cCCCCcEEEEeecccCC-----
Q 004354 66 SSPPPQILVPGCGNSRLSEHLY-DAGFHGITNVDFSKVVISDMLRRNV----------RDRSDMRWRVMDMTSMQ----- 129 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~L~-~~G~~~VtgIDiS~~~I~~a~~r~~----------~~~~~i~f~~~D~~~~~----- 129 (759)
..+++..+|||||.|......+ ..+++..+||++.+...+.|..... ....++++..+|+.+..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 4678999999999999987765 3488889999999998876654221 12346788899987754
Q ss_pred -CcccEEEeCCCC-hhHHHHHHHHHHHhcccCcEEEEE
Q 004354 130 -GGLDALMEPELG-HKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 130 -gtfD~Ii~~~~~-~~~~~~~l~ei~rvLkpGG~liii 165 (759)
..-|+|++++.. .......+.+...-||+|-++|..
T Consensus 120 ~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 457999998743 233555667777888988877644
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00042 Score=79.20 Aligned_cols=112 Identities=11% Similarity=0.056 Sum_probs=79.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|.|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++....
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~------------ 362 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP------------ 362 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh------------
Confidence 34689999999999998888775 5899999999999999998732222469999999988864421
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
..+..||+|++|.-- .| . .+.++.+.+ |++++++.+-+ ....+.+.
T Consensus 363 -----------------~~~~~fD~Vi~dPPr----~g--------~-~~~~~~l~~-~~~~~ivyvSC--np~tlaRD 408 (443)
T PRK13168 363 -----------------WALGGFDKVLLDPPR----AG--------A-AEVMQALAK-LGPKRIVYVSC--NPATLARD 408 (443)
T ss_pred -----------------hhcCCCCEEEECcCC----cC--------h-HHHHHHHHh-cCCCeEEEEEe--ChHHhhcc
Confidence 012469999996421 11 1 456666655 68899877554 44444444
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00056 Score=75.79 Aligned_cols=128 Identities=14% Similarity=0.155 Sum_probs=78.0
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC--
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~-- 129 (759)
+...+.+++.. .++ .|||+-||.|.++..|++. +.+|+|||+++.+++.|++++... ..+++|+++++.+..
T Consensus 185 l~~~~~~~l~~---~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~ 259 (352)
T PF05958_consen 185 LYEQALEWLDL---SKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKA 259 (352)
T ss_dssp HHHHHHHHCTT----TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCH
T ss_pred HHHHHHHHhhc---CCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHH
Confidence 34444555553 333 8999999999999999876 567999999999999999887543 467999998875542
Q ss_pred -----------------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEE
Q 004354 130 -----------------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHA 190 (759)
Q Consensus 130 -----------------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~ 190 (759)
..+|+|+..+.-.-....+++.+.+ + .+++.++..+....+.+-.. ..+|.+....
T Consensus 260 ~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~---~-~~ivYvSCnP~tlaRDl~~L-~~~y~~~~v~ 332 (352)
T PF05958_consen 260 LAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKK---L-KRIVYVSCNPATLARDLKIL-KEGYKLEKVQ 332 (352)
T ss_dssp HCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHH---S-SEEEEEES-HHHHHHHHHHH-HCCEEEEEEE
T ss_pred HHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhc---C-CeEEEEECCHHHHHHHHHHH-hhcCEEEEEE
Confidence 2579999865221112334444433 2 48888888766554444332 2367665433
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00014 Score=74.85 Aligned_cols=102 Identities=22% Similarity=0.260 Sum_probs=72.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||+|+|.++..+... ..+|++||++|.+++.|++.+... ..+++.++++|..+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------------- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--------------- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------------
Confidence 35679999999999999888875 359999999999999999987432 124789999986542
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEE-cCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~-D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
...||+|+. ++..- + |+.. -..+++.+.+.+++++++.++
T Consensus 117 ---------------------~~~fD~ii~~~~l~~-----~--~~~~--~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 117 ---------------------CGEFDIVVCMDVLIH-----Y--PASD--MAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred ---------------------CCCcCEEEEhhHHHh-----C--CHHH--HHHHHHHHHHHhCCCEEEEEC
Confidence 146999986 22110 0 1211 245788888888876666543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00052 Score=74.72 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=47.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeEEEEc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHIT 586 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~--~~~rl~v~i~ 586 (759)
+...++|.||.|+|++...|....+..+++++||||..++.|++..... -.++++++..
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~ 173 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQ 173 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEc
Confidence 4568999999999977777776667889999999999999999988442 2467888653
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00012 Score=78.66 Aligned_cols=74 Identities=11% Similarity=0.072 Sum_probs=58.0
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~ 129 (759)
.+...+...+.. .++..+||.+||.|..+..+++.. ...|+|+|.++.+++.+++++.. ..+++++++|+.++.
T Consensus 6 Vll~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 6 VLLDEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLK 81 (296)
T ss_pred ccHHHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHH
Confidence 444445555543 577899999999999999999874 24699999999999999988755 557888888876653
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00028 Score=79.86 Aligned_cols=126 Identities=11% Similarity=0.135 Sum_probs=87.6
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~-- 129 (759)
+.....+++.. .++.++||+=||.|.++..|++. ..+|+|+|+++.+++.|+++++..+ .|++|..+|++++.
T Consensus 281 l~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 281 LYETALEWLEL---AGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHhh---cCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 33444455544 56789999999999999999976 5569999999999999998876543 56999999998876
Q ss_pred ----CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCc
Q 004354 130 ----GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 184 (759)
Q Consensus 130 ----gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w 184 (759)
..+|+|+.++.-.-....+++.+.+.- |- +++.++..+..+.+.+-.....+.
T Consensus 357 ~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~-p~-~IvYVSCNP~TlaRDl~~L~~~gy 413 (432)
T COG2265 357 WWEGYKPDVVVVDPPRAGADREVLKQLAKLK-PK-RIVYVSCNPATLARDLAILASTGY 413 (432)
T ss_pred ccccCCCCEEEECCCCCCCCHHHHHHHHhcC-CC-cEEEEeCCHHHHHHHHHHHHhCCe
Confidence 378999997632222345566655543 33 355666666555554444333344
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00084 Score=70.93 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=79.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHhccCC-CCc-EEEEeecccCC------CcccEE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG---FHGITNVDFSKVVISDMLRRNVRDR-SDM-RWRVMDMTSMQ------GGLDAL 135 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G---~~~VtgIDiS~~~I~~a~~r~~~~~-~~i-~f~~~D~~~~~------gtfD~I 135 (759)
..+.+||||.||.|+......... ...|.-.|+|+..++..++.++..+ .++ +|.+.|+.+.. ...+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 356799999999999988777652 3469999999999999988875543 445 99999998875 457888
Q ss_pred EeCCC-----ChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 136 MEPEL-----GHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 136 i~~~~-----~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+.+.. ....+...+..+.+.+.|||++|...
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 87652 22347888999999999999999775
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00055 Score=68.89 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=96.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.+..+||.||.|-|....|+++.-|. +-..+|..|.|++--|++-- .+-+++.+..+-=.+.+..+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw-~ek~nViil~g~WeDvl~~L~----------- 166 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGW-REKENVIILEGRWEDVLNTLP----------- 166 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhccc-ccccceEEEecchHhhhcccc-----------
Confidence 56789999999999999999999665 77889999999999988853 345667777765555555554
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE-EEecCCChhHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI-VNLVSRSQATKD 686 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv-~N~~~~~~~~~~ 686 (759)
++.||=|..|.++.-+. -..+|.+.+-++|+|+|+|. +|..+-+..+.-
T Consensus 167 --------------------d~~FDGI~yDTy~e~yE----------dl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~ 216 (271)
T KOG1709|consen 167 --------------------DKHFDGIYYDTYSELYE----------DLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFY 216 (271)
T ss_pred --------------------ccCcceeEeechhhHHH----------HHHHHHHHHhhhcCCCceEEEecCcccchhhhh
Confidence 45699999999876321 13779999999999999998 688877766433
Q ss_pred HHHHHHHHhcCceEEEeec
Q 004354 687 MVISRMKMVFNHLFCLQLE 705 (759)
Q Consensus 687 ~v~~~l~~vF~~v~~~~~~ 705 (759)
.++..+..+++.
T Consensus 217 -------~vy~~lV~iev~ 228 (271)
T KOG1709|consen 217 -------DVYKILVMIEVA 228 (271)
T ss_pred -------hhhheeEEEEee
Confidence 255555555543
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00018 Score=72.26 Aligned_cols=107 Identities=18% Similarity=0.287 Sum_probs=77.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..++|.+=.|+|++..-.... ....++.||.|+..+.+.++.. ++ .++++++.+|+..++.....
T Consensus 43 g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~--~~~~~v~~~d~~~~l~~~~~--------- 110 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGL--EDKIRVIKGDAFKFLLKLAK--------- 110 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEESSHHHHHHHHHH---------
T ss_pred CCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhCC--CcceeeeccCHHHHHHhhcc---------
Confidence 479999999999998754444 2359999999999999999987 44 45899999999999987631
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC--hHHHHHHHH--HccCcCcEEEEEecCC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV--EGSFLLTVK--DALSEQGLFIVNLVSR 680 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~--~~~fl~~~~--~~L~~~Gilv~N~~~~ 680 (759)
...+||+|++|. |-..- -.+.++.+. ..|+++|++++-....
T Consensus 111 --------------------~~~~fDiIflDP------------PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 111 --------------------KGEKFDIIFLDP------------PYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --------------------CTS-EEEEEE--------------STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred --------------------cCCCceEEEECC------------CcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 147899999963 33322 266777776 7899999999887544
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00026 Score=78.81 Aligned_cols=101 Identities=14% Similarity=0.214 Sum_probs=82.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
+.+||.+..|.|....-+....+ ...|+++|+||..++.+++...+..-+.++++.+|+..++....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~------------ 112 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRN------------ 112 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhC------------
Confidence 36899999999988876665543 35899999999999999999855433468999999999987643
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
.+||+|++|.+.. | ..|+..+.+.+.++|+|.+-
T Consensus 113 --------------------~~fDvIdlDPfGs--------~------~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 113 --------------------RKFHVIDIDPFGT--------P------APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --------------------CCCCEEEeCCCCC--------c------HHHHHHHHHhcccCCEEEEE
Confidence 5699999987532 1 46999999999999999876
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00033 Score=78.29 Aligned_cols=108 Identities=8% Similarity=0.080 Sum_probs=79.8
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 610 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~ 610 (759)
.+||.+|.|.|.++..+... ..+|++||+|+..++.|++......-++++++.+|+.+++....
T Consensus 235 ~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~-------------- 298 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQM-------------- 298 (374)
T ss_pred CEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcC--------------
Confidence 68999999999998888754 36899999999999999988732222479999999999875422
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 611 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
.+||+||+|. |..=+..++++.+.. ++|++++.+- |....+.+.
T Consensus 299 ------------------~~~D~vi~DP------------Pr~G~~~~~l~~l~~-~~p~~ivyvs--c~p~TlaRD 342 (374)
T TIGR02085 299 ------------------SAPELVLVNP------------PRRGIGKELCDYLSQ-MAPKFILYSS--CNAQTMAKD 342 (374)
T ss_pred ------------------CCCCEEEECC------------CCCCCcHHHHHHHHh-cCCCeEEEEE--eCHHHHHHH
Confidence 3599999973 222234677777754 7899887755 444555555
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00022 Score=77.56 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=71.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHH---HHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL---AEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~v---A~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||+|+|.+...+....+. .|++||+++.++.. ++++.+ .+.++.+...|..+. .
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~l----p--------- 184 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQL----H--------- 184 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHC----C---------
Confidence 4579999999999988777766443 79999999999864 344444 246788877764332 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
....||+|+. .....-+.. -..+|..+++.|+|||.|++..
T Consensus 185 ---------------------~~~~FD~V~s----~gvL~H~~d------p~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 185 ---------------------ELYAFDTVFS----MGVLYHRKS------PLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred ---------------------CCCCcCEEEE----cchhhccCC------HHHHHHHHHHhcCCCCEEEEEE
Confidence 0146999997 111000111 1579999999999999999864
|
Known examples to date are restricted to the proteobacteria. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.65 E-value=3.1e-05 Score=70.28 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=48.4
Q ss_pred EEEcccccHHHHHHHHhCCCC---cEEEEEcCH---HHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 534 VVIGLGAGLLPMFLHECMPFV---GIEAVELDL---TMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 534 LviGlG~G~l~~~L~~~~p~~---~i~~VEiDp---~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
|.||...|..+.++...++.. ++.+||.++ ..-+..++ .++ .++++++.+|..+++....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~--~~~~~~~~g~s~~~l~~~~----------- 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGL--SDRVEFIQGDSPDFLPSLP----------- 66 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHH-----------
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCC--CCeEEEEEcCcHHHHHHcC-----------
Confidence 578988887777776665443 699999999 45555544 344 4689999999999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+||+|++|.+.... .....|+.+..+|+|||++++.
T Consensus 67 --------------------~~~~dli~iDg~H~~~-----------~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 67 --------------------DGPIDLIFIDGDHSYE-----------AVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --------------------H--EEEEEEES---HH-----------HHHHHHHHHGGGEEEEEEEEEE
T ss_pred --------------------CCCEEEEEECCCCCHH-----------HHHHHHHHHHHHcCCCeEEEEe
Confidence 2689999999864321 1266789999999999999975
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00056 Score=75.13 Aligned_cols=110 Identities=18% Similarity=0.165 Sum_probs=78.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...++|.+|+|+|+++..+.. ....+.++|+|+.+++.|+..+ |+. .+.++.+|+.+. .
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g~~---~i~~~~~D~~~l----~--------- 243 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYGIE---DFFVKRGDATKL----P--------- 243 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhCCC---CCeEEecchhcC----C---------
Confidence 346899999999988765443 3569999999999999999776 552 288999997653 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCC-C--ChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-F--VEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~-f--~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.....||+|+.|.--+... +. ... + +-..+|+.+++.|+|||.+++-+...
T Consensus 244 --------------------~~~~~~D~Iv~dPPyg~~~-~~---~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 244 --------------------LSSESVDAIATDPPYGRST-TA---AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred --------------------cccCCCCEEEECCCCcCcc-cc---cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 0125799999975322111 00 111 1 23689999999999999998876543
|
This family is found exclusively in the Archaea. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00017 Score=76.56 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=77.5
Q ss_pred CCCeEEEEccccc-HHHHHHHH-hCCCCcEEEEEcCHHHHHHHHhhcC--CCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAG-LLPMFLHE-CMPFVGIEAVELDLTMLNLAEDYFG--FTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G-~l~~~L~~-~~p~~~i~~VEiDp~v~~vA~~~Fg--l~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.|.+|+.||.|.= ..+..|.. +.+...|+.+|+||+.++.|++-.. +.-+.+++++.+|+.+.-.+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--------- 190 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--------- 190 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc---------
Confidence 5679999999965 44445543 4567899999999999999988653 112789999999987653322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhH
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 684 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~ 684 (759)
..||+|++-+-- ||..- --.+.|+.+.+.++||..+++=-...-+.+
T Consensus 191 ------------------------~~~DvV~lAalV-----g~~~e----~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~ 237 (276)
T PF03059_consen 191 ------------------------KEYDVVFLAALV-----GMDAE----PKEEILEHLAKHMAPGARLVVRSAHGLRSF 237 (276)
T ss_dssp ---------------------------SEEEE-TT------S--------SHHHHHHHHHHHS-TTSEEEEEE--GGGGG
T ss_pred ------------------------ccCCEEEEhhhc-----ccccc----hHHHHHHHHHhhCCCCcEEEEecchhhHHH
Confidence 469999994432 22211 237899999999999999887532211222
Q ss_pred HHHHHH-HHHHhcCceEEEeecCC-ccEEEEEecCC
Q 004354 685 KDMVIS-RMKMVFNHLFCLQLEED-VNLVLFGLSSE 718 (759)
Q Consensus 685 ~~~v~~-~l~~vF~~v~~~~~~~~-~N~Vl~a~~~~ 718 (759)
....++ .-..-|.-+..+...++ +|.|+|+.+..
T Consensus 238 LYp~vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 238 LYPVVDPEDLRGFEVLAVVHPTDEVINSVVFARKKQ 273 (276)
T ss_dssp SS----TGGGTTEEEEEEE---TT---EEEEE----
T ss_pred cCCCCChHHCCCeEEEEEECCCCCceeEEEEEEecc
Confidence 111111 11125666666664444 69999997654
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.7e-05 Score=75.79 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=81.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc---CCCCcEEEEeecccCC-----CcccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR---DRSDMRWRVMDMTSMQ-----GGLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~---~~~~i~f~~~D~~~~~-----gtfD~Ii~~ 138 (759)
+.+.+|||...|-|..+...+++|..+|+.++-+|.+++.|.-+--. ....++.+.+|+.+.- .+||+|+-.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 56889999999999999999999997899999999999877543211 1135789999987654 789999986
Q ss_pred CC-----ChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 139 EL-----GHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 139 ~~-----~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+. .+--...+.++++|+|+|||+++-.+-.
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~ 247 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGN 247 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCC
Confidence 52 2112788999999999999999877643
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00017 Score=72.74 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=71.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
++.++|.||.|.|-.+.||... +..|++||+++.-++.+++.-.- ++=.++....|-.++ .
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~-~~l~i~~~~~Dl~~~----~------------ 90 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEE-EGLDIRTRVADLNDF----D------------ 90 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHH-TT-TEEEEE-BGCCB----S------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhh-cCceeEEEEecchhc----c------------
Confidence 4679999999999999999998 46999999999998877665411 111378888873322 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
-...||+|+..+-- +-++++.+ +.+++.++..++|||++++...
T Consensus 91 ------------------~~~~yD~I~st~v~------~fL~~~~~--~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 91 ------------------FPEEYDFIVSTVVF------MFLQRELR--PQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -------------------TTTEEEEEEESSG------GGS-GGGH--HHHHHHHHHTEEEEEEEEEEEE
T ss_pred ------------------ccCCcCEEEEEEEe------ccCCHHHH--HHHHHHHHhhcCCcEEEEEEEe
Confidence 12579999874311 12233322 6789999999999999887543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00019 Score=79.95 Aligned_cols=96 Identities=5% Similarity=0.012 Sum_probs=79.4
Q ss_pred CCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----CcccEEEeCCCC
Q 004354 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----GGLDALMEPELG 141 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----gtfD~Ii~~~~~ 141 (759)
+.+|||+.||+|..+..++.. |.+.|+++|+++.+++.++++..... .++.+.+.|+..+. ..||+|...+.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPf- 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPF- 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCC-
Confidence 358999999999999999887 67889999999999999988875433 35788999987654 57999999763
Q ss_pred hhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 142 HKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 142 ~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.....++..+.+.+++||.+++..
T Consensus 124 -Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 -GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CCcHHHHHHHHHhcccCCEEEEEe
Confidence 234579999999999999988774
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00039 Score=79.56 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=81.1
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----CcccEEEeCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----GGLDALMEPE 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----gtfD~Ii~~~ 139 (759)
.++.+|||++||.|.=+.+++..- -..|++.|+++.-++.+++++.+.+ .++.+.+.|...+. +.||.|++..
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 678999999999999999998751 2359999999999999888876543 56788888887654 7899999532
Q ss_pred ----CC----------h----------hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 140 ----LG----------H----------KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 140 ----~~----------~----------~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.. . ....++|..+.+.|||||+++..|.+
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 10 0 01478899999999999999999876
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00027 Score=73.46 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=64.6
Q ss_pred CCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-CcccEEEeCC
Q 004354 65 TSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-GGLDALMEPE 139 (759)
Q Consensus 65 ~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-gtfD~Ii~~~ 139 (759)
..++.+.|||+|.|||.++..|++.|-+ |+++++++.|+....++..... ..++.+++|+...+ ..||.++++-
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kk-VvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNl 131 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKK-VVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNL 131 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCe-EEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccC
Confidence 3478899999999999999999999775 9999999999999988875433 56899999999888 8899999853
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0011 Score=67.81 Aligned_cols=136 Identities=14% Similarity=0.143 Sum_probs=97.0
Q ss_pred EEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc-CC-C-cccEEEeCCCChhHH
Q 004354 72 ILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS-MQ-G-GLDALMEPELGHKLG 145 (759)
Q Consensus 72 ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~-~~-g-tfD~Ii~~~~~~~~~ 145 (759)
|.||||--|.+..+|.+.|. ..++++|+++..++.|++.....+ ..++++.+|-.+ ++ + ..|.|+.....-...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~lI 80 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGELI 80 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHHH
Confidence 68999999999999999986 469999999999999999886543 569999999654 44 4 389998887777778
Q ss_pred HHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCC
Q 004354 146 NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 213 (759)
Q Consensus 146 ~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~ 213 (759)
..++++....++....|++........++.++... +|.+.-..+-.+ ....|-++++.+...
T Consensus 81 ~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~--gf~I~~E~lv~e----~~~~YeIi~~~~~~~ 142 (205)
T PF04816_consen 81 IEILEAGPEKLSSAKRLILQPNTHAYELRRWLYEN--GFEIIDEDLVEE----NGRFYEIIVAERGEE 142 (205)
T ss_dssp HHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHT--TEEEEEEEEEEE----TTEEEEEEEEEESSS
T ss_pred HHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHC--CCEEEEeEEEeE----CCEEEEEEEEEeCCC
Confidence 88999988888877788888877766666666543 788887777553 235555555555543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00066 Score=62.43 Aligned_cols=97 Identities=27% Similarity=0.354 Sum_probs=68.9
Q ss_pred EEEECCCcchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHhccCCCC--cEEEEeeccc--CC--C--cccEEEeCCCC
Q 004354 72 ILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTS--MQ--G--GLDALMEPELG 141 (759)
Q Consensus 72 ILDlGCG~G~ls~~L~~~G~--~~VtgIDiS~~~I~~a~~r~~~~~~~--i~f~~~D~~~--~~--g--tfD~Ii~~~~~ 141 (759)
+||+|||+|... .+..... ..++|+|+++.++..++..... ... +.+...|... .+ . .||++......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 3333322 2589999999999885544322 222 6888888765 44 3 79999333322
Q ss_pred hhH-HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 142 HKL-GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 142 ~~~-~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++. ....+.++.+.|+|+|.+++......
T Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 222 58899999999999999999887643
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.001 Score=70.76 Aligned_cols=122 Identities=15% Similarity=0.215 Sum_probs=84.8
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~ 129 (759)
.+.+.+.+.+.+.. .++..|||+|+|.|.++..|++.+ ++++++|+++..++..+++.. ..++++++..|+.++.
T Consensus 15 ~~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 15 DPNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSC
T ss_pred CHHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-hcccceeeecchhccc
Confidence 34566667777754 578899999999999999999997 789999999999998888764 5678999999999887
Q ss_pred --C----cccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcc
Q 004354 130 --G----GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP 178 (759)
Q Consensus 130 --g----tfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~ 178 (759)
. .-..|+++ .+......++..+...-+. |+.-++.+-|..+..++..
T Consensus 90 ~~~~~~~~~~~vv~N-lPy~is~~il~~ll~~~~~-g~~~~~l~vq~e~a~rl~a 142 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGN-LPYNISSPILRKLLELYRF-GRVRMVLMVQKEVAERLLA 142 (262)
T ss_dssp GGGHCSSSEEEEEEE-ETGTGHHHHHHHHHHHGGG-CEEEEEEEEEHHHHHHHHT
T ss_pred cHHhhcCCceEEEEE-ecccchHHHHHHHhhcccc-cccceEEEEehhhhhhccC
Confidence 2 23355553 3444455666666664344 3333333334445555544
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=66.35 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=98.2
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~ 123 (759)
+|......+...+..=++.....++.+||=+|+.+|....++.+- |-..++++++|+.+........ ..++|+--+..
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a-~~R~Ni~PIL~ 131 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVA-EKRPNIIPILE 131 (231)
T ss_pred eeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHH-HhCCCceeeec
Confidence 688777778777777666556688999999999999999999886 4235999999998877665544 45688989999
Q ss_pred ecccCC------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 124 DMTSMQ------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 124 D~~~~~------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
|+.... +..|+|++.-..+.+.+-+..++...||+||.+++.
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 998876 789999997776777888999999999999976665
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0013 Score=72.85 Aligned_cols=126 Identities=12% Similarity=0.180 Sum_probs=82.3
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 610 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~ 610 (759)
.++|.+|.|.|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++.........
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~--------- 267 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREF--------- 267 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccc---------
Confidence 469999999999999998885 389999999999999999884432346999999999998642100000
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHHH
Q 004354 611 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVIS 690 (759)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 690 (759)
..... ......+||+|++|--. .| +..++++.+.+ +++++.+- |....+.+. +.
T Consensus 268 -------~~~~~-~~~~~~~~d~v~lDPPR----~G--------~~~~~l~~l~~---~~~ivYvs--C~p~tlaRD-l~ 321 (353)
T TIGR02143 268 -------RRLKG-IDLKSYNCSTIFVDPPR----AG--------LDPDTCKLVQA---YERILYIS--CNPETLKAN-LE 321 (353)
T ss_pred -------ccccc-cccccCCCCEEEECCCC----CC--------CcHHHHHHHHc---CCcEEEEE--cCHHHHHHH-HH
Confidence 00000 00001248999997532 12 23667777655 68877754 455555555 33
Q ss_pred HHH
Q 004354 691 RMK 693 (759)
Q Consensus 691 ~l~ 693 (759)
.|.
T Consensus 322 ~L~ 324 (353)
T TIGR02143 322 QLS 324 (353)
T ss_pred HHh
Confidence 443
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00046 Score=72.54 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=66.4
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-C-
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-G- 130 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-g- 130 (759)
..+.+...+.. .+++.|||||+|.|.++..|++.+.. |+++++++.+++..+++.. ...+++.+.+|+.... .
T Consensus 18 v~~kIv~~a~~---~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 18 VIDKIVEAANI---SPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHhcCC---CCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcchh
Confidence 34445455443 56889999999999999999999775 9999999999998888764 4578999999999887 3
Q ss_pred --cccEEEeCC
Q 004354 131 --GLDALMEPE 139 (759)
Q Consensus 131 --tfD~Ii~~~ 139 (759)
.++.|+++-
T Consensus 93 l~~~~~vVaNl 103 (259)
T COG0030 93 LAQPYKVVANL 103 (259)
T ss_pred hcCCCEEEEcC
Confidence 578888763
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0018 Score=70.68 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=86.2
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
++..|||.=||-|.++..++..|...|+++|++|.+++.+++++..+. ..+..+++|..... +.+|-|+.+...
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~- 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK- 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC-
Confidence 588999999999999999999987669999999999999999875443 33889999999887 679999987532
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
....++..+.+.+++||.+.+-.+.++..
T Consensus 267 -~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 267 -SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred -cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 24578888888999999999998876543
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.001 Score=73.22 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=83.4
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC------C----------------------------------
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF------H---------------------------------- 92 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~------~---------------------------------- 92 (759)
+...+...... .++..++|.=||+|++....+-.+. .
T Consensus 179 LAaAil~lagw---~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 179 LAAAILLLAGW---KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred HHHHHHHHcCC---CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 33444444443 4556899999999999988766541 1
Q ss_pred eEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---CcccEEEeCCC------Chh----HHHHHHHHHHHhcc
Q 004354 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPEL------GHK----LGNQYLSEVKRLLK 157 (759)
Q Consensus 93 ~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~~------~~~----~~~~~l~ei~rvLk 157 (759)
.++|+|+++.+|+.|+.++...+ ..++|.++|+.++. ..+|+|+|+.. .+. ....+.+.+++.++
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 27799999999999999886655 35999999999887 58999999862 111 24566667778888
Q ss_pred cCcEEEEEEc
Q 004354 158 SGGKFVCLTL 167 (759)
Q Consensus 158 pGG~liiit~ 167 (759)
..+++++++.
T Consensus 336 ~ws~~v~tt~ 345 (381)
T COG0116 336 GWSRYVFTTS 345 (381)
T ss_pred CCceEEEEcc
Confidence 8888888875
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00087 Score=72.36 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=51.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~ 591 (759)
...+||.||.|.|.++..|.... .++++||+|+.+++.+++.+... ..++++++.+|++++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 34689999999999999888763 48999999999999999988422 246899999999875
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00033 Score=71.38 Aligned_cols=106 Identities=25% Similarity=0.377 Sum_probs=68.9
Q ss_pred CCCCeEEEEcccccHHHH-HHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHH-HHHhhcccCcccccc
Q 004354 528 GKSVKAVVIGLGAGLLPM-FLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK-FVREMKSSSATDEMS 605 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~-~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~-~l~~~~~~~~~~~~~ 605 (759)
....++|..|.|.|-.+. +|... ..+|+.||..+..++.|+++++- ..+++.-+..=|++ |..
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~-~~~~v~~~~~~gLQ~f~P------------ 118 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGK-DNPRVGEFYCVGLQDFTP------------ 118 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCC-GGCCEEEEEES-GGG---------------
T ss_pred CCcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcc-cCCCcceEEecCHhhccC------------
Confidence 356799999999997776 44444 35999999999999999999874 23455444444444 311
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEE--EecCC
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIV--NLVSR 680 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~--N~~~~ 680 (759)
...+||+|-+=-. -.+|.+ .+||+.|+..|+|+|++++ |+...
T Consensus 119 ---------------------~~~~YDlIW~QW~-----------lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~ 166 (218)
T PF05891_consen 119 ---------------------EEGKYDLIWIQWC-----------LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS 166 (218)
T ss_dssp ----------------------TT-EEEEEEES------------GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred ---------------------CCCcEeEEEehHh-----------hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC
Confidence 1368999998221 122332 4589999999999999997 77554
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0016 Score=63.38 Aligned_cols=111 Identities=11% Similarity=0.144 Sum_probs=80.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
.....||.+|-|+|.++..+..+ .+...++++|.+++-+..-.+.|. .++++.|||...=....
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~~~ii~gda~~l~~~l~---------- 111 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----GVNIINGDAFDLRTTLG---------- 111 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----CccccccchhhHHHHHh----------
Confidence 45568999999999999866655 467799999999999999988873 35699999987533332
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
+..+..||.||.-+ +.. +-|+. .+-+.|+.+..+|..||.|+.=-.+
T Consensus 112 ------------------e~~gq~~D~viS~l----Pll--~~P~~--~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 112 ------------------EHKGQFFDSVISGL----PLL--NFPMH--RRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred ------------------hcCCCeeeeEEecc----ccc--cCcHH--HHHHHHHHHHHhcCCCCeEEEEEec
Confidence 12357899999833 111 11111 3678999999999999988754434
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00023 Score=74.76 Aligned_cols=126 Identities=22% Similarity=0.275 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcCCCCcc--ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHH
Q 004354 28 KENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (759)
Q Consensus 28 ~~yWd~~y~~~~~~~~~--eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~ 105 (759)
++|.-+.|.... .+| .-+..|+..++.+... ..+..+||+|||+|.....= ..-.++|.|++...+.
T Consensus 11 qeyVh~IYd~ia--~~fs~tr~~~Wp~v~qfl~~~------~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~ 79 (293)
T KOG1331|consen 11 QEYVHSIYDKIA--THFSATRAAPWPMVRQFLDSQ------PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLG 79 (293)
T ss_pred HHHhHHHHHHhh--hhccccccCccHHHHHHHhcc------CCcceeeecccCCcccCcCC---Ccceeeecchhhhhcc
Confidence 456556666552 223 2455666655554443 34778999999999876421 1124899999998887
Q ss_pred HHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChhH-----HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 106 DMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHKL-----GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 106 ~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~-----~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
-+++.. . .....+|+.+.+ .+||+.++....|+. ...+++++.|+|+|||..++..++.
T Consensus 80 ~ak~~~----~-~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 80 GAKRSG----G-DNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred ccccCC----C-ceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 654432 1 167889999988 899999998766654 8899999999999999988777653
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.001 Score=74.10 Aligned_cols=127 Identities=9% Similarity=0.133 Sum_probs=82.2
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 610 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~ 610 (759)
.++|.++.|.|+++..|.... .+|++||+++.+++.|++......-++++++.+|+.++++........
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~--------- 276 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREF--------- 276 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccc---------
Confidence 479999999999999888775 489999999999999999873322247999999999998764210000
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHHH
Q 004354 611 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVIS 690 (759)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 690 (759)
.+.. .......+||+||+|.-- .| +..+.++.+.+ +++++.+-. ....+.+. +.
T Consensus 277 -------~~~~-~~~~~~~~~D~v~lDPPR----~G--------~~~~~l~~l~~---~~~ivyvSC--~p~tlarD-l~ 330 (362)
T PRK05031 277 -------NRLK-GIDLKSYNFSTIFVDPPR----AG--------LDDETLKLVQA---YERILYISC--NPETLCEN-LE 330 (362)
T ss_pred -------cccc-cccccCCCCCEEEECCCC----CC--------CcHHHHHHHHc---cCCEEEEEe--CHHHHHHH-HH
Confidence 0000 000002369999996521 12 34677777765 678777554 33444444 34
Q ss_pred HHHH
Q 004354 691 RMKM 694 (759)
Q Consensus 691 ~l~~ 694 (759)
.|.+
T Consensus 331 ~L~~ 334 (362)
T PRK05031 331 TLSQ 334 (362)
T ss_pred HHcC
Confidence 4443
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0011 Score=72.16 Aligned_cols=59 Identities=20% Similarity=0.088 Sum_probs=47.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-----CCCCeEEEEccHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----QDKSLKVHITDGI 589 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-----~~~rl~v~i~Da~ 589 (759)
...+||.||+|+|.++..|... ..+|++||+++.|++.|++.+... ...+++++.+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 3569999999999999888875 459999999999999999886321 1346788888853
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0023 Score=64.97 Aligned_cols=94 Identities=19% Similarity=0.186 Sum_probs=73.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----------Cccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFH--GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------GGLD 133 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~--~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----------gtfD 133 (759)
.++..|+||||-.|..+..+++.... .|+|+|+.|- ...+++.++++|+++-. .+.|
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM----------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc----------ccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 56899999999999999998887332 3999999882 23467999999999876 4579
Q ss_pred EEEeCCCC---------hh----HHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 134 ALMEPELG---------HK----LGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 134 ~Ii~~~~~---------~~----~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+|++.... |. .....+.-+..+|+|||.|++-.|-..
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 99985422 11 156667777889999999999888544
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00089 Score=65.83 Aligned_cols=130 Identities=20% Similarity=0.343 Sum_probs=83.5
Q ss_pred CCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+|.|.|.+..-|++- |+. .++.||..+..+++|+.-- ++ ++.+++.+.|-.+- .
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~--~n~I~f~q~DI~~~--~---------- 131 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGF--SNEIRFQQLDITDP--D---------- 131 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCC--CcceeEEEeeccCC--c----------
Confidence 3349999999999887666654 433 6999999999999997543 55 34588888885542 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEE----EcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILI----IDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii----~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
....+||+|+ .|+-+--+.. |...+ .-++..+.+.|+|||+|++--
T Consensus 132 ---------------------~~~~qfdlvlDKGT~DAisLs~d~----~~~r~--~~Y~d~v~~ll~~~gifvItS--- 181 (227)
T KOG1271|consen 132 ---------------------FLSGQFDLVLDKGTLDAISLSPDG----PVGRL--VVYLDSVEKLLSPGGIFVITS--- 181 (227)
T ss_pred ---------------------ccccceeEEeecCceeeeecCCCC----cccce--eeehhhHhhccCCCcEEEEEe---
Confidence 1135677776 2332110000 11111 347888999999999999764
Q ss_pred ChhHHHHHHHHHHHh-cCceEEEe
Q 004354 681 SQATKDMVISRMKMV-FNHLFCLQ 703 (759)
Q Consensus 681 ~~~~~~~v~~~l~~v-F~~v~~~~ 703 (759)
+....+.+++.+... |..++.++
T Consensus 182 CN~T~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 182 CNFTKDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred cCccHHHHHHHHhcCCeEEEEeec
Confidence 444556667766655 55444444
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00012 Score=74.29 Aligned_cols=105 Identities=18% Similarity=0.320 Sum_probs=81.9
Q ss_pred cCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 527 VGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 527 ~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
.+.-.++|.||+|+|.+.--|+..- .+++.|||+..|++.|.+.-.+ =++.++|+..|++...
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~Y-----D~L~~Aea~~Fl~~~~---------- 185 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLY-----DTLYVAEAVLFLEDLT---------- 185 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccch-----HHHHHHHHHHHhhhcc----------
Confidence 3446799999999999988888874 4899999999999999988665 2567889999987544
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEE-cCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~-D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
+.+||+|.. ||.. ..+.+ +.++-.+...|+|||+|++.+-.-
T Consensus 186 ---------------------~er~DLi~AaDVl~--YlG~L---------e~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 186 ---------------------QERFDLIVAADVLP--YLGAL---------EGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred ---------------------CCcccchhhhhHHH--hhcch---------hhHHHHHHHhcCCCceEEEEeccc
Confidence 478999974 3322 11222 668889999999999999887543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00057 Score=68.37 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=51.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~ 596 (759)
...|||.||+|.|.|..+|.+. .++...+||+|++-+..|.+. .+.|+.+|.-+-|....
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~ 72 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFP 72 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCC
Confidence 3479999999999999999997 478999999999988888655 37899999999887765
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00044 Score=72.65 Aligned_cols=58 Identities=28% Similarity=0.357 Sum_probs=52.9
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
...||.||-|.|+|+..|.+.. .+|++||||+.++.+-++.+.. .++++|+.+|++++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~ 88 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKF 88 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcC
Confidence 5789999999999999999985 4799999999999999999973 57899999999987
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0012 Score=65.52 Aligned_cols=92 Identities=20% Similarity=0.270 Sum_probs=68.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
.+.|+.+|.|+|.|..-..-.-+ .+|.+||+||+.+++|++.-+- ...+++++++|..++
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~------------------ 105 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF------------------ 105 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc------------------
Confidence 35799999999998866665533 4999999999999999988742 245799999998776
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHcc
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDAL 667 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L 667 (759)
..++|.+|.+. + . |.. ..+ .+..||+.+.+.-
T Consensus 106 ------------------~~~~dtvimNP--P--F-G~~--~rh-aDr~Fl~~Ale~s 137 (198)
T COG2263 106 ------------------RGKFDTVIMNP--P--F-GSQ--RRH-ADRPFLLKALEIS 137 (198)
T ss_pred ------------------CCccceEEECC--C--C-ccc--ccc-CCHHHHHHHHHhh
Confidence 26788888832 2 1 111 223 5788998887765
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=68.50 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=47.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEcc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITD 587 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~D 587 (759)
...+||.||+|.|.++..|.... ..++++|+++.+++.|++.+.-. ..+++.++.+|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 45699999999999988887764 46999999999999999987422 22589999998
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00051 Score=70.48 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=72.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+-++.+|.|.|-.+..+..++ -+|.++|++++|+++|++++... .+-..+..-.|.++++.
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g-------------- 96 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG-------------- 96 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC--------------
Confidence 33479999999998888888884 48999999999999999998542 11122222233333321
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCC-CChHHHHHHHHHccCcCc-EEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-FVEGSFLLTVKDALSEQG-LFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~-f~~~~fl~~~~~~L~~~G-ilv~N~~~ 679 (759)
...+.|+|++ .+ ..| |--++|++.+++.|+++| ++++....
T Consensus 97 -------------------~e~SVDlI~~----Aq--------a~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 97 -------------------GEESVDLITA----AQ--------AVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred -------------------CCcceeeehh----hh--------hHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 1367899987 21 122 345889999999998866 88876655
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0023 Score=66.67 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=89.6
Q ss_pred HHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC
Q 004354 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ 129 (759)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~ 129 (759)
..++..++.. .|+.+|||-|.|+|.++..+++. +. .+++..|+-+.-.+.|++.++.. ..++++.+-|+....
T Consensus 94 ia~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 94 IAMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred HHHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 3455666665 79999999999999999999886 32 36999999988888888877554 357899999987765
Q ss_pred -----CcccEEEeCCCChhHHHHHHHHHHHhcccCc-EEEEEEcCchhhhhhhccccCCCc
Q 004354 130 -----GGLDALMEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLAESHVLGLLFPKFRFGW 184 (759)
Q Consensus 130 -----gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG-~liiit~~~~~~~~~l~~~~~~~w 184 (759)
+.+|+|+..-..+|.. +-.+..+||.+| ++++++..-+.+.+........+|
T Consensus 171 F~~ks~~aDaVFLDlPaPw~A---iPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf 228 (314)
T KOG2915|consen 171 FLIKSLKADAVFLDLPAPWEA---IPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGF 228 (314)
T ss_pred ccccccccceEEEcCCChhhh---hhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCC
Confidence 7899999976555543 333344777655 788887665544444333334466
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0015 Score=78.53 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=77.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-------C-----CCcEEEEEcCHH---HHHHH-----------Hhhc--------
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-------P-----FVGIEAVELDLT---MLNLA-----------EDYF-------- 573 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-------p-----~~~i~~VEiDp~---v~~vA-----------~~~F-------- 573 (759)
....+|+.+|.|+|.....+...+ | .+++..+|.+|. -+.-+ +...
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 445899999999995433333222 3 358999998762 22111 1110
Q ss_pred CCC----CCC--CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCC
Q 004354 574 GFT----QDK--SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 647 (759)
Q Consensus 574 gl~----~~~--rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~ 647 (759)
|+. ++. ++++++||+.+.+.+.. .++|+|++|.|++..
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~--------------------------------~~~d~~~lD~FsP~~---- 179 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLD--------------------------------ARADAWFLDGFAPAK---- 179 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhcc--------------------------------ccccEEEeCCCCCcc----
Confidence 210 122 56789999999998764 469999999999853
Q ss_pred CcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 648 TCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 648 scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
.+++.+.++|..+.++++|+|.|+
T Consensus 180 ---np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 180 ---NPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ---ChhhccHHHHHHHHHHhCCCCEEE
Confidence 688999999999999999999998
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0017 Score=75.88 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=51.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhC--------C-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccC-----C---
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG--------F-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM-----Q--- 129 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G--------~-~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~-----~--- 129 (759)
...+|||.|||+|.+...+++.. . .+++|+|+++.++..++.++.... ..+...+.|.... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 34689999999999998887642 1 358999999999998887764322 2344454443221 1
Q ss_pred CcccEEEeCC
Q 004354 130 GGLDALMEPE 139 (759)
Q Consensus 130 gtfD~Ii~~~ 139 (759)
+.||+|++++
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 6899999976
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.002 Score=65.95 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=74.3
Q ss_pred CCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC---------CcccE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ---------GGLDA 134 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~---------gtfD~ 134 (759)
...+.||||.=||.-+..++..- -.+|+++|+++...+.+.+..+.. ...|+++++++.+.- ++||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 45799999987777776666541 125999999999999886655333 357999999876542 89999
Q ss_pred EEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 135 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 135 Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
++....-. ....++.++.+++|+||.+++--
T Consensus 153 aFvDadK~-nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFVDADKD-NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEccchH-HHHHHHHHHHhhcccccEEEEec
Confidence 99975422 23489999999999999988653
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0038 Score=61.57 Aligned_cols=123 Identities=20% Similarity=0.323 Sum_probs=87.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.+.=+|.||.|.|....||.... |+....+.||+|...++.++---. +..++.++..|-..-++.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-n~~~~~~V~tdl~~~l~~------------- 108 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-NRVHIDVVRTDLLSGLRN------------- 108 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-cCCccceeehhHHhhhcc-------------
Confidence 46679999999999999999876 667888999999999986655432 345688999987666654
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-----------------ChHHHHHHHHHccCcC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----------------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-----------------~~~~fl~~~~~~L~~~ 670 (759)
++.|++++.- + .+..++... +...++..+..+|+|.
T Consensus 109 ---------------------~~VDvLvfNP--P----YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~ 161 (209)
T KOG3191|consen 109 ---------------------ESVDVLVFNP--P----YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPR 161 (209)
T ss_pred ---------------------CCccEEEECC--C----cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcC
Confidence 4578887722 1 011111111 2567888899999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHH
Q 004354 671 GLFIVNLVSRSQATKDMVISRMKM 694 (759)
Q Consensus 671 Gilv~N~~~~~~~~~~~v~~~l~~ 694 (759)
|+|-++...++.. .+++..++.
T Consensus 162 Gv~Ylv~~~~N~p--~ei~k~l~~ 183 (209)
T KOG3191|consen 162 GVFYLVALRANKP--KEILKILEK 183 (209)
T ss_pred ceEEeeehhhcCH--HHHHHHHhh
Confidence 9999998776544 345665543
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0021 Score=60.38 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=63.7
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChH
Q 004354 578 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 657 (759)
Q Consensus 578 ~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~ 657 (759)
.-++++++||+.+.+.+.. ..+|+|++|.+++.. .+++.+.
T Consensus 30 ~v~L~L~~gDa~~~l~~l~--------------------------------~~~Da~ylDgFsP~~-------nPelWs~ 70 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQLD--------------------------------ARFDAWYLDGFSPAK-------NPELWSE 70 (124)
T ss_dssp TEEEEEEES-HHHHHHHB---------------------------------T-EEEEEE-SS-TTT-------SGGGSSH
T ss_pred CEEEEEEEcHHHHHHHhCc--------------------------------ccCCEEEecCCCCcC-------CcccCCH
Confidence 3468999999999999875 679999999999853 6789999
Q ss_pred HHHHHHHHccCcCcEEEEEecCCChhHHHHHHHHHHHhcCceEEEeecCCccEEEEEec
Q 004354 658 SFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLS 716 (759)
Q Consensus 658 ~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~ 716 (759)
++++.+.++++|||+|+ ..+.... |-..|.++==.|...+-...-.+++.|.+
T Consensus 71 e~~~~l~~~~~~~~~l~--Tys~a~~----Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLA--TYSSAGA----VRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp HHHHHHHHHEEEEEEEE--ES--BHH----HHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred HHHHHHHHHhCCCcEEE--EeechHH----HHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 99999999999999988 3334444 33444444324555554445566776654
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=66.26 Aligned_cols=101 Identities=15% Similarity=0.206 Sum_probs=75.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC--CCcEEEEEcCHHHHHHHHhhcCC----------CCCCCeEEEEccHHHHHHhhc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP--FVGIEAVELDLTMLNLAEDYFGF----------TQDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p--~~~i~~VEiDp~v~~vA~~~Fgl----------~~~~rl~v~i~Da~~~l~~~~ 596 (759)
...+.|.||.|+|.|+........ +...+.||.=|++++.+++.... -...++.++++||+.--.+
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-- 159 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-- 159 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc--
Confidence 457899999999988776665542 33449999999999999987622 1347899999999875222
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 597 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+||.|.+-+..+ +..+.+-+.|+++|-+++-
T Consensus 160 -------------------------------~a~YDaIhvGAaa~----------------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 160 -------------------------------QAPYDAIHVGAAAS----------------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred -------------------------------cCCcceEEEccCcc----------------ccHHHHHHhhccCCeEEEe
Confidence 46899999954333 3456677789999988877
Q ss_pred ec
Q 004354 677 LV 678 (759)
Q Consensus 677 ~~ 678 (759)
+.
T Consensus 193 ~~ 194 (237)
T KOG1661|consen 193 VG 194 (237)
T ss_pred ec
Confidence 65
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=6.9e-05 Score=74.61 Aligned_cols=92 Identities=16% Similarity=0.295 Sum_probs=67.5
Q ss_pred CCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCCh--hHHH
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGH--KLGN 146 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~--~~~~ 146 (759)
+.++||+|+|.|..+..++.. +.+|++.+.|..|..+.+++.-.-...++|.+.| -.||+|.|.+... ...-
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~-----~k~dli~clNlLDRc~~p~ 186 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTD-----VKLDLILCLNLLDRCFDPF 186 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcC-----ceeehHHHHHHHHhhcChH
Confidence 468999999999999999876 7779999999988776655431111223333333 3599999976432 2378
Q ss_pred HHHHHHHHhccc-CcEEEEEE
Q 004354 147 QYLSEVKRLLKS-GGKFVCLT 166 (759)
Q Consensus 147 ~~l~ei~rvLkp-GG~liiit 166 (759)
++++.++.+|+| +|+.|+.-
T Consensus 187 kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 187 KLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHHHHhccCCCcEEEEE
Confidence 999999999999 88877654
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0028 Score=64.84 Aligned_cols=140 Identities=21% Similarity=0.237 Sum_probs=95.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCH----HHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDL----TMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATD 602 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp----~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~ 602 (759)
....+||-||...|+..+++..... .-.|-+||..| ..+++|++.- ++--+++||+.--+-..
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~------NIiPIl~DAr~P~~Y~~------ 139 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP------NIIPILEDARHPEKYRM------ 139 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST------TEEEEES-TTSGGGGTT------
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC------ceeeeeccCCChHHhhc------
Confidence 3457999999999999999999875 66999999999 7788898874 46778999885422111
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC--
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR-- 680 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~-- 680 (759)
--..+|+|+.|+..++. .+=+..+++..|++||.+++-+-++
T Consensus 140 ------------------------lv~~VDvI~~DVaQp~Q------------a~I~~~Na~~fLk~gG~~~i~iKa~si 183 (229)
T PF01269_consen 140 ------------------------LVEMVDVIFQDVAQPDQ------------ARIAALNARHFLKPGGHLIISIKARSI 183 (229)
T ss_dssp ------------------------TS--EEEEEEE-SSTTH------------HHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred ------------------------ccccccEEEecCCChHH------------HHHHHHHHHhhccCCcEEEEEEecCcc
Confidence 12579999999976652 2557888889999999887655332
Q ss_pred -----ChhHHHHHHHHHHHh-cCceEEEeec--CCccEEEEEe
Q 004354 681 -----SQATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGL 715 (759)
Q Consensus 681 -----~~~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~Vl~a~ 715 (759)
........+++|++. |.-+-.+..+ +..+.+++|.
T Consensus 184 D~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 184 DSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp -SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEE
Confidence 234456668888874 7654444443 3445555553
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0061 Score=64.90 Aligned_cols=125 Identities=16% Similarity=0.251 Sum_probs=74.4
Q ss_pred ccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHH-h-CC-CeEEEEeCCHHHHHHHHHHhcc---CCC
Q 004354 43 SFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD-A-GF-HGITNVDFSKVVISDMLRRNVR---DRS 116 (759)
Q Consensus 43 ~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~-~-G~-~~VtgIDiS~~~I~~a~~r~~~---~~~ 116 (759)
.|.+|..|..+.+.=...+.......+.+|+=||||.=-++.-+.. . |. ..|+++|+++.+++.+++-... -..
T Consensus 95 ~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~ 174 (276)
T PF03059_consen 95 SFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK 174 (276)
T ss_dssp TSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S
T ss_pred cCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC
Confidence 3446666666554433444331112345999999998777755543 2 32 3599999999999998876542 246
Q ss_pred CcEEEEeecccCC---CcccEEEeCCCC---hhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 117 DMRWRVMDMTSMQ---GGLDALMEPELG---HKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 117 ~i~f~~~D~~~~~---gtfD~Ii~~~~~---~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
++.|+++|..+.. ..||+|+....- .....+++.++.+.++||..+++-+.
T Consensus 175 ~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 175 RMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp SEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred CeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 7999999998765 789999986522 22378999999999999999888754
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0021 Score=64.04 Aligned_cols=105 Identities=13% Similarity=0.174 Sum_probs=79.2
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCC--ChhHH
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPEL--GHKLG 145 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~--~~~~~ 145 (759)
.+.+|||+|.|+|..+..-+..|...|+..|+.|-.+...+-+...++..+.+...|....+..||+++..+. .+...
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~~~a 158 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNHTEA 158 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCchHH
Confidence 4689999999999999999999998899999998877766656566777899999998874589999999874 33446
Q ss_pred HHHHHHHHHhcccCc-EEEEEEcCchhhh
Q 004354 146 NQYLSEVKRLLKSGG-KFVCLTLAESHVL 173 (759)
Q Consensus 146 ~~~l~ei~rvLkpGG-~liiit~~~~~~~ 173 (759)
.+++. +.+.|+..| .+++.+.+.++..
T Consensus 159 ~~l~~-~~~~l~~~g~~vlvgdp~R~~lp 186 (218)
T COG3897 159 DRLIP-WKDRLAEAGAAVLVGDPGRAYLP 186 (218)
T ss_pred HHHHH-HHHHHHhCCCEEEEeCCCCCCCc
Confidence 67777 555555444 4555555444443
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00055 Score=75.69 Aligned_cols=101 Identities=19% Similarity=0.192 Sum_probs=81.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC---CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ---GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~---gtfD~Ii~~~~~ 141 (759)
.+...++|+|||.|..+.++...+..+++|+|.++.-+..+....... .....++..|+.+++ ++||.+.+.+..
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 456689999999999999998876667999999998877665544222 234566888998887 899999997754
Q ss_pred hhH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 142 HKL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 142 ~~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.+. ....++|+.|+++|||++++..+
T Consensus 189 ~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 189 CHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred ccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 433 88999999999999999998764
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0043 Score=62.08 Aligned_cols=109 Identities=15% Similarity=0.205 Sum_probs=78.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...++|.+=.|.|+|..-..... -..++.||.|...+.+.+++. .+....+.+++..|+..+++....
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~---------- 111 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT---------- 111 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC----------
Confidence 34799999999999986555552 349999999999999999997 333368899999999999888651
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh-HHHHHH--HHHccCcCcEEEEEec
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-GSFLLT--VKDALSEQGLFIVNLV 678 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~-~~fl~~--~~~~L~~~Gilv~N~~ 678 (759)
...||+|++|.-= ...++. ..-+.. -...|+|+|++++---
T Consensus 112 --------------------~~~FDlVflDPPy----------~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 112 --------------------REPFDLVFLDPPY----------AKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred --------------------CCcccEEEeCCCC----------ccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 2359999996411 122342 222222 2456999999997653
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00022 Score=80.33 Aligned_cols=93 Identities=22% Similarity=0.256 Sum_probs=61.1
Q ss_pred CeEEEECCCcchhHHHHHHhCCCeE--EEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCC-Chh
Q 004354 70 PQILVPGCGNSRLSEHLYDAGFHGI--TNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPEL-GHK 143 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G~~~V--tgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~-~~~ 143 (759)
..+||+|||+|.++.+|.+++..-+ .--|..+..++.|.+|- .|.+ +-.+--..++ ++||+|-|..- ..|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG---vpa~-~~~~~s~rLPfp~~~fDmvHcsrc~i~W 194 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG---VPAM-IGVLGSQRLPFPSNAFDMVHCSRCLIPW 194 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC---cchh-hhhhccccccCCccchhhhhcccccccc
Confidence 4699999999999999999875411 11255556666665552 1211 1111123344 89999998652 222
Q ss_pred H--HHHHHHHHHHhcccCcEEEEEE
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liiit 166 (759)
. -..+|-++.|+|+|||+|+...
T Consensus 195 ~~~~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 195 HPNDGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred hhcccceeehhhhhhccCceEEecC
Confidence 2 3458899999999999988664
|
; GO: 0008168 methyltransferase activity |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00092 Score=66.70 Aligned_cols=142 Identities=20% Similarity=0.242 Sum_probs=87.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccH-----HHHHHhhcccCcc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG-----IKFVREMKSSSAT 601 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da-----~~~l~~~~~~~~~ 601 (759)
+...+||.||.+.|+.+.++.+.. +..+|.+||+-+. .+.+.+..+.+|. .+.+.+..
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~----- 85 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLL----- 85 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSH-----
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhc-----
Confidence 466899999999999999999987 5679999999877 1113344444443 22222211
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC----ChHHHHHHHHHccCcCcEEEEEe
Q 004354 602 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f----~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
.....++|+|+.|+-..- .|.... .++ +....+..+...|++||.||+-+
T Consensus 86 -----------------------~~~~~~~dlv~~D~~~~~--~g~~~~-d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 86 -----------------------PESGEKFDLVLSDMAPNV--SGDRNI-DEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp -----------------------GTTTCSESEEEE---------SSHHS-SHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred -----------------------cccccCcceeccccccCC--CCchhh-HHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 011368999999982221 111000 011 12334456667799999999988
Q ss_pred cCCChhHHHHHHHHHHHhcCceEEEeecC---CccEEEE
Q 004354 678 VSRSQATKDMVISRMKMVFNHLFCLQLEE---DVNLVLF 713 (759)
Q Consensus 678 ~~~~~~~~~~v~~~l~~vF~~v~~~~~~~---~~N~Vl~ 713 (759)
...... . .++..++..|..+..++... ..|++.+
T Consensus 140 ~~~~~~-~-~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Yl 176 (181)
T PF01728_consen 140 FKGPEI-E-ELIYLLKRCFSKVKIVKPPSSRSESSEEYL 176 (181)
T ss_dssp SSSTTS-H-HHHHHHHHHHHHEEEEE-TTSBTTCBEEEE
T ss_pred ccCccH-H-HHHHHHHhCCeEEEEEECcCCCCCccEEEE
Confidence 765444 3 78999999999999888643 4566544
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0062 Score=58.19 Aligned_cols=114 Identities=12% Similarity=0.148 Sum_probs=76.0
Q ss_pred eEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-----CcccEEEeCC-----CC------hhHHHHHHHHHHH
Q 004354 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-----GGLDALMEPE-----LG------HKLGNQYLSEVKR 154 (759)
Q Consensus 93 ~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-----gtfD~Ii~~~-----~~------~~~~~~~l~ei~r 154 (759)
+|+|.||-+.+|+..++++.... .++++++.+-.++. +..|+++.+- .. ...-...++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 48999999999999999986543 36899888877776 3899999742 11 1226678889999
Q ss_pred hcccCcEEEEEEcCc-h------hhhhhhcccc-CCCceEEEEEeCCCCCCCCCceEEEEEEEe
Q 004354 155 LLKSGGKFVCLTLAE-S------HVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADK 210 (759)
Q Consensus 155 vLkpGG~liiit~~~-~------~~~~~l~~~~-~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K 210 (759)
+|+|||.++++.|.. + .....++... ...|.+..+...+ ...-|+++++.+|
T Consensus 81 lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N----~~~~pp~l~~ieK 140 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN----QKNNPPLLVIIEK 140 (140)
T ss_dssp HEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-----SS---EEEEEEE
T ss_pred hhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC----CCCCCCEEEEEEC
Confidence 999999999998852 2 2223333333 3489998888876 3456888888765
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0011 Score=70.85 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=51.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
...+||.||.|.|.++..|....+ +|++||+|+.+++.+++.+. +++++++.+|+.++
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~ 99 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKV 99 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcC
Confidence 446899999999999999998854 89999999999999999874 36899999998875
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0007 Score=66.46 Aligned_cols=68 Identities=10% Similarity=0.150 Sum_probs=51.3
Q ss_pred eEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC-----Cc-ccEEEeCC
Q 004354 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-----GG-LDALMEPE 139 (759)
Q Consensus 71 ~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~-----gt-fD~Ii~~~ 139 (759)
.|+|+.||.|..+.++++. +.+|++||+++.-++.++.++.-- ..+++|+++|..+.. .. +|+|++++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 6999999999999999988 667999999999999888876544 347999999998765 22 79999754
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0028 Score=62.22 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=57.0
Q ss_pred EEEEcCHHHHHHHHhhcCCC---CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeE
Q 004354 557 EAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDI 633 (759)
Q Consensus 557 ~~VEiDp~v~~vA~~~Fgl~---~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~ 633 (759)
++||+++.|+++|++..... ..++++++++|+.+. . ..+..||+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l----p-----------------------------~~~~~fD~ 47 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL----P-----------------------------FDDCEFDA 47 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC----C-----------------------------CCCCCeeE
Confidence 47999999999998765321 135799999998764 1 11367999
Q ss_pred EEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 634 LIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 634 Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
|++-. ....+. --..+|+.+++.|+|||.|++--+...
T Consensus 48 v~~~~----~l~~~~------d~~~~l~ei~rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 48 VTMGY----GLRNVV------DRLRAMKEMYRVLKPGSRVSILDFNKS 85 (160)
T ss_pred EEecc----hhhcCC------CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 99721 111111 126799999999999999887655543
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0026 Score=68.51 Aligned_cols=65 Identities=12% Similarity=-0.019 Sum_probs=56.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~ 596 (759)
...++..++|+|.-+..+...+| ..+|.++|.||.+++.|++.+. +.+|++++++|..++.....
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~--~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK--PFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc--cCCcEEEEeCCHHHHHHHHH
Confidence 35899999999999999998886 6799999999999999998763 14689999999999876554
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0021 Score=65.03 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=44.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
...+||.||.|.|.+...+.... ...+++||+++.+++.|++. +++++.+|+.+.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~ 67 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEG 67 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhc
Confidence 34689999999999988887663 45789999999999999752 468888887654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0096 Score=64.03 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=114.2
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CC
Q 004354 500 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GF 575 (759)
Q Consensus 500 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl 575 (759)
+++...-...|+.+..|.+ ....+||.+..|-|+=+..|...++ ...|+++|+++.-+...+.++ |.
T Consensus 65 G~~~vQd~sS~l~~~~L~~---------~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~ 135 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALDP---------QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV 135 (283)
T ss_dssp TSEEEHHHHHHHHHHHHTT---------TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CcEEecccccccccccccc---------cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC
Confidence 3443334455555554432 3446799999999988888888886 569999999999998888765 54
Q ss_pred CCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCC--
Q 004354 576 TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-- 653 (759)
Q Consensus 576 ~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~-- 653 (759)
..+.++..|+..+..... ...||.|++|+-.+.. +-+.-.|..
T Consensus 136 ---~~v~~~~~D~~~~~~~~~-------------------------------~~~fd~VlvDaPCSg~-G~i~r~p~~~~ 180 (283)
T PF01189_consen 136 ---FNVIVINADARKLDPKKP-------------------------------ESKFDRVLVDAPCSGL-GTIRRNPDIKW 180 (283)
T ss_dssp ---SSEEEEESHHHHHHHHHH-------------------------------TTTEEEEEEECSCCCG-GGTTTCTTHHH
T ss_pred ---ceEEEEeecccccccccc-------------------------------ccccchhhcCCCccch-hhhhhccchhh
Confidence 568888899999976654 2469999999966532 111111211
Q ss_pred -----------CChHHHHHHHHHcc----CcCcEEEEEecCCChhHHHHHHHHHHHhcCceEEEe
Q 004354 654 -----------FVEGSFLLTVKDAL----SEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQ 703 (759)
Q Consensus 654 -----------f~~~~fl~~~~~~L----~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~ 703 (759)
.++.+.|+.+.+.| +|||.+|.-.-+-..+.-+.+++.+-+-++......
T Consensus 181 ~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 181 RRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVP 245 (283)
T ss_dssp HE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEEC
T ss_pred cccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 23778899999999 999999998866666666778888777777655444
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.004 Score=62.00 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=72.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC---CCCCeEEEEccHHHHH-HhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFV-REMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~---~~~rl~v~i~Da~~~l-~~~~~~~~~~~ 603 (759)
...++||.||.|.|...+.+....+..+|++-|+++ +++..+...... ...++++..-|=-+-+ ....
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~------- 115 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL------- 115 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH-------
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc-------
Confidence 566899999999999988888886677999999999 888888876432 2456666664311101 1111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEE-cCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCCh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 682 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~-D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~ 682 (759)
...+||+||. |+--. .-.-+.++..++.+|+++|.+++-...|..
T Consensus 116 -----------------------~~~~~D~IlasDv~Y~-----------~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~ 161 (173)
T PF10294_consen 116 -----------------------EPHSFDVILASDVLYD-----------EELFEPLVRTLKRLLKPNGKVLLAYKRRRK 161 (173)
T ss_dssp -----------------------S-SSBSEEEEES--S------------GGGHHHHHHHHHHHBTT-TTEEEEEE-S-T
T ss_pred -----------------------ccccCCEEEEecccch-----------HHHHHHHHHHHHHHhCCCCEEEEEeCEecH
Confidence 1257999996 43111 123378999999999999886666655644
Q ss_pred hHHHHHHHHHHH
Q 004354 683 ATKDMVISRMKM 694 (759)
Q Consensus 683 ~~~~~v~~~l~~ 694 (759)
.. ..+++++++
T Consensus 162 ~~-~~F~~~~~k 172 (173)
T PF10294_consen 162 SE-QEFFDRLKK 172 (173)
T ss_dssp GG-CHHHHHH--
T ss_pred HH-HHHHHHhhh
Confidence 33 345666654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0074 Score=66.99 Aligned_cols=103 Identities=19% Similarity=0.179 Sum_probs=80.8
Q ss_pred CCCCCeEEEECCCcchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC------CcccEE
Q 004354 66 SSPPPQILVPGCGNSRLSEHLYDAGF---HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ------GGLDAL 135 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~L~~~G~---~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~------gtfD~I 135 (759)
+.++.+|||+.++.|.=+.+++...- ..|+++|+|+.=++.+++++...+ .++...+.|...++ +.||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 37889999999999999999988632 236999999999998888876544 45678888877654 359999
Q ss_pred EeCC----C-------------C-------hhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 136 MEPE----L-------------G-------HKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 136 i~~~----~-------------~-------~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++.. . . ......+|..+.++|||||+++..|.+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 9742 0 0 112678899999999999999999876
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0033 Score=65.64 Aligned_cols=61 Identities=28% Similarity=0.267 Sum_probs=51.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeEEEEccHHH
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIK 590 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-gl~~~~rl~v~i~Da~~ 590 (759)
..+--||.||-|+|.|+.-|.+. ..+|.+||+||.|+..-.+.+ |.+....++|+++|.+.
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 55678999999999999988887 369999999999987766666 87777899999999554
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.012 Score=65.21 Aligned_cols=137 Identities=14% Similarity=0.192 Sum_probs=102.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC--CcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPF--VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATD 602 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~--~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~ 602 (759)
....+||.+-.+-|+=+..|.+.+++ ..|+++|+|+.=++..+... |+ .++.++..|+..+.....
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~---~nv~~~~~d~~~~~~~~~------ 225 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV---RNVIVVNKDARRLAELLP------ 225 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC---CceEEEeccccccccccc------
Confidence 44579999999999888888888875 35599999999888888775 65 338899999887755433
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcC-CCC-------------CChHHHHHHHHHccC
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AAD-------------FVEGSFLLTVKDALS 668 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scP-p~~-------------f~~~~fl~~~~~~L~ 668 (759)
...+||.|++|+-.+. .|+--- |.. =++.++|..+.+.|+
T Consensus 226 ------------------------~~~~fD~iLlDaPCSg--~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk 279 (355)
T COG0144 226 ------------------------GGEKFDRILLDAPCSG--TGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK 279 (355)
T ss_pred ------------------------ccCcCcEEEECCCCCC--CcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1236999999996653 232111 111 137789999999999
Q ss_pred cCcEEEEEecCCChhHHHHHHHHHHHhcCce
Q 004354 669 EQGLFIVNLVSRSQATKDMVISRMKMVFNHL 699 (759)
Q Consensus 669 ~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v 699 (759)
|||.||+-..+...+.-+.++..+.+-.+.+
T Consensus 280 ~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~ 310 (355)
T COG0144 280 PGGVLVYSTCSLTPEENEEVVERFLERHPDF 310 (355)
T ss_pred CCCEEEEEccCCchhcCHHHHHHHHHhCCCc
Confidence 9999999987877777778887776666543
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0058 Score=65.43 Aligned_cols=121 Identities=14% Similarity=0.088 Sum_probs=75.9
Q ss_pred cchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEE-
Q 004354 48 AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRV- 122 (759)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~--~i~f~~- 122 (759)
..|..+...+.+.-.....-.+.+|||+|||.|.-+..+.+. ....++++|.|+.|++.++........ ...+..
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~ 92 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRV 92 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhh
Confidence 345555555555543322235679999999999877666553 355799999999999988776533211 111111
Q ss_pred --eecccCCCcccEEEeCCCC----hhHHHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 123 --MDMTSMQGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 123 --~D~~~~~gtfD~Ii~~~~~----~~~~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
.+.... ...|+|++.... ......+++.+.+.+.+ .++++..+.+.
T Consensus 93 ~~~~~~~~-~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 93 LYRDFLPF-PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hhcccccC-CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 111111 345999986522 23367777777776655 99999888763
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0034 Score=65.10 Aligned_cols=135 Identities=9% Similarity=0.089 Sum_probs=86.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeEEEEccHHHHHHhhc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~------------~~~rl~v~i~Da~~~l~~~~ 596 (759)
...+|||.|+|-|--..+|..+ +..|++||++|.-++.+.+..++. ...+++++++|..++=...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~- 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA- 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-
Confidence 3469999999999999999987 358999999999999987644332 2357888888877651100
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 597 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
....+||+|.- . .....+ |++ ....+.+.+.++|+|||.+++-
T Consensus 120 -----------------------------~~~~~fD~VyD-r---a~~~Al---pp~-~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 120 -----------------------------NNLPVFDIWYD-R---GAYIAL---PND-LRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred -----------------------------cccCCcCeeee-e---hhHhcC---CHH-HHHHHHHHHHHHhCCCcEEEEE
Confidence 01246888653 1 111222 332 3577999999999999955543
Q ss_pred ecCCCh----hHHHHHHHHHHHhcCceEEEe
Q 004354 677 LVSRSQ----ATKDMVISRMKMVFNHLFCLQ 703 (759)
Q Consensus 677 ~~~~~~----~~~~~v~~~l~~vF~~v~~~~ 703 (759)
....+. ....--...+.+.|...+.+.
T Consensus 163 ~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~ 193 (226)
T PRK13256 163 VMEHDKKSQTPPYSVTQAELIKNFSAKIKFE 193 (226)
T ss_pred EEecCCCCCCCCCcCCHHHHHHhccCCceEE
Confidence 332111 011111356777776654444
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.01 Score=62.08 Aligned_cols=136 Identities=15% Similarity=0.153 Sum_probs=95.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
.....|+.-|.|.|++..++.... |.-++...|.+..-.+-|++.| |. ++.+.+.+.|--. .
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi--~~~vt~~hrDVc~----~-------- 169 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI--GDNVTVTHRDVCG----S-------- 169 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC--CcceEEEEeeccc----C--------
Confidence 344689999999999998888776 6679999999999999999999 64 5678998887322 0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
.|+ .....+|+|++|+-++. +.+-.+.++|+.+|.-++|+ +++-+
T Consensus 170 --GF~-----------------~ks~~aDaVFLDlPaPw---------------~AiPha~~~lk~~g~r~csF-SPCIE 214 (314)
T KOG2915|consen 170 --GFL-----------------IKSLKADAVFLDLPAPW---------------EAIPHAAKILKDEGGRLCSF-SPCIE 214 (314)
T ss_pred --Ccc-----------------ccccccceEEEcCCChh---------------hhhhhhHHHhhhcCceEEec-cHHHH
Confidence 111 11367999999996653 34445556899988888887 44544
Q ss_pred HHHHHHHHHHH-hcCceEEEeecC-CccEEE
Q 004354 684 TKDMVISRMKM-VFNHLFCLQLEE-DVNLVL 712 (759)
Q Consensus 684 ~~~~v~~~l~~-vF~~v~~~~~~~-~~N~Vl 712 (759)
..+...+.|.+ -|-.+..+++-- ..|.|.
T Consensus 215 Qvqrtce~l~~~gf~~i~~vEv~~~qk~~V~ 245 (314)
T KOG2915|consen 215 QVQRTCEALRSLGFIEIETVEVLLVQKNGVK 245 (314)
T ss_pred HHHHHHHHHHhCCCceEEEEEeehhhhhcee
Confidence 44445566655 577766666433 344443
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0065 Score=58.30 Aligned_cols=95 Identities=15% Similarity=0.180 Sum_probs=62.5
Q ss_pred CCCCeEEEECCCcchhHHHHHH-----hCCCeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeecccCC--CcccEE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYD-----AGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSMQ--GGLDAL 135 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~-----~G~~~VtgIDiS~~~I~~a~~r~~~~~----~~i~f~~~D~~~~~--gtfD~I 135 (759)
.+...|+|+|||.|.++..|+. ..-.+|++||.++..++.+.++..... .++.+..+++.+.. ...+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 4678999999999999999988 422369999999999998888764432 45667777665443 556666
Q ss_pred EeCCCChhHHHHHHHHHHHhcccCcEEEE
Q 004354 136 MEPELGHKLGNQYLSEVKRLLKSGGKFVC 164 (759)
Q Consensus 136 i~~~~~~~~~~~~l~ei~rvLkpGG~lii 164 (759)
+.-..--.....+++.+.+ ++-.+++
T Consensus 104 vgLHaCG~Ls~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 104 VGLHACGDLSDRALRLFIR---PNARFLV 129 (141)
T ss_pred EEeecccchHHHHHHHHHH---cCCCEEE
Confidence 6533211223444444444 4444443
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.034 Score=55.91 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHH---HHHHHHhhcCCCCCCCeE
Q 004354 506 YHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLT---MLNLAEDYFGFTQDKSLK 582 (759)
Q Consensus 506 Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~---v~~vA~~~Fgl~~~~rl~ 582 (759)
+.+-++-++.++.. +. ....+++.||.|+|.=...|.=.+|+.+++.||-... .++.+.+.+|+ ++++
T Consensus 31 ~~~Hi~DSL~~~~~-~~-----~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~ 101 (184)
T PF02527_consen 31 WERHILDSLALLPF-LP-----DFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL---SNVE 101 (184)
T ss_dssp HHHHHHHHHGGGGC-S------CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEE
T ss_pred HHHHHHHHHHhhhh-hc-----cCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC---CCEE
Confidence 44556666655442 21 2222899999999955555666679999999999885 45556667788 3699
Q ss_pred EEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHH
Q 004354 583 VHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLT 662 (759)
Q Consensus 583 v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~ 662 (759)
++.+++.+ ... ..+||+|+.=+.++- ..+++.
T Consensus 102 v~~~R~E~--~~~--------------------------------~~~fd~v~aRAv~~l--------------~~l~~~ 133 (184)
T PF02527_consen 102 VINGRAEE--PEY--------------------------------RESFDVVTARAVAPL--------------DKLLEL 133 (184)
T ss_dssp EEES-HHH--TTT--------------------------------TT-EEEEEEESSSSH--------------HHHHHH
T ss_pred EEEeeecc--ccc--------------------------------CCCccEEEeehhcCH--------------HHHHHH
Confidence 99999887 111 378999999665531 678999
Q ss_pred HHHccCcCcEEEEEecCC
Q 004354 663 VKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 663 ~~~~L~~~Gilv~N~~~~ 680 (759)
+...|+++|.+++---..
T Consensus 134 ~~~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 134 ARPLLKPGGRLLAYKGPD 151 (184)
T ss_dssp HGGGEEEEEEEEEEESS-
T ss_pred HHHhcCCCCEEEEEcCCC
Confidence 999999999988665433
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0056 Score=62.85 Aligned_cols=96 Identities=17% Similarity=0.089 Sum_probs=72.4
Q ss_pred CCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC--Cc-ccEEEeCCCCh
Q 004354 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ--GG-LDALMEPELGH 142 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~--gt-fD~Ii~~~~~~ 142 (759)
..+++|||.|.|.-+..|+=. .. +||-+|....=+...+.-... .-++++++++.+++.. .. ||+|++-...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~-~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDL-KVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCC-cEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc-
Confidence 579999999999999887632 33 499999887666555444332 4467999999999887 34 9999996532
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
....+++-+..++++||.++..-+
T Consensus 146 -~L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 146 -SLNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred -chHHHHHHHHHhcccCCcchhhhH
Confidence 257788889999999998765543
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0021 Score=65.39 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=69.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
.....|+.+-.|.|..+..+..+.+...|.++|++|..++..++...+. -..++.++.+|+.+++..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~------------ 167 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE------------ 167 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T------------
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc------------
Confidence 3457899999999977777777656678999999999999999887221 257899999999999762
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
..+|-||++.... +.+||..+..+++++|++-
T Consensus 168 ----------------------~~~drvim~lp~~--------------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 168 ----------------------GKFDRVIMNLPES--------------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----------------------T-EEEEEE--TSS--------------GGGGHHHHHHHEEEEEEEE
T ss_pred ----------------------cccCEEEECChHH--------------HHHHHHHHHHHhcCCcEEE
Confidence 5699999954221 2479999999999999863
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0022 Score=68.07 Aligned_cols=59 Identities=22% Similarity=0.198 Sum_probs=51.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
...+||.||.|.|.++..|.... .++++||+|+.+++.+++.+.- .++++++.+|+.++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~ 87 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKV 87 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccC
Confidence 44789999999999999999883 4899999999999999998853 46899999998764
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0022 Score=63.33 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=54.0
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
..+..+|.|.|.|+++..+. .-+|.+||.||...+.|++...++.+.++.|+.+||+.|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y 92 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY 92 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc
Confidence 46889999999999998887 349999999999999999999888889999999999998
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.004 Score=67.18 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=78.6
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHh--c------cCCCCcEEEEeecccCC----CcccE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRN--V------RDRSDMRWRVMDMTSMQ----GGLDA 134 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~--~------~~~~~i~f~~~D~~~~~----gtfD~ 134 (759)
...++|.+|.|.|.-.+++.+. ++.+|+-+|.+|.||+.+++.. . -..|+++.+..|+.++- ..||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 4568999999999999999987 4788999999999999887321 1 12478999999988876 78999
Q ss_pred EEeCCCCh---hH----HHHHHHHHHHhcccCcEEEEEE
Q 004354 135 LMEPELGH---KL----GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 135 Ii~~~~~~---~~----~~~~l~ei~rvLkpGG~liiit 166 (759)
|+..-..+ .. -..+...+.|.|+++|.+++..
T Consensus 369 vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 369 VIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 99853211 11 5677888899999999988765
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0029 Score=66.83 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=52.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
...+||.||.|.|.++..|.+..+ .+++||+|+.+++.+++.++. .++++++.+|+.++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKV 87 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcC
Confidence 457899999999999999998864 599999999999999998864 57899999998764
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0051 Score=63.56 Aligned_cols=134 Identities=14% Similarity=0.178 Sum_probs=84.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC------------CCCCCeEEEEccHHHHHHhh
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF------------TQDKSLKVHITDGIKFVREM 595 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl------------~~~~rl~v~i~Da~~~l~~~ 595 (759)
....+|||.|+|-|.-..+|..+ +.+|++||+.+.-++.|.+.-++ ....+++++.+|..++=..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~- 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE- 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS-
T ss_pred CCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh-
Confidence 34569999999999999999987 35999999999999998544332 1346789999997764211
Q ss_pred cccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcE-EE
Q 004354 596 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGL-FI 674 (759)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gi-lv 674 (759)
..++||+|.= -.....+ |+. ....+.+.++++|+|+|. |.
T Consensus 113 -------------------------------~~g~fD~iyD----r~~l~Al---pp~-~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 113 -------------------------------DVGKFDLIYD----RTFLCAL---PPE-MRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp -------------------------------CHHSEEEEEE----CSSTTTS----GG-GHHHHHHHHHHCEEEEEEEEE
T ss_pred -------------------------------hcCCceEEEE----ecccccC---CHH-HHHHHHHHHHHHhCCCCcEEE
Confidence 1247999863 1111222 333 567899999999999997 33
Q ss_pred EEecCC----ChhHHHHHHHHHHHhcCceEEEe
Q 004354 675 VNLVSR----SQATKDMVISRMKMVFNHLFCLQ 703 (759)
Q Consensus 675 ~N~~~~----~~~~~~~v~~~l~~vF~~v~~~~ 703 (759)
+-+.-. ......--.+.+.+.|..-+.+.
T Consensus 154 i~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~ 186 (218)
T PF05724_consen 154 ITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIE 186 (218)
T ss_dssp EEEES-CSCSSSSS----HHHHHHHHTTTEEEE
T ss_pred EEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEE
Confidence 333211 11111112355666666544443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.011 Score=59.35 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=72.2
Q ss_pred eEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeeccc--CCCcccEEEeCCCChhHHH
Q 004354 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTS--MQGGLDALMEPELGHKLGN 146 (759)
Q Consensus 71 ~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~--~~gtfD~Ii~~~~~~~~~~ 146 (759)
+++|+|+|.|.-+..|+=.-. .+++.+|.+..=+...+.-... .-.++++++..+++ ....||+|++-.... ..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~--l~ 128 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP--LD 128 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS--HH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC--HH
Confidence 899999999999988865422 3699999998766655544332 34579999999998 338999999966442 56
Q ss_pred HHHHHHHHhcccCcEEEEEEc
Q 004354 147 QYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 147 ~~l~ei~rvLkpGG~liiit~ 167 (759)
.+++-+...+++||++++.--
T Consensus 129 ~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 129 KLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp HHHHHHGGGEEEEEEEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEEcC
Confidence 888999999999999988863
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0045 Score=67.14 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCCh----hH
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGH----KL 144 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~----~~ 144 (759)
-...+|+|.|.|+.+..+.. -|.+|-++++....+..++..+. +.++.+-+|+.+-...-|+|++....| ..
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDed 253 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQDTPKGDAIWMKWILHDWTDED 253 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc---CCcceecccccccCCCcCeEEEEeecccCChHH
Confidence 46899999999999999998 57779999999888876665542 558999999877666678999855332 34
Q ss_pred HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 145 GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 145 ~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
..++|++++..|+|||.+++...-
T Consensus 254 cvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 254 CVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred HHHHHHHHHHhCCCCCEEEEEecc
Confidence 889999999999999999999763
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.003 Score=63.96 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=55.6
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-------CcccEEEeC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-------GGLDALMEP 138 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-------gtfD~Ii~~ 138 (759)
....|+|.-||.|..+..++..|.. |++||++|.-|..|+.+++--+ .+++|+++|+.++- ..+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~-VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe-EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 3468999999999999999988775 9999999999987777664322 37999999998875 345577654
Q ss_pred C
Q 004354 139 E 139 (759)
Q Consensus 139 ~ 139 (759)
.
T Consensus 173 p 173 (263)
T KOG2730|consen 173 P 173 (263)
T ss_pred C
Confidence 3
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.005 Score=60.52 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=46.8
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhc
Q 004354 532 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 532 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~ 596 (759)
.|+.+-.|+|+.+..+...+ .+|.+||+||.-++.|+... |. .+++.++.+|..+++++..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv--~~~I~~i~gD~~~~~~~~~ 65 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGV--ADNIDFICGDFFELLKRLK 65 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEeCCHHHHHhhcc
Confidence 47788888888877777764 58999999999999999886 64 6799999999999887754
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0065 Score=61.72 Aligned_cols=45 Identities=27% Similarity=0.363 Sum_probs=34.7
Q ss_pred CCCCeEEEEccccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHhh
Q 004354 528 GKSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 572 (759)
Q Consensus 528 ~~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiDp~v~~vA~~~ 572 (759)
+.+.+|...|+++| +|+|.|.+..+ ..+|.+.|||+.+++.|++-
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 46789999999999 88888888432 35999999999999999764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.015 Score=59.17 Aligned_cols=135 Identities=20% Similarity=0.167 Sum_probs=90.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
+.+.=+|.||+|+|.....|... ......|||+|.|+++|.+ +.-+ -.++.+|--+=+
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~--~e~e---gdlil~DMG~Gl--------------- 106 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE--RELE---GDLILCDMGEGL--------------- 106 (270)
T ss_pred CCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH--hhhh---cCeeeeecCCCC---------------
Confidence 34667999999999888888765 3589999999999999986 2212 234444411110
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE-c----CCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCCh
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILII-D----VDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 682 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~-D----~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~ 682 (759)
+.....||.+|. - +++.|.+... |... -..|+..+..+|+.++-.|+.+.+.+.
T Consensus 107 -----------------pfrpGtFDg~ISISAvQWLcnA~~s~~~--P~~R--l~~FF~tLy~~l~rg~raV~QfYpen~ 165 (270)
T KOG1541|consen 107 -----------------PFRPGTFDGVISISAVQWLCNADKSLHV--PKKR--LLRFFGTLYSCLKRGARAVLQFYPENE 165 (270)
T ss_pred -----------------CCCCCccceEEEeeeeeeecccCccccC--hHHH--HHHHhhhhhhhhccCceeEEEecccch
Confidence 112467887773 1 1233332211 2222 356999999999999999999999988
Q ss_pred hHHHHHH-HHHHHhcCceEEEeec
Q 004354 683 ATKDMVI-SRMKMVFNHLFCLQLE 705 (759)
Q Consensus 683 ~~~~~v~-~~l~~vF~~v~~~~~~ 705 (759)
...+++. +.+++=|.--..++.+
T Consensus 166 ~q~d~i~~~a~~aGF~GGlvVd~P 189 (270)
T KOG1541|consen 166 AQIDMIMQQAMKAGFGGGLVVDWP 189 (270)
T ss_pred HHHHHHHHHHHhhccCCceeeecc
Confidence 8888877 5577778865454443
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0042 Score=66.01 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=53.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
....|+.||-|.|.++..|.+.. .++++||+|+...+.-++.|. .+++++++.+|+.++
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKW 88 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTS
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--hcccceeeecchhcc
Confidence 45789999999999999999886 699999999999999999987 578999999999886
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.074 Score=54.35 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=107.0
Q ss_pred HHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---C
Q 004354 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---G 130 (759)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---g 130 (759)
+..+++ .+.++.|+||--+.+..+|.+.+. ..+++.|+++..++.|.+...+.. +.++..++|....- .
T Consensus 10 va~~V~-----~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d 84 (226)
T COG2384 10 VANLVK-----QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELED 84 (226)
T ss_pred HHHHHH-----cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccC
Confidence 445554 345599999999999999998864 569999999999999988775433 45677777764332 4
Q ss_pred cccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEe
Q 004354 131 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADK 210 (759)
Q Consensus 131 tfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K 210 (759)
.+|+++....+-..+..++++-.+.|+.=-+|++-.-.++..++.++... +|.+..+.+..+ ....|=+.++.+
T Consensus 85 ~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~--~~~I~~E~ileE----~~kiYEIlv~e~ 158 (226)
T COG2384 85 EIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSAN--SYEIKAETILEE----DGKIYEILVVEK 158 (226)
T ss_pred CcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhC--Cceeeeeeeecc----cCeEEEEEEEec
Confidence 79999988877777888999988888755567766655555566665433 899999888774 245566667777
Q ss_pred CC
Q 004354 211 EN 212 (759)
Q Consensus 211 ~~ 212 (759)
..
T Consensus 159 ~~ 160 (226)
T COG2384 159 SS 160 (226)
T ss_pred CC
Confidence 54
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.01 Score=56.49 Aligned_cols=64 Identities=8% Similarity=-0.020 Sum_probs=50.4
Q ss_pred eEEEECCCcchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCCCcccE
Q 004354 71 QILVPGCGNSRLSEHLYDAGFH-GITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQGGLDA 134 (759)
Q Consensus 71 ~ILDlGCG~G~ls~~L~~~G~~-~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~gtfD~ 134 (759)
.+||+|||.|..+..++..+.. +++++|.++.+++.++++.... .+++.+....+.+-.++..+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~~g~~~~ 66 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDRDGELEF 66 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCCCCeEEE
Confidence 4899999999999999888654 7999999999999988876543 35688888877665544433
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.017 Score=63.03 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=61.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
.++.++|||||++|..+..|.+.|. .|++||..+ |...+ ...+++.....|..... +.+|.++|.....
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-----l~~~L-~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~- 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-----MAQSL-MDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK- 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-----cCHhh-hCCCCEEEEeccCcccCCCCCCCCEEEEecccC-
Confidence 4788999999999999999999998 599999666 22222 23467888888875544 6799999976432
Q ss_pred HHHHHHHHHHHhcccC
Q 004354 144 LGNQYLSEVKRLLKSG 159 (759)
Q Consensus 144 ~~~~~l~ei~rvLkpG 159 (759)
+.+..+-+.+.|..|
T Consensus 282 -P~rva~lm~~Wl~~g 296 (357)
T PRK11760 282 -PARVAELMAQWLVNG 296 (357)
T ss_pred -HHHHHHHHHHHHhcC
Confidence 445555555555443
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.036 Score=56.13 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=76.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC----C-CcccEEEeCCC-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM----Q-GGLDALMEPEL- 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~----~-gtfD~Ii~~~~- 140 (759)
.++.+||+||-|-|...-.+.+.....-+-|+..|.++++|+...-....++..+.+-..+. + +.||-|+-...
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 36889999999999999988887665678899999999999887644445666665533322 2 77999998653
Q ss_pred -ChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 141 -GHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 141 -~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
..+....+.+.+.|+|||+|+|-+.-
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 22347888899999999999986553
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.02 Score=58.49 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=61.1
Q ss_pred CCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC------CcccEEEeCC---
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------GGLDALMEPE--- 139 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~------gtfD~Ii~~~--- 139 (759)
..++|||||=+......- .++-+|+.||+.+. .-.+.+.|+.+.+ +.||+|.++-
T Consensus 52 ~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~--------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ--------------HPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred cceEEeecccCCCCcccc--cCceeeEEeecCCC--------------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 479999999877655432 34435999999871 1134666766654 7899999853
Q ss_pred -C-ChhHHHHHHHHHHHhcccCcE-----EEEEEcC
Q 004354 140 -L-GHKLGNQYLSEVKRLLKSGGK-----FVCLTLA 168 (759)
Q Consensus 140 -~-~~~~~~~~l~ei~rvLkpGG~-----liiit~~ 168 (759)
. .+..+-.|+..+++.|+|+|. ++++...
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 2 244589999999999999999 8877643
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.016 Score=65.59 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=56.2
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~ 129 (759)
+...+.+++.. +.+..+||+-||||.++..+++ +...|+||++++.+++.|+.++..+ ..+.+|+++-+++.-
T Consensus 371 Lys~i~e~~~l---~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~ 444 (534)
T KOG2187|consen 371 LYSTIGEWAGL---PADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLF 444 (534)
T ss_pred HHHHHHHHhCC---CCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCccceeeeecchhhcc
Confidence 33344445443 5678899999999999998875 4778999999999999998877543 468999999555543
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0098 Score=58.84 Aligned_cols=95 Identities=12% Similarity=0.032 Sum_probs=73.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc-cCCCCcEEEEeecccCC-CcccEEEeCCCCh---
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQ-GGLDALMEPELGH--- 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~-~~~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~--- 142 (759)
..+.+.|+|+|+|.++.-.+.. .++|++|+.+|.-.+.+.+++. ....+++.+.+|+.+.. ...|+|+|-....
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi 110 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALI 110 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhh
Confidence 3478999999999999877665 6679999999988888877752 34467899999999887 7789999954221
Q ss_pred -hHHHHHHHHHHHhcccCcEEE
Q 004354 143 -KLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 143 -~~~~~~l~ei~rvLkpGG~li 163 (759)
+.....++.+...|+.++.++
T Consensus 111 ~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred cccccHHHHHHHHHhhcCCccc
Confidence 124556677777888888776
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.005 Score=55.70 Aligned_cols=91 Identities=16% Similarity=0.033 Sum_probs=42.6
Q ss_pred EEECCCcchhHHHHHHh----CCCeEEEEeCCHH---HHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCCC
Q 004354 73 LVPGCGNSRLSEHLYDA----GFHGITNVDFSKV---VISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPEL 140 (759)
Q Consensus 73 LDlGCG~G~ls~~L~~~----G~~~VtgIDiS~~---~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~ 140 (759)
||+|+..|..+..+++. +..+++++|..+. +-+.+++ .....+++++.+|..+.- +++|+++....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999988877653 2225999999994 3332222 112346899999886543 79999999764
Q ss_pred C-hhHHHHHHHHHHHhcccCcEEEEE
Q 004354 141 G-HKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 141 ~-~~~~~~~l~ei~rvLkpGG~liii 165 (759)
. .......++.+.+.|+|||.+++=
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2 234788899999999999988864
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.026 Score=60.74 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=80.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----C-cccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----G-GLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----g-tfD~Ii~~ 138 (759)
.++..|||+.+|.|.=+.++++.- -..|++.|+++.-+..++.+..+.+ .++...+.|.+... + .||.|+..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 678899999999999999998862 2469999999999998888775543 46777778887763 4 59999973
Q ss_pred C----C--------------C------hhHHHHHHHHHHHhc----ccCcEEEEEEcC
Q 004354 139 E----L--------------G------HKLGNQYLSEVKRLL----KSGGKFVCLTLA 168 (759)
Q Consensus 139 ~----~--------------~------~~~~~~~l~ei~rvL----kpGG~liiit~~ 168 (759)
. . . .....++|+.+.+.+ ||||+++..|.+
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 2 0 0 011678899999999 999999999975
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.032 Score=59.52 Aligned_cols=97 Identities=24% Similarity=0.326 Sum_probs=63.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHh---ccCC---------------------------CC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN---VRDR---------------------------SD 117 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~---~~~~---------------------------~~ 117 (759)
.+.+||..|||.|+++..|+..|+. +-|-++|--|+= +..-. .+.. |.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli-~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLI-CSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHH-HHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 4678999999999999999999996 777788876652 11100 0000 11
Q ss_pred ------------cEEEEeecccCC------CcccEEEeCC--CChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 118 ------------MRWRVMDMTSMQ------GGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 118 ------------i~f~~~D~~~~~------gtfD~Ii~~~--~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+..-.+|+.+.- +.||+|+... ...+.+-.+++.|..+|+|||+++=+.
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLG 296 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEecc
Confidence 111123333322 5799988643 223347899999999999999988664
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.025 Score=56.78 Aligned_cols=100 Identities=18% Similarity=0.124 Sum_probs=68.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC--------CCCcEEEEeecccCC------Ccc
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD--------RSDMRWRVMDMTSMQ------GGL 132 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~--------~~~i~f~~~D~~~~~------gtf 132 (759)
....+.|||||-|.+...|+..-. .-+.|.+|--.+-+..++|+.+. .+++.....+....- |.+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 456899999999999999987733 35899998888887777776332 245666666554432 443
Q ss_pred cEE-EeCCCChh---------HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 133 DAL-MEPELGHK---------LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 133 D~I-i~~~~~~~---------~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+-. ++....|- .-..++.+..-+|++||.++.++-
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 332 33332221 156788999999999999998874
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0089 Score=64.24 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=38.0
Q ss_pred CCCeEEEEccccc----HHHHHHHHhCC----CCcEEEEEcCHHHHHHHHhh
Q 004354 529 KSVKAVVIGLGAG----LLPMFLHECMP----FVGIEAVELDLTMLNLAEDY 572 (759)
Q Consensus 529 ~~~~vLviGlG~G----~l~~~L~~~~p----~~~i~~VEiDp~v~~vA~~~ 572 (759)
.+.+|...|+.+| +++|.|.+.++ ..+|.+.|||+.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 4589999999999 88899988753 35899999999999999865
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.063 Score=57.32 Aligned_cols=70 Identities=9% Similarity=0.012 Sum_probs=54.4
Q ss_pred HhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC
Q 004354 59 SLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (759)
Q Consensus 59 ~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~--~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~ 128 (759)
+.+..+.+.+++..+|.=-|.|..+..+++.+. .+++|+|-++.+|+.|+++......++.+++..+.++
T Consensus 14 E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l 85 (314)
T COG0275 14 EVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANL 85 (314)
T ss_pred HHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHH
Confidence 333333347889999999999999999998853 4699999999999999998866556677776655444
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.034 Score=59.57 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=69.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-l~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+-||.+|.|.|.|.+|....- ..+|-+||. .+|.+.|++-.. -.-.+|+.|+-|.-.+. ++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------------ 240 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDI--EL------------ 240 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccc--cC------------
Confidence 34678999999999999999883 459999998 578888888761 12357899988753332 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHH---HHHHHccCcCcEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFL---LTVKDALSEQGLFI 674 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl---~~~~~~L~~~Gilv 674 (759)
.++.|+||. ++.+.| ++.+..| -.+++-|+|+|...
T Consensus 241 --------------------PEk~DviIS-----EPMG~m------L~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 241 --------------------PEKVDVIIS-----EPMGYM------LVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred --------------------chhccEEEe-----ccchhh------hhhHHHHHHHHHHHhhcCCCCccc
Confidence 368999997 333222 3444444 45678999999655
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.032 Score=57.58 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCC-cEEEEeecccCC-----CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQ-----GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~-i~f~~~D~~~~~-----gtfD~Ii~~~~ 140 (759)
.++..+||+|.-||.++..+++.|.+.|+++|..-..+..-.+ ..++ +.+...|+..+. +..|+++|.-.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR----~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvS 153 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR----NDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVS 153 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh----cCCcEEEEecCChhhCCHHHcccCCCeEEEEee
Confidence 4678999999999999999999999999999998866543221 1233 334445555554 56788888543
Q ss_pred ChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 141 GHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 141 ~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
. -.....|-.+..+++++|.++...
T Consensus 154 F-ISL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 154 F-ISLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred h-hhHHHHHHHHHHhcCCCceEEEEe
Confidence 2 236788999999999999887664
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.02 Score=62.11 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=47.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~ 591 (759)
+.+.||.+|.|+|.|.+|..+.. ..+|.+||-.... +.|++-+ ++ ++.++++.+..-+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~--~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGL--EDVITVIKGKVEDI 121 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCc--cceEEEeecceEEE
Confidence 45789999999999999999996 5599999986554 8888877 44 56788888865554
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.038 Score=59.24 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=67.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHH---HHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLN---LAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~---vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
..++||.||+|.|.-.--+.+.-+. .|.++|-++--+- .++++.|. + ........|++.+.. .
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~--~-~~~~~lplgvE~Lp~-~--------- 180 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQ--D-PPVFELPLGVEDLPN-L--------- 180 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCC--C-ccEEEcCcchhhccc-c---------
Confidence 4579999999999887656655333 7888876665433 34555563 2 233344567777654 2
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..||+||. -..---+..| -+.|..+++.|++||.||+-.
T Consensus 181 -----------------------~~FDtVF~----MGVLYHrr~P------l~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 181 -----------------------GAFDTVFS----MGVLYHRRSP------LDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred -----------------------CCcCEEEE----eeehhccCCH------HHHHHHHHHhhCCCCEEEEEE
Confidence 57999997 1110112223 678999999999999999764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.098 Score=52.03 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=64.1
Q ss_pred CCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe-ecccCC-----------Cc
Q 004354 66 SSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-DMTSMQ-----------GG 131 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~-D~~~~~-----------gt 131 (759)
..|+.+|||+||..|..+.-..+. +. .-|.|||+-.. ...+.++++++ |+++.. ..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----------EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 367899999999999999876665 22 24999997541 12234666666 777754 56
Q ss_pred ccEEEeCCC---------ChhH----HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 132 LDALMEPEL---------GHKL----GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 132 fD~Ii~~~~---------~~~~----~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
.|+|++... .|.. -..++.-....++|+|.|+|-.+...
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 899998542 1222 22233444567789999999998653
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.034 Score=57.19 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=85.3
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFH-GITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~-~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~ 123 (759)
|..-...+..-+.-=+.....+|+.+||=+|+++|+...+..+. |.. -|+++++|+..=..... .++.++|+--+.-
T Consensus 134 WnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~n-mAkkRtNiiPIiE 212 (317)
T KOG1596|consen 134 WNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLIN-MAKKRTNIIPIIE 212 (317)
T ss_pred eChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHH-HhhccCCceeeec
Confidence 54433334433332223333478999999999999999888875 332 49999999854433222 2345678888899
Q ss_pred ecccCC------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 124 DMTSMQ------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 124 D~~~~~------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|++... +..|+|++.-........+.-+..-.||+||.|++..-
T Consensus 213 DArhP~KYRmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 213 DARHPAKYRMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred cCCCchheeeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 998765 88999999766666666677788999999999987753
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.079 Score=55.60 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=66.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...++|.||.|.|..+.-+..++ .+|.+-|+++.|...-++. | .+|+-.| +|- +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k-g------~~vl~~~--~w~-~-------------- 147 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK-G------FTVLDID--DWQ-Q-------------- 147 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC-C------CeEEehh--hhh-c--------------
Confidence 56789999999999998888886 4699999999997654432 3 3455333 331 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
.+.+||+|.+ ++--|-.. .| ...|+.+++.|+|+|.+++-++
T Consensus 148 ------------------~~~~fDvIsc-LNvLDRc~---~P------~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 148 ------------------TDFKFDVISC-LNVLDRCD---RP------LTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred ------------------cCCceEEEee-hhhhhccC---CH------HHHHHHHHHHhCCCCEEEEEEE
Confidence 1357999985 11111100 02 6789999999999998886654
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.23 Score=51.11 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCC-CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCH---HHHHHHHhhcCCCCCCCe
Q 004354 506 YHMGIISGFTLISSYLESVASVGK-SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDL---TMLNLAEDYFGFTQDKSL 581 (759)
Q Consensus 506 Y~~~m~~~l~l~~~~~~~~~~~~~-~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp---~v~~vA~~~Fgl~~~~rl 581 (759)
|.+-++.++.+.... .. +.+++.||.|+|.=...|.=.+|+.+++-||-.. .-++.+.+-+|+ +++
T Consensus 50 ~~rHilDSl~~~~~~-------~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L---~nv 119 (215)
T COG0357 50 WQRHILDSLVLLPYL-------DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL---ENV 119 (215)
T ss_pred HHHHHHHHhhhhhcc-------cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC---CCe
Confidence 555566555544431 22 6899999999993333344567889999999876 456677777887 569
Q ss_pred EEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCc-eeEEEEcCCCCCCCCCCCcCCCCCChHHHH
Q 004354 582 KVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNAR-VDILIIDVDSPDSSSGMTCPAADFVEGSFL 660 (759)
Q Consensus 582 ~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl 660 (759)
+++.+.+-+|-.+ .+ ||+|..=+.++ | ..+.
T Consensus 120 ~i~~~RaE~~~~~----------------------------------~~~~D~vtsRAva~-----L---------~~l~ 151 (215)
T COG0357 120 EIVHGRAEEFGQE----------------------------------KKQYDVVTSRAVAS-----L---------NVLL 151 (215)
T ss_pred EEehhhHhhcccc----------------------------------cccCcEEEeehccc-----h---------HHHH
Confidence 9999988877322 23 99999865554 1 5678
Q ss_pred HHHHHccCcCcEEEEEecCCChhHHHHHHHHH---HHhcCceEEEeecC
Q 004354 661 LTVKDALSEQGLFIVNLVSRSQATKDMVISRM---KMVFNHLFCLQLEE 706 (759)
Q Consensus 661 ~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l---~~vF~~v~~~~~~~ 706 (759)
+.+...|++||.+++-............-..+ .-.+..++.+..+.
T Consensus 152 e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~ 200 (215)
T COG0357 152 ELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPE 200 (215)
T ss_pred HHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCC
Confidence 88999999988876544433333333322222 22333455555444
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.054 Score=57.63 Aligned_cols=44 Identities=27% Similarity=0.361 Sum_probs=39.7
Q ss_pred CCCeEEEEccccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHhh
Q 004354 529 KSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 572 (759)
Q Consensus 529 ~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiDp~v~~vA~~~ 572 (759)
.+.+|...|+++| +++|.|.+.+| ..+|.+.|||..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 5789999999999 89999999986 36999999999999999764
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.082 Score=55.38 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=65.7
Q ss_pred eeecCCccchHHHHHH--------HHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHH
Q 004354 495 LKVYHGYLASSYHMGI--------ISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTML 566 (759)
Q Consensus 495 ~~~d~~~L~~~Y~~~m--------~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~ 566 (759)
+.+|+-+-...|-+.. +-++.+ ..+..++||.+=+|.|.....+... +.+|+.||-+|.+.
T Consensus 55 v~vDF~~~~~a~rR~~~~g~~~~l~kAvgl---------k~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~va 123 (250)
T PRK10742 55 IFVDFVGGAMAHRRKFGGGRGEAVAKAVGI---------KGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVA 123 (250)
T ss_pred eEEEccCchHHHHHHhcCCCccHHHHHhCC---------CCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHH
Confidence 5788877666665432 222211 1244569999999999998877766 45799999999999
Q ss_pred HHHHhhcCC-------CC--CCCeEEEEccHHHHHHhhc
Q 004354 567 NLAEDYFGF-------TQ--DKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 567 ~vA~~~Fgl-------~~--~~rl~v~i~Da~~~l~~~~ 596 (759)
.+.++.+.- .. ..|++++.+|+.+|++...
T Consensus 124 alL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 124 ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred HHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 998877632 11 1689999999999998753
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.051 Score=58.82 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=55.4
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccc
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~ 127 (759)
+.+...+..++.. .+++.++|.=||.|..+..+++. +...|+|+|.++.+++.+++++.....++.+++++..+
T Consensus 6 pVll~Evl~~L~~---~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 6 SVLLDEVVEGLNI---KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred chhHHHHHHhcCc---CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4455555555543 57789999999999999999876 22469999999999999988875444456666665544
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.23 Score=50.10 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=83.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHH----HHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTM----LNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v----~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||=||.-.|+.++.+....+.-.|-+||..|.+ +++|++. +++-=+.+||..--+-..
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R------~Ni~PIL~DA~~P~~Y~~------- 141 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR------PNIIPILEDARKPEKYRH------- 141 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC------CCceeeecccCCcHHhhh-------
Confidence 45679999999999999999999987799999999865 4566553 456668888765321111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC---
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR--- 680 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~--- 680 (759)
--...|+|+.|+-.++. ..=+..++..-|+++|-+++-+-.|
T Consensus 142 -----------------------~Ve~VDviy~DVAQp~Q------------a~I~~~Na~~FLk~~G~~~i~iKArSId 186 (231)
T COG1889 142 -----------------------LVEKVDVIYQDVAQPNQ------------AEILADNAEFFLKKGGYVVIAIKARSID 186 (231)
T ss_pred -----------------------hcccccEEEEecCCchH------------HHHHHHHHHHhcccCCeEEEEEEeeccc
Confidence 02469999999976643 1457788899999999444443333
Q ss_pred ----ChhHHHHHHHHHHHhc
Q 004354 681 ----SQATKDMVISRMKMVF 696 (759)
Q Consensus 681 ----~~~~~~~v~~~l~~vF 696 (759)
..+..+.-+.+|..-+
T Consensus 187 vT~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 187 VTADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred ccCCHHHHHHHHHHHHHhcC
Confidence 2334444456665544
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.057 Score=57.11 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=62.6
Q ss_pred CeEEEECCCc--chhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCCC--cEEEEeecccCC---------Cccc-
Q 004354 70 PQILVPGCGN--SRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQ---------GGLD- 133 (759)
Q Consensus 70 ~~ILDlGCG~--G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~~--i~f~~~D~~~~~---------gtfD- 133 (759)
...||||||- .....++++. .-.+|+-+|+.|.++..++..+.. .++ ..++++|+++.. +.+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~-~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD-NPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC-CCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 5799999994 3345556554 123699999999999988887643 345 889999999876 4555
Q ss_pred ----EEEeCCCCh-----hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 134 ----ALMEPELGH-----KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 134 ----~Ii~~~~~~-----~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+++.....| .....+++.+...|.||.++++.....
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 444443322 238899999999999999999887654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.044 Score=52.08 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=43.6
Q ss_pred CCCCeEEEEcccccH-HHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHH
Q 004354 528 GKSVKAVVIGLGAGL-LPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 590 (759)
Q Consensus 528 ~~~~~vLviGlG~G~-l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~ 590 (759)
.+..++|+||+|.|. ++..|.+. +..|++||++|..++.|++. .+.++++|-.+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~ 69 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFN 69 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCC
Confidence 345789999999995 88888865 46999999999999998776 26788888543
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.21 Score=53.23 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=93.4
Q ss_pred ecCCccchHHHHHHHHHHh----hhhhhhhhhcccCCCCeEEEEccccc-HHHHHHHHhCCC--CcEEEEEcCHHHHHHH
Q 004354 497 VYHGYLASSYHMGIISGFT----LISSYLESVASVGKSVKAVVIGLGAG-LLPMFLHECMPF--VGIEAVELDLTMLNLA 569 (759)
Q Consensus 497 ~d~~~L~~~Y~~~m~~~l~----l~~~~~~~~~~~~~~~~vLviGlG~G-~l~~~L~~~~p~--~~i~~VEiDp~v~~vA 569 (759)
+|..||...=-+++-.--. ++...+......+.+.+||.|-.|.| .+--.|..+ |. ..|..+|.+|.-++.+
T Consensus 99 iDr~yLnaiGWrGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~-~~~~~~i~LrDys~~Nv~~g 177 (311)
T PF12147_consen 99 IDRNYLNAIGWRGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKH-PERPDSILLRDYSPINVEKG 177 (311)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhC-CCCCceEEEEeCCHHHHHHH
Confidence 7778887654444321111 11111122223478999999999999 444455555 54 6999999999999999
Q ss_pred Hhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCC
Q 004354 570 EDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSG 646 (759)
Q Consensus 570 ~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g 646 (759)
++.. || .+-++++.+||.+.-.-.+ -..+++++|+ +|
T Consensus 178 ~~li~~~gL--~~i~~f~~~dAfd~~~l~~------------------------------l~p~P~l~iV--------sG 217 (311)
T PF12147_consen 178 RALIAERGL--EDIARFEQGDAFDRDSLAA------------------------------LDPAPTLAIV--------SG 217 (311)
T ss_pred HHHHHHcCC--ccceEEEecCCCCHhHhhc------------------------------cCCCCCEEEE--------ec
Confidence 8776 66 4556999999988622211 1366889887 12
Q ss_pred CCcCCCCCCh----HHHHHHHHHccCcCcEEEEEecCCChhH
Q 004354 647 MTCPAADFVE----GSFLLTVKDALSEQGLFIVNLVSRSQAT 684 (759)
Q Consensus 647 ~scPp~~f~~----~~fl~~~~~~L~~~Gilv~N~~~~~~~~ 684 (759)
+ -.-|-+ ..-|.-+.++|.|||.+|..--+.++++
T Consensus 218 L---~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl 256 (311)
T PF12147_consen 218 L---YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL 256 (311)
T ss_pred c---hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch
Confidence 2 222223 3356778899999999998776666554
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.081 Score=56.15 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=77.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccCC-----CcccEE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQ-----GGLDAL 135 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~~-----gtfD~I 135 (759)
....++|.||-|.|...+..... .+.++.-+|+...+++..++-... .++++...-+|-..+- ++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 44679999999999999877765 356799999999999877664421 3577888888865543 899999
Q ss_pred EeCCCC---hh---HHHHHHHHHHHhcccCcEEEEEE
Q 004354 136 MEPELG---HK---LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 136 i~~~~~---~~---~~~~~l~ei~rvLkpGG~liiit 166 (759)
+..... .. ..+.++..+.+.||+||+.++..
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 985422 11 17889999999999999999886
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.033 Score=60.53 Aligned_cols=96 Identities=24% Similarity=0.295 Sum_probs=65.5
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
-..++.+|+|.|.+...+...+|. |..|+.|..-+..++.+++ + .+.-+-+|+.+= .
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~---~-------------- 234 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD---T-------------- 234 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-C---Ccceeccccccc---C--------------
Confidence 467899999999888877778776 7777777666655556654 2 267777876552 2
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEE-----cCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE--EecCC
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILII-----DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV--NLVSR 680 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~-----D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~--N~~~~ 680 (759)
++=|+|++ |..+.|- ..||++|++.|.|+|.+++ |+.+.
T Consensus 235 -------------------P~~daI~mkWiLhdwtDedc-------------vkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 235 -------------------PKGDAIWMKWILHDWTDEDC-------------VKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred -------------------CCcCeEEEEeecccCChHHH-------------HHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 23457775 4433331 5699999999999996654 54443
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.1 Score=56.61 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=54.3
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~ 596 (759)
..++..=+|+|+-+..+...+|..+|.++|.||.+++.|++.+. ...+|+.+++++-.++.+...
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~-~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS-DFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh-hcCCcEEEEeCCHHHHHHHHH
Confidence 46888889999999888888777899999999999999998762 125699999999888766553
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.065 Score=56.13 Aligned_cols=75 Identities=9% Similarity=-0.018 Sum_probs=59.0
Q ss_pred CCCC--eEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC------C----CCcEEEEeecccCC----C
Q 004354 67 SPPP--QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------R----SDMRWRVMDMTSMQ----G 130 (759)
Q Consensus 67 ~~~~--~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~------~----~~i~f~~~D~~~~~----g 130 (759)
+++. +|||+=+|+|..+..++..|++ |+++|-++.+....+..+... . .+++.+++|..++- .
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 4444 8999999999999999999997 999999999887776655431 1 35778888876653 5
Q ss_pred cccEEEeCCCCh
Q 004354 131 GLDALMEPELGH 142 (759)
Q Consensus 131 tfD~Ii~~~~~~ 142 (759)
.||+|+..+..+
T Consensus 164 ~fDVVYlDPMfp 175 (250)
T PRK10742 164 RPQVVYLDPMFP 175 (250)
T ss_pred CCcEEEECCCCC
Confidence 799999977443
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.085 Score=57.99 Aligned_cols=146 Identities=14% Similarity=0.210 Sum_probs=89.8
Q ss_pred CCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCC-----CCCCeEEEEccHHHHHHhhcc
Q 004354 529 KSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFT-----QDKSLKVHITDGIKFVREMKS 597 (759)
Q Consensus 529 ~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----gl~-----~~~rl~v~i~Da~~~l~~~~~ 597 (759)
...+||.||+| ||=|..|.... -..+.+|||+++.++-|++.. +-. .+-...++.+|...- ....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~--~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSE--SLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCS--HHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccc--hhhh
Confidence 56899999999 77899998864 358999999999999998776 100 012345677775421 1110
Q ss_pred cCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh----HHHHHHHHHccCcCcEE
Q 004354 598 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLF 673 (759)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~----~~fl~~~~~~L~~~Gil 673 (759)
.++ ....+||+|=+=. |-.-.|-+ ..||.++.++|+|||+|
T Consensus 138 --------~~~-----------------~~~~~FDvVScQF----------alHY~Fese~~ar~~l~Nvs~~Lk~GG~F 182 (331)
T PF03291_consen 138 --------KLP-----------------PRSRKFDVVSCQF----------ALHYAFESEEKARQFLKNVSSLLKPGGYF 182 (331)
T ss_dssp --------TSS-----------------STTS-EEEEEEES-----------GGGGGSSHHHHHHHHHHHHHTEEEEEEE
T ss_pred --------hcc-----------------ccCCCcceeehHH----------HHHHhcCCHHHHHHHHHHHHHhcCCCCEE
Confidence 000 0135899997611 11233332 45999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHH--------hcC-ceEEEeecCC------ccEEEEEecCC
Q 004354 674 IVNLVSRSQATKDMVISRMKM--------VFN-HLFCLQLEED------VNLVLFGLSSE 718 (759)
Q Consensus 674 v~N~~~~~~~~~~~v~~~l~~--------vF~-~v~~~~~~~~------~N~Vl~a~~~~ 718 (759)
+.-++. .. .++.+|+. .|. .+|.+..+.+ ++...|-+...
T Consensus 183 IgT~~d--~~---~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~ 237 (331)
T PF03291_consen 183 IGTTPD--SD---EIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDA 237 (331)
T ss_dssp EEEEE---HH---HHHCCHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTC
T ss_pred EEEecC--HH---HHHHHHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCc
Confidence 988743 22 24555555 233 4788877666 66777766554
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.066 Score=60.69 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHH----HHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCC
Q 004354 505 SYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFL----HECMPFVGIEAVELDLTMLNLAEDYFGF-TQDK 579 (759)
Q Consensus 505 ~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L----~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~ 579 (759)
.|-+|+..+|.=..+ .++......++++|+|=|-|.... ......+++.+||-+|..+-.-+. ..+ ..+.
T Consensus 347 ~Yq~Ai~~AL~Drvp----d~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~ 421 (649)
T KOG0822|consen 347 QYQQAILKALLDRVP----DESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDN 421 (649)
T ss_pred HHHHHHHHHHHhhCc----ccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcC
Confidence 477888877642211 122334677899999999655422 233456799999999987665544 222 2588
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
+++++-+|-+.|-.- ..+.|+|+..+-.+-. ..=+++|.
T Consensus 422 ~Vtii~~DMR~w~ap---------------------------------~eq~DI~VSELLGSFG--------DNELSPEC 460 (649)
T KOG0822|consen 422 RVTIISSDMRKWNAP---------------------------------REQADIIVSELLGSFG--------DNELSPEC 460 (649)
T ss_pred eeEEEeccccccCCc---------------------------------hhhccchHHHhhcccc--------CccCCHHH
Confidence 999999998888411 2568999877654432 22356999
Q ss_pred HHHHHHccCcCcEEEEEecC------CChhHHHHHHHHHHH--hcCceEEEe
Q 004354 660 LLTVKDALSEQGLFIVNLVS------RSQATKDMVISRMKM--VFNHLFCLQ 703 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~------~~~~~~~~v~~~l~~--vF~~v~~~~ 703 (759)
|.-+...|+|+||.|=--.+ .+..++.. +..... .|...|...
T Consensus 461 LDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~-v~a~~~~~~fe~~YVV~ 511 (649)
T KOG0822|consen 461 LDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQE-VKATNDPNAFEAPYVVL 511 (649)
T ss_pred HHHHHhhcCCCceEccchhhhhhcccccHHHHHH-HHhcCCccccccceEEE
Confidence 99999999999998822111 12333433 333333 777666554
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.15 Score=54.92 Aligned_cols=48 Identities=33% Similarity=0.473 Sum_probs=43.1
Q ss_pred CCCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC
Q 004354 528 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT 576 (759)
Q Consensus 528 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~ 576 (759)
+...+|||+|.| .|.++....+.+.-.+|.++|+++.-+++|++ ||..
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~ 216 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT 216 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe
Confidence 456799999999 78888888889988899999999999999999 9984
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.081 Score=61.95 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=46.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC--------CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP--------FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p--------~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
...+||..|+|+|.+...+....+ ...+.++|||+..+..|+..+.....-...++.+|.+..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~ 101 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSY 101 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccc
Confidence 456999999999977766655543 257899999999999999876332223467777776654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.073 Score=57.36 Aligned_cols=75 Identities=16% Similarity=0.062 Sum_probs=44.1
Q ss_pred CCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccC---CCCcEEEEee----cccCC----CcccEE
Q 004354 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD---RSDMRWRVMD----MTSMQ----GGLDAL 135 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~---~~~i~f~~~D----~~~~~----gtfD~I 135 (759)
..++||||||.+-.---|... |+ +++|+|+++.+++.|++..... ...|+.+... +...- ..||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 468999999999765444332 66 5999999999999999987654 3457666542 21111 679999
Q ss_pred EeCCCChhH
Q 004354 136 MEPELGHKL 144 (759)
Q Consensus 136 i~~~~~~~~ 144 (759)
+|++..+..
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 998754443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.29 Score=55.80 Aligned_cols=114 Identities=11% Similarity=0.172 Sum_probs=84.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+++.+=+|.|+.+..|... ..+|.+||++|+.++.|++.-....-.++.++.+|+.++.....
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~----------- 358 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW----------- 358 (432)
T ss_pred cCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-----------
Confidence 34568999999999999888854 36999999999999999998744333459999999999987753
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
....+|+||+|.--. | .++++++.+.+ +.|..|+- +.|....+.+.
T Consensus 359 -------------------~~~~~d~VvvDPPR~----G--------~~~~~lk~l~~-~~p~~IvY--VSCNP~TlaRD 404 (432)
T COG2265 359 -------------------EGYKPDVVVVDPPRA----G--------ADREVLKQLAK-LKPKRIVY--VSCNPATLARD 404 (432)
T ss_pred -------------------ccCCCCEEEECCCCC----C--------CCHHHHHHHHh-cCCCcEEE--EeCCHHHHHHH
Confidence 135799999975222 3 34678877766 45555544 55666666665
Q ss_pred H
Q 004354 688 V 688 (759)
Q Consensus 688 v 688 (759)
+
T Consensus 405 l 405 (432)
T COG2265 405 L 405 (432)
T ss_pred H
Confidence 3
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.23 Score=55.13 Aligned_cols=100 Identities=23% Similarity=0.201 Sum_probs=73.2
Q ss_pred eEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEc-cHHHHHHhhcccCcccccccccc
Q 004354 532 KAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHIT-DGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 532 ~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~-Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
+|+|+|.| .|.++..+.+.++..+|.++|+++.-++.|++++|.. .+..... |...-+.+..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t------------- 234 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELT------------- 234 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHh-------------
Confidence 89999999 6888888888888889999999999999999999752 1111111 4444444433
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.+..+|++|- .++ ....+..+.+.++++|.+++.-+..
T Consensus 235 -----------------~g~g~D~vie--~~G--------------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 235 -----------------GGRGADVVIE--AVG--------------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred -----------------CCCCCCEEEE--CCC--------------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 1346999987 222 2558999999999999888665443
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.15 Score=52.94 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=59.8
Q ss_pred CCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
..++||+||=+.- +++..|. +.| .+|++||||+.+++.-++.- |+ .++.+..|.++=+.+.-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~-~~~-~~I~VvDiDeRll~fI~~~a~~~gl----~i~~~~~DlR~~LP~~~-------- 109 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALT-GLP-KRITVVDIDERLLDFINRVAEEEGL----PIEAVHYDLRDPLPEEL-------- 109 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHH-T---SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTT--------
T ss_pred cCCEEEEEcCCcHHHHHHHhh-CCC-CeEEEEEcCHHHHHHHHHHHHHcCC----ceEEEEecccccCCHHH--------
Confidence 3589999997766 5555553 334 59999999999998877554 66 29999999887665532
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCc-EEEEEecCCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG-LFIVNLVSRS 681 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~G-ilv~N~~~~~ 681 (759)
.++||+++.|. +....|| .=|+......|+..| ...+.+...+
T Consensus 110 -----------------------~~~fD~f~TDP--PyT~~G~---------~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 110 -----------------------RGKFDVFFTDP--PYTPEGL---------KLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp -----------------------SS-BSEEEE-----SSHHHH---------HHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred -----------------------hcCCCEEEeCC--CCCHHHH---------HHHHHHHHHHhCCCCceEEEEEecCc
Confidence 37899999964 2222233 458999999998866 5555554443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.24 Score=50.45 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=89.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHH-----HHHHhhcccCccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI-----KFVREMKSSSATD 602 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~-----~~l~~~~~~~~~~ 602 (759)
....|+.||.--|+...++.++... .+|.+||++|.- ..+.+.++.+|.. +=|.+.-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l------ 107 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEAL------ 107 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHc------
Confidence 4578999999999999999998754 469999998852 2344677766643 2222221
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCC---CCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA---ADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp---~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
....+|+|+.|....- .|...-. ..-+....++.+...|.++|.|++=++-
T Consensus 108 ------------------------~~~~~DvV~sD~ap~~--~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 108 ------------------------GGAPVDVVLSDMAPNT--SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred ------------------------CCCCcceEEecCCCCc--CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 1345899999986632 2221111 1112445567777899999999988764
Q ss_pred CChhHHHHHHHHHHHhcCceEEEeec
Q 004354 680 RSQATKDMVISRMKMVFNHLFCLQLE 705 (759)
Q Consensus 680 ~~~~~~~~v~~~l~~vF~~v~~~~~~ 705 (759)
.... +.++..+++.|..|...+..
T Consensus 162 g~~~--~~~l~~~~~~F~~v~~~KP~ 185 (205)
T COG0293 162 GEDF--EDLLKALRRLFRKVKIFKPK 185 (205)
T ss_pred CCCH--HHHHHHHHHhhceeEEecCc
Confidence 4332 46899999999998888754
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.97 Score=45.19 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=94.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEE----ccHHHHHHhhcccCcccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHI----TDGIKFVREMKSSSATDE 603 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i----~Da~~~l~~~~~~~~~~~ 603 (759)
+..+||.+|..-|+......+.. |+..|.+||| .++-- -+...++. .|-.-+.+=..
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl---------lh~~p--~~Ga~~i~~~dvtdp~~~~ki~e------- 130 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL---------LHIEP--PEGATIIQGNDVTDPETYRKIFE------- 130 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEee---------eeccC--CCCcccccccccCCHHHHHHHHH-------
Confidence 35789999999999998887766 8889999998 33311 12233333 34443332221
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC----hHHHHHHHHHccCcCcEEEEEecC
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV----EGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~----~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
...+.+.|+|+.|...... |+.- -.+.. -.+.|......|.|+|.|++-+|.
T Consensus 131 ---------------------~lp~r~VdvVlSDMapnaT--Gvr~-~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 131 ---------------------ALPNRPVDVVLSDMAPNAT--GVRI-RDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred ---------------------hCCCCcccEEEeccCCCCc--Ccch-hhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 0124789999999866532 2210 11111 122444445668899999999998
Q ss_pred CChhHHHHHHHHHHHhcCceEEEeec----CCccEEEEEecCC
Q 004354 680 RSQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLSSE 718 (759)
Q Consensus 680 ~~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~Vl~a~~~~ 718 (759)
.++. ..+..+|+++|..|-.++.. +.....++|.+-.
T Consensus 187 g~e~--~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k 227 (232)
T KOG4589|consen 187 GSEE--ALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFK 227 (232)
T ss_pred CCch--HHHHHHHHHHhhhcEeeCCccccccccceeeeeeecc
Confidence 7665 34678999999999988753 4455677777654
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.26 Score=54.14 Aligned_cols=120 Identities=11% Similarity=0.158 Sum_probs=87.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~-~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....||..=.|.|-.+.-+...- ..+|.++||||.-++..++..-+.. .+++..+.||+.++..+.
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~------------ 254 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL------------ 254 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc------------
Confidence 35689998888885555454442 2359999999999999999986642 456999999999997663
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
..+|-||+-... .+.+|+..+.++|+++|++-+-...++....+.
T Consensus 255 ---------------------~~aDrIim~~p~--------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~ 299 (341)
T COG2520 255 ---------------------GVADRIIMGLPK--------------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEER 299 (341)
T ss_pred ---------------------ccCCEEEeCCCC--------------cchhhHHHHHHHhhcCcEEEEEeccchhhcccc
Confidence 358999982211 347899999999999999988777766554333
Q ss_pred HHHHHHHhc
Q 004354 688 VISRMKMVF 696 (759)
Q Consensus 688 v~~~l~~vF 696 (759)
....+....
T Consensus 300 ~~~~i~~~~ 308 (341)
T COG2520 300 PEKRIKSAA 308 (341)
T ss_pred hHHHHHHHH
Confidence 344444444
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.1 Score=53.25 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=40.8
Q ss_pred cccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhc
Q 004354 537 GLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 537 GlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~ 596 (759)
|+|||++- |..++ ..|.+|||||.-+..|+... |.+ +|+.++.||-++......
T Consensus 104 g~gGntiq-fa~~~---~~VisIdiDPikIa~AkhNaeiYGI~--~rItFI~GD~ld~~~~lq 160 (263)
T KOG2730|consen 104 GVGGNTIQ-FALQG---PYVIAIDIDPVKIACARHNAEVYGVP--DRITFICGDFLDLASKLK 160 (263)
T ss_pred cCCchHHH-HHHhC---CeEEEEeccHHHHHHHhccceeecCC--ceeEEEechHHHHHHHHh
Confidence 44544443 43333 37999999999999999886 763 499999999888877664
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.35 Score=50.38 Aligned_cols=101 Identities=18% Similarity=0.087 Sum_probs=59.9
Q ss_pred CCCeEEEECCCcchhHHHHH-HhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLY-DAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPELG 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~-~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~~ 141 (759)
.+.+||-+|=+.-. +..++ ....++|+.+||++..++...+.+.+.+.+++..+.|+.+.- +.||++++.+..
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy 122 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY 122 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC
Confidence 46799999854433 22232 234568999999999999988877666666999999998753 999999997643
Q ss_pred h-hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 142 H-KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 142 ~-~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
- .-..-++......||..|......++.
T Consensus 123 T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 123 TPEGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp SHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 2 337888999999999767545555543
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.088 Score=49.98 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=45.1
Q ss_pred EEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEcc
Q 004354 533 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD 587 (759)
Q Consensus 533 vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~D 587 (759)
++.||.|.|..+.++....|..++.+||.+|.+++.+++.+....-++++++...
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~a 56 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAA 56 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 7899999999999999888888999999999999999998743222347776643
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.12 Score=52.78 Aligned_cols=100 Identities=10% Similarity=0.007 Sum_probs=54.7
Q ss_pred CCCeEEEECCCcchhHHHHHHh-----CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----------Cc
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-----GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-----G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----------gt 131 (759)
++..|+|+|.-.|.-+..+++. +-.+|+|||+................++++++++|..+.. +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 5679999999998888766542 2357999999543322111111122478999999998765 22
Q ss_pred ccEEEeCCCC-hhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 132 LDALMEPELG-HKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 132 fD~Ii~~~~~-~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
..+|+..... +....+.|+....++++|+++++...
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 3344443321 12267778889999999999988764
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.069 Score=51.86 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=70.7
Q ss_pred CCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccC----CCCcEEEEeecccCC-----CcccEEE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQ-----GGLDALM 136 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~----~~~i~f~~~D~~~~~-----gtfD~Ii 136 (759)
.+.+|||+|.|--.++-.|... ....|...|-++..++..++..... ...+..+..+..... .+||.|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 4568999999965555444332 2346999999999998876654221 111111111111111 6999999
Q ss_pred eCCC--ChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccc
Q 004354 137 EPEL--GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPK 179 (759)
Q Consensus 137 ~~~~--~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~ 179 (759)
|.+- ..+....+.+.|++.|+|.|..++.+......+..+...
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de 153 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDE 153 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHH
Confidence 9762 223378899999999999999887775544444444443
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.2 Score=55.70 Aligned_cols=129 Identities=13% Similarity=0.163 Sum_probs=77.6
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 610 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~ 610 (759)
.++|.+=+|.|.++..|.... .+|.+||+++..++.|++...+..-++++++.+|+-++...........-+..
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~---- 271 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKG---- 271 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGG----
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhh----
Confidence 379999999999988898775 58999999999999999998554456799999998877554331000000000
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHHH
Q 004354 611 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVIS 690 (759)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 690 (759)
......++|+||+|.-- .| ++..+++.+.+ +. =++-+.|....+.+. +.
T Consensus 272 -------------~~~~~~~~d~vilDPPR----~G--------~~~~~~~~~~~-~~----~ivYvSCnP~tlaRD-l~ 320 (352)
T PF05958_consen 272 -------------IDLKSFKFDAVILDPPR----AG--------LDEKVIELIKK-LK----RIVYVSCNPATLARD-LK 320 (352)
T ss_dssp -------------S-GGCTTESEEEE---T----T---------SCHHHHHHHHH-SS----EEEEEES-HHHHHHH-HH
T ss_pred -------------hhhhhcCCCEEEEcCCC----CC--------chHHHHHHHhc-CC----eEEEEECCHHHHHHH-HH
Confidence 00112469999997522 23 34677777764 32 255666777777666 44
Q ss_pred HHHHhc
Q 004354 691 RMKMVF 696 (759)
Q Consensus 691 ~l~~vF 696 (759)
.|.+-|
T Consensus 321 ~L~~~y 326 (352)
T PF05958_consen 321 ILKEGY 326 (352)
T ss_dssp HHHCCE
T ss_pred HHhhcC
Confidence 565543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.13 Score=52.41 Aligned_cols=108 Identities=17% Similarity=0.152 Sum_probs=53.3
Q ss_pred CCCCeEEEEcccccHHHHHHH---HhC-CCCcEEEEEcCHHH-HHHHHhhcCCCCCCCeEEEEccHHH--HHHhhcccCc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLH---ECM-PFVGIEAVELDLTM-LNLAEDYFGFTQDKSLKVHITDGIK--FVREMKSSSA 600 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~---~~~-p~~~i~~VEiDp~v-~~vA~~~Fgl~~~~rl~v~i~Da~~--~l~~~~~~~~ 600 (759)
-+|..|+.+|.--|+-..|.+ +.+ +..+|.+||||..- -..|.+.-.+ .+|++++.||..+ .+.....
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~--~~rI~~i~Gds~d~~~~~~v~~--- 105 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM--SPRITFIQGDSIDPEIVDQVRE--- 105 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG------TTEEEEES-SSSTHHHHTSGS---
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc--cCceEEEECCCCCHHHHHHHHH---
Confidence 367899999988664444333 233 66799999997533 3334444333 5899999999654 2222210
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 601 TDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
........+||.|.+-.-. + ...-|+.....+++|+.+||
T Consensus 106 ------------------------~~~~~~~vlVilDs~H~~~---------h--vl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 106 ------------------------LASPPHPVLVILDSSHTHE---------H--VLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp ------------------------S----SSEEEEESS----S---------S--HHHHHHHHHHT--TT-EEEE
T ss_pred ------------------------hhccCCceEEEECCCccHH---------H--HHHHHHHhCccCCCCCEEEE
Confidence 1113456799997754321 1 14456778999999999884
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.15 Score=53.06 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=33.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL 568 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~v 568 (759)
....+|.+|.|+|.++.+|.+. +..+|++||+++.++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 4468999999999999999987 44589999999977765
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.47 Score=48.40 Aligned_cols=113 Identities=12% Similarity=0.013 Sum_probs=66.9
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHH---hCCCeEEEEeCCHHHHHHHHHHhccC------------------
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD---AGFHGITNVDFSKVVISDMLRRNVRD------------------ 114 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~---~G~~~VtgIDiS~~~I~~a~~r~~~~------------------ 114 (759)
++...+.......+-++-|..||.|.+.--+.- ...++|+|.|+++.+++.|++++.-.
T Consensus 39 i~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~ 118 (246)
T PF11599_consen 39 IFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQ 118 (246)
T ss_dssp HHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHH
Confidence 344444443334567899999999998866532 23467999999999999998764200
Q ss_pred -------------------------CCCcEEEEeecccCC--------CcccEEEeCC----CChh-------HHHHHHH
Q 004354 115 -------------------------RSDMRWRVMDMTSMQ--------GGLDALMEPE----LGHK-------LGNQYLS 150 (759)
Q Consensus 115 -------------------------~~~i~f~~~D~~~~~--------gtfD~Ii~~~----~~~~-------~~~~~l~ 150 (759)
.......+.|+++.. ..-|+|+..- ...| -...||.
T Consensus 119 ~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~ 198 (246)
T PF11599_consen 119 YGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLN 198 (246)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHH
Confidence 023567888988854 4469999731 1112 2889999
Q ss_pred HHHHhcccCcEEEEEEcCc
Q 004354 151 EVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 151 ei~rvLkpGG~liiit~~~ 169 (759)
.++.+| |+.-+++++-.+
T Consensus 199 ~l~~vL-p~~sVV~v~~k~ 216 (246)
T PF11599_consen 199 SLAPVL-PERSVVAVSDKG 216 (246)
T ss_dssp HHHCCS--TT-EEEEEESS
T ss_pred HHHhhC-CCCcEEEEecCC
Confidence 999999 555555555443
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.31 Score=52.24 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=51.8
Q ss_pred CeEEEEcccccHHHHHHHHhCCCC-cEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhh
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREM 595 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~-~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~ 595 (759)
.-.+..=+|+|+-+..+...+|.. ++.++|-||..++.|++.+- +.++|+.++++.-.++-...
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~-~~~~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK-EFDGRVTLVHGNFANLAEAL 89 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh-ccCCcEEEEeCcHHHHHHHH
Confidence 567888899999999999888865 59999999999999999872 22689999998766554443
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.1 Score=46.03 Aligned_cols=99 Identities=23% Similarity=0.347 Sum_probs=70.7
Q ss_pred EEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 533 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 533 vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
|..||.-=|.||.+|.......++.++|+.+.-++.|++.. |+ .+++.+..+||++.+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l--~~~i~~rlgdGL~~l~~~-------------- 64 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL--EDRIEVRLGDGLEVLKPG-------------- 64 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG--GG--------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--cccEEEEECCcccccCCC--------------
Confidence 57899999999999999976679999999999999999876 65 579999999999987552
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
...|.|++ .|| ..-+-.++|+.....+...--||+.-.
T Consensus 65 -------------------e~~d~ivI--------AGM----GG~lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 65 -------------------EDVDTIVI--------AGM----GGELIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp -------------------G---EEEE--------EEE-----HHHHHHHHHHTGGGGTT--EEEEEES
T ss_pred -------------------CCCCEEEE--------ecC----CHHHHHHHHHhhHHHhccCCeEEEeCC
Confidence 23688888 233 122446788888777776667887643
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.25 Score=52.94 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=52.0
Q ss_pred eEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCC
Q 004354 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPE 139 (759)
Q Consensus 71 ~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~ 139 (759)
+++|+-||.|.++..+...|++.+.++|+++.+++..+.++. .. .++.|+.+.. +.+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~----~~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP----NK-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC----CC-CccCccccCchhhcCCCCCEEEeCC
Confidence 699999999999999999999889999999999987766652 22 5667776654 5689999765
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.18 Score=52.69 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=74.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
.+..+|+|||||.=-++........ ..|+|+||+..+++...+-....+++.++...|+...+ ...|+.+..-..+-
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 3478999999999999887665421 36999999999999887776667788899999987664 78999988543322
Q ss_pred H---HHHHHHHHHHhcccCcEEEEEEcCch----------hhhhhhcccc--CCCceEEEEEeCC
Q 004354 144 L---GNQYLSEVKRLLKSGGKFVCLTLAES----------HVLGLLFPKF--RFGWKMSVHAIPQ 193 (759)
Q Consensus 144 ~---~~~~l~ei~rvLkpGG~liiit~~~~----------~~~~~l~~~~--~~~w~v~~~~~~~ 193 (759)
. ....--++... -+..+++++|... ......++.. ..+|.++-.++++
T Consensus 184 le~q~~g~g~~ll~~--~~~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~~~~ 246 (251)
T PF07091_consen 184 LERQRRGAGLELLDA--LRSPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLTFGN 246 (251)
T ss_dssp HHHHSTTHHHHHHHH--SCESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEEETT
T ss_pred HHHHhcchHHHHHHH--hCCCeEEEeccccccccCccccccCHHHHHHHhcccCCceeeeeeccc
Confidence 2 11111111111 2455677776321 1112233332 3378877777765
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.5 Score=51.00 Aligned_cols=181 Identities=14% Similarity=0.126 Sum_probs=109.3
Q ss_pred HHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh---CC--CeEEEEeCCHH
Q 004354 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA---GF--HGITNVDFSKV 102 (759)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~---G~--~~VtgIDiS~~ 102 (759)
.+|--+.|.........|.|.+ .....++.+.+.. .+..+|.|..||+|.+.....+. .. ..++|.++++.
T Consensus 150 yE~ll~~fa~~~~k~~GEfyTP-~~v~~liv~~l~~---~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~ 225 (489)
T COG0286 150 YEYLLRKFAEAEGKEAGEFYTP-REVSELIVELLDP---EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDT 225 (489)
T ss_pred HHHHHHHHHHhcCCCCCccCCh-HHHHHHHHHHcCC---CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHH
Confidence 3455556665531222455554 4566667776653 46679999999999988766543 11 24999999999
Q ss_pred HHHHHHHHhccCCC--CcEEEEeecccCC--------CcccEEEeCCCC--------------------hh------HH-
Q 004354 103 VISDMLRRNVRDRS--DMRWRVMDMTSMQ--------GGLDALMEPELG--------------------HK------LG- 145 (759)
Q Consensus 103 ~I~~a~~r~~~~~~--~i~f~~~D~~~~~--------gtfD~Ii~~~~~--------------------~~------~~- 145 (759)
....++-+.--++. .+....+|-..-+ +.||.|++++.. .. ..
T Consensus 226 t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (489)
T COG0286 226 TYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSAD 305 (489)
T ss_pred HHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchH
Confidence 98888776533322 2455555543332 569999985410 00 03
Q ss_pred HHHHHHHHHhcccCcEEEEEEcCc--------hhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCCcc
Q 004354 146 NQYLSEVKRLLKSGGKFVCLTLAE--------SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSV 215 (759)
Q Consensus 146 ~~~l~ei~rvLkpGG~liiit~~~--------~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~~~ 215 (759)
..++..+...|+|||+..++.... ..+++.+++.. ..-.+...+...--..+.+..+.+++|.++..
T Consensus 306 ~af~~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~~~---~~~~ii~lp~~lF~~t~i~~~Il~l~k~k~~~ 380 (489)
T COG0286 306 LAFLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLEDN---LLEAIIGLPTGLFYNTGIPTNILFLTKNKPAE 380 (489)
T ss_pred HHHHHHHHHhcCCCceEEEEecCCcCcCCCchHHHHHHHHhcc---ceEEeeeCChhhcccCCCCeEEEEeecCCCCC
Confidence 788999999999999766664432 23444444411 11112222221112457889999999987654
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.11 Score=53.68 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=71.8
Q ss_pred CeEEEEcccccHHHHHHHHhCCC--CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPF--VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~--~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.++|.||.|.|.+..-|.+-.|+ ..|.++|-.|..+++-+++-++.+ .++...+-|.-.= ...
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~--~~~------------ 137 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSP--SLK------------ 137 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccch--hcc------------
Confidence 38999999999766656666666 899999999999999999988744 3444433331110 000
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
...+.+.+|+|.+ ++-- +++ +|... ...+.++.+.|+|||.+++==.++
T Consensus 138 ---------------~~~~~~svD~it~-IFvL---SAi--~pek~--~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 138 ---------------EPPEEGSVDIITL-IFVL---SAI--HPEKM--QSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred ---------------CCCCcCccceEEE-EEEE---ecc--ChHHH--HHHHHHHHHHhCCCcEEEEeeccc
Confidence 0112356777664 1110 111 12222 568999999999999998654444
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.5 Score=52.61 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCCCCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC-----CcccEE
Q 004354 64 PTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ-----GGLDAL 135 (759)
Q Consensus 64 ~~~~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~-----gtfD~I 135 (759)
+.+.++.+|||..+-.|.=+.+++.. +-..|++.|.+..-+...++++.. ...+......|...++ ++||-|
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCccccee
Q ss_pred EeCC------------------------CChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 136 MEPE------------------------LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 136 i~~~------------------------~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+... ...+...++|..+..++++||+++..|.+
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.19 Score=51.16 Aligned_cols=108 Identities=12% Similarity=0.187 Sum_probs=67.9
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh---cCCCC-CCCeEEEEccH-HHHHHhhcccCccccccc
Q 004354 532 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY---FGFTQ-DKSLKVHITDG-IKFVREMKSSSATDEMSV 606 (759)
Q Consensus 532 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~---Fgl~~-~~rl~v~i~Da-~~~l~~~~~~~~~~~~~~ 606 (759)
+||.||.|+|--+.+...++|.....--|+|+....--+.| .+++. -+.+.+=+.+. ..+...
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~------------ 95 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELP------------ 95 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccc------------
Confidence 69999999999999999999999999999999986444444 34421 11222211111 000000
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
.......||+|+. -+.-... |.. ....+++.+.+.|++||+|++-
T Consensus 96 -----------------~~~~~~~~D~i~~--~N~lHI~-----p~~-~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 96 -----------------APLSPESFDAIFC--INMLHIS-----PWS-AVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred -----------------cccCCCCcceeee--hhHHHhc-----CHH-HHHHHHHHHHHhCCCCCEEEEe
Confidence 0112468999987 1111110 111 2477999999999999999954
|
The function of this family is unknown. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.64 Score=49.83 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=41.1
Q ss_pred cCCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc
Q 004354 527 VGKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF 573 (759)
Q Consensus 527 ~~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~F 573 (759)
.-.|.+||.+|.|.|+.+..+...++. .++++||.++.++++|+.-+
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~ 78 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL 78 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence 347789999999999988888888874 38999999999999998876
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.11 Score=56.29 Aligned_cols=105 Identities=17% Similarity=0.113 Sum_probs=64.7
Q ss_pred CCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEE----eecccCC--CcccEEEeC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRV----MDMTSMQ--GGLDALMEP 138 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~-~i~f~~----~D~~~~~--gtfD~Ii~~ 138 (759)
...+|||+|.|.|.-...+.+. ....++-++.|+..-+..-.....-.+ ...|.. .|-..++ ..|++++..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 4567999999999988777654 124577788887543322221111111 122333 3333333 567777764
Q ss_pred CC-C----hhHHHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 139 EL-G----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 139 ~~-~----~~~~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
+. . +..+..+++.+..++.|||.++++.-+.+.-
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 41 1 1225669999999999999999999887743
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.58 Score=51.33 Aligned_cols=96 Identities=20% Similarity=0.152 Sum_probs=71.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....++|.||.+.|+.+..|.+. ..+|++||..|.--. +..+++++.+.+|+..|...
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~-------L~~~~~V~h~~~d~fr~~p~------------- 267 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQS-------LMDTGQVEHLRADGFKFRPP------------- 267 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHh-------hhCCCCEEEEeccCcccCCC-------------
Confidence 34578999999999999999987 359999997663322 23589999999999988432
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcC--cEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ--GLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~--Gilv~N~~~ 679 (759)
...+|+|++|+-.. | ...++.+.+-|..| .-+|+|+--
T Consensus 268 --------------------~~~vDwvVcDmve~---------P-----~rva~lm~~Wl~~g~cr~aIfnLKl 307 (357)
T PRK11760 268 --------------------RKNVDWLVCDMVEK---------P-----ARVAELMAQWLVNGWCREAIFNLKL 307 (357)
T ss_pred --------------------CCCCCEEEEecccC---------H-----HHHHHHHHHHHhcCcccEEEEEEEc
Confidence 25799999998543 2 35667777777655 478888843
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.16 Score=46.24 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=27.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF 99 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDi 99 (759)
.+.....|||||||.+..-|...|+. =.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCCC-cccccc
Confidence 35668999999999999999999986 678885
|
; GO: 0008168 methyltransferase activity |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.46 Score=53.21 Aligned_cols=102 Identities=18% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCCeEEEEcccccHHH-HHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLP-MFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~-~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+.++|..=.|.|.=. +++.+.-...+|++-|+||..+++.++.. ++. ++++++...||...+...
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~-~~~~~v~~~DAn~ll~~~--------- 118 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE-DERIEVSNMDANVLLYSR--------- 118 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S-GCCEEEEES-HHHHHCHS---------
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc-CceEEEehhhHHHHhhhc---------
Confidence 3467888777788543 56666433459999999999999999997 442 348999999999998632
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+||+|=+|.|.+ | ..||..+-+.++.||+|.+-.
T Consensus 119 -----------------------~~~fD~IDlDPfGS--------p------~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 119 -----------------------QERFDVIDLDPFGS--------P------APFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----------------------TT-EEEEEE--SS----------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------------cccCCEEEeCCCCC--------c------cHhHHHHHHHhhcCCEEEEec
Confidence 36899999998876 2 569999999999999999764
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.17 Score=54.93 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=69.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-------CCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeEEEEccHHHHHHhhccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC-------MPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSS 598 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~-------~p~~~i~~VEiDp~v~~vA~~~Fgl~--~~~rl~v~i~Da~~~l~~~~~~ 598 (759)
....+|+.-.+|+|.+...+... .+...+.++|+|+..+.+|+-.+-+. ......+..+|.+.--...
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~--- 121 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI--- 121 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT---
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc---
Confidence 34457999999999876655553 36679999999999999998765222 1233568888854321110
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCC-CCC----------CCCCCCcCCCCCChHHHHHHHHHcc
Q 004354 599 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD-SPD----------SSSGMTCPAADFVEGSFLLTVKDAL 667 (759)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~-s~d----------~~~g~scPp~~f~~~~fl~~~~~~L 667 (759)
...+||+|+.... ... ..-....++..-.+..|++.+.+.|
T Consensus 122 ----------------------------~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L 173 (311)
T PF02384_consen 122 ----------------------------KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLL 173 (311)
T ss_dssp ----------------------------ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTE
T ss_pred ----------------------------cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhc
Confidence 1367999998441 111 0000001122223456999999999
Q ss_pred CcCcEEEEEe
Q 004354 668 SEQGLFIVNL 677 (759)
Q Consensus 668 ~~~Gilv~N~ 677 (759)
+++|.+++=+
T Consensus 174 k~~G~~~~Il 183 (311)
T PF02384_consen 174 KPGGRAAIIL 183 (311)
T ss_dssp EEEEEEEEEE
T ss_pred ccccceeEEe
Confidence 9999766544
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.58 Score=49.66 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=69.3
Q ss_pred CCCeEEEEcccc---cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGA---GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~---G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
.-...|.||.|. |.+-...+...|..+|..||.||.|+.-|+.-+.-....+..++.+|.++-=.=+.. .....
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~-p~~~~-- 144 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAH-PEVRG-- 144 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCS-HHHHC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcC-HHHHh--
Confidence 557899999994 455455666689999999999999999999987532223499999998774222210 00000
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcC--CCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCCh
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDV--DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 682 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~--~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~ 682 (759)
.+ .-+...-++++.+ +-.|. =--...+..+++.|.||..|++.-.+.+.
T Consensus 145 ~l------------------D~~rPVavll~~vLh~v~D~----------~dp~~iv~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 145 LL------------------DFDRPVAVLLVAVLHFVPDD----------DDPAGIVARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp C--------------------TTS--EEEECT-GGGS-CG----------CTHHHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred cC------------------CCCCCeeeeeeeeeccCCCc----------cCHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 00 0135677887755 11221 11268999999999999999998877653
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.3 Score=45.50 Aligned_cols=61 Identities=15% Similarity=0.083 Sum_probs=40.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHh----------hcCCCCCCCeEEEEccHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED----------YFGFTQDKSLKVHITDGIK 590 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~----------~Fgl~~~~rl~v~i~Da~~ 590 (759)
.....+.||.|.|-+........+..+..+||+.|...++|+. ++|.. ..+++++.+|-++
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~-~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR-PGKVELIHGDFLD 112 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-TTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc-cccceeeccCccc
Confidence 3457899999999777666655555579999999999998864 23543 4578889888653
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 759 | ||||
| 2pxx_A | 215 | Human Putative Methyltransferase Mgc2408 Length = 2 | 5e-16 |
| >pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408 Length = 215 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 759 | |||
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 1e-40 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 7e-23 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 5e-10 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 2e-09 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 6e-09 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 1e-08 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 1e-07 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 6e-07 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 7e-07 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 7e-07 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 7e-07 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 1e-06 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 2e-06 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 2e-06 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 2e-06 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 3e-06 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 5e-06 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 5e-06 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 5e-06 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 5e-06 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 1e-05 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 1e-05 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 1e-05 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 2e-05 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 2e-05 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 3e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-04 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 4e-05 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 4e-05 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 5e-05 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 5e-05 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 6e-05 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 6e-05 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 1e-04 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 1e-04 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 1e-04 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 1e-04 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 1e-04 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 1e-04 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 1e-04 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 2e-04 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 2e-04 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 2e-04 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 3e-04 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 3e-04 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 4e-04 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 4e-04 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 6e-04 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 7e-04 |
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 1e-40
Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 32/207 (15%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+ E WD+ + ++W+ ++ R L + P +ILV GCGNS LS
Sbjct: 3 GYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPEL-----RPEDRILVLGCGNSALS 57
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM------------QGG 131
L+ GF +T+VD+S VV++ M +RW MD+ + +G
Sbjct: 58 YELFLGGFPNVTSVDYSSVVVAAMQACY-AHVPQLRWETMDVRKLDFPSASFDVVLEKGT 116
Query: 132 LDALMEPELGHKLG--------NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFG 183
LDAL+ E +Q LSEV R+L GG+F+ +T A H + + +G
Sbjct: 117 LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYG 176
Query: 184 WKMSVHAIPQKSSSEPSLQTFMVVADK 210
W + + + K
Sbjct: 177 WSLRHATY------GSGFHFHLYLMHK 197
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317 | Back alignment and structure |
|---|
Score = 99.3 bits (247), Expect = 7e-23
Identities = 32/194 (16%), Positives = 60/194 (30%), Gaps = 44/194 (22%)
Query: 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD 587
++ +G GA + + + P VELD + L+ ++F + +K+ + D
Sbjct: 88 ASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDD 147
Query: 588 GIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 647
+ A D++I DV +
Sbjct: 148 ARMVAES-------------------------------FTPASRDVIIRDVFAGAI---- 172
Query: 648 TCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ-ATKDMVISRMKMVFNHLF------ 700
+F F L+ GL++ N S ++ M VF H+
Sbjct: 173 --TPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIADPP 230
Query: 701 CLQLEEDVNLVLFG 714
L+ N++L G
Sbjct: 231 MLKGRRYGNIILMG 244
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 5e-10
Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 18/149 (12%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL 86
+ W+K + W ++ L+ +S P + LVPGCG +
Sbjct: 32 EEGGWEKCWEEEITP----WDQGRAT--PLIVHLVDT-SSLPLGRALVPGCGGGHDVVAM 84
Query: 87 YDAGFHGITNVDFSKVVISDMLRRNVRDRS---DMRWRVMDMTSM--QGGLDALMEPELG 141
+ +D S+ + + D+ + D + +
Sbjct: 85 ASPERF-VVGLDISESAL-AKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFF 142
Query: 142 HKLG----NQYLSEVKRLLKSGGKFVCLT 166
+ + + LLK G+ + L
Sbjct: 143 CAIEPEMRPAWAKSMYELLKPDGELITLM 171
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-09
Identities = 28/150 (18%), Positives = 46/150 (30%), Gaps = 22/150 (14%)
Query: 31 WDKFFTIRGIGDSFE---WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLY 87
WD+ F+ E + P +IL G R + L
Sbjct: 2 WDERFSQSEYVYGTEPNDFLVSVANQI-------------PQGKILCLAEGEGRNACFLA 48
Query: 88 DAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDA-----LMEPELGH 142
G+ +T VD S V ++ + + ++ DA + L
Sbjct: 49 SLGYE-VTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPS 107
Query: 143 KLGNQYLSEVKRLLKSGGKFVCLTLAESHV 172
L Q +V + LK GG F+ A +
Sbjct: 108 SLRQQLYPKVYQGLKPGGVFILEGFAPEQL 137
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 6e-09
Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 26/136 (19%)
Query: 45 EWYAEW----PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFS 100
DP LI + IL G G R + HL G I ++ +
Sbjct: 14 FDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQ-IEGLEPA 72
Query: 101 KVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDA---------LMEPELGHKLGNQY 148
+ ++ + + + +T + + EL
Sbjct: 73 ----TRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELP-----DA 123
Query: 149 LSEVKRLLKSGGKFVC 164
L ++ ++ GG +
Sbjct: 124 LVALRMAVEDGGGLLM 139
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 34/151 (22%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
E +D + E + + ++L CG + L +
Sbjct: 10 EYYDTIYR-----RRIERVKAEIDFVEEIFKEDAKR---EVRRVLDLACGTGIPTLELAE 61
Query: 89 AGFHGITNVDFSKVVISDML---RRNVRDRS-DMRWRVMDMTSM--QGGLDA-------- 134
G+ + +D + +ML RR ++R+ + + D+ + + DA
Sbjct: 62 RGYE-VVGLDLHE----EMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI 116
Query: 135 --LMEPELGHKLGNQYLSEVKRLLKSGGKFV 163
E +L + S+V LK GG F+
Sbjct: 117 MYFDEEDL-----RKLFSKVAEALKPGGVFI 142
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 28/126 (22%), Positives = 39/126 (30%), Gaps = 14/126 (11%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
YAE L +G +IL GCG +E + AGF + D S
Sbjct: 22 TAYAERQPRSATLTKFLGEL--PAGAKILELGCGAGYQAEAMLAAGFD-VDATDGSP--- 75
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHKLGN----QYLSEVKRLLKS 158
++ R R M + DA+ + L + R LK
Sbjct: 76 -ELAAE-ASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKP 133
Query: 159 GGKFVC 164
GG F
Sbjct: 134 GGLFYA 139
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 6e-07
Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 19/135 (14%)
Query: 43 SFEWYAE-WPQLRDPLISLIGAPT---SSPPP--QILVPGCGNSRLSEHLYDAGFHGITN 96
E YA+ W L + G + P +IL GCG R+ +L G +
Sbjct: 15 HSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQGHD-VLG 73
Query: 97 VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM---QGGLDAL-----MEPELGHKLGNQY 148
D ++ +D + RW V D++ + D + + L
Sbjct: 74 TDLD----PILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPA 129
Query: 149 LSEVKRLLKSGGKFV 163
L+ + R L + G+ V
Sbjct: 130 LANIHRALGADGRAV 144
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 7e-07
Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 30/152 (19%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+D F I + + ++ + +L G G L+ L
Sbjct: 14 HTYDSFVQGEDIQYKEVF-----AHYEDILEDVVNK---SFGNVLEFGVGTGNLTNKLLL 65
Query: 89 AGFHGITNVDFSKVVISDMLRR-NVRDRSDMRWRVMDMTSMQ--GGLDA---------LM 136
AG + ++ S+ +M + + D S + +D L
Sbjct: 66 AGRT-VYGIEPSR----EMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLT 120
Query: 137 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168
+ E +++ +LL GGK V
Sbjct: 121 DDEKN-----VAIAKYSQLLNKGGKIVFADTI 147
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 7e-07
Identities = 30/163 (18%), Positives = 46/163 (28%), Gaps = 24/163 (14%)
Query: 9 SSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSP 68
+ SS++A G+ +D + Y L+ +S
Sbjct: 2 AHSSATAGPQADYSGEIAEL--YDLVH-----QGKGKDYHREAADLAALVRRHSPKAAS- 53
Query: 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128
+L CG HL D+ + ++ S +DML R D DM
Sbjct: 54 ---LLDVACGTGMHLRHLADSFGT-VEGLELS----ADMLAIARRRNPDAVLHHGDMRDF 105
Query: 129 Q--GGLDA--LMEPELGHKLGN----QYLSEVKRLLKSGGKFV 163
A M +GH G L + G V
Sbjct: 106 SLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVV 148
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 7e-07
Identities = 20/162 (12%), Positives = 47/162 (29%), Gaps = 23/162 (14%)
Query: 24 DFTSKENWDKFF--TIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSR 81
D + W++++ T+ W A + + +P ++ CGN
Sbjct: 12 DINVADAWEQYWNKTLVNSTPVL-WDANVERAVVVDLPRFE-LLFNPELPLIDFACGNGT 69
Query: 82 LSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQGGLDALMEP- 138
++ L + +D S L +++ +R++D + E
Sbjct: 70 QTKFLSQFFPR-VIGLDVS----KSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIG 124
Query: 139 -----------ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169
+ + ++ LL G + L
Sbjct: 125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* Length = 314 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 49/178 (27%)
Query: 532 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYF-----GFTQDKSLKV 583
+ +++G G G L E + +E V++D ++ +A+ + G D +
Sbjct: 80 RVLIVGGGEGAT---LREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVL 136
Query: 584 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 643
I D ++ + R D++I +D D
Sbjct: 137 VIDDARAYLERTEE--------------------------------RYDVVI--IDLTD- 161
Query: 644 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIV---NLVSRSQATKDMVISRMKMVFNH 698
G PA F VK L+ G+ + ++ +V ++ F +
Sbjct: 162 PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRY 219
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 28/146 (19%), Positives = 41/146 (28%), Gaps = 32/146 (21%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
+D F+ RG YA L+ SS +L CG EH
Sbjct: 12 YDLFYLGRGKD-----YAAEASDIADLVRSRTPEASS----LLDVACGTGTHLEHFTKEF 62
Query: 91 FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGG---------LDALM----E 137
++ S DML + D DM + G ++
Sbjct: 63 GD-TAGLELS----EDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTT 117
Query: 138 PELGHKLGNQYLSEVKRLLKSGGKFV 163
EL ++ L+ GG V
Sbjct: 118 EEL-----GAAVASFAEHLEPGGVVV 138
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 30/189 (15%), Positives = 58/189 (30%), Gaps = 47/189 (24%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENW-DKFFT-----IRGIGDSFEWYAEWPQLR 54
M + + + A LL ++G+ ++ D+ + D E+
Sbjct: 20 MSNQLERGPVRTPHADVLLASVGERGVLCDFYDEGAADTYRDLIQDADGTSEAREFATRT 79
Query: 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML------ 108
P +L G RL+ D G+ +T ++ S + +L
Sbjct: 80 GP-----------VSGPVLELAAGMGRLTFPFLDLGWE-VTALELS----TSVLAAFRKR 123
Query: 109 --RRNVRDRSDMRWRVMDMTSMQ------------GGLDALMEPELGHKLGNQYLSEVKR 154
R DM++ G ++ L E + + V+
Sbjct: 124 LAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSINELDEADR-----RGLYASVRE 178
Query: 155 LLKSGGKFV 163
L+ GGKF+
Sbjct: 179 HLEPGGKFL 187
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 12/156 (7%)
Query: 20 QTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGN 79
+ + F E+ +K + + W I ++L GCG+
Sbjct: 5 ECMTKFNWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGD 64
Query: 80 SRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQ---GGLDA 134
+ L G+ VD S M++ + + D+ + D++S+ +A
Sbjct: 65 GYGTYKLSRTGYK-AVGVDIS----EVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEA 119
Query: 135 LMEPELGHKLGN--QYLSEVKRLLKSGGKFVCLTLA 168
+M + L+E+KR+LKS G L
Sbjct: 120 IMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILG 155
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 27/146 (18%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
+DK + Y +W L CG L+E+L
Sbjct: 10 YDKLI------RADVDYKKWSDFIIEKCVENNLVFDD----YLDLACGTGNLTENLCPKF 59
Query: 91 FHGITNVDFSKVVISDML---RRNVRDRS-DMRWRVMDMT--SMQGGLDALMEP--ELGH 142
+ VD S+ +ML R + R D++ ++ D + +
Sbjct: 60 KN-TWAVDLSQ----EMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114
Query: 143 KLGN----QYLSEVKRLLKSGGKFVC 164
+ + +Y V LK GG F+
Sbjct: 115 IIDSDDLKKYFKAVSNHLKEGGVFIF 140
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* Length = 304 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 47/151 (31%)
Query: 532 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYFGFT----QDKSLKVH 584
+ ++IG G G + L E + +E V++D ++ ++ +F D V
Sbjct: 98 RVLIIGGGDGGV---LREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVR 154
Query: 585 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS 644
+ DG+ FVR+ + D++I +D+ D +
Sbjct: 155 VGDGLAFVRQ-------------------------------TPDNTYDVVI--IDTTDPA 181
Query: 645 SGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675
PA+ +F V L G+
Sbjct: 182 G----PASKLFGEAFYKDVLRILKPDGICCN 208
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-06
Identities = 38/174 (21%), Positives = 63/174 (36%), Gaps = 35/174 (20%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+ + + F +S E+ + L L+ + ++L CG S L D
Sbjct: 4 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYM-----KKRGKVLDLACGVGGFSFLLED 58
Query: 89 AGFHGITNVDFSKVVISDML---RRNVRDR-SDMRWRVMDMTSM------------QGGL 132
GF + VD S+ DM+ R + R S++ + V D + +
Sbjct: 59 YGFE-VVGVDISE----DMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 113
Query: 133 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKM 186
EL NQ EV+R+LK GKF+ L L P+ + +
Sbjct: 114 VHFEPLEL-----NQVFKEVRRVLKPSGKFIMYF----TDLRELLPRLKESLVV 158
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Length = 296 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 41/121 (33%)
Query: 559 VELDLTMLNLAEDYFGFT----QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITS 614
E+D ++ A Y T D ++ I +G ++VR+ K+
Sbjct: 120 CEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKN----------------- 162
Query: 615 NNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674
D++I +DS D ++G F DAL E G+F
Sbjct: 163 ---------------EFDVII--IDSTDPTAG---QGGHLFTEEFYQACYDALKEDGVFS 202
Query: 675 V 675
Sbjct: 203 A 203
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 26/135 (19%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
+ ++ Q + L+ L+ P IL GCG +L+E + +G + D +
Sbjct: 37 DKHSFVWQYGEDLLQLLNP---QPGEFILDLGCGTGQLTEKIAQSGAE-VLGTDNA---- 88
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSMQ--GGLD------ALM---EPELGHKLGNQYLSEVK 153
+ M+ + ++ + + V D + + LD L EPE ++ +
Sbjct: 89 ATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSNAMLHWVKEPE-------AAIASIH 141
Query: 154 RLLKSGGKFVCLTLA 168
+ LKSGG+FV
Sbjct: 142 QALKSGGRFVAEFGG 156
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 19/155 (12%), Positives = 43/155 (27%), Gaps = 35/155 (22%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+D F + P + L + + +L G + HL
Sbjct: 20 SEYDATF-------VPYMDSAAPAALERLRAG------NIRGDVLELASGTGYWTRHLSG 66
Query: 89 AGFHGITNVDFSKVVISDMLRR-NVRDRSDMRWRVMDMTSMQ--GGLDALM--------- 136
+T +D S ++M+ ++ +R D+ DA+
Sbjct: 67 LADR-VTALDGS----AEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVP 121
Query: 137 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 171
+ + V+ + GG + + +
Sbjct: 122 DDRFE-----AFWESVRSAVAPGGVVEFVDVTDHE 151
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 44/174 (25%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
++++F + F + +E ++ L P + + G G R + L
Sbjct: 22 NEYERWFLVH----RFAYLSELQAVKCLL----------PEGRGVEIGVGTGRFAVPLKI 67
Query: 89 AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS------------MQGGLDALM 136
V+ S+ M R R + + M + +
Sbjct: 68 K-----IGVEPSE----RMAEI-ARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVD 116
Query: 137 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHA 190
+PE + L E R+LK GG + + LG + K + +A
Sbjct: 117 DPE-------RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNA 163
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 41/158 (25%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
W + IGD+ AE+ + L+ L+ ++L CG S L + G
Sbjct: 31 WQLY-----IGDTRSRTAEY---KAWLLGLLRQH---GCHRVLDVACGTGVDSIMLVEEG 79
Query: 91 FHGITNVDFSKVVISDML---RRNVRDR-----------SDMRWRVMDMT-SMQGGLDA- 134
F +T+VD S ML + +R + W +D G DA
Sbjct: 80 FS-VTSVDAS----DKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 134
Query: 135 ---------LMEPELGHKLGNQYLSEVKRLLKSGGKFV 163
L + + L + +++ GG V
Sbjct: 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 15/160 (9%)
Query: 39 GIGDSFEWYAE-WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNV 97
IG + ++ + +I+L+ P I G G S L + G + V
Sbjct: 7 SIGKQYSQTRVPDIRIVNAIINLLNLP---KGSVIADIGAGTGGYSVALANQGLF-VYAV 62
Query: 98 DFSKVVISDMLRRNVRDRSDMRWRVMDMTSM---QGGLDALMEPELGHKLGN--QYLSEV 152
+ S M ++ + W ++ +D ++ H + + E+
Sbjct: 63 EPS----IVMRQQ-AVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEM 117
Query: 153 KRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 192
+R+++ G + L+ F F W+ ++ +P
Sbjct: 118 QRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLP 157
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)
Query: 32 DKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF 91
D T+ +++++ ++ A P ++L GCG R S +L G+
Sbjct: 84 DLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGY 143
Query: 92 HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QGGLDALMEPELGH----KLG 145
+T+ D ++ I+ + ++ ++ + D+ + Q D ++ + +
Sbjct: 144 D-VTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTVVFMFLNRERV 202
Query: 146 NQYLSEVKRLLKSGGKFVCLTLAESHVLG 174
+ +K GG + + + +
Sbjct: 203 PSIIKNMKEHTNVGGYNLIVAAMSTDDVP 231
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 4e-05
Identities = 77/540 (14%), Positives = 149/540 (27%), Gaps = 165/540 (30%)
Query: 189 HAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEALESENQ- 247
H I K + +L+ F + K+ V F L N F + +++E +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMV-----QKFVEEVLR--INYKF-LMSPIKTEQRQ 104
Query: 248 ---TRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLDAR 304
R Y D LY+ D Q+ AK ++ R +
Sbjct: 105 PSMMTRMYIEQRDRLYN--DNQVFAKYNV------SRLQ--------------------- 135
Query: 305 ENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVE----SSKAARLIMVLLDTSHASAS 360
P + + L + ++++ S K + V L
Sbjct: 136 ---------------PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS------- 173
Query: 361 MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYE 420
++Q + + L + + M+ +++Q + T
Sbjct: 174 -YKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-------KLLYQIDPNWT----------S 215
Query: 421 NVDPEFSRIWPSEDLK--FRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSK 478
D + ++ RRL+ + LL+ +V+ + + +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSK----PYENCLLVLL------NVQNAKAWNAFNLS 265
Query: 479 SKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGL 538
K T R + + L S H T E KS+ +
Sbjct: 266 CKILLTTRFKQVT-DFLSAATTTHISLDHH--SMTLTP----DEV-----KSLLLKYLDC 313
Query: 539 GAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHIT--DGIKFVREMK 596
LP + P L++ +AE S++ + D K V K
Sbjct: 314 RPQDLPREVLTTNPRR--------LSI--IAE---------SIRDGLATWDNWKHVNCDK 354
Query: 597 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 656
++ E S+ N + R + + P
Sbjct: 355 LTTII-ESSL---NVLEPAEYRKMFDRLS-------VFPPSAHIPTI------------- 390
Query: 657 GSFLLTV--KDALSEQGLFIVN-LVSRSQATKDMVISRMKMVFNHL---FCLQLEEDVNL 710
LL++ D + + +VN L S K + + ++LE + L
Sbjct: 391 ---LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP--KESTISIPSIYLELKVKLENEYAL 445
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 4e-04
Identities = 59/459 (12%), Positives = 119/459 (25%), Gaps = 184/459 (40%)
Query: 18 LLQTLGDFTSKENWDKF-------FTIRGIG---------------DSFEWYAEWPQLRD 55
LL L + + + W+ F T R D +++
Sbjct: 247 LL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR 115
L+ + P ++ + ++ +I++ +R +
Sbjct: 306 LLLKYLDCRPQDLPREV----LTTNPRR----------LS-------IIAESIRDGL-AT 343
Query: 116 SDMRWRVMD----MTSMQGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 171
D W+ ++ T ++ L+ L EP E +++ L+
Sbjct: 344 WD-NWKHVNCDKLTTIIESSLNVL-EPA-----------EYRKMFDR--------LS--- 379
Query: 172 VLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCN 231
+FP S H IP ++ S V+ V + SL
Sbjct: 380 ----VFPP-------SAH-IP--------TILLSLIWFDVIKSDVMVVVNKLHKYSL-VE 418
Query: 232 KNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNL-----------SPGC 280
K + S+ + L K ++N +
Sbjct: 419 K---------------------QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 281 RFE---LILGGEGDFCFSY-----------------RAVLLDARENSGPFMYNCGVFIVP 320
F+ LI + +S+ R V LD R F+
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR------------FLEQ 505
Query: 321 KTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKD 380
K R + W S ++ L + + LV +
Sbjct: 506 KIRH-------DSTAWNASGS-----ILNTLQQLKFYKPYICDNDPKYERLVNAI----- 548
Query: 381 DQGAQIPFMM-AGDGI---KHRNVVHQATSSLTGPIIVE 415
+ F+ + + K+ +++ A + I E
Sbjct: 549 -----LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 4e-05
Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 28/150 (18%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
++++ + + + EW +L+ L +L GCG + + G
Sbjct: 14 FEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQK-------TVLDLGCGFGWHCIYAAEHG 66
Query: 91 FHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQGGLD---------ALM-EP 138
+ +D S ML + + + + + D AL
Sbjct: 67 AKKVLGIDLS----ERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122
Query: 139 ELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168
+V LKS G F+
Sbjct: 123 SFD-----DICKKVYINLKSSGSFIFSVEH 147
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 35/140 (25%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR----------NVRDRSDMRWRVMDM 125
GCG+ ++S L G+ +T +D + + +R N + ++V +
Sbjct: 38 GCGSGKISLELASKGYS-VTGIDINS----EAIRLAETAARSPGLNQKTGGKAEFKVENA 92
Query: 126 TSM------------QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 173
+S+ Q L ++ +P+ ++ + EV R+LK G +
Sbjct: 93 SSLSFHDSSFDFAVMQAFLTSVPDPKER----SRIIKEVFRVLKPGAYLYLVEF--GQNW 146
Query: 174 GLLFPKFRFGWKMSVHAIPQ 193
L + R+ +
Sbjct: 147 HLKLYRKRYLH--DFPITKE 164
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* Length = 304 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 54/178 (30%)
Query: 532 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYF-----GFTQDKSLKV 583
K ++IG G G + L E + +E+ E+D ++ +++ + G+ L +
Sbjct: 98 KVLIIGGGDGGV---LREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY-SSSKLTL 153
Query: 584 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 643
H+ DG +F+++ + D++I DS D
Sbjct: 154 HVGDGFEFMKQNQ--------------------------------DAFDVII--TDSSDP 179
Query: 644 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIV---NLVSRSQATKDMVISRMKMVFNH 698
PA + S+ +K AL E G+ K+M + +F
Sbjct: 180 MG----PAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMR-QFCQSLFPV 232
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Length = 334 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 49/152 (32%)
Query: 532 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYF-----GFTQDKSLKV 583
K +VIG G G + L E IE E+D ++++++ +F G+ +D + +
Sbjct: 123 KVLVIGGGDGGV---LREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY-EDPRVNL 178
Query: 584 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 643
I DG+ F++ A+ D +I+D P
Sbjct: 179 VIGDGVAFLKN-------------------------------AAEGSYDAVIVDSSDPIG 207
Query: 644 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675
PA + E F +V AL G+
Sbjct: 208 ------PAKELFEKPFFQSVARALRPGGVVCT 233
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 6e-05
Identities = 29/168 (17%), Positives = 49/168 (29%), Gaps = 34/168 (20%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+ W R ++ I P ++L GCG L L D
Sbjct: 22 QAWIDAV--RHGAIESRRQVTDQ----AILLAILGR---QPERVLDLGCGEGWLLRALAD 72
Query: 89 AGFHGITNVDFSKVVISDML----RRNVRDRSDMRWRVMDMTSMQ--GGLD------ALM 136
G VD ++ + + + + D AL+
Sbjct: 73 RGIE-AVGVDGD----RTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL 127
Query: 137 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 184
++ + LS ++ LL GG V TL H + ++ GW
Sbjct: 128 HQDII-----ELLSAMRTLLVPGGALVIQTL---HPWSVADGDYQDGW 167
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 26/128 (20%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM-- 125
P ++L G G + S L + GF + VD SK +ML R++
Sbjct: 54 NPCRVLDLGGGTGKWSLFLQERGFE-VVLVDPSK----EMLEVA-REKGVKNVVEAKAED 107
Query: 126 -----------TSMQGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 174
++ L + + SE++R+L G + L
Sbjct: 108 LPFPSGAFEAVLALGDVLSYVENKDKA-------FSEIRRVLVPDGLLIATVDNFYTFLQ 160
Query: 175 LLFPKFRF 182
+ K +
Sbjct: 161 QMIEKDAW 168
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 30/160 (18%), Positives = 47/160 (29%), Gaps = 31/160 (19%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLI---------SLIGAPTSSPPPQILVPGC 77
S + F ++ + R I S+ A + P IL G
Sbjct: 2 SLSEIKRKFD--------AVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGA 53
Query: 78 GNSRLSEHLYDAGFHG-ITNVDFSKVVISDML---RRNVRDRSDMRWRVMDMTSMQ--GG 131
G LS L + T VD S+ ML + R +++ D +
Sbjct: 54 GTGLLSAFLMEKYPEATFTLVDMSE----KMLEIAKNRFRGNLKVKYIEADYSKYDFEEK 109
Query: 132 LDA----LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167
D L L + + +LK G F+ L
Sbjct: 110 YDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL 149
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 28/138 (20%)
Query: 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101
+ + AEWP LR L + G +I+ GCG ++ G + +D S
Sbjct: 24 EGLDGAAEWPALRAMLPEVGGL-------RIVDLGCGFGWFCRWAHEHGASYVLGLDLS- 75
Query: 102 VVISDMLR--RNVRDRSDMRWRVMDMTSM---QGGLD------ALM-EPELGHKLGNQYL 149
ML R + + + D+ + Q D AL ++ +
Sbjct: 76 ---EKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVA-----RLF 127
Query: 150 SEVKRLLKSGGKFVCLTL 167
V + L GG FV T
Sbjct: 128 RTVHQALSPGGHFVFSTE 145
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* Length = 283 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 44/122 (36%)
Query: 559 VELDLTMLNLAEDYF-----GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 613
E+D T++ +++ YF G+ +DK + V I D KF+ + +
Sbjct: 108 CEIDETVIEVSKIYFKNISCGY-EDKRVNVFIEDASKFLENVTN---------------- 150
Query: 614 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 673
D++I VDS D PA +F + +AL G
Sbjct: 151 ----------------TYDVII--VDSSDPIG----PAETLFNQNFYEKIYNALKPNGYC 188
Query: 674 IV 675
+
Sbjct: 189 VA 190
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Length = 314 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 50/152 (32%)
Query: 532 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYF-----GFTQDKSLKV 583
+ ++IG G G + L E + +E E+D ++++A+ + GF L +
Sbjct: 111 RVLIIGGGDGGI---LREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF-SHPKLDL 166
Query: 584 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 643
DG +F++ K D++I D P
Sbjct: 167 FCGDGFEFLKNHK--------------------------------NEFDVIITDSSDPVG 194
Query: 644 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675
PA S+ ++DAL E G+
Sbjct: 195 ------PAESLFGQSYYELLRDALKEDGILSS 220
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125
P + L GCGN R S +L G+ + D + + I + R ++ RV+D+
Sbjct: 32 KPGKTLDLGCGNGRNSLYLAANGYD-VDAWDKNAMSI-ANVERIKSIENLDNLHTRVVDL 89
Query: 126 TSM--QGGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCLT 166
++ D ++ + K ++ ++R K GG + +
Sbjct: 90 NNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Length = 275 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 42/121 (34%)
Query: 559 VELDLTMLNLAEDYFGFT----QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITS 614
V++D ++ ++ + D + V + DG + + +
Sbjct: 105 VDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSE------------------ 146
Query: 615 NNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674
+ D+++ VDS + PA + F + AL E G+F+
Sbjct: 147 --------------NQYDVIM--VDSTEPVG----PAVNLFTKGFYAGIAKALKEDGIFV 186
Query: 675 V 675
Sbjct: 187 A 187
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 19/156 (12%), Positives = 51/156 (32%), Gaps = 23/156 (14%)
Query: 66 SSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125
S+ +L G G ++ + ++ S + + + + + D+
Sbjct: 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDI 80
Query: 126 TSM------------QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 173
+ G + + + ++ + + E+KR+LK GG L
Sbjct: 81 RKLPFKDESMSFVYSYGTIFHMRKNDV-----KEAIDEIKRVLKPGGLACINFLTTKD-- 133
Query: 174 GLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVAD 209
++ G K+ Q E + +++ + +
Sbjct: 134 ----ERYNKGEKIGEGEFLQLERGEKVIHSYVSLEE 165
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML----RRNVRDRSDMRWRVM 123
P +I GCG + L D + +T VD S +ML + + + + V
Sbjct: 33 PGKRIADIGCGTGTATLLLAD-HYE-VTGVDLS----EEMLEIAQEKAMETNRHVDFWVQ 86
Query: 124 DMTSMQ--GGLDALMEP--ELGHKLGN----QYLSEVKRLLKSGGKFV 163
DM ++ +DA+ L + Q RLL GGK +
Sbjct: 87 DMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL 134
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* Length = 321 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 44/122 (36%)
Query: 559 VELDLTMLNLAEDYF-----GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 613
E+D T++ +++ YF G+ +DK + V I D KF+ + +
Sbjct: 146 CEIDETVIEVSKIYFKNISCGY-EDKRVNVFIEDASKFLENVTN---------------- 188
Query: 614 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 673
D++I VDS D PA +F + +AL G
Sbjct: 189 ----------------TYDVII--VDSSDPIG----PAETLFNQNFYEKIYNALKPNGYC 226
Query: 674 IV 675
+
Sbjct: 227 VA 228
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 13/133 (9%)
Query: 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKVVIS 105
+ LRD +++ + +L GCG + DA +D SK
Sbjct: 64 AGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK---- 119
Query: 106 DMLRRNVRDRSDMRWRVMDMTSM---QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 162
++ + + + V + +DA++ E+ R++K GG
Sbjct: 120 VAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAII-----RIYAPCKAEELARVVKPGGWV 174
Query: 163 VCLTLAESHVLGL 175
+ T H++ L
Sbjct: 175 ITATPGPRHLMEL 187
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Length = 281 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 49/127 (38%)
Query: 559 VELDLTMLNLAEDYF----------GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608
VE+D ++ +++D + + K+ I DG +F++
Sbjct: 104 VEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-------------- 149
Query: 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALS 668
N D++I DS D PA F V DAL+
Sbjct: 150 -------------------NRGFDVII--ADSTDPVG----PAKVLFSEEFYRYVYDALN 184
Query: 669 EQGLFIV 675
G+++
Sbjct: 185 NPGIYVT 191
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 26/125 (20%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127
P +L G G L G V+ S+ ML R + W +
Sbjct: 36 PGESLLEVGAGTGYWLRRLPYPQKVG---VEPSE----AMLAVGRRRAPEATWVRAWGEA 88
Query: 128 ------------MQGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGL 175
+ L+ + + E L E +R+L+ GG V L
Sbjct: 89 LPFPGESFDVVLLFTTLEFVEDVERV-------LLEARRVLRPGGALVVGVLEALSPWAA 141
Query: 176 LFPKF 180
L+ +
Sbjct: 142 LYRRL 146
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 13/130 (10%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
+ E + L + + L GC +E L +T +D I
Sbjct: 32 NPF-ERERHTQLLRLSLSSG---AVSNGLEIGCAAGAFTEKLAPHCKR-LTVIDVMPRAI 86
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSM--QGGLDALMEPELGHKLGN-----QYLSEVKRLLK 157
+ + S + W D+ D ++ E+ + L + + + ++L
Sbjct: 87 -GRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLA 145
Query: 158 SGGKFVCLTL 167
GG V +
Sbjct: 146 PGGHLVFGSA 155
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 12/106 (11%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDR---SDMRWR 121
+ +I GCG + L A + IT +D I ++ N ++
Sbjct: 45 TDDAKIADIGCGTGGQTLFL--ADYVKGQITGIDLFPDFI-EIFNENAVKANCADRVKGI 101
Query: 122 VMDMTSMQ---GGLDALMEPELGHKLGN-QYLSEVKRLLKSGGKFV 163
M ++ LD + + +G + ++E + LK GG
Sbjct: 102 TGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIA 147
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 7e-04
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 12/106 (11%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDR---SDMRWR 121
+ I GCG + L AG +T +DF I D+ RN R + +
Sbjct: 45 TEKSLIADIGCGTGGQTMVL--AGHVTGQVTGLDFLSGFI-DIFNRNARQSGLQNRVTGI 101
Query: 122 VMDMTSMQ---GGLDALMEPELGHKLGN-QYLSEVKRLLKSGGKFV 163
V M + LD + + +G + L+E ++ LK GG
Sbjct: 102 VGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLA 147
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 759 | |||
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.93 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.9 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 99.86 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.85 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.85 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.83 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.8 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.79 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.79 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.77 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.77 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.76 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.71 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.71 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.7 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.68 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.68 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.63 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.61 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.6 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.54 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.52 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.51 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.51 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.51 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.5 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.49 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.49 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.48 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.48 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.48 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.47 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.47 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.47 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.47 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.46 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.46 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.46 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.45 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.45 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.45 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.45 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.45 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.44 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.44 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.44 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.44 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.43 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.43 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.43 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.43 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.43 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.42 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.42 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.42 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.42 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.42 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.42 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.41 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.41 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.41 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.41 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.39 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.39 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.39 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.39 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.39 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.38 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.38 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.38 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.38 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.38 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.38 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.37 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.37 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.37 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.37 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.37 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.37 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.36 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.36 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.36 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.36 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.35 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.34 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.34 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.34 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.34 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.34 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.34 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.34 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.34 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.33 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.33 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.33 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.33 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.33 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.33 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.33 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.32 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.32 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.32 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.32 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.32 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.31 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.3 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.29 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.29 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.29 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.29 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.28 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.28 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.27 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.27 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.27 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.27 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.26 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.26 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.25 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.25 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.24 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.23 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.23 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.23 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.23 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.23 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.22 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.21 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.21 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.21 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.21 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.21 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.21 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.2 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.19 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.19 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.19 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.19 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.19 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.18 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.18 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.18 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.18 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.17 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.17 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.17 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.16 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.16 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.16 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.16 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.16 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.15 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.15 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.15 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.14 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.14 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.13 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.13 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.12 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.12 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.11 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.11 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.11 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.11 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.1 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.1 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.1 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.1 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.1 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.09 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.09 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.09 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.09 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.08 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.08 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.08 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.07 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.07 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.07 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.07 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.07 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.07 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.07 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.06 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.06 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.05 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.05 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.05 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.05 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.04 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.04 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.04 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.03 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.03 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.03 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.03 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.02 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.02 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.02 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.02 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.02 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.02 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.02 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.01 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.01 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.0 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.0 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.0 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.99 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.99 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.99 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.99 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.98 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.98 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.97 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.97 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.96 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.96 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.96 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.96 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.96 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.95 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.95 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.95 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.95 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.95 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.95 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.95 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.95 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.94 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.94 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.94 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.94 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.94 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.93 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.93 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.93 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.93 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.92 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.92 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.92 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.92 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.91 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.91 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.91 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.9 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.9 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.9 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.89 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.89 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.89 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.88 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.88 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.88 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.88 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.87 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.87 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.86 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.85 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.85 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.84 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.84 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.84 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.84 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.84 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.82 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.82 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.82 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.81 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.8 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.8 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.8 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.8 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.79 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.79 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.79 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.78 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.77 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.77 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.77 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.76 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.75 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.74 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.73 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 98.73 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.72 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.72 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.71 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.71 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.7 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.7 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.7 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.69 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.69 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.69 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.68 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.68 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.68 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.68 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.68 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.67 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.67 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.67 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.67 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.66 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.65 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.65 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.65 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.65 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.64 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.63 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.63 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.63 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.62 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.62 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.62 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.62 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.61 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.61 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.6 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.6 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.6 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.6 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.58 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.58 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.58 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.57 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.57 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.57 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.57 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.57 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.57 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.56 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.55 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.55 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.55 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.55 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.54 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.54 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.53 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.53 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.53 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.53 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.53 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.53 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.53 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.52 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.52 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.51 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.51 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.51 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.51 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.51 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.51 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.51 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.51 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.51 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.5 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.5 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.5 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.5 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.5 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.49 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.49 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.49 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.48 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.48 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.48 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.48 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.48 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.47 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.47 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.47 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.47 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.47 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.47 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.47 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.45 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.45 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.45 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.44 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.44 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.44 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.44 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.43 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.43 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.43 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.42 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.42 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.42 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.41 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.41 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.41 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.41 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.4 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.4 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.4 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.39 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.39 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.38 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.38 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.38 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.38 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.38 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.37 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.37 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.36 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.36 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.36 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.35 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.35 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.34 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.34 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.34 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.34 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.32 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.32 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.32 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.32 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.32 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.32 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.32 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.32 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.32 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.32 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.31 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.31 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.31 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.31 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.31 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.31 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.31 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.3 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.3 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.3 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.3 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.3 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.3 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.29 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.29 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.29 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.29 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.29 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.28 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.28 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.28 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.27 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.27 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.27 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.26 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.26 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.25 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.25 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.25 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.24 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.24 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.24 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.24 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.24 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.24 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.23 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.22 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.22 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.21 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.21 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.21 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.21 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.21 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.2 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.2 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.2 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.19 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.19 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.18 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.17 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.15 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.15 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.15 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.15 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.14 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.14 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.13 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.12 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.12 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.1 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 98.1 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.1 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.1 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.09 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.09 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.09 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.08 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.07 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.07 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.06 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.06 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.06 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.05 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.03 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.01 |
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-25 Score=236.15 Aligned_cols=181 Identities=20% Similarity=0.289 Sum_probs=151.6
Q ss_pred cCCccchHHHHHHHHHHhhh--hhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC
Q 004354 498 YHGYLASSYHMGIISGFTLI--SSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 575 (759)
Q Consensus 498 d~~~L~~~Y~~~m~~~l~l~--~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl 575 (759)
|+..+.++||+.|+..+.++ .+ ..+++.+||+||+|+|.++++|.+.+|..+|++|||||.|+++|+++|++
T Consensus 62 dP~~le~~Y~e~m~~~~~~l~~~~------p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~ 135 (317)
T 3gjy_A 62 QPQALEFEYMRWIATGARAFIDAH------QDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI 135 (317)
T ss_dssp CTTCCCSHHHHHHHHHHHHHHHHH------SCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC
T ss_pred CCcchhhHHHHHHHHHHHhhcccC------CCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc
Confidence 36678999999999876652 12 01223499999999999999999988999999999999999999999998
Q ss_pred CCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC
Q 004354 576 TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV 655 (759)
Q Consensus 576 ~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~ 655 (759)
..++|++++++||++|+.... ..+||+||+|++.... ++.+++
T Consensus 136 ~~~~rv~v~~~Da~~~l~~~~-------------------------------~~~fDvIi~D~~~~~~------~~~~L~ 178 (317)
T 3gjy_A 136 PRAPRVKIRVDDARMVAESFT-------------------------------PASRDVIIRDVFAGAI------TPQNFT 178 (317)
T ss_dssp CCTTTEEEEESCHHHHHHTCC-------------------------------TTCEEEEEECCSTTSC------CCGGGS
T ss_pred cCCCceEEEECcHHHHHhhcc-------------------------------CCCCCEEEECCCCccc------cchhhh
Confidence 778999999999999997643 3679999999877642 478899
Q ss_pred hHHHHHHHHHccCcCcEEEEEecCCC-hhHHHHHHHHHHHhcCceEEEeec------CCccEEEEEecCCCCC
Q 004354 656 EGSFLLTVKDALSEQGLFIVNLVSRS-QATKDMVISRMKMVFNHLFCLQLE------EDVNLVLFGLSSESCI 721 (759)
Q Consensus 656 ~~~fl~~~~~~L~~~Gilv~N~~~~~-~~~~~~v~~~l~~vF~~v~~~~~~------~~~N~Vl~a~~~~~~~ 721 (759)
+.+||+.++++|+|||+|++|+.+.. ......++.+|+++|+++..+... +..|.|++|++.+...
T Consensus 179 t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl~As~~plp~ 251 (317)
T 3gjy_A 179 TVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGSDTEFFS 251 (317)
T ss_dssp BHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEEEEESSCCCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEEEEECCCCCc
Confidence 99999999999999999999997543 345678899999999999888632 5689999999887543
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=219.27 Aligned_cols=168 Identities=20% Similarity=0.347 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQD 578 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----gl~~~ 578 (759)
+.||.+|+ +++|..+ ++|++|||||+|+|++++.+.++.+..+|++|||||.|+++|++|| |..+|
T Consensus 67 ~~YhE~l~-h~~l~~~--------p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~d 137 (294)
T 3o4f_A 67 FIYHEMMT-HVPLLAH--------GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDD 137 (294)
T ss_dssp HHHHHHHH-HHHHHHS--------SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGC
T ss_pred HHHHHHHH-HHHHhhC--------CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCC
Confidence 66887554 5566555 7899999999999999999999988789999999999999999998 33468
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHH
Q 004354 579 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 658 (759)
Q Consensus 579 ~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~ 658 (759)
+|++++++||++||++.. .+||+||+|++++.. |+..|++.+
T Consensus 138 pRv~v~~~Dg~~~l~~~~--------------------------------~~yDvIi~D~~dp~~------~~~~L~t~e 179 (294)
T 3o4f_A 138 PRFKLVIDDGVNFVNQTS--------------------------------QTFDVIISDCTDPIG------PGESLFTSA 179 (294)
T ss_dssp TTEEEEESCTTTTTSCSS--------------------------------CCEEEEEESCCCCCC------TTCCSSCCH
T ss_pred CcEEEEechHHHHHhhcc--------------------------------ccCCEEEEeCCCcCC------CchhhcCHH
Confidence 999999999999997643 689999999876532 578899999
Q ss_pred HHHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEe--ec---CCccEEEEEecCC
Q 004354 659 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LE---EDVNLVLFGLSSE 718 (759)
Q Consensus 659 fl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~---~~~N~Vl~a~~~~ 718 (759)
|++.|+++|+|||+++++..+. +......++++++++|+.+..+. ++ .+.....+|++..
T Consensus 180 Fy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~~~~~vPty~~g~w~f~~as~~~ 246 (294)
T 3o4f_A 180 FYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDND 246 (294)
T ss_dssp HHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEEEEECCTTSSSSCEEEEEEESCT
T ss_pred HHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCceeeeeeeeccCCCcceeheeEECCC
Confidence 9999999999999999987553 34455677899999999875554 33 3455677788765
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-21 Score=207.55 Aligned_cols=174 Identities=12% Similarity=0.110 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC--------
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-------- 575 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-------- 575 (759)
..||++|+.. +++. ..+++|||||+|+|++++.+.++.+ .+|++|||||+|+++|++||..
T Consensus 190 ~~Y~e~l~h~-~l~~---------~~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~ 258 (381)
T 3c6k_A 190 LAYTRAIMGS-GKED---------YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDN 258 (381)
T ss_dssp HHHHHHHTTT-TCCC---------CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSS
T ss_pred HHHHHHHHHH-Hhhc---------CCCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhcc
Confidence 3588877654 3333 3468999999999999999988754 7999999999999999999843
Q ss_pred CCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC
Q 004354 576 TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV 655 (759)
Q Consensus 576 ~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~ 655 (759)
+.++|++++++||++||++.+. ...+||+||+|+++...+.+...|+..++
T Consensus 259 pr~~rv~vii~Da~~fl~~~~~-----------------------------~~~~yDvIIvDl~D~~~s~~p~g~a~~Lf 309 (381)
T 3c6k_A 259 LKGDCYQVLIEDCIPVLKRYAK-----------------------------EGREFDYVINDLTAVPISTSPEEDSTWEF 309 (381)
T ss_dssp SEETTEEEEESCHHHHHHHHHH-----------------------------HTCCEEEEEEECCSSCCCCC----CHHHH
T ss_pred ccccceeeehHHHHHHHHhhhh-----------------------------ccCceeEEEECCCCCcccCcccCcchHHH
Confidence 2357899999999999987641 13679999999987654444445667889
Q ss_pred hHHHHHHHHHccCcCcEEEEEecCC-ChhHHHHHHHHHHHhcCceEEE----eecC--CccEEEEEecC
Q 004354 656 EGSFLLTVKDALSEQGLFIVNLVSR-SQATKDMVISRMKMVFNHLFCL----QLEE--DVNLVLFGLSS 717 (759)
Q Consensus 656 ~~~fl~~~~~~L~~~Gilv~N~~~~-~~~~~~~v~~~l~~vF~~v~~~----~~~~--~~N~Vl~a~~~ 717 (759)
+.+||+.|+++|+|+|+++.+.-+. .......+.++|+++|+.+... .++. +.....+|++.
T Consensus 310 t~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~ 378 (381)
T 3c6k_A 310 LRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKK 378 (381)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEECC
Confidence 9999999999999999999875433 2344567789999999976322 2332 34556677664
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-20 Score=195.34 Aligned_cols=167 Identities=17% Similarity=0.290 Sum_probs=134.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQD 578 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----gl~~~ 578 (759)
+.||..|. ++++..+ +.+.+||+||+|+|.++..+..+.|..+|++||+||.|+++|+++| ++ .+
T Consensus 59 ~~y~e~l~-~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~-~~ 128 (275)
T 1iy9_A 59 FVYHEMVA-HVPLFTH--------PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL-DD 128 (275)
T ss_dssp HHHHHHHH-HHHHHHS--------SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT-TS
T ss_pred hHHHHHHH-HHHHhhC--------CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc-CC
Confidence 67887544 5554433 4678999999999999999998877789999999999999999998 44 57
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHH
Q 004354 579 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 658 (759)
Q Consensus 579 ~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~ 658 (759)
+|++++++||.+++.... .+||+||+|+.... .|+..+++.+
T Consensus 129 ~rv~v~~~D~~~~l~~~~--------------------------------~~fD~Ii~d~~~~~------~~~~~l~~~~ 170 (275)
T 1iy9_A 129 PRVDVQVDDGFMHIAKSE--------------------------------NQYDVIMVDSTEPV------GPAVNLFTKG 170 (275)
T ss_dssp TTEEEEESCSHHHHHTCC--------------------------------SCEEEEEESCSSCC------SCCCCCSTTH
T ss_pred CceEEEECcHHHHHhhCC--------------------------------CCeeEEEECCCCCC------CcchhhhHHH
Confidence 899999999999987532 57999999886532 2578889999
Q ss_pred HHHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEe--ecC---CccEEEEEecCC
Q 004354 659 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE---DVNLVLFGLSSE 718 (759)
Q Consensus 659 fl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~---~~N~Vl~a~~~~ 718 (759)
|++.++++|+|||+|++|..+. +......++++++++|+++..+. ++. +.+.+++|++..
T Consensus 171 ~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~ask~~ 237 (275)
T 1iy9_A 171 FYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKY 237 (275)
T ss_dssp HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESSC
T ss_pred HHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEEeeCCC
Confidence 9999999999999999997553 45667788999999999866554 332 346677888753
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=189.42 Aligned_cols=180 Identities=27% Similarity=0.542 Sum_probs=149.8
Q ss_pred cCCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHH
Q 004354 23 GDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (759)
Q Consensus 23 ~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~ 102 (759)
++|.+.+||+++|........++|+..+..+...+..++ .++.+|||+|||+|.++..+++.|+.+|+|+|+|+.
T Consensus 2 ~~~~~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~ 76 (215)
T 2pxx_A 2 SGYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPEL-----RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSV 76 (215)
T ss_dssp GGGGCHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGC-----CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHH
T ss_pred CcccchhHHHHHhccCCCCCCcccccCHHHHHHHHHHhc-----CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHH
Confidence 368899999999987632346889999888888887776 357899999999999999999998767999999999
Q ss_pred HHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCCh-----------------hHHHHHHHHHHHhcccCcEE
Q 004354 103 VISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGH-----------------KLGNQYLSEVKRLLKSGGKF 162 (759)
Q Consensus 103 ~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~-----------------~~~~~~l~ei~rvLkpGG~l 162 (759)
+++.++++... .++++++++|+.+++ ++||+|++....+ .....+++++.++|+|||++
T Consensus 77 ~~~~a~~~~~~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 155 (215)
T 2pxx_A 77 VVAAMQACYAH-VPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRF 155 (215)
T ss_dssp HHHHHHHHTTT-CTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred HHHHHHHhccc-CCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEE
Confidence 99999888643 468999999998876 7899999854321 23689999999999999999
Q ss_pred EEEEcCchhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCCc
Q 004354 163 VCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSS 214 (759)
Q Consensus 163 iiit~~~~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~~ 214 (759)
++.++..++....++.....+|.+....+.. ..++|+|++++.+.+
T Consensus 156 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 201 (215)
T 2pxx_A 156 ISMTSAAPHFRTRHYAQAYYGWSLRHATYGS------GFHFHLYLMHKGGKL 201 (215)
T ss_dssp EEEESCCHHHHHHHHCCGGGCEEEEEEEESG------GGCEEEEEEEETCCC
T ss_pred EEEeCCCcHHHHHHHhccccCcEEEEEEecC------cceEEEEEEEeCCCC
Confidence 9999999988888887776689888877743 478899999887654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-19 Score=191.82 Aligned_cols=185 Identities=15% Similarity=0.176 Sum_probs=140.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-----CCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-----TQD 578 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-----~~~ 578 (759)
+.||+.|. +++++.+ +.+.+||+||+|+|.++..+.++.|..+|++||+||.++++|+++|.. ..+
T Consensus 61 ~~Y~e~l~-~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~ 131 (314)
T 1uir_A 61 YIYHETLV-HPAMLTH--------PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDD 131 (314)
T ss_dssp HHHHHHHH-HHHHHHS--------SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGC
T ss_pred hHHHHHHH-HHHHhcC--------CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccC
Confidence 56887655 3444433 567899999999999999999887778999999999999999999842 136
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHH
Q 004354 579 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 658 (759)
Q Consensus 579 ~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~ 658 (759)
++++++++|+.+++.... .+||+||+|..... ++.+|+..+++.+
T Consensus 132 ~~v~~~~~D~~~~l~~~~--------------------------------~~fD~Ii~d~~~~~---~~~~~~~~l~~~~ 176 (314)
T 1uir_A 132 PRAVLVIDDARAYLERTE--------------------------------ERYDVVIIDLTDPV---GEDNPARLLYTVE 176 (314)
T ss_dssp TTEEEEESCHHHHHHHCC--------------------------------CCEEEEEEECCCCB---STTCGGGGGSSHH
T ss_pred CceEEEEchHHHHHHhcC--------------------------------CCccEEEECCCCcc---cccCcchhccHHH
Confidence 899999999999987632 57999999876532 2345678888999
Q ss_pred HHHHHHHccCcCcEEEEEecCC---ChhHHHHHHHHHHHhcCceEEEe--e--cCCccEEEEEecCC--CCCCCCcHHHH
Q 004354 659 FLLTVKDALSEQGLFIVNLVSR---SQATKDMVISRMKMVFNHLFCLQ--L--EEDVNLVLFGLSSE--SCIKDNSFPEA 729 (759)
Q Consensus 659 fl~~~~~~L~~~Gilv~N~~~~---~~~~~~~v~~~l~~vF~~v~~~~--~--~~~~N~Vl~a~~~~--~~~~~~~l~~~ 729 (759)
|++.++++|+|||+|++|..+. +......+.+.++++|+++..+. + ..+.+.+++|++.. .......+.++
T Consensus 177 ~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~~~~~as~~~~p~~~~~~~~~~~ 256 (314)
T 1uir_A 177 FYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEAR 256 (314)
T ss_dssp HHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEEESSSCTTCCCTTHHHHH
T ss_pred HHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeEEEEEEECCCCcccCCHHHHHHH
Confidence 9999999999999999997543 34566778999999999865443 2 34467788898873 33444445555
Q ss_pred HHH
Q 004354 730 AVQ 732 (759)
Q Consensus 730 a~~ 732 (759)
...
T Consensus 257 ~~~ 259 (314)
T 1uir_A 257 IRE 259 (314)
T ss_dssp HHH
T ss_pred hhc
Confidence 443
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-18 Score=182.68 Aligned_cols=165 Identities=23% Similarity=0.362 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc----CCC---
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFT--- 576 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F----gl~--- 576 (759)
+.||..|. .++++.+ +.+.+||+||+|+|.++..+..+ |..+|++||+||.++++|+++| ++.
T Consensus 59 ~~y~e~l~-~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~ 128 (281)
T 1mjf_A 59 RSYHEPLV-HPAMLAH--------PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAM 128 (281)
T ss_dssp HHHHHHHH-HHHHHHS--------SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHH
T ss_pred hHHHHHHH-HHHHhhC--------CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhcccccccc
Confidence 56887665 4444332 45689999999999999999988 8789999999999999999999 331
Q ss_pred ---CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCC
Q 004354 577 ---QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD 653 (759)
Q Consensus 577 ---~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~ 653 (759)
.+++++++++||.+++.. . .+||+|++|..... +|+..
T Consensus 129 ~~~~~~~v~~~~~D~~~~l~~-~--------------------------------~~fD~Ii~d~~~~~------~~~~~ 169 (281)
T 1mjf_A 129 LNGKHEKAKLTIGDGFEFIKN-N--------------------------------RGFDVIIADSTDPV------GPAKV 169 (281)
T ss_dssp HTTCCSSEEEEESCHHHHHHH-C--------------------------------CCEEEEEEECCCCC-----------
T ss_pred ccCCCCcEEEEECchHHHhcc-c--------------------------------CCeeEEEECCCCCC------Ccchh
Confidence 368999999999999876 4 57999999876432 25677
Q ss_pred CChHHHHHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEe--ec--CCccEEEEEecC
Q 004354 654 FVEGSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LE--EDVNLVLFGLSS 717 (759)
Q Consensus 654 f~~~~fl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~--~~~N~Vl~a~~~ 717 (759)
+++.+|++.++++|+|||+|++|..+. .......+.+.++++|+++..+. ++ .+.+.+++|++.
T Consensus 170 l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~~~~~~as~~ 239 (281)
T 1mjf_A 170 LFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVKG 239 (281)
T ss_dssp TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred hhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCceEEEEEeeCC
Confidence 888999999999999999999997543 45666778999999999866554 23 345778889886
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-18 Score=179.20 Aligned_cols=167 Identities=22% Similarity=0.328 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC----CCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~----~~~ 579 (759)
+.||. |+.+++++.+ +.+.+||+||+|+|.++..+..+.|..+|++||+||.++++|+++|... .++
T Consensus 62 ~~Y~e-~l~~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~ 132 (283)
T 2i7c_A 62 FAYHE-MMTHVPMTVS--------KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDK 132 (283)
T ss_dssp HHHHH-HHHHHHHTTS--------SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGST
T ss_pred hhHHH-HHHHHHHhcC--------CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCC
Confidence 56776 6666666543 5678999999999999999998877789999999999999999998542 368
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++|+.+++.... .+||+||+|.... . .|+..+++.+|
T Consensus 133 ~v~~~~~D~~~~l~~~~--------------------------------~~fD~Ii~d~~~~--~----~~~~~l~~~~~ 174 (283)
T 2i7c_A 133 RVNVFIEDASKFLENVT--------------------------------NTYDVIIVDSSDP--I----GPAETLFNQNF 174 (283)
T ss_dssp TEEEEESCHHHHHHHCC--------------------------------SCEEEEEEECCCT--T----TGGGGGSSHHH
T ss_pred cEEEEECChHHHHHhCC--------------------------------CCceEEEEcCCCC--C----CcchhhhHHHH
Confidence 99999999999987642 5799999987543 2 24677888999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEE--eecC--Ccc-EEEEEecC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCL--QLEE--DVN-LVLFGLSS 717 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~--~~~~--~~N-~Vl~a~~~ 717 (759)
++.++++|+|||+|++|..+. .......+.++++++|+++..+ .++. +.+ ..++|++.
T Consensus 175 l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~g~~g~~~~s~~ 239 (283)
T 2i7c_A 175 YEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKT 239 (283)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred HHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCCCcEEEEEEeCC
Confidence 999999999999999997543 4455677899999999976443 3443 234 46777765
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=179.55 Aligned_cols=167 Identities=17% Similarity=0.283 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC----CCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~----~~~ 579 (759)
+.||. |++++++..+ +.+.+||+||+|+|.++..+..+.|..+|++||+||.++++|+++|... .++
T Consensus 92 ~~Y~e-~l~~l~l~~~--------~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~ 162 (314)
T 2b2c_A 92 FSYQE-MLAHLPMFAH--------PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 162 (314)
T ss_dssp SHHHH-HHHHHHHHHS--------SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCT
T ss_pred hHHHH-HHHHHHHhhC--------CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCC
Confidence 45876 6666665443 4668999999999999999998877789999999999999999998432 368
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++|+.+++... ..+||+||+|..... .|+..+++.+|
T Consensus 163 rv~~~~~D~~~~l~~~--------------------------------~~~fD~Ii~d~~~~~------~~~~~l~t~~~ 204 (314)
T 2b2c_A 163 KLDLFCGDGFEFLKNH--------------------------------KNEFDVIITDSSDPV------GPAESLFGQSY 204 (314)
T ss_dssp TEEEECSCHHHHHHHC--------------------------------TTCEEEEEECCC-------------------H
T ss_pred CEEEEEChHHHHHHhc--------------------------------CCCceEEEEcCCCCC------CcchhhhHHHH
Confidence 9999999999998763 267999999875431 25667888999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEe--ecC--Ccc-EEEEEecC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE--DVN-LVLFGLSS 717 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~--~~N-~Vl~a~~~ 717 (759)
++.++++|+|||+|+++..+. +......+.+.++++|+++..+. ++. +.+ .+++|++.
T Consensus 205 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~~g~~~ask~ 269 (314)
T 2b2c_A 205 YELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKN 269 (314)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred HHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCcCCCceEEEEEeCC
Confidence 999999999999999987332 44556778899999999864433 333 234 47778766
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=177.57 Aligned_cols=168 Identities=20% Similarity=0.257 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC----CCCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG----FTQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg----l~~~~ 579 (759)
+.||..| .+++++.+ +.+.+||+||+|+|.++..+..+.|..+|++||+||.++++|+++|. -..++
T Consensus 74 ~~y~e~l-~~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~ 144 (296)
T 1inl_A 74 FMYHEML-AHVPMFLH--------PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDP 144 (296)
T ss_dssp HHHHHHH-HHHHHHHS--------SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCT
T ss_pred hHHHHHH-hHHHHhcC--------CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCC
Confidence 5688754 45554433 45689999999999999999988777899999999999999999982 12368
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
+++++++|+.+++.... .+||+|++|+.... . .|+..+.+.+|
T Consensus 145 ~v~~~~~D~~~~l~~~~--------------------------------~~fD~Ii~d~~~~~-~----~~~~~l~~~~~ 187 (296)
T 1inl_A 145 RAEIVIANGAEYVRKFK--------------------------------NEFDVIIIDSTDPT-A----GQGGHLFTEEF 187 (296)
T ss_dssp TEEEEESCHHHHGGGCS--------------------------------SCEEEEEEEC---------------CCSHHH
T ss_pred ceEEEECcHHHHHhhCC--------------------------------CCceEEEEcCCCcc-c----CchhhhhHHHH
Confidence 99999999999976532 57999999876431 1 25677888999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEe--ec---CCccEEEEEecC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LE---EDVNLVLFGLSS 717 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~---~~~N~Vl~a~~~ 717 (759)
++.+++.|+|||+|+++..+. +......++++++++|+++..+. ++ .+.+.+++|++.
T Consensus 188 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~as~~ 252 (296)
T 1inl_A 188 YQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKG 252 (296)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEEESS
T ss_pred HHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEEecCC
Confidence 999999999999999997553 45566788999999999876554 33 344567778765
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-16 Score=166.37 Aligned_cols=169 Identities=20% Similarity=0.227 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC----CCCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG----FTQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg----l~~~~ 579 (759)
..||..| ..+++..+ +.+.+||+||+|+|.++..+..+.+..+|++||+||.++++|+++|. -..++
T Consensus 79 ~~y~e~l-~~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~ 149 (304)
T 3bwc_A 79 FVYHEVL-GHTSLCSH--------PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADP 149 (304)
T ss_dssp HHHHHHH-HHHHHTTS--------SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCT
T ss_pred hHHHHHH-hhhhhhcC--------CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCC
Confidence 4577654 44444432 46689999999999999999988777899999999999999999982 12468
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++|+.+++.... ..+||+|++|..... .|+..+++.+|
T Consensus 150 ~v~~~~~D~~~~~~~~~-------------------------------~~~fDvIi~d~~~~~------~~~~~l~~~~~ 192 (304)
T 3bwc_A 150 RATVRVGDGLAFVRQTP-------------------------------DNTYDVVIIDTTDPA------GPASKLFGEAF 192 (304)
T ss_dssp TEEEEESCHHHHHHSSC-------------------------------TTCEEEEEEECC---------------CCHHH
T ss_pred cEEEEECcHHHHHHhcc-------------------------------CCceeEEEECCCCcc------ccchhhhHHHH
Confidence 99999999999986522 267999999875432 25778889999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHh-cCceEEEee--c---CCccEEEEEecCC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMV-FNHLFCLQL--E---EDVNLVLFGLSSE 718 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~v-F~~v~~~~~--~---~~~N~Vl~a~~~~ 718 (759)
|+.++++|+|||+|+++..+. .......+.+.++++ |+.+..+.. + .+....++|++.+
T Consensus 193 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~~~ 259 (304)
T 3bwc_A 193 YKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTLVCSKKA 259 (304)
T ss_dssp HHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEEEEESSS
T ss_pred HHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEEEEeCCc
Confidence 999999999999999987553 334567788999999 998765543 3 3445577788763
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=169.24 Aligned_cols=167 Identities=18% Similarity=0.267 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl----~~~~ 579 (759)
..||. |+.++++..+ ..+.+||+||+|+|.++..+..+.|..+|++||+||.++++|+++|.. ..++
T Consensus 79 ~~y~e-~l~~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~ 149 (304)
T 2o07_A 79 FSYQE-MIANLPLCSH--------PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSS 149 (304)
T ss_dssp HHHHH-HHHHHHHTTS--------SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCT
T ss_pred hHHHH-HHHHHHHhhC--------CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCC
Confidence 45765 5556665443 466899999999999999999887778999999999999999999842 1368
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
+++++++||.+++.... .+||+||+|..... .|+..+.+.+|
T Consensus 150 rv~v~~~Da~~~l~~~~--------------------------------~~fD~Ii~d~~~~~------~~~~~l~~~~~ 191 (304)
T 2o07_A 150 KLTLHVGDGFEFMKQNQ--------------------------------DAFDVIITDSSDPM------GPAESLFKESY 191 (304)
T ss_dssp TEEEEESCHHHHHHTCS--------------------------------SCEEEEEEECC-----------------CHH
T ss_pred cEEEEECcHHHHHhhCC--------------------------------CCceEEEECCCCCC------CcchhhhHHHH
Confidence 99999999999987532 57999999875432 24566778899
Q ss_pred HHHHHHccCcCcEEEEEecC--CChhHHHHHHHHHHHhcCceEEE--eecC---CccEEEEEecC
Q 004354 660 LLTVKDALSEQGLFIVNLVS--RSQATKDMVISRMKMVFNHLFCL--QLEE---DVNLVLFGLSS 717 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~--~~~~~~~~v~~~l~~vF~~v~~~--~~~~---~~N~Vl~a~~~ 717 (759)
++.++++|+|||+|+++..+ ........+.+.++++|+++... .++. +....++|++.
T Consensus 192 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~~as~~ 256 (304)
T 2o07_A 192 YQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKN 256 (304)
T ss_dssp HHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred HHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCcceEEEEEeCC
Confidence 99999999999999998744 34455677889999999986433 2333 22345677765
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=167.02 Aligned_cols=137 Identities=15% Similarity=0.273 Sum_probs=104.3
Q ss_pred CCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHH
Q 004354 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (759)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~ 105 (759)
.+.+||+++|.... ..+.+....+.+...+...+.. .++.+|||+|||+|.++..|++.|+ +|+|||+|+.||+
T Consensus 31 ~~~~~Wd~~y~~~~--~~~~~~~~~~~l~~~~~~~~~~---~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~ 104 (252)
T 2gb4_A 31 LTLEDWKEKWVTRH--ISFHQEQGHQLLKKHLDTFLKG---QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIR 104 (252)
T ss_dssp CCHHHHHHHHHHTC--CTTCCTTCCHHHHHHHHHHHTT---CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHH
T ss_pred CCHHHHHHHHhcCC--CCcccCCCCHHHHHHHHHhccC---CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHH
Confidence 46899999998762 2232223333444444443321 3578999999999999999999998 5999999999999
Q ss_pred HHHHHhcc------------------CCCCcEEEEeecccCC----CcccEEEeCCCCh----hHHHHHHHHHHHhcccC
Q 004354 106 DMLRRNVR------------------DRSDMRWRVMDMTSMQ----GGLDALMEPELGH----KLGNQYLSEVKRLLKSG 159 (759)
Q Consensus 106 ~a~~r~~~------------------~~~~i~f~~~D~~~~~----gtfD~Ii~~~~~~----~~~~~~l~ei~rvLkpG 159 (759)
.|+++... ...+++|+++|+.+++ ++||+|++....+ .....+++++.++||||
T Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG 184 (252)
T 2gb4_A 105 EFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE 184 (252)
T ss_dssp HHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred HHHHhcccccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC
Confidence 99877631 2468999999999886 6899999765332 23778999999999999
Q ss_pred cEEEEEEcC
Q 004354 160 GKFVCLTLA 168 (759)
Q Consensus 160 G~liiit~~ 168 (759)
|+++++++.
T Consensus 185 G~l~l~~~~ 193 (252)
T 2gb4_A 185 FQYLVAVLS 193 (252)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEe
Confidence 999877653
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-16 Score=163.57 Aligned_cols=154 Identities=12% Similarity=0.038 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl----~~~~ 579 (759)
+.||..| .++++..+ +.+.+||+||+|+|.++..+..+ + .+|++||+||.|+++|+++|.. ..++
T Consensus 56 ~~y~e~l-~~~~~~~~--------~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~ 124 (262)
T 2cmg_A 56 HIESELL-AHMGGCTK--------KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNK 124 (262)
T ss_dssp HHHHHHH-HHHHHTTS--------SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCT
T ss_pred HHHHHHH-HHHhhhcC--------CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCC
Confidence 5687654 44554433 46689999999999999988888 7 8999999999999999999843 1468
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++||.+++ .+||+||+|+. + | ..|
T Consensus 125 rv~~~~~D~~~~~------------------------------------~~fD~Ii~d~~--d--------p-----~~~ 153 (262)
T 2cmg_A 125 NFTHAKQLLDLDI------------------------------------KKYDLIFCLQE--P--------D-----IHR 153 (262)
T ss_dssp TEEEESSGGGSCC------------------------------------CCEEEEEESSC--C--------C-----HHH
T ss_pred eEEEEechHHHHH------------------------------------hhCCEEEECCC--C--------h-----HHH
Confidence 9999999998875 25999999842 2 1 239
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEee--c-CCccEEEEEecCCC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--E-EDVNLVLFGLSSES 719 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~-~~~N~Vl~a~~~~~ 719 (759)
++.+++.|+|||+|+++..+. +......+.++++++|+++..+.. + .+.+.+++|++...
T Consensus 154 ~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~vP~~g~~~~~~as~~~~ 218 (262)
T 2cmg_A 154 IDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLRILSNKGYIYASFKTH 218 (262)
T ss_dssp HHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEECCTTCTTCCEEEEEEESSCC
T ss_pred HHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEEEccCCCcccEEEEeeCCCC
Confidence 999999999999999986443 334567788999999998765542 2 44566778887643
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-16 Score=165.65 Aligned_cols=168 Identities=22% Similarity=0.344 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl----~~~~ 579 (759)
+.||. |+..+++..+ +.+.+||+||+|+|.++..+..+.|..+|++||+||.++++|++++.. ..++
T Consensus 100 ~~y~e-~l~~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~ 170 (321)
T 2pt6_A 100 FAYHE-MMTHVPMTVS--------KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDK 170 (321)
T ss_dssp HHHHH-HHHHHHHHHS--------SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGST
T ss_pred hHHHH-HHHHHHHhcC--------CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCC
Confidence 56776 4445555433 456899999999999999999887778999999999999999999853 1268
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
+++++++|+.+++.... .+||+|++|.... . .|+..+++.+|
T Consensus 171 ~v~~~~~D~~~~l~~~~--------------------------------~~fDvIi~d~~~p--~----~~~~~l~~~~~ 212 (321)
T 2pt6_A 171 RVNVFIEDASKFLENVT--------------------------------NTYDVIIVDSSDP--I----GPAETLFNQNF 212 (321)
T ss_dssp TEEEEESCHHHHHHHCC--------------------------------SCEEEEEEECCCS--S----SGGGGGSSHHH
T ss_pred cEEEEEccHHHHHhhcC--------------------------------CCceEEEECCcCC--C----CcchhhhHHHH
Confidence 99999999999987532 5799999987532 2 24567788999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEe--ecC--CccE-EEEEecCC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE--DVNL-VLFGLSSE 718 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~--~~N~-Vl~a~~~~ 718 (759)
++.+++.|+|||+|+++..+. +......++++++++|+++..+. ++. +.++ .++|++..
T Consensus 213 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~as~~~ 278 (321)
T 2pt6_A 213 YEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKTD 278 (321)
T ss_dssp HHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEEESST
T ss_pred HHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEEeeCCC
Confidence 999999999999999987553 44566778999999999865544 333 2344 46677653
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-15 Score=160.96 Aligned_cols=168 Identities=21% Similarity=0.362 Sum_probs=127.4
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCCC
Q 004354 503 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQ 577 (759)
Q Consensus 503 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----gl~~ 577 (759)
.+.||. |+..+++..+ +.+.+||+||+|+|.++..|..+.|..+|++||+||.++++|+++| |+ .
T Consensus 103 e~~y~e-~L~~l~l~~~--------~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl-~ 172 (334)
T 1xj5_A 103 ECAYQE-MITHLPLCSI--------PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY-E 172 (334)
T ss_dssp HHHHHH-HHHHHHHTTS--------SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-G
T ss_pred chHHHH-HHHHHHHhhC--------CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-C
Confidence 356776 5555665443 4678999999999999999998877789999999999999999998 33 3
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChH
Q 004354 578 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 657 (759)
Q Consensus 578 ~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~ 657 (759)
+++++++++|+.+++.... ..+||+||+|...+. .++..+...
T Consensus 173 ~~rv~~~~~D~~~~l~~~~-------------------------------~~~fDlIi~d~~~p~------~~~~~l~~~ 215 (334)
T 1xj5_A 173 DPRVNLVIGDGVAFLKNAA-------------------------------EGSYDAVIVDSSDPI------GPAKELFEK 215 (334)
T ss_dssp STTEEEEESCHHHHHHTSC-------------------------------TTCEEEEEECCCCTT------SGGGGGGSH
T ss_pred CCcEEEEECCHHHHHHhcc-------------------------------CCCccEEEECCCCcc------CcchhhhHH
Confidence 6799999999999987643 257999999875432 134567789
Q ss_pred HHHHHHHHccCcCcEEEEEecC--CChhHHHHHHHHHHHhcCceEE---EeecCC---ccEEEEEecC
Q 004354 658 SFLLTVKDALSEQGLFIVNLVS--RSQATKDMVISRMKMVFNHLFC---LQLEED---VNLVLFGLSS 717 (759)
Q Consensus 658 ~fl~~~~~~L~~~Gilv~N~~~--~~~~~~~~v~~~l~~vF~~v~~---~~~~~~---~N~Vl~a~~~ 717 (759)
+|++.++++|+|||+|+++.-+ ........++++++++|+.+.. ..++.. ....++|++.
T Consensus 216 ~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~~vP~y~~g~~gf~~as~~ 283 (334)
T 1xj5_A 216 PFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTE 283 (334)
T ss_dssp HHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECS
T ss_pred HHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCccccceEEEeCCcccCCceEEEEcccC
Confidence 9999999999999999997433 2344456678999999995332 233332 3446777764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-12 Score=152.86 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=83.5
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..+||.+|.|+|.++..+... ...+|++||+++.+++.|++.+ |+ .+++++++.+|+.+++....
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ngl-~~~~v~~i~~D~~~~l~~~~---------- 607 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNGL-TGRAHRLIQADCLAWLREAN---------- 607 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTC-CSTTEEEEESCHHHHHHHCC----------
T ss_pred CCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC-CccceEEEecCHHHHHHhcC----------
Confidence 469999999999998887764 3347999999999999999987 44 23589999999999987642
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC----ChHHHHHHHHHccCcCcEEEEEecC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f----~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
.+||+|++|...-..+..+ ...+ .-.+++..+.+.|+|||+|++-...
T Consensus 608 ----------------------~~fD~Ii~DPP~f~~~~~~---~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 608 ----------------------EQFDLIFIDPPTFSNSKRM---EDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp ----------------------CCEEEEEECCCSBC----------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ----------------------CCccEEEECCccccCCccc---hhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 6799999986331110000 0001 1246788999999999999976544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=153.35 Aligned_cols=100 Identities=17% Similarity=0.323 Sum_probs=84.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc-------------CCCCcEEEEeecccCC----
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-------------DRSDMRWRVMDMTSMQ---- 129 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~-------------~~~~i~f~~~D~~~~~---- 129 (759)
.++.+|||+|||+|.++..|++.|+ +|+|+|+|+.|++.|+++... ...+++|+++|+.+++
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 4678999999999999999999988 599999999999999988642 2468999999999987
Q ss_pred CcccEEEeCCCCh----hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 130 GGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 130 gtfD~Ii~~~~~~----~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
++||+|++....+ .....++++++|+|||||+++++++
T Consensus 100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~ 141 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 141 (203)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 5899999855333 2367899999999999999666654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8e-14 Score=137.99 Aligned_cols=127 Identities=17% Similarity=0.269 Sum_probs=100.4
Q ss_pred CCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHH
Q 004354 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (759)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~ 103 (759)
.|...+||+..|.... .. ..+...+.. .++.+|||+|||+|.++..+++.|. +|+|+|+|+.+
T Consensus 4 ~~~~~~~~~~~~~~~~---------~~----~~l~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~ 66 (199)
T 2xvm_A 4 VIRDENYFTDKYELTR---------TH----SEVLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMS 66 (199)
T ss_dssp CCCCTTHHHHHHTCCC---------CC----HHHHHHTTT---SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHH
T ss_pred EEechHHHhhhhcccc---------cc----HHHHHHhhc---cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHH
Confidence 3677889999886541 11 123344443 3567999999999999999999876 59999999999
Q ss_pred HHHHHHHhccC-CCCcEEEEeecccCC--CcccEEEeCCCChh----HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 104 ISDMLRRNVRD-RSDMRWRVMDMTSMQ--GGLDALMEPELGHK----LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 104 I~~a~~r~~~~-~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~----~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
++.++++.... .+++++.++|+.+++ ++||+|++....++ ....+++++.++|+|||++++++.
T Consensus 67 ~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 67 IANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp HHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 99998876443 347999999998876 78999999764432 478999999999999999888764
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-14 Score=147.68 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=99.6
Q ss_pred CCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHH
Q 004354 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (759)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~ 103 (759)
.|....||+.+|.... ...+. ..-...+...+.+++.. ...++.+|||||||+|.++..++..|+.+|+|+|+|+.|
T Consensus 14 ~~~~~~~~~~~y~~~~-~~~~~-~~~~~~~~~~~~~~~~~-~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~ 90 (263)
T 2a14_A 14 HFLPRDYLATYYSFDG-SPSPE-AEMLKFNLECLHKTFGP-GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRN 90 (263)
T ss_dssp HCCHHHHHHHHCCCCC-SCCHH-HHHHHHHHHHHHHHHST-TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHH
T ss_pred ccCHHHHHHHhcCCCc-ccchh-hHHHHHHHHHHHHHhcC-CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHH
Confidence 3777899999997652 11100 00011122234444422 124677999999999999887777888789999999999
Q ss_pred HHHHHHHhccCCC------------------------------CcE-EEEeecccC-------CCcccEEEeCCCChh--
Q 004354 104 ISDMLRRNVRDRS------------------------------DMR-WRVMDMTSM-------QGGLDALMEPELGHK-- 143 (759)
Q Consensus 104 I~~a~~r~~~~~~------------------------------~i~-f~~~D~~~~-------~gtfD~Ii~~~~~~~-- 143 (759)
++.+++++..... ++. ++++|+++. .++||+|++....++
T Consensus 91 l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~ 170 (263)
T 2a14_A 91 REELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC 170 (263)
T ss_dssp HHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC
T ss_pred HHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhc
Confidence 9999887543211 133 889999874 168999999875543
Q ss_pred ----HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 144 ----LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 144 ----~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
....++++++++|||||+|++.+.
T Consensus 171 ~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 171 CSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 357899999999999999999974
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.9e-14 Score=144.96 Aligned_cols=135 Identities=15% Similarity=0.259 Sum_probs=101.4
Q ss_pred CHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHH
Q 004354 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (759)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~ 106 (759)
..+||+++|.... . .|.... ....+..++.... .++.+|||+|||+|.++..|++.|. +|+|+|+|+.+++.
T Consensus 32 ~~~~w~~~~~~~~--~--~~~~~~--~~~~l~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~ 103 (235)
T 3lcc_A 32 EEGGWEKCWEEEI--T--PWDQGR--ATPLIVHLVDTSS-LPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAK 103 (235)
T ss_dssp HHHHHHHHHHTTC--C--TTCCSS--CCHHHHHHHHTTC-SCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHH
T ss_pred CHHHHHHHHhcCC--C--CcccCC--CCHHHHHHHHhcC-CCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHH
Confidence 4689999998752 2 244221 1122333332211 2346999999999999999988766 49999999999999
Q ss_pred HHHHhccC--CCCcEEEEeecccCC--CcccEEEeCCCCh----hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 107 MLRRNVRD--RSDMRWRVMDMTSMQ--GGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 107 a~~r~~~~--~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~----~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
++++.... ..+++|+++|+.+++ ++||+|++....+ .....+++++.++|+|||++++..+..
T Consensus 104 a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 104 ANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp HHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred HHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 99987542 246999999999876 7899999876433 247899999999999999999988753
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-14 Score=141.73 Aligned_cols=135 Identities=16% Similarity=0.243 Sum_probs=104.6
Q ss_pred CCHHHHHHHHhhcCCCCccc----cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCH
Q 004354 26 TSKENWDKFFTIRGIGDSFE----WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101 (759)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~e----W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~ 101 (759)
.+.++|++.|... +.+. |+.. ..+...+...+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+
T Consensus 12 ~~~~~~~~~~~~~---~~w~~~~~~~~~-~~~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~ 83 (216)
T 3ofk_A 12 NTYQSLERELAND---DPWRLDDNPFER-ERHTQLLRLSLSS---GAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMP 83 (216)
T ss_dssp SHHHHHHHHHTSS---SGGGTTTCHHHH-HHHHHHHHHHTTT---SSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCH
T ss_pred chHHHHHHHhcCC---CCcccccCHhHH-HHHHHHHHHHccc---CCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCH
Confidence 4678999999765 2222 2221 1233444445443 5678999999999999999998875 699999999
Q ss_pred HHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChhH-----HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 102 VVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHKL-----GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 102 ~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~~-----~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.+++.++++... .++++++++|+.+++ ++||+|++....++. ...+++++.++|+|||.+++.+...
T Consensus 84 ~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 84 RAIGRACQRTKR-WSHISWAATDILQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp HHHHHHHHHTTT-CSSEEEEECCTTTCCCSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred HHHHHHHHhccc-CCCeEEEEcchhhCCCCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 999999988744 348999999999887 899999998754433 4688999999999999999987544
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-14 Score=147.41 Aligned_cols=101 Identities=15% Similarity=0.095 Sum_probs=86.1
Q ss_pred CCCCeEEEECCCcchhHHHHHHh----CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC-CcccEEEeCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA----GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-GGLDALMEPE 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~----G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~-gtfD~Ii~~~ 139 (759)
.++.+|||||||+|.++..|++. |+ +|+|+|+|+.||+.|+++.... ..+++|+++|+.+++ +.||+|++..
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 47889999999999999999876 23 5999999999999999987543 347999999999998 8899999977
Q ss_pred CChh----HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 140 LGHK----LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 140 ~~~~----~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
..++ ....++++++|+|||||+|++....
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence 5543 2568999999999999999987653
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-14 Score=149.53 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=91.0
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-- 129 (759)
.+.+.+..+.. .+.+|||||||+|.++..|++.|. +|+|+|+|+.|++.|+ ..++++|+++|+.+++
T Consensus 28 ~l~~~l~~~~~-----~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~-----~~~~v~~~~~~~e~~~~~ 96 (257)
T 4hg2_A 28 ALFRWLGEVAP-----ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQAL-----RHPRVTYAVAPAEDTGLP 96 (257)
T ss_dssp HHHHHHHHHSS-----CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCC-----CCTTEEEEECCTTCCCCC
T ss_pred HHHHHHHHhcC-----CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhh-----hcCCceeehhhhhhhccc
Confidence 45555666553 457999999999999999998865 6999999999987653 3478999999999887
Q ss_pred -CcccEEEeCCCChhH-HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 130 -GGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 130 -gtfD~Ii~~~~~~~~-~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++||+|+|....|+. ..+++++++|+|||||+|+++++..+
T Consensus 97 ~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 97 PASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp SSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred CCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 899999998877776 88999999999999999999987643
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=132.87 Aligned_cols=139 Identities=9% Similarity=0.054 Sum_probs=101.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC----CcccEEEeCC-C
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ----GGLDALMEPE-L 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~----gtfD~Ii~~~-~ 140 (759)
.++.+|||+|||+|.++..|++.+. +|+|+|+|+.+++.|+++.... ..++++++.|+.++. ++||+|+++. .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 4678999999999999999998844 6999999999999999887543 367999998887743 7899999862 1
Q ss_pred ----------ChhHHHHHHHHHHHhcccCcEEEEEEcCch-------hhhhhhcccc-CCCceEEEEEeCCCCCCCCCce
Q 004354 141 ----------GHKLGNQYLSEVKRLLKSGGKFVCLTLAES-------HVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQ 202 (759)
Q Consensus 141 ----------~~~~~~~~l~ei~rvLkpGG~liiit~~~~-------~~~~~l~~~~-~~~w~v~~~~~~~~~~~~~~~~ 202 (759)
.......+++++.++|||||+++++.+... .....++... ..+|.+....... ....+
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~ 175 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLN----QINTP 175 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESS----CSSCC
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhc----cCCCC
Confidence 112366889999999999999999987521 1222233332 2368777766654 23455
Q ss_pred EEEEEEEe
Q 004354 203 TFMVVADK 210 (759)
Q Consensus 203 ~f~~v~~K 210 (759)
+++++..|
T Consensus 176 ~~~~~i~~ 183 (185)
T 3mti_A 176 PFLVMLEK 183 (185)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEEe
Confidence 66666655
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-13 Score=139.48 Aligned_cols=139 Identities=15% Similarity=0.189 Sum_probs=101.9
Q ss_pred CCHHHHHHHHhhcC--CCCccccccc-hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHH
Q 004354 26 TSKENWDKFFTIRG--IGDSFEWYAE-WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (759)
Q Consensus 26 ~~~~yWd~~y~~~~--~~~~~eW~~~-~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~ 102 (759)
...++|+++|.... ....+ |... .......+..++.. ..++.+|||+|||+|.++..|++.+. +|+|+|+|+.
T Consensus 14 ~~~~~w~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~ 89 (245)
T 3ggd_A 14 NVADAWEQYWNKTLVNSTPVL-WDANVERAVVVDLPRFELL--FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKS 89 (245)
T ss_dssp CHHHHHHHHHHHHHHHTCCCT-TCCCGGGTHHHHHHHHTTT--SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHH
T ss_pred chHHHHHHHHHhcccCCccce-ecchhHHHHHHHHHHHhhc--cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHH
Confidence 34667777776531 01122 3322 22233334444332 24678999999999999999999977 5999999999
Q ss_pred HHHHHHHHhccCCCCcEEEEeecccCC--------CcccEEEeCCCChh----HHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 103 VISDMLRRNVRDRSDMRWRVMDMTSMQ--------GGLDALMEPELGHK----LGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 103 ~I~~a~~r~~~~~~~i~f~~~D~~~~~--------gtfD~Ii~~~~~~~----~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+++.++++. ...+++|+++|+.+++ ..||+|++....++ ....+++++.++|+|||++++.++..+
T Consensus 90 ~~~~a~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 90 ALEIAAKEN--TAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp HHHHHHHHS--CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred HHHHHHHhC--cccCceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 999998886 2347999999998865 24999999764443 378999999999999999999987654
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.4e-14 Score=142.26 Aligned_cols=130 Identities=18% Similarity=0.329 Sum_probs=91.2
Q ss_pred CHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHH
Q 004354 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (759)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~ 106 (759)
+.+||+.+|.... .....++. .+..++ +++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.
T Consensus 2 ~~~yw~~~~~~~~-~~~~~~~~-------~~~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~ 67 (235)
T 3sm3_A 2 PESYWEKVSGKNI-PSSLDLYP-------IIHNYL-----QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRL 67 (235)
T ss_dssp -----------------CCCCT-------THHHHC-----CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred chhHHHHHhhccC-CCHHHHHH-------HHHHhC-----CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHH
Confidence 3579999887541 11112222 344555 3578999999999999999999876 59999999999999
Q ss_pred HHHHhccCCC------CcEEEEeecccCC---CcccEEEeCCCChhH-----HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 107 MLRRNVRDRS------DMRWRVMDMTSMQ---GGLDALMEPELGHKL-----GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 107 a~~r~~~~~~------~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~-----~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++++...... ++++.++|+.+++ ++||+|++....++. ...+++++.++|+|||++++.++...
T Consensus 68 a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (235)
T 3sm3_A 68 AETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145 (235)
T ss_dssp HHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred HHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 9988754332 5799999998876 789999997654432 44899999999999999999987653
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-13 Score=134.64 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=84.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChhH-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHKL- 144 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~~- 144 (759)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.. .+++++++|+.+++ ++||+|++....++.
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFEVPTSIDTIVSTYAFHHLT 120 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCCCCSCCSEEEEESCGGGSC
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhcCCCCCeEEEEECcchhcCC
Confidence 678999999999999999999876 59999999999999988764 57999999999887 799999998765543
Q ss_pred -H--HHHHHHHHHhcccCcEEEEEEc
Q 004354 145 -G--NQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 145 -~--~~~l~ei~rvLkpGG~liiit~ 167 (759)
. ..+++++.++|||||.+++.+.
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 121 DDEKNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 3 4499999999999999999874
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=140.74 Aligned_cols=100 Identities=11% Similarity=0.089 Sum_probs=87.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
.++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.++++.... .+++++++|+.+++ ++||+|++....++
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 170 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHCCCCCCCeEEEEEcchhhh
Confidence 567899999999999999999887767999999999999999887443 67999999998876 78999999775443
Q ss_pred ----HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 144 ----LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 144 ----~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
....+++++.++|+|||++++.+.
T Consensus 171 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 171 LTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 378999999999999999999874
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-14 Score=140.35 Aligned_cols=130 Identities=19% Similarity=0.245 Sum_probs=99.1
Q ss_pred HHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 004354 30 NWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR 109 (759)
Q Consensus 30 yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~ 109 (759)
||+++|... .+.|..........+...+ .++ +|||+|||+|.++..+++.|. +|+|+|+|+.+++.+++
T Consensus 1 ~W~~~y~~~----~~~~~~~~~~~l~~~~~~~-----~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~ 69 (202)
T 2kw5_A 1 MWDERFSQS----EYVYGTEPNDFLVSVANQI-----PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQ 69 (202)
T ss_dssp CCCCCCCCC----CCCCCCCCCSSHHHHHHHS-----CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHH
T ss_pred Chhhhhccc----chhhccCchHHHHHHHHhC-----CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHH
Confidence 677777644 1234333333333333333 245 999999999999999998877 69999999999999998
Q ss_pred HhccCCCCcEEEEeecccCC---CcccEEEeCCCC--hhHHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 110 RNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELG--HKLGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 110 r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~--~~~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+......++.+.++|+.+++ ++||+|++.... ......+++++.++|+|||++++.++...
T Consensus 70 ~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 135 (202)
T 2kw5_A 70 LAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE 135 (202)
T ss_dssp HHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred HHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 87655558999999998876 789999985422 23488999999999999999999987654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=139.87 Aligned_cols=130 Identities=16% Similarity=0.199 Sum_probs=98.1
Q ss_pred HHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHH
Q 004354 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (759)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a 107 (759)
++||+..|.... ..+......+..++......++.+|||+|||+|.++..+++.|+ +|+|+|+|+.+++.+
T Consensus 9 a~~yd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a 79 (252)
T 1wzn_A 9 AEYYDTIYRRRI--------ERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVA 79 (252)
T ss_dssp GGGHHHHTHHHH--------HTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred HHHHHHHHhcch--------hhhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHH
Confidence 678888876531 11222223333333322224568999999999999999999877 599999999999999
Q ss_pred HHHhccCCCCcEEEEeecccCC--CcccEEEeCCC-C----hhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 108 LRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPEL-G----HKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 108 ~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~-~----~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+++......+++++++|+.+++ ++||+|++... . ......+++++.++|+|||.+++..
T Consensus 80 ~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 80 RRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp HHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhcCCceEEEECChhhcccCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 9987666668999999999876 78999998531 1 1247899999999999999998754
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=141.62 Aligned_cols=139 Identities=15% Similarity=0.181 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHhhcCCCCcc--ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCH
Q 004354 24 DFTSKENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101 (759)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~--eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~ 101 (759)
.|...+||+.+|.... ..+ .++..+ ....+..++.. ...++.+|||+|||+|.++..++..++.+|+|+|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~l~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~ 89 (265)
T 2i62_A 15 HFNPRDYLEKYYSFGS--RHCAENEILRH--LLKNLFKIFCL-GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTD 89 (265)
T ss_dssp HCCHHHHHHHHHCCCS--SCHHHHHHHHH--HHHHHHHHHHS-SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCH
T ss_pred hcCHHHHHHHHhCcCC--cchhHHHHHHh--hHHHHHHHhcc-cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCH
Confidence 4667889999997652 111 111111 11222233322 2245679999999999999999888775699999999
Q ss_pred HHHHHHHHHhccCCC------------------------------Cc-EEEEeecccCC-------CcccEEEeCCCCh-
Q 004354 102 VVISDMLRRNVRDRS------------------------------DM-RWRVMDMTSMQ-------GGLDALMEPELGH- 142 (759)
Q Consensus 102 ~~I~~a~~r~~~~~~------------------------------~i-~f~~~D~~~~~-------gtfD~Ii~~~~~~- 142 (759)
.+++.++++...... ++ ++.++|+.+.. ++||+|++....+
T Consensus 90 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~ 169 (265)
T 2i62_A 90 QNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDA 169 (265)
T ss_dssp HHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH
T ss_pred HHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhh
Confidence 999999888743211 17 89999998753 6799999987555
Q ss_pred ---h--HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 ---K--LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ---~--~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+ ....+++++.++|+|||++++...
T Consensus 170 ~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 170 ACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 3 488999999999999999998874
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=141.48 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=86.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChhH-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHKL- 144 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~~- 144 (759)
++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++... +++++++|+.++. ++||+|++....++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD---GITYIHSRFEDAQLPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHcCcCCcccEEEEhhHHHhhc
Confidence 567899999999999999998877 599999999999999888643 7999999998875 889999998766554
Q ss_pred -HHHHHHHHH-HhcccCcEEEEEEcCch
Q 004354 145 -GNQYLSEVK-RLLKSGGKFVCLTLAES 170 (759)
Q Consensus 145 -~~~~l~ei~-rvLkpGG~liiit~~~~ 170 (759)
...+++++. ++|||||++++.+....
T Consensus 118 ~~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 118 DPVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 789999999 99999999999987654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=139.17 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=89.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
.++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.++++.. ..+++++++|+.+++ ++||+|++....++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 120 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHY 120 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhCCCCCCCeEEEEEchhhhh
Confidence 4678999999999999999999988679999999999999988864 568999999998876 79999999876554
Q ss_pred H--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
. ...+++++.++|+|||++++.+...
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 148 (253)
T 3g5l_A 121 IASFDDICKKVYINLKSSGSFIFSVEHP 148 (253)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred hhhHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 3 8899999999999999999887543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-13 Score=136.31 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=85.6
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
++.+|||+|||+|.++..|++.+..+|+|+|+|+.+++.++++.... ..+++++++|+.+++ ++||+|++....++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 57899999999999999998887668999999999999999887543 346899999998876 68999999875443
Q ss_pred H----HHHHHHHHHHhcccCcEEEEEEc
Q 004354 144 L----GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 144 ~----~~~~l~ei~rvLkpGG~liiit~ 167 (759)
. ...+++++.++|+|||++++.+.
T Consensus 159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 186 (241)
T 2ex4_A 159 LTDQHLAEFLRRCKGSLRPNGIIVIKDN 186 (241)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 3 55899999999999999999765
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-13 Score=132.67 Aligned_cols=108 Identities=14% Similarity=0.118 Sum_probs=90.3
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--- 129 (759)
....+..++.. .+.+|||+|||+|.++..|++.|. +|+|+|+|+.+++.++++. ++++++++|+.+++
T Consensus 30 ~~~~l~~~~~~----~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~ 100 (203)
T 3h2b_A 30 DRVLIEPWATG----VDGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH----PSVTFHHGTITDLSDSP 100 (203)
T ss_dssp THHHHHHHHHH----CCSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC----TTSEEECCCGGGGGGSC
T ss_pred HHHHHHHHhcc----CCCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC----CCCeEEeCcccccccCC
Confidence 34455555543 367999999999999999999977 4999999999999988773 57999999998876
Q ss_pred CcccEEEeCCCChh----HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 130 GGLDALMEPELGHK----LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 130 gtfD~Ii~~~~~~~----~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
++||+|++....++ ....+++++.++|+|||++++.++..
T Consensus 101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 144 (203)
T 3h2b_A 101 KRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSG 144 (203)
T ss_dssp CCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred CCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 79999999764433 47899999999999999999988654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.2e-13 Score=130.82 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=108.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC----CcccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ----GGLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~----gtfD~Ii~~ 138 (759)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++..... .+++++++|+.++. ++||+|+++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence 46789999999999999999887 23479999999999999999875543 47999999987764 789999986
Q ss_pred CCC-----------hhHHHHHHHHHHHhcccCcEEEEEEcCc-------hhhhhhhcccc-CCCceEEEEEeCCCCCCCC
Q 004354 139 ELG-----------HKLGNQYLSEVKRLLKSGGKFVCLTLAE-------SHVLGLLFPKF-RFGWKMSVHAIPQKSSSEP 199 (759)
Q Consensus 139 ~~~-----------~~~~~~~l~ei~rvLkpGG~liiit~~~-------~~~~~~l~~~~-~~~w~v~~~~~~~~~~~~~ 199 (759)
... ......+++++.++|+|||++++..+.. ......++... ..+|.+....+.+ ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~----~~ 176 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFIN----QA 176 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETT----CC
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEecc----Cc
Confidence 421 1135679999999999999999998643 12233333333 3478888877765 34
Q ss_pred CceEEEEEEEeCC
Q 004354 200 SLQTFMVVADKEN 212 (759)
Q Consensus 200 ~~~~f~~v~~K~~ 212 (759)
..|+|+++.+|..
T Consensus 177 ~~pp~~~~~~~~~ 189 (197)
T 3eey_A 177 NCPPILVCIEKIS 189 (197)
T ss_dssp SCCCEEEEEEECC
T ss_pred cCCCeEEEEEEcc
Confidence 5688888888754
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.8e-13 Score=133.50 Aligned_cols=130 Identities=20% Similarity=0.188 Sum_probs=101.2
Q ss_pred HHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHH
Q 004354 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (759)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a 107 (759)
.++|+..+... |...++.+...+...+.. .+. +|||+|||+|.++..+++....+|+|+|+|+.+++.+
T Consensus 14 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~---~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a 82 (219)
T 3dlc_A 14 AKNMDEISKTL-------FAPIYPIIAENIINRFGI---TAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIA 82 (219)
T ss_dssp HHHHHHHHHTT-------TTTHHHHHHHHHHHHHCC---CEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHH
T ss_pred hhhHHHHHHHh-------hccccHHHHHHHHHhcCC---CCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHH
Confidence 56777766543 122344555566666654 334 9999999999999999987333699999999999999
Q ss_pred HHHhccCC--CCcEEEEeecccCC---CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 108 LRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 108 ~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++++.... ++++++++|+.+++ ++||+|++....++. ...+++++.++|+|||++++....
T Consensus 83 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 83 LKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp HHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 99875543 47999999999876 789999998755543 789999999999999999988643
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=131.38 Aligned_cols=156 Identities=18% Similarity=0.162 Sum_probs=111.7
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC------CCcEEEEeec
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR------SDMRWRVMDM 125 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~------~~i~f~~~D~ 125 (759)
....+..++.. .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.+++++.... ++++++++|+
T Consensus 17 ~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 93 (219)
T 3jwg_A 17 RLGTVVAVLKS---VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL 93 (219)
T ss_dssp HHHHHHHHHHH---TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS
T ss_pred HHHHHHHHHhh---cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc
Confidence 33445555543 4678999999999999999998754 579999999999999998874322 2799999999
Q ss_pred ccCC---CcccEEEeCCCChhH----HHHHHHHHHHhcccCcEEEEEEcCchh-----------------------hhhh
Q 004354 126 TSMQ---GGLDALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLTLAESH-----------------------VLGL 175 (759)
Q Consensus 126 ~~~~---gtfD~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~liiit~~~~~-----------------------~~~~ 175 (759)
...+ ++||+|++....++. ...+++++.++|+|||.++........ ....
T Consensus 94 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (219)
T 3jwg_A 94 VYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQT 173 (219)
T ss_dssp SSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHH
T ss_pred cccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHH
Confidence 7766 789999998755443 478999999999999976665432110 0010
Q ss_pred hccc--cCCCceEEEEEeCCCCCCCCCceEEEEEEEeCC
Q 004354 176 LFPK--FRFGWKMSVHAIPQKSSSEPSLQTFMVVADKEN 212 (759)
Q Consensus 176 l~~~--~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~ 212 (759)
++.. ...||.+....+.... ...+.+.-+-|++|+.
T Consensus 174 ~~~~l~~~~Gf~v~~~~~g~~~-~~~g~~~qi~~~~~~~ 211 (219)
T 3jwg_A 174 WAVKVAEKYGYSVRFLQIGEID-DEFGSPTQMGVFTLGA 211 (219)
T ss_dssp HHHHHHHHHTEEEEEEEESCCC-TTSCCSEEEEEEEECC
T ss_pred HHHHHHHHCCcEEEEEecCCcc-ccCCCCeEEEEEeccC
Confidence 0001 1237888888877643 3566778888888863
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.9e-13 Score=129.84 Aligned_cols=139 Identities=20% Similarity=0.266 Sum_probs=98.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeC-CCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEP-ELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~-~~~~ 142 (759)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++. ++++++++|+.+++ +.||+|++. ...+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 119 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF----PEARWVVGDLSVDQISETDFDLIVSAGNVMG 119 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----TTSEEEECCTTTSCCCCCCEEEEEECCCCGG
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC----CCCcEEEcccccCCCCCCceeEEEECCcHHh
Confidence 3678999999999999999998876 6999999999999998775 46899999998865 789999997 4332
Q ss_pred ----hHHHHHHHHHHHhcccCcEEEEEEcCchh-hhhhhcccc-CCCceEEEEEeCCCCC-CCCCceEEEEEEEe
Q 004354 143 ----KLGNQYLSEVKRLLKSGGKFVCLTLAESH-VLGLLFPKF-RFGWKMSVHAIPQKSS-SEPSLQTFMVVADK 210 (759)
Q Consensus 143 ----~~~~~~l~ei~rvLkpGG~liiit~~~~~-~~~~l~~~~-~~~w~v~~~~~~~~~~-~~~~~~~f~~v~~K 210 (759)
.....+++++.++|+|||++++....... ....+.... ..||.+.......... .....+.++++++|
T Consensus 120 ~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k 194 (195)
T 3cgg_A 120 FLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTK 194 (195)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEE
T ss_pred hcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEec
Confidence 23689999999999999999987754321 111121111 1266655433221111 12344566677665
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=131.53 Aligned_cols=155 Identities=13% Similarity=0.076 Sum_probs=110.7
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM 128 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~ 128 (759)
..+...+...+.. .++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++.... ..+++++++|+.+.
T Consensus 26 ~~i~~~~l~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 102 (204)
T 3e05_A 26 QEVRAVTLSKLRL---QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG 102 (204)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT
T ss_pred HHHHHHHHHHcCC---CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh
Confidence 4555556666654 578899999999999999999986 357999999999999999886442 35799999999655
Q ss_pred C---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhh--hhhhccccCCCceEEEEEeCCC-----CC--
Q 004354 129 Q---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV--LGLLFPKFRFGWKMSVHAIPQK-----SS-- 196 (759)
Q Consensus 129 ~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~--~~~l~~~~~~~w~v~~~~~~~~-----~~-- 196 (759)
. +.||+|++....+ ....+++++.++|+|||++++.+...... ...++. ..+|.+.+..+... ..
T Consensus 103 ~~~~~~~D~i~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~--~~g~~~~~~~~~~~~~~~~~~~~ 179 (204)
T 3e05_A 103 LDDLPDPDRVFIGGSGG-MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLE--DHGYMVEVACVNVAKTKGLTEYK 179 (204)
T ss_dssp CTTSCCCSEEEESCCTT-CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHH--HTTCEEEEEEEEEEEEC---CCC
T ss_pred hhcCCCCCEEEECCCCc-CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHH--HCCCceeEEEEEeecceEccceE
Confidence 3 7899999976543 57799999999999999999987654322 222222 23565444333111 00
Q ss_pred -CCCCceEEEEEEEeC
Q 004354 197 -SEPSLQTFMVVADKE 211 (759)
Q Consensus 197 -~~~~~~~f~~v~~K~ 211 (759)
.....|+|++.++|.
T Consensus 180 ~~~~~~Pv~i~~~~~~ 195 (204)
T 3e05_A 180 MFESHNPVYIITAWKS 195 (204)
T ss_dssp BCEECCCEEEEEEECC
T ss_pred EeccCCCeEEEEEEcC
Confidence 123457888877764
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-13 Score=142.75 Aligned_cols=146 Identities=16% Similarity=0.215 Sum_probs=109.1
Q ss_pred ccccccccCCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEE
Q 004354 16 TDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGIT 95 (759)
Q Consensus 16 ~~lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~Vt 95 (759)
+.+|..+.+-...++|+.++... ...+..+...+...+.. .++.+|||||||+|.++..|++.|. +|+
T Consensus 16 ~~~~~~y~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~ 83 (293)
T 3thr_A 16 EGIPDQYADGEAARVWQLYIGDT--------RSRTAEYKAWLLGLLRQ---HGCHRVLDVACGTGVDSIMLVEEGF-SVT 83 (293)
T ss_dssp TTSCCTTTTCHHHHHHHHHHTCC--------SCBCHHHHHHHHHHHHH---TTCCEEEETTCTTSHHHHHHHHTTC-EEE
T ss_pred ccChhhhcCchHHHHHHHHHhcC--------cchHHHHHHHHHHHhcc---cCCCEEEEecCCCCHHHHHHHHCCC-eEE
Confidence 44665554444566898877433 23334555666666654 4678999999999999999999987 699
Q ss_pred EEeCCHHHHHHHHHHhccC-----CCCcEEEEeecccCC------CcccEEEeC-CCCh---------hHHHHHHHHHHH
Q 004354 96 NVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSMQ------GGLDALMEP-ELGH---------KLGNQYLSEVKR 154 (759)
Q Consensus 96 gIDiS~~~I~~a~~r~~~~-----~~~i~f~~~D~~~~~------gtfD~Ii~~-~~~~---------~~~~~~l~ei~r 154 (759)
|+|+|+.+++.++++.... ..++.+.++|+.+++ ++||+|+|. ...+ .....+++++++
T Consensus 84 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~ 163 (293)
T 3thr_A 84 SVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS 163 (293)
T ss_dssp EEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHH
Confidence 9999999999998875322 246889999987742 799999996 4332 237899999999
Q ss_pred hcccCcEEEEEEcCchhhh
Q 004354 155 LLKSGGKFVCLTLAESHVL 173 (759)
Q Consensus 155 vLkpGG~liiit~~~~~~~ 173 (759)
+|||||++++.........
T Consensus 164 ~LkpgG~l~~~~~~~~~~~ 182 (293)
T 3thr_A 164 MVRPGGLLVIDHRNYDYIL 182 (293)
T ss_dssp TEEEEEEEEEEEECHHHHH
T ss_pred HcCCCeEEEEEeCCHHHHh
Confidence 9999999999887655443
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-13 Score=142.80 Aligned_cols=134 Identities=12% Similarity=0.188 Sum_probs=103.7
Q ss_pred CCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHH--hCCCeEEEEeCCHH
Q 004354 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD--AGFHGITNVDFSKV 102 (759)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~--~G~~~VtgIDiS~~ 102 (759)
|.+..|..+.|...... | ...+...+..+.. .++.+|||+|||+|.++..|++ .+..+|+|+|+|+.
T Consensus 4 f~~~~~~~~~y~~~rp~-----y--~~~~~~~l~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~ 72 (299)
T 3g5t_A 4 FSASDFNSERYSSSRPS-----Y--PSDFYKMIDEYHD----GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSAT 72 (299)
T ss_dssp GGSTTCCHHHHHHHSCC-----C--CHHHHHHHHHHCC----SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHH
T ss_pred ccccccChHHHhhcCCC-----C--CHHHHHHHHHHhc----CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHH
Confidence 55555556666554211 1 2345555666654 3678999999999999999996 34567999999999
Q ss_pred HHHHHHHHhccC---CCCcEEEEeecccCC---------CcccEEEeCCCChhH-HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 103 VISDMLRRNVRD---RSDMRWRVMDMTSMQ---------GGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 103 ~I~~a~~r~~~~---~~~i~f~~~D~~~~~---------gtfD~Ii~~~~~~~~-~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+++.++++.... .++++|+++|+.+++ ++||+|++....++. ...+++++.++|+|||.+++.++..
T Consensus 73 ~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 152 (299)
T 3g5t_A 73 MIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIWGYAD 152 (299)
T ss_dssp HHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999999987654 578999999998875 479999998765554 8899999999999999999976653
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.8e-13 Score=133.77 Aligned_cols=109 Identities=13% Similarity=0.110 Sum_probs=90.7
Q ss_pred HHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC---C
Q 004354 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ---G 130 (759)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~---g 130 (759)
+...+.. .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.++++.... .+++++.++|+.+++ +
T Consensus 29 ~~~~~~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 29 VLKEFGL---KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHTC---CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHhCC---CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 4444443 567899999999999999999885 247999999999999999887443 347999999998876 7
Q ss_pred cccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 131 GLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 131 tfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+||+|++....++. ...+++++.++|+|||++++.++.
T Consensus 106 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 145 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWK 145 (219)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEec
Confidence 89999998765544 789999999999999999998764
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.5e-13 Score=142.42 Aligned_cols=117 Identities=17% Similarity=0.242 Sum_probs=95.0
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeeccc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTS 127 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~----~~i~f~~~D~~~ 127 (759)
.....+...+.. ++.+|||||||+|.++..|++.|.. |+|+|+|+.+++.++++..... .+++|+++|+.+
T Consensus 70 ~~~~~~~~~~~~----~~~~vLDlGcG~G~~~~~l~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 144 (299)
T 3g2m_A 70 SEAREFATRTGP----VSGPVLELAAGMGRLTFPFLDLGWE-VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA 144 (299)
T ss_dssp HHHHHHHHHHCC----CCSCEEEETCTTTTTHHHHHTTTCC-EEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB
T ss_pred HHHHHHHHhhCC----CCCcEEEEeccCCHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc
Confidence 344445555543 3459999999999999999999875 9999999999999999876554 679999999998
Q ss_pred CC--CcccEEEeCC-----CChhHHHHHHHHHHHhcccCcEEEEEEcCchhhh
Q 004354 128 MQ--GGLDALMEPE-----LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 173 (759)
Q Consensus 128 ~~--gtfD~Ii~~~-----~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~ 173 (759)
++ ++||+|++.. ........+++++.++|+|||++++.++..+...
T Consensus 145 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 197 (299)
T 3g2m_A 145 FALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAE 197 (299)
T ss_dssp CCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHH
T ss_pred CCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCcccc
Confidence 87 8999999753 1222368999999999999999999998876553
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.6e-13 Score=137.68 Aligned_cols=115 Identities=19% Similarity=0.183 Sum_probs=94.0
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~ 129 (759)
.....+...+. ...++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.++++..... ++++++++|+.+++
T Consensus 32 ~~~~~~l~~l~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 109 (267)
T 3kkz_A 32 EVTLKALSFID--NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP 109 (267)
T ss_dssp HHHHHHHTTCC--CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred HHHHHHHHhcc--cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC
Confidence 33334444443 135778999999999999999998866579999999999999999875443 46999999998876
Q ss_pred ---CcccEEEeCCCChhH-HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 ---GGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 ---gtfD~Ii~~~~~~~~-~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++||+|++....++. ...+++++.++|+|||++++.+..
T Consensus 110 ~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 110 FRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp CCTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred CCCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEee
Confidence 789999998765544 889999999999999999998753
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.2e-13 Score=137.34 Aligned_cols=111 Identities=23% Similarity=0.314 Sum_probs=93.0
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ- 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~- 129 (759)
..+...+..++. ++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++. ...+++++++|+.+++
T Consensus 41 ~~~~~~l~~~~~-----~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~d~~~~~~ 112 (242)
T 3l8d_A 41 STIIPFFEQYVK-----KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG--EGPDLSFIKGDLSSLPF 112 (242)
T ss_dssp TTHHHHHHHHSC-----TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT--CBTTEEEEECBTTBCSS
T ss_pred HHHHHHHHHHcC-----CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc--ccCCceEEEcchhcCCC
Confidence 345555666653 578999999999999999999977 5999999999999887764 3468999999999876
Q ss_pred --CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 130 --GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 130 --gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
++||+|++....++. ...+++++.++|+|||++++.++..
T Consensus 113 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 113 ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence 799999997755544 7899999999999999999998654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-12 Score=129.68 Aligned_cols=144 Identities=14% Similarity=0.099 Sum_probs=103.5
Q ss_pred CCCCeEEEECCC-cchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCG-NSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG-~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----gtfD~Ii~~~~~ 141 (759)
.++.+|||+||| +|.++..+++.+..+|+|+|+|+.+++.++++......+++++++|+..+. ++||+|+++...
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~ 133 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY 133 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence 467899999999 999999999883346999999999999999987665558999999964432 789999997432
Q ss_pred hh---------------------HHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcccc-CCCceEEEEEeCCCCCCCC
Q 004354 142 HK---------------------LGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAIPQKSSSEP 199 (759)
Q Consensus 142 ~~---------------------~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~-~~~w~v~~~~~~~~~~~~~ 199 (759)
.+ ....+++++.++|+|||+++++....+.....+.... ..+|.+........
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g----- 208 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVG----- 208 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCC-----
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCC-----
Confidence 11 1478999999999999999997654433333333322 33787777666442
Q ss_pred CceEEEEEEEeCCCcc
Q 004354 200 SLQTFMVVADKENSSV 215 (759)
Q Consensus 200 ~~~~f~~v~~K~~~~~ 215 (759)
.....+++++|..+.+
T Consensus 209 ~~~~~~l~f~~~~~~~ 224 (230)
T 3evz_A 209 TRWRHSLIFFKGISEG 224 (230)
T ss_dssp C-CEEEEEEECCC---
T ss_pred CeEEEEEEEecccccc
Confidence 2445666667654433
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.6e-13 Score=128.12 Aligned_cols=135 Identities=16% Similarity=0.230 Sum_probs=101.1
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-CcccEEEeCCCChhH-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-GGLDALMEPELGHKL- 144 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~~~- 144 (759)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++ .+++++.++| ...+ ++||+|++....++.
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~v~~~~~d-~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK----FDSVITLSDP-KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH----CTTSEEESSG-GGSCTTCEEEEEEESCSTTCS
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh----CCCcEEEeCC-CCCCCCceEEEEEccchhccc
Confidence 4677999999999999999998875 799999999999999887 4689999999 4444 899999998755543
Q ss_pred -HHHHHHHHHHhcccCcEEEEEEcCchh-----------hhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCC
Q 004354 145 -GNQYLSEVKRLLKSGGKFVCLTLAESH-----------VLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKEN 212 (759)
Q Consensus 145 -~~~~l~ei~rvLkpGG~liiit~~~~~-----------~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~ 212 (759)
...+++++.++|+|||++++.++.... ....+...+. ||.+....-. ....|.+++++..
T Consensus 90 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf~~~~~~~~-------~~~~~~l~~~~~~ 161 (170)
T 3i9f_A 90 DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NFVVEKRFNP-------TPYHFGLVLKRKT 161 (170)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TEEEEEEECS-------STTEEEEEEEECC
T ss_pred CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-CcEEEEccCC-------CCceEEEEEecCC
Confidence 789999999999999999999865321 0112222233 6655433321 2457888888865
Q ss_pred Ccc
Q 004354 213 SSV 215 (759)
Q Consensus 213 ~~~ 215 (759)
+.+
T Consensus 162 ~~~ 164 (170)
T 3i9f_A 162 SEG 164 (170)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-12 Score=130.66 Aligned_cols=113 Identities=15% Similarity=0.119 Sum_probs=87.2
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC--
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-- 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~-- 128 (759)
.+...+...+. ....++.+|||+|||+|.++..+++.. ...|+|+|+|+.+++.|.++... ..++.++++|+...
T Consensus 42 ~l~~~~~~~l~-~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-~~~v~~~~~d~~~~~~ 119 (210)
T 1nt2_A 42 KLAAMILKGHR-LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLFDASKPWK 119 (210)
T ss_dssp HHHHHHHTSCC-CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-CSSEEEECSCTTCGGG
T ss_pred HHHHHHHhhcc-cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-CCCeEEEEcCCCCchh
Confidence 34444444443 334578899999999999999998863 23699999999998877766543 35789999998774
Q ss_pred --C--CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 129 --Q--GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 129 --~--gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+ ++||+|+++...+.....++++++++|||||++++..
T Consensus 120 ~~~~~~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 120 YSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp TTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccccceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 2 7899999985544446677999999999999999985
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.3e-13 Score=136.13 Aligned_cols=115 Identities=19% Similarity=0.200 Sum_probs=93.0
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~ 128 (759)
......+...+.. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++....+ .+++++++|+.++
T Consensus 31 ~~~~~~~l~~l~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 108 (257)
T 3f4k_A 31 PEATRKAVSFINE--LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL 108 (257)
T ss_dssp HHHHHHHHTTSCC--CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHHHhc--CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence 3444444444422 25678999999999999999999865579999999999999998875543 3499999999887
Q ss_pred C---CcccEEEeCCCChhH-HHHHHHHHHHhcccCcEEEEEEc
Q 004354 129 Q---GGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 129 ~---gtfD~Ii~~~~~~~~-~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+ ++||+|++....++. ...+++++.++|+|||++++.+.
T Consensus 109 ~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 109 PFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp SSCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 6 799999997755443 78999999999999999999874
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=131.02 Aligned_cols=96 Identities=25% Similarity=0.283 Sum_probs=83.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK- 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~- 143 (759)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++. ++.+.++|+.+++ ++||+|++....++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 115 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-----GRPVRTMLFHQLDAIDAYDAVWAHACLLHV 115 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----TSCCEECCGGGCCCCSCEEEEEECSCGGGS
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-----CCceEEeeeccCCCCCcEEEEEecCchhhc
Confidence 3578999999999999999999876 5999999999999998886 5788999998877 89999999875443
Q ss_pred ---HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 144 ---LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 144 ---~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
....+++++.++|+|||++++....
T Consensus 116 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 116 PRDELADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 4779999999999999999988653
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=139.13 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=87.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC---CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ---GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~---gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|.++..+++. |. +|+|+|+|+.+++.++++.... .++++++++|+.+++ ++||+|++...
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 159 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 159 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecch
Confidence 57789999999999999999987 66 6999999999999998886433 257999999999876 78999999775
Q ss_pred ChhH--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 141 GHKL--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 141 ~~~~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.++. ...+++++.++|||||++++.+...
T Consensus 160 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 160 FLHSPDKLKVFQECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 5543 7899999999999999999997643
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=130.68 Aligned_cols=113 Identities=13% Similarity=0.055 Sum_probs=91.9
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-C-CcEEEEeecccC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-S-DMRWRVMDMTSM 128 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~-~i~f~~~D~~~~ 128 (759)
..+...+...+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+ + +++++++|+.+.
T Consensus 41 ~~~~~~~l~~l~~---~~~~~vLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 116 (204)
T 3njr_A 41 SPMRALTLAALAP---RRGELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA 116 (204)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred HHHHHHHHHhcCC---CCCCEEEEecCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence 3455556666654 5778999999999999999999854 69999999999999998875443 3 699999999883
Q ss_pred -C--CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 129 -Q--GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 129 -~--gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
. +.||+|++.... ... +++++.++|+|||++++.+....
T Consensus 117 ~~~~~~~D~v~~~~~~--~~~-~l~~~~~~LkpgG~lv~~~~~~~ 158 (204)
T 3njr_A 117 LADLPLPEAVFIGGGG--SQA-LYDRLWEWLAPGTRIVANAVTLE 158 (204)
T ss_dssp GTTSCCCSEEEECSCC--CHH-HHHHHHHHSCTTCEEEEEECSHH
T ss_pred cccCCCCCEEEECCcc--cHH-HHHHHHHhcCCCcEEEEEecCcc
Confidence 3 689999987643 244 99999999999999999887654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.42 E-value=8.5e-13 Score=133.53 Aligned_cols=105 Identities=26% Similarity=0.323 Sum_probs=89.7
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCC--Ch
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPEL--GH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~--~~ 142 (759)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++......+++++++|+.+++ ++||+|++... .+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~ 116 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 116 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhC
Confidence 478999999999999999998876 7999999999999999887665678999999998875 68999999765 33
Q ss_pred h--HHHHHHHHHHHhcccCcEEEEEEcCchhhh
Q 004354 143 K--LGNQYLSEVKRLLKSGGKFVCLTLAESHVL 173 (759)
Q Consensus 143 ~--~~~~~l~ei~rvLkpGG~liiit~~~~~~~ 173 (759)
+ ....+++++.++|+|||++++.....+...
T Consensus 117 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~ 149 (227)
T 1ve3_A 117 EPLELNQVFKEVRRVLKPSGKFIMYFTDLRELL 149 (227)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHG
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEecChHHHH
Confidence 2 378899999999999999999987654433
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-13 Score=139.07 Aligned_cols=110 Identities=11% Similarity=0.168 Sum_probs=91.3
Q ss_pred HHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---Cccc
Q 004354 58 ISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLD 133 (759)
Q Consensus 58 ~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD 133 (759)
...+......++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.++++.... ++++++++|+.+++ ++||
T Consensus 45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN-NKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC-CCeEEEECccccCCCCCCcEE
Confidence 33343333467889999999999999999987 55 5999999999999998887544 78999999998876 8999
Q ss_pred EEEeCCCCh----hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 134 ALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 134 ~Ii~~~~~~----~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+|++....+ .....+++++.++|+|||++++.++..
T Consensus 123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 999976443 348899999999999999999998643
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-12 Score=131.62 Aligned_cols=116 Identities=20% Similarity=0.241 Sum_probs=93.3
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~ 129 (759)
......+...+.. ..++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.++++..... +++++++|+.+++
T Consensus 29 ~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~ 105 (234)
T 3dtn_A 29 DDFYGVSVSIASV--DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKYD 105 (234)
T ss_dssp HHHHHHHHHTCCC--SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTCC
T ss_pred HHHHHHHHHHhhc--CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhccC
Confidence 3344455555542 2467899999999999999999883 2369999999999999998875443 8999999999887
Q ss_pred --CcccEEEeCCCChhH----HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 130 --GGLDALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 130 --gtfD~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
++||+|++....++. ...+++++.++|+|||++++.++..
T Consensus 106 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 106 FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp CCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred CCCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 899999998755443 3469999999999999999988653
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.8e-13 Score=137.57 Aligned_cols=128 Identities=17% Similarity=0.109 Sum_probs=98.1
Q ss_pred HHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHH
Q 004354 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (759)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a 107 (759)
.++|+..+.... . .|......+...+..++ .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+
T Consensus 19 a~~yd~~~~~~~--~--~~~~~~~~~~~~l~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a 88 (263)
T 3pfg_A 19 AELYDLVHQGKG--K--DYHREAADLAALVRRHS-----PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIA 88 (263)
T ss_dssp HHHHHHHHHHTT--C--CHHHHHHHHHHHHHHHC-----TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHH
T ss_pred HHHHHHHhhcCC--C--CHHHHHHHHHHHHHhhC-----CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHH
Confidence 567888776431 1 12222233444444443 2468999999999999999998876 599999999999999
Q ss_pred HHHhccCCCCcEEEEeecccCC--CcccEEEeCC-CChh-----HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 108 LRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPE-LGHK-----LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 108 ~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~-~~~~-----~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+++. ++++++++|+.+++ ++||+|++.. ..++ ....+++++.++|+|||++++..+..
T Consensus 89 ~~~~----~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 154 (263)
T 3pfg_A 89 RRRN----PDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWF 154 (263)
T ss_dssp HHHC----TTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred HhhC----CCCEEEECChHHCCccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 8875 37999999999887 8999999975 3332 36789999999999999999976543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=137.27 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=86.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh--
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK-- 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~-- 143 (759)
++.+|||+|||+|.++..+++.|+ +|+|+|+|+.+++.++++......++++.++|+.+.+ ++||+|++....++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~~~~~~~~~ 198 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTVVFMFLN 198 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEEECSSGGGSC
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEEEccchhhCC
Confidence 578999999999999999999987 6999999999999999987665558999999998876 89999999875543
Q ss_pred --HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 144 --LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 144 --~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
....+++++.++|+|||+++++..
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 199 RERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 377999999999999999887754
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.41 E-value=9.1e-13 Score=136.81 Aligned_cols=108 Identities=13% Similarity=0.190 Sum_probs=90.0
Q ss_pred HHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC---Ccc
Q 004354 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---GGL 132 (759)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~---gtf 132 (759)
+...+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++..... ++++|+++|+.+++ ++|
T Consensus 29 l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~f 104 (260)
T 1vl5_A 29 LMQIAAL---KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 104 (260)
T ss_dssp HHHHHTC---CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHhCC---CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCE
Confidence 4444443 5778999999999999999998865 79999999999999998875433 57999999998876 799
Q ss_pred cEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 133 DALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 133 D~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
|+|++....++. ...+++++.++|+|||++++.+..
T Consensus 105 D~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 105 HIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 999998766554 789999999999999999997653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=132.92 Aligned_cols=108 Identities=17% Similarity=0.259 Sum_probs=91.3
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---Ccc
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGL 132 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtf 132 (759)
.+..++.. .++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.++++... .++++.++|+.+++ ++|
T Consensus 34 ~l~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~f 108 (243)
T 3bkw_A 34 ALRAMLPE---VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD--TGITYERADLDKLHLPQDSF 108 (243)
T ss_dssp HHHHHSCC---CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS--SSEEEEECCGGGCCCCTTCE
T ss_pred HHHHhccc---cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc--CCceEEEcChhhccCCCCCc
Confidence 45566654 46789999999999999999998875799999999999999887633 47999999998876 789
Q ss_pred cEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 133 DALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 133 D~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
|+|++....++. ...+++++.++|+|||++++.+..
T Consensus 109 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 109 DLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 999997755443 789999999999999999998864
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.8e-13 Score=139.04 Aligned_cols=105 Identities=25% Similarity=0.436 Sum_probs=89.6
Q ss_pred HHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccE
Q 004354 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDA 134 (759)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~ 134 (759)
+...+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++. +++++.++|+.+++ ++||+
T Consensus 49 l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~fD~ 120 (279)
T 3ccf_A 49 LLQLLNP---QPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY----PHLHFDVADARNFRVDKPLDA 120 (279)
T ss_dssp HHHHHCC---CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----TTSCEEECCTTTCCCSSCEEE
T ss_pred HHHHhCC---CCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC----CCCEEEECChhhCCcCCCcCE
Confidence 4455543 4678999999999999999998655 6999999999999988775 67999999999887 89999
Q ss_pred EEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 135 LMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 135 Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
|++....++. ...+++++.++|+|||++++.+...
T Consensus 121 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 121 VFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 9998766653 7899999999999999999987654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8.1e-12 Score=127.71 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=85.3
Q ss_pred hcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccc----CC--Cccc
Q 004354 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS----MQ--GGLD 133 (759)
Q Consensus 61 l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~----~~--gtfD 133 (759)
+......++.+|||+|||+|.++..+++. |...|+|+|+|+.+++.+++++... +++.++++|+.+ .+ ++||
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D 145 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTSCCEE
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCcccccccCccEE
Confidence 43333457789999999999999999987 5457999999999999998886544 789999999987 44 6899
Q ss_pred EEEeCCCChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 134 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 134 ~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
+|++..........+++++.++|+|||++++.
T Consensus 146 ~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 146 VIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 99965433334578899999999999999986
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=132.18 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=97.1
Q ss_pred cchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccc
Q 004354 48 AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (759)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~ 127 (759)
..+......+..++... ..++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++......++++.++|+.+
T Consensus 18 ~~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~ 95 (246)
T 1y8c_A 18 VDYKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN 95 (246)
T ss_dssp CCHHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG
T ss_pred ccHHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 34455556666666541 12678999999999999999998876 59999999999999998876555589999999988
Q ss_pred CC--CcccEEEeCC-CCh-----hHHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 128 MQ--GGLDALMEPE-LGH-----KLGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 128 ~~--gtfD~Ii~~~-~~~-----~~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++ ++||+|++.. ..+ .....+++++.++|+|||++++......
T Consensus 96 ~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 146 (246)
T 1y8c_A 96 LNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYY 146 (246)
T ss_dssp CCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred CCccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHH
Confidence 76 7899999976 433 3478999999999999999998766543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5e-13 Score=137.07 Aligned_cols=102 Identities=18% Similarity=0.125 Sum_probs=85.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC--C---CcccEEEe-CCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--Q---GGLDALME-PEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~--~---gtfD~Ii~-~~~ 140 (759)
.++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.|+++......+++++++|+.++ + ++||+|++ ...
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence 36789999999999999999877776799999999999999998866667899999999876 4 78999999 221
Q ss_pred -----Ch-hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 141 -----GH-KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 141 -----~~-~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.+ .....++++++|+|||||++++..+.
T Consensus 139 ~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred cchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 11 12567899999999999999988754
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=133.91 Aligned_cols=114 Identities=15% Similarity=0.040 Sum_probs=92.9
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~ 128 (759)
+.....+...+.. .++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++....+ .+++++++|+.++
T Consensus 22 ~~~~~~l~~~~~~---~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 98 (256)
T 1nkv_A 22 EEKYATLGRVLRM---KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 98 (256)
T ss_dssp HHHHHHHHHHTCC---CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC
Confidence 3444555555543 6788999999999999999988732369999999999999998875443 4799999999887
Q ss_pred C--CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 129 Q--GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 129 ~--gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+ ++||+|++....++. ...+++++.++|||||++++.+.
T Consensus 99 ~~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 99 VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CcCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence 6 889999997655543 78999999999999999998764
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-12 Score=131.53 Aligned_cols=123 Identities=21% Similarity=0.277 Sum_probs=102.7
Q ss_pred cc-ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccCCCCcE
Q 004354 43 SF-EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMR 119 (759)
Q Consensus 43 ~~-eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~ 119 (759)
.| .|......+...+..-+..+.++|+.+|||+|||+|.++.++++. |. ..|+|+|+|+.|++.+++++. ..+++.
T Consensus 51 e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~-~~~ni~ 129 (233)
T 4df3_A 51 EYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR-DRRNIF 129 (233)
T ss_dssp EEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHST-TCTTEE
T ss_pred eeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhH-hhcCee
Confidence 44 477766677777777666666789999999999999999999986 54 369999999999999988763 457899
Q ss_pred EEEeecccCC------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 120 WRVMDMTSMQ------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 120 f~~~D~~~~~------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.+..|..+.. +.+|+|++....++....++.++.++|||||++++..
T Consensus 130 ~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 130 PILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEESCTTCGGGGTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeccCccccccccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 9999987654 7899999877667778899999999999999998864
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=130.52 Aligned_cols=109 Identities=16% Similarity=0.205 Sum_probs=89.3
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--Cccc
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLD 133 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD 133 (759)
.+...+.. ..++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.+++ ...++++++++|+.++. ++||
T Consensus 36 ~~~~~l~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~---~~~~~~~~~~~d~~~~~~~~~~D 109 (218)
T 3ou2_A 36 AALERLRA--GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR---HGLDNVEFRQQDLFDWTPDRQWD 109 (218)
T ss_dssp HHHHHHTT--TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG---GCCTTEEEEECCTTSCCCSSCEE
T ss_pred HHHHHHhc--CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh---cCCCCeEEEecccccCCCCCcee
Confidence 34444432 14567999999999999999999876 59999999999998876 23367999999998874 8999
Q ss_pred EEEeCCCChhH----HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 134 ALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 134 ~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+|++....++. ...+++++.++|+|||.+++.++..+
T Consensus 110 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 150 (218)
T 3ou2_A 110 AVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDH 150 (218)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred EEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 99998755443 48999999999999999999987653
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=127.69 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=93.8
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc-
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS- 127 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~- 127 (759)
..+...+...+.. .++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++++..... .++++.++|+.+
T Consensus 19 ~~~~~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 94 (192)
T 1l3i_A 19 MEVRCLIMCLAEP---GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA 94 (192)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh
Confidence 3555666666654 577899999999999999999887 679999999999999988775433 478999999876
Q ss_pred CC--CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 128 MQ--GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 128 ~~--gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++ +.||+|++....+ ....+++++.++|+|||++++.+....
T Consensus 95 ~~~~~~~D~v~~~~~~~-~~~~~l~~~~~~l~~gG~l~~~~~~~~ 138 (192)
T 1l3i_A 95 LCKIPDIDIAVVGGSGG-ELQEILRIIKDKLKPGGRIIVTAILLE 138 (192)
T ss_dssp HTTSCCEEEEEESCCTT-CHHHHHHHHHHTEEEEEEEEEEECBHH
T ss_pred cccCCCCCEEEECCchH-HHHHHHHHHHHhcCCCcEEEEEecCcc
Confidence 33 6899999976533 358899999999999999999887644
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.7e-12 Score=127.21 Aligned_cols=121 Identities=16% Similarity=0.219 Sum_probs=92.0
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~ 123 (759)
|..........+...+......++.+|||+|||+|.++..|++. | ..+|+|+|+|+.+++.+.+++... ++++++++
T Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~ 133 (233)
T 2ipx_A 55 WNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIE 133 (233)
T ss_dssp CCTTTCHHHHHHHTTCSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECS
T ss_pred ecccchhHHHHHHhHHheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEc
Confidence 54443344334443344333467889999999999999999987 3 347999999999988887766443 68999999
Q ss_pred ecccC---C---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 124 DMTSM---Q---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 124 D~~~~---~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|+.+. + ++||+|+++....+....++.++.++|+|||++++...
T Consensus 134 d~~~~~~~~~~~~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 134 DARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CTTCGGGGGGGCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCChhhhcccCCcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 99873 2 78999999766545567789999999999999998654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-11 Score=131.06 Aligned_cols=124 Identities=14% Similarity=0.153 Sum_probs=94.2
Q ss_pred CCCCCeEEEECCCcchhHHH-HHHh-CCCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC-CcccEEEeCCCC
Q 004354 66 SSPPPQILVPGCGNSRLSEH-LYDA-GFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ-GGLDALMEPELG 141 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~-L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~-gtfD~Ii~~~~~ 141 (759)
..++.+|||||||+|.++.. +++. |. +|+|+|+|+.+++.|++++.. ...+++|+++|+.+++ ++||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT-
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC-
Confidence 37889999999999987644 4443 54 599999999999999998754 2368999999999887 89999998654
Q ss_pred hhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcc----ccCCCceEEEEEeCC
Q 004354 142 HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP----KFRFGWKMSVHAIPQ 193 (759)
Q Consensus 142 ~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~----~~~~~w~v~~~~~~~ 193 (759)
.....++++++.|+|||||++++...... +..++. ....+|.......+.
T Consensus 198 ~~d~~~~l~el~r~LkPGG~Lvv~~~~~~--r~~l~~~v~~~~~~gf~~~~~~~p~ 251 (298)
T 3fpf_A 198 AEPKRRVFRNIHRYVDTETRIIYRTYTGM--RAILYAPVSDDDITGFRRAGVVLPS 251 (298)
T ss_dssp CSCHHHHHHHHHHHCCTTCEEEEEECCGG--GGGSSCCCCTGGGTTEEEEEEECCC
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEcCcch--hhhccccCChhhhhhhhheeEECCC
Confidence 23467999999999999999999875321 111111 123388887776665
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.5e-12 Score=128.76 Aligned_cols=111 Identities=20% Similarity=0.185 Sum_probs=88.4
Q ss_pred HHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC------CCcEEEEeecc
Q 004354 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR------SDMRWRVMDMT 126 (759)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~------~~i~f~~~D~~ 126 (759)
...+..++.. .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.+++++.... .+++++++|+.
T Consensus 18 ~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (217)
T 3jwh_A 18 MNGVVAALKQ---SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT 94 (217)
T ss_dssp HHHHHHHHHH---TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence 3344455543 4678999999999999999998754 579999999999999998875332 27999999997
Q ss_pred cCC---CcccEEEeCCCChhH----HHHHHHHHHHhcccCcEEEEEEc
Q 004354 127 SMQ---GGLDALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 127 ~~~---gtfD~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~liiit~ 167 (759)
..+ ++||+|++....++. ...+++++.++|+|||.+++...
T Consensus 95 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 95 YQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp SCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred cccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 666 789999998755433 58999999999999997666554
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.6e-13 Score=142.06 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=82.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCC-------CcEEEEeec------ccC----C-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-------DMRWRVMDM------TSM----Q- 129 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~-------~i~f~~~D~------~~~----~- 129 (759)
++.+|||||||+|..+..++..+..+|+|+|+|+.||+.|++++..... +++|.+.|+ .++ +
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 4689999999999877777777666799999999999999998743322 267888888 222 2
Q ss_pred CcccEEEeCCCChh-----HHHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 130 GGLDALMEPELGHK-----LGNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 130 gtfD~Ii~~~~~~~-----~~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
++||+|+|....|. ....++++++++|||||+|++.+......
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~ 175 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKL 175 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence 79999999764432 25799999999999999999998765443
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=136.97 Aligned_cols=108 Identities=20% Similarity=0.215 Sum_probs=90.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC----CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ----GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~----gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.++++..... .+++++++|+.+.+ ++||+|++...
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 4678999999999999999988887679999999999999998875433 35899999998764 78999999765
Q ss_pred Chh------HHHHHHHHHHHhcccCcEEEEEEcCchhhhh
Q 004354 141 GHK------LGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 174 (759)
Q Consensus 141 ~~~------~~~~~l~ei~rvLkpGG~liiit~~~~~~~~ 174 (759)
.++ ....+++++.++|+|||++++.+........
T Consensus 143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 182 (298)
T 1ri5_A 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILE 182 (298)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence 433 3789999999999999999999877654443
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=132.31 Aligned_cols=98 Identities=18% Similarity=0.266 Sum_probs=86.1
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.....+++++.++|+.+++ ++||+|++....++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 116 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHL 116 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhh
Confidence 4678999999999999999998865 5999999999999999887444578999999998876 78999999876655
Q ss_pred H--HHHHHHHHHHhcccCcEEEEE
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liii 165 (759)
. ...+++++.++|+|||++++.
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 117 VPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHCCCCcEEEEE
Confidence 4 789999999999999999887
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=132.99 Aligned_cols=127 Identities=17% Similarity=0.103 Sum_probs=94.8
Q ss_pred CCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHH
Q 004354 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (759)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~ 105 (759)
...+||..+.... ......+...+..++.. ..++.+|||||||+|.++..+++.|.. |+|+|+|+.+++
T Consensus 9 ~~~~~y~~~~~~~--------~~~~~~~~~~~~~~l~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~-v~gvD~s~~~~~ 77 (240)
T 3dli_A 9 HTSDYYFLFEEKF--------RGSRELVKARLRRYIPY--FKGCRRVLDIGCGRGEFLELCKEEGIE-SIGVDINEDMIK 77 (240)
T ss_dssp ---CHHHHHHHHH--------TCCHHHHHHHHGGGGGG--TTTCSCEEEETCTTTHHHHHHHHHTCC-EEEECSCHHHHH
T ss_pred chHHHHHHHHHHh--------CCCHHHHHHHHHHHHhh--hcCCCeEEEEeCCCCHHHHHHHhCCCc-EEEEECCHHHHH
Confidence 3455666655432 22333444445555442 145689999999999999999998875 999999999998
Q ss_pred HHHHHhccCCCCcEEEEeecccC----C-CcccEEEeCCCChhH----HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 106 DMLRRNVRDRSDMRWRVMDMTSM----Q-GGLDALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 106 ~a~~r~~~~~~~i~f~~~D~~~~----~-gtfD~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
.++++ ++++++|+.+. + ++||+|++....++. ...+++++.++|||||++++.+....
T Consensus 78 ~a~~~-------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 78 FCEGK-------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPT 144 (240)
T ss_dssp HHHTT-------SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred HHHhh-------cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 87654 78999998774 2 899999997755443 58999999999999999999887654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-12 Score=128.69 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=85.6
Q ss_pred CCCCeEEEECCCcchhH-HHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLS-EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls-~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
.++.+|||+|||+|.++ ..+...|. +|+|+|+|+.+++.++++......++++.++|+.+++ ++||+|++....+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 45789999999999984 45555565 6999999999999999887555568999999998876 7899999976433
Q ss_pred ----hHHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 143 ----KLGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 143 ----~~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
.....+++++.++|+|||++++.++..+
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 3488999999999999999999987654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-12 Score=123.59 Aligned_cols=131 Identities=9% Similarity=0.102 Sum_probs=99.4
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~ 129 (759)
..+...+...+.. .++.+|||+|||+|.++..+++ +..+++|+|+|+.+++.++++..... ++++++++|+.+..
T Consensus 21 ~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~ 96 (183)
T 2yxd_A 21 EEIRAVSIGKLNL---NKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVL 96 (183)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHG
T ss_pred HHHHHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccc
Confidence 3455566666654 5678999999999999999988 45579999999999999998875443 57999999987632
Q ss_pred --CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcccc-CCCceEEEEE
Q 004354 130 --GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHA 190 (759)
Q Consensus 130 --gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~-~~~w~v~~~~ 190 (759)
+.||+|++... .....+++++.++ |||.+++.+........ +.... ..+|.++...
T Consensus 97 ~~~~~D~i~~~~~--~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~-~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 97 DKLEFNKAFIGGT--KNIEKIIEILDKK--KINHIVANTIVLENAAK-IINEFESRGYNVDAVN 155 (183)
T ss_dssp GGCCCSEEEECSC--SCHHHHHHHHHHT--TCCEEEEEESCHHHHHH-HHHHHHHTTCEEEEEE
T ss_pred cCCCCcEEEECCc--ccHHHHHHHHhhC--CCCEEEEEecccccHHH-HHHHHHHcCCeEEEEE
Confidence 68999999876 4578899999999 99999999876543322 22222 2357776654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.1e-13 Score=135.71 Aligned_cols=100 Identities=17% Similarity=0.125 Sum_probs=83.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCCC-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPEL- 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~- 140 (759)
.++.+|||||||+|..+..+++.+..+||+||+|+.+++.|+++......++.++.+|+.+.. ++||.|+....
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~ 138 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeee
Confidence 368899999999999999998876667999999999999999998777778899999876543 78999986431
Q ss_pred -----Ch-hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 141 -----GH-KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 141 -----~~-~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.+ .....+++++.|+|||||+|++..
T Consensus 139 ~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 11 237889999999999999998754
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-12 Score=127.84 Aligned_cols=96 Identities=20% Similarity=0.262 Sum_probs=84.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChhH
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHKL 144 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~ 144 (759)
++.+|||+|||+|.++..+ ++.+|+|+|+|+.+++.++++. ++++++++|+.+++ ++||+|++....++.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEALPFPGESFDVVLLFTTLEFV 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSCCSCSSCEEEEEEESCTTTC
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccCCCCCCcEEEEEEcChhhhc
Confidence 6789999999999999887 6656999999999999998875 67899999998876 789999998765543
Q ss_pred --HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 145 --GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 145 --~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
...+++++.++|+|||++++.++...
T Consensus 109 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 109 EDVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 78999999999999999999987654
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-12 Score=131.72 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=91.6
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC---Cc
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ---GG 131 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~---gt 131 (759)
.+...+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.... .+++++.++|+.+++ ++
T Consensus 12 ~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 12 LMIKTAEC---RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHTC---CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred hHHHHhCc---CCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 34445544 6788999999999999999998865 6999999999999998876443 357999999998876 78
Q ss_pred ccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 132 LDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 132 fD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
||+|++....++. ...+++++.++|+|||++++.+...
T Consensus 88 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred EEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 9999998755443 7899999999999999999987643
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.4e-12 Score=125.18 Aligned_cols=102 Identities=13% Similarity=0.179 Sum_probs=87.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-CcccEEEeCCCChhH
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-GGLDALMEPELGHKL 144 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~-gtfD~Ii~~~~~~~~ 144 (759)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++..... .++++.++|+.+.. ++||+|+++...+ .
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~-~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE-I 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH-H
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH-H
Confidence 3678999999999999999998877789999999999999998875443 34999999998876 8999999976443 3
Q ss_pred HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 145 GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 145 ~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
...+++++.++|+|||++++.++..
T Consensus 138 ~~~~l~~~~~~L~~gG~l~~~~~~~ 162 (205)
T 3grz_A 138 LLDLIPQLDSHLNEDGQVIFSGIDY 162 (205)
T ss_dssp HHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred HHHHHHHHHHhcCCCCEEEEEecCc
Confidence 6889999999999999999986654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-12 Score=126.38 Aligned_cols=102 Identities=12% Similarity=0.022 Sum_probs=87.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-----CcccEEEeCCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-----GGLDALMEPELG 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~-----gtfD~Ii~~~~~ 141 (759)
++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.+++++.... .+++++++|+.+.. ++||+|+++...
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 578999999999999998888888789999999999999998875433 57999999998753 789999997644
Q ss_pred hh---HHHHHHHHHHH--hcccCcEEEEEEcCc
Q 004354 142 HK---LGNQYLSEVKR--LLKSGGKFVCLTLAE 169 (759)
Q Consensus 142 ~~---~~~~~l~ei~r--vLkpGG~liiit~~~ 169 (759)
++ ....++.++.+ +|+|||++++.+...
T Consensus 124 ~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 124 NVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 43 48899999999 999999999987543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.2e-12 Score=133.28 Aligned_cols=110 Identities=11% Similarity=0.120 Sum_probs=91.1
Q ss_pred hhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCCCcccEEE
Q 004354 60 LIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQGGLDALM 136 (759)
Q Consensus 60 ~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~gtfD~Ii 136 (759)
.+......++.+|||||||+|.++..+++. |. +|+|+|+|+.+++.++++....+ .++++.++|+.++.++||+|+
T Consensus 64 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~ 142 (302)
T 3hem_A 64 ALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIV 142 (302)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEE
T ss_pred HHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccEEE
Confidence 333333467889999999999999999988 74 69999999999999999875433 369999999988888999999
Q ss_pred eCCCChh-----------HHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 137 EPELGHK-----------LGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 137 ~~~~~~~-----------~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+....++ ....+++++.++|||||++++.++..+
T Consensus 143 ~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 143 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp EESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred EcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 9764333 257999999999999999999887643
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=135.65 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=92.3
Q ss_pred chhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC
Q 004354 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (759)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~ 128 (759)
.+..+...+...+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++ ++++|+++|+.++
T Consensus 18 ~~~~~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~-----~~~~~~~~d~~~~ 88 (261)
T 3ege_A 18 PDIRIVNAIINLLNL---PKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVH-----PQVEWFTGYAENL 88 (261)
T ss_dssp CCHHHHHHHHHHHCC---CTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCC-----TTEEEECCCTTSC
T ss_pred ccHHHHHHHHHHhCC---CCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhc-----cCCEEEECchhhC
Confidence 344566667777754 5778999999999999999998765 699999999888765433 3899999999887
Q ss_pred C---CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 129 Q---GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 129 ~---gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+ ++||+|++....++. ...+++++.++|| ||++++.++..+
T Consensus 89 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~ 134 (261)
T 3ege_A 89 ALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIR 134 (261)
T ss_dssp CSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGG
T ss_pred CCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCc
Confidence 6 799999998765543 8899999999999 999999987654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=121.46 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=93.2
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CC--cEEEEeecccC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SD--MRWRVMDMTSM 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~--i~f~~~D~~~~ 128 (759)
.....+...+.. .++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.++++..... .+ +++.++|+.+.
T Consensus 39 ~~~~~l~~~~~~---~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~ 114 (194)
T 1dus_A 39 KGTKILVENVVV---DKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN 114 (194)
T ss_dssp HHHHHHHHHCCC---CTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred hHHHHHHHHccc---CCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc
Confidence 344556666654 577899999999999999998884 469999999999999998875433 34 99999999875
Q ss_pred C--CcccEEEeCCCChh---HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 129 Q--GGLDALMEPELGHK---LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 129 ~--gtfD~Ii~~~~~~~---~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
. ++||+|+++...++ ....+++++.++|+|||.+++.+...
T Consensus 115 ~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 115 VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 4 78999999775443 37899999999999999999998764
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-12 Score=134.38 Aligned_cols=102 Identities=13% Similarity=0.188 Sum_probs=88.3
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC----CcccEEEeCCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ----GGLDALMEPELG 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~----gtfD~Ii~~~~~ 141 (759)
++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.++++....+ ++++++++|+.+++ ++||+|++....
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 467999999999999999999876 59999999999999998875543 57999999998876 899999998765
Q ss_pred hhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 142 HKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 142 ~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++. ...+++++.++|+|||++++.++...
T Consensus 147 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (285)
T 4htf_A 147 EWVADPRSVLQTLWSVLRPGGVLSLMFYNAH 177 (285)
T ss_dssp GGCSCHHHHHHHHHHTEEEEEEEEEEEEBHH
T ss_pred hcccCHHHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 543 78999999999999999999987654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-12 Score=133.09 Aligned_cols=101 Identities=19% Similarity=0.321 Sum_probs=87.1
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC---CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~---gtfD~Ii~~~~~ 141 (759)
.++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.++++..... +++++.+.|+.+++ ++||+|++....
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL 115 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence 578899999999999999999884 2469999999999999998875433 57999999999876 899999998765
Q ss_pred hhH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 142 HKL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 142 ~~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
++. ...+++++.++|+|||++++.+.
T Consensus 116 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 116 EHLQSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 543 67999999999999999999864
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-12 Score=128.99 Aligned_cols=128 Identities=18% Similarity=0.204 Sum_probs=97.4
Q ss_pred HHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHH
Q 004354 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (759)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a 107 (759)
.++|+..+.... . .|......+...+..++ .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+
T Consensus 9 a~~yd~~~~~~~--~--~~~~~~~~~~~~l~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a 78 (239)
T 3bxo_A 9 ADVYDLFYLGRG--K--DYAAEASDIADLVRSRT-----PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHA 78 (239)
T ss_dssp HHHHHHHHHHHT--C--CHHHHHHHHHHHHHHHC-----TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHH
T ss_pred HHHHHHHhhccH--h--hHHHHHHHHHHHHHHhc-----CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHH
Confidence 678888886541 1 12222223344444444 3568999999999999999998866 699999999999999
Q ss_pred HHHhccCCCCcEEEEeecccCC--CcccEEEeCC-CCh-----hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 108 LRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPE-LGH-----KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 108 ~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~-~~~-----~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+++. +++++.++|+.+++ ++||+|+|.. ..+ .....+++++.++|+|||++++.++..
T Consensus 79 ~~~~----~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 79 RKRL----PDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp HHHC----TTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred HHhC----CCCEEEECCHHHcccCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 8775 56899999998876 7899999643 222 337899999999999999999886544
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-12 Score=133.81 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=81.2
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeec---ccCC
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM---TSMQ 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~---~~~~ 129 (759)
....+...+.. .++.+|||+|||+|.++..|++.|. +|+|+|+|+.|++.++++.........+...+. ....
T Consensus 33 ~~~~il~~l~l---~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~ 108 (261)
T 3iv6_A 33 DRENDIFLENI---VPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELA 108 (261)
T ss_dssp HHHHHHHTTTC---CTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGT
T ss_pred HHHHHHHhcCC---CCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccC
Confidence 33444555543 6788999999999999999999987 599999999999999988754422223332222 1112
Q ss_pred CcccEEEeCCCChh----HHHHHHHHHHHhcccCcEEEEEE
Q 004354 130 GGLDALMEPELGHK----LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 130 gtfD~Ii~~~~~~~----~~~~~l~ei~rvLkpGG~liiit 166 (759)
++||+|+++...++ ....+++++.++| |||++++..
T Consensus 109 ~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 109 GHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp TCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred CCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 78999999775443 3678999999999 999998775
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.7e-12 Score=130.83 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=85.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~ 142 (759)
.++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.++++ .+++++.++|+.+++ ++||+|++....+
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~----~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 106 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVN-VITGIDSDDDMLEKAADR----LPNTNFGKADLATWKPAQKADLLYANAVFQ 106 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTT-SEEEEESCHHHHHHHHHH----STTSEEEECCTTTCCCSSCEEEEEEESCGG
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHh----CCCcEEEECChhhcCccCCcCEEEEeCchh
Confidence 57789999999999999999887 44 599999999999998877 367999999998876 7899999987666
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+. ...+++++.++|+|||++++.+..
T Consensus 107 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 107 WVPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp GSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred hCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 54 789999999999999999998864
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-11 Score=130.85 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=90.9
Q ss_pred HhhcCCCCCCCCeEEEECCCcchhHHHHHH-hCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCCCcccEE
Q 004354 59 SLIGAPTSSPPPQILVPGCGNSRLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQGGLDAL 135 (759)
Q Consensus 59 ~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~-~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~gtfD~I 135 (759)
..+......++.+|||||||+|.++..+++ .|. +|+|+|+|+.+++.++++....+ .++++.++|+.+++++||+|
T Consensus 55 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v 133 (287)
T 1kpg_A 55 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRI 133 (287)
T ss_dssp HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEE
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEE
Confidence 334433446788999999999999999984 466 69999999999999998875433 47999999998888899999
Q ss_pred EeCCCChh----HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 136 MEPELGHK----LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 136 i~~~~~~~----~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
++....++ ....+++++.++|||||++++.++..
T Consensus 134 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 134 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred EEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 99765443 37899999999999999999988654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-13 Score=141.81 Aligned_cols=147 Identities=10% Similarity=0.119 Sum_probs=100.7
Q ss_pred ccccccc-cCCCCHHHHHHHHhhcCCC-Ccc-----ccccchh-hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHH
Q 004354 16 TDLLQTL-GDFTSKENWDKFFTIRGIG-DSF-----EWYAEWP-QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLY 87 (759)
Q Consensus 16 ~~lP~~~-~~f~~~~yWd~~y~~~~~~-~~~-----eW~~~~~-~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~ 87 (759)
..+|..+ .+.....||++.+...... ..+ .|+...+ .+...+...+.. ..++.+|||+|||+|.++..++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~vLD~gcG~G~~~~~la 97 (241)
T 3gdh_A 20 NGLPPEIAAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQ--SFKCDVVVDAFCGVGGNTIQFA 97 (241)
T ss_dssp --CCHHHHHCGGGHHHHHTHHHHCTTGGGTCCCCHHHHHHCCCHHHHHHHHHHHHH--HSCCSEEEETTCTTSHHHHHHH
T ss_pred CCCChhhhccHHHHHHHHhhhhhHhhccCCceecccceeecCHHHHHHHHHHHhhh--ccCCCEEEECccccCHHHHHHH
Confidence 3444433 2344678999887655210 011 1332222 223333333321 0257899999999999999999
Q ss_pred HhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--CcccEEEeCCCChhH--HHHHHHHHHHhcccCcE
Q 004354 88 DAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGK 161 (759)
Q Consensus 88 ~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~ 161 (759)
+.| .+|+|+|+|+.+++.+++++.... .+++|+++|+.++. ++||+|+++...++. ....+.+++++|+|||.
T Consensus 98 ~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~ 176 (241)
T 3gdh_A 98 LTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGF 176 (241)
T ss_dssp HTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHH
T ss_pred HcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcce
Confidence 987 569999999999999998876554 47999999998876 799999997644332 34467789999999999
Q ss_pred EEEE
Q 004354 162 FVCL 165 (759)
Q Consensus 162 liii 165 (759)
+++.
T Consensus 177 ~i~~ 180 (241)
T 3gdh_A 177 EIFR 180 (241)
T ss_dssp HHHH
T ss_pred eHHH
Confidence 6544
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.9e-12 Score=125.16 Aligned_cols=96 Identities=22% Similarity=0.275 Sum_probs=82.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC---C----CcccEEEeCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM---Q----GGLDALMEPEL 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~---~----gtfD~Ii~~~~ 140 (759)
++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++ .++.+.+.|+.++ + ++||+|++...
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~ 125 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYDLICANFA 125 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEEEEEEESC
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-----cccccchhhHHhhcccccccCCCccEEEECch
Confidence 568999999999999999999877 599999999999988776 5678899988777 2 56999999765
Q ss_pred Ch-hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 141 GH-KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 141 ~~-~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.+ .....+++++.++|+|||++++.++..
T Consensus 126 l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 126 LLHQDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp CCSSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 44 237899999999999999999998643
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.5e-12 Score=127.46 Aligned_cols=114 Identities=21% Similarity=0.284 Sum_probs=92.7
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~ 129 (759)
+......+..++. ++.+|||+|||+|.++..+++. .+|+|+|+|+.+++.++++......++++.++|+.+++
T Consensus 20 ~~~~~~~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 92 (243)
T 3d2l_A 20 YPEWVAWVLEQVE-----PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE 92 (243)
T ss_dssp HHHHHHHHHHHSC-----TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC
T ss_pred HHHHHHHHHHHcC-----CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC
Confidence 3445555666664 4689999999999999999877 46999999999999999887655578999999998876
Q ss_pred --CcccEEEeCC-CCh-----hHHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 130 --GGLDALMEPE-LGH-----KLGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 130 --gtfD~Ii~~~-~~~-----~~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++||+|++.. ..+ .....+++++.++|+|||++++......
T Consensus 93 ~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 141 (243)
T 3d2l_A 93 LPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPY 141 (243)
T ss_dssp CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred CCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHH
Confidence 7899999864 222 3378899999999999999998766543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6e-12 Score=132.90 Aligned_cols=136 Identities=10% Similarity=0.082 Sum_probs=102.7
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEe
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVM 123 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~ 123 (759)
|+......+..+..++ .++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.|++++...+ ..++++++
T Consensus 108 f~~~~~~~~~~l~~~~-----~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~ 182 (278)
T 2frn_A 108 FSPANVKERVRMAKVA-----KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 182 (278)
T ss_dssp CCGGGHHHHHHHHHHC-----CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred EcCCcHHHHHHHHHhC-----CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEEC
Confidence 5555445555566665 3578999999999999999999887679999999999999998875433 34899999
Q ss_pred ecccCC--CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCch-----hhhhhhcccc-CCCceEEE
Q 004354 124 DMTSMQ--GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES-----HVLGLLFPKF-RFGWKMSV 188 (759)
Q Consensus 124 D~~~~~--gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~-----~~~~~l~~~~-~~~w~v~~ 188 (759)
|+.++. ++||+|+++.... ...++.++.++|+|||++++.++... .....+.... ..+|.+..
T Consensus 183 D~~~~~~~~~fD~Vi~~~p~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 183 DNRDFPGENIADRILMGYVVR--THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp CTTTCCCCSCEEEEEECCCSS--GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred CHHHhcccCCccEEEECCchh--HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 999886 7899999965422 36789999999999999999988742 2222222222 33777766
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.4e-12 Score=130.64 Aligned_cols=102 Identities=20% Similarity=0.311 Sum_probs=87.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~~~ 141 (759)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++..... .+++++++|+.+++ ++||+|++....
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 139 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESL 139 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechh
Confidence 6788999999999999999988633469999999999999988875433 36999999998876 789999997765
Q ss_pred hhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 142 HKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 142 ~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++. ...+++++.++|+|||++++.++.
T Consensus 140 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 140 HHMPDRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp TTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred hhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence 544 789999999999999999998864
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-11 Score=132.90 Aligned_cols=111 Identities=9% Similarity=0.087 Sum_probs=92.2
Q ss_pred HhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCCCcccEE
Q 004354 59 SLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQGGLDAL 135 (759)
Q Consensus 59 ~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~gtfD~I 135 (759)
..+......++.+|||+|||+|.++..+++. |. +|+|+|+|+.+++.++++....+ .++++.++|+.+++++||+|
T Consensus 81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v 159 (318)
T 2fk8_A 81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRI 159 (318)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEE
T ss_pred HHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEE
Confidence 3344334467889999999999999999987 77 59999999999999998875433 46999999998888899999
Q ss_pred EeCCCChh----HHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 136 MEPELGHK----LGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 136 i~~~~~~~----~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++....++ ....+++++.++|+|||++++.++..+
T Consensus 160 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 160 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 99764433 378999999999999999999887643
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.4e-12 Score=134.46 Aligned_cols=103 Identities=25% Similarity=0.301 Sum_probs=88.8
Q ss_pred CCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---CcccEEEeCC
Q 004354 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPE 139 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~ 139 (759)
..++.+|||+|||+|.++..+++. |. +|+|+|+|+.+++.++++....+ .+++++++|+.+++ ++||+|++..
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE 193 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence 367789999999999999999987 65 59999999999999998875543 46999999999876 7999999977
Q ss_pred CChhH-HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 140 LGHKL-GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 140 ~~~~~-~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
..++. ...+++++.++|||||++++.+...
T Consensus 194 ~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 194 STMYVDLHDLFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp CGGGSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred chhhCCHHHHHHHHHHHcCCCcEEEEEEccc
Confidence 54443 8999999999999999999988543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-12 Score=133.18 Aligned_cols=102 Identities=19% Similarity=0.220 Sum_probs=88.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~ 142 (759)
.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.++++......+++|+++|+.+++ ++||+|++....+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~ 100 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLL 100 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCGG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChhh
Confidence 567899999999999999998872 246999999999999999987665668999999999877 8899999987554
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+. ...+++++.++|+|||++++....
T Consensus 101 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 101 HMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 43 789999999999999999998764
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.32 E-value=7.7e-12 Score=130.11 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=88.1
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ- 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~- 129 (759)
..+...+..++. ++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++.. . .+.++|+.+++
T Consensus 42 ~~~~~~l~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~---~--~~~~~d~~~~~~ 110 (260)
T 2avn_A 42 RLIGSFLEEYLK-----NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV---K--NVVEAKAEDLPF 110 (260)
T ss_dssp HHHHHHHHHHCC-----SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC---S--CEEECCTTSCCS
T ss_pred HHHHHHHHHhcC-----CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC---C--CEEECcHHHCCC
Confidence 344455555542 567999999999999999998876 59999999999999988763 1 28999998876
Q ss_pred --CcccEEEeCCCChhH---HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 130 --GGLDALMEPELGHKL---GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 130 --gtfD~Ii~~~~~~~~---~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++||+|++.....+. ...+++++.++|+|||++++.+....
T Consensus 111 ~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 156 (260)
T 2avn_A 111 PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 156 (260)
T ss_dssp CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred CCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence 789999997633222 78999999999999999999887643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.5e-12 Score=121.61 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=88.7
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC-C-CcEEEEeeccc-
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-S-DMRWRVMDMTS- 127 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~-~-~i~f~~~D~~~- 127 (759)
.+...+...+.. .++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.++++..... + ++ +++.|+.+
T Consensus 12 ~~~~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~ 87 (178)
T 3hm2_A 12 HVRALAISALAP---KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRA 87 (178)
T ss_dssp HHHHHHHHHHCC---CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGG
T ss_pred HHHHHHHHHhcc---cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhh
Confidence 444555555554 567899999999999999998872 3469999999999999998875433 3 57 88888744
Q ss_pred CC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 128 MQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 128 ~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++ ++||+|++....++ ..+++++.++|+|||++++.+...+
T Consensus 88 ~~~~~~~~D~i~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~ 131 (178)
T 3hm2_A 88 FDDVPDNPDVIFIGGGLTA--PGVFAAAWKRLPVGGRLVANAVTVE 131 (178)
T ss_dssp GGGCCSCCSEEEECC-TTC--TTHHHHHHHTCCTTCEEEEEECSHH
T ss_pred hhccCCCCCEEEECCcccH--HHHHHHHHHhcCCCCEEEEEeeccc
Confidence 22 68999999876554 7899999999999999999887643
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-12 Score=133.55 Aligned_cols=143 Identities=17% Similarity=0.120 Sum_probs=93.6
Q ss_pred ccCCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCH
Q 004354 22 LGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101 (759)
Q Consensus 22 ~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~ 101 (759)
...|....||+.+|.... .....-..........+..++.. ...++.+|||||||+|.++..++..+..+|+|+|+|+
T Consensus 27 y~~~~~~~y~~~~y~~~~-~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~ 104 (289)
T 2g72_A 27 YQRFEPRAYLRNNYAPPR-GDLCNPNGVGPWKLRCLAQTFAT-GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLE 104 (289)
T ss_dssp GGGCCHHHHHHHHHSTTT-TCCSSTTSHHHHHHHHHHHHHHT-SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCH
T ss_pred HhccCHHHHHHHHhcCcc-cchhhhhHHHHHHHHHHHHHhCC-CCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCH
Confidence 334666678888886542 11000000011112334444432 1125679999999999965544443345799999999
Q ss_pred HHHHHHHHHhccCCC-------------------------------CcEEEEeeccc-CC--------CcccEEEeCCCC
Q 004354 102 VVISDMLRRNVRDRS-------------------------------DMRWRVMDMTS-MQ--------GGLDALMEPELG 141 (759)
Q Consensus 102 ~~I~~a~~r~~~~~~-------------------------------~i~f~~~D~~~-~~--------gtfD~Ii~~~~~ 141 (759)
.|++.+++++..... .++++++|+.+ ++ ++||+|++....
T Consensus 105 ~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l 184 (289)
T 2g72_A 105 VNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCL 184 (289)
T ss_dssp HHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCH
T ss_pred HHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhh
Confidence 999999886532110 14577779877 32 569999998866
Q ss_pred hh------HHHHHHHHHHHhcccCcEEEEEE
Q 004354 142 HK------LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 142 ~~------~~~~~l~ei~rvLkpGG~liiit 166 (759)
++ ....+++++.++|||||+|++..
T Consensus 185 ~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 185 EAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 65 38899999999999999999874
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-11 Score=124.09 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=94.5
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEE
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~ 122 (759)
.|...+..+...+...+......++.+|||+|||+|.++..+++. |. .+|+|+|+|+.+++.+++++... +++++++
T Consensus 50 ~~~p~~~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~ 128 (227)
T 1g8a_A 50 IWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPIL 128 (227)
T ss_dssp ECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEE
T ss_pred EeCCCchhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEE
Confidence 356655555555544454333467889999999999999999976 42 47999999999999998887544 7899999
Q ss_pred eecccC------CCcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 123 MDMTSM------QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 123 ~D~~~~------~gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+|+.+. .++||+|++.....+....++.++.++|+|||++++..
T Consensus 129 ~d~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 129 GDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCcchhhcccCCceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999873 16899999976544445677999999999999999873
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.2e-11 Score=119.57 Aligned_cols=98 Identities=12% Similarity=0.034 Sum_probs=82.7
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
++.+|||+|||+|.++..++.. +..+++++|+|+.+++.++++..... .++++.++|+.+.. ++||+|++....
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~~-- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA-- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEeccC--
Confidence 3679999999999999999886 23479999999999999988875433 45999999998876 789999987542
Q ss_pred HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 144 LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 144 ~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
....+++++.++|+|||++++...
T Consensus 143 ~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 143 SLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 367899999999999999998864
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-11 Score=130.85 Aligned_cols=147 Identities=18% Similarity=0.219 Sum_probs=110.0
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~ 129 (759)
+...+...... .++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|++++...+ .+++|.++|+.+++
T Consensus 191 la~~l~~~~~~---~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~ 267 (354)
T 3tma_A 191 LAQALLRLADA---RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLP 267 (354)
T ss_dssp HHHHHHHHTTC---CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGG
T ss_pred HHHHHHHHhCC---CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCc
Confidence 44445555543 567899999999999999999864 2459999999999999999875544 37999999999876
Q ss_pred ---CcccEEEeCCCCh----------hHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeCCCCC
Q 004354 130 ---GGLDALMEPELGH----------KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSS 196 (759)
Q Consensus 130 ---gtfD~Ii~~~~~~----------~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~~~~ 196 (759)
+.||+|+++.... .....+++++.++|+|||++++++..... ...+.. .+|.........
T Consensus 268 ~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~-~~~~~~---~g~~~~~~~~l~--- 340 (354)
T 3tma_A 268 RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPAL-LKRALP---PGFALRHARVVE--- 340 (354)
T ss_dssp GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHH-HHHHCC---TTEEEEEEEECC---
T ss_pred cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHH-HHHHhh---cCcEEEEEEEEE---
Confidence 6789999965211 11478999999999999999999876543 333333 477765544433
Q ss_pred CCCCceEEEEEEEe
Q 004354 197 SEPSLQTFMVVADK 210 (759)
Q Consensus 197 ~~~~~~~f~~v~~K 210 (759)
...+..++|+++|
T Consensus 341 -~g~l~~~i~vl~r 353 (354)
T 3tma_A 341 -QGGVYPRVFVLEK 353 (354)
T ss_dssp -BTTBCCEEEEEEE
T ss_pred -eCCEEEEEEEEEc
Confidence 3457788888876
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.8e-11 Score=122.64 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=91.6
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~ 123 (759)
|......+...+...+......++.+|||+|||+|..+..+++. | -..|+|+|+|+.+++.+.+.+.. ..++.++++
T Consensus 54 w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-r~nv~~i~~ 132 (232)
T 3id6_C 54 WNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-RPNIFPLLA 132 (232)
T ss_dssp CCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-CTTEEEEEC
T ss_pred hchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCeEEEEc
Confidence 54444456666666665445678999999999999999999875 3 23699999999998766554432 368999999
Q ss_pred ecccCC------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 124 DMTSMQ------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 124 D~~~~~------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
|++... +.||+|+++.........+...+.++|||||+|++..
T Consensus 133 Da~~~~~~~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 133 DARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp CTTCGGGTTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhhccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEEE
Confidence 997642 6899999986655555666677788999999999874
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=8.3e-12 Score=127.06 Aligned_cols=133 Identities=12% Similarity=0.041 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHh--hcCCCCcccc--ccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCC
Q 004354 25 FTSKENWDKFFT--IRGIGDSFEW--YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFS 100 (759)
Q Consensus 25 f~~~~yWd~~y~--~~~~~~~~eW--~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS 100 (759)
|....||+..|. ... ..+.. ....+.+...+...+.. .++.+|||+|||+|.++..+++.+ .+|+|+|+|
T Consensus 28 f~~~~~~~~~Y~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~ 101 (231)
T 1vbf_A 28 FLPENLKDYAYAHTHEA--LPILPGINTTALNLGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEIN 101 (231)
T ss_dssp HSCGGGGGGSSSSTTCC--EEEETTEEECCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESC
T ss_pred cCCcchhhhccccCCCc--eeeCCCCccCCHHHHHHHHHhcCC---CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCC
Confidence 445566766665 321 11110 11123445555566544 577899999999999999999987 579999999
Q ss_pred HHHHHHHHHHhccCCCCcEEEEeecccC-C--CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 101 KVVISDMLRRNVRDRSDMRWRVMDMTSM-Q--GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 101 ~~~I~~a~~r~~~~~~~i~f~~~D~~~~-~--gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+.+++.++++..... +++++++|+.+. + ++||+|++....++. ..++.++|+|||++++....
T Consensus 102 ~~~~~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~----~~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 102 EKMYNYASKLLSYYN-NIKLILGDGTLGYEEEKPYDRVVVWATAPTL----LCKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp HHHHHHHHHHHTTCS-SEEEEESCGGGCCGGGCCEEEEEESSBBSSC----CHHHHHTEEEEEEEEEEECS
T ss_pred HHHHHHHHHHHhhcC-CeEEEECCcccccccCCCccEEEECCcHHHH----HHHHHHHcCCCcEEEEEEcC
Confidence 999999998875544 899999999873 3 789999998755443 34789999999999998754
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.28 E-value=9.2e-12 Score=124.85 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=84.3
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEEeecccCC-----Cc-ccEEEeC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQ-----GG-LDALMEP 138 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~---~~i~f~~~D~~~~~-----gt-fD~Ii~~ 138 (759)
++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.+++++.... .+++++++|+.+.. ++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 467999999999999999888887789999999999999999875544 47999999987643 57 9999997
Q ss_pred CCCh-hHHHHHHHHH--HHhcccCcEEEEEEcCc
Q 004354 139 ELGH-KLGNQYLSEV--KRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 139 ~~~~-~~~~~~l~ei--~rvLkpGG~liiit~~~ 169 (759)
...+ .....+++.+ .++|+|||.+++.+...
T Consensus 133 ~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFHFNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 6522 3367788888 67899999999887643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=127.51 Aligned_cols=103 Identities=16% Similarity=0.088 Sum_probs=81.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhc-------cCCCCcEEEEeeccc-C----C-Ccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV-------RDRSDMRWRVMDMTS-M----Q-GGL 132 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~-------~~~~~i~f~~~D~~~-~----~-gtf 132 (759)
.++.+|||||||+|.++..|++.. ..+|+|+|+|+.+++.|++++. ....++.++++|+.+ + + ++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 356789999999999999998873 3479999999999999887653 234689999999986 3 2 899
Q ss_pred cEEEeCCCChhH----------HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 133 DALMEPELGHKL----------GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 133 D~Ii~~~~~~~~----------~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
|.|++....++. ...+++++.++|+|||.+++.+...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~ 171 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL 171 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH
Confidence 999886533332 1579999999999999999988654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=120.38 Aligned_cols=117 Identities=14% Similarity=0.132 Sum_probs=90.9
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC-
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM- 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~- 128 (759)
.+...+...+.. ..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++++..... .+++++++|+.+.
T Consensus 17 ~~~~~~~~~l~~--~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 94 (177)
T 2esr_A 17 KVRGAIFNMIGP--YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI 94 (177)
T ss_dssp -CHHHHHHHHCS--CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH
T ss_pred HHHHHHHHHHHh--hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH
Confidence 344455555541 13577999999999999999998877789999999999999998875543 3689999998773
Q ss_pred C---CcccEEEeCCCCh-hHHHHHHHHHH--HhcccCcEEEEEEcCch
Q 004354 129 Q---GGLDALMEPELGH-KLGNQYLSEVK--RLLKSGGKFVCLTLAES 170 (759)
Q Consensus 129 ~---gtfD~Ii~~~~~~-~~~~~~l~ei~--rvLkpGG~liiit~~~~ 170 (759)
+ +.||+|+++...+ ......++.+. ++|+|||++++.+....
T Consensus 95 ~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 95 DCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp HHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred HhhcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 2 6799999986543 33667777776 99999999999876543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.5e-12 Score=132.15 Aligned_cols=165 Identities=15% Similarity=0.096 Sum_probs=103.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
..+.+||+||+|+|.++..+....+..+|++||+||.+++.|++.+ |+ ++++++.+|+.++ .
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl---~~v~~v~gDa~~l----~-------- 185 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV---DGVNVITGDETVI----D-------- 185 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC---CSEEEEESCGGGG----G--------
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC---CCeEEEECchhhC----C--------
Confidence 5678999999998866554445556789999999999999999986 65 6899999999874 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhH
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 684 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~ 684 (759)
+..||+|+++....+ -..+++.+.+.|+|||.|+++........
T Consensus 186 -----------------------d~~FDvV~~~a~~~d-------------~~~~l~el~r~LkPGG~Lvv~~~~~~r~~ 229 (298)
T 3fpf_A 186 -----------------------GLEFDVLMVAALAEP-------------KRRVFRNIHRYVDTETRIIYRTYTGMRAI 229 (298)
T ss_dssp -----------------------GCCCSEEEECTTCSC-------------HHHHHHHHHHHCCTTCEEEEEECCGGGGG
T ss_pred -----------------------CCCcCEEEECCCccC-------------HHHHHHHHHHHcCCCcEEEEEcCcchhhh
Confidence 157999999543211 26899999999999999999875432221
Q ss_pred -HHHHHHHHHHhcCceEEEeecC-CccEEEEEecCCCCCCCCcHHHHHHHHhhhcCCCchh
Q 004354 685 -KDMVISRMKMVFNHLFCLQLEE-DVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLE 743 (759)
Q Consensus 685 -~~~v~~~l~~vF~~v~~~~~~~-~~N~Vl~a~~~~~~~~~~~l~~~a~~l~~~~~~~~~~ 743 (759)
...+.....+.|..+..+...+ -.|.|+|+.+....--.+.+-+..++=+.+++|+...
T Consensus 230 l~~~v~~~~~~gf~~~~~~~p~~~v~N~vv~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (298)
T 3fpf_A 230 LYAPVSDDDITGFRRAGVVLPSGKVNNTSVLVFKCPDKGELNSKLEGKPIPNPLLGLDSTR 290 (298)
T ss_dssp SSCCCCTGGGTTEEEEEEECCCTTCCCEEEEEEECC-------------------------
T ss_pred ccccCChhhhhhhhheeEECCCCCcCcEEEEEEccCCchHHHHHHhcccCCcceecccccc
Confidence 1111233445777766655443 4799999988876544455777777777777776443
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=131.80 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=81.7
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC-------------------------------
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR------------------------------- 115 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~------------------------------- 115 (759)
++.+|||||||+|.++..|+.. +..+|+|+|+|+.+++.|+++.....
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 5689999999999999999987 44579999999999999988754321
Q ss_pred ----------------------------CCcEEEEeecccCC--------CcccEEEeCCCChh--------HHHHHHHH
Q 004354 116 ----------------------------SDMRWRVMDMTSMQ--------GGLDALMEPELGHK--------LGNQYLSE 151 (759)
Q Consensus 116 ----------------------------~~i~f~~~D~~~~~--------gtfD~Ii~~~~~~~--------~~~~~l~e 151 (759)
.+++|.++|+.... ++||+|+|....++ ....++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 47999999997532 78999999886532 37889999
Q ss_pred HHHhcccCcEEEEEE
Q 004354 152 VKRLLKSGGKFVCLT 166 (759)
Q Consensus 152 i~rvLkpGG~liiit 166 (759)
++++|+|||++++..
T Consensus 206 ~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 206 IYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHEEEEEEEEEEC
T ss_pred HHHHhCCCcEEEEec
Confidence 999999999999864
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=9e-12 Score=124.93 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=88.4
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~ 129 (759)
+.....+...+.. .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.... ..++++.++|+.+..
T Consensus 63 ~~~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 138 (210)
T 3lbf_A 63 PYMVARMTELLEL---TPQSRVLEIGTGSGYQTAILAHLVQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW 138 (210)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 3455556666554 6788999999999999999999854 6999999999999999887543 357999999998765
Q ss_pred ---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 ---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++||+|++....++.. .++.++|+|||++++....
T Consensus 139 ~~~~~~D~i~~~~~~~~~~----~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 139 QARAPFDAIIVTAAPPEIP----TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GGGCCEEEEEESSBCSSCC----THHHHTEEEEEEEEEEECS
T ss_pred ccCCCccEEEEccchhhhh----HHHHHhcccCcEEEEEEcC
Confidence 7899999986554432 3688999999999988754
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=123.54 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=78.6
Q ss_pred CCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChhH-
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHKL- 144 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~- 144 (759)
+.+|||+|||+|.++..++.. +|+|+|+.+++.++++ +++++++|+.+++ ++||+|++....++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR------GVFVLKGTAENLPLKDESFDFALMVTTICFVD 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc------CCEEEEcccccCCCCCCCeeEEEEcchHhhcc
Confidence 679999999999999988654 9999999999988765 5899999998876 689999998765543
Q ss_pred -HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 145 -GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 145 -~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
...+++++.++|+|||.+++.+....
T Consensus 117 ~~~~~l~~~~~~L~pgG~l~i~~~~~~ 143 (219)
T 1vlm_A 117 DPERALKEAYRILKKGGYLIVGIVDRE 143 (219)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred CHHHHHHHHHHHcCCCcEEEEEEeCCc
Confidence 78999999999999999999887654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=122.34 Aligned_cols=101 Identities=18% Similarity=0.198 Sum_probs=83.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC-----CcccEEEeCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-----GGLDALMEPEL 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~-----gtfD~Ii~~~~ 140 (759)
++.+|||+|||+|.++..++... ..+++|+|+|+.+++.|+++.... ..++.++++|+.+++ ++||+|+++..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 57799999999999999999874 247999999999999998887543 368999999998753 78999999754
Q ss_pred Chh----------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 141 GHK----------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 141 ~~~----------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.++ ....+++++.++|+|||.+++.+-.
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 158 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 322 1368999999999999999998754
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.8e-11 Score=123.13 Aligned_cols=152 Identities=14% Similarity=0.078 Sum_probs=103.8
Q ss_pred HHHHhhcCCCCC-CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---
Q 004354 56 PLISLIGAPTSS-PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--- 129 (759)
Q Consensus 56 ~l~~~l~~~~~~-~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--- 129 (759)
++..++.. . ++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.++++..... .+++++++|+.+..
T Consensus 39 ll~~~~~~---~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~ 115 (259)
T 3lpm_A 39 LLAKFSYL---PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI 115 (259)
T ss_dssp HHHHHCCC---CSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS
T ss_pred HHHHHhcC---CCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh
Confidence 34455543 5 678999999999999999998866589999999999999998875433 35999999998764
Q ss_pred --CcccEEEeCCCCh----------------------hHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcccc-CCCc
Q 004354 130 --GGLDALMEPELGH----------------------KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGW 184 (759)
Q Consensus 130 --gtfD~Ii~~~~~~----------------------~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~-~~~w 184 (759)
++||+|+++.... .....+++.+.++|+|||+++++.... ....+.... ..+|
T Consensus 116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~l~~~~~ 193 (259)
T 3lpm_A 116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE--RLLDIIDIMRKYRL 193 (259)
T ss_dssp CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT--THHHHHHHHHHTTE
T ss_pred ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH--HHHHHHHHHHHCCC
Confidence 7899999964211 124679999999999999999976322 122222222 2255
Q ss_pred eEEEEEeCCCCCCCCCceEEEEEEEeCCC
Q 004354 185 KMSVHAIPQKSSSEPSLQTFMVVADKENS 213 (759)
Q Consensus 185 ~v~~~~~~~~~~~~~~~~~f~~v~~K~~~ 213 (759)
........... .......+++.+.|..+
T Consensus 194 ~~~~~~~v~~~-~~~~~~~~l~~~~k~~~ 221 (259)
T 3lpm_A 194 EPKRIQFVHPR-SDREANTVLVEGIKDGK 221 (259)
T ss_dssp EEEEEEEEESS-TTSCCSEEEEEEEETCC
T ss_pred ceEEEEEeecC-CCCCcEEEEEEEEeCCC
Confidence 54432221111 12234456666677543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=130.91 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=89.6
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc--------CCCCcEEEEeecccCC---------C
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR--------DRSDMRWRVMDMTSMQ---------G 130 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~--------~~~~i~f~~~D~~~~~---------g 130 (759)
++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++... ...+++++++|+.+.+ +
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 5679999999999999999887666799999999999999887643 2346899999998752 4
Q ss_pred cccEEEeCCCChhH------HHHHHHHHHHhcccCcEEEEEEcCchhhhhhh
Q 004354 131 GLDALMEPELGHKL------GNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL 176 (759)
Q Consensus 131 tfD~Ii~~~~~~~~------~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l 176 (759)
+||+|++....++. ...+++++.++|+|||.+++.+.........+
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~ 165 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRL 165 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHH
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHH
Confidence 89999998765442 57999999999999999999998776544443
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=125.08 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=90.2
Q ss_pred CCHHHHHHHHhhcCCCCccccccc--h---hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCC
Q 004354 26 TSKENWDKFFTIRGIGDSFEWYAE--W---PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFS 100 (759)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~eW~~~--~---~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS 100 (759)
...+||+...+..+ .....|... . ..+...+...+. .++.+|||+|||+|.++..+++.|. +|+|+|+|
T Consensus 6 ~~~~~y~~~~~~~g-~y~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s 79 (226)
T 3m33_A 6 HSRESYDRLARELG-GYRHPWARVLSGPDPELTFDLWLSRLL----TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFS 79 (226)
T ss_dssp --CHHHHHHHHHHT-TTSCCSCCEESSSCTTHHHHHHHHHHC----CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESC
T ss_pred hhHHHHHHHHHHhc-hhhhhhccccCCCCHHHHHHHHHHhcC----CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECC
Confidence 35678888776553 222234321 1 122222222211 3678999999999999999999876 69999999
Q ss_pred HHHHHHHHHHhccCCCCcEEEEeecc-cCC----CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEE
Q 004354 101 KVVISDMLRRNVRDRSDMRWRVMDMT-SMQ----GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 101 ~~~I~~a~~r~~~~~~~i~f~~~D~~-~~~----gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~li 163 (759)
+.+++.++++ .++++++++|+. .++ ++||+|++... ...+++++.++|||||+++
T Consensus 80 ~~~~~~a~~~----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~----~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 80 PELLKLARAN----APHADVYEWNGKGELPAGLGAPFGLIVSRRG----PTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp HHHHHHHHHH----CTTSEEEECCSCSSCCTTCCCCEEEEEEESC----CSGGGGGHHHHEEEEEEEE
T ss_pred HHHHHHHHHh----CCCceEEEcchhhccCCcCCCCEEEEEeCCC----HHHHHHHHHHHcCCCcEEE
Confidence 9999999887 467999999994 443 68999999743 4578899999999999999
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=121.53 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=90.3
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~ 128 (759)
..+...+...+.. ..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++++..... ++++++++|+.+.
T Consensus 29 ~~~~~~~~~~l~~--~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 106 (187)
T 2fhp_A 29 DKVKESIFNMIGP--YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA 106 (187)
T ss_dssp HHHHHHHHHHHCS--CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHHHHh--hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHH
Confidence 3455555566532 13577999999999999999988876789999999999999988875433 4699999998773
Q ss_pred -------CCcccEEEeCCCCh-hHHHHHHHHH--HHhcccCcEEEEEEcCc
Q 004354 129 -------QGGLDALMEPELGH-KLGNQYLSEV--KRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 129 -------~gtfD~Ii~~~~~~-~~~~~~l~ei--~rvLkpGG~liiit~~~ 169 (759)
.++||+|+++...+ ......+..+ .++|+|||.+++.+...
T Consensus 107 ~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 107 LEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 26899999976532 2256677777 89999999999887554
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=125.54 Aligned_cols=103 Identities=17% Similarity=0.087 Sum_probs=83.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccC-----C-CcccEEEeCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM-----Q-GGLDALMEPE 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~-----~-gtfD~Ii~~~ 139 (759)
++.+|||||||+|.++..+++... .+|+|||+|+.+++.+++++... ..++.++++|+.++ + ++||.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 567999999999999999998743 36999999999999999887544 35799999998774 3 8999999863
Q ss_pred CChhH----------HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 140 LGHKL----------GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 140 ~~~~~----------~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
..++. ...+++++.++|||||++++.+-...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~ 154 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEP 154 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence 22211 13699999999999999999986544
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.9e-12 Score=135.87 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=86.1
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~- 129 (759)
....+.+.+.. .++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|+++....+ .+++++++|+.+++
T Consensus 52 ~~~~i~~~~~~---~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 127 (340)
T 2fyt_A 52 YRDFIYQNPHI---FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL 127 (340)
T ss_dssp HHHHHHHCGGG---TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC
T ss_pred HHHHHHhhhhh---cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC
Confidence 33444444433 46789999999999999999998877899999997 9999988775443 57999999998876
Q ss_pred --CcccEEEeCCC---C--hhHHHHHHHHHHHhcccCcEEE
Q 004354 130 --GGLDALMEPEL---G--HKLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 130 --gtfD~Ii~~~~---~--~~~~~~~l~ei~rvLkpGG~li 163 (759)
++||+|++... . ......++.++.++|||||+++
T Consensus 128 ~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 128 PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 78999998652 1 1237789999999999999987
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=123.47 Aligned_cols=102 Identities=12% Similarity=0.164 Sum_probs=83.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC-----CcccEEEeCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-----GGLDALMEPEL 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~-----gtfD~Ii~~~~ 140 (759)
++.+|||||||+|.++..|++.. ..+|+|+|+|+.+++.|+++.... ..++.++++|+.+++ ++||.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 56799999999999999999873 246999999999999999887543 357999999998753 78999987542
Q ss_pred ChhH----------HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 141 GHKL----------GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 141 ~~~~----------~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.++. ...+++++.++|+|||.+++.+-..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~ 156 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR 156 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 2211 3689999999999999999988543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=128.20 Aligned_cols=96 Identities=23% Similarity=0.307 Sum_probs=81.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.++++. +++.+.++|+.+++ ++||+|++....
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-- 158 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRLPFSDTSMDAIIRIYAP-- 158 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSCSBCTTCEEEEEEESCC--
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchhhCCCCCCceeEEEEeCCh--
Confidence 67899999999999999999871 236999999999999988764 57899999998876 789999986543
Q ss_pred HHHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 144 LGNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 144 ~~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
.+++++.++|+|||++++++....+.
T Consensus 159 ---~~l~~~~~~L~pgG~l~~~~~~~~~~ 184 (269)
T 1p91_A 159 ---CKAEELARVVKPGGWVITATPGPRHL 184 (269)
T ss_dssp ---CCHHHHHHHEEEEEEEEEEEECTTTT
T ss_pred ---hhHHHHHHhcCCCcEEEEEEcCHHHH
Confidence 35899999999999999999876553
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.1e-11 Score=114.39 Aligned_cols=110 Identities=11% Similarity=0.123 Sum_probs=82.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChh--
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHK-- 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~-- 143 (759)
++.+|||+|||+|.++..+++.+ +|+|+|+|+.+++. ..+++++++|+.+.. ++||+|+++...++
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~--------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~ 92 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES--------HRGGNLVRADLLCSINQESVDVVVFNPPYVPDT 92 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT--------CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTC
T ss_pred CCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc--------ccCCeEEECChhhhcccCCCCEEEECCCCccCC
Confidence 56799999999999999999987 79999999999875 357899999998743 89999999764432
Q ss_pred ---------HHHHHHHHHHHhcccCcEEEEEEcCch--hhhhhhccccCCCceEEEEE
Q 004354 144 ---------LGNQYLSEVKRLLKSGGKFVCLTLAES--HVLGLLFPKFRFGWKMSVHA 190 (759)
Q Consensus 144 ---------~~~~~l~ei~rvLkpGG~liiit~~~~--~~~~~l~~~~~~~w~v~~~~ 190 (759)
....++.++.+.| |||+++++..... .....++.. .+|......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~--~gf~~~~~~ 147 (170)
T 3q87_B 93 DDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEE--RGYGTRILK 147 (170)
T ss_dssp CCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHH--TTCEEEEEE
T ss_pred ccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHH--CCCcEEEEE
Confidence 2356788888888 9999999875432 223333332 367655433
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-10 Score=118.82 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=89.3
Q ss_pred HHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC-
Q 004354 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ- 129 (759)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~- 129 (759)
..+...+.. .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.+++++... ..++++.++|+.+.+
T Consensus 86 ~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~ 162 (258)
T 2pwy_A 86 SAMVTLLDL---APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAEL 162 (258)
T ss_dssp HHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCC
T ss_pred HHHHHHcCC---CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCC
Confidence 344455543 57889999999999999999987 4 347999999999999998886443 367999999998873
Q ss_pred --CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 130 --GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 130 --gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+.||+|+++... ...+++++.++|+|||++++.+...+
T Consensus 163 ~~~~~D~v~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~ 202 (258)
T 2pwy_A 163 EEAAYDGVALDLME---PWKVLEKAALALKPDRFLVAYLPNIT 202 (258)
T ss_dssp CTTCEEEEEEESSC---GGGGHHHHHHHEEEEEEEEEEESCHH
T ss_pred CCCCcCEEEECCcC---HHHHHHHHHHhCCCCCEEEEEeCCHH
Confidence 789999995432 34789999999999999999987653
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.6e-11 Score=117.49 Aligned_cols=140 Identities=14% Similarity=0.181 Sum_probs=99.7
Q ss_pred chhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecc
Q 004354 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (759)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~ 126 (759)
.+..+...+..++ .+..+|||+|||+|.++..++.. +. +|+++|+|+.|++.+++++...+...++...|..
T Consensus 35 ~ld~fY~~~~~~l-----~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~ 108 (200)
T 3fzg_A 35 TLNDFYTYVFGNI-----KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKE 108 (200)
T ss_dssp GHHHHHHHHHHHS-----CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCH
T ss_pred hHHHHHHHHHhhc-----CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccc
Confidence 3344555555566 35789999999999999999766 34 7999999999999999998766655455557764
Q ss_pred cCC--CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEE---cCch-----hhhhhhcccc--CCCceEEEEEeC
Q 004354 127 SMQ--GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLT---LAES-----HVLGLLFPKF--RFGWKMSVHAIP 192 (759)
Q Consensus 127 ~~~--gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit---~~~~-----~~~~~l~~~~--~~~w~v~~~~~~ 192 (759)
... ++||+|+.....|.. .+..+..+.+.|+|||.||... .+.. ......++.. ...|.++-.+++
T Consensus 109 ~~~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~ 188 (200)
T 3fzg_A 109 SDVYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIG 188 (200)
T ss_dssp HHHTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEET
T ss_pred ccCCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeC
Confidence 433 889999998876655 4456679999999999998776 2221 1111122221 337999998888
Q ss_pred CC
Q 004354 193 QK 194 (759)
Q Consensus 193 ~~ 194 (759)
++
T Consensus 189 nE 190 (200)
T 3fzg_A 189 NE 190 (200)
T ss_dssp TE
T ss_pred ce
Confidence 74
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-10 Score=119.67 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=102.8
Q ss_pred HHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhcc---CCC--CcEEEEeecccC--
Q 004354 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVR---DRS--DMRWRVMDMTSM-- 128 (759)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~---~~~--~i~f~~~D~~~~-- 128 (759)
+..++.. .++.+|||+|||+|.++..++.... .+|+|+|+++.+++.++++... ... +++++++|+.+.
T Consensus 28 L~~~~~~---~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~ 104 (260)
T 2ozv_A 28 LASLVAD---DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAK 104 (260)
T ss_dssp HHHTCCC---CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHH
T ss_pred HHHHhcc---cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhh
Confidence 4445443 4677999999999999999998852 4699999999999999988754 332 489999999886
Q ss_pred --------CCcccEEEeCCCChh--------------------HHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhcccc
Q 004354 129 --------QGGLDALMEPELGHK--------------------LGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 180 (759)
Q Consensus 129 --------~gtfD~Ii~~~~~~~--------------------~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~ 180 (759)
.++||+|+++..... ....+++.+.++|+|||+++++.-.. ....++...
T Consensus 105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~l 182 (260)
T 2ozv_A 105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ--SVAEIIAAC 182 (260)
T ss_dssp HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG--GHHHHHHHH
T ss_pred hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH--HHHHHHHHH
Confidence 278999999742211 16788999999999999999876432 222233322
Q ss_pred CCCce-EEEEEeCCCCCCCCCceEEEEEEEeCCCc
Q 004354 181 RFGWK-MSVHAIPQKSSSEPSLQTFMVVADKENSS 214 (759)
Q Consensus 181 ~~~w~-v~~~~~~~~~~~~~~~~~f~~v~~K~~~~ 214 (759)
...|. +++..+... .......+++.++|..+.
T Consensus 183 ~~~~~~~~i~~v~~~--~~~~~~~~lv~~~k~~~~ 215 (260)
T 2ozv_A 183 GSRFGGLEITLIHPR--PGEDAVRMLVTAIKGSRA 215 (260)
T ss_dssp TTTEEEEEEEEEESS--TTSCCCEEEEEEEETCCC
T ss_pred HhcCCceEEEEEcCC--CCCCceEEEEEEEeCCCC
Confidence 22233 333333221 123445677777776543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=119.28 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=82.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------CcccEEEeCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------GGLDALMEPEL 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------gtfD~Ii~~~~ 140 (759)
++.+|||+|||+|.++..++..+.. |+|+|+|+.+++.++++......+++++++|+.+.. ++||+|+++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 5679999999999999999998776 999999999999999887543337999999988742 27999999764
Q ss_pred ChhHHHHHHHHHH--HhcccCcEEEEEEcCch
Q 004354 141 GHKLGNQYLSEVK--RLLKSGGKFVCLTLAES 170 (759)
Q Consensus 141 ~~~~~~~~l~ei~--rvLkpGG~liiit~~~~ 170 (759)
.+.....+++.+. ++|+|||.+++.+....
T Consensus 120 ~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 120 YAMDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp TTSCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CchhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 3223445566666 99999999998876544
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.5e-11 Score=131.26 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=84.1
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhc-------c---CCCCcEEEEeecccCC-----C
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-------R---DRSDMRWRVMDMTSMQ-----G 130 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~-------~---~~~~i~f~~~D~~~~~-----g 130 (759)
.++.+|||||||+|.++..++.. |...++|||+|+.+++.|+++.. . ...+++|+++|+.+++ .
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~ 251 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 251 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccC
Confidence 68899999999999999999864 66679999999999998876431 1 1257999999999877 4
Q ss_pred cccEEEeCCCCh-hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 131 GLDALMEPELGH-KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 131 tfD~Ii~~~~~~-~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.+|+|+++.... ......|.++.|+|||||++++.....
T Consensus 252 ~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~ 291 (438)
T 3uwp_A 252 NTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFA 291 (438)
T ss_dssp TCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred CccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeeccc
Confidence 799999976433 347788899999999999999886543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-11 Score=121.42 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=82.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccC-C---CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM-Q---GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~-~---gtfD~Ii~~~~~~ 142 (759)
++.+|||+|||+|.++..++..|..+|+++|+|+.+++.++++..... .+++++++|+.+. + ++||+|+++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 467999999999999999888887789999999999999998875543 5799999998763 3 6899999976522
Q ss_pred -hHHHHHHHHHHH--hcccCcEEEEEEcC
Q 004354 143 -KLGNQYLSEVKR--LLKSGGKFVCLTLA 168 (759)
Q Consensus 143 -~~~~~~l~ei~r--vLkpGG~liiit~~ 168 (759)
.....+++.+.+ +|+|||++++.+..
T Consensus 134 ~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 134 RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 236677888865 59999999987754
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=8.8e-11 Score=122.23 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=85.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccc-CC-CcccEEEeCCCChhH
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-MQ-GGLDALMEPELGHKL 144 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~-~~-gtfD~Ii~~~~~~~~ 144 (759)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++.......+++.++|+.+ ++ ++||+|+++.. ...
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~-~~~ 196 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLY-AEL 196 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECC-HHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCc-HHH
Confidence 4678999999999999999999888 79999999999999998875544348999999876 33 78999999653 334
Q ss_pred HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 145 GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 145 ~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
...++.++.++|+|||++++..+..
T Consensus 197 ~~~~l~~~~~~LkpgG~lils~~~~ 221 (254)
T 2nxc_A 197 HAALAPRYREALVPGGRALLTGILK 221 (254)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred HHHHHHHHHHHcCCCCEEEEEeecc
Confidence 6789999999999999999976543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-10 Score=134.19 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=109.0
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHhcc-------CCCCcEEEEeecc
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVR-------DRSDMRWRVMDMT 126 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~--~~VtgIDiS~~~I~~a~~r~~~-------~~~~i~f~~~D~~ 126 (759)
.+..++.. .++.+|||||||+|.++..|++.+. .+|+|+|+|+.+++.|++++.. ..++++|+++|+.
T Consensus 712 ~LLelL~~---~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~ 788 (950)
T 3htx_A 712 YALKHIRE---SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSIL 788 (950)
T ss_dssp HHHHHHHH---SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTT
T ss_pred HHHHHhcc---cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchH
Confidence 34444443 3678999999999999999998862 4799999999999999886531 2357999999999
Q ss_pred cCC---CcccEEEeCCCChhH----HHHHHHHHHHhcccCcEEEEEEcCchh--hhhhh----------------cc---
Q 004354 127 SMQ---GGLDALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLTLAESH--VLGLL----------------FP--- 178 (759)
Q Consensus 127 ~~~---gtfD~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~liiit~~~~~--~~~~l----------------~~--- 178 (759)
+++ ++||+|++....++. ...+++++.++|+|| .+++.+...++ ....+ +.
T Consensus 789 dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~D 867 (950)
T 3htx_A 789 EFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHD 867 (950)
T ss_dssp SCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSS
T ss_pred hCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccC
Confidence 887 899999998765543 456899999999999 77766643221 00000 00
Q ss_pred -----------------ccCCCceEEEEEeCCCCCCCCCceEEEEEEEe
Q 004354 179 -----------------KFRFGWKMSVHAIPQKSSSEPSLQTFMVVADK 210 (759)
Q Consensus 179 -----------------~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K 210 (759)
....+|.+.+..++.......+.+.-+-|++|
T Consensus 868 HrFEWTReEFr~Wae~LAer~GYsVefvGVGDg~ep~vG~~TQiAVFtR 916 (950)
T 3htx_A 868 HKFEWTREQFNQWASKLGKRHNYSVEFSGVGGSGEVEPGFASQIAIFRR 916 (950)
T ss_dssp CSCCBCHHHHHHHHHHHHHHTTEEEEEEEESSCSSSTTCCSEEEEEEEE
T ss_pred cceeecHHHHHHHHHHHHHhcCcEEEEEccCCCCCCCCCCccEEEEEEE
Confidence 00226778888887754344667777777887
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.7e-11 Score=123.63 Aligned_cols=143 Identities=15% Similarity=0.044 Sum_probs=98.2
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC------CcccEEEeCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ------GGLDALMEPE 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~------gtfD~Ii~~~ 139 (759)
++.+|||+|||+|.++..++.. ...+|+|+|+|+.+++.++++.... ..+++++++|+.+++ ++||+|++..
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 5679999999999999999864 2346999999999999998876543 346999999987653 6899999976
Q ss_pred CChhHHHHHHHHHHHhcccCcEEEEEEcCc-hhhhhhhcccc-CCCceEEE-EEeCCCCCCCCCceEEEEEEEeCCCcc
Q 004354 140 LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE-SHVLGLLFPKF-RFGWKMSV-HAIPQKSSSEPSLQTFMVVADKENSSV 215 (759)
Q Consensus 140 ~~~~~~~~~l~ei~rvLkpGG~liiit~~~-~~~~~~l~~~~-~~~w~v~~-~~~~~~~~~~~~~~~f~~v~~K~~~~~ 215 (759)
.. ....+++++.++|+|||++++..-.. ......+.... ..+|.+.. ..+... ...-..++++++|....|
T Consensus 150 ~~--~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~---~~~~~~~l~~~~k~~~~~ 223 (240)
T 1xdz_A 150 VA--RLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLP---IEESDRNIMVIRKIKNTP 223 (240)
T ss_dssp CS--CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECT---TTCCEEEEEEEEECSCCC
T ss_pred cC--CHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecC---CCCCceEEEEEEecCCCC
Confidence 42 36899999999999999998875321 12122222221 23565432 223221 122345666667765544
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6e-11 Score=130.85 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=88.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK- 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~- 143 (759)
++.+|||+|||+|.++..+++.|. +|+++|+|+.+++.+++++.....+++++++|+.+.. ++||+|+++...++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~ 311 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVG 311 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTT
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhc
Confidence 567999999999999999999876 6999999999999999988766667999999998876 69999999764433
Q ss_pred ------HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 144 ------LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 144 ------~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
....+++++.++|+|||+++++....
T Consensus 312 ~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 312 GAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp CSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred ccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 37899999999999999999987544
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-11 Score=132.46 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=85.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccC---------CCCcEEEEeecccC------C
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD---------RSDMRWRVMDMTSM------Q 129 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~---------~~~i~f~~~D~~~~------~ 129 (759)
.++.+|||+|||+|.++..|++. + ..+|+|+|+|+.+++.+++++... .++++|+++|+.++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 46789999999999999999876 2 236999999999999998876421 26899999999876 4
Q ss_pred ---CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 ---GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 ---gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++||+|++....++. ...+++++.++|||||++++.++.
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 205 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVY 205 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEec
Confidence 799999998765543 789999999999999999998753
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.1e-11 Score=123.24 Aligned_cols=144 Identities=16% Similarity=0.079 Sum_probs=101.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC------CcccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ------GGLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~------gtfD~Ii~~ 138 (759)
.++.+|||||||+|..+..|+.. +..+|+++|+|+.+++.++++.... ..+++++++|+.++. ++||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 45789999999999999999876 3346999999999999999887543 346999999998764 689999997
Q ss_pred CCChhHHHHHHHHHHHhcccCcEEEEEEcCc-hhhhhhhcccc-CCCceEE-EEEeCCCCCCCCCceEEEEEEEeCCCcc
Q 004354 139 ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE-SHVLGLLFPKF-RFGWKMS-VHAIPQKSSSEPSLQTFMVVADKENSSV 215 (759)
Q Consensus 139 ~~~~~~~~~~l~ei~rvLkpGG~liiit~~~-~~~~~~l~~~~-~~~w~v~-~~~~~~~~~~~~~~~~f~~v~~K~~~~~ 215 (759)
... ....+++.+.++|+|||++++..-.. ......+.... ..||.+. +..+... ...-..++++++|.+..+
T Consensus 159 a~~--~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p---~~~~~R~l~~~~k~~~t~ 233 (249)
T 3g89_A 159 AVA--PLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLP---LSGEARHLVVLEKTAPTP 233 (249)
T ss_dssp SSC--CHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECT---TTCCEEEEEEEEECSCCC
T ss_pred CcC--CHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCC---CCCCcEEEEEEEeCCCCC
Confidence 543 25789999999999999999876422 11112221111 1255543 3333221 223467777888866544
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.7e-11 Score=130.17 Aligned_cols=96 Identities=13% Similarity=0.133 Sum_probs=81.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---CcccEEEeCCC-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPEL- 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~~- 140 (759)
.++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.|+++....+ .+++++++|+.+++ ++||+|++...
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 35789999999999999999999887899999995 9999988875443 34999999999876 79999999642
Q ss_pred ----ChhHHHHHHHHHHHhcccCcEEE
Q 004354 141 ----GHKLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 141 ----~~~~~~~~l~ei~rvLkpGG~li 163 (759)
.......++.++.++|||||+++
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEc
Confidence 12238889999999999999987
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-11 Score=128.23 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=85.1
Q ss_pred CCCCeEEEECCCcchhHHHHH--HhCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeecccCC--CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLY--DAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQ--GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~--~~G~~~VtgIDiS~~~I~~a~~r~~~~~~--~i~f~~~D~~~~~--gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|.++..++ .....+|+|+|+|+.+++.++++....+. +++++++|+.+++ ++||+|++...
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~ 196 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGL 196 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCSS
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECCh
Confidence 467899999999999999885 22234699999999999999998755432 4999999999887 89999999774
Q ss_pred ChhH-----HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 141 GHKL-----GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 141 ~~~~-----~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
.++. ...+++++.++|+|||++++.++..+
T Consensus 197 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 231 (305)
T 3ocj_A 197 NIYEPDDARVTELYRRFWQALKPGGALVTSFLTPP 231 (305)
T ss_dssp GGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 4432 44589999999999999999876543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-11 Score=120.84 Aligned_cols=135 Identities=14% Similarity=0.065 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHhhcCCCCccccc--cchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC--CeEEEEeCC
Q 004354 25 FTSKENWDKFFTIRGIGDSFEWY--AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFS 100 (759)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~eW~--~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~--~~VtgIDiS 100 (759)
|....+|+..|.... ..+.+. ...+.+...+...+.. .++.+|||+|||+|.++..+++.+. .+|+++|+|
T Consensus 37 ~~~~~~~~~~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~ 111 (215)
T 2yxe_A 37 FLPEHLKEYAYVDTP--LEIGYGQTISAIHMVGMMCELLDL---KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERI 111 (215)
T ss_dssp GSCGGGGGGTTSCSC--EEEETTEEECCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESC
T ss_pred cCCchhhhhcccCCC--ccCCCCcEeCcHHHHHHHHHhhCC---CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCC
Confidence 556667777775431 111111 1123444455555544 5778999999999999999998752 479999999
Q ss_pred HHHHHHHHHHhcc-CCCCcEEEEeecccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 101 KVVISDMLRRNVR-DRSDMRWRVMDMTSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 101 ~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+.+++.++++... ...++++.++|+.... +.||+|++....++.. .++.++|+|||++++....
T Consensus 112 ~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~----~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 112 PELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIP----EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSBBSSCC----HHHHHTEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCchHHHH----HHHHHHcCCCcEEEEEECC
Confidence 9999999887643 2356999999986533 6899999987554332 5889999999999988754
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=121.82 Aligned_cols=100 Identities=15% Similarity=0.125 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccC-C-CCcEEEEeecccCC--CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD-R-SDMRWRVMDMTSMQ--GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~-~-~~i~f~~~D~~~~~--gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.++++.... + .++++.++|+.+.. ++||+|+++..
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi~~~~ 188 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIP 188 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCS
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEEEcCc
Confidence 67789999999999999999987 2 346999999999999999887554 3 57999999998743 68999999543
Q ss_pred ChhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 141 GHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 141 ~~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
. ...+++++.++|+|||++++.+...
T Consensus 189 ~---~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 189 D---PWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp C---GGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred C---HHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 2 3578999999999999999998754
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.17 E-value=4.2e-10 Score=112.37 Aligned_cols=112 Identities=11% Similarity=0.061 Sum_probs=84.8
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQG 130 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~g 130 (759)
..+...+...+......++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.++++......+++++++|+.++++
T Consensus 32 ~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 111 (207)
T 1wy7_A 32 GNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNS 111 (207)
T ss_dssp HHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCC
T ss_pred hHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCC
Confidence 34444444443221224678999999999999999999887789999999999999998875544479999999999888
Q ss_pred cccEEEeCCCCh----hHHHHHHHHHHHhcccCcEEEE
Q 004354 131 GLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVC 164 (759)
Q Consensus 131 tfD~Ii~~~~~~----~~~~~~l~ei~rvLkpGG~lii 164 (759)
+||+|+++...+ .....+++++.+++ ||.+++
T Consensus 112 ~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 112 RVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp CCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred CCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEE
Confidence 999999976422 22467888999998 554443
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.6e-11 Score=118.99 Aligned_cols=121 Identities=19% Similarity=0.299 Sum_probs=88.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
.++.+|||+|||+|.++..+ + .+|+|+|+|+. ++++.++|+.+++ ++||+|++....++
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l---~-~~v~~~D~s~~--------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 127 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI---R-NPVHCFDLASL--------------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG 127 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC---C-SCEEEEESSCS--------------STTEEESCTTSCSCCTTCEEEEEEESCCCS
T ss_pred CCCCeEEEECCcCCHHHHHh---h-ccEEEEeCCCC--------------CceEEEeccccCCCCCCCEeEEEEehhccc
Confidence 45689999999999999877 2 35999999995 5678999998865 78999999775543
Q ss_pred H-HHHHHHHHHHhcccCcEEEEEEcCch----hhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCCc
Q 004354 144 L-GNQYLSEVKRLLKSGGKFVCLTLAES----HVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSS 214 (759)
Q Consensus 144 ~-~~~~l~ei~rvLkpGG~liiit~~~~----~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~~ 214 (759)
. ...+++++.++|+|||++++.++... .....++. ..||.+...... ....++++++|....
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~--~~Gf~~~~~~~~-------~~~~~~~~~~k~~~~ 194 (215)
T 2zfu_A 128 TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVT--KLGFKIVSKDLT-------NSHFFLFDFQKTGPP 194 (215)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHH--HTTEEEEEEECC-------STTCEEEEEEECSSC
T ss_pred cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHH--HCCCEEEEEecC-------CCeEEEEEEEecCcc
Confidence 3 78999999999999999999886542 12222322 236765543322 234577778886543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-10 Score=116.61 Aligned_cols=139 Identities=13% Similarity=0.110 Sum_probs=107.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--C-cccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--G-GLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--g-tfD~Ii~~~~ 140 (759)
+++.+|||+|||+|.++..++..|. .+|+++|+++.+++.|+++....+ .++++.++|..+.. + .||+|+....
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 3578999999999999999999874 469999999999999999886544 35999999988765 3 7999887666
Q ss_pred ChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeC
Q 004354 141 GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKE 211 (759)
Q Consensus 141 ~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~ 211 (759)
.-.....++....+.|+++|+|++.........+.++... ||.+.-..+-.++ ...|-++++.++
T Consensus 100 Gg~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~~~--Gf~i~~E~lv~e~----~~~Yeii~~~~~ 164 (230)
T 3lec_A 100 GGRLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLAAN--DFEIVAEDILTEN----DKRYEILVVKHG 164 (230)
T ss_dssp CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHT--TEEEEEEEEEEC------CEEEEEEEEEC
T ss_pred chHHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHHHC--CCEEEEEEEEEEC----CEEEEEEEEEeC
Confidence 6667889999999999999999999876655555555433 8888877764431 234445555554
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.9e-11 Score=128.45 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=93.5
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-C
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFH-GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-G 130 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~-~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-g 130 (759)
....+...+.. .++.+|||+|||+|.++..+++.+.. +|+++|+|+.+++.++++........++..+|+.+.. +
T Consensus 184 ~~~~ll~~l~~---~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~ 260 (343)
T 2pjd_A 184 GSQLLLSTLTP---HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKG 260 (343)
T ss_dssp HHHHHHHHSCT---TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCS
T ss_pred HHHHHHHhcCc---CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccC
Confidence 34556666643 35679999999999999999988643 7999999999999999988666666889999998765 8
Q ss_pred cccEEEeCCCChh-------HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 131 GLDALMEPELGHK-------LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 131 tfD~Ii~~~~~~~-------~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+||+|+++...++ ....+++++.++|+|||.++++....
T Consensus 261 ~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 261 RFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp CEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred CeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 9999999765442 27899999999999999999987543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=123.12 Aligned_cols=133 Identities=14% Similarity=0.188 Sum_probs=91.1
Q ss_pred HHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcch----hHHHHHHh-C-----CCeEEEE
Q 004354 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSR----LSEHLYDA-G-----FHGITNV 97 (759)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~----ls~~L~~~-G-----~~~VtgI 97 (759)
.+.|+.+++.-..+ .-+|+.+...+...-...+.. .+..+|||+|||||. ++..|++. + + +|+|+
T Consensus 69 ~~e~~~l~~~lt~~-~t~FfRd~~~f~~l~~~llp~---~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~-~I~at 143 (274)
T 1af7_A 69 SAEWQAFINALTTN-LTAFFREAHHFPILAEHARRR---HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRW-KVFAS 143 (274)
T ss_dssp CTHHHHHHHHHCCC-CCCTTTTTTHHHHHHHHHHHS---CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSE-EEEEE
T ss_pred HHHHHHHHHHHhhc-CccccCChHHHHHHHHHccCC---CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCe-EEEEE
Confidence 44566666543211 123555444443332233332 245799999999999 56556654 3 3 69999
Q ss_pred eCCHHHHHHHHHHhcc-----------------------CC---------CCcEEEEeecccCC----CcccEEEeCCCC
Q 004354 98 DFSKVVISDMLRRNVR-----------------------DR---------SDMRWRVMDMTSMQ----GGLDALMEPELG 141 (759)
Q Consensus 98 DiS~~~I~~a~~r~~~-----------------------~~---------~~i~f~~~D~~~~~----gtfD~Ii~~~~~ 141 (759)
|+|+.||+.|++.... .+ ..+.|.++|+.+.+ +.||+|+|.+..
T Consensus 144 Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvl 223 (274)
T 1af7_A 144 DIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVM 223 (274)
T ss_dssp ESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSG
T ss_pred ECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCch
Confidence 9999999999886410 00 26899999998843 689999997754
Q ss_pred h----hHHHHHHHHHHHhcccCcEEEEE
Q 004354 142 H----KLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 142 ~----~~~~~~l~ei~rvLkpGG~liii 165 (759)
. ....+++++++++|+|||++++-
T Consensus 224 iyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 224 IYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp GGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred HhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3 23689999999999999999863
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-11 Score=126.74 Aligned_cols=103 Identities=13% Similarity=0.092 Sum_probs=77.5
Q ss_pred CCCCeEEEECCCcchhHHHH----HHhCC-Ce--EEEEeCCHHHHHHHHHHhccC--CCCcE--EEEeecccC-------
Q 004354 67 SPPPQILVPGCGNSRLSEHL----YDAGF-HG--ITNVDFSKVVISDMLRRNVRD--RSDMR--WRVMDMTSM------- 128 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L----~~~G~-~~--VtgIDiS~~~I~~a~~r~~~~--~~~i~--f~~~D~~~~------- 128 (759)
.++.+|||||||+|.++..+ ...+. .. ++|+|+|+.|++.+++++... ..++. +.++|+.++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 45679999999999876543 33322 22 499999999999999887432 23444 445555432
Q ss_pred -C-CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 129 -Q-GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 129 -~-gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+ ++||+|++....++. ...++++++|+|||||++++.....
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 2 789999998877765 8899999999999999999987654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.6e-10 Score=117.72 Aligned_cols=140 Identities=11% Similarity=0.044 Sum_probs=108.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--C-cccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--G-GLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--g-tfD~Ii~~~~ 140 (759)
.++.+|||||||+|.++..|+..|. ..|+++|+++.+++.|++++...+ .++++.++|..+.. + .||+|+....
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 3578999999999999999999874 469999999999999999876554 35999999988765 4 5999987666
Q ss_pred ChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCC
Q 004354 141 GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKEN 212 (759)
Q Consensus 141 ~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~ 212 (759)
.-.....++.+..+.|+++|+|++.........+.++... ||.+.-..+-.+ ....|.++++.++.
T Consensus 100 Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~~--Gf~i~~E~lv~e----~~k~Yeii~~~~~~ 165 (244)
T 3gnl_A 100 GGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQN--NWLITSEAILRE----DNKVYEIMVLAPSE 165 (244)
T ss_dssp CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHH--TEEEEEEEEEEE----TTEEEEEEEEEECS
T ss_pred chHHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHHC--CCEEEEEEEEEE----CCEEEEEEEEEeCC
Confidence 6667889999999999999999998876555555554433 788766554432 24566677767654
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.1e-11 Score=129.63 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=83.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--gtfD~Ii~~~~~~ 142 (759)
.++.+|||||||+|.++..+++.|..+|+|+|+| .+++.++++....+ .+++++++|+.++. ++||+|++....+
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~ 140 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGY 140 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBT
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhh
Confidence 5678999999999999999999988789999999 99999988875543 45999999999877 7999999954222
Q ss_pred -----hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 143 -----KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 143 -----~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.....++.++.++|+|||.+++..
T Consensus 141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 141 FLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp TBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred cccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 237889999999999999987543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=127.83 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=90.3
Q ss_pred HHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeecccC
Q 004354 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSM 128 (759)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~----~~i~f~~~D~~~~ 128 (759)
...+...+.. .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.+++++...+ .+++|.++|+.+.
T Consensus 211 ~~~ll~~l~~---~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~ 287 (375)
T 4dcm_A 211 ARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 287 (375)
T ss_dssp HHHHHHTCCC---SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT
T ss_pred HHHHHHhCcc---cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc
Confidence 3456666654 456899999999999999999985 3479999999999999998875432 2588999999875
Q ss_pred C--CcccEEEeCCCChh-------HHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 129 Q--GGLDALMEPELGHK-------LGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 129 ~--gtfD~Ii~~~~~~~-------~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
. ++||+|+++...+. ....+++++.++|+|||+++++.....
T Consensus 288 ~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~ 338 (375)
T 4dcm_A 288 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL 338 (375)
T ss_dssp CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence 4 78999999765432 256799999999999999999875543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-10 Score=115.81 Aligned_cols=139 Identities=12% Similarity=0.141 Sum_probs=105.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc-CC-C-cccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS-MQ-G-GLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~-~~-g-tfD~Ii~~~~ 140 (759)
+++.+|||||||+|.++..++..+. .+|+++|+++.+++.|+++....+ .++++.++|..+ ++ + .||+|+....
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 3568999999999999999999874 469999999999999999886554 359999999864 44 4 6999987666
Q ss_pred ChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeC
Q 004354 141 GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKE 211 (759)
Q Consensus 141 ~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~ 211 (759)
.......++.+..+.|+++|++++.........+.++.. .||.+.-..+-.++ ...|-++++.++
T Consensus 94 Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~~--~Gf~i~~e~lv~e~----~~~Yeii~~~~~ 158 (225)
T 3kr9_A 94 GGRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQD--HGFQIVAESILEEA----GKFYEILVVEAG 158 (225)
T ss_dssp CHHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHHH--TTEEEEEEEEEEET----TEEEEEEEEEES
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHH--CCCEEEEEEEEEEC----CEEEEEEEEEeC
Confidence 666688999999999999999999877655555555443 37888877654421 233444455554
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.6e-11 Score=119.96 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=69.8
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-- 129 (759)
+...+...+.. ..++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.++++......+++++++|+.+..
T Consensus 17 ~~~~~~~~l~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 94 (215)
T 4dzr_A 17 LVEEAIRFLKR--MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIE 94 (215)
T ss_dssp HHHHHHHHHTT--CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHH
T ss_pred HHHHHHHHhhh--cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhh
Confidence 33444444431 13678999999999999999999853 26999999999999998877544347889999987632
Q ss_pred -----CcccEEEeCCCChh----------------------------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 -----GGLDALMEPELGHK----------------------------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 -----gtfD~Ii~~~~~~~----------------------------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++||+|+++...+. ....+++++.++|+|||+++++...
T Consensus 95 ~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 95 RAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred hhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 68999999632110 0178899999999999996555543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=114.51 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=76.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCChhH--
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHKL-- 144 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~~~-- 144 (759)
.++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.++++.. +++++++|+.+++++||+|+++...++.
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEISGKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGCCCCEEEEEECCCC-----
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC----CCEEEECcHHHCCCCeeEEEECCCchhccC
Confidence 4678999999999999999998877779999999999999988763 7999999999988899999998754433
Q ss_pred --HHHHHHHHHHhcccCcEEEEEE
Q 004354 145 --GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 145 --~~~~l~ei~rvLkpGG~liiit 166 (759)
...+++++.+++ |+.+++..
T Consensus 126 ~~~~~~l~~~~~~~--g~~~~~~~ 147 (200)
T 1ne2_A 126 HSDRAFIDKAFETS--MWIYSIGN 147 (200)
T ss_dssp --CHHHHHHHHHHE--EEEEEEEE
T ss_pred chhHHHHHHHHHhc--CcEEEEEc
Confidence 357889999998 55444443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.5e-11 Score=119.54 Aligned_cols=101 Identities=13% Similarity=0.276 Sum_probs=85.4
Q ss_pred CeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
.+||.||.|+|..+.+|...+| ..+|++||+|+.+++.|++++ |+. +++++++.+|+.+++....
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~~i~~~~gda~~~l~~~~---------- 126 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS-PSRVRFLLSRPLDVMSRLA---------- 126 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC-GGGEEEECSCHHHHGGGSC----------
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cCcEEEEEcCHHHHHHHhc----------
Confidence 4999999999999999998875 679999999999999999998 541 2689999999999987653
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
...||+|++|....+ -..+++.+.+.|+|||+|+++
T Consensus 127 ---------------------~~~fD~V~~d~~~~~-------------~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 127 ---------------------NDSYQLVFGQVSPMD-------------LKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp ---------------------TTCEEEEEECCCTTT-------------HHHHHHHHHHHEEEEEEEEET
T ss_pred ---------------------CCCcCeEEEcCcHHH-------------HHHHHHHHHHHcCCCcEEEEe
Confidence 267999999864332 156999999999999999985
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.7e-10 Score=123.89 Aligned_cols=100 Identities=10% Similarity=0.033 Sum_probs=80.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHH-------HHHhccCC---CCcEEEEeecc-c---C---
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDM-------LRRNVRDR---SDMRWRVMDMT-S---M--- 128 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a-------~~r~~~~~---~~i~f~~~D~~-~---~--- 128 (759)
.++.+|||||||+|.++..++.. |...|+|+|+|+.+++.| ++++...+ .+++++++|.. . +
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~ 320 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL 320 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc
Confidence 67889999999999999999985 666799999999999888 66664433 57999998644 2 1
Q ss_pred CCcccEEEeCCCCh-hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 129 QGGLDALMEPELGH-KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 129 ~gtfD~Ii~~~~~~-~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.+.||+|+++.... .....+++++.++|||||++++..
T Consensus 321 ~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 321 IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEee
Confidence 27899999865332 457788999999999999999874
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=119.64 Aligned_cols=101 Identities=21% Similarity=0.144 Sum_probs=81.4
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhcc---------CCCCcEEEEeeccc-CC-----Cc
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVR---------DRSDMRWRVMDMTS-MQ-----GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~---------~~~~i~f~~~D~~~-~~-----gt 131 (759)
++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.+++++.. ...++.++++|+.+ ++ ++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 567999999999999999998864 3799999999999999887543 33689999999987 32 78
Q ss_pred ccEEEeCCCChhH----------HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 132 LDALMEPELGHKL----------GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 132 fD~Ii~~~~~~~~----------~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+|.|+......+. ...++.++.++|+|||.+++.+-.
T Consensus 129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 129 LSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp EEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 9999865432221 158999999999999999998754
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=126.95 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=85.5
Q ss_pred HHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--
Q 004354 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-- 129 (759)
...+...+.. .++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.++++....+ .+++++++|+.+++
T Consensus 39 ~~~i~~~l~~---~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 114 (348)
T 2y1w_A 39 QRAILQNHTD---FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP 114 (348)
T ss_dssp HHHHHHTGGG---TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred HHHHHhcccc---CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC
Confidence 3344444433 46789999999999999999998877899999997 8888888765433 57999999999876
Q ss_pred CcccEEEeCCCCh----hHHHHHHHHHHHhcccCcEEEEE
Q 004354 130 GGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 130 gtfD~Ii~~~~~~----~~~~~~l~ei~rvLkpGG~liii 165 (759)
++||+|++....+ ......+.++.++|+|||.+++.
T Consensus 115 ~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 115 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 7899999975432 22567788899999999999854
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=117.60 Aligned_cols=97 Identities=14% Similarity=0.194 Sum_probs=81.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC--C---CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--Q---GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~--~---gtfD~Ii~~~~~ 141 (759)
.++.+|||+|||+|.++..+++.| .+++|+|+|+.+++.++++. .++.++|+.+. + ++||+|++....
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~------~~~~~~d~~~~~~~~~~~~fD~v~~~~~l 103 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL------DHVVLGDIETMDMPYEEEQFDCVIFGDVL 103 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS------SEEEESCTTTCCCCSCTTCEEEEEEESCG
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC------CcEEEcchhhcCCCCCCCccCEEEECChh
Confidence 367899999999999999999886 57999999999999887654 37899998763 2 789999997755
Q ss_pred hhH--HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 142 HKL--GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 142 ~~~--~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++. ...+++++.++|+|||++++.+....
T Consensus 104 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 104 EHLFDPWAVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp GGSSCHHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred hhcCCHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 443 78999999999999999999876543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-10 Score=118.88 Aligned_cols=136 Identities=12% Similarity=0.059 Sum_probs=96.9
Q ss_pred CCCCHHHHHHHHhhcCCCCccc--cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCH
Q 004354 24 DFTSKENWDKFFTIRGIGDSFE--WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101 (759)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~e--W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~ 101 (759)
.|....+|+..|.... ..+. .....+.+...+...+.. .++.+|||+|||+|.++..+++.+..+|+++|+|+
T Consensus 50 ~f~~~~~~~~~y~~~~--~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~ 124 (235)
T 1jg1_A 50 LSVEDKYKKYAHIDEP--LPIPAGQTVSAPHMVAIMLEIANL---KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIP 124 (235)
T ss_dssp GGSCGGGGGGTTSSSC--EECSTTCEECCHHHHHHHHHHHTC---CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCH
T ss_pred hhCCchhhhcCccCCC--cccCCCceeccHHHHHHHHHhcCC---CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCH
Confidence 4566667777665431 1221 112234455556666654 57789999999999999999987425699999999
Q ss_pred HHHHHHHHHhccC-CCCcEEEEeeccc-CC--CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 102 VVISDMLRRNVRD-RSDMRWRVMDMTS-MQ--GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 102 ~~I~~a~~r~~~~-~~~i~f~~~D~~~-~~--gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.+++.++++.... ..++++.++|+.. ++ +.||+|++....++. ..++.++|+|||++++....
T Consensus 125 ~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~----~~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 125 ELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKI----PEPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSC----CHHHHHTEEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCccEEEECCcHHHH----HHHHHHhcCCCcEEEEEEec
Confidence 9999999887543 3469999999732 22 459999997754432 34788999999999988754
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-10 Score=119.40 Aligned_cols=109 Identities=10% Similarity=0.001 Sum_probs=87.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|.|.++.++.+..|. ++++||++|.|++.|++++.- ...+++++.+|+.+.+....
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~----------- 125 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPR-QTHKVIPLKGLWEDVAPTLP----------- 125 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGG-CSSEEEEEESCHHHHGGGSC-----------
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhh-CCCceEEEeehHHhhccccc-----------
Confidence 34579999999999999999887664 899999999999999999843 34679999999998876544
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC-hHHHHHHHHHccCcCcEEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~-~~~fl~~~~~~L~~~Gilv~ 675 (759)
+..||.|+.|....... ..++. -..+++.++++|+|||+|++
T Consensus 126 --------------------~~~FD~i~~D~~~~~~~------~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 126 --------------------DGHFDGILYDTYPLSEE------TWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp --------------------TTCEEEEEECCCCCBGG------GTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred --------------------ccCCceEEEeeeecccc------hhhhcchhhhhhhhhheeCCCCEEEE
Confidence 46799999987654211 22222 35688999999999999986
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-10 Score=118.11 Aligned_cols=108 Identities=14% Similarity=0.238 Sum_probs=88.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
..+.+||.||.|+|..+.++...+| ..+|++||+||.++++|++++ |+ +++++++++|+.+++......
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l~~l~~~----- 141 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV--EHKINFIESDAMLALDNLLQG----- 141 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHS-----
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHhc-----
Confidence 3567999999999999999999887 679999999999999999998 55 568999999999998765310
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
......||+|++|.+.. ....+++.+.+.|+|||++++.
T Consensus 142 ---------------------~~~~~~fD~I~~d~~~~-------------~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 142 ---------------------QESEGSYDFGFVDADKP-------------NYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp ---------------------TTCTTCEEEEEECSCGG-------------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------cCCCCCcCEEEECCchH-------------HHHHHHHHHHHhcCCCeEEEEe
Confidence 00125799999985432 1278999999999999999984
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=117.36 Aligned_cols=111 Identities=14% Similarity=0.063 Sum_probs=87.1
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~ 127 (759)
+.....+..++.. .++.+|||+|||+|..+..|++.. ..+|+++|+|+.+++.+++++.... .+++++++|+.+
T Consensus 57 ~~~~~~l~~~~~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (232)
T 3ntv_A 57 RLTLDLIKQLIRM---NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALE 133 (232)
T ss_dssp HHHHHHHHHHHHH---HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred HHHHHHHHHHHhh---cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHH
Confidence 3444455555443 357899999999999999999842 3469999999999999999875544 479999999976
Q ss_pred C-----CCcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 128 M-----QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 128 ~-----~gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
. .++||+|++.... .....+++++.++|+|||++++-
T Consensus 134 ~~~~~~~~~fD~V~~~~~~-~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 134 QFENVNDKVYDMIFIDAAK-AQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp CHHHHTTSCEEEEEEETTS-SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHhhccCCccEEEEcCcH-HHHHHHHHHHHHhcCCCeEEEEe
Confidence 4 2789999986532 23677999999999999999874
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.1e-10 Score=117.69 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=87.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
..+.+||.||.|+|..+..+...+| ..+|++||+++.+++.|++++ |+ +++++++++|+.+++......
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l~~l~~~----- 150 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV--DHKIDFREGPALPVLDEMIKD----- 150 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHS-----
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCeEEEECCHHHHHHHHHhc-----
Confidence 3567999999999999999999887 679999999999999999987 54 568999999999998765200
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
+.....||+|++|.+..+ ...+|+.+.+.|+|||+|++.
T Consensus 151 ---------------------~~~~~~fD~V~~d~~~~~-------------~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 151 ---------------------EKNHGSYDFIFVDADKDN-------------YLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp ---------------------GGGTTCBSEEEECSCSTT-------------HHHHHHHHHHHBCTTCCEEEE
T ss_pred ---------------------cCCCCCEEEEEEcCchHH-------------HHHHHHHHHHhCCCCeEEEEe
Confidence 000257999999864321 268999999999999999874
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-10 Score=118.52 Aligned_cols=103 Identities=16% Similarity=0.167 Sum_probs=82.1
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHH------HHHHHHHHhccCC--CCcEEEEee-c--ccCC---C
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKV------VISDMLRRNVRDR--SDMRWRVMD-M--TSMQ---G 130 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~------~I~~a~~r~~~~~--~~i~f~~~D-~--~~~~---g 130 (759)
.++.+|||||||+|.++..+++. |. .+|+|+|+|+. +++.++++..... ++++++++| + ..++ +
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 121 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ 121 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence 57889999999999999999987 43 47999999997 8999988875443 479999998 3 3332 7
Q ss_pred cccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 131 GLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 131 tfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+||+|++....++. ...+++.+.++++|||++++.++..
T Consensus 122 ~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 122 HFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp CCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred CEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 89999997755443 5567777777777899999988654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-10 Score=117.53 Aligned_cols=112 Identities=17% Similarity=0.204 Sum_probs=89.6
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC-CC-cEEEEeeccc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SD-MRWRVMDMTS 127 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~-~~-i~f~~~D~~~ 127 (759)
.....+...+.. .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|+++....+ ++ +++.++|+.+
T Consensus 80 ~~~~~i~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 156 (255)
T 3mb5_A 80 KDAALIVAYAGI---SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE 156 (255)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred hHHHHHHHhhCC---CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence 334455555554 67889999999999999999988 4 3579999999999999998875432 34 9999999986
Q ss_pred CC--CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 128 MQ--GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 128 ~~--gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.. ++||+|+++... ...+++++.++|+|||++++.+...
T Consensus 157 ~~~~~~~D~v~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~ 197 (255)
T 3mb5_A 157 GIEEENVDHVILDLPQ---PERVVEHAAKALKPGGFFVAYTPCS 197 (255)
T ss_dssp CCCCCSEEEEEECSSC---GGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccCCCCcCEEEECCCC---HHHHHHHHHHHcCCCCEEEEEECCH
Confidence 54 789999996543 3568999999999999999987653
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-10 Score=122.92 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=79.6
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---CcccEEEeCCCC-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---GGLDALMEPELG- 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---gtfD~Ii~~~~~- 141 (759)
++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|+++....+ .+++++++|+.+++ ++||+|++....
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 567999999999999999999888789999999 58999888775433 46999999998875 789999986421
Q ss_pred ----hhHHHHHHHHHHHhcccCcEEE
Q 004354 142 ----HKLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 142 ----~~~~~~~l~ei~rvLkpGG~li 163 (759)
......++.++.++|+|||+++
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 1227789999999999999987
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=119.07 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=73.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCC-HHHHHHH---HHHhcc-CCCCcEEEEeecccCC----CcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFS-KVVISDM---LRRNVR-DRSDMRWRVMDMTSMQ----GGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS-~~~I~~a---~~r~~~-~~~~i~f~~~D~~~~~----gtfD~Ii~ 137 (759)
++.+|||||||+|.++..|++.. ..+|+|+|+| +.+++.| +++... ..+++.|+++|+.+++ +.+|.|.+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 67899999999999999998642 2369999999 7676665 555533 3357999999999987 33444444
Q ss_pred CCCChhH-------HHHHHHHHHHhcccCcEEEEEE
Q 004354 138 PELGHKL-------GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 138 ~~~~~~~-------~~~~l~ei~rvLkpGG~liiit 166 (759)
+...... ...++++++|+|||||++++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 3321111 2568999999999999999854
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=8.6e-10 Score=111.56 Aligned_cols=107 Identities=12% Similarity=0.169 Sum_probs=88.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+.+||.||.|+|..+.++...+| ..+|++||+++.+++.|++++ |+ .++++++.+|+.+++.....
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~------- 128 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL--NDRVEVRTGLALDSLQQIEN------- 128 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHH-------
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHh-------
Confidence 457999999999999999999988 679999999999999999987 54 56899999999998876541
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
.....||+|++|.... ....+|+.+.+.|+|||++++.-+
T Consensus 129 ---------------------~~~~~fD~v~~d~~~~-------------~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 129 ---------------------EKYEPFDFIFIDADKQ-------------NNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp ---------------------TTCCCCSEEEECSCGG-------------GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred ---------------------cCCCCcCEEEEcCCcH-------------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 0125699999976422 126899999999999999998643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=4e-10 Score=116.68 Aligned_cols=105 Identities=17% Similarity=0.277 Sum_probs=88.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+.+||.||+|+|..+..|...+| ..+|++||++|.+++.|++++ |+ .++++++.+|+.+++....
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~l~~~~-------- 132 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV--DQRVTLREGPALQSLESLG-------- 132 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHTCC--------
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHhcC--------
Confidence 457999999999999999999887 789999999999999999998 55 4689999999999887643
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
....||+|++|....+ ...+|+.+.+.|+|||+|++.-+
T Consensus 133 ----------------------~~~~fD~V~~d~~~~~-------------~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 133 ----------------------ECPAFDLIFIDADKPN-------------NPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp ----------------------SCCCCSEEEECSCGGG-------------HHHHHHHHHHTCCTTCEEEEECC
T ss_pred ----------------------CCCCeEEEEECCchHH-------------HHHHHHHHHHhcCCCeEEEEeCC
Confidence 1257999999764221 25799999999999999998643
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-10 Score=116.07 Aligned_cols=99 Identities=11% Similarity=0.121 Sum_probs=75.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhc-----cCCCCcEEEEeecccCC---CcccEEEe
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQ---GGLDALME 137 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~-----~~~~~i~f~~~D~~~~~---gtfD~Ii~ 137 (759)
.++.+|||+|||+|.++..|++.+ ..+|+|+|+|+.+++.+.+++. ...++++|+++|+.+++ +. |.++.
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 467899999999999999999884 2469999999998886443321 23358999999999887 44 77664
Q ss_pred CCCChhH-------HHHHHHHHHHhcccCcEEEEEE
Q 004354 138 PELGHKL-------GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 138 ~~~~~~~-------~~~~l~ei~rvLkpGG~liiit 166 (759)
....... ...+++++.++|||||++++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 3221111 3789999999999999999843
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.09 E-value=7.7e-10 Score=110.20 Aligned_cols=94 Identities=13% Similarity=0.252 Sum_probs=75.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--------------Ccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------------GGL 132 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--------------gtf 132 (759)
.++.+|||+|||+|.++..+++.+. .|+|+|+++. ...++++++++|+++.. ++|
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~~-~V~gvD~~~~----------~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 92 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLAR-KIISIDLQEM----------EEIAGVRFIRCDIFKETIFDDIDRALREEGIEKV 92 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTCS-EEEEEESSCC----------CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSE
T ss_pred CCCCEEEEEeecCCHHHHHHHHcCC-cEEEEecccc----------ccCCCeEEEEccccCHHHHHHHHHHhhcccCCcc
Confidence 4678999999999999999998844 6999999983 12357999999998864 389
Q ss_pred cEEEeCCCC----hh---------HHHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 133 DALMEPELG----HK---------LGNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 133 D~Ii~~~~~----~~---------~~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
|+|+++... .+ ....+++.+.++|||||.|++..+..+.
T Consensus 93 D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~ 144 (191)
T 3dou_A 93 DDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM 144 (191)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred eEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence 999996421 11 1467889999999999999998886543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-10 Score=115.13 Aligned_cols=100 Identities=11% Similarity=-0.022 Sum_probs=81.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--------CcccE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--------GGLDA 134 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--------gtfD~ 134 (759)
.++.+|||+|||+|..+..+++.- ..+|+++|+++.+++.+++++...+ .+++++++|+.+.. ++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 356899999999999999999872 2369999999999999998875433 35999999987642 46999
Q ss_pred EEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 135 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 135 Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|++... ......+++++.++|+|||++++-..
T Consensus 137 v~~d~~-~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 137 IFIDAD-KQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EEECSC-GGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEEcCC-cHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 998764 33467899999999999998887643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=3e-10 Score=117.62 Aligned_cols=100 Identities=9% Similarity=-0.033 Sum_probs=81.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC------CcccEEE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ------GGLDALM 136 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~------gtfD~Ii 136 (759)
.++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.+++++...+ .+++++++|+.+.. ++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 35689999999999999999986 1 3469999999999999999875433 46999999987632 4899999
Q ss_pred eCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 137 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 137 ~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+... ......+++++.++|+|||++++...
T Consensus 142 ~d~~-~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 142 IDAD-KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp ECSC-GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred ECCc-hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 8653 33467899999999999999988654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-10 Score=121.26 Aligned_cols=99 Identities=17% Similarity=0.068 Sum_probs=80.9
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--CcccEEEeCCCCh-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--GGLDALMEPELGH- 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--gtfD~Ii~~~~~~- 142 (759)
++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++....+ .+++++++|+.+.. ++||+|+++....
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~~ 188 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYID 188 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCCC
Confidence 5679999999999999999865 33479999999999999998875433 46999999997753 7899999973110
Q ss_pred --------------------------hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 143 --------------------------KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 143 --------------------------~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.....+++++.++|+|||++++..
T Consensus 189 ~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 189 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred ccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 235789999999999999998865
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=115.00 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=83.0
Q ss_pred CCCeEEEECCCc---chhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC-------------C-
Q 004354 68 PPPQILVPGCGN---SRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-------------Q- 129 (759)
Q Consensus 68 ~~~~ILDlGCG~---G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~-------------~- 129 (759)
...+|||||||+ |.++..+.+.. -.+|+++|+|+.|++.+++++. ...+++|+++|+.+. +
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~-~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA-KDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT-TCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC-CCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 447999999999 99887776652 2369999999999999998874 346799999999753 2
Q ss_pred CcccEEEeCCCChhH----HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 130 GGLDALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 130 gtfD~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.+||+|++....|+. ...++++++++|+|||++++..+..
T Consensus 156 ~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp TSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 579999998765543 6899999999999999999998764
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=116.34 Aligned_cols=98 Identities=9% Similarity=0.004 Sum_probs=79.8
Q ss_pred CCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEEeecccCC-----CcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQ-----GGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~---~~i~f~~~D~~~~~-----gtfD~Ii~ 137 (759)
+..+|||+|||+|..+..|++. + ..+|+++|+|+.+++.+++++...+ .+++++++|+.+.. ++||+|++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 3459999999999999999885 2 2469999999999999999876533 36999999986542 78999999
Q ss_pred CCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 138 PELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 138 ~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.... .....+++++.++|+|||++++-.
T Consensus 136 d~~~-~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 136 QVSP-MDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CCCT-TTHHHHHHHHHHHEEEEEEEEETT
T ss_pred cCcH-HHHHHHHHHHHHHcCCCcEEEEeC
Confidence 7542 235679999999999999999743
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.1e-10 Score=118.01 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=89.8
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccC----CCCcEEEEeecc
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMT 126 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~----~~~i~f~~~D~~ 126 (759)
....+...+.. .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.++++.... ..++++.++|+.
T Consensus 87 ~~~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~ 163 (280)
T 1i9g_A 87 DAAQIVHEGDI---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA 163 (280)
T ss_dssp HHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred HHHHHHHHcCC---CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH
Confidence 33444455543 57789999999999999999985 3 347999999999999999887543 367999999998
Q ss_pred cCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 127 SMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 127 ~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+.+ +.||+|+++... ...+++++.++|+|||++++.+....
T Consensus 164 ~~~~~~~~~D~v~~~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~ 207 (280)
T 1i9g_A 164 DSELPDGSVDRAVLDMLA---PWEVLDAVSRLLVAGGVLMVYVATVT 207 (280)
T ss_dssp GCCCCTTCEEEEEEESSC---GGGGHHHHHHHEEEEEEEEEEESSHH
T ss_pred hcCCCCCceeEEEECCcC---HHHHHHHHHHhCCCCCEEEEEeCCHH
Confidence 765 789999995433 34789999999999999999987644
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-10 Score=121.77 Aligned_cols=119 Identities=18% Similarity=0.101 Sum_probs=90.3
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-C--CcEEEE
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-S--DMRWRV 122 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~--~i~f~~ 122 (759)
|+.+.......+..++.. ..++.+|||+|||+|.++..++..|. +|+++|+|+.+++.+++++.... . ++++++
T Consensus 133 ~f~dq~~~~~~l~~~~~~--~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~ 209 (332)
T 2igt_A 133 VFPEQIVHWEWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC 209 (332)
T ss_dssp CCGGGHHHHHHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC
T ss_pred echHHHHHHHHHHHHHHh--cCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence 344444445556666631 02567999999999999999999888 79999999999999998875432 2 489999
Q ss_pred eecccCC-------CcccEEEeCCCC------------hhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 123 MDMTSMQ-------GGLDALMEPELG------------HKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 123 ~D~~~~~-------gtfD~Ii~~~~~------------~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+|+.+.. ++||+|+++... ......++.++.++|+|||.+++...
T Consensus 210 ~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 210 EDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp SCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred CcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 9997753 589999996421 11267899999999999999776653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.7e-10 Score=121.33 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=89.6
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhcc------------CCC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVR------------DRS 116 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~------------~~~ 116 (759)
+.....+...+.. .++.+|||+|||+|.++..++.. |. .+|+++|+++.+++.|+++... ...
T Consensus 91 ~~~~~~~l~~l~~---~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~ 167 (336)
T 2b25_A 91 PKDINMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD 167 (336)
T ss_dssp HHHHHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred HHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCC
Confidence 3334445555544 57889999999999999999987 54 5799999999999999988653 125
Q ss_pred CcEEEEeecccCC-----CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 117 DMRWRVMDMTSMQ-----GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 117 ~i~f~~~D~~~~~-----gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
++++.++|+.+.. +.||+|+++...+ ..++.++.++|+|||++++........
T Consensus 168 ~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~---~~~l~~~~~~LkpgG~lv~~~~~~~~~ 225 (336)
T 2b25_A 168 NVDFIHKDISGATEDIKSLTFDAVALDMLNP---HVTLPVFYPHLKHGGVCAVYVVNITQV 225 (336)
T ss_dssp CEEEEESCTTCCC-------EEEEEECSSST---TTTHHHHGGGEEEEEEEEEEESSHHHH
T ss_pred ceEEEECChHHcccccCCCCeeEEEECCCCH---HHHHHHHHHhcCCCcEEEEEeCCHHHH
Confidence 7999999998752 6899999965433 237899999999999999888765443
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=8e-10 Score=106.12 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=75.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC----------C-Cccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM----------Q-GGLD 133 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~----------~-gtfD 133 (759)
.++.+|||+|||+|.++..+++. |. .+++++|+|+ +++. +++++.++|+.+. + ++||
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------VGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------TTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------CcEEEEEcccccchhhhhhhccCCCCcee
Confidence 46789999999999999999887 43 5799999999 6531 5789999999774 2 6899
Q ss_pred EEEeCCCChhH-------------HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 134 ALMEPELGHKL-------------GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 134 ~Ii~~~~~~~~-------------~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+|+++...++. ...+++++.++|+|||.+++.++..+
T Consensus 91 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred EEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 99996532211 26899999999999999999887654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-10 Score=122.07 Aligned_cols=99 Identities=11% Similarity=0.003 Sum_probs=79.2
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeecccCC-Ccc---cEEEeCCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQ-GGL---DALMEPELG 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~--~i~f~~~D~~~~~-gtf---D~Ii~~~~~ 141 (759)
++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++....+. +++|+++|+.+.. ++| |+|+++...
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPPy 202 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY 202 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCCC
Confidence 4579999999999999999887334699999999999999988755432 4999999998754 788 999997311
Q ss_pred h-----------hH----------HHHHHHHHH-HhcccCcEEEEEE
Q 004354 142 H-----------KL----------GNQYLSEVK-RLLKSGGKFVCLT 166 (759)
Q Consensus 142 ~-----------~~----------~~~~l~ei~-rvLkpGG~liiit 166 (759)
. +. ...+++++. +.|+|||.+++..
T Consensus 203 i~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 203 VKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp BCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 0 01 127899999 9999999999754
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.1e-10 Score=115.28 Aligned_cols=101 Identities=18% Similarity=0.289 Sum_probs=86.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHH-hhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVR-EMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~-~~~~~~~~~~~ 604 (759)
.+.+||.||+|+|..+.+|...+|..+|++||+++.+++.|++++ |+ .++++++.+|+.+++. ...
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~-------- 140 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF--ENQVRIIEGNALEQFENVND-------- 140 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC--TTTEEEEESCGGGCHHHHTT--------
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECCHHHHHHhhcc--------
Confidence 457999999999999999999888889999999999999999987 44 4689999999998876 432
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
.+||+|++|....+ ...+++.+.+.|+|||+|+++
T Consensus 141 ------------------------~~fD~V~~~~~~~~-------------~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 141 ------------------------KVYDMIFIDAAKAQ-------------SKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp ------------------------SCEEEEEEETTSSS-------------HHHHHHHHGGGEEEEEEEEEE
T ss_pred ------------------------CCccEEEEcCcHHH-------------HHHHHHHHHHhcCCCeEEEEe
Confidence 57999999864321 267999999999999999984
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.3e-10 Score=114.66 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=81.5
Q ss_pred CCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---------CcccE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---------GGLDA 134 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---------gtfD~ 134 (759)
++.+|||+|||+|..+..+++. + ..+|+++|+|+.+++.+++++...+ .+++++++|+.+.. ++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 5679999999999999999986 1 3469999999999999998875443 35999999986542 57999
Q ss_pred EEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 135 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 135 Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|++... ......+++++.++|+|||++++...
T Consensus 144 v~~~~~-~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 144 IYIDAD-KANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EEECSC-GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEECCC-HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 998653 33467899999999999999998654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.7e-11 Score=130.75 Aligned_cols=100 Identities=17% Similarity=0.230 Sum_probs=78.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~ 143 (759)
.++.+|||||||+|.++..|++.|+ +|+|+|+|+.+++.++++.. ......|...+...++ ++||+|++....++
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h 183 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGI-RVRTDFFEKATADDVRRTEGPANVIYAANTLCH 183 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTC-CEECSCCSHHHHHHHHHHHCCEEEEEEESCGGG
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCC-CcceeeechhhHhhcccCCCCEEEEEECChHHh
Confidence 5778999999999999999999887 59999999999998876521 0001112233444433 88999999886655
Q ss_pred H--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 144 L--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 144 ~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
. ...++++++++|||||++++.+..
T Consensus 184 ~~d~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 184 IPYVQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp CTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 4 899999999999999999987654
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.2e-10 Score=117.07 Aligned_cols=101 Identities=8% Similarity=0.016 Sum_probs=84.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--gtfD~Ii~~~~~~ 142 (759)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.+++++.... .++.++++|+.+.+ +.||+|+++...
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~- 196 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH- 196 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS-
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc-
Confidence 467899999999999999999873 3479999999999999998875543 57899999998874 689999997643
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
....++.++.++|+|||.+++..+..
T Consensus 197 -~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 -KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp -SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred -cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 35678899999999999999887654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-09 Score=112.24 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.++++..... .++++.++|+.+.. +.||+|+++..
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~~~ 190 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVP 190 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCS
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEECCc
Confidence 57789999999999999999987 4 3579999999999999998875543 47899999987754 68999999653
Q ss_pred ChhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 141 GHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 141 ~~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
. ...+++++.++|+|||++++.+...
T Consensus 191 ~---~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (277)
T 1o54_A 191 D---PWNYIDKCWEALKGGGRFATVCPTT 216 (277)
T ss_dssp C---GGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred C---HHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 3 3478999999999999999998753
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-10 Score=119.20 Aligned_cols=107 Identities=12% Similarity=0.261 Sum_probs=87.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+.+||.||.|+|..+.+|...+| ..+|++||++|.+++.|++++ |+ .++++++.+|+.+++.....
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l~~~~~------- 130 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ--EHKIKLRLGPALDTLHSLLN------- 130 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC--TTTEEEEESCHHHHHHHHHH-------
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHhh-------
Confidence 457999999999999999999886 679999999999999999998 55 56899999999999876520
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
......||+|++|....+ ...+|+.+.+.|+|||+|++.-
T Consensus 131 --------------------~~~~~~fD~V~~d~~~~~-------------~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 131 --------------------EGGEHQFDFIFIDADKTN-------------YLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp --------------------HHCSSCEEEEEEESCGGG-------------HHHHHHHHHHHEEEEEEEEEEC
T ss_pred --------------------ccCCCCEeEEEEcCChHH-------------hHHHHHHHHHhcCCCeEEEEEC
Confidence 000257999999874221 2569999999999999999853
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.4e-10 Score=123.66 Aligned_cols=118 Identities=13% Similarity=0.063 Sum_probs=91.3
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeec
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~ 125 (759)
||.+....+..+..++ .++.+|||+|||+|.++..++..|.. |+++|+|+.+++.+++++...+...++.++|+
T Consensus 197 ~f~dqr~~r~~l~~~~-----~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~~~~~~D~ 270 (393)
T 4dmg_A 197 YYLDQRENRRLFEAMV-----RPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRVDIRHGEA 270 (393)
T ss_dssp SCGGGHHHHHHHHTTC-----CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCH
T ss_pred cCCCHHHHHHHHHHHh-----cCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCCcEEEccH
Confidence 4444444455555444 25789999999999999999998887 99999999999999998765444457889998
Q ss_pred ccCC----CcccEEEeCCCC-----------hhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 126 TSMQ----GGLDALMEPELG-----------HKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 126 ~~~~----gtfD~Ii~~~~~-----------~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.+.. +.||+|+++... ......++..+.++|+|||.+++.+...
T Consensus 271 ~~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 271 LPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp HHHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 7752 559999996532 1125688999999999999999888764
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.6e-10 Score=119.88 Aligned_cols=109 Identities=14% Similarity=0.069 Sum_probs=86.7
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~--~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~ 128 (759)
.....+...+.. .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.++++.... ..++++.++|+.+.
T Consensus 62 ~~~~~l~~~l~~---~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~ 138 (317)
T 1dl5_A 62 SLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG 138 (317)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred HHHHHHHHhcCC---CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc
Confidence 444555555544 5788999999999999999998744 35999999999999999887543 35699999999885
Q ss_pred C---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 129 Q---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 129 ~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
. +.||+|++....++.. +++.++|||||++++...
T Consensus 139 ~~~~~~fD~Iv~~~~~~~~~----~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 139 VPEFSPYDVIFVTVGVDEVP----ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CGGGCCEEEEEECSBBSCCC----HHHHHHEEEEEEEEEEBC
T ss_pred cccCCCeEEEEEcCCHHHHH----HHHHHhcCCCcEEEEEEC
Confidence 3 7899999987554433 578899999999998753
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.03 E-value=3.6e-10 Score=114.55 Aligned_cols=113 Identities=9% Similarity=0.031 Sum_probs=84.5
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~ 127 (759)
.....+..++.. .++.+|||+|||+|..+..+++. + ..+|+++|+|+.+++.+++++.... .+++++++|+.+
T Consensus 45 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 121 (221)
T 3u81_A 45 AKGQIMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD 121 (221)
T ss_dssp HHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred HHHHHHHHHHHh---cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHH
Confidence 344444444432 35679999999999999999984 1 2369999999999999998875433 359999999755
Q ss_pred C----C-----CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 128 M----Q-----GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 128 ~----~-----gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
. . ++||+|++....+.. ...++..+ ++|+|||++++....
T Consensus 122 ~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 122 LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp HGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred HHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 3 1 489999997744433 44667777 999999999887654
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.4e-10 Score=114.02 Aligned_cols=115 Identities=12% Similarity=0.076 Sum_probs=90.2
Q ss_pred chhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeec
Q 004354 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (759)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~ 125 (759)
..+.....+...+.. .++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.+++++...+ .+++++++|+
T Consensus 38 ~~~~~~~~l~~~~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 114 (233)
T 2gpy_A 38 MDLLGMESLLHLLKM---AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDA 114 (233)
T ss_dssp CCHHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCG
T ss_pred cCHHHHHHHHHHHhc---cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH
Confidence 334555556555543 457799999999999999999873 3469999999999999998875443 4699999999
Q ss_pred ccC------CCcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 126 TSM------QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 126 ~~~------~gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.+. .++||+|++.... .....+++++.++|+|||++++.+.
T Consensus 115 ~~~~~~~~~~~~fD~I~~~~~~-~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 115 LQLGEKLELYPLFDVLFIDAAK-GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp GGSHHHHTTSCCEEEEEEEGGG-SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred HHHHHhcccCCCccEEEECCCH-HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 874 2689999986532 2467899999999999999998743
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.2e-10 Score=112.03 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=86.3
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC------CeEEEEeCCHHHHHHHHHHhccC------CCCcE
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF------HGITNVDFSKVVISDMLRRNVRD------RSDMR 119 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~------~~VtgIDiS~~~I~~a~~r~~~~------~~~i~ 119 (759)
.....+.+.+.. ...++.+|||+|||+|.++..+++... .+|+++|+|+.+++.++++.... ..+++
T Consensus 65 ~~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~ 143 (227)
T 2pbf_A 65 HMHALSLKRLIN-VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFK 143 (227)
T ss_dssp HHHHHHHHHHTT-TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEE
T ss_pred HHHHHHHHHHHh-hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEE
Confidence 344444555521 125678999999999999999998743 37999999999999999886543 35799
Q ss_pred EEEeecccC-----C--CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 120 WRVMDMTSM-----Q--GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 120 f~~~D~~~~-----~--gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+.++|+.+. . ++||+|++....++ +++++.++|+|||++++...
T Consensus 144 ~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~----~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 144 IIHKNIYQVNEEEKKELGLFDAIHVGASASE----LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp EEECCGGGCCHHHHHHHCCEEEEEECSBBSS----CCHHHHHHEEEEEEEEEEEE
T ss_pred EEECChHhcccccCccCCCcCEEEECCchHH----HHHHHHHhcCCCcEEEEEEc
Confidence 999999774 2 78999999875543 46888999999999998865
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.6e-10 Score=112.64 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=85.5
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccC------CCCcEEEEee
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD------RSDMRWRVMD 124 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~------~~~i~f~~~D 124 (759)
....+...+.. ...++.+|||+|||+|.++..+++. |. .+|+++|+|+.+++.++++.... ..++++.++|
T Consensus 63 ~~~~~l~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 141 (226)
T 1i1n_A 63 MHAYALELLFD-QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD 141 (226)
T ss_dssp HHHHHHHHTTT-TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred HHHHHHHHHHh-hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECC
Confidence 33344444431 1256789999999999999999876 43 37999999999999998876542 3479999999
Q ss_pred cccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 125 MTSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 125 ~~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+.... +.||+|++....+ .+++++.++|+|||++++....
T Consensus 142 ~~~~~~~~~~fD~i~~~~~~~----~~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 142 GRMGYAEEAPYDAIHVGAAAP----VVPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp GGGCCGGGCCEEEEEECSBBS----SCCHHHHHTEEEEEEEEEEESC
T ss_pred cccCcccCCCcCEEEECCchH----HHHHHHHHhcCCCcEEEEEEec
Confidence 87654 7899999976543 3457889999999999988653
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-09 Score=117.67 Aligned_cols=146 Identities=14% Similarity=0.192 Sum_probs=103.1
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~ 128 (759)
.+...+.... . .++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|++++...+ .+++|.++|+.++
T Consensus 205 ~la~~l~~~~-~---~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~ 280 (373)
T 3tm4_A 205 SIANAMIELA-E---LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL 280 (373)
T ss_dssp HHHHHHHHHH-T---CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG
T ss_pred HHHHHHHHhh-c---CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence 3444444444 3 5778999999999999999998865 269999999999999999886554 3799999999988
Q ss_pred C---CcccEEEeCCCC----------hhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeCCCC
Q 004354 129 Q---GGLDALMEPELG----------HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKS 195 (759)
Q Consensus 129 ~---gtfD~Ii~~~~~----------~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~~~ 195 (759)
+ ++||+|+++... ......+++++.++| ||.+++++.....+.+ ++.. .||.+.-.....
T Consensus 281 ~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~~~-~~~~--~G~~~~~~~~~~-- 353 (373)
T 3tm4_A 281 SQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKAIEE-AIAE--NGFEIIHHRVIG-- 353 (373)
T ss_dssp GGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHHHHH-HHHH--TTEEEEEEEEEE--
T ss_pred CcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHH-HHHH--cCCEEEEEEEEE--
Confidence 7 789999996421 112478889999999 6777777765444333 3322 266654433222
Q ss_pred CCCCCceEEEEEEEe
Q 004354 196 SSEPSLQTFMVVADK 210 (759)
Q Consensus 196 ~~~~~~~~f~~v~~K 210 (759)
...+..++|....
T Consensus 354 --nG~l~~~~~~~~~ 366 (373)
T 3tm4_A 354 --HGGLMVHLYVVKL 366 (373)
T ss_dssp --ETTEEEEEEEEEE
T ss_pred --cCCEEEEEEeccC
Confidence 2356677776543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-09 Score=114.01 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=78.6
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeC-CHHHHHHHHHHh-----ccCC------CCcEEEEeecccC------
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF-SKVVISDMLRRN-----VRDR------SDMRWRVMDMTSM------ 128 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDi-S~~~I~~a~~r~-----~~~~------~~i~f~~~D~~~~------ 128 (759)
.++.+|||+|||+|.++..++..|..+|+++|+ |+.+++.++++. .... .++++...|..+.
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 356799999999999999999888767999999 899999998887 2222 3688887775442
Q ss_pred ---CCcccEEEeCCCChh--HHHHHHHHHHHhcc---c--CcEEEEEE
Q 004354 129 ---QGGLDALMEPELGHK--LGNQYLSEVKRLLK---S--GGKFVCLT 166 (759)
Q Consensus 129 ---~gtfD~Ii~~~~~~~--~~~~~l~ei~rvLk---p--GG~liiit 166 (759)
.++||+|++.+..++ ....+++.+.++|+ | ||+++++.
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 268999998664433 38899999999999 9 99876653
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.8e-10 Score=111.43 Aligned_cols=100 Identities=18% Similarity=0.292 Sum_probs=84.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+.+||.||.|+|..+..+...+| ..+|++||+++.+++.|++++ |+ .++++++.+|+.+++....
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~-------- 125 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL--IDRVELQVGDPLGIAAGQR-------- 125 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG--GGGEEEEESCHHHHHTTCC--------
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CceEEEEEecHHHHhccCC--------
Confidence 457999999999999999998887 779999999999999999887 54 4689999999998865432
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
. ||+|++|.... ....+++.+.+.|+|||+|++.
T Consensus 126 ------------------------~-fD~v~~~~~~~-------------~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 126 ------------------------D-IDILFMDCDVF-------------NGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp ------------------------S-EEEEEEETTTS-------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred ------------------------C-CCEEEEcCChh-------------hhHHHHHHHHHhcCCCeEEEEE
Confidence 5 99999985322 1268999999999999999984
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-10 Score=118.48 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=82.5
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh----C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~----G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~ 126 (759)
.....+..++.. .++.+|||||||+|..+..|++. + ..+|+|+|+|+.+++.++. ...+++++++|+.
T Consensus 68 ~~~~~l~~~l~~---~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~~~v~~~~gD~~ 140 (236)
T 2bm8_A 68 DTQAVYHDMLWE---LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DMENITLHQGDCS 140 (236)
T ss_dssp HHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GCTTEEEEECCSS
T ss_pred HHHHHHHHHHHh---cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cCCceEEEECcch
Confidence 334445444433 24579999999999999999886 2 2469999999999877651 2367999999998
Q ss_pred cC---C----CcccEEEeCCCChhHHHHHHHHHHH-hcccCcEEEEEEc
Q 004354 127 SM---Q----GGLDALMEPELGHKLGNQYLSEVKR-LLKSGGKFVCLTL 167 (759)
Q Consensus 127 ~~---~----gtfD~Ii~~~~~~~~~~~~l~ei~r-vLkpGG~liiit~ 167 (759)
+. + .+||+|++... +.....++.++.+ +|+|||++++..+
T Consensus 141 ~~~~l~~~~~~~fD~I~~d~~-~~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 141 DLTTFEHLREMAHPLIFIDNA-HANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp CSGGGGGGSSSCSSEEEEESS-CSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred hHHHHHhhccCCCCEEEECCc-hHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 84 3 37999998654 3356789999997 9999999999653
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=9.8e-10 Score=111.19 Aligned_cols=107 Identities=19% Similarity=0.298 Sum_probs=87.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+.+||.||.|+|..+.+|...+| ..+|++||+++.+++.|++++ |+ .++++++.+|+.+++.....
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~------- 134 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL--SDKIGLRLSPAKDTLAELIH------- 134 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHT-------
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeCCHHHHHHHhhh-------
Confidence 457999999999999999999887 679999999999999999998 54 46899999999998876541
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
+....+||+|++|.... ....+++.+.+.|+|||+|++.-
T Consensus 135 --------------------~~~~~~fD~v~~~~~~~-------------~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 135 --------------------AGQAWQYDLIYIDADKA-------------NTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp --------------------TTCTTCEEEEEECSCGG-------------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred --------------------ccCCCCccEEEECCCHH-------------HHHHHHHHHHHhcCCCcEEEEeC
Confidence 01125799999976322 12679999999999999998864
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-10 Score=132.02 Aligned_cols=100 Identities=21% Similarity=0.231 Sum_probs=81.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-----CcccEEEeCCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-----GGLDALMEPELG 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~-----gtfD~Ii~~~~~ 141 (759)
.+.+|||||||.|.+++.|++.|+. |||||+|+.+|+.|+.++...+ .+++|.++|+.++. +.||+|+|.+..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~-V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGAT-IVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCE-EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 4679999999999999999999985 9999999999999998875543 57999999998863 689999999877
Q ss_pred hhHH----HHHHHHHHHhcccCcEEEEEEcC
Q 004354 142 HKLG----NQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 142 ~~~~----~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++.. ...+..+.+.|+++|..++....
T Consensus 145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~ 175 (569)
T 4azs_A 145 HHIVHLHGIDEVKRLLSRLADVTQAVILELA 175 (569)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred hcCCCHHHHHHHHHHHHHhccccceeeEEec
Confidence 6651 22344567778888877666653
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-09 Score=116.90 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=83.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--gtfD~Ii~~~~~ 141 (759)
.+..+|||+|||+|.++..+++.. ..+++++|+| .+++.++++..... .+++|+++|+.+.+ +.||+|++....
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l 242 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFL 242 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCG
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchh
Confidence 356899999999999999999872 2369999999 99999988764322 35999999998755 559999997654
Q ss_pred hh----HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 142 HK----LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 142 ~~----~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+. ....+++++.++|+|||++++.+...
T Consensus 243 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 243 HHFDVATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 43 36799999999999999999987643
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.6e-10 Score=114.73 Aligned_cols=98 Identities=14% Similarity=-0.004 Sum_probs=80.4
Q ss_pred CCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC----------CCccc
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM----------QGGLD 133 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~----------~gtfD 133 (759)
+..+|||||||+|..+..+++.- ..+|+++|+|+.+++.+++++...+ .+++++++|+.+. .++||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 56799999999999999998861 2369999999999999998875443 4689999998653 26799
Q ss_pred EEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 134 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 134 ~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+|++... ......+++++.++|+|||++++-.
T Consensus 159 ~V~~d~~-~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 159 FIFVDAD-KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEEECSC-STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEcCc-hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9999754 2336789999999999999998754
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.8e-10 Score=125.10 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=80.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--gtfD~Ii~~~~~~ 142 (759)
.++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|+++....+ .+++++++|+.+++ +.||+|++....+
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~ 235 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY 235 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHH
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchH
Confidence 45789999999999999999988777899999999 9999888765443 57999999998865 7899999976422
Q ss_pred ----hHHHHHHHHHHHhcccCcEEEE
Q 004354 143 ----KLGNQYLSEVKRLLKSGGKFVC 164 (759)
Q Consensus 143 ----~~~~~~l~ei~rvLkpGG~lii 164 (759)
......+.++.++|+|||++++
T Consensus 236 ~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 236 MLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred hcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 2245677788999999999884
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=118.51 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=83.2
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC----CCcccEEEeCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM----QGGLDALMEPEL 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~----~gtfD~Ii~~~~ 140 (759)
...+|||||||+|.++..+++... .+++++|+ +.+++.++++..... .+++|+.+|+.+. ++.||+|++...
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~v 257 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQF 257 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESC
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEech
Confidence 467999999999999999998632 36999999 999999998875443 4799999999884 378999999775
Q ss_pred Chh----HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 141 GHK----LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 141 ~~~----~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.|. ....++++++++|+|||++++....
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 258 LDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp STTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 542 2578999999999999999998753
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-09 Score=109.66 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=87.1
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---C
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---G 130 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---g 130 (759)
.+...+.. .++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.++++..... .++++.+.|+.+.. +
T Consensus 82 ~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 82 YIALKLNL---NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHTTC---CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHhcCC---CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 44445443 57789999999999999999988 4469999999999999998875433 57999999987754 6
Q ss_pred cccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 131 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 131 tfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.||+|+++... ...+++++.++|+|||++++.+...
T Consensus 158 ~~D~v~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 158 IFHAAFVDVRE---PWHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp CBSEEEECSSC---GGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred cccEEEECCcC---HHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 79999996542 3577899999999999999998753
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-10 Score=116.24 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=79.5
Q ss_pred CCCeEEEECCCcchhHHHHHHh--C-CCeEEEEeCCHHHHHHHHHHhccC---CC--C----------------------
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA--G-FHGITNVDFSKVVISDMLRRNVRD---RS--D---------------------- 117 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~--G-~~~VtgIDiS~~~I~~a~~r~~~~---~~--~---------------------- 117 (759)
++.+|||+|||+|.++..++.. . ..+|+|+|+|+.+++.|+++.... .. .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999999876 2 236999999999999998776433 11 1
Q ss_pred ---cE-------------EEEeecccC-------C-CcccEEEeCCCC-----------hhHHHHHHHHHHHhcccCcEE
Q 004354 118 ---MR-------------WRVMDMTSM-------Q-GGLDALMEPELG-----------HKLGNQYLSEVKRLLKSGGKF 162 (759)
Q Consensus 118 ---i~-------------f~~~D~~~~-------~-gtfD~Ii~~~~~-----------~~~~~~~l~ei~rvLkpGG~l 162 (759)
++ |.++|+.+. . ..||+|+|+... ......+++++.++|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 56 999998774 2 389999996421 133678999999999999999
Q ss_pred EEEEcCc
Q 004354 163 VCLTLAE 169 (759)
Q Consensus 163 iiit~~~ 169 (759)
+++....
T Consensus 211 ~~~~~~~ 217 (250)
T 1o9g_A 211 AVTDRSR 217 (250)
T ss_dssp EEEESSS
T ss_pred EEeCcch
Confidence 9865443
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-10 Score=119.25 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=66.3
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc----CCCCcEEEE-eecccCCCcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR----DRSDMRWRV-MDMTSMQGGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~----~~~~i~f~~-~D~~~~~gtfD~Ii~~~~~~ 142 (759)
.+.+|||||||+|.++..|++.|..+|+|+|+|+.|++.++++... ...++.+.. .|+.. ..||.+.+.....
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v~~ 114 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVSFI 114 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCSSS
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEEhh
Confidence 4569999999999999999999877899999999999987664321 112333333 22222 1234433322111
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit 166 (759)
. ...++.+++|+|||||+++++.
T Consensus 115 ~-l~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 115 S-LDLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp C-GGGTHHHHHHHSCTTCEEEEEE
T ss_pred h-HHHHHHHHHHhccCCCEEEEEE
Confidence 1 2689999999999999999874
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.7e-09 Score=104.09 Aligned_cols=94 Identities=11% Similarity=0.096 Sum_probs=72.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--------------
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG---FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------- 129 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G---~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------- 129 (759)
.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+ ..++++++++|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~ 90 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN 90 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CCTTCEEEECCTTTTSSCCC----------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CCCCceEEEccccchhhhhhcccccccccc
Confidence 467899999999999999999873 2469999999921 2357899999997642
Q ss_pred --------------CcccEEEeCCCChh------H-------HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 130 --------------GGLDALMEPELGHK------L-------GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 130 --------------gtfD~Ii~~~~~~~------~-------~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
+.||+|+++...++ . ...+++++.++|+|||.+++..+..+
T Consensus 91 ~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 158 (201)
T 2plw_A 91 NNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS 158 (201)
T ss_dssp -CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred chhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC
Confidence 58999999653221 1 23588999999999999999777643
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=119.66 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=74.7
Q ss_pred CCCeEEEECCC------cchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---------C
Q 004354 68 PPPQILVPGCG------NSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---------G 130 (759)
Q Consensus 68 ~~~~ILDlGCG------~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---------g 130 (759)
+..+||||||| +|..+..+++. ...+|+|+|+|+.+. ...++++|+++|+.+++ +
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VDELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hcCCCcEEEEecccccchhhhhhcccC
Confidence 56899999999 77777777664 224699999999762 13468999999998853 7
Q ss_pred cccEEEeCCCChh-HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 131 GLDALMEPELGHK-LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 131 tfD~Ii~~~~~~~-~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+||+|++....+. ....+|+++.++|||||+|++.++..
T Consensus 288 sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 288 PFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred CccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 8999999754332 37889999999999999999987643
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.4e-10 Score=117.81 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=71.2
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEE-EEeecccC-----C-CcccEEEeCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW-RVMDMTSM-----Q-GGLDALMEPEL 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f-~~~D~~~~-----~-gtfD~Ii~~~~ 140 (759)
++.+|||+|||||.++..|++.|..+|+|+|+|+.|++.+.++. +++.. ...|+..+ + .+||+|++...
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~----~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~s 160 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD----DRVRSMEQYNFRYAEPVDFTEGLPSFASIDVS 160 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC----TTEEEECSCCGGGCCGGGCTTCCCSEEEECCS
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cccceecccCceecchhhCCCCCCCEEEEEee
Confidence 56799999999999999999998878999999999998754422 23222 12333332 2 34999998665
Q ss_pred ChhHHHHHHHHHHHhcccCcEEEEE
Q 004354 141 GHKLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 141 ~~~~~~~~l~ei~rvLkpGG~liii 165 (759)
.++ ...++.+++|+|+|||+++++
T Consensus 161 f~s-l~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 161 FIS-LNLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp SSC-GGGTHHHHHHHSCTTCEEEEE
T ss_pred Hhh-HHHHHHHHHHHcCcCCEEEEE
Confidence 443 478999999999999999998
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=116.99 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhc-----cCCCCcEEEEeecccCC-----CcccEEE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQ-----GGLDALM 136 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~-----~~~~~i~f~~~D~~~~~-----gtfD~Ii 136 (759)
++.+|||||||+|.++..+++. +..+|+++|+|+.+++.+++++. ...++++++++|+.+.. ++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 5679999999999999999876 34579999999999999988762 12467999999987642 7899999
Q ss_pred eCCCChhH------HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 137 EPELGHKL------GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 137 ~~~~~~~~------~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++...+.. ...+++++.++|+|||++++....
T Consensus 175 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 175 IDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp EECC---------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 96533321 168999999999999999987643
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-09 Score=110.19 Aligned_cols=107 Identities=15% Similarity=0.241 Sum_probs=87.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
..+.+||.||.|+|.++..+...+| ..+|++||+++.+++.|++++ |+ .++++++.+|+.+++.....
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~~~~~~~------ 139 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA--EHKIDLRLKPALETLDELLA------ 139 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHH------
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CCeEEEEEcCHHHHHHHHHh------
Confidence 3557999999999999999998877 679999999999999999998 54 46899999999998876541
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
.....+||+|++|.... ....+++.+.+.|+|||++++.
T Consensus 140 ---------------------~~~~~~~D~v~~d~~~~-------------~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 140 ---------------------AGEAGTFDVAVVDADKE-------------NCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp ---------------------TTCTTCEEEEEECSCST-------------THHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------cCCCCCccEEEECCCHH-------------HHHHHHHHHHHHcCCCeEEEEE
Confidence 00015799999976422 1267999999999999999884
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=114.41 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=81.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc-----------CCCCcEEEEeecccC---CCccc
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-----------DRSDMRWRVMDMTSM---QGGLD 133 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~-----------~~~~i~f~~~D~~~~---~gtfD 133 (759)
.+.+|||||||+|.++..+++.+..+|+++|+++.+++.|++++.. ..++++++++|+.+. .++||
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~fD 154 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD 154 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCee
Confidence 4579999999999999999887666899999999999999988611 246799999998664 37899
Q ss_pred EEEeCCCChh----H--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 134 ALMEPELGHK----L--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 134 ~Ii~~~~~~~----~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+|++....+. . ...+++++.++|+|||++++.+.
T Consensus 155 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 155 VIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp EEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 9998653221 1 37889999999999999998753
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.4e-10 Score=112.18 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC-C---CcccEEEeCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q---GGLDALMEPE 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~-~---gtfD~Ii~~~ 139 (759)
+..+|||+|||+|..+..+++.. ..+|+++|+|+.+++.++++..... .+++++++|+.+. + + ||+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 46799999999999999998762 2469999999999999988764322 3589999998654 2 6 99999864
Q ss_pred CChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 140 LGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 140 ~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
. ......+++++.++|+|||++++..
T Consensus 135 ~-~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 D-VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T-TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred C-hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 3 2236789999999999999998754
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-10 Score=117.65 Aligned_cols=112 Identities=10% Similarity=-0.001 Sum_probs=86.5
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~ 127 (759)
.....+..++.. .+..+|||+|||+|..+..|++.- ..+|+++|+|+.+++.+++++...+ .+++++++|+.+
T Consensus 47 ~~~~~l~~l~~~---~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~ 123 (242)
T 3r3h_A 47 EQAQFMQMLIRL---TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALD 123 (242)
T ss_dssp HHHHHHHHHHHH---HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHhh---cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 334444444432 356799999999999999999851 2369999999999999988875443 479999999865
Q ss_pred C---------CCcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 128 M---------QGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 128 ~---------~gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
. .++||+|++... ......+++++.++|+|||++++-..
T Consensus 124 ~l~~~~~~~~~~~fD~V~~d~~-~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 124 TLHSLLNEGGEHQFDFIFIDAD-KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp HHHHHHHHHCSSCEEEEEEESC-GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred HHHHHhhccCCCCEeEEEEcCC-hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 4 268999999764 33467799999999999999998643
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-09 Score=119.11 Aligned_cols=119 Identities=18% Similarity=0.107 Sum_probs=91.3
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-C--CcEEEE
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-S--DMRWRV 122 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~--~i~f~~ 122 (759)
+|.+....+..+..++ .++.+|||+|||+|.++..++..|..+|+++|+|+.+++.|++++...+ . +++|++
T Consensus 195 ff~~~~~~~~~~~~~~-----~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~ 269 (385)
T 2b78_A 195 IFLDQRQVRNELINGS-----AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 269 (385)
T ss_dssp SCGGGHHHHHHHHHTT-----TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE
T ss_pred cCCcHHHHHHHHHHHh-----cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence 3444344445555553 2567999999999999999998888789999999999999999875543 2 799999
Q ss_pred eecccCC-------CcccEEEeCCCCh-----------hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 123 MDMTSMQ-------GGLDALMEPELGH-----------KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 123 ~D~~~~~-------gtfD~Ii~~~~~~-----------~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+|+.+.. .+||+|+++.... .....++..+.++|+|||.+++.+...
T Consensus 270 ~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 270 MDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9987642 4899999864221 115567888999999999999887653
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-09 Score=110.50 Aligned_cols=107 Identities=16% Similarity=0.275 Sum_probs=87.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+.+||.||.|.|..+..+...+| ..+|++||++|.+++.|++++ |+ .++++++.+|+.+++.....
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~l~~l~~------- 142 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV--AEKISLRLGPALATLEQLTQ------- 142 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHHHHHHT-------
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHh-------
Confidence 457999999999999999998887 579999999999999999987 65 46899999999998877541
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
......||+|++|.... .-..+++.+.+.|+|||++++.-
T Consensus 143 --------------------~~~~~~fD~V~~d~~~~-------------~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 143 --------------------GKPLPEFDLIFIDADKR-------------NYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp --------------------SSSCCCEEEEEECSCGG-------------GHHHHHHHHHHTEEEEEEEEEEC
T ss_pred --------------------cCCCCCcCEEEECCCHH-------------HHHHHHHHHHHHcCCCeEEEEeC
Confidence 00015799999986421 12679999999999999999864
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.96 E-value=8.4e-09 Score=111.96 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=100.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC------CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF------HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~------~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~ 138 (759)
.++.+|||+|||+|.++..+++... .+++|+|+++.+++.|+.+....+.++.+.++|..... +.||+|+++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 3567999999999999998887632 46999999999999998876544447899999987654 789999997
Q ss_pred CCChh--------------------HHHHHHHHHHHhcccCcEEEEEEcCc-------hhhhhhhccccCCCceEEEEEe
Q 004354 139 ELGHK--------------------LGNQYLSEVKRLLKSGGKFVCLTLAE-------SHVLGLLFPKFRFGWKMSVHAI 191 (759)
Q Consensus 139 ~~~~~--------------------~~~~~l~ei~rvLkpGG~liiit~~~-------~~~~~~l~~~~~~~w~v~~~~~ 191 (759)
..... ....++..+.+.|+|||++++++... ..+++.+.+. +|...+..+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~---~~~~~ii~l 285 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKN---GHIEGIIKL 285 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHH---EEEEEEEEC
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhC---CeEEEeeeC
Confidence 53110 01368999999999999999987221 1222222222 454444455
Q ss_pred CCCCCCCCCceEEEEEEEeCCC
Q 004354 192 PQKSSSEPSLQTFMVVADKENS 213 (759)
Q Consensus 192 ~~~~~~~~~~~~f~~v~~K~~~ 213 (759)
+...-.....+..+++++|.+.
T Consensus 286 p~~~F~~~~~~~~i~vl~k~~~ 307 (344)
T 2f8l_A 286 PETLFKSEQARKSILILEKADV 307 (344)
T ss_dssp CGGGSCC-CCCEEEEEEEECCT
T ss_pred ChhhccCCCCceEEEEEECCCC
Confidence 4322224456788888888664
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-09 Score=110.58 Aligned_cols=113 Identities=16% Similarity=0.070 Sum_probs=87.5
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecc
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~ 126 (759)
+.....+..++.. .++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.+++++...+ .++++.++|+.
T Consensus 46 ~~~~~~l~~l~~~---~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 122 (239)
T 2hnk_A 46 PEEGQFLNILTKI---SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSAL 122 (239)
T ss_dssp HHHHHHHHHHHHH---HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHHh---hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence 3444455555433 357899999999999999999873 3479999999999999998875433 24899999986
Q ss_pred cC-------------------C-CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 127 SM-------------------Q-GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 127 ~~-------------------~-gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+. . ++||+|++... ......+++++.++|+|||++++...
T Consensus 123 ~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~-~~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 123 ETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD-KENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp HHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC-GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred HHHHHHHhhcccccccccccCCCCCcCEEEEeCC-HHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 52 1 57999999754 23466899999999999999998753
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=119.05 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=79.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--CcccEEEeCCC---
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--GGLDALMEPEL--- 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--gtfD~Ii~~~~--- 140 (759)
++..|||||||+|.++..+++.|.++|+|||.|+ +++.|++.....+ ..++++++|++++. ..+|+|++...
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 4679999999999999999999998999999997 7788887665433 56999999998876 89999998431
Q ss_pred --ChhHHHHHHHHHHHhcccCcEEE
Q 004354 141 --GHKLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 141 --~~~~~~~~l~ei~rvLkpGG~li 163 (759)
.+.....++....|+|+|||.++
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred ccccchhhhHHHHHHhhCCCCceEC
Confidence 12237888999999999999876
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-09 Score=118.14 Aligned_cols=118 Identities=11% Similarity=0.069 Sum_probs=92.8
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCC---CcEEEE
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS---DMRWRV 122 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~---~i~f~~ 122 (759)
||......+..+..+ .++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.|++++...+. +++|++
T Consensus 204 ff~~~~~~~~~l~~~------~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~ 277 (396)
T 3c0k_A 204 YYLDQRDSRLATRRY------VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR 277 (396)
T ss_dssp SCGGGHHHHHHHHHH------CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred cCcCHHHHHHHHHHh------hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence 444444444455554 25679999999999999999998877899999999999999998765443 789999
Q ss_pred eecccCC-------CcccEEEeCCCCh-----------hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 123 MDMTSMQ-------GGLDALMEPELGH-----------KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 123 ~D~~~~~-------gtfD~Ii~~~~~~-----------~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+|+.+.. +.||+|+++.... .....++.++.++|+|||.+++.+...
T Consensus 278 ~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 278 DDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9987753 5899999975211 236789999999999999999887653
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-09 Score=110.53 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=85.8
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC------CeEEEEeCCHHHHHHHHHHhccC------CCCc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF------HGITNVDFSKVVISDMLRRNVRD------RSDM 118 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~------~~VtgIDiS~~~I~~a~~r~~~~------~~~i 118 (759)
.+...+.+.+.. ...++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.++++.... ..++
T Consensus 69 ~~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v 147 (227)
T 1r18_A 69 HMHAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL 147 (227)
T ss_dssp HHHHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHh-hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce
Confidence 344445555531 1256789999999999999999874 42 36999999999999998876442 3579
Q ss_pred EEEEeecccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 119 RWRVMDMTSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 119 ~f~~~D~~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++.++|+.+.. ++||+|++....++ +++++.++|+|||++++....
T Consensus 148 ~~~~~d~~~~~~~~~~fD~I~~~~~~~~----~~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 148 LIVEGDGRKGYPPNAPYNAIHVGAAAPD----TPTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEESCGGGCCGGGCSEEEEEECSCBSS----CCHHHHHTEEEEEEEEEEESC
T ss_pred EEEECCcccCCCcCCCccEEEECCchHH----HHHHHHHHhcCCCEEEEEEec
Confidence 99999998732 68999999775543 347889999999999988753
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-09 Score=119.64 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=85.6
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeecccCC-------CcccEEEeC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQ-------GGLDALMEP 138 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~--~i~f~~~D~~~~~-------gtfD~Ii~~ 138 (759)
++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.+++++...+. +++|+++|+.+.. ++||+|+++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 5789999999999999999998887899999999999999988765443 7899999987653 589999996
Q ss_pred CCCh-----------hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 139 ELGH-----------KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 139 ~~~~-----------~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.... .....++.++.++|+|||.+++.+...
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 5221 226788999999999999999998754
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=114.33 Aligned_cols=101 Identities=21% Similarity=0.213 Sum_probs=82.5
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccC----CCcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM----QGGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~----~gtfD~Ii~ 137 (759)
.+.+|||||||+|.++..+++. +..+|+++|+++.+++.+++++.. ..++++++++|+.+. .++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 4679999999999999999887 566899999999999999987632 246899999998764 278999999
Q ss_pred CCCChhH------HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 138 PELGHKL------GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 138 ~~~~~~~------~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+...+.. ...+++++.++|+|||++++.+..
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 6533211 368999999999999999988543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-09 Score=108.10 Aligned_cols=112 Identities=9% Similarity=0.154 Sum_probs=85.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+.+||.||.|+|.++.++...++ ..+|++||++|.+++.|++++ |+ .++++++.+|+.+++.....
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~l~~~~~------- 128 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL--QDKVTILNGASQDLIPQLKK------- 128 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHGGGTTT-------
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC--CCceEEEECCHHHHHHHHHH-------
Confidence 567999999999999999998765 679999999999999999987 55 56899999999998766431
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
+.....||+|++|..... ..-..++++.+ +.|+|||+|++.-+..
T Consensus 129 --------------------~~~~~~fD~V~~d~~~~~----------~~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 129 --------------------KYDVDTLDMVFLDHWKDR----------YLPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp --------------------TSCCCCCSEEEECSCGGG----------HHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred --------------------hcCCCceEEEEEcCCccc----------chHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 011257999999753221 00123567777 9999999999864443
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-09 Score=113.88 Aligned_cols=110 Identities=16% Similarity=0.045 Sum_probs=86.9
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC---
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--- 129 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--- 129 (759)
.+...+.. .++.+|||+|||+|..+..+++. +...|+++|+|+.+++.++++....+ .+++++++|+.++.
T Consensus 74 l~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~ 150 (274)
T 3ajd_A 74 IPPIVLNP---REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYL 150 (274)
T ss_dssp HHHHHHCC---CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH
T ss_pred HHHHHhCC---CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhh
Confidence 34445543 57789999999999999999884 43579999999999999988875543 47999999987652
Q ss_pred ----CcccEEEeCCCC------h--------------hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 ----GGLDALMEPELG------H--------------KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 ----gtfD~Ii~~~~~------~--------------~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+.||+|+++... . .....+++++.++|||||++++.+.+
T Consensus 151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 689999985211 0 12478999999999999999998864
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.2e-09 Score=114.10 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=84.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-gtfD~Ii~~~~~~ 142 (759)
.+..+|||||||+|.++..+++... .+++++|+ +.+++.++++..... .+++++.+|+.+.+ ..+|+|++....+
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh 267 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILY 267 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGG
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhc
Confidence 5678999999999999999998732 36999999 999999998875432 35999999998876 4459999977554
Q ss_pred h----HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 143 K----LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 143 ~----~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
. ....+++++.++|+|||+++++++..
T Consensus 268 ~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~ 298 (359)
T 1x19_A 268 SANEQLSTIMCKKAFDAMRSGGRLLILDMVI 298 (359)
T ss_dssp GSCHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 3 27889999999999999999887643
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-09 Score=107.81 Aligned_cols=160 Identities=10% Similarity=0.071 Sum_probs=92.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.+|+|+|.++..+....|..++++||+++.+++.|++.+..... +++++.+|+.+.+.....
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~---------- 97 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAE---------- 97 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHH----------
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhh----------
Confidence 456799999999999999999998888999999999999999998854322 799999999997665210
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC-----------------hHHHHHHHHHccCcC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----------------EGSFLLTVKDALSEQ 670 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~-----------------~~~fl~~~~~~L~~~ 670 (759)
...+||+|+.|.--... ..+...+.... -..+++.+++.|+||
T Consensus 98 -------------------~~~~fD~i~~npp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 157 (215)
T 4dzr_A 98 -------------------RGRPWHAIVSNPPYIPT-GEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARG 157 (215)
T ss_dssp -------------------TTCCBSEEEECCCCCC-------------------------CTTHHHHHHHTCCGGGBCSS
T ss_pred -------------------ccCcccEEEECCCCCCC-ccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCC
Confidence 12579999996311000 00000001110 078899999999999
Q ss_pred cE-EEEEecCCChhHHHHHHHHHHHhcCceEEEeecCCccEEEEEecCC
Q 004354 671 GL-FIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 718 (759)
Q Consensus 671 Gi-lv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~ 718 (759)
|. +++.+..........++..+..-|..+.......+...++++.+..
T Consensus 158 G~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~~ 206 (215)
T 4dzr_A 158 RAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTREP 206 (215)
T ss_dssp SEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEECC
T ss_pred CeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEcC
Confidence 99 7766644443333333332345576666666555667788887654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-09 Score=116.82 Aligned_cols=98 Identities=9% Similarity=0.099 Sum_probs=83.2
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCCCcccEEEeCCCChhHH
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQGGLDALMEPELGHKLG 145 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~gtfD~Ii~~~~~~~~~ 145 (759)
++.+|||+|||+|.++.. +. +..+|+|+|+|+.+++.+++++...+ .+++++++|+.+..+.||+|+++... ..
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~--~~ 270 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK--FA 270 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT--TG
T ss_pred CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH--hH
Confidence 578999999999999999 77 56679999999999999999875544 47999999998876889999997432 23
Q ss_pred HHHHHHHHHhcccCcEEEEEEcCc
Q 004354 146 NQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 146 ~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
..++..+.++|+|||.+++.++..
T Consensus 271 ~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 271 HKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp GGGHHHHHHHEEEEEEEEEEEEES
T ss_pred HHHHHHHHHHcCCCCEEEEEEeec
Confidence 478999999999999999988765
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-09 Score=114.92 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=80.7
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccCC----CcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQ----GGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~~----gtfD~Ii~ 137 (759)
.+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++.. ..++++++++|+.+.. ++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 4579999999999999999887 456899999999999999887632 2468999999986632 78999998
Q ss_pred CCCChhH-------HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 138 PELGHKL-------GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 138 ~~~~~~~-------~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+...++. ...+++++.++|+|||++++.+..
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 5432211 278999999999999999997543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.6e-09 Score=113.21 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=83.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~-gtfD~Ii~~~~~~ 142 (759)
.+..+|||+|||+|.++..+++... .+++++|+ +.+++.++++..... .+++|..+|+.+.. ..||+|++....|
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh 246 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLH 246 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGG
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhc
Confidence 4467999999999999999988632 36999999 999999988875433 57999999997322 5899999987655
Q ss_pred hH----HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 143 KL----GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 143 ~~----~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.. ..+++++++++|+|||++++.+..
T Consensus 247 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 247 DWDDLSAVAILRRCAEAAGSGGVVLVIEAV 276 (332)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 32 588999999999999999998764
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.2e-09 Score=106.37 Aligned_cols=133 Identities=14% Similarity=0.154 Sum_probs=98.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
....||.||+|+|.++..+....|...|++||+++.+++.|++...-..-++++++.+|+.+++...-
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~------------ 101 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMI------------ 101 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHS------------
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHc------------
Confidence 45789999999999999999999999999999999999999988621112469999999999877532
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHH
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 688 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v 688 (759)
.+..||.|++..-.+.+ ........++..+|++.+.+.|+|||+|++-. ....+.+.+
T Consensus 102 ------------------~~~~~d~v~~~~~~p~~--~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t--d~~~~~~~~ 159 (218)
T 3dxy_A 102 ------------------PDNSLRMVQLFFPDPWH--KARHNKRRIVQVPFAELVKSKLQLGGVFHMAT--DWEPYAEHM 159 (218)
T ss_dssp ------------------CTTCEEEEEEESCCCCC--SGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE--SCHHHHHHH
T ss_pred ------------------CCCChheEEEeCCCCcc--chhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe--CCHHHHHHH
Confidence 13679999984322211 11111234566789999999999999998654 455555555
Q ss_pred HHHHHHh
Q 004354 689 ISRMKMV 695 (759)
Q Consensus 689 ~~~l~~v 695 (759)
...+...
T Consensus 160 ~~~~~~~ 166 (218)
T 3dxy_A 160 LEVMSSI 166 (218)
T ss_dssp HHHHHTS
T ss_pred HHHHHhC
Confidence 6666544
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-09 Score=117.40 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=80.3
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccC----C-CcccEEE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM----Q-GGLDALM 136 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~----~-gtfD~Ii 136 (759)
.+.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++.. ..++++++++|+.+. . ++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 4679999999999999999876 345799999999999999987643 246899999998764 2 6899999
Q ss_pred eCCCChh-----H-HHHHHHHHHHhcccCcEEEEE
Q 004354 137 EPELGHK-----L-GNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 137 ~~~~~~~-----~-~~~~l~ei~rvLkpGG~liii 165 (759)
++...+. . ...+++++.++|+|||++++.
T Consensus 200 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 200 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 8643211 1 478999999999999999986
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-09 Score=116.45 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=82.4
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc------CCCCcEEEEeecccC----CCcccEEE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------DRSDMRWRVMDMTSM----QGGLDALM 136 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~------~~~~i~f~~~D~~~~----~gtfD~Ii 136 (759)
.+.+|||||||+|.++..+++. +..+|+++|+++.+++.+++++.. ..++++++++|+.+. .++||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 4579999999999999999886 356799999999999999987642 146899999998774 27899999
Q ss_pred eCCCChh---H------HHHHHHHHHHhcccCcEEEEEEc
Q 004354 137 EPELGHK---L------GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 137 ~~~~~~~---~------~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+....+. . ...+++++.++|+|||++++...
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 9654332 1 47899999999999999998753
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-09 Score=109.62 Aligned_cols=98 Identities=14% Similarity=0.024 Sum_probs=80.6
Q ss_pred CCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC----------CCccc
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM----------QGGLD 133 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~----------~gtfD 133 (759)
+..+|||+|||+|..+..+++. + ..+|+++|+|+.+++.+++++...+ .+++++++|+.+. .++||
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 5679999999999999999886 2 2469999999999999998875443 3589999998653 26799
Q ss_pred EEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 134 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 134 ~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+|++... ......+++.+.++|+|||++++-.
T Consensus 150 ~I~~d~~-~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 150 FGFVDAD-KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEECSC-GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCc-hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9998753 3346789999999999999998764
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-09 Score=114.07 Aligned_cols=111 Identities=14% Similarity=0.008 Sum_probs=86.9
Q ss_pred HHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC--
Q 004354 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~-- 129 (759)
..+...+.. .++.+|||+|||+|..+..+++.. ...|+++|+|+.+++.++++.... ..+++++++|+.+++
T Consensus 108 ~l~~~~l~~---~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~ 184 (315)
T 1ixk_A 108 MYPPVALDP---KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL 184 (315)
T ss_dssp HHHHHHHCC---CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG
T ss_pred HHHHHHhCC---CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccc
Confidence 334445543 577899999999999999999762 246999999999999999887543 347999999998865
Q ss_pred -CcccEEEeCCC------Chh------------------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 -GGLDALMEPEL------GHK------------------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 -gtfD~Ii~~~~------~~~------------------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+.||+|+++.. .+. ....+++++.++|||||++++.|..
T Consensus 185 ~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 185 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 68999998421 000 1268999999999999999998864
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.5e-09 Score=114.27 Aligned_cols=100 Identities=17% Similarity=0.095 Sum_probs=83.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc-CCCcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS-MQGGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~-~~gtfD~Ii~~~~~~ 142 (759)
.+..+|||||||+|.++..+++... .+++++|+ +.+++.++++..... .+++|+++|+.+ ++..||+|++....+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~ 259 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLL 259 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEecccc
Confidence 5678999999999999999998742 36999999 999999998875433 379999999976 335599999977654
Q ss_pred hH----HHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 KL----GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ~~----~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+. ...+++++.++|+|||++++.+.
T Consensus 260 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 260 NWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 32 45899999999999999999876
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-09 Score=115.28 Aligned_cols=101 Identities=15% Similarity=0.211 Sum_probs=81.9
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccC----CCcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM----QGGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~----~gtfD~Ii~ 137 (759)
.+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++.. ..++++++++|+.+. .++||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 4579999999999999999876 456799999999999999988643 146799999998764 278999998
Q ss_pred CCCCh----hH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 138 PELGH----KL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 138 ~~~~~----~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+...+ .. ...+++++.++|+|||++++....
T Consensus 196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 64221 11 278999999999999999987643
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-08 Score=112.38 Aligned_cols=101 Identities=14% Similarity=0.053 Sum_probs=83.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC-CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~ 142 (759)
.+..+|||+|||+|.++..+++... .+++++|+ +.+++.++++.... ..+++|..+|+.+.. ..||+|++....+
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh 279 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLH 279 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGG
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhc
Confidence 4678999999999999999998732 26999999 99999999887543 357999999998432 5899999987654
Q ss_pred hH----HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 143 KL----GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 143 ~~----~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.. ..+++++++++|+|||++++.+..
T Consensus 280 ~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 309 (369)
T 3gwz_A 280 DWDDDDVVRILRRIATAMKPDSRLLVIDNL 309 (369)
T ss_dssp GSCHHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 33 457999999999999999998754
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-09 Score=115.23 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=78.7
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccC-----CCCcEEEEeecccC----CCcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSM----QGGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~-----~~~i~f~~~D~~~~----~gtfD~Ii~ 137 (759)
.+.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++... .++++++++|+.+. .++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4579999999999999999876 3467999999999999999887432 46899999998764 278999998
Q ss_pred CCCChhH------HHHHHHHHHHhcccCcEEEEEE
Q 004354 138 PELGHKL------GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 138 ~~~~~~~------~~~~l~ei~rvLkpGG~liiit 166 (759)
+...+.. ...+++++.++|+|||++++..
T Consensus 188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 6532211 2789999999999999999875
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.3e-09 Score=125.69 Aligned_cols=117 Identities=16% Similarity=0.103 Sum_probs=93.2
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~---~~i~f~~ 122 (759)
||.+....+..+..+. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++++...+ .++++++
T Consensus 523 ~f~d~r~~r~~l~~~~------~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~ 596 (703)
T 3v97_A 523 LFLDHRIARRMLGQMS------KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQ 596 (703)
T ss_dssp CCGGGHHHHHHHHHHC------TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEE
T ss_pred CcccHHHHHHHHHHhc------CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEe
Confidence 4555555555565553 467999999999999999998888889999999999999999875543 3699999
Q ss_pred eecccCC----CcccEEEeCCCC-----------h--hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 123 MDMTSMQ----GGLDALMEPELG-----------H--KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 123 ~D~~~~~----gtfD~Ii~~~~~-----------~--~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+|+.+.. ++||+|+++... . .....++..+.++|+|||++++.+..
T Consensus 597 ~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 597 ADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp SCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 9998742 789999996521 1 12678899999999999999977654
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-09 Score=115.24 Aligned_cols=99 Identities=17% Similarity=0.269 Sum_probs=80.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccC----CCcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM----QGGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~----~gtfD~Ii~ 137 (759)
.+.+|||||||+|.++..+++.+ ..+|+++|+++.+++.+++++.. ..++++++++|+.+. .++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 45799999999999999998873 46799999999999999987643 257899999998763 278999998
Q ss_pred CCCChh------HHHHHHHHHHHhcccCcEEEEEE
Q 004354 138 PELGHK------LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 138 ~~~~~~------~~~~~l~ei~rvLkpGG~liiit 166 (759)
+...+. ....+++++.++|+|||++++..
T Consensus 175 d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp ECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 653321 13578999999999999999876
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-09 Score=112.91 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=81.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccC-----CCCcEEEEeecccCC----CcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSMQ----GGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~-----~~~i~f~~~D~~~~~----gtfD~Ii~ 137 (759)
.+.+|||+|||+|.++..+++.. ..+|+++|+++.+++.+++++... .++++++++|+.+.. ++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 45799999999999999998763 467999999999999999886432 468999999987642 78999999
Q ss_pred CCCChh----H--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 138 PELGHK----L--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 138 ~~~~~~----~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
....+. . ...+++.+.++|+|||++++.+.
T Consensus 158 d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 542221 1 27899999999999999998854
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.9e-09 Score=111.25 Aligned_cols=117 Identities=10% Similarity=0.070 Sum_probs=91.9
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEe
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVM 123 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~ 123 (759)
|+.....-+..+..++ .++.+|||+|||+|.++..++..|..+|+++|+||.+++.+++++...+ ..++++++
T Consensus 108 f~~~~~~er~ri~~~~-----~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~ 182 (278)
T 3k6r_A 108 FSPANVKERVRMAKVA-----KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 182 (278)
T ss_dssp CCGGGHHHHHHHHHHC-----CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred EcCCcHHHHHHHHHhc-----CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeC
Confidence 3444344445566665 3688999999999999999999887789999999999999998875543 45899999
Q ss_pred ecccCC--CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 124 DMTSMQ--GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 124 D~~~~~--gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
|+.++. +.||.|+++.... ...++..+.++|++||.+.+-.+..
T Consensus 183 D~~~~~~~~~~D~Vi~~~p~~--~~~~l~~a~~~lk~gG~ih~~~~~~ 228 (278)
T 3k6r_A 183 DNRDFPGENIADRILMGYVVR--THEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp CTTTCCCCSCEEEEEECCCSS--GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred cHHHhccccCCCEEEECCCCc--HHHHHHHHHHHcCCCCEEEEEeeec
Confidence 999887 8899999875322 2467778889999999987766543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-09 Score=112.36 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=80.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccCCCcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQGGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~ 142 (759)
.+.+|||||||+|.++..+++.+ .+|+++|+++.+++.|++++.. ..++++++.+|+.+..++||+|++.....
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~~dp 150 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQEPD 150 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESSCCC
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECCCCh
Confidence 45799999999999999998876 7899999999999988776532 24679999999877557899999975433
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
..+++.+.++|+|||.+++...
T Consensus 151 ---~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 151 ---IHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp ---HHHHHHHHTTEEEEEEEEEEEE
T ss_pred ---HHHHHHHHHhcCCCcEEEEEcC
Confidence 3489999999999999998653
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-09 Score=107.27 Aligned_cols=111 Identities=14% Similarity=0.034 Sum_probs=85.7
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~ 127 (759)
.....+..++.. .++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.+++++...+ .+++++++|+.+
T Consensus 56 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 132 (229)
T 2avd_A 56 EQAQLLANLARL---IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 132 (229)
T ss_dssp HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHHh---cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHH
Confidence 334444444432 356799999999999999998752 3479999999999999998875443 479999999865
Q ss_pred CC---------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 128 MQ---------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 128 ~~---------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.. ++||+|++... ......+++++.++|+|||.+++..
T Consensus 133 ~~~~~~~~~~~~~~D~v~~d~~-~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 133 TLDELLAAGEAGTFDVAVVDAD-KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp HHHHHHHTTCTTCEEEEEECSC-STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHhcCCCCCccEEEECCC-HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 41 47999999754 2335789999999999999998864
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.89 E-value=7.8e-09 Score=109.43 Aligned_cols=109 Identities=16% Similarity=0.204 Sum_probs=82.4
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~ 128 (759)
+.+...+...+.. .++.+|||+|||+|.++..|++.+. +|+|+|+|+.+++.++++..... ++++++++|+.+.
T Consensus 14 ~~i~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 14 PLIINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 89 (285)
T ss_dssp HHHHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence 3455556566544 5778999999999999999999866 69999999999999988874432 4799999999887
Q ss_pred C-CcccEEEeCCCChhH---HHHHHH--------------HH--HHhcccCcEEE
Q 004354 129 Q-GGLDALMEPELGHKL---GNQYLS--------------EV--KRLLKSGGKFV 163 (759)
Q Consensus 129 ~-gtfD~Ii~~~~~~~~---~~~~l~--------------ei--~rvLkpGG~li 163 (759)
+ ..||+|+++...++. ...++. ++ +++|+|||.++
T Consensus 90 ~~~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 90 DLPFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCCCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred cchhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 6 789999996544332 223332 22 36899999863
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-08 Score=99.47 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=73.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CC---------CeEEEEeCCHHHHHHHHHHhccCCCCcEEE-EeecccCC------
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GF---------HGITNVDFSKVVISDMLRRNVRDRSDMRWR-VMDMTSMQ------ 129 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~---------~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~-~~D~~~~~------ 129 (759)
.++.+|||+|||+|.++..+++. |. .+|+|+|+|+.+ ...+++++ ++|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------PLEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------cCCCCeEEEeccCCCHHHHHHHH
Confidence 46789999999999999999987 43 579999999831 12568899 89987642
Q ss_pred -----CcccEEEeCCC----ChhH---------HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 130 -----GGLDALMEPEL----GHKL---------GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 130 -----gtfD~Ii~~~~----~~~~---------~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
++||+|++... .++. ...+++++.++|+|||++++.++..+
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 149 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS 149 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 48999998542 2221 25889999999999999999988654
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-08 Score=102.62 Aligned_cols=126 Identities=13% Similarity=0.033 Sum_probs=91.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChhH
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHKL 144 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~~ 144 (759)
.+..+|||||||.|.++..+. +-..|+|+||++.+++.+++.....+.+..+.++|....+ ++||+++..-..|..
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~L 181 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPLL 181 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHHH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHHh
Confidence 457799999999999999877 4557999999999999999987766788999999988766 899999987543332
Q ss_pred ---HHHHHHHHHHhcccCcEEEEEE---cCch-----hhhhhhcccc--CCCceEEEEEeCCC
Q 004354 145 ---GNQYLSEVKRLLKSGGKFVCLT---LAES-----HVLGLLFPKF--RFGWKMSVHAIPQK 194 (759)
Q Consensus 145 ---~~~~l~ei~rvLkpGG~liiit---~~~~-----~~~~~l~~~~--~~~w~v~~~~~~~~ 194 (759)
.....-++...|+++|.++-.. .++. .....+++.. ...|.++-.+++++
T Consensus 182 E~q~~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~~nE 244 (253)
T 3frh_A 182 EREQAGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIGTE 244 (253)
T ss_dssp HHHSTTHHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEETTE
T ss_pred hhhchhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheecCce
Confidence 2223337788999999888775 2221 1112222222 33788888888773
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.9e-09 Score=107.63 Aligned_cols=103 Identities=17% Similarity=0.284 Sum_probs=86.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
.+.+||.||.|.|.++..|...+|..+|++||+++.+++.|++.+ |+ .++++++.+|+.+++....
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~--------- 122 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL--ESRIELLFGDALQLGEKLE--------- 122 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCGGGSHHHHT---------
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECCHHHHHHhcc---------
Confidence 457999999999999999999988889999999999999999987 54 4689999999988765542
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
....||+|++|.... .-..+++.+.+.|+|||++++.
T Consensus 123 ---------------------~~~~fD~I~~~~~~~-------------~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 123 ---------------------LYPLFDVLFIDAAKG-------------QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp ---------------------TSCCEEEEEEEGGGS-------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred ---------------------cCCCccEEEECCCHH-------------HHHHHHHHHHHHcCCCeEEEEE
Confidence 025799999976422 2268999999999999999986
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-09 Score=114.15 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=81.4
Q ss_pred CCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccC----C-CcccEEEeCCCC
Q 004354 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSM----Q-GGLDALMEPELG 141 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~----~-gtfD~Ii~~~~~ 141 (759)
..+|||||||+|.++..+++. ...+|++||+++.+++.+++++.. ..++++++++|+.++ + ++||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 359999999999999999984 223699999999999999988743 246899999998764 2 689999996422
Q ss_pred h-----hH-HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 142 H-----KL-GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 142 ~-----~~-~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+ .. ...++++++++|+|||+|++.....
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 1 11 3789999999999999999887643
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.5e-09 Score=112.66 Aligned_cols=101 Identities=11% Similarity=0.090 Sum_probs=83.1
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc-CCCcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS-MQGGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~-~~gtfD~Ii~~~~~~ 142 (759)
.+..+|||+|||+|.++..+++.+. ..++++|+ +.+++.++++..... .+++|+++|+.+ ++..||+|++....+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~ 260 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLL 260 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGG
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEccccc
Confidence 4678999999999999999998753 36999999 999999988875433 379999999976 335599999977554
Q ss_pred hH----HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 143 KL----GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 143 ~~----~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+. ...+++++.++|+|||++++.+..
T Consensus 261 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 261 NWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp GSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 32 468999999999999999998865
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.1e-09 Score=105.46 Aligned_cols=116 Identities=15% Similarity=0.274 Sum_probs=86.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+.+||.||.|.|.++..+...+| ..+|++||++|.+++.|++++ |+ +++++++.+|+.+++.......
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~~~~~~~~~----- 132 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL--ENKIFLKLGSALETLQVLIDSK----- 132 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHCS-----
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCEEEEECCHHHHHHHHHhhc-----
Confidence 457999999999999999999887 679999999999999999997 54 4579999999999876542100
Q ss_pred ccccccccccCCCCCCCCCCCCCC--CceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASN--ARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~--~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
. +......... ..||+|++|.... .-..+++.+.+.|+|||+|++..
T Consensus 133 ------------~-~~~~~~~f~~~~~~fD~I~~~~~~~-------------~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 133 ------------S-APSWASDFAFGPSSIDLFFLDADKE-------------NYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp ------------S-CCGGGTTTCCSTTCEEEEEECSCGG-------------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ------------c-cccccccccCCCCCcCEEEEeCCHH-------------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 0 0000001112 5799999974221 11578999999999999999865
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-08 Score=105.47 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=106.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC---C-CCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF---T-QDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl---~-~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.||.|+|.++..|....|..+|++||+++.+++.|++.+.. . ..++++++.+|..++.......
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~----- 109 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEA----- 109 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHT-----
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhh-----
Confidence 345699999999999999999999888999999999999999999753 2 2457999999998875432100
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcC-CCCCCCCCCCcCCC---------CCChHHHHHHHHHccCcCcEE
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV-DSPDSSSGMTCPAA---------DFVEGSFLLTVKDALSEQGLF 673 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~-~s~d~~~g~scPp~---------~f~~~~fl~~~~~~L~~~Gil 673 (759)
.....+||+|+.+. +.... +..+|.. ...-..+++.+.+.|+|||.|
T Consensus 110 ---------------------~~~~~~fD~Vv~nPPy~~~~--~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l 166 (260)
T 2ozv_A 110 ---------------------GLPDEHFHHVIMNPPYNDAG--DRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQL 166 (260)
T ss_dssp ---------------------TCCTTCEEEEEECCCC-----------------------CCHHHHHHHHHHHEEEEEEE
T ss_pred ---------------------ccCCCCcCEEEECCCCcCCC--CCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEE
Confidence 01136799999963 11100 0111110 011367999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHhcCceEEEee----cCCccEEEEEecC
Q 004354 674 IVNLVSRSQATKDMVISRMKMVFNHLFCLQL----EEDVNLVLFGLSS 717 (759)
Q Consensus 674 v~N~~~~~~~~~~~v~~~l~~vF~~v~~~~~----~~~~N~Vl~a~~~ 717 (759)
++-.. .. ....++..+++.|..+....+ ....+.+|+....
T Consensus 167 ~~~~~--~~-~~~~~~~~l~~~~~~~~i~~v~~~~~~~~~~~lv~~~k 211 (260)
T 2ozv_A 167 SLISR--PQ-SVAEIIAACGSRFGGLEITLIHPRPGEDAVRMLVTAIK 211 (260)
T ss_dssp EEEEC--GG-GHHHHHHHHTTTEEEEEEEEEESSTTSCCCEEEEEEEE
T ss_pred EEEEc--HH-HHHHHHHHHHhcCCceEEEEEcCCCCCCceEEEEEEEe
Confidence 88542 22 334567777776764433332 2346777776544
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.3e-09 Score=108.55 Aligned_cols=112 Identities=14% Similarity=0.023 Sum_probs=84.8
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~ 127 (759)
.....+..++.. .++.+|||+|||+|..+..+++.. -.+|+++|+|+.+++.++++....+ .+++++++|+.+
T Consensus 59 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 135 (232)
T 3cbg_A 59 EQAQFLGLLISL---TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA 135 (232)
T ss_dssp HHHHHHHHHHHH---HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred HHHHHHHHHHHh---cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 334444444332 356799999999999999998762 2369999999999999988764322 358999999754
Q ss_pred C-C--------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 128 M-Q--------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 128 ~-~--------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
. + ++||+|++... ......+++++.++|+|||++++...
T Consensus 136 ~l~~l~~~~~~~~fD~V~~d~~-~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 136 TLEQLTQGKPLPEFDLIFIDAD-KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp HHHHHHTSSSCCCEEEEEECSC-GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred HHHHHHhcCCCCCcCEEEECCC-HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 2 1 57999998754 33467899999999999999998654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-08 Score=97.78 Aligned_cols=126 Identities=11% Similarity=0.049 Sum_probs=91.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||.|.|.++..+...+|..++++||+++.+++.|++.+.-. ..+++ ++.+|+.+.+...
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~----------- 91 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV----------- 91 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC-----------
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc-----------
Confidence 3456999999999999999999888889999999999999999886221 23478 8889976543321
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHH
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 686 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~ 686 (759)
...||+|+++..- . ...+++.+.+.|+|||.++++...... ..
T Consensus 92 ---------------------~~~~D~i~~~~~~-----------~---~~~~l~~~~~~L~~gG~l~~~~~~~~~--~~ 134 (178)
T 3hm2_A 92 ---------------------PDNPDVIFIGGGL-----------T---APGVFAAAWKRLPVGGRLVANAVTVES--EQ 134 (178)
T ss_dssp ---------------------CSCCSEEEECC-T-----------T---CTTHHHHHHHTCCTTCEEEEEECSHHH--HH
T ss_pred ---------------------CCCCCEEEECCcc-----------c---HHHHHHHHHHhcCCCCEEEEEeecccc--HH
Confidence 1579999973211 0 167999999999999999988754422 23
Q ss_pred HHHHHHHHhcCceEEE
Q 004354 687 MVISRMKMVFNHLFCL 702 (759)
Q Consensus 687 ~v~~~l~~vF~~v~~~ 702 (759)
.+...+++....+..+
T Consensus 135 ~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 135 MLWALRKQFGGTISSF 150 (178)
T ss_dssp HHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHcCCeeEEE
Confidence 4455555554444433
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.6e-09 Score=113.24 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=80.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccc-CC----CcccEEEeCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS-MQ----GGLDALMEPEL 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~-~~----gtfD~Ii~~~~ 140 (759)
++.+|||+| |+|.++..++..+. .+|+++|+|+.+++.++++....+ .+++++++|+.+ ++ ++||+|+++..
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 568999999 99999999998876 579999999999999998875433 279999999988 54 58999999764
Q ss_pred Chh-HHHHHHHHHHHhcccCcEE-EEEEc
Q 004354 141 GHK-LGNQYLSEVKRLLKSGGKF-VCLTL 167 (759)
Q Consensus 141 ~~~-~~~~~l~ei~rvLkpGG~l-iiit~ 167 (759)
... ....+++++.++|+|||++ ++...
T Consensus 251 ~~~~~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 251 ETLEAIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp SSHHHHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CchHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence 322 2688999999999999954 44443
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.85 E-value=7.9e-09 Score=110.16 Aligned_cols=88 Identities=17% Similarity=0.225 Sum_probs=67.3
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~ 129 (759)
+.+...+...+.. .++.+|||+|||+|.++..|++.+. +|+|+|+|+.+++.++++.... .++++++++|+.+.+
T Consensus 28 ~~i~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~ 103 (299)
T 2h1r_A 28 PGILDKIIYAAKI---KSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV 103 (299)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC
T ss_pred HHHHHHHHHhcCC---CCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC
Confidence 4455556666654 5678999999999999999998854 6999999999999998886432 368999999999887
Q ss_pred -CcccEEEeCCCCh
Q 004354 130 -GGLDALMEPELGH 142 (759)
Q Consensus 130 -gtfD~Ii~~~~~~ 142 (759)
+.||+|+++...+
T Consensus 104 ~~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 104 FPKFDVCTANIPYK 117 (299)
T ss_dssp CCCCSEEEEECCGG
T ss_pred cccCCEEEEcCCcc
Confidence 8899999975443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.8e-09 Score=112.60 Aligned_cols=99 Identities=12% Similarity=0.154 Sum_probs=82.2
Q ss_pred CCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC----CcccEEEeCCCC
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ----GGLDALMEPELG 141 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~----gtfD~Ii~~~~~ 141 (759)
..+|||||||+|.++..+++... .+++++|+ +.+++.++++..... .+++|+.+|+.+.+ +.||+|++....
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 78999999999999999998732 36999999 889999988765432 46999999998753 679999997765
Q ss_pred hhH----HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 142 HKL----GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 142 ~~~----~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
|+. ...++++++++|+|||++++....
T Consensus 259 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 259 HYFDAREAREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp GGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 532 589999999999999999998753
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-09 Score=114.30 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=74.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc---CCCCcEEE--EeecccCC-CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR---DRSDMRWR--VMDMTSMQ-GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~---~~~~i~f~--~~D~~~~~-gtfD~Ii~~~~ 140 (759)
.++.+|||+|||+|.++..+++. ..|+|+|+|+ ++..++++... ...++.|+ ++|+++++ ++||+|+|...
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~~ 157 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDIG 157 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECCC
T ss_pred CCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECCC
Confidence 56789999999999999999988 3599999999 53322211100 11168999 99999887 88999999643
Q ss_pred ---ChhH---H--HHHHHHHHHhcccCc--EEEEEEcCc
Q 004354 141 ---GHKL---G--NQYLSEVKRLLKSGG--KFVCLTLAE 169 (759)
Q Consensus 141 ---~~~~---~--~~~l~ei~rvLkpGG--~liiit~~~ 169 (759)
..+. . ..+++++.++|+||| .|++..+.+
T Consensus 158 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~ 196 (276)
T 2wa2_A 158 ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNP 196 (276)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCC
Confidence 1111 1 147899999999999 999988773
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=8.5e-09 Score=114.51 Aligned_cols=147 Identities=18% Similarity=0.215 Sum_probs=101.5
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccc
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~ 127 (759)
...+...+.+.+.. .++.+|||+|||+|.++..+++. ...+++|+|+++.+++.| .+++++++|+.+
T Consensus 24 P~~l~~~~~~~~~~---~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------~~~~~~~~D~~~ 92 (421)
T 2ih2_A 24 PPEVVDFMVSLAEA---PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------PWAEGILADFLL 92 (421)
T ss_dssp CHHHHHHHHHHCCC---CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------TTEEEEESCGGG
T ss_pred CHHHHHHHHHhhcc---CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------CCCcEEeCChhh
Confidence 35566677777653 35679999999999999999875 345799999999887654 468999999988
Q ss_pred CC--CcccEEEeCCCC--------------hhH-----------------HHHHHHHHHHhcccCcEEEEEEcCc-----
Q 004354 128 MQ--GGLDALMEPELG--------------HKL-----------------GNQYLSEVKRLLKSGGKFVCLTLAE----- 169 (759)
Q Consensus 128 ~~--gtfD~Ii~~~~~--------------~~~-----------------~~~~l~ei~rvLkpGG~liiit~~~----- 169 (759)
.. +.||+|+++... ... ...+++.+.++|+|||+++++....
T Consensus 93 ~~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~ 172 (421)
T 2ih2_A 93 WEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLE 172 (421)
T ss_dssp CCCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCG
T ss_pred cCccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCc
Confidence 76 789999996310 111 1267899999999999999987532
Q ss_pred --hhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCC
Q 004354 170 --SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKEN 212 (759)
Q Consensus 170 --~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~ 212 (759)
..+++.+... ++ ..+..++ ..-.+......+++++|..
T Consensus 173 ~~~~lr~~l~~~---~~-~~i~~l~-~~F~~~~~~~~il~~~k~~ 212 (421)
T 2ih2_A 173 DFALLREFLARE---GK-TSVYYLG-EVFPQKKVSAVVIRFQKSG 212 (421)
T ss_dssp GGHHHHHHHHHH---SE-EEEEEEE-SCSTTCCCCEEEEEEESSS
T ss_pred cHHHHHHHHHhc---CC-eEEEECC-CCCCCCCccEEEEEEEeCC
Confidence 1223333222 44 4444443 1113455677788888754
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-08 Score=98.71 Aligned_cols=108 Identities=12% Similarity=0.045 Sum_probs=84.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|+|+|.++..+... +..+|++||+|+.+++.|++.+....-++++++.+|+.+++....
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~------------ 110 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT------------ 110 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC------------
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc------------
Confidence 4578999999999998876664 556899999999999999998722111579999999999976543
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC---ChHHHHHHHHH--ccCcCcEEEEEecCC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF---VEGSFLLTVKD--ALSEQGLFIVNLVSR 680 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f---~~~~fl~~~~~--~L~~~Gilv~N~~~~ 680 (759)
..+||+|++|. |-.. .-..++..+.+ .|+|||+|++....+
T Consensus 111 -------------------~~~fD~i~~~~------------p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 111 -------------------TSPVDLVLADP------------PYNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp -------------------SSCCSEEEECC------------CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred -------------------CCCccEEEECC------------CCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 26799999953 2221 13678899988 999999999987554
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.84 E-value=8.7e-09 Score=102.73 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=91.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..+....|..+|++||+++.+++.|++.+ |+ ++++++.+|+.+.+..
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~---------- 105 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA---RNVTLVEAFAPEGLDD---------- 105 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC---TTEEEEECCTTTTCTT----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeCChhhhhhc----------
Confidence 3457999999999999999999988889999999999999999886 54 5799999997654322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhH
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 684 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~ 684 (759)
...||+|+++.... .-..+++.+.+.|+|||.|++..... ..
T Consensus 106 -----------------------~~~~D~i~~~~~~~-------------~~~~~l~~~~~~LkpgG~l~~~~~~~--~~ 147 (204)
T 3e05_A 106 -----------------------LPDPDRVFIGGSGG-------------MLEEIIDAVDRRLKSEGVIVLNAVTL--DT 147 (204)
T ss_dssp -----------------------SCCCSEEEESCCTT-------------CHHHHHHHHHHHCCTTCEEEEEECBH--HH
T ss_pred -----------------------CCCCCEEEECCCCc-------------CHHHHHHHHHHhcCCCeEEEEEeccc--cc
Confidence 14699999954221 23689999999999999999986543 23
Q ss_pred HHHHHHHHHHh
Q 004354 685 KDMVISRMKMV 695 (759)
Q Consensus 685 ~~~v~~~l~~v 695 (759)
...+...+++.
T Consensus 148 ~~~~~~~l~~~ 158 (204)
T 3e05_A 148 LTKAVEFLEDH 158 (204)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 34455555554
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-08 Score=96.58 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=100.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||+|.|.++..+... ..++++||+++.+++.|++.+ ++ .+.|++++.+|+.+.+.
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 116 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNL-DNYDIRVVHSDLYENVK------------ 116 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTC-TTSCEEEEECSTTTTCT------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCC-CccceEEEECchhcccc------------
Confidence 4579999999999999988887 569999999999999999987 43 12269999999765321
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHH
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 685 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~ 685 (759)
..+||+|+++.--. ...-....+++.+.+.|+|||.+++...... ..
T Consensus 117 ----------------------~~~~D~v~~~~~~~---------~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~ 163 (194)
T 1dus_A 117 ----------------------DRKYNKIITNPPIR---------AGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ--GA 163 (194)
T ss_dssp ----------------------TSCEEEEEECCCST---------TCHHHHHHHHHHHHHHEEEEEEEEEEEESTH--HH
T ss_pred ----------------------cCCceEEEECCCcc---------cchhHHHHHHHHHHHHcCCCCEEEEEECCCC--Ch
Confidence 25799999842100 0001235799999999999999999886553 23
Q ss_pred HHHHHHHHHhcCceEEEeecCCccEEEEEe
Q 004354 686 DMVISRMKMVFNHLFCLQLEEDVNLVLFGL 715 (759)
Q Consensus 686 ~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~ 715 (759)
..+.+.+++.|..+..+.. .....++++.
T Consensus 164 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~ 192 (194)
T 1dus_A 164 KSLAKYMKDVFGNVETVTI-KGGYRVLKSK 192 (194)
T ss_dssp HHHHHHHHHHHSCCEEEEE-ETTEEEEEEE
T ss_pred HHHHHHHHHHhcceEEEec-CCcEEEEEEe
Confidence 4577888888988766653 3344555554
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-08 Score=110.04 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=81.1
Q ss_pred CeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC-CcccEEEeCCCChh--
Q 004354 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-GGLDALMEPELGHK-- 143 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~~-- 143 (759)
.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++.... ..+++++.+|+.+.. +.||+|++....|.
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~ 247 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLD 247 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCC
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCC
Confidence 899999999999999998873 236999999 99999998876432 357999999997633 77999999876542
Q ss_pred --HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 144 --LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 144 --~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
....++++++++|+|||++++....
T Consensus 248 ~~~~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 248 EAASLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 2569999999999999999998754
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-08 Score=100.70 Aligned_cols=129 Identities=17% Similarity=0.242 Sum_probs=93.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||+|+|.++..+....|..++++||+++.+++.|++.. |+ ++++++.+|+.++.....
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~--------- 108 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV---PNIKLLWVDGSDLTDYFE--------- 108 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---SSEEEEECCSSCGGGTSC---------
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC---CCEEEEeCCHHHHHhhcC---------
Confidence 457899999999999999999999899999999999999999886 44 579999999876321121
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHH
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 685 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~ 685 (759)
...||+|+++...+... ..-.+..+....+++.+.+.|+|||+|++.. ......
T Consensus 109 ----------------------~~~~D~i~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~ 162 (214)
T 1yzh_A 109 ----------------------DGEIDRLYLNFSDPWPK--KRHEKRRLTYKTFLDTFKRILPENGEIHFKT--DNRGLF 162 (214)
T ss_dssp ----------------------TTCCSEEEEESCCCCCS--GGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE--SCHHHH
T ss_pred ----------------------CCCCCEEEEECCCCccc--cchhhhccCCHHHHHHHHHHcCCCcEEEEEe--CCHHHH
Confidence 35799999964221100 0000112345789999999999999999864 334444
Q ss_pred HHHHHHHHHh
Q 004354 686 DMVISRMKMV 695 (759)
Q Consensus 686 ~~v~~~l~~v 695 (759)
..+++.+.+.
T Consensus 163 ~~~~~~~~~~ 172 (214)
T 1yzh_A 163 EYSLVSFSQY 172 (214)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
Confidence 5555555543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.81 E-value=3.7e-08 Score=99.43 Aligned_cols=132 Identities=11% Similarity=0.130 Sum_probs=94.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|.|.++..|....|..++++||+++.+++.|++...-..-++++++.+|+.++.....
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~------------ 105 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE------------ 105 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC------------
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC------------
Confidence 45789999999999999999999999999999999999999988621112469999999988533222
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHH
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 688 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v 688 (759)
...||.|++....+.... .--...+....+++.+.+.|+|||.|++-. ........+
T Consensus 106 -------------------~~~~d~v~~~~~~p~~~~--~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t--d~~~~~~~~ 162 (213)
T 2fca_A 106 -------------------PGEVKRVYLNFSDPWPKK--RHEKRRLTYSHFLKKYEEVMGKGGSIHFKT--DNRGLFEYS 162 (213)
T ss_dssp -------------------TTSCCEEEEESCCCCCSG--GGGGGSTTSHHHHHHHHHHHTTSCEEEEEE--SCHHHHHHH
T ss_pred -------------------cCCcCEEEEECCCCCcCc--cccccccCcHHHHHHHHHHcCCCCEEEEEe--CCHHHHHHH
Confidence 256999988432221100 000122456899999999999999999764 344445555
Q ss_pred HHHHHHh
Q 004354 689 ISRMKMV 695 (759)
Q Consensus 689 ~~~l~~v 695 (759)
+..+.+.
T Consensus 163 ~~~~~~~ 169 (213)
T 2fca_A 163 LKSFSEY 169 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
Confidence 6666554
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.80 E-value=4.3e-08 Score=110.19 Aligned_cols=162 Identities=13% Similarity=0.160 Sum_probs=110.1
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh--------------CCCeEEEEeCCHHHHHHHHHH
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------------GFHGITNVDFSKVVISDMLRR 110 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~--------------G~~~VtgIDiS~~~I~~a~~r 110 (759)
++|.+ ..+...+.+.+.. .++.+|||+|||+|.++..+++. ...+++|+|+++.+++.|+.+
T Consensus 152 ~fyTP-~~v~~~mv~~l~~---~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~n 227 (445)
T 2okc_A 152 QYFTP-RPLIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN 227 (445)
T ss_dssp GGCCC-HHHHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred cccCc-HHHHHHHHHHhCC---CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHH
Confidence 34433 4566677777754 56779999999999999888764 123599999999999998877
Q ss_pred hccCCC---CcEEEEeecccCC--CcccEEEeCCCChh-------------------HHHHHHHHHHHhcccCcEEEEEE
Q 004354 111 NVRDRS---DMRWRVMDMTSMQ--GGLDALMEPELGHK-------------------LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 111 ~~~~~~---~i~f~~~D~~~~~--gtfD~Ii~~~~~~~-------------------~~~~~l~ei~rvLkpGG~liiit 166 (759)
+...+. +.++.++|....+ +.||+|++++.... ....++..+.+.|+|||+++++.
T Consensus 228 l~l~g~~~~~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 228 LYLHGIGTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp HHHTTCCSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhCCCcCCCCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 643332 6789999988766 68999999752110 02478999999999999999887
Q ss_pred cCc--------hhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCC
Q 004354 167 LAE--------SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 213 (759)
Q Consensus 167 ~~~--------~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~ 213 (759)
... ..+++.+++.. +...+..++..--...+.+..+++++|.++
T Consensus 308 p~~~L~~~~~~~~iR~~L~~~~---~l~~ii~lp~~~F~~t~v~t~Il~~~k~~~ 359 (445)
T 2okc_A 308 PDNVLFEAGAGETIRKRLLQDF---NLHTILRLPTGIFYAQGVKANVLFFSKGQP 359 (445)
T ss_dssp EHHHHHCSTHHHHHHHHHHHHE---EEEEEEECCSSSSSSTTCCEEEEEEEESSC
T ss_pred CCcccccCcHHHHHHHHHHhcC---cEEEEEeCCCCCccCCCCCEEEEEEECCCC
Confidence 321 12333344332 222233333321124567889999998765
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-08 Score=105.27 Aligned_cols=101 Identities=18% Similarity=0.079 Sum_probs=78.2
Q ss_pred CCeEEEECCCc--chhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC---------Cccc-
Q 004354 69 PPQILVPGCGN--SRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---------GGLD- 133 (759)
Q Consensus 69 ~~~ILDlGCG~--G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~---------gtfD- 133 (759)
-.+|||||||+ +.++..++.. .-.+|+++|.|+.|++.+++++.... .+++|+++|+.++. ++||
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~ 158 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDL 158 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCc
Confidence 36899999997 4444545443 22469999999999999999875432 36899999998852 5577
Q ss_pred ----EEEeCCCChhH-----HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 134 ----ALMEPELGHKL-----GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 134 ----~Ii~~~~~~~~-----~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+|+++...|+. ...+++++.+.|+|||+|++.++..
T Consensus 159 ~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 159 TRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp TSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred CCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 67777766654 4689999999999999999998764
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-09 Score=113.08 Aligned_cols=99 Identities=12% Similarity=0.024 Sum_probs=73.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc---cCCCCcEEE--EeecccCC-CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV---RDRSDMRWR--VMDMTSMQ-GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~---~~~~~i~f~--~~D~~~~~-gtfD~Ii~~~~ 140 (759)
.++.+|||||||+|.++..+++. ..|+|+|+|+ ++..++++.. ....++.|+ ++|+++++ ++||+|+|...
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~~ 149 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDVG 149 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeCc
Confidence 56789999999999999999887 4599999999 4322211100 011168999 99999887 88999999643
Q ss_pred ---ChhH---H--HHHHHHHHHhcccCc--EEEEEEcC
Q 004354 141 ---GHKL---G--NQYLSEVKRLLKSGG--KFVCLTLA 168 (759)
Q Consensus 141 ---~~~~---~--~~~l~ei~rvLkpGG--~liiit~~ 168 (759)
..+. . ..++..+.++|+||| .|++-.+.
T Consensus 150 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 150 ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 1111 1 137899999999999 99998877
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-08 Score=104.60 Aligned_cols=126 Identities=13% Similarity=0.057 Sum_probs=95.1
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChhH
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHKL 144 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~~ 144 (759)
+..+|||||||+|-++..++.. +-..|+++|+++.+++.+++++...+...++.+.|..... +.||++++.-..+..
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~L 211 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPCL 211 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHHH
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHHh
Confidence 4679999999999999988776 4457999999999999999998777778899999986655 899999997755544
Q ss_pred ----HHHHHHHHHHhcccCcEEEEEEc---C--chhhhh---hhcccc--CCCceEEEEEeCCC
Q 004354 145 ----GNQYLSEVKRLLKSGGKFVCLTL---A--ESHVLG---LLFPKF--RFGWKMSVHAIPQK 194 (759)
Q Consensus 145 ----~~~~l~ei~rvLkpGG~liiit~---~--~~~~~~---~l~~~~--~~~w~v~~~~~~~~ 194 (759)
....+ ++...|+++|.++.... + .+.+.. ..++.. ..+|.++-.+++++
T Consensus 212 e~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~~nE 274 (281)
T 3lcv_B 212 ETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEIGNE 274 (281)
T ss_dssp HHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred hhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeeecCe
Confidence 23455 89999999999887754 2 122222 222221 23899888888774
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.79 E-value=9.2e-09 Score=106.27 Aligned_cols=114 Identities=11% Similarity=0.021 Sum_probs=77.6
Q ss_pred hhHHHHHHhhcCCCC--CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecc
Q 004354 52 QLRDPLISLIGAPTS--SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~--~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~ 126 (759)
.....+...+..... .++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++..... .+++++++|+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 126 (254)
T 2h00_A 47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK 126 (254)
T ss_dssp HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchh
Confidence 334444455543211 146799999999999999888762 2469999999999999998875443 24999999976
Q ss_pred cC-----C----CcccEEEeCCCChhH-----------------HHHHHHHHHHhcccCcEEEEE
Q 004354 127 SM-----Q----GGLDALMEPELGHKL-----------------GNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 127 ~~-----~----gtfD~Ii~~~~~~~~-----------------~~~~l~ei~rvLkpGG~liii 165 (759)
+. + ++||+|+++...+.. ...++.+++++|||||.+.++
T Consensus 127 ~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 127 TLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp CSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 52 2 379999997422111 234678889999999987655
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=9.9e-09 Score=113.12 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=83.3
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-------CcccEEEeCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-------GGLDALMEPE 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~-------gtfD~Ii~~~ 139 (759)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++...+ .+++|+++|+.+.. ++||+|+++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 4579999999999999999988 5579999999999999998875443 45999999987753 5899999965
Q ss_pred CCh-----------hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 140 LGH-----------KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 140 ~~~-----------~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
... .....++.++.++|+|||.+++.+...
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 210 226788999999999999999988653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-08 Score=103.47 Aligned_cols=108 Identities=10% Similarity=0.000 Sum_probs=81.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|+|.++..|.... ..++++||+++.+++.|+++..-. ..+++++.+|+.+.+....
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~------------ 125 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQ-THKVIPLKGLWEDVAPTLP------------ 125 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGC-SSEEEEEESCHHHHGGGSC------------
T ss_pred CCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHHhc-CCCeEEEecCHHHhhcccC------------
Confidence 45799999999999999986653 348999999999999999987432 3679999999988754432
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC-hHHHHHHHHHccCcCcEEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~-~~~fl~~~~~~L~~~Gilv~ 675 (759)
+..||+|++|.+.. . .+..+.. -..+++.+++.|+|||.|++
T Consensus 126 -------------------~~~fD~V~~d~~~~-~-----~~~~~~~~~~~~l~~~~r~LkpgG~l~~ 168 (236)
T 1zx0_A 126 -------------------DGHFDGILYDTYPL-S-----EETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp -------------------TTCEEEEEECCCCC-B-----GGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred -------------------CCceEEEEECCccc-c-----hhhhhhhhHHHHHHHHHHhcCCCeEEEE
Confidence 36799999975442 1 1111111 13579999999999999885
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-08 Score=109.35 Aligned_cols=98 Identities=11% Similarity=0.097 Sum_probs=75.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhc--cCCCCcEEEEeecc-cCCCcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDMT-SMQGGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~--~~~~~i~f~~~D~~-~~~gtfD~Ii~~~~~~ 142 (759)
.+..+|||||||+|.++..+++... ..++++|+++ ++. +++.. ....+++|+.+|+. ..+ .||+|++....|
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~--~~~~~~~~~~~~v~~~~~d~~~~~p-~~D~v~~~~vlh 258 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVA--RHRLDAPDVAGRWKVVEGDFLREVP-HADVHVLKRILH 258 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHT--TCCCCCGGGTTSEEEEECCTTTCCC-CCSEEEEESCGG
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhh--cccccccCCCCCeEEEecCCCCCCC-CCcEEEEehhcc
Confidence 5678999999999999999998743 2589999954 443 22221 12356999999995 344 899999987655
Q ss_pred hH----HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 143 KL----GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 143 ~~----~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+. ...++++++++|||||++++.+..
T Consensus 259 ~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 259 NWGDEDSVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp GSCHHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 33 469999999999999999998753
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-08 Score=97.52 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=84.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.+|.|.|.++..+... +..+|++||+++.+++.|++.+... ..++++++.+|+.+++....
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----------- 98 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT----------- 98 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC-----------
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc-----------
Confidence 4579999999999999888877 5679999999999999999987322 13579999999999876532
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCC-CCChHHHHHHHH--HccCcCcEEEEEecCCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA-DFVEGSFLLTVK--DALSEQGLFIVNLVSRS 681 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~-~f~~~~fl~~~~--~~L~~~Gilv~N~~~~~ 681 (759)
..||+|++|. |- .....++++.+. +.|+|||++++......
T Consensus 99 ---------------------~~fD~i~~~~------------~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 99 ---------------------GRFDLVFLDP------------PYAKETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp ---------------------SCEEEEEECC------------SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred ---------------------CCCCEEEECC------------CCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 4699999852 11 112367788887 89999999999876554
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.2e-08 Score=101.11 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=95.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.+|+|.|.++..+... .|..++++||++|.+++.|++.+ |+ .++++++.+|+.+. ..
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~---~~------- 159 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF--DDRVTIKLKDIYEG---IE------- 159 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC--TTTEEEECSCGGGC---CC-------
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC--CCceEEEECchhhc---cC-------
Confidence 45579999999999999998888 67889999999999999999987 65 56799999998743 11
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
...||+|++|... | ..+++.+.+.|+|||.+++...+ ..
T Consensus 160 ------------------------~~~~D~v~~~~~~---------~------~~~l~~~~~~L~~gG~l~~~~~~--~~ 198 (255)
T 3mb5_A 160 ------------------------EENVDHVILDLPQ---------P------ERVVEHAAKALKPGGFFVAYTPC--SN 198 (255)
T ss_dssp ------------------------CCSEEEEEECSSC---------G------GGGHHHHHHHEEEEEEEEEEESS--HH
T ss_pred ------------------------CCCcCEEEECCCC---------H------HHHHHHHHHHcCCCCEEEEEECC--HH
Confidence 2569999996421 1 46899999999999999987643 33
Q ss_pred HHHHHHHHHHHh---cCceEEE
Q 004354 684 TKDMVISRMKMV---FNHLFCL 702 (759)
Q Consensus 684 ~~~~v~~~l~~v---F~~v~~~ 702 (759)
....+.+.+++. |..+-.+
T Consensus 199 ~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 199 QVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp HHHHHHHHHHHTGGGBSCCEEE
T ss_pred HHHHHHHHHHHcCCCccccEEE
Confidence 344566777665 7765444
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.2e-08 Score=102.77 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=98.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.||+|+|.++..+....+. +|++||+++.+++.|++.+... ..++++++.+|+.++.....
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~----------- 116 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIP----------- 116 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSC-----------
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhc-----------
Confidence 4679999999999999999988655 9999999999999999987321 24689999999988754322
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCC-CCCCCCCCcCCCC---------CChHHHHHHHHHccCcCcEEEEEe
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDS-PDSSSGMTCPAAD---------FVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s-~d~~~g~scPp~~---------f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+||+|+.|.-- .....+..+|... ..-..+++.+.+.|+|||.|++-.
T Consensus 117 --------------------~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 117 --------------------KERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp --------------------TTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------------------cCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 3679999996311 0001122222111 012479999999999999999833
Q ss_pred cCCChhHHHHHHHHHHHh-cCce--EEEe--ecCCccEEEEEecC
Q 004354 678 VSRSQATKDMVISRMKMV-FNHL--FCLQ--LEEDVNLVLFGLSS 717 (759)
Q Consensus 678 ~~~~~~~~~~v~~~l~~v-F~~v--~~~~--~~~~~N~Vl~a~~~ 717 (759)
+... ...++..+++. |.-. ..+. .....+.+++....
T Consensus 177 --~~~~-~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k 218 (259)
T 3lpm_A 177 --RPER-LLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIK 218 (259)
T ss_dssp --CTTT-HHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEE
T ss_pred --cHHH-HHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEe
Confidence 2222 23456666653 3322 1121 12345677765443
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-08 Score=102.14 Aligned_cols=119 Identities=12% Similarity=0.152 Sum_probs=88.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||.|+|.++..|....|..+|++||+++.+++.|++.+ |+ ++++++.+|+.++.....
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~--------- 137 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL---ENTTFCHDRAETFGQRKD--------- 137 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEESCHHHHTTCTT---------
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCEEEEeccHHHhccccc---------
Confidence 457999999999999888888888889999999999999999875 55 359999999987631100
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHH
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 685 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~ 685 (759)
...+||+|+.+... --..+++.+.+.|+|||.|++-.........
T Consensus 138 ---------------------~~~~fD~V~~~~~~--------------~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~ 182 (240)
T 1xdz_A 138 ---------------------VRESYDIVTARAVA--------------RLSVLSELCLPLVKKNGLFVALKAASAEEEL 182 (240)
T ss_dssp ---------------------TTTCEEEEEEECCS--------------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHH
T ss_pred ---------------------ccCCccEEEEeccC--------------CHHHHHHHHHHhcCCCCEEEEEeCCCchHHH
Confidence 02579999986521 0268999999999999999886433333333
Q ss_pred HHHHHHHHH
Q 004354 686 DMVISRMKM 694 (759)
Q Consensus 686 ~~v~~~l~~ 694 (759)
..+...++.
T Consensus 183 ~~~~~~l~~ 191 (240)
T 1xdz_A 183 NAGKKAITT 191 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-08 Score=111.52 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=76.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-CcccEEEeCCCChhHH
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-GGLDALMEPELGHKLG 145 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~~~~ 145 (759)
.++.+|||+|||+|.++..|++.+. +|+|+|+|+.+++.|++++...+..++|+++|+.++. ..||+|+++.......
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~~fD~Vv~dPPr~g~~ 367 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLH 367 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCTTCSEEEECCCTTCSC
T ss_pred CCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCccCCCEEEEcCCccchH
Confidence 4678999999999999999998754 6999999999999999887543323999999998876 5899999976422222
Q ss_pred HHHHHHHHHhcccCcEEEEEE
Q 004354 146 NQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 146 ~~~l~ei~rvLkpGG~liiit 166 (759)
..+++.+. .|+|||.+++..
T Consensus 368 ~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 368 PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp HHHHHHHH-HHCCSEEEEEES
T ss_pred HHHHHHHH-hcCCCcEEEEEC
Confidence 34555554 489999877653
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.3e-08 Score=111.87 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=88.8
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-- 129 (759)
....+...+.. .++.+|||+|||+|..+..+++.+. ..|+++|+|+.+++.++++....+.++.++++|+.+..
T Consensus 234 ~s~~~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~ 310 (429)
T 1sqg_A 234 SAQGCMTWLAP---QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW 310 (429)
T ss_dssp HHHTHHHHHCC---CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHH
T ss_pred HHHHHHHHcCC---CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhh
Confidence 33444455543 5788999999999999999998743 47999999999999999987665557899999998764
Q ss_pred ---CcccEEEeCC----CCh--------------------hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 ---GGLDALMEPE----LGH--------------------KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 ---gtfD~Ii~~~----~~~--------------------~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+.||+|+++. ... .....+++++.++|||||++++.+.+
T Consensus 311 ~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 311 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred cccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 6899999632 100 01258899999999999999998854
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-08 Score=113.63 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=86.3
Q ss_pred HHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---
Q 004354 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--- 129 (759)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--- 129 (759)
..+...+.. .++.+|||+|||+|..+..+++. +-..|+++|+|+.+++.+++++...+..+.++++|+.++.
T Consensus 91 ~l~a~~L~~---~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~ 167 (464)
T 3m6w_A 91 QAVGVLLDP---KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF 167 (464)
T ss_dssp HHHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH
T ss_pred HHHHHhcCc---CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc
Confidence 344455544 57889999999999999999876 2236999999999999999887654333899999987764
Q ss_pred -CcccEEEeCCC----C--------h------------hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 -GGLDALMEPEL----G--------H------------KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 -gtfD~Ii~~~~----~--------~------------~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++||+|+++.. . . .....+++++.++|||||++++.|.+
T Consensus 168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 78999996321 0 0 01378999999999999999998764
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.9e-08 Score=102.01 Aligned_cols=102 Identities=11% Similarity=0.205 Sum_probs=78.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC--CCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~--p~~~i~~VEiDp~v~~vA~~~F-gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|+|.++..|.+.+ |+.+|++||++|.|++.|++.+ ......+++++.+|+.++ .
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~----~-------- 136 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI----A-------- 136 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC----C--------
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc----c--------
Confidence 345799999999999999888876 4569999999999999999986 222356899999996543 2
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC----hHHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV----EGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~----~~~fl~~~~~~L~~~Gilv~N 676 (759)
...||+|++-. .-+++ -..+|+.+++.|+|||+|++-
T Consensus 137 -----------------------~~~~d~v~~~~------------~l~~~~~~~~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 137 -----------------------IENASMVVLNF------------TLQFLEPSERQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp -----------------------CCSEEEEEEES------------CGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----------------------ccccccceeee------------eeeecCchhHhHHHHHHHHHcCCCcEEEEE
Confidence 24699998711 11222 135899999999999998874
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.72 E-value=8e-08 Score=97.34 Aligned_cols=156 Identities=11% Similarity=0.105 Sum_probs=100.1
Q ss_pred CCCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||+| +|.++..+.... ..+|++||+++.+++.|++.+....- +++++.+|+..+ ...
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~-~~~----------- 119 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGII-KGV----------- 119 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSS-TTT-----------
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhh-hhc-----------
Confidence 355799999999 999999888875 56999999999999999988732111 799999996422 111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCC-CCCCCCCcCCC-------C-CChHHHHHHHHHccCcCcEEEEEe
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSP-DSSSGMTCPAA-------D-FVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~-d~~~g~scPp~-------~-f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
...+||+|+.|.--. ........|.. . -.-..+++.+.+.|+|||.|++.+
T Consensus 120 --------------------~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (230)
T 3evz_A 120 --------------------VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL 179 (230)
T ss_dssp --------------------CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --------------------ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 136799999863110 00000000000 0 012789999999999999999876
Q ss_pred cCCChhHHHHHHHHHHHhcCceEEEeecC--CccEEEEEecCC
Q 004354 678 VSRSQATKDMVISRMKMVFNHLFCLQLEE--DVNLVLFGLSSE 718 (759)
Q Consensus 678 ~~~~~~~~~~v~~~l~~vF~~v~~~~~~~--~~N~Vl~a~~~~ 718 (759)
..+. .....+.+.+.+..-.+..++... ....++...+.+
T Consensus 180 ~~~~-~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~~~~ 221 (230)
T 3evz_A 180 PDKE-KLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFFKGI 221 (230)
T ss_dssp ESCH-HHHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEECCC
T ss_pred cccH-hHHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEeccc
Confidence 4432 344556777776644555555433 345555555443
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.5e-08 Score=104.02 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=100.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-------CCC-----CcEEEEEcCH--------------HHHHHHHhhcC-------
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC-------MPF-----VGIEAVELDL--------------TMLNLAEDYFG------- 574 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~-------~p~-----~~i~~VEiDp--------------~v~~vA~~~Fg------- 574 (759)
..+.+||.||.|+|.....+... .|. .++++||.+| .+.++|++.+.
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 45679999999999665554332 563 5899999998 34446666532
Q ss_pred ------CC-CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCC
Q 004354 575 ------FT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 647 (759)
Q Consensus 575 ------l~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~ 647 (759)
+. ...+++++.+|+.+.+..... .....||+|++|.+++..
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~----------------------------~~~~~~D~iflD~fsp~~---- 186 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDD----------------------------SLNQKVDAWFLDGFAPAK---- 186 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCG----------------------------GGTTCEEEEEECSSCTTT----
T ss_pred chhheeccCCceEEEEEECcHHHHHhhccc----------------------------ccCCeEEEEEECCCCccc----
Confidence 21 124688999999999877531 001379999999987632
Q ss_pred CcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHHHHHHHh-cCceEEEeecCCccEEEEEecCC
Q 004354 648 TCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLSSE 718 (759)
Q Consensus 648 scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~~~~ 718 (759)
.+.+.+.++|+.+.++|+|||+|+. ++.... +...|++. |. +...+-...-..++.+.+..
T Consensus 187 ---~p~lw~~~~l~~l~~~L~pGG~l~t--ysaa~~----vrr~L~~aGF~-v~~~~g~~~kr~m~~a~~~~ 248 (257)
T 2qy6_A 187 ---NPDMWTQNLFNAMARLARPGGTLAT--FTSAGF----VRRGLQEAGFT-MQKRKGFGRKREMLCGVMEQ 248 (257)
T ss_dssp ---CGGGCCHHHHHHHHHHEEEEEEEEE--SCCBHH----HHHHHHHHTEE-EEEECCSTTCCCEEEEEEC-
T ss_pred ---ChhhcCHHHHHHHHHHcCCCcEEEE--EeCCHH----HHHHHHHCCCE-EEeCCCCCCCCceEEEEecC
Confidence 4478899999999999999999993 454444 34445555 54 44444333445677776554
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.1e-08 Score=110.54 Aligned_cols=111 Identities=17% Similarity=0.168 Sum_probs=86.6
Q ss_pred HHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--
Q 004354 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~-- 129 (759)
..+...+.. .++.+|||+|||+|..+..++.. +...|+++|+|+.+++.++++....+ .+++++++|+.+.+
T Consensus 249 ~l~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~ 325 (450)
T 2yxl_A 249 AVASIVLDP---KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI 325 (450)
T ss_dssp HHHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS
T ss_pred HHHHHhcCC---CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh
Confidence 344455543 57789999999999999999885 22469999999999999988875543 47999999998764
Q ss_pred ---CcccEEEeCC----CCh--------h------------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 ---GGLDALMEPE----LGH--------K------------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 ---gtfD~Ii~~~----~~~--------~------------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+.||+|+++. ... + ....+++++.++|||||++++.|+.
T Consensus 326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 6799999632 100 0 0267899999999999999998875
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-08 Score=110.24 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=77.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCChhH-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHKL- 144 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~~~- 144 (759)
.+..+|||||||+|.++..+++.+. ..++++|+ +.+++.+++ .++++++.+|+.+....||+|++....|+.
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~ 281 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP-----LSGIEHVGGDMFASVPQGDAMILKAVCHNWS 281 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----CTTEEEEECCTTTCCCCEEEEEEESSGGGSC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh-----cCCCEEEeCCcccCCCCCCEEEEecccccCC
Confidence 4568999999999999999998853 25888999 888865532 357999999997732449999998765533
Q ss_pred ---HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 145 ---GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 145 ---~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
...++++++++|+|||++++.++.
T Consensus 282 d~~~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 282 DEKCIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 449999999999999999998753
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.2e-08 Score=99.54 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=91.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC------CCCCCCeEEEEccHHHHHHhhcccCcc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG------FTQDKSLKVHITDGIKFVREMKSSSAT 601 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg------l~~~~rl~v~i~Da~~~l~~~~~~~~~ 601 (759)
....+||.||+|.|.++..|...+|...+++||+++.+++.|++... ....++++++.+|+.+++...-
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~----- 119 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF----- 119 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHC-----
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhC-----
Confidence 35578999999999999999999999999999999999999986531 0123579999999987655321
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 602 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
....||.|++....+.... .-.-..+....+|+.+.+.|+|||.|++.. ..
T Consensus 120 -------------------------~~~~~D~v~~~~~dp~~k~--~h~krr~~~~~~l~~~~~~LkpGG~l~~~t--d~ 170 (235)
T 3ckk_A 120 -------------------------YKGQLTKMFFLFPDPHFKR--TKHKWRIISPTLLAEYAYVLRVGGLVYTIT--DV 170 (235)
T ss_dssp -------------------------CTTCEEEEEEESCC-------------CCCHHHHHHHHHHEEEEEEEEEEE--SC
T ss_pred -------------------------CCcCeeEEEEeCCCchhhh--hhhhhhhhhHHHHHHHHHHCCCCCEEEEEe--CC
Confidence 1357999988432211000 000122455789999999999999999765 33
Q ss_pred hhHHHHHHHHHHH
Q 004354 682 QATKDMVISRMKM 694 (759)
Q Consensus 682 ~~~~~~v~~~l~~ 694 (759)
..+...+++.+..
T Consensus 171 ~~~~~~~~~~l~~ 183 (235)
T 3ckk_A 171 LELHDWMCTHFEE 183 (235)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 4444444555544
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=99.71 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=98.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+|.|.|..+..|...+++ .+|++||+++.+++.|++.+ |+ ++++++.+|+.++......
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~~~~------- 152 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV---LNTIIINADMRKYKDYLLK------- 152 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCHHHHHHHHHH-------
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC---CcEEEEeCChHhcchhhhh-------
Confidence 4569999999999999999998776 79999999999999999886 54 3799999999988653210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCC----------CCCChHHHHHHHHHccCcCcEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA----------ADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp----------~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
....||+|++|+..+. .|+.-.. ..-....+|+.+.+.|+|||.|+
T Consensus 153 ----------------------~~~~fD~Vl~d~Pcs~--~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv 208 (274)
T 3ajd_A 153 ----------------------NEIFFDKILLDAPCSG--NIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELV 208 (274)
T ss_dssp ----------------------TTCCEEEEEEEECCC--------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEE
T ss_pred ----------------------ccccCCEEEEcCCCCC--CcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 0257999999874321 1110000 00134789999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHhcCceE
Q 004354 675 VNLVSRSQATKDMVISRMKMVFNHLF 700 (759)
Q Consensus 675 ~N~~~~~~~~~~~v~~~l~~vF~~v~ 700 (759)
+...+......+.++..+.+-++..-
T Consensus 209 ~stcs~~~~ene~~v~~~l~~~~~~~ 234 (274)
T 3ajd_A 209 YSTCSMEVEENEEVIKYILQKRNDVE 234 (274)
T ss_dssp EEESCCCTTSSHHHHHHHHHHCSSEE
T ss_pred EEECCCChHHhHHHHHHHHHhCCCcE
Confidence 98755544433556666655555443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.2e-08 Score=108.84 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCChhH-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHKL- 144 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~~~- 144 (759)
.+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ .++++|+.+|+.+....||+|++....|+.
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~ 260 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-----SNNLTYVGGDMFTSIPNADAVLLKYILHNWT 260 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----BTTEEEEECCTTTCCCCCSEEEEESCGGGSC
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc-----CCCcEEEeccccCCCCCccEEEeehhhccCC
Confidence 356799999999999999999872 236999999 988876543 256999999997622459999998765532
Q ss_pred ---HHHHHHHHHHhccc---CcEEEEEEcC
Q 004354 145 ---GNQYLSEVKRLLKS---GGKFVCLTLA 168 (759)
Q Consensus 145 ---~~~~l~ei~rvLkp---GG~liiit~~ 168 (759)
...++++++++|+| ||++++....
T Consensus 261 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 290 (352)
T 1fp2_A 261 DKDCLRILKKCKEAVTNDGKRGKVTIIDMV 290 (352)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence 44999999999999 9999998754
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-07 Score=93.88 Aligned_cols=120 Identities=9% Similarity=0.009 Sum_probs=90.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|+|.++..+... ..+|++||+++.+++.|++.. |+ .++++++.+|+.+.+..
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~~~~---------- 119 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGL--SPRMRAVQGTAPAALAD---------- 119 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCTTGGGTT----------
T ss_pred CCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCC--CCCEEEEeCchhhhccc----------
Confidence 34578999999999999988887 569999999999999999885 55 34799999998775332
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhH
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 684 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~ 684 (759)
...||+|+++. . + +.++++.+.+.|+|||.|++..... ..
T Consensus 120 -----------------------~~~~D~v~~~~--~-----~--------~~~~l~~~~~~LkpgG~lv~~~~~~--~~ 159 (204)
T 3njr_A 120 -----------------------LPLPEAVFIGG--G-----G--------SQALYDRLWEWLAPGTRIVANAVTL--ES 159 (204)
T ss_dssp -----------------------SCCCSEEEECS--C-----C--------CHHHHHHHHHHSCTTCEEEEEECSH--HH
T ss_pred -----------------------CCCCCEEEECC--c-----c--------cHHHHHHHHHhcCCCcEEEEEecCc--cc
Confidence 14699999853 1 1 1339999999999999999987543 33
Q ss_pred HHHHHHHHHHhcCceEE
Q 004354 685 KDMVISRMKMVFNHLFC 701 (759)
Q Consensus 685 ~~~v~~~l~~vF~~v~~ 701 (759)
...+...+++.--.+..
T Consensus 160 ~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 160 ETLLTQLHARHGGQLLR 176 (204)
T ss_dssp HHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHhCCCcEEE
Confidence 34455666655333333
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=8.9e-09 Score=110.11 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=73.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeC----CHHHHHHHHHHhcc-CCCCcEEEEe-ecccCC-CcccEEEeCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF----SKVVISDMLRRNVR-DRSDMRWRVM-DMTSMQ-GGLDALMEPE 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDi----S~~~I~~a~~r~~~-~~~~i~f~~~-D~~~~~-gtfD~Ii~~~ 139 (759)
.++.+|||||||+|.++..+++. ..|+|+|+ ++.+++.+ .... ..+++.|+++ |+.+++ ++||+|+|..
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 46789999999999999999988 35999999 55433211 1111 1256899999 998877 8899999964
Q ss_pred CC---hhH-----HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 140 LG---HKL-----GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 140 ~~---~~~-----~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.. ++. ...+|..+.++|||||.|++-.+..
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 32 222 1157899999999999999877765
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=9.7e-08 Score=98.97 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=83.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||.|+|.++..|...+|..+|++||+++.+++.|++.. |+ .+++++.+|+.++.....
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l---~~v~~~~~d~~~~~~~~~-------- 147 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL---KGARALWGRAEVLAREAG-------- 147 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEECCHHHHTTSTT--------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---CceEEEECcHHHhhcccc--------
Confidence 3567999999999999999999989999999999999999999876 65 349999999988742100
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
...+||+|+...... -..+++.+.+.|+|||.|++-.
T Consensus 148 ----------------------~~~~fD~I~s~a~~~--------------~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 148 ----------------------HREAYARAVARAVAP--------------LCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp ----------------------TTTCEEEEEEESSCC--------------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred ----------------------cCCCceEEEECCcCC--------------HHHHHHHHHHHcCCCeEEEEEe
Confidence 125799999854321 1679999999999999888654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-08 Score=104.66 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=78.8
Q ss_pred CCCeEEEEcccccHHHHHHHHh----CCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH--HHhhcccCccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHEC----MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATD 602 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~----~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~--l~~~~~~~~~~ 602 (759)
.+.+||.||.|+|.++..|... .|..+|++||++|.+++.|+ ++ .++++++.+|+.++ +....
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~---~~--~~~v~~~~gD~~~~~~l~~~~------ 149 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA---SD--MENITLHQGDCSDLTTFEHLR------ 149 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG---GG--CTTEEEEECCSSCSGGGGGGS------
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh---cc--CCceEEEECcchhHHHHHhhc------
Confidence 3479999999999999888886 57789999999999999998 23 36899999998764 22211
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHH-ccCcCcEEEEEe
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD-ALSEQGLFIVNL 677 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~-~L~~~Gilv~N~ 677 (759)
...||+|++|.... --..+|..+.+ .|+|||+|++.-
T Consensus 150 -------------------------~~~fD~I~~d~~~~-------------~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 150 -------------------------EMAHPLIFIDNAHA-------------NTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp -------------------------SSCSSEEEEESSCS-------------SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred -------------------------cCCCCEEEECCchH-------------hHHHHHHHHHHhhCCCCCEEEEEe
Confidence 23699999976421 12678999996 999999999853
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=6.8e-08 Score=105.72 Aligned_cols=96 Identities=17% Similarity=0.037 Sum_probs=76.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCChh--
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHK-- 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~~-- 143 (759)
.+..+|||||||+|.++..+++... .+++++|+ +.+++.++ ..++++|+.+|+.+....-|+|++....|.
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~~ 273 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAP-----QFPGVTHVGGDMFKEVPSGDTILMKWILHDWS 273 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CCTTEEEEECCTTTCCCCCSEEEEESCGGGSC
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhh-----hcCCeEEEeCCcCCCCCCCCEEEehHHhccCC
Confidence 4678999999999999999998632 36999999 87776543 236899999999872222299999776652
Q ss_pred --HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 144 --LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 144 --~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
....+|++++++|+|||++++.++.
T Consensus 274 d~~~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 274 DQHCATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 2678999999999999999998764
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.68 E-value=6.9e-08 Score=99.46 Aligned_cols=129 Identities=19% Similarity=0.281 Sum_probs=91.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----------CCCCCCCeEEEEccHHHHHHhhcc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----------GFTQDKSLKVHITDGIKFVREMKS 597 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----------gl~~~~rl~v~i~Da~~~l~~~~~ 597 (759)
...+||.||+|+|.++..+....|..++++||+++.+++.|++.+ ++ ++++++.+|+.+++...-
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~---~nv~~~~~D~~~~l~~~~- 124 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF---QNINVLRGNAMKFLPNFF- 124 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT---TTEEEEECCTTSCGGGTS-
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC---CcEEEEeccHHHHHHHhc-
Confidence 457899999999999999999988889999999999999998875 33 479999999987665421
Q ss_pred cCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 598 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
....+|.|++...++.... .---..++..+++..+.+.|+|||+|++-.
T Consensus 125 -----------------------------~~~~~d~v~~~~p~p~~k~--~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 125 -----------------------------EKGQLSKMFFCFPDPHFKQ--RKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp -----------------------------CTTCEEEEEEESCCCC--------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------------------cccccCEEEEECCCccccc--chhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 1357899987542221100 000123345799999999999999999843
Q ss_pred cCCChhHHHHHHHHHHH
Q 004354 678 VSRSQATKDMVISRMKM 694 (759)
Q Consensus 678 ~~~~~~~~~~v~~~l~~ 694 (759)
....+.+.+.+.+..
T Consensus 174 --d~~~~~~~~~~~~~~ 188 (246)
T 2vdv_E 174 --DVKDLHEWMVKHLEE 188 (246)
T ss_dssp --SCHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHh
Confidence 344444444444433
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.2e-08 Score=106.75 Aligned_cols=96 Identities=19% Similarity=0.088 Sum_probs=76.1
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCChh--
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHK-- 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~~-- 143 (759)
.+..+|||||||+|.++..+++... .+++++|+ +.+++.++ ..++++|+.+|+.+....-|+|++....|.
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~ 275 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAP-----AFSGVEHLGGDMFDGVPKGDAIFIKWICHDWS 275 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CCTTEEEEECCTTTCCCCCSEEEEESCGGGBC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhh-----hcCCCEEEecCCCCCCCCCCEEEEechhhcCC
Confidence 4568999999999999999998732 36999999 87776543 236899999999762222299999776652
Q ss_pred --HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 144 --LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 144 --~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
...+++++++++|+|||++++.++.
T Consensus 276 ~~~~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 276 DEHCLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 2568999999999999999998764
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.2e-08 Score=110.44 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=81.7
Q ss_pred CCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC----CcccEEEeCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ----GGLDALMEPEL 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~----gtfD~Ii~~~~ 140 (759)
++.+|||+|||+|..+.+|++. + -..|+++|+|+.+++.+++++... ..++.++++|+.++. +.||+|+++..
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 7789999999999999999986 2 246999999999999999887543 357999999998754 68999997320
Q ss_pred ----C----------h----------hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 141 ----G----------H----------KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 141 ----~----------~----------~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
. + .....++.++.++|||||++++.|.+
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 0 0 01357899999999999999998864
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-07 Score=94.33 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=80.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
+.+||.||+|.|.++..|... +..++++||+++.+++.|++.+.- ...++++++.+|+.+. .
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~------------ 106 (219)
T 3dlc_A 44 AGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI----P------------ 106 (219)
T ss_dssp EEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC----S------------
T ss_pred CCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC----C------------
Confidence 349999999999999999988 778999999999999999998621 1256899999996542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
.....||+|+... ....+ ---..+|+.+++.|+|||.+++....
T Consensus 107 -----------------~~~~~~D~v~~~~----~l~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 107 -----------------IEDNYADLIVSRG----SVFFW------EDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp -----------------SCTTCEEEEEEES----CGGGC------SCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred -----------------CCcccccEEEECc----hHhhc------cCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 1136899999832 10000 01267999999999999999886433
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-07 Score=90.36 Aligned_cols=119 Identities=19% Similarity=0.243 Sum_probs=90.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.+|.|.|.++..+.... .++++||+++.+++.|++.+.. ..+++++++.+|..+.+...
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----------- 98 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI----------- 98 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-----------
Confidence 355799999999999999888876 6999999999999999997621 12368999999988754321
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHH
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 686 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~ 686 (759)
..||+|+++..- .. -..+++.+.+.|+|||.+++.... .....
T Consensus 99 ----------------------~~~D~v~~~~~~-----------~~--~~~~l~~~~~~l~~gG~l~~~~~~--~~~~~ 141 (192)
T 1l3i_A 99 ----------------------PDIDIAVVGGSG-----------GE--LQEILRIIKDKLKPGGRIIVTAIL--LETKF 141 (192)
T ss_dssp ----------------------CCEEEEEESCCT-----------TC--HHHHHHHHHHTEEEEEEEEEEECB--HHHHH
T ss_pred ----------------------CCCCEEEECCch-----------HH--HHHHHHHHHHhcCCCcEEEEEecC--cchHH
Confidence 369999984211 11 278999999999999999988754 33334
Q ss_pred HHHHHHHHh-c
Q 004354 687 MVISRMKMV-F 696 (759)
Q Consensus 687 ~v~~~l~~v-F 696 (759)
.+.+.+++. |
T Consensus 142 ~~~~~l~~~g~ 152 (192)
T 1l3i_A 142 EAMECLRDLGF 152 (192)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 566667665 6
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-07 Score=101.47 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=91.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
+...+||.+|+|+|.++..+.... .+|++||+++.+++.|++.+ ++ .+.+++++.+|+.+++.....
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl-~~~~v~~i~~D~~~~l~~~~~------- 221 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGL-EQAPIRWICEDAMKFIQREER------- 221 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTC-TTSCEEEECSCHHHHHHHHHH-------
T ss_pred CCCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCC-CccceEEEECcHHHHHHHHHh-------
Confidence 345699999999999998888753 39999999999999999987 54 223699999999999865320
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC-----hHHHHHHHHHccCcCcEEEEEecC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~-----~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
.+.+||+||+|.-.- +.+ +..... -..++..+.+.|+|||+|++...+
T Consensus 222 ----------------------~~~~fD~Ii~dPP~~----~~~-~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 222 ----------------------RGSTYDIILTDPPKF----GRG-THGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ----------------------HTCCBSEEEECCCSE----EEC-TTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ----------------------cCCCceEEEECCccc----cCC-chHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 025799999975211 000 000011 257899999999999997765544
Q ss_pred CChhHHHHHHHHHHHhcC
Q 004354 680 RSQATKDMVISRMKMVFN 697 (759)
Q Consensus 680 ~~~~~~~~v~~~l~~vF~ 697 (759)
........+...+++.+.
T Consensus 275 ~~~~~~~~~~~~l~~a~~ 292 (332)
T 2igt_A 275 SIRASFYSMHELMRETMR 292 (332)
T ss_dssp CTTSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 432222333444454443
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-07 Score=101.37 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=81.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC-CcccEEEeCCCChh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFH-GITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-GGLDALMEPELGHK 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~-~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~~ 143 (759)
....+|||||||+|.++..+++.... +++..|. |.+++.++++.... ..+++|+.+|+.+.+ ..+|++++....|.
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~ 256 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHD 256 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGG
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeeccc
Confidence 45679999999999999999988332 5788886 78999988876432 367999999998766 67899999776553
Q ss_pred ----HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 144 ----LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 144 ----~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
....+|+++++.|+|||+++++...
T Consensus 257 ~~d~~~~~iL~~~~~al~pgg~lli~e~~ 285 (353)
T 4a6d_A 257 WADGKCSHLLERIYHTCKPGGGILVIESL 285 (353)
T ss_dssp SCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence 2678899999999999999998753
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.1e-08 Score=110.36 Aligned_cols=111 Identities=16% Similarity=0.079 Sum_probs=86.5
Q ss_pred HHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC--
Q 004354 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~-- 129 (759)
..+...+.. .++.+|||+|||+|..+.+++.. +-..|+++|+|+.+++.+++++... ..++.++++|+.++.
T Consensus 95 ~l~~~~L~~---~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~ 171 (456)
T 3m4x_A 95 MIVGTAAAA---KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH 171 (456)
T ss_dssp HHHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH
T ss_pred HHHHHHcCC---CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh
Confidence 344455543 57889999999999999999875 2246999999999999998887543 356899999987764
Q ss_pred --CcccEEEeCCC----C-----h---------------hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 --GGLDALMEPEL----G-----H---------------KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 --gtfD~Ii~~~~----~-----~---------------~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++||+|+++.. . . .....++.++.++|||||+++..|.+
T Consensus 172 ~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 172 FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 78999997431 0 0 01347899999999999999998864
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.65 E-value=7.1e-08 Score=95.97 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=81.3
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.||.|+|.++..+...+|..++++||+++.+++.|++.+....-++++++.+|+.++. .
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~------------- 129 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP---S------------- 129 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC---C-------------
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC---c-------------
Confidence 469999999999999999998888999999999999999998762211234999999976531 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
..+||+|+..... + -..+++.+++.|+|||.+++-.....
T Consensus 130 ------------------~~~~D~i~~~~~~----------~----~~~~l~~~~~~L~~gG~l~~~~~~~~ 169 (207)
T 1jsx_A 130 ------------------EPPFDGVISRAFA----------S----LNDMVSWCHHLPGEQGRFYALKGQMP 169 (207)
T ss_dssp ------------------CSCEEEEECSCSS----------S----HHHHHHHHTTSEEEEEEEEEEESSCC
T ss_pred ------------------cCCcCEEEEeccC----------C----HHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 2579999973210 1 26899999999999999998764433
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-07 Score=104.06 Aligned_cols=134 Identities=13% Similarity=0.109 Sum_probs=102.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.+|.|.|..+..|...++. ..|++||+++.+++.|++.+ |+ . +.++.+|+.++.....
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~---~-v~~~~~Da~~l~~~~~------- 168 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA---P-LAVTQAPPRALAEAFG------- 168 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC---C-CEEECSCHHHHHHHHC-------
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---e-EEEEECCHHHhhhhcc-------
Confidence 34579999999999999999998865 69999999999999999876 65 3 8999999999764332
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--------------ChHHHHHHHHHccCc
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 669 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--------------~~~~fl~~~~~~L~~ 669 (759)
..||+|++|+-.+. .|+..-.+.. +..++|+.+.+.|+|
T Consensus 169 -------------------------~~FD~Il~D~PcSg--~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp 221 (464)
T 3m6w_A 169 -------------------------TYFHRVLLDAPCSG--EGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP 221 (464)
T ss_dssp -------------------------SCEEEEEEECCCCC--GGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE
T ss_pred -------------------------ccCCEEEECCCcCC--ccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57999999985432 1221111111 137899999999999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhcCce
Q 004354 670 QGLFIVNLVSRSQATKDMVISRMKMVFNHL 699 (759)
Q Consensus 670 ~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v 699 (759)
||.|++...+-..+..+.++..+.+-++..
T Consensus 222 GG~LvysTCs~~~eEne~vv~~~l~~~~~~ 251 (464)
T 3m6w_A 222 GGVLVYSTCTFAPEENEGVVAHFLKAHPEF 251 (464)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHCTTE
T ss_pred CcEEEEEeccCchhcCHHHHHHHHHHCCCc
Confidence 999998876666666667777777766543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.9e-08 Score=95.39 Aligned_cols=118 Identities=9% Similarity=0.060 Sum_probs=84.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
...+||.+|+|.|.++..+...+ |..++++||+++.+++.|++.+... ..++++++.+|+.++....
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~----------- 90 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI----------- 90 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC-----------
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc-----------
Confidence 44699999999999999888875 5669999999999999999987321 1468999999986653211
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCC-CCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDS-PDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s-~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
..+||+|++|..- +....... ...-....+++.+.+.|+|||.+++..+..
T Consensus 91 ---------------------~~~fD~v~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 91 ---------------------DCPVKAVMFNLGYLPSGDHSIS--TRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp ---------------------CSCEEEEEEEESBCTTSCTTCB--CCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred ---------------------cCCceEEEEcCCcccCcccccc--cCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 2679999997521 10000000 000012469999999999999999887543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=92.56 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=83.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.+|.|.|.++..+... +..+|++||+++.+++.|++.+... ..++++++.+|+.+++.....
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------- 112 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---------- 112 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH----------
T ss_pred CCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh----------
Confidence 4569999999999998877764 5569999999999999999987221 145799999999998765420
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHH--HHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTV--KDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~--~~~L~~~Gilv~N~~~~ 680 (759)
...+||+|++|.. - ..-....+++.+ .+.|+|||++++.....
T Consensus 113 -------------------~~~~fD~i~~~~~--~---------~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 113 -------------------EKLQFDLVLLDPP--Y---------AKQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp -------------------TTCCEEEEEECCC--G---------GGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred -------------------cCCCCCEEEECCC--C---------CchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 1257999998531 0 011236677777 78899999999877544
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.2e-08 Score=106.86 Aligned_cols=99 Identities=12% Similarity=0.201 Sum_probs=78.6
Q ss_pred CCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC----C-------------
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----G------------- 130 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~----g------------- 130 (759)
+.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++...+ .+++|+++|+.+.. +
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~ 292 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 292 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGG
T ss_pred CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccc
Confidence 578999999999999988874 5679999999999999998875443 57999999987652 1
Q ss_pred --cccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 131 --GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 131 --tfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
.||+|+++.... .+..++.+.|+++|+++.++..+...
T Consensus 293 ~~~fD~Vv~dPPr~----g~~~~~~~~l~~~g~ivyvsc~p~t~ 332 (369)
T 3bt7_A 293 SYQCETIFVDPPRS----GLDSETEKMVQAYPRILYISCNPETL 332 (369)
T ss_dssp GCCEEEEEECCCTT----CCCHHHHHHHTTSSEEEEEESCHHHH
T ss_pred cCCCCEEEECcCcc----ccHHHHHHHHhCCCEEEEEECCHHHH
Confidence 799999975321 23456677788999999999875543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-07 Score=98.58 Aligned_cols=147 Identities=15% Similarity=0.187 Sum_probs=101.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||.|+|.++..+...+|..++++||+++.+++.|++.+ |+ ++++++.+|..+.+.
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~v~~~~~d~~~~~~------------ 173 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWFSALA------------ 173 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTTGGGT------------
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEEcchhhhcc------------
Confidence 346899999999999999998889899999999999999999887 54 379999999765421
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCC-----C--CCcCCCCC--------ChHHHHHHHHHccCcC
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS-----G--MTCPAADF--------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~-----g--~scPp~~f--------~~~~fl~~~~~~L~~~ 670 (759)
..+||+|+.+.--..... . ..-|...+ .-..+++.+.+.|+||
T Consensus 174 ----------------------~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkpg 231 (276)
T 2b3t_A 174 ----------------------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG 231 (276)
T ss_dssp ----------------------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE
T ss_pred ----------------------cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 257999999631100000 0 00122222 1267899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHh-cCceEEEeecCCccEEEEEe
Q 004354 671 GLFIVNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGL 715 (759)
Q Consensus 671 Gilv~N~~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~ 715 (759)
|.+++........ .+.+.+++. |..+...+--.+...+++|.
T Consensus 232 G~l~~~~~~~~~~---~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 232 GFLLLEHGWQQGE---AVRQAFILAGYHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp EEEEEECCSSCHH---HHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred CEEEEEECchHHH---HHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence 9999876443333 344445443 76665555445566777664
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.63 E-value=6.1e-08 Score=92.95 Aligned_cols=109 Identities=13% Similarity=0.045 Sum_probs=82.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|.|.++..+....+. +++||+++.+++.|++.+....- +++++.+|+.+++.....
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~----------- 106 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKA----------- 106 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHH-----------
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhc-----------
Confidence 4578999999999999988887543 99999999999999998732111 799999999998765431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHH--HccCcCcEEEEEecCCC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVK--DALSEQGLFIVNLVSRS 681 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~--~~L~~~Gilv~N~~~~~ 681 (759)
...+||+|++|.--. -...++++.+. +.|+|||++++......
T Consensus 107 ------------------~~~~~D~i~~~~~~~------------~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 107 ------------------QGERFTVAFMAPPYA------------MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp ------------------TTCCEEEEEECCCTT------------SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred ------------------cCCceEEEEECCCCc------------hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 124799999963110 11246777777 99999999999876544
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.6e-07 Score=101.50 Aligned_cols=127 Identities=8% Similarity=0.125 Sum_probs=85.9
Q ss_pred HHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccC----C
Q 004354 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM----Q 129 (759)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~----~ 129 (759)
..+..++.. .++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.|++++...+ .+++|+++|+.+. +
T Consensus 276 ~~~~~~l~~---~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~ 351 (433)
T 1uwv_A 276 ARALEWLDV---QPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 (433)
T ss_dssp HHHHHHHTC---CTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG
T ss_pred HHHHHhhcC---CCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhh
Confidence 334444443 467899999999999999999884 469999999999999998875443 4799999999873 1
Q ss_pred ---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEE
Q 004354 130 ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 188 (759)
Q Consensus 130 ---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~ 188 (759)
+.||+|+++...... ..+++.+.+ ++|++.++ ++..+....+.+......||.+..
T Consensus 352 ~~~~~fD~Vv~dPPr~g~-~~~~~~l~~-~~p~~ivy-vsc~p~tlard~~~l~~~Gy~~~~ 410 (433)
T 1uwv_A 352 WAKNGFDKVLLDPARAGA-AGVMQQIIK-LEPIRIVY-VSCNPATLARDSEALLKAGYTIAR 410 (433)
T ss_dssp GGTTCCSEEEECCCTTCC-HHHHHHHHH-HCCSEEEE-EESCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhcCCCCEEEECCCCccH-HHHHHHHHh-cCCCeEEE-EECChHHHHhhHHHHHHCCcEEEE
Confidence 579999997632211 245555443 67776544 455444333333222233676655
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-07 Score=94.39 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=95.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.+|+|.|.++..|...+ |..+|++||+++.+++.|++.... .++++++.+|+.+......
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~--~~~v~~~~~d~~~~~~~~~---------- 139 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--RRNIVPILGDATKPEEYRA---------- 139 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--CTTEEEEECCTTCGGGGTT----------
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc--cCCCEEEEccCCCcchhhc----------
Confidence 345689999999999999998875 557999999999999999888754 2689999999765311000
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC-----
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS----- 681 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~----- 681 (759)
....||+|++|....+ ....++..+.+.|+|||.|++-+....
T Consensus 140 --------------------~~~~~D~v~~~~~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 187 (227)
T 1g8a_A 140 --------------------LVPKVDVIFEDVAQPT------------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTK 187 (227)
T ss_dssp --------------------TCCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTS
T ss_pred --------------------ccCCceEEEECCCCHh------------HHHHHHHHHHHhcCCCCEEEEEEecCCCCCCC
Confidence 0247999998753111 123569999999999998887642211
Q ss_pred --hhHHHHHHHHHHHhcCceEEEeecC--CccEEEEEe
Q 004354 682 --QATKDMVISRMKMVFNHLFCLQLEE--DVNLVLFGL 715 (759)
Q Consensus 682 --~~~~~~v~~~l~~vF~~v~~~~~~~--~~N~Vl~a~ 715 (759)
.......+..+.+.|..+....... ....++++.
T Consensus 188 ~~~~~~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~ 225 (227)
T 1g8a_A 188 EPEQVFREVERELSEYFEVIERLNLEPYEKDHALFVVR 225 (227)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEECTTTSSSEEEEEEE
T ss_pred ChhhhhHHHHHHHHhhceeeeEeccCcccCCCEEEEEE
Confidence 1112223444455576665555432 234455554
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-07 Score=93.95 Aligned_cols=143 Identities=16% Similarity=0.179 Sum_probs=97.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|+|.++.+|....|..+|++||+++.+++.|++.... .+++.++.+|+.+......
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~------------ 139 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--RENIIPILGDANKPQEYAN------------ 139 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--CTTEEEEECCTTCGGGGTT------------
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc--CCCeEEEECCCCCcccccc------------
Confidence 45689999999999999999998767999999999999999988753 3789999999765211011
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC--Ch----
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR--SQ---- 682 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~--~~---- 682 (759)
. ...||+|+.|+...+ ....+++.+.+.|+|||.|++-+..+ +.
T Consensus 140 -----------------~-~~~~D~v~~~~~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 189 (230)
T 1fbn_A 140 -----------------I-VEKVDVIYEDVAQPN------------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP 189 (230)
T ss_dssp -----------------T-SCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH
T ss_pred -----------------c-CccEEEEEEecCChh------------HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCH
Confidence 1 156999997652221 23678999999999999988853211 11
Q ss_pred -h-HHHHHHHHHHHh-cCceEEEeecC--CccEEEEEec
Q 004354 683 -A-TKDMVISRMKMV-FNHLFCLQLEE--DVNLVLFGLS 716 (759)
Q Consensus 683 -~-~~~~v~~~l~~v-F~~v~~~~~~~--~~N~Vl~a~~ 716 (759)
. +.+. +..|.+. |..+....+.. ....+++|.+
T Consensus 190 ~~~~~~~-l~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 190 KEIFKEQ-KEILEAGGFKIVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp HHHHHHH-HHHHHHHTEEEEEEEECTTTSTTEEEEEEEE
T ss_pred HHhhHHH-HHHHHHCCCEEEEEEccCCCccceEEEEEEe
Confidence 1 1133 3355553 65544444332 2345666654
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-08 Score=97.59 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=68.6
Q ss_pred CCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC------CcccEEEeCC
Q 004354 66 SSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------GGLDALMEPE 139 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~------gtfD~Ii~~~ 139 (759)
..++.+|||+|||. +++|+|+.|++.++++... +++|.++|+.+++ ++||+|++..
T Consensus 10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~V~~~~ 71 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN---EGRVSVENIKQLLQSAHKESSFDIILSGL 71 (176)
T ss_dssp CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT---TSEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc---CcEEEEechhcCccccCCCCCEeEEEECC
Confidence 36789999999996 2399999999999888632 4899999998753 6899999976
Q ss_pred CChh---HHHHHHHHHHHhcccCcEEEEEE
Q 004354 140 LGHK---LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 140 ~~~~---~~~~~l~ei~rvLkpGG~liiit 166 (759)
..++ ....++++++|+|||||++++..
T Consensus 72 ~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 72 VPGSTTLHSAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp STTCCCCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcccCHHHHHHHHHHHCCCCEEEEEEc
Confidence 5443 36899999999999999999853
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-07 Score=97.64 Aligned_cols=120 Identities=19% Similarity=0.184 Sum_probs=89.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
....+||.+|.|.|.++..+... .|..++++||+++.+++.|++.+... ..++++++.+|+.+. ..
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~---------- 162 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--EL---------- 162 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--CC----------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--CC----------
Confidence 34569999999999999988887 56789999999999999999987210 146899999997653 11
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHH
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 685 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~ 685 (759)
....||+|++|.... ..+++.+.+.|+|||.+++...+. ...
T Consensus 163 ---------------------~~~~~D~v~~~~~~~---------------~~~l~~~~~~L~~gG~l~~~~~~~--~~~ 204 (258)
T 2pwy_A 163 ---------------------EEAAYDGVALDLMEP---------------WKVLEKAALALKPDRFLVAYLPNI--TQV 204 (258)
T ss_dssp ---------------------CTTCEEEEEEESSCG---------------GGGHHHHHHHEEEEEEEEEEESCH--HHH
T ss_pred ---------------------CCCCcCEEEECCcCH---------------HHHHHHHHHhCCCCCEEEEEeCCH--HHH
Confidence 125799999964221 368999999999999999876433 333
Q ss_pred HHHHHHHHHh-cC
Q 004354 686 DMVISRMKMV-FN 697 (759)
Q Consensus 686 ~~v~~~l~~v-F~ 697 (759)
..++..+++. |.
T Consensus 205 ~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 205 LELVRAAEAHPFR 217 (258)
T ss_dssp HHHHHHHTTTTEE
T ss_pred HHHHHHHHHCCCc
Confidence 4455666543 44
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.8e-08 Score=96.27 Aligned_cols=114 Identities=11% Similarity=0.142 Sum_probs=79.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|+|.++..|... ..+|++||++|.+++.|++.+ |+ ++++++.+|...+ ....
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~~~~~l-~~~~-------- 86 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGI---ENTELILDGHENL-DHYV-------- 86 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTC---CCEEEEESCGGGG-GGTC--------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCcHHHH-Hhhc--------
Confidence 34579999999999999999887 569999999999999999987 44 5799999765442 1111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCC-CCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDS-PDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s-~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
+.+||+|++++.. ......+. ...-....+++.+.+.|+|||.|++-++..
T Consensus 87 -----------------------~~~fD~v~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 87 -----------------------REPIRAAIFNLGYLPSADKSVI--TKPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp -----------------------CSCEEEEEEEEC-------------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred -----------------------cCCcCEEEEeCCCCCCcchhcc--cChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 3579999987411 10000000 000113468899999999999999877654
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-07 Score=103.54 Aligned_cols=114 Identities=16% Similarity=0.118 Sum_probs=87.4
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC---------------------------------------Ce
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------------HG 93 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~---------------------------------------~~ 93 (759)
+...+...... .++.+|||+|||+|.++..++..+. ..
T Consensus 183 lAa~ll~~~~~---~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 259 (385)
T 3ldu_A 183 LAAGLIYLTPW---KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK 259 (385)
T ss_dssp HHHHHHHTSCC---CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHhhCC---CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence 44444444443 5678999999999999988876532 25
Q ss_pred EEEEeCCHHHHHHHHHHhccCCC--CcEEEEeecccCC--CcccEEEeCCCCh------hHHHHHHHHHHHhccc--CcE
Q 004354 94 ITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQ--GGLDALMEPELGH------KLGNQYLSEVKRLLKS--GGK 161 (759)
Q Consensus 94 VtgIDiS~~~I~~a~~r~~~~~~--~i~f~~~D~~~~~--gtfD~Ii~~~~~~------~~~~~~l~ei~rvLkp--GG~ 161 (759)
|+|+|+++.+++.|++++...+. .++|.++|+.++. +.||+|+++.... .....+.+++.+.|++ ||.
T Consensus 260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~ 339 (385)
T 3ldu_A 260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS 339 (385)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 99999999999999998754432 6999999999887 7899999976421 2366778888888876 899
Q ss_pred EEEEEcCc
Q 004354 162 FVCLTLAE 169 (759)
Q Consensus 162 liiit~~~ 169 (759)
+++++-..
T Consensus 340 ~~iit~~~ 347 (385)
T 3ldu_A 340 YYLITSYE 347 (385)
T ss_dssp EEEEESCT
T ss_pred EEEEECCH
Confidence 88888643
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-07 Score=95.49 Aligned_cols=105 Identities=23% Similarity=0.336 Sum_probs=83.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+.+||.||+|.|.++..+...+|..++++||+++.+++.|++.+.- ..+++++.+|+.++ .
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~----~----------- 105 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG--NLKVKYIEADYSKY----D----------- 105 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS--CTTEEEEESCTTTC----C-----------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc--CCCEEEEeCchhcc----C-----------
Confidence 456899999999999999999999989999999999999999999853 33899999997543 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChH---HHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG---SFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~---~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
. ...||+|++.. . -..+-.. .+|+.+++.|+|||.|++....
T Consensus 106 ------------------~-~~~fD~v~~~~----~-------l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 150 (234)
T 3dtn_A 106 ------------------F-EEKYDMVVSAL----S-------IHHLEDEDKKELYKRSYSILKESGIFINADLV 150 (234)
T ss_dssp ------------------C-CSCEEEEEEES----C-------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ------------------C-CCCceEEEEeC----c-------cccCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 1 15799999831 1 1222222 4899999999999999876533
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=97.54 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=82.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+.+||.||+|+|.++..+...+|..++++||+++.+++.|++.. ++++++.+|+.++. .
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~---~----------- 92 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----PNTNFGKADLATWK---P----------- 92 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----TTSEEEECCTTTCC---C-----------
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----CCcEEEECChhhcC---c-----------
Confidence 4557999999999999999998888889999999999999999882 47899999975431 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
...||+|+... ....+ + --..+|+.+++.|+|||.|++.....
T Consensus 93 --------------------~~~fD~v~~~~----~l~~~--~----~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 93 --------------------AQKADLLYANA----VFQWV--P----DHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp --------------------SSCEEEEEEES----CGGGS--T----THHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred --------------------cCCcCEEEEeC----chhhC--C----CHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 35799999822 11111 1 12679999999999999999987544
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.60 E-value=8.1e-08 Score=100.70 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=89.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
....+||.+|+|.|.++..|... .|..++++||+++.+++.|++.+... ..++++++.+|+.+.+ .
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~--------- 176 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---S--------- 176 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC---C---------
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC---c---------
Confidence 44579999999999999988887 67789999999999999999987322 2367999999976521 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHH
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 685 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~ 685 (759)
...||+|++|+... ..+|+.+.+.|+|||.+++..... ...
T Consensus 177 ----------------------~~~fD~Vi~~~~~~---------------~~~l~~~~~~LkpgG~l~i~~~~~--~~~ 217 (275)
T 1yb2_A 177 ----------------------DQMYDAVIADIPDP---------------WNHVQKIASMMKPGSVATFYLPNF--DQS 217 (275)
T ss_dssp ----------------------SCCEEEEEECCSCG---------------GGSHHHHHHTEEEEEEEEEEESSH--HHH
T ss_pred ----------------------CCCccEEEEcCcCH---------------HHHHHHHHHHcCCCCEEEEEeCCH--HHH
Confidence 25799999954211 468999999999999999877432 233
Q ss_pred HHHHHHHHHh-cC
Q 004354 686 DMVISRMKMV-FN 697 (759)
Q Consensus 686 ~~v~~~l~~v-F~ 697 (759)
..+.+.+++. |.
T Consensus 218 ~~~~~~l~~~Gf~ 230 (275)
T 1yb2_A 218 EKTVLSLSASGMH 230 (275)
T ss_dssp HHHHHHSGGGTEE
T ss_pred HHHHHHHHHCCCe
Confidence 4445555543 44
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-07 Score=102.28 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=86.9
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC---------------------------------------C
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------------H 92 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~---------------------------------------~ 92 (759)
.+...+...... .++..|||++||+|.++..++..+. .
T Consensus 188 ~lAa~ll~l~~~---~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 264 (393)
T 3k0b_A 188 TMAAALVLLTSW---HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL 264 (393)
T ss_dssp HHHHHHHHHSCC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHhCC---CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence 344445555443 5678999999999999988876532 2
Q ss_pred eEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--CcccEEEeCCCCh------hHHHHHHHHHHHhccc--Cc
Q 004354 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--GGLDALMEPELGH------KLGNQYLSEVKRLLKS--GG 160 (759)
Q Consensus 93 ~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--gtfD~Ii~~~~~~------~~~~~~l~ei~rvLkp--GG 160 (759)
.|+|+|+|+.+++.|++++...+ ..+++.++|+.+++ ..||+|+++.... .....+.+.+.+.|++ ||
T Consensus 265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~ 344 (393)
T 3k0b_A 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTW 344 (393)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCC
Confidence 49999999999999999876544 35999999999887 7899999986321 2255677777777776 99
Q ss_pred EEEEEEcCc
Q 004354 161 KFVCLTLAE 169 (759)
Q Consensus 161 ~liiit~~~ 169 (759)
.+++++-..
T Consensus 345 ~~~iit~~~ 353 (393)
T 3k0b_A 345 SVYVLTSYE 353 (393)
T ss_dssp EEEEEECCT
T ss_pred EEEEEECCH
Confidence 998888643
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.4e-07 Score=92.34 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=102.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||+|+|.++..|.... |.-+|.+||++|.+++.|++... ..+++..+.+|+...-. ..
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~--~~~ni~~V~~d~~~p~~-~~---------- 142 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR--DRRNIFPILGDARFPEK-YR---------- 142 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHST--TCTTEEEEESCTTCGGG-GT----------
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhH--hhcCeeEEEEeccCccc-cc----------
Confidence 455799999999999999998875 67799999999999999998864 34679999998655311 11
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC-----
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS----- 681 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~----- 681 (759)
.....+|+|+.|+.-.+ ....++.++++.|+|||.+++-+..++
T Consensus 143 -------------------~~~~~vDvVf~d~~~~~------------~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~ 191 (233)
T 4df3_A 143 -------------------HLVEGVDGLYADVAQPE------------QAAIVVRNARFFLRDGGYMLMAIKARSIDVTT 191 (233)
T ss_dssp -------------------TTCCCEEEEEECCCCTT------------HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHT
T ss_pred -------------------cccceEEEEEEeccCCh------------hHHHHHHHHHHhccCCCEEEEEEecccCCCCC
Confidence 12367999999874432 126799999999999999988664442
Q ss_pred --hhHHHHHHHHHHHh-cCceEEEeecC--CccEEEEEe
Q 004354 682 --QATKDMVISRMKMV-FNHLFCLQLEE--DVNLVLFGL 715 (759)
Q Consensus 682 --~~~~~~v~~~l~~v-F~~v~~~~~~~--~~N~Vl~a~ 715 (759)
.......++.|++. |.-+-.+.... ....++||.
T Consensus 192 p~~~~~~~ev~~L~~~GF~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 192 EPSEVYKREIKTLMDGGLEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp CCCHHHHHHHHHHHHTTCCEEEEEECTTTSTTEEEEEEC
T ss_pred ChHHHHHHHHHHHHHCCCEEEEEEccCCCCCceEEEEEE
Confidence 33445567777654 76555444432 335556653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-07 Score=101.22 Aligned_cols=120 Identities=15% Similarity=0.203 Sum_probs=86.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcC-------CC----CCCCeEEEEccHHHHHHhh
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFG-------FT----QDKSLKVHITDGIKFVREM 595 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg-------l~----~~~rl~v~i~Da~~~l~~~ 595 (759)
....+||.+|.|.|.++..|.... |..+|++||++|.+++.|++.+. +. ..++++++.+|+.+.+...
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 345699999999999999988874 66799999999999999999863 11 1368999999987653222
Q ss_pred cccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 596 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
. ...||+|++|..+. ..++..+.+.|+|||.|++
T Consensus 184 ~-------------------------------~~~fD~V~~~~~~~---------------~~~l~~~~~~LkpgG~lv~ 217 (336)
T 2b25_A 184 K-------------------------------SLTFDAVALDMLNP---------------HVTLPVFYPHLKHGGVCAV 217 (336)
T ss_dssp -----------------------------------EEEEEECSSST---------------TTTHHHHGGGEEEEEEEEE
T ss_pred C-------------------------------CCCeeEEEECCCCH---------------HHHHHHHHHhcCCCcEEEE
Confidence 2 24699999965321 1278999999999999997
Q ss_pred EecCCChhHHHHHHHHHHHh
Q 004354 676 NLVSRSQATKDMVISRMKMV 695 (759)
Q Consensus 676 N~~~~~~~~~~~v~~~l~~v 695 (759)
-.. .......+++.+++.
T Consensus 218 ~~~--~~~~~~~~~~~l~~~ 235 (336)
T 2b25_A 218 YVV--NITQVIELLDGIRTC 235 (336)
T ss_dssp EES--SHHHHHHHHHHHHHH
T ss_pred EeC--CHHHHHHHHHHHHhc
Confidence 664 334444556666653
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-07 Score=101.86 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=98.3
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..+||.+|+|.|.++..+....|..+|++||+++.+++.|++.+ |+....+++++.+|+.+.+ .
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~---~---------- 289 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---E---------- 289 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC---C----------
T ss_pred CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC---C----------
Confidence 47999999999999999999999999999999999999999987 4432346888999976631 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHH
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 686 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~ 686 (759)
..+||+|++|.- -.. +. . ...-...++++.+.+.|+|||.|++-. .+....
T Consensus 290 ---------------------~~~fD~Ii~npp--fh~-~~-~-~~~~~~~~~l~~~~~~LkpgG~l~iv~-n~~~~~-- 340 (375)
T 4dcm_A 290 ---------------------PFRFNAVLCNPP--FHQ-QH-A-LTDNVAWEMFHHARRCLKINGELYIVA-NRHLDY-- 340 (375)
T ss_dssp ---------------------TTCEEEEEECCC--C----------CCHHHHHHHHHHHHEEEEEEEEEEE-ETTSCH--
T ss_pred ---------------------CCCeeEEEECCC--ccc-Cc-c-cCHHHHHHHHHHHHHhCCCCcEEEEEE-ECCcCH--
Confidence 357999999531 000 00 0 011123579999999999999988733 333332
Q ss_pred HHHHHHHHhcCceEEEeecCCccEEEEEec
Q 004354 687 MVISRMKMVFNHLFCLQLEEDVNLVLFGLS 716 (759)
Q Consensus 687 ~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~ 716 (759)
...+.+.|..+..+. .+..-.|+-+..
T Consensus 341 --~~~l~~~fg~~~~~a-~~~~F~V~~~~~ 367 (375)
T 4dcm_A 341 --FHKLKKIFGNCTTIA-TNNKFVVLKAVK 367 (375)
T ss_dssp --HHHHHHHHSCCEEEE-ECSSEEEEEEEC
T ss_pred --HHHHHHhcCCEEEEe-eCCCEEEEEEcC
Confidence 355677888766655 333344444443
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-07 Score=98.74 Aligned_cols=86 Identities=9% Similarity=0.048 Sum_probs=70.4
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ- 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~- 129 (759)
+.+...+...+.. .++.+|||||||+|.++..|++.+ .+|+++|+++.+++.+++++. ..++++++++|+.+++
T Consensus 36 ~~i~~~Iv~~l~~---~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~-~~~~v~vi~gD~l~~~~ 110 (295)
T 3gru_A 36 KNFVNKAVESANL---TKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKE-LYNNIEIIWGDALKVDL 110 (295)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHH-HCSSEEEEESCTTTSCG
T ss_pred HHHHHHHHHhcCC---CCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhc-cCCCeEEEECchhhCCc
Confidence 4455556666554 577899999999999999999985 469999999999999988875 4568999999999876
Q ss_pred --CcccEEEeCCCC
Q 004354 130 --GGLDALMEPELG 141 (759)
Q Consensus 130 --gtfD~Ii~~~~~ 141 (759)
..||+|+++...
T Consensus 111 ~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 111 NKLDFNKVVANLPY 124 (295)
T ss_dssp GGSCCSEEEEECCG
T ss_pred ccCCccEEEEeCcc
Confidence 569999987543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-07 Score=98.44 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=84.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..+...++ .+|++||+++.+++.|++.+ |+ .++++++.+|+.++ .
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~----~-------- 135 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDS--PRRKEVRIQGWEEF----D-------- 135 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCC--SSCEEEEECCGGGC----C--------
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECCHHHc----C--------
Confidence 4456999999999999999988876 69999999999999999987 44 45899999998654 2
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCC---CCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA---ADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp---~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
..||+|+..- ....+..|. ..-.-..+|+.+.+.|+|||.|++..+...
T Consensus 136 ------------------------~~fD~v~~~~----~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 136 ------------------------EPVDRIVSLG----AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp ------------------------CCCSEEEEES----CGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred ------------------------CCccEEEEcc----hHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 5799999731 111111110 001126899999999999999999877654
Q ss_pred h
Q 004354 682 Q 682 (759)
Q Consensus 682 ~ 682 (759)
.
T Consensus 188 ~ 188 (302)
T 3hem_A 188 D 188 (302)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=8.8e-08 Score=104.33 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=76.3
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCChhH--
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHKL-- 144 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~~~-- 144 (759)
+..+|||||||+|.++..+++... .+++++|+ +.+++.+++ .++++++.+|+.+....||+|++....|+.
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d 266 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG-----NENLNFVGGDMFKSIPSADAVLLKWVLHDWND 266 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC-----CSSEEEEECCTTTCCCCCSEEEEESCGGGSCH
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc-----CCCcEEEeCccCCCCCCceEEEEcccccCCCH
Confidence 457999999999999999998743 26999999 677765432 356999999998722569999998765543
Q ss_pred --HHHHHHHHHHhccc---CcEEEEEEcC
Q 004354 145 --GNQYLSEVKRLLKS---GGKFVCLTLA 168 (759)
Q Consensus 145 --~~~~l~ei~rvLkp---GG~liiit~~ 168 (759)
...++++++++|+| ||++++.++.
T Consensus 267 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 295 (358)
T 1zg3_A 267 EQSLKILKNSKEAISHKGKDGKVIIIDIS 295 (358)
T ss_dssp HHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence 45999999999999 9999998754
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.57 E-value=7.5e-08 Score=96.20 Aligned_cols=109 Identities=15% Similarity=0.123 Sum_probs=80.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-C-CCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-D-KSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~-~-~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+||.+|+|+|.++..+.... ..+|++||+||.+++.|++.+.... . ++++++.+|+.+++....
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~----------- 121 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ----------- 121 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC-----------
T ss_pred CCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc-----------
Confidence 4689999999999988765553 3589999999999999999872211 1 589999999988754321
Q ss_pred cccccccCCCCCCCCCCCCCCCc-eeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHH--HHccCcCcEEEEEecCCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNAR-VDILIIDVDSPDSSSGMTCPAADFVEGSFLLTV--KDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~-yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~--~~~L~~~Gilv~N~~~~~ 681 (759)
... ||+|++|.. . ..-...++++.+ .+.|+|||+|++......
T Consensus 122 --------------------~~~~fD~I~~~~~---~--------~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 122 --------------------NQPHFDVVFLDPP---F--------HFNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp --------------------SSCCEEEEEECCC---S--------SSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred --------------------cCCCCCEEEECCC---C--------CCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 257 999999532 0 001135678888 557999999998775543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.8e-07 Score=100.44 Aligned_cols=115 Identities=14% Similarity=0.142 Sum_probs=88.2
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC---------------------------------------C
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------------H 92 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~---------------------------------------~ 92 (759)
.+...+...... .++..|||++||+|.++..++..+. .
T Consensus 181 ~LAaall~l~~~---~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 257 (384)
T 3ldg_A 181 NMAAAIILLSNW---FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL 257 (384)
T ss_dssp HHHHHHHHHTTC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHhCC---CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence 444445555443 5678999999999999988876432 2
Q ss_pred eEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC--CcccEEEeCCCC------hhHHHHHHHHHHHhccc--Cc
Q 004354 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--GGLDALMEPELG------HKLGNQYLSEVKRLLKS--GG 160 (759)
Q Consensus 93 ~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~--gtfD~Ii~~~~~------~~~~~~~l~ei~rvLkp--GG 160 (759)
.|+|+|+|+.+++.|++++...+ ..++|.++|+.+++ ..||+|+++... ......+.+++.+.||+ ||
T Consensus 258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~ 337 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTW 337 (384)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTS
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCc
Confidence 49999999999999999876544 35899999999887 789999998632 23367777788888876 99
Q ss_pred EEEEEEcCc
Q 004354 161 KFVCLTLAE 169 (759)
Q Consensus 161 ~liiit~~~ 169 (759)
.+++++-..
T Consensus 338 ~~~iit~~~ 346 (384)
T 3ldg_A 338 SQFILTNDT 346 (384)
T ss_dssp EEEEEESCT
T ss_pred EEEEEECCH
Confidence 999888643
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-07 Score=93.31 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=99.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||.|.|.++..+.... |..++++||+++.+++.|++.+.-..-++++++.+|+.++ .
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~---------- 101 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKI----P---------- 101 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBC----S----------
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccC----C----------
Confidence 345799999999999988888876 6779999999999999999987211123799999996542 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCCh----
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ---- 682 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~---- 682 (759)
..+.+||+|+.... ...+ + -...+|+.+.+.|+|||.+++..+....
T Consensus 102 -------------------~~~~~fD~v~~~~~----l~~~---~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 152 (219)
T 3dh0_A 102 -------------------LPDNTVDFIFMAFT----FHEL---S---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKG 152 (219)
T ss_dssp -------------------SCSSCEEEEEEESC----GGGC---S---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS
T ss_pred -------------------CCCCCeeEEEeehh----hhhc---C---CHHHHHHHHHHHhCCCeEEEEEEecccccccC
Confidence 11367999998321 1111 0 1278999999999999999886543221
Q ss_pred ------hHHHHHHHHHHHh-cCceEEEeecCCccEEEEEecCC
Q 004354 683 ------ATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLSSE 718 (759)
Q Consensus 683 ------~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~~~~ 718 (759)
-..+.+...+++. |..+-..... .....+++.+..
T Consensus 153 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-~~~~~~~~~k~~ 194 (219)
T 3dh0_A 153 PPPEEVYSEWEVGLILEDAGIRVGRVVEVG-KYCFGVYAMIVK 194 (219)
T ss_dssp CCGGGSCCHHHHHHHHHHTTCEEEEEEEET-TTEEEEEEECC-
T ss_pred CchhcccCHHHHHHHHHHCCCEEEEEEeeC-CceEEEEEEecc
Confidence 0134555666655 6555544433 355666666543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.4e-07 Score=100.49 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=81.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.|| |+|.++..+....|..+|++||+||.++++|++++ |+ + +++++.+|+.+++...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~--~-~v~~~~~D~~~~l~~~---------- 237 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY--E-DIEIFTFDLRKPLPDY---------- 237 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC--C-CEEEECCCTTSCCCTT----------
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--C-CEEEEEChhhhhchhh----------
Confidence 357999999 99999998888877679999999999999999986 65 3 7999999987643210
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCc-EEEEEecC
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG-LFIVNLVS 679 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~G-ilv~N~~~ 679 (759)
....||+|++|.--. +.. ...||+.+.+.|+||| ++++-+..
T Consensus 238 ---------------------~~~~fD~Vi~~~p~~---------~~~--~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 238 ---------------------ALHKFDTFITDPPET---------LEA--IRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp ---------------------TSSCBSEEEECCCSS---------HHH--HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred ---------------------ccCCccEEEECCCCc---------hHH--HHHHHHHHHHHcccCCeEEEEEEec
Confidence 024799999964110 112 3789999999999999 55666654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.55 E-value=4.3e-07 Score=91.17 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=79.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-----CCCeEEEEccHHHHHHhhcccCccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-----DKSLKVHITDGIKFVREMKSSSATD 602 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~-----~~rl~v~i~Da~~~l~~~~~~~~~~ 602 (759)
....+||.||+|.|.++..|....|..++++||+++.+++.|++.+.... .++++++.+|... ..
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~------ 97 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTY----QD------ 97 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS----CC------
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccc----cc------
Confidence 34579999999999999999998887899999999999999999974321 1389999999521 11
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEEEe
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~N~ 677 (759)
....+||+|+.. .. -..+-. ..+|+.+++.|+|||++++..
T Consensus 98 -----------------------~~~~~fD~v~~~----~~-------l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 98 -----------------------KRFHGYDAATVI----EV-------IEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp -----------------------GGGCSCSEEEEE----SC-------GGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred -----------------------ccCCCcCEEeeH----HH-------HHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 012579999972 11 111221 579999999999999887654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.55 E-value=2.2e-07 Score=97.27 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=88.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.+|.|.|.++..+... .|..++++||++|.+++.|++.+ |+ .++++++.+|+.+. ..
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~---~~------- 178 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL--IERVTIKVRDISEG---FD------- 178 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC--GGGEEEECCCGGGC---CS-------
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC--CCCEEEEECCHHHc---cc-------
Confidence 34569999999999999988888 56789999999999999999987 44 35799999997664 11
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
...||+|++|... | ..+++.+.+.|+|||.|++...+. .
T Consensus 179 ------------------------~~~~D~V~~~~~~---------~------~~~l~~~~~~L~pgG~l~~~~~~~--~ 217 (277)
T 1o54_A 179 ------------------------EKDVDALFLDVPD---------P------WNYIDKCWEALKGGGRFATVCPTT--N 217 (277)
T ss_dssp ------------------------CCSEEEEEECCSC---------G------GGTHHHHHHHEEEEEEEEEEESSH--H
T ss_pred ------------------------CCccCEEEECCcC---------H------HHHHHHHHHHcCCCCEEEEEeCCH--H
Confidence 2579999996421 1 468999999999999999877432 2
Q ss_pred HHHHHHHHHHH
Q 004354 684 TKDMVISRMKM 694 (759)
Q Consensus 684 ~~~~v~~~l~~ 694 (759)
....+.+.|++
T Consensus 218 ~~~~~~~~l~~ 228 (277)
T 1o54_A 218 QVQETLKKLQE 228 (277)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33445666655
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-07 Score=93.52 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=79.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.+|+|+|.++..+.... ..+|++||+++.+++.|++.+....-++++++.+|+.+++...
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~-------------- 119 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK-------------- 119 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC--------------
T ss_pred CCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhc--------------
Confidence 4689999999999988766553 2489999999999999999872211158999999999986432
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHH--ccCcCcEEEEEecC
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD--ALSEQGLFIVNLVS 679 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~--~L~~~Gilv~N~~~ 679 (759)
..+||+|++|.. . ..-...++++.+.+ .|+|||+|++....
T Consensus 120 ------------------~~~fD~V~~~~p---~--------~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 120 ------------------GTPHNIVFVDPP---F--------RRGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp ------------------CCCEEEEEECCS---S--------STTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred ------------------CCCCCEEEECCC---C--------CCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 257999999532 0 00123567888876 49999999977644
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.6e-07 Score=91.55 Aligned_cols=121 Identities=13% Similarity=0.047 Sum_probs=77.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
.+.+||.||.| ..+.++.+. +..+|++||.|++..+.|+++| |+...++++++++|+.+.+.-..
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~--------- 97 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGH--------- 97 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGC---------
T ss_pred CCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccc---------
Confidence 35799999985 455555553 4679999999999999999999 54225689999999765311000
Q ss_pred cccccccccCCCCCCCC---C--CCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE-EecC
Q 004354 606 VVHGNEITSNNTRSCNG---N--CTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NLVS 679 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~---~--~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~-N~~~ 679 (759)
+.+. +....... . .......||+||+|.+.. ..++..+..+|+|||++++ |+..
T Consensus 98 ---p~~~--~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~---------------~~~~~~~l~~l~~GG~Iv~DNv~~ 157 (202)
T 3cvo_A 98 ---PVSD--AKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR---------------VGCALATAFSITRPVTLLFDDYSQ 157 (202)
T ss_dssp ---BSSS--TTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH---------------HHHHHHHHHHCSSCEEEEETTGGG
T ss_pred ---cccc--hhhhhHHHHhhhhhccccCCCCCEEEEeCCCc---------------hhHHHHHHHhcCCCeEEEEeCCcC
Confidence 0000 00000000 0 000136799999987432 3567777899999999988 6544
Q ss_pred CC
Q 004354 680 RS 681 (759)
Q Consensus 680 ~~ 681 (759)
+.
T Consensus 158 r~ 159 (202)
T 3cvo_A 158 RR 159 (202)
T ss_dssp CS
T ss_pred Cc
Confidence 43
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.54 E-value=3.7e-07 Score=97.87 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=94.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.+|.|.|..+..|...++ ..+|++||+++.+++.|++.+ |+ ++++++.+|+.++.. .
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~~~-~-------- 184 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHIGE-L-------- 184 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGGGG-G--------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CeEEEEECChhhccc-c--------
Confidence 3456999999999999999998875 469999999999999999887 65 369999999876532 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--------------ChHHHHHHHHHccCc
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 669 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--------------~~~~fl~~~~~~L~~ 669 (759)
...||+|++|+..+. .|+-...+.. ....+|+.+.+.|+|
T Consensus 185 ------------------------~~~fD~Il~d~Pcsg--~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp 238 (315)
T 1ixk_A 185 ------------------------NVEFDKILLDAPCTG--SGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP 238 (315)
T ss_dssp ------------------------CCCEEEEEEECCTTS--TTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred ------------------------cccCCEEEEeCCCCC--cccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 257999999975331 1211111111 125899999999999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhcC
Q 004354 670 QGLFIVNLVSRSQATKDMVISRMKMVFN 697 (759)
Q Consensus 670 ~Gilv~N~~~~~~~~~~~v~~~l~~vF~ 697 (759)
||.|++...+......+.++..+.+-+.
T Consensus 239 GG~lv~stcs~~~~Ene~~v~~~l~~~~ 266 (315)
T 1ixk_A 239 GGILVYSTCSLEPEENEFVIQWALDNFD 266 (315)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred CCEEEEEeCCCChHHhHHHHHHHHhcCC
Confidence 9999987655544444455655544444
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.5e-07 Score=96.07 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=82.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..+... +..+|++||++|.+++.|++.+ |+ .++++++.+|+.++ .
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~----~-------- 109 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGL--QNRVTGIVGSMDDL----P-------- 109 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSC----C--------
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCC--CcCcEEEEcChhhC----C--------
Confidence 45679999999999999999888 7779999999999999999886 54 46899999997442 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
....+||+|+..- . -..+--..+|+.+++.|+|||.+++...
T Consensus 110 ---------------------~~~~~fD~i~~~~----~-------~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 110 ---------------------FRNEELDLIWSEG----A-------IYNIGFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp ---------------------CCTTCEEEEEESS----C-------GGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ---------------------CCCCCEEEEEEcC----C-------ceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 1136799999821 1 1111237899999999999999987653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-07 Score=98.35 Aligned_cols=110 Identities=13% Similarity=0.134 Sum_probs=83.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.+.+||.||+|.|.++..|... ..++++||+++.+++.|++.+.-. ..++++++.+|+.+.... .
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~----------- 133 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH-L----------- 133 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG-C-----------
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh-c-----------
Confidence 3579999999999999988887 469999999999999999987321 136899999998765321 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCCh
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 682 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~ 682 (759)
+..||+|++.- ....+ | -...+|+.+++.|+|||.|++.......
T Consensus 134 --------------------~~~fD~v~~~~----~l~~~--~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (285)
T 4htf_A 134 --------------------ETPVDLILFHA----VLEWV--A----DPRSVLQTLWSVLRPGGVLSLMFYNAHG 178 (285)
T ss_dssp --------------------SSCEEEEEEES----CGGGC--S----CHHHHHHHHHHTEEEEEEEEEEEEBHHH
T ss_pred --------------------CCCceEEEECc----hhhcc--c----CHHHHHHHHHHHcCCCeEEEEEEeCCch
Confidence 36799999831 11111 1 1167999999999999999998765543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-07 Score=98.55 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=82.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..+....|..++++||+++.+++.|++.+.-..-++++++.+|+.+..
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--------------- 100 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP--------------- 100 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC---------------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC---------------
Confidence 45679999999999999999999988999999999999999999873222247999999976531
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
....+||+|+...- ...+ |. ...+|+.+++.|+|||.+++..
T Consensus 101 ------------------~~~~~fD~v~~~~~----l~~~--~~----~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 101 ------------------FEDSSFDHIFVCFV----LEHL--QS----PEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp ------------------SCTTCEEEEEEESC----GGGC--SC----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCCeeEEEEech----hhhc--CC----HHHHHHHHHHHcCCCcEEEEEE
Confidence 11367999998321 1111 11 2589999999999999998854
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.53 E-value=7.7e-09 Score=106.77 Aligned_cols=110 Identities=11% Similarity=0.112 Sum_probs=79.4
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ- 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~- 129 (759)
+.....+...+.. .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++.. ...+++++++|+.+++
T Consensus 15 ~~~~~~i~~~~~~---~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~~~ 89 (245)
T 1yub_A 15 EKVLNQIIKQLNL---KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDILQFQF 89 (245)
T ss_dssp TTTHHHHHHHCCC---CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCTTTTC
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc-cCCceEEEECChhhcCc
Confidence 3445556566543 567899999999999999999987 569999999999987766653 3457999999998876
Q ss_pred ---CcccEEEeCCCC---hhHHHHHH--------------HHHHHhcccCcEEEEEE
Q 004354 130 ---GGLDALMEPELG---HKLGNQYL--------------SEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 130 ---gtfD~Ii~~~~~---~~~~~~~l--------------~ei~rvLkpGG~liiit 166 (759)
++| .|+++... ......++ +.+.|+|+|||.+.++.
T Consensus 90 ~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 90 PNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp CCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred ccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 468 66665311 11122222 56889999998766543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.53 E-value=5.7e-07 Score=92.83 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=59.1
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~ 129 (759)
.+...+...+.. .++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.++++... .++++++++|+.+++
T Consensus 17 ~~~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~-~~~v~~~~~D~~~~~ 89 (244)
T 1qam_A 17 HNIDKIMTNIRL---NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD-HDNFQVLNKDILQFK 89 (244)
T ss_dssp HHHHHHHTTCCC---CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT-CCSEEEECCCGGGCC
T ss_pred HHHHHHHHhCCC---CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhcc-CCCeEEEEChHHhCC
Confidence 344444444432 567899999999999999999987 4699999999999999888643 368999999998876
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.1e-07 Score=94.38 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=81.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..+....+. ++++||+++.+++.|++.+. .++++++.+|+.++ .
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~----~----------- 103 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDI----A----------- 103 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGC----C-----------
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhC----C-----------
Confidence 35689999999999999999888544 99999999999999999987 57899999997542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
.....||+|+... ....+ . --..+|+.+++.|+|||.|++.+.
T Consensus 104 ------------------~~~~~fD~v~~~~----~l~~~----~--~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 104 ------------------IEPDAYNVVLSSL----ALHYI----A--SFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp ------------------CCTTCEEEEEEES----CGGGC----S--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ------------------CCCCCeEEEEEch----hhhhh----h--hHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1136899999832 11111 0 127899999999999999998753
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-07 Score=94.88 Aligned_cols=117 Identities=19% Similarity=0.184 Sum_probs=87.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||++|.|.|.++..+... ..++++||+++.+++.|++.+ ++ +++++++.+|..+...
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 154 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNL--GKNVKFFNVDFKDAEV------------ 154 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTC--CTTEEEECSCTTTSCC------------
T ss_pred CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCC--CCcEEEEEcChhhccc------------
Confidence 4569999999999999888887 569999999999999999986 44 4679999998755310
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHH
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 685 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~ 685 (759)
....||+|+.|..+ | ..+++.+.+.|+|||.+++..... ...
T Consensus 155 ---------------------~~~~~D~v~~~~~~---------~------~~~l~~~~~~L~~gG~l~~~~~~~--~~~ 196 (248)
T 2yvl_A 155 ---------------------PEGIFHAAFVDVRE---------P------WHYLEKVHKSLMEGAPVGFLLPTA--NQV 196 (248)
T ss_dssp ---------------------CTTCBSEEEECSSC---------G------GGGHHHHHHHBCTTCEEEEEESSH--HHH
T ss_pred ---------------------CCCcccEEEECCcC---------H------HHHHHHHHHHcCCCCEEEEEeCCH--HHH
Confidence 12569999985421 1 467899999999999999877433 333
Q ss_pred HHHHHHHHHhcCce
Q 004354 686 DMVISRMKMVFNHL 699 (759)
Q Consensus 686 ~~v~~~l~~vF~~v 699 (759)
..+...+.+.|..+
T Consensus 197 ~~~~~~l~~~f~~~ 210 (248)
T 2yvl_A 197 IKLLESIENYFGNL 210 (248)
T ss_dssp HHHHHHSTTTEEEE
T ss_pred HHHHHHHHhhCCcc
Confidence 44555555445543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-07 Score=94.44 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=81.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..+....+. +|++||+++.+++.|++.+ |+ .++++++.+|+.++ .
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~----~-------- 109 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANC--ADRVKGITGSMDNL----P-------- 109 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSC----S--------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECChhhC----C--------
Confidence 34569999999999999999999875 9999999999999999886 44 56799999997432 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+..||+|+..- . + .++--..+|+.+++.|+|||.+++..
T Consensus 110 ---------------------~~~~~fD~v~~~~----~---l----~~~~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 110 ---------------------FQNEELDLIWSEG----A---I----YNIGFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp ---------------------SCTTCEEEEEEES----C---S----CCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ---------------------CCCCCEEEEEecC----h---H----hhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence 1136899999842 1 1 11123689999999999999998765
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.52 E-value=4.4e-07 Score=104.45 Aligned_cols=161 Identities=10% Similarity=0.092 Sum_probs=108.7
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh----C---------------CCeEEEEeCCHHHHHH
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G---------------FHGITNVDFSKVVISD 106 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~----G---------------~~~VtgIDiS~~~I~~ 106 (759)
+|.+ ..+...+.+.+.. .++.+|||+|||+|.++..+++. + ..+++|+|+++.+++.
T Consensus 151 fyTP-~~iv~~mv~~l~p---~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~l 226 (541)
T 2ar0_A 151 YFTP-RPLIKTIIHLLKP---QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 226 (541)
T ss_dssp CCCC-HHHHHHHHHHHCC---CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred eeCC-HHHHHHHHHHhcc---CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHH
Confidence 4433 4455666677654 56789999999999999887653 1 1259999999999999
Q ss_pred HHHHhccCC-CC-----cEEEEeecccCC----CcccEEEeCCCCh----------------hHHHHHHHHHHHhcccCc
Q 004354 107 MLRRNVRDR-SD-----MRWRVMDMTSMQ----GGLDALMEPELGH----------------KLGNQYLSEVKRLLKSGG 160 (759)
Q Consensus 107 a~~r~~~~~-~~-----i~f~~~D~~~~~----gtfD~Ii~~~~~~----------------~~~~~~l~ei~rvLkpGG 160 (759)
|+.++.-.+ .. ..+.++|....+ +.||+|++++... .....++..+.+.|+|||
T Consensus 227 A~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG 306 (541)
T 2ar0_A 227 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG 306 (541)
T ss_dssp HHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred HHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCC
Confidence 887764333 22 788999986543 6899999975211 112478999999999999
Q ss_pred EEEEEEcCc--------hhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCC
Q 004354 161 KFVCLTLAE--------SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 213 (759)
Q Consensus 161 ~liiit~~~--------~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~ 213 (759)
++.++.... ..+++.++.. ++...+..++..--...+.+..+++++|.+.
T Consensus 307 r~a~V~p~~~L~~~~~~~~iR~~L~~~---~~l~~ii~Lp~~~F~~t~v~t~Ilvl~k~~~ 364 (541)
T 2ar0_A 307 RAAVVVPDNVLFEGGKGTDIRRDLMDK---CHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 364 (541)
T ss_dssp EEEEEEEHHHHHCCTHHHHHHHHHHHH---EEEEEEEECCSSCSSSCSCCEEEEEEEEBCS
T ss_pred EEEEEecCcceecCcHHHHHHHHHhhc---CCEEEEEEcCcCcccCCCCcEEEEEEECCCC
Confidence 999886321 1233444433 2333444444422234567889999998764
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.51 E-value=6e-07 Score=93.39 Aligned_cols=74 Identities=11% Similarity=0.198 Sum_probs=61.9
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~ 129 (759)
+.+...+...+.. .++.+|||||||+|.++..|++.+ .+|+++|+++.+++.++++... .++++++++|+.+++
T Consensus 15 ~~i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~-~~~v~~i~~D~~~~~ 88 (255)
T 3tqs_A 15 SFVLQKIVSAIHP---QKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ-QKNITIYQNDALQFD 88 (255)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT-CTTEEEEESCTTTCC
T ss_pred HHHHHHHHHhcCC---CCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh-CCCcEEEEcchHhCC
Confidence 3455556666654 577899999999999999999887 5699999999999999988754 568999999999876
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.6e-07 Score=90.90 Aligned_cols=120 Identities=15% Similarity=0.222 Sum_probs=86.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..+... +..++++||+++.+++.|++.+....-++++++.+|+.++.
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------------- 122 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--------------- 122 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC---------------
T ss_pred cCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC---------------
Confidence 34579999999999999988875 66799999999999999999873211223999999975531
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
..+||+|+.+. +.+. -..+++.+.+.|+|||.+++...... ..+.
T Consensus 123 --------------------~~~fD~i~~~~------------~~~~-~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~ 167 (205)
T 3grz_A 123 --------------------DGKFDLIVANI------------LAEI-LLDLIPQLDSHLNEDGQVIFSGIDYL--QLPK 167 (205)
T ss_dssp --------------------CSCEEEEEEES------------CHHH-HHHHGGGSGGGEEEEEEEEEEEEEGG--GHHH
T ss_pred --------------------CCCceEEEECC------------cHHH-HHHHHHHHHHhcCCCCEEEEEecCcc--cHHH
Confidence 25799999953 1111 26789999999999999998643332 2334
Q ss_pred HHHHHHHh-cCc
Q 004354 688 VISRMKMV-FNH 698 (759)
Q Consensus 688 v~~~l~~v-F~~ 698 (759)
+...+.+. |..
T Consensus 168 ~~~~~~~~Gf~~ 179 (205)
T 3grz_A 168 IEQALAENSFQI 179 (205)
T ss_dssp HHHHHHHTTEEE
T ss_pred HHHHHHHcCCce
Confidence 45555544 443
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.2e-07 Score=92.81 Aligned_cols=105 Identities=13% Similarity=0.196 Sum_probs=81.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..+... ..+|++||+++.+++.|++. ++++.+|+.+++....
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~----------- 98 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLP----------- 98 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSC-----------
T ss_pred cCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcC-----------
Confidence 34579999999999999988887 45899999999999999876 7899999999875543
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
+.+||+|+.- .....+ +++ --..+|+.+++.|+|||.|++......
T Consensus 99 --------------------~~~fD~i~~~----~~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 99 --------------------DKYLDGVMIS----HFVEHL--DPE--RLFELLSLCYSKMKYSSYIVIESPNPT 144 (240)
T ss_dssp --------------------TTCBSEEEEE----SCGGGS--CGG--GHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred --------------------CCCeeEEEEC----CchhhC--CcH--HHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 3689999982 111111 111 116899999999999999998876543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.4e-07 Score=102.83 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=100.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.+|.|.|..+..|...+++ ..|++||+++..++.+++.. |+ .++.++.+|+.++.....
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~---~nv~v~~~Da~~l~~~~~------- 173 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV---SNAIVTNHAPAELVPHFS------- 173 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC---SSEEEECCCHHHHHHHHT-------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhhhcc-------
Confidence 34579999999999999989887654 69999999999999999875 66 359999999998865432
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--------------ChHHHHHHHHHccCc
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 669 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--------------~~~~fl~~~~~~L~~ 669 (759)
..||+|++|+-.+. .|+-...+.. +..++|..+.+.|+|
T Consensus 174 -------------------------~~FD~Il~DaPCSg--~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp 226 (456)
T 3m4x_A 174 -------------------------GFFDRIVVDAPCSG--EGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN 226 (456)
T ss_dssp -------------------------TCEEEEEEECCCCC--GGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE
T ss_pred -------------------------ccCCEEEECCCCCC--ccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57999999985432 1221111110 234889999999999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhcC
Q 004354 670 QGLFIVNLVSRSQATKDMVISRMKMVFN 697 (759)
Q Consensus 670 ~Gilv~N~~~~~~~~~~~v~~~l~~vF~ 697 (759)
||.|++...+...+..+.++..+.+-++
T Consensus 227 GG~LvYsTCs~~~eEne~vv~~~l~~~~ 254 (456)
T 3m4x_A 227 KGQLIYSTCTFAPEENEEIISWLVENYP 254 (456)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred CcEEEEEEeecccccCHHHHHHHHHhCC
Confidence 9999998776666666677777766665
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.5e-07 Score=93.38 Aligned_cols=121 Identities=16% Similarity=0.155 Sum_probs=89.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.+|+|.|.++..+....+ ++++||+||.+++.|++.+....-+ ++++.+|+.+.+ .
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~---~----------- 181 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAAL---P----------- 181 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHG---G-----------
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcC---c-----------
Confidence 3457999999999999998888644 9999999999999999987321112 899999988753 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
..+||+|+.+... + .-..++..+.+.|+|||.+++.-.... ..+.
T Consensus 182 --------------------~~~fD~Vv~n~~~------------~-~~~~~l~~~~~~LkpgG~lils~~~~~--~~~~ 226 (254)
T 2nxc_A 182 --------------------FGPFDLLVANLYA------------E-LHAALAPRYREALVPGGRALLTGILKD--RAPL 226 (254)
T ss_dssp --------------------GCCEEEEEEECCH------------H-HHHHHHHHHHHHEEEEEEEEEEEEEGG--GHHH
T ss_pred --------------------CCCCCEEEECCcH------------H-HHHHHHHHHHHHcCCCCEEEEEeeccC--CHHH
Confidence 1569999985311 1 126799999999999999998643332 2345
Q ss_pred HHHHHHHh-cCceE
Q 004354 688 VISRMKMV-FNHLF 700 (759)
Q Consensus 688 v~~~l~~v-F~~v~ 700 (759)
+.+.+++. |.-+.
T Consensus 227 v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 227 VREAMAGAGFRPLE 240 (254)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHHCCCEEEE
Confidence 66677665 65443
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.51 E-value=7.9e-07 Score=89.59 Aligned_cols=140 Identities=15% Similarity=0.121 Sum_probs=89.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHH----HHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTML----NLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~----~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.||+|+|.++..|....+..+|++||++|.++ +.|++. +++.++.+|+.+......
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~------~~v~~~~~d~~~~~~~~~------- 122 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER------NNIIPLLFDASKPWKYSG------- 122 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC------SSEEEECSCTTCGGGTTT-------
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC------CCeEEEEcCCCCchhhcc-------
Confidence 345689999999999999999888766999999999865 444432 357888888654210000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC---
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR--- 680 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~--- 680 (759)
. ...||+|++|+.. + -....+++.+++.|+|||.|++.+..+
T Consensus 123 ----------------------~-~~~fD~V~~~~~~----------~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 167 (210)
T 1nt2_A 123 ----------------------I-VEKVDLIYQDIAQ----------K--NQIEILKANAEFFLKEKGEVVIMVKARSID 167 (210)
T ss_dssp ----------------------T-CCCEEEEEECCCS----------T--THHHHHHHHHHHHEEEEEEEEEEEEHHHHC
T ss_pred ----------------------c-ccceeEEEEeccC----------h--hHHHHHHHHHHHHhCCCCEEEEEEecCCcc
Confidence 0 2579999997411 1 112346899999999999999875221
Q ss_pred ---C-hhHHHHHHHHHHHhcCceEEEeecC--CccEEEEEe
Q 004354 681 ---S-QATKDMVISRMKMVFNHLFCLQLEE--DVNLVLFGL 715 (759)
Q Consensus 681 ---~-~~~~~~v~~~l~~vF~~v~~~~~~~--~~N~Vl~a~ 715 (759)
+ .+.....++.+++.|.-+-...... ..+.++++.
T Consensus 168 ~~~~~~~~~~~~~~~l~~~f~~~~~~~~~p~~~~h~~~~~~ 208 (210)
T 1nt2_A 168 STAEPEEVFKSVLKEMEGDFKIVKHGSLMPYHRDHIFIHAY 208 (210)
T ss_dssp TTSCHHHHHHHHHHHHHTTSEEEEEEECTTTCTTEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhhcEEeeeecCCCCCCCcEEEEEE
Confidence 1 1222223455666666555544422 234555554
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2e-07 Score=98.80 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=68.2
Q ss_pred CCCCCeEEEECCC------cchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEE-EEeecccCC--CcccE
Q 004354 66 SSPPPQILVPGCG------NSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRW-RVMDMTSMQ--GGLDA 134 (759)
Q Consensus 66 ~~~~~~ILDlGCG------~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f-~~~D~~~~~--gtfD~ 134 (759)
..++.+|||+||| +|. ..+++. + -..|+|+|+|+. . ++++| +++|+++++ ++||+
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v----~~v~~~i~gD~~~~~~~~~fD~ 126 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V----SDADSTLIGDCATVHTANKWDL 126 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B----CSSSEEEESCGGGCCCSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C----CCCEEEEECccccCCccCcccE
Confidence 3678899999994 476 333333 3 246999999996 1 36889 999999876 78999
Q ss_pred EEeCCCCh-------------hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 135 LMEPELGH-------------KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 135 Ii~~~~~~-------------~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
|+++...+ .....+++++.++|||||+|++..+..
T Consensus 127 Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 127 IISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp EEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred EEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 99963211 225689999999999999999977654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.1e-07 Score=92.20 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=79.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-----CCCeEEEEccHHHHHHhhcccCccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-----DKSLKVHITDGIKFVREMKSSSATD 602 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~-----~~rl~v~i~Da~~~l~~~~~~~~~~ 602 (759)
..+.+||.||+|.|.++..|....|..++++||+++.+++.|++.+.... .++++++.+|+.. ..
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~------ 97 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY----RD------ 97 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS----CC------
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc----cc------
Confidence 35579999999999999999998887899999999999999999874211 1389999999621 11
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEEEe
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~N~ 677 (759)
....+||+|+.. +. -..+-+ ..+|+.+++.|+|||+++...
T Consensus 98 -----------------------~~~~~fD~V~~~----~~-------l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 98 -----------------------KRFSGYDAATVI----EV-------IEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp -----------------------GGGTTCSEEEEE----SC-------GGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred -----------------------cccCCCCEEEEH----HH-------HHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 013679999972 11 122222 479999999999999877643
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.8e-07 Score=97.87 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=82.0
Q ss_pred CCCCeEEEEcccccHHHHHHH-HhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~-~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
....+||.||+|.|.....|. ...|..+|++||+++.+++.|++.+.-. ..++++++.+|+.+. .
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--------- 183 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL----D--------- 183 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC----C---------
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC----C---------
Confidence 456799999999999988874 5668889999999999999999988321 246799999997763 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
. ...||+|+... ....+ +..-....+++.+++.|+|||.|++..+.+
T Consensus 184 --------------------~-~~~fD~v~~~~----~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 184 --------------------T-REGYDLLTSNG----LNIYE---PDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp --------------------C-CSCEEEEECCS----SGGGC---CCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred --------------------c-cCCeEEEEECC----hhhhc---CCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 1 26799999721 00000 111111248999999999999999877543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=3e-07 Score=97.33 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=42.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 573 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F 573 (759)
...+||.||+|.|.++..|...++..+|++||+|+.+++.|++..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~ 90 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNI 90 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHH
Confidence 467999999999999999999998889999999999999999886
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-06 Score=84.10 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=87.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
+...+||.||.|.|.++..+... ..++++||+++.+++.|++.+ ++++++.+|..+. .
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~----~----------- 102 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVD----Q----------- 102 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTS----C-----------
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccC----C-----------
Confidence 45679999999999999888887 459999999999999999987 3588999986542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
.....||+|++....- ..+ +++ .-..+|+.+.+.|+|||.+++............
T Consensus 103 ------------------~~~~~~D~i~~~~~~~---~~~--~~~--~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~ 157 (195)
T 3cgg_A 103 ------------------ISETDFDLIVSAGNVM---GFL--AED--GREPALANIHRALGADGRAVIGFGAGRGWVFGD 157 (195)
T ss_dssp ------------------CCCCCEEEEEECCCCG---GGS--CHH--HHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHH
T ss_pred ------------------CCCCceeEEEECCcHH---hhc--ChH--HHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHH
Confidence 0135799999831100 000 000 126799999999999999999876554333445
Q ss_pred HHHHHHHh-cC
Q 004354 688 VISRMKMV-FN 697 (759)
Q Consensus 688 v~~~l~~v-F~ 697 (759)
+...+.+. |.
T Consensus 158 ~~~~l~~~Gf~ 168 (195)
T 3cgg_A 158 FLEVAERVGLE 168 (195)
T ss_dssp HHHHHHHHTEE
T ss_pred HHHHHHHcCCE
Confidence 55555544 44
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-06 Score=82.91 Aligned_cols=115 Identities=9% Similarity=0.047 Sum_probs=87.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.+|.|.|.++..+.. +..++++||+++.+++.|++.+....-++++++.+|+.+.+..
T Consensus 34 ~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~------------- 98 (183)
T 2yxd_A 34 NKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK------------- 98 (183)
T ss_dssp CTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG-------------
T ss_pred CCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC-------------
Confidence 3456999999999999988887 6779999999999999999987221125799999998874221
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
..||+|+++.. -.-..+++.+++. |||.+++.... ......
T Consensus 99 ---------------------~~~D~i~~~~~--------------~~~~~~l~~~~~~--~gG~l~~~~~~--~~~~~~ 139 (183)
T 2yxd_A 99 ---------------------LEFNKAFIGGT--------------KNIEKIIEILDKK--KINHIVANTIV--LENAAK 139 (183)
T ss_dssp ---------------------CCCSEEEECSC--------------SCHHHHHHHHHHT--TCCEEEEEESC--HHHHHH
T ss_pred ---------------------CCCcEEEECCc--------------ccHHHHHHHHhhC--CCCEEEEEecc--cccHHH
Confidence 46999999432 1236799999988 99999987743 333445
Q ss_pred HHHHHHHhc
Q 004354 688 VISRMKMVF 696 (759)
Q Consensus 688 v~~~l~~vF 696 (759)
+.+.+++..
T Consensus 140 ~~~~l~~~g 148 (183)
T 2yxd_A 140 IINEFESRG 148 (183)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 677777664
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.3e-07 Score=96.37 Aligned_cols=105 Identities=8% Similarity=0.026 Sum_probs=77.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-----------------CCCCCeEEEEccHHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-----------------TQDKSLKVHITDGIKF 591 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-----------------~~~~rl~v~i~Da~~~ 591 (759)
...+||++|+|.|.++.+|... ..+|++||++|.+++.|++..++ ....+++++++|+.+.
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4579999999999999999887 35999999999999999887654 1246899999997664
Q ss_pred HHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCc
Q 004354 592 VREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG 671 (759)
Q Consensus 592 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~G 671 (759)
-.. ....||+|+. . .....+ |++ ....+++.+.+.|+|||
T Consensus 146 ~~~--------------------------------~~~~FD~V~~-~---~~l~~l--~~~--~~~~~l~~~~~~LkpGG 185 (252)
T 2gb4_A 146 PRA--------------------------------NIGKFDRIWD-R---GALVAI--NPG--DHDRYADIILSLLRKEF 185 (252)
T ss_dssp GGG--------------------------------CCCCEEEEEE-S---SSTTTS--CGG--GHHHHHHHHHHTEEEEE
T ss_pred Ccc--------------------------------cCCCEEEEEE-h---hhhhhC--CHH--HHHHHHHHHHHHcCCCe
Confidence 211 0257999985 1 111112 211 23579999999999999
Q ss_pred EEEE
Q 004354 672 LFIV 675 (759)
Q Consensus 672 ilv~ 675 (759)
.|++
T Consensus 186 ~l~l 189 (252)
T 2gb4_A 186 QYLV 189 (252)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9863
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-07 Score=97.80 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=92.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|+|.|.++..+....+..+|++||++|.+++.|++.+....-+++.++.+|+.++ ..
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~-------------- 183 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL-------------- 183 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--------------
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--------------
Confidence 457999999999999999999877779999999999999999987332224688999998775 22
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCCh---hHH
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ---ATK 685 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~---~~~ 685 (759)
..+||+|++|.. . --.+++..+.+.|+|||++++....... ...
T Consensus 184 -------------------~~~~D~Vi~d~p------------~--~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~ 230 (272)
T 3a27_A 184 -------------------KDVADRVIMGYV------------H--KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERP 230 (272)
T ss_dssp -------------------TTCEEEEEECCC------------S--SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHH
T ss_pred -------------------cCCceEEEECCc------------c--cHHHHHHHHHHHcCCCCEEEEEEcCccccccccH
Confidence 257999999642 1 2256899999999999999987765422 334
Q ss_pred HHHHHHHHHhcC
Q 004354 686 DMVISRMKMVFN 697 (759)
Q Consensus 686 ~~v~~~l~~vF~ 697 (759)
...+..+.+.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (272)
T 3a27_A 231 IERLKFYAEKNG 242 (272)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 455667776554
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=93.36 Aligned_cols=103 Identities=9% Similarity=0.007 Sum_probs=74.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeEEEEccHHHHHHhh
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREM 595 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~------------~~~rl~v~i~Da~~~l~~~ 595 (759)
+...+||.+|+|+|..+.+|... ..+|++||+++.+++.|++..+.. ...+++++++|+.+.-...
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 34579999999999999999887 359999999999999999987541 1357999999976542110
Q ss_pred cccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcE
Q 004354 596 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGL 672 (759)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gi 672 (759)
..+||+|+.-. ....+ +.. ....+++.+++.|+|||.
T Consensus 99 --------------------------------~~~fD~v~~~~----~l~~l---~~~-~~~~~l~~~~r~LkpgG~ 135 (203)
T 1pjz_A 99 --------------------------------IGHCAAFYDRA----AMIAL---PAD-MRERYVQHLEALMPQACS 135 (203)
T ss_dssp --------------------------------HHSEEEEEEES----CGGGS---CHH-HHHHHHHHHHHHSCSEEE
T ss_pred --------------------------------CCCEEEEEECc----chhhC---CHH-HHHHHHHHHHHHcCCCcE
Confidence 04699998511 11111 110 124589999999999997
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.7e-07 Score=93.67 Aligned_cols=103 Identities=15% Similarity=0.092 Sum_probs=80.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.||+|+|.++..|....+ ++++||+++.+++.|++.+.- +++++.+|+.+. ..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~---~~------------ 100 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKD----GITYIHSRFEDA---QL------------ 100 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC---CC------------
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc---Cc------------
Confidence 456899999999999999988754 899999999999999999752 799999997664 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHH-HccCcCcEEEEEecCCC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVK-DALSEQGLFIVNLVSRS 681 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~-~~L~~~Gilv~N~~~~~ 681 (759)
+..||+|++-- ...-+. -...+|+.++ +.|+|||.|++......
T Consensus 101 -------------------~~~fD~v~~~~----~l~~~~------~~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 101 -------------------PRRYDNIVLTH----VLEHID------DPVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp -------------------SSCEEEEEEES----CGGGCS------SHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred -------------------CCcccEEEEhh----HHHhhc------CHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 36799999721 111111 1268999999 99999999998875543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-06 Score=86.69 Aligned_cols=139 Identities=15% Similarity=0.051 Sum_probs=95.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.||+|.|.++..|... ..++++||+++.+++.|++.+ ++++++.+|+.++- ..
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~--~~------------- 99 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH-----PSVTFHHGTITDLS--DS------------- 99 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGG--GS-------------
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC-----CCCeEEeCcccccc--cC-------------
Confidence 579999999999999988887 459999999999999999984 36899999986641 11
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCCh-------
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ------- 682 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~------- 682 (759)
+.+||+|+..- ....+ |+. --..+|+.+++.|+|||.+++.......
T Consensus 100 ------------------~~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~ 153 (203)
T 3h2b_A 100 ------------------PKRWAGLLAWY----SLIHM--GPG--ELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHP 153 (203)
T ss_dssp ------------------CCCEEEEEEES----SSTTC--CTT--THHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCS
T ss_pred ------------------CCCeEEEEehh----hHhcC--CHH--HHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhch
Confidence 36899999832 11111 111 1268999999999999999988755432
Q ss_pred ------hHHHHHHHHHHHh-cCceEEEeecCCccEEEEEec
Q 004354 683 ------ATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLS 716 (759)
Q Consensus 683 ------~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~~ 716 (759)
...+.+.+.+++. |.-+............+...+
T Consensus 154 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~~l~~~~ 194 (203)
T 3h2b_A 154 VATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTAEA 194 (203)
T ss_dssp SSCEEECCHHHHHHHHHHTTEEEEEEEECTTSSEEEEEEEE
T ss_pred hhhhccCCHHHHHHHHHHCCCcEEEEEecCCCcchhhhhhh
Confidence 1234455556554 554444443343344444443
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=9.4e-07 Score=88.39 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=92.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..|.... .++++||+++.+++.|++.+.- .++++++.+|+.++.
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~--------------- 110 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKR--WSHISWAATDILQFS--------------- 110 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTT--CSSEEEEECCTTTCC---------------
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhccc--CCCeEEEEcchhhCC---------------
Confidence 455799999999999999998874 5999999999999999999853 358999999976542
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh----HHHHHHHHHccCcCcEEEEEecCC---
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVNLVSR--- 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~----~~fl~~~~~~L~~~Gilv~N~~~~--- 680 (759)
...+||+|+.. .. -.++-+ ..+|+.+.+.|+|||.|++.....
T Consensus 111 -------------------~~~~fD~v~~~----~~-------l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 160 (216)
T 3ofk_A 111 -------------------TAELFDLIVVA----EV-------LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATC 160 (216)
T ss_dssp -------------------CSCCEEEEEEE----SC-------GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred -------------------CCCCccEEEEc----cH-------HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcc
Confidence 13679999983 11 112222 467999999999999999865221
Q ss_pred ----ChhHHHHHHHHHHHhcCceEEEee
Q 004354 681 ----SQATKDMVISRMKMVFNHLFCLQL 704 (759)
Q Consensus 681 ----~~~~~~~v~~~l~~vF~~v~~~~~ 704 (759)
.....+.+...+...|..+-.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 188 (216)
T 3ofk_A 161 RRWGHVAGAETVITILTEALTEVERVQC 188 (216)
T ss_dssp HHTTCSCCHHHHHHHHHHHSEEEEEEEE
T ss_pred hhhhhhhhHHHHHHHHHhhccceEEEec
Confidence 112234456667777776554443
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-06 Score=92.30 Aligned_cols=100 Identities=18% Similarity=0.239 Sum_probs=79.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..+.+.+|..+++++|+ |.+++.|++.+ ++ .+|++++.+|..+ ...
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l--~~~v~~~~~d~~~---~~p-------- 266 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL--ADRCEILPGDFFE---TIP-------- 266 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTTT---CCC--------
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc--CCceEEeccCCCC---CCC--------
Confidence 4568999999999999999999999999999999 99999999987 44 5789999999651 111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChH---HHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG---SFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~---~fl~~~~~~L~~~Gilv~N 676 (759)
..||+|++- .. -..+-+. .+|+.+++.|+|||.|++.
T Consensus 267 ------------------------~~~D~v~~~----~v-------lh~~~d~~~~~~L~~~~~~L~pgG~l~i~ 306 (369)
T 3gwz_A 267 ------------------------DGADVYLIK----HV-------LHDWDDDDVVRILRRIATAMKPDSRLLVI 306 (369)
T ss_dssp ------------------------SSCSEEEEE----SC-------GGGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred ------------------------CCceEEEhh----hh-------hccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 269999981 10 1122223 5999999999999988774
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=9.5e-07 Score=92.72 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=67.3
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ- 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~- 129 (759)
+.+...+...+.. .++ +|||||||+|.++..|++.+. +|+++|+++.+++.++++.. ..+++++++|+.+++
T Consensus 33 ~~i~~~Iv~~~~~---~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~--~~~v~vi~~D~l~~~~ 105 (271)
T 3fut_A 33 EAHLRRIVEAARP---FTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLS--GLPVRLVFQDALLYPW 105 (271)
T ss_dssp HHHHHHHHHHHCC---CCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTT--TSSEEEEESCGGGSCG
T ss_pred HHHHHHHHHhcCC---CCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC--CCCEEEEECChhhCCh
Confidence 3455556666654 567 999999999999999999975 59999999999999988874 357999999998886
Q ss_pred ---CcccEEEeCC
Q 004354 130 ---GGLDALMEPE 139 (759)
Q Consensus 130 ---gtfD~Ii~~~ 139 (759)
..+|.|+++-
T Consensus 106 ~~~~~~~~iv~Nl 118 (271)
T 3fut_A 106 EEVPQGSLLVANL 118 (271)
T ss_dssp GGSCTTEEEEEEE
T ss_pred hhccCccEEEecC
Confidence 3689888864
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-07 Score=93.66 Aligned_cols=103 Identities=12% Similarity=0.111 Sum_probs=79.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..|...+ ..++++||++|.+++.|++.+ |+ .++++++.+|+.+..
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~v~~~~~d~~~~~------------ 99 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGV--SERVHFIHNDAAGYV------------ 99 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCCTTCC------------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEECChHhCC------------
Confidence 345799999999999999998887 459999999999999999886 54 468999999975531
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
. +..||+|+.- ..- ..+ + --..+|+.+++.|+|||.|++..
T Consensus 100 ---------------------~-~~~fD~V~~~-~~~---~~~---~---~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 100 ---------------------A-NEKCDVAACV-GAT---WIA---G---GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp ---------------------C-SSCEEEEEEE-SCG---GGT---S---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---------------------c-CCCCCEEEEC-CCh---Hhc---C---CHHHHHHHHHHHcCCCeEEEEec
Confidence 0 2579999971 111 001 1 12789999999999999988754
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-07 Score=90.95 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=78.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|.|.++..|... ..+|++||+++.+++.|++.+.-..-++++++.+|+.+....
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~------------- 140 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA------------- 140 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-------------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc-------------
Confidence 45679999999999999988888 469999999999999999987321124799999998764221
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
...||+|+++..-. .+. ..+.+.|+|||.|++.+..
T Consensus 141 --------------------~~~~D~i~~~~~~~-----------~~~-----~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 --------------------RAPFDAIIVTAAPP-----------EIP-----TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp --------------------GCCEEEEEESSBCS-----------SCC-----THHHHTEEEEEEEEEEECS
T ss_pred --------------------CCCccEEEEccchh-----------hhh-----HHHHHhcccCcEEEEEEcC
Confidence 25799999963221 111 2578999999999999865
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.8e-07 Score=97.00 Aligned_cols=117 Identities=10% Similarity=0.045 Sum_probs=88.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.+|+|+|.++..+....+. +|++||++|.+++.|++.. |+ +++++++.+|+.++..
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~--~~~v~~~~~D~~~~~~------------ 189 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKV--EDRMSAYNMDNRDFPG------------ 189 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCTTTCCC------------
T ss_pred CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCC--CceEEEEECCHHHhcc------------
Confidence 3579999999999999999888655 8999999999999999987 44 4579999999876632
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC----C
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR----S 681 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~----~ 681 (759)
..+||+|++|. |. ...+++..+.+.|+|||+|++-.... .
T Consensus 190 ----------------------~~~fD~Vi~~~------------p~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 233 (278)
T 2frn_A 190 ----------------------ENIADRILMGY------------VV--RTHEFIPKALSIAKDGAIIHYHNTVPEKLMP 233 (278)
T ss_dssp ----------------------CSCEEEEEECC------------CS--SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT
T ss_pred ----------------------cCCccEEEECC------------ch--hHHHHHHHHHHHCCCCeEEEEEEeecccccc
Confidence 25799999953 21 12678999999999999998755432 1
Q ss_pred hhHHHHHHHHHHHhc
Q 004354 682 QATKDMVISRMKMVF 696 (759)
Q Consensus 682 ~~~~~~v~~~l~~vF 696 (759)
....+.+...+.+..
T Consensus 234 ~~~~~~i~~~~~~~G 248 (278)
T 2frn_A 234 REPFETFKRITKEYG 248 (278)
T ss_dssp TTTHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHcC
Confidence 333445555555543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.47 E-value=6.8e-07 Score=93.32 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=88.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc----C-CCCCCCeEEEEccHHHHHHhhcccCcc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF----G-FTQDKSLKVHITDGIKFVREMKSSSAT 601 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~F----g-l~~~~rl~v~i~Da~~~l~~~~~~~~~ 601 (759)
....+||.+|+|.|.++..|... .|..++++||+++.+++.|++.+ | + .++++++.+|+.+.. .
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~--~~~v~~~~~d~~~~~--~------ 167 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP--PDNWRLVVSDLADSE--L------ 167 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC--CTTEEEECSCGGGCC--C------
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC--CCcEEEEECchHhcC--C------
Confidence 34569999999999999888885 46789999999999999999986 3 2 357999999976531 1
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 602 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
....||+|++|+... .++++.+.+.|+|||.+++...+.
T Consensus 168 -------------------------~~~~~D~v~~~~~~~---------------~~~l~~~~~~L~pgG~l~~~~~~~- 206 (280)
T 1i9g_A 168 -------------------------PDGSVDRAVLDMLAP---------------WEVLDAVSRLLVAGGVLMVYVATV- 206 (280)
T ss_dssp -------------------------CTTCEEEEEEESSCG---------------GGGHHHHHHHEEEEEEEEEEESSH-
T ss_pred -------------------------CCCceeEEEECCcCH---------------HHHHHHHHHhCCCCCEEEEEeCCH-
Confidence 135799999965311 368999999999999999987543
Q ss_pred hhHHHHHHHHHHH
Q 004354 682 QATKDMVISRMKM 694 (759)
Q Consensus 682 ~~~~~~v~~~l~~ 694 (759)
.....++..+++
T Consensus 207 -~~~~~~~~~l~~ 218 (280)
T 1i9g_A 207 -TQLSRIVEALRA 218 (280)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHh
Confidence 333455666665
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.7e-07 Score=85.41 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=88.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHH--HhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFV--REMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l--~~~~~~~~~~~~ 604 (759)
....+||.+|.|.|.++..+...+ |..++++||+++ ++++ ++++++.+|..+.- +....
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~------- 82 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLE------- 82 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHH-------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhc-------
Confidence 345699999999999999888885 567999999999 6532 57999999986641 11100
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh--------HHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE--------GSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~--------~~fl~~~~~~L~~~Gilv~N 676 (759)
.....+||+|+.|..-.. . +....+ ..+++.+.+.|+|||.+++.
T Consensus 83 --------------------~~~~~~~D~i~~~~~~~~--~-----~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 135 (180)
T 1ej0_A 83 --------------------RVGDSKVQVVMSDMAPNM--S-----GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK 135 (180)
T ss_dssp --------------------HHTTCCEEEEEECCCCCC--C-----SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------cCCCCceeEEEECCCccc--c-----CCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 001357999998542110 0 010001 58999999999999999987
Q ss_pred ecCCChhHHHHHHHHHHHhcCceEEEe
Q 004354 677 LVSRSQATKDMVISRMKMVFNHLFCLQ 703 (759)
Q Consensus 677 ~~~~~~~~~~~v~~~l~~vF~~v~~~~ 703 (759)
....... ..+...++..|..+....
T Consensus 136 ~~~~~~~--~~~~~~~~~~~~~~~~~~ 160 (180)
T 1ej0_A 136 VFQGEGF--DEYLREIRSLFTKVKVRK 160 (180)
T ss_dssp EESSTTH--HHHHHHHHHHEEEEEEEC
T ss_pred EecCCcH--HHHHHHHHHhhhhEEeec
Confidence 7654332 456777888888766554
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.2e-07 Score=85.71 Aligned_cols=136 Identities=16% Similarity=0.172 Sum_probs=92.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|.|.++..+..... ++++||+++.+++.|++. .++++++.+| ....
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-----~~~~----------- 72 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK-----FDSVITLSDP-----KEIP----------- 72 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH-----CTTSEEESSG-----GGSC-----------
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-----CCCC-----------
Confidence 4556999999999999998888762 999999999999999998 3579999998 1111
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh----
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA---- 683 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~---- 683 (759)
...||+|+..- ....+ + --..+++.+++.|+|||.+++..+.....
T Consensus 73 --------------------~~~~D~v~~~~----~l~~~---~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~ 122 (170)
T 3i9f_A 73 --------------------DNSVDFILFAN----SFHDM---D---DKQHVISEVKRILKDDGRVIIIDWRKENTGIGP 122 (170)
T ss_dssp --------------------TTCEEEEEEES----CSTTC---S---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS
T ss_pred --------------------CCceEEEEEcc----chhcc---c---CHHHHHHHHHHhcCCCCEEEEEEcCccccccCc
Confidence 36799999732 11111 1 13689999999999999998875543211
Q ss_pred ------HHHHHHHHHHHhcCceEEEeecCCccEEEEEecCC
Q 004354 684 ------TKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 718 (759)
Q Consensus 684 ------~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~ 718 (759)
..+.+.+.+. -|..+...... .....+++.+..
T Consensus 123 ~~~~~~~~~~~~~~l~-Gf~~~~~~~~~-~~~~~l~~~~~~ 161 (170)
T 3i9f_A 123 PLSIRMDEKDYMGWFS-NFVVEKRFNPT-PYHFGLVLKRKT 161 (170)
T ss_dssp CGGGCCCHHHHHHHTT-TEEEEEEECSS-TTEEEEEEEECC
T ss_pred hHhhhcCHHHHHHHHh-CcEEEEccCCC-CceEEEEEecCC
Confidence 1233344444 45444444433 344555555444
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3e-07 Score=93.72 Aligned_cols=139 Identities=19% Similarity=0.192 Sum_probs=97.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||.|.|.++..|....|..+|++||+||..++.|++.. |+ +++++++.+|+.+-+..
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl--~~~i~~~~~d~l~~l~~----------- 81 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL--KEKIQVRLANGLAAFEE----------- 81 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCG-----------
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEEECchhhhccc-----------
Confidence 346899999999999999999888889999999999999999886 65 56899999998764321
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHH
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 685 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~ 685 (759)
+.+||+|++ .|| -. -+-.++|..+...|+++|.||++-... .
T Consensus 82 ----------------------~~~~D~Ivi--------aG~---Gg-~~i~~Il~~~~~~L~~~~~lVlq~~~~-~--- 123 (225)
T 3kr9_A 82 ----------------------TDQVSVITI--------AGM---GG-RLIARILEEGLGKLANVERLILQPNNR-E--- 123 (225)
T ss_dssp ----------------------GGCCCEEEE--------EEE---CH-HHHHHHHHHTGGGCTTCCEEEEEESSC-H---
T ss_pred ----------------------CcCCCEEEE--------cCC---Ch-HHHHHHHHHHHHHhCCCCEEEEECCCC-H---
Confidence 125999987 122 11 123679999999999999999987632 2
Q ss_pred HHHHHHHHHh-cCceEEEeecCC--ccEEEEEecCC
Q 004354 686 DMVISRMKMV-FNHLFCLQLEED--VNLVLFGLSSE 718 (759)
Q Consensus 686 ~~v~~~l~~v-F~~v~~~~~~~~--~N~Vl~a~~~~ 718 (759)
..+...|.+. |.-+-..-+.++ .=+|+.+.+.+
T Consensus 124 ~~vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~~~~~ 159 (225)
T 3kr9_A 124 DDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAGQ 159 (225)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESC
T ss_pred HHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeCC
Confidence 2344445443 432222222222 23566666543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.47 E-value=4.6e-07 Score=93.55 Aligned_cols=104 Identities=13% Similarity=0.235 Sum_probs=77.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..|....+ ++++||+++.+++.|++.+.-..-++++++.+|+.++ .
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l----~----------- 98 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM----P----------- 98 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC----C-----------
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC----C-----------
Confidence 4567999999999999999988864 9999999999999999987211124799999996442 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+..||+|+... ....+ | --..+|..+++.|+|||.|++-
T Consensus 99 ------------------~~~~~fD~V~~~~----~l~~~--~----d~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 99 ------------------FTDERFHIVTCRI----AAHHF--P----NPASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp ------------------SCTTCEEEEEEES----CGGGC--S----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------------CCCCCEEEEEEhh----hhHhc--C----CHHHHHHHHHHHcCCCCEEEEE
Confidence 1136799999831 11111 1 1258999999999999988874
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.5e-07 Score=90.45 Aligned_cols=104 Identities=14% Similarity=0.181 Sum_probs=81.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..|... ..++++||+++.+++.|++ .+. ++++++.+|+.++ ..
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~-~~~---~~~~~~~~d~~~~---~~----------- 104 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR-HGL---DNVEFRQQDLFDW---TP----------- 104 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG-GCC---TTEEEEECCTTSC---CC-----------
T ss_pred CCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh-cCC---CCeEEEecccccC---CC-----------
Confidence 34569999999999999999888 4699999999999999999 332 6799999997654 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEEEecCCCh
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNLVSRSQ 682 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~N~~~~~~ 682 (759)
..+||+|++.. . -.++-+ ..+|+.+++.|+|||.+++....+..
T Consensus 105 --------------------~~~~D~v~~~~----~-------l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 151 (218)
T 3ou2_A 105 --------------------DRQWDAVFFAH----W-------LAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHE 151 (218)
T ss_dssp --------------------SSCEEEEEEES----C-------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC
T ss_pred --------------------CCceeEEEEec----h-------hhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 36799999831 1 112222 67999999999999999988766643
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.45 E-value=3e-06 Score=84.84 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=77.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|.|.++..|... ..++++||+++.+++.|++.+. .+++++.+|+.++ .
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~----~------------ 102 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSF----E------------ 102 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSC----C------------
T ss_pred CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhc----C------------
Confidence 5579999999999999988887 4699999999999999999986 5789999886543 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEEEec
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
.. ..||+|+... . -..+-+ ..+|+.+++.|+|||.+++...
T Consensus 103 -----------------~~-~~fD~v~~~~----~-------l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 103 -----------------VP-TSIDTIVSTY----A-------FHHLTDDEKNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp -----------------CC-SCCSEEEEES----C-------GGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred -----------------CC-CCeEEEEECc----c-------hhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 11 5799999831 1 112222 3389999999999999998753
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.4e-07 Score=94.53 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=76.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
+...+||.||+|+|.++..|.... .+|++||+++.|++.|+++ ++++++++|+.+. .
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~------~~v~~~~~~~e~~----~----------- 94 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRH------PRVTYAVAPAEDT----G----------- 94 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCC------TTEEEEECCTTCC----C-----------
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhc------CCceeehhhhhhh----c-----------
Confidence 445789999999999999998875 5899999999999998753 5799999996432 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
..+..||+|++ .... ..+-...++..+++.|+|||+|++-...
T Consensus 95 ------------------~~~~sfD~v~~----~~~~-------h~~~~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 95 ------------------LPPASVDVAIA----AQAM-------HWFDLDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp ------------------CCSSCEEEEEE----CSCC-------TTCCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ------------------ccCCcccEEEE----eeeh-------hHhhHHHHHHHHHHHcCCCCEEEEEECC
Confidence 12478999998 2111 1122467999999999999999875543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.1e-07 Score=94.55 Aligned_cols=108 Identities=12% Similarity=0.157 Sum_probs=82.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..|...+ ..+|++||+++.+++.|++.+.-. ++++++.+|+.+. .
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~----~----------- 115 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTK----E----------- 115 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTC----C-----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccC----C-----------
Confidence 456799999999999999888876 569999999999999999998642 7899999997653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
..+.+||+|+..- ....+ |+. --..+|+.+++.|+|||.+++....
T Consensus 116 ------------------~~~~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 116 ------------------FPENNFDLIYSRD----AILAL--SLE--NKNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp ------------------CCTTCEEEEEEES----CGGGS--CHH--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ------------------CCCCcEEEEeHHH----HHHhc--ChH--HHHHHHHHHHHHcCCCCEEEEEEec
Confidence 1136899999821 11111 001 1267999999999999999887643
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.1e-06 Score=87.89 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=84.9
Q ss_pred CCCeEEEEcccc---cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH--HHhhcccCcccc
Q 004354 529 KSVKAVVIGLGA---GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDE 603 (759)
Q Consensus 529 ~~~~vLviGlG~---G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~--l~~~~~~~~~~~ 603 (759)
...+||.||+|. |.+...+....|..+|++||+||.|++.|++.+. ..++++++.+|..+. +-......
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~--~~~~v~~~~~D~~~~~~~~~~~~~~---- 150 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA--KDPNTAVFTADVRDPEYILNHPDVR---- 150 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT--TCTTEEEEECCTTCHHHHHHSHHHH----
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC--CCCCeEEEEeeCCCchhhhccchhh----
Confidence 447999999999 9888888888898999999999999999999985 357899999998753 21000000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
. .....+||+|++- . . +..-+.. --..+|+.+++.|+|||.|++.....+
T Consensus 151 -~-------------------~~d~~~~d~v~~~--~--v---lh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 151 -R-------------------MIDFSRPAAIMLV--G--M---LHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp -H-------------------HCCTTSCCEEEET--T--T---GGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred -c-------------------cCCCCCCEEEEEe--c--h---hhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 0 0011479999871 1 0 1111111 236799999999999999998876654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-07 Score=93.07 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=79.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|.|.++..+....+ ++++||++|.+++.|++.+... .++++++.+|..++ .
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~----~------------ 98 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR-ESNVEFIVGDARKL----S------------ 98 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-TCCCEEEECCTTSC----C------------
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc-CCCceEEECchhcC----C------------
Confidence 367999999999999999988865 9999999999999999987432 26799999996542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
....+||+|++.- .-... +.. --..+++.+++.|+|||.+++....
T Consensus 99 -----------------~~~~~~D~v~~~~--~~~~~----~~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 99 -----------------FEDKTFDYVIFID--SIVHF----EPL--ELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp -----------------SCTTCEEEEEEES--CGGGC----CHH--HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----------------CCCCcEEEEEEcC--chHhC----CHH--HHHHHHHHHHHHcCCCcEEEEEecC
Confidence 0135799999831 10000 000 1257999999999999999988654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.2e-07 Score=91.20 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=82.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..+....+. ++++||+++.+++.|++.+.- .++++++.+|+.+. ..
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~--~~------------ 103 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKL--DF------------ 103 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSC--CS------------
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcC--CC------------
Confidence 34579999999999999888887544 999999999999999998752 46899999997553 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcC---CCCC------ChHHHHHHHHHccCcCcEEEEEec
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP---AADF------VEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scP---p~~f------~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
.+..||+|+...-- ..+.|. +... ....+|+.+.+.|+|||.+++...
T Consensus 104 -------------------~~~~fD~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 104 -------------------PSASFDVVLEKGTL----DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp -------------------CSSCEEEEEEESHH----HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred -------------------CCCcccEEEECcch----hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 13579999963200 000000 1110 126799999999999999998876
Q ss_pred CC
Q 004354 679 SR 680 (759)
Q Consensus 679 ~~ 680 (759)
..
T Consensus 161 ~~ 162 (215)
T 2pxx_A 161 AA 162 (215)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.44 E-value=3.2e-07 Score=93.78 Aligned_cols=106 Identities=18% Similarity=0.259 Sum_probs=78.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|.|.++..|.... ..++++||+++.+++.|++.+.-....+++++.+|+.++ .
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~------------ 141 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF----T------------ 141 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC----C------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhc----C------------
Confidence 46799999999999998887765 459999999999999999998532234689999996543 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
....+||+|+++- ....+ |.+. -..+|+.+++.|+|||.|++.
T Consensus 142 -----------------~~~~~fD~v~~~~----~l~~~--~~~~--~~~~l~~~~~~LkpgG~l~i~ 184 (241)
T 2ex4_A 142 -----------------PEPDSYDVIWIQW----VIGHL--TDQH--LAEFLRRCKGSLRPNGIIVIK 184 (241)
T ss_dssp -----------------CCSSCEEEEEEES----CGGGS--CHHH--HHHHHHHHHHHEEEEEEEEEE
T ss_pred -----------------CCCCCEEEEEEcc----hhhhC--CHHH--HHHHHHHHHHhcCCCeEEEEE
Confidence 1135799999852 10001 0100 147999999999999998874
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-06 Score=89.37 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=80.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..+.... ..++++||+++.+++.|++.+ |+ .++++++.+|+.+. .
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~----~-------- 124 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGL--ANRVTFSYADAMDL----P-------- 124 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSC----C--------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEECccccC----C--------
Confidence 455799999999999999998876 569999999999999999887 44 46899999997542 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
..+..||+|+.- .....+ |. ...+|+.+++.|+|||.+++....
T Consensus 125 ---------------------~~~~~fD~v~~~----~~l~~~--~~----~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 125 ---------------------FEDASFDAVWAL----ESLHHM--PD----RGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp ---------------------SCTTCEEEEEEE----SCTTTS--SC----HHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred ---------------------CCCCCccEEEEe----chhhhC--CC----HHHHHHHHHHHcCCCeEEEEEEee
Confidence 113679999972 111111 11 278999999999999988876543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=87.09 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=79.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+.+||.||+|.|.++..|... ..++++||+++.+++.|++. .++.++.+|..++.....
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~----------- 111 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKV----------- 111 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCS-----------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhccccc-----------
Confidence 35589999999999999988877 45999999999999999988 457889999877632211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
....+||+|++...- . . + --..+|+.+++.|+|||.|++....
T Consensus 112 ------------------~~~~~fD~v~~~~~l----~-~--~----~~~~~l~~~~~~L~pgG~l~~~~~~ 154 (227)
T 3e8s_A 112 ------------------PVGKDYDLICANFAL----L-H--Q----DIIELLSAMRTLLVPGGALVIQTLH 154 (227)
T ss_dssp ------------------CCCCCEEEEEEESCC----C-S--S----CCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ------------------ccCCCccEEEECchh----h-h--h----hHHHHHHHHHHHhCCCeEEEEEecC
Confidence 113569999983211 0 1 1 1268999999999999999987653
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=9.3e-07 Score=97.47 Aligned_cols=136 Identities=15% Similarity=0.099 Sum_probs=92.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CC-CeEEEEccHHHHHHhhcccCcccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DK-SLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~-~~-rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+||.+|+|+|.++..+... ...+|++||+++.+++.|++.+.... ++ +++++.+|+.+++.....
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~---------- 281 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR---------- 281 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH----------
T ss_pred CCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH----------
Confidence 368999999999999988875 23489999999999999999873211 23 899999999999876531
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-ChHHHHHHHHHccCcCcEEEEEecCCChhHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 686 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~ 686 (759)
.+.+||+|++|......+.+. -...+ .-.+++..+.+.|+|||+|++...+... ..+
T Consensus 282 -------------------~~~~fD~Ii~DPP~~~~~~~~--~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~-~~~ 339 (385)
T 2b78_A 282 -------------------HHLTYDIIIIDPPSFARNKKE--VFSVSKDYHKLIRQGLEILSENGLIIASTNAANM-TVS 339 (385)
T ss_dssp -------------------TTCCEEEEEECCCCC-----C--CCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS-CHH
T ss_pred -------------------hCCCccEEEECCCCCCCChhh--HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC-CHH
Confidence 135799999975331100010 01100 0134778889999999999987754432 223
Q ss_pred HHHHHHHHhcCc
Q 004354 687 MVISRMKMVFNH 698 (759)
Q Consensus 687 ~v~~~l~~vF~~ 698 (759)
.+.+.+...+..
T Consensus 340 ~~~~~i~~~~~~ 351 (385)
T 2b78_A 340 QFKKQIEKGFGK 351 (385)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-07 Score=101.50 Aligned_cols=97 Identities=12% Similarity=0.008 Sum_probs=78.1
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccC---------------C-CCcEEEEeecccCC-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD---------------R-SDMRWRVMDMTSMQ- 129 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~---------------~-~~i~f~~~D~~~~~- 129 (759)
++.+|||+|||+|.++..++.. +...|+++|+++.+++.+++++... + .+++++++|+.+..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 3679999999999999999987 5556999999999999999887543 3 23899999987654
Q ss_pred ---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 130 ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 130 ---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+.||+|+.+... ....++..+.+.|++||.+++..
T Consensus 127 ~~~~~fD~I~lDP~~--~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPFG--SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCSS--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCCCC--CHHHHHHHHHHhcCCCCEEEEEe
Confidence 579999986532 23678899999999999766543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=8.1e-07 Score=92.11 Aligned_cols=72 Identities=7% Similarity=0.157 Sum_probs=59.3
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~ 129 (759)
.+...+...+.. .++.+|||+|||+|.++..|++.|..+|+|+|+++.+++.++++ ...+++++++|+.+++
T Consensus 18 ~i~~~iv~~~~~---~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~~~~v~~i~~D~~~~~ 89 (249)
T 3ftd_A 18 GVLKKIAEELNI---EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---GDERLEVINEDASKFP 89 (249)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---CCTTEEEECSCTTTCC
T ss_pred HHHHHHHHhcCC---CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---cCCCeEEEEcchhhCC
Confidence 455555566544 56789999999999999999998756799999999999988766 3467999999999886
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.6e-07 Score=90.48 Aligned_cols=105 Identities=14% Similarity=0.097 Sum_probs=80.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
+...+||.||.|.|.++..|... ..++++||+++.+++.|++... .++++++.+|+.+. .
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~----~----------- 111 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGE---GPDLSFIKGDLSSL----P----------- 111 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTC---BTTEEEEECBTTBC----S-----------
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcc---cCCceEEEcchhcC----C-----------
Confidence 35579999999999999988887 4599999999999999999863 57899999996543 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
..+..||+|+.-- ....+. -...+|+.+++.|+|||.+++.....
T Consensus 112 ------------------~~~~~fD~v~~~~----~l~~~~------~~~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 112 ------------------FENEQFEAIMAIN----SLEWTE------EPLRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp ------------------SCTTCEEEEEEES----CTTSSS------CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred ------------------CCCCCccEEEEcC----hHhhcc------CHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence 1136899999721 111111 12589999999999999999887544
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.41 E-value=3e-07 Score=92.95 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=79.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-----CCCcEEEEEcCHHHHHHHHhhcCCCC-----CCCeEEEEccHHHHHHhhccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECM-----PFVGIEAVELDLTMLNLAEDYFGFTQ-----DKSLKVHITDGIKFVREMKSS 598 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~-----p~~~i~~VEiDp~v~~vA~~~Fgl~~-----~~rl~v~i~Da~~~l~~~~~~ 598 (759)
...+||.||.|.|.++..+.... |..+|++||+++.+++.|++.+.-.. .++++++.+|+.+.......
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~- 158 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK- 158 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH-
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc-
Confidence 45799999999999999888876 45699999999999999999872111 35799999998774211000
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 599 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
....||+|+++.... . +++.+.+.|+|||.+++.+.
T Consensus 159 ----------------------------~~~~fD~I~~~~~~~-----------~-----~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ----------------------------ELGLFDAIHVGASAS-----------E-----LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp ----------------------------HHCCEEEEEECSBBS-----------S-----CCHHHHHHEEEEEEEEEEEE
T ss_pred ----------------------------cCCCcCEEEECCchH-----------H-----HHHHHHHhcCCCcEEEEEEc
Confidence 025699999853221 1 34788999999999999986
Q ss_pred C
Q 004354 679 S 679 (759)
Q Consensus 679 ~ 679 (759)
.
T Consensus 195 ~ 195 (227)
T 2pbf_A 195 E 195 (227)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.4e-07 Score=92.12 Aligned_cols=139 Identities=19% Similarity=0.184 Sum_probs=98.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||.|.|.++..|....|..+|++||+||..++.|++.. |+ .++++++.+|+.+.+..
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl--~~~I~~~~gD~l~~~~~----------- 87 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL--TSKIDVRLANGLSAFEE----------- 87 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCG-----------
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhhcccc-----------
Confidence 446899999999999999999877779999999999999999886 65 56899999998876422
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHH
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 685 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~ 685 (759)
+.+||+|++ .||- . -+-.++|......|+++|.||+.-... .
T Consensus 88 ----------------------~~~~D~Ivi--------aGmG---g-~lI~~IL~~~~~~l~~~~~lIlqp~~~----~ 129 (230)
T 3lec_A 88 ----------------------ADNIDTITI--------CGMG---G-RLIADILNNDIDKLQHVKTLVLQPNNR----E 129 (230)
T ss_dssp ----------------------GGCCCEEEE--------EEEC---H-HHHHHHHHHTGGGGTTCCEEEEEESSC----H
T ss_pred ----------------------ccccCEEEE--------eCCc---h-HHHHHHHHHHHHHhCcCCEEEEECCCC----h
Confidence 136999987 1221 1 123679999999999999999887543 2
Q ss_pred HHHHHHHHHh-cCceEEEeecCC--ccEEEEEecCC
Q 004354 686 DMVISRMKMV-FNHLFCLQLEED--VNLVLFGLSSE 718 (759)
Q Consensus 686 ~~v~~~l~~v-F~~v~~~~~~~~--~N~Vl~a~~~~ 718 (759)
+.+...|.+. |.-+-..-+.++ .=+|+.+.+.+
T Consensus 130 ~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~~~~~ 165 (230)
T 3lec_A 130 DDLRKWLAANDFEIVAEDILTENDKRYEILVVKHGH 165 (230)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEC--CEEEEEEEEECC
T ss_pred HHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeCC
Confidence 2344444443 432222222222 34567776654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-06 Score=99.36 Aligned_cols=132 Identities=14% Similarity=0.192 Sum_probs=95.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+|.|.|..+..|...++ ...|++||+++.+++.|++.+ |+ +++.++.+|+.++....
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~---~nv~~~~~D~~~~~~~~--------- 184 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI---SNVALTHFDGRVFGAAV--------- 184 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCCSTTHHHHS---------
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCCHHHhhhhc---------
Confidence 456999999999999999999875 469999999999999999886 65 36999999998764322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCC-cCCCCC-------------ChHHHHHHHHHccCcC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMT-CPAADF-------------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~s-cPp~~f-------------~~~~fl~~~~~~L~~~ 670 (759)
...||+|++|+..+. .|+- --|... +..++|..+.+.|+||
T Consensus 185 -----------------------~~~fD~Il~D~PcSg--~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 239 (479)
T 2frx_A 185 -----------------------PEMFDAILLDAPCSG--EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 (479)
T ss_dssp -----------------------TTCEEEEEEECCCCC--GGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred -----------------------cccCCEEEECCCcCC--cccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 257999999985432 1221 112111 1357899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhcC
Q 004354 671 GLFIVNLVSRSQATKDMVISRMKMVFN 697 (759)
Q Consensus 671 Gilv~N~~~~~~~~~~~v~~~l~~vF~ 697 (759)
|.|++-..+-.....+.++..+.+-++
T Consensus 240 G~LvysTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 240 GTLVYSTCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp EEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred CEEEEecccCCcccCHHHHHHHHHHCC
Confidence 999987655443333445555544444
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=9.7e-07 Score=90.17 Aligned_cols=101 Identities=15% Similarity=0.239 Sum_probs=77.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|+|.++..+....+ ++++||+++.+++.|++.+ |+ ++++++.+|+.++ .
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~----~-------- 82 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGV---ENVRFQQGTAESL----P-------- 82 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTC---CSEEEEECBTTBC----C--------
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCC---CCeEEEecccccC----C--------
Confidence 4567999999999999999988763 8999999999999999887 44 4799999996432 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+..||+|+...- ...+ + --..+|+.+++.|+|||.+++-
T Consensus 83 ---------------------~~~~~fD~v~~~~~----l~~~--~----~~~~~l~~~~~~LkpgG~l~~~ 123 (239)
T 1xxl_A 83 ---------------------FPDDSFDIITCRYA----AHHF--S----DVRKAVREVARVLKQDGRFLLV 123 (239)
T ss_dssp ---------------------SCTTCEEEEEEESC----GGGC--S----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------CCCCcEEEEEECCc----hhhc--c----CHHHHHHHHHHHcCCCcEEEEE
Confidence 11367999998421 0011 1 1268999999999999988874
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=4e-07 Score=96.29 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=82.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~--~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..|...+ +..+|++||+++.+++.|++.+... ..++++++++|+.++--...
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-------- 106 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGA-------- 106 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCT--------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccc--------
Confidence 356899999999999999999886 7889999999999999999987321 25789999999865321100
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
......+||+|++.. . -..+--..+|+.+++.|+|||.|++
T Consensus 107 -------------------~~~~~~~fD~V~~~~----~-------l~~~~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 107 -------------------DSVDKQKIDMITAVE----C-------AHWFDFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp -------------------TTTTSSCEEEEEEES----C-------GGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------ccccCCCeeEEeHhh----H-------HHHhCHHHHHHHHHHhcCCCcEEEE
Confidence 000125799999831 1 1112336799999999999999987
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=6.9e-07 Score=98.25 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=83.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC---------------CCCCeEEEEccHHHHHHh
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---------------QDKSLKVHITDGIKFVRE 594 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~---------------~~~rl~v~i~Da~~~l~~ 594 (759)
..+||.+|.|.|+++..+....+..+|++||+|+..++.|++..... .-++++++.+|+.+++..
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 46899999999999999888877778999999999999999876221 112399999999999876
Q ss_pred hcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 595 MKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
.. .+||+|++|.+.. ..+|+..+.+.|+++|++.
T Consensus 128 ~~--------------------------------~~fD~I~lDP~~~--------------~~~~l~~a~~~lk~gG~l~ 161 (378)
T 2dul_A 128 RH--------------------------------RYFHFIDLDPFGS--------------PMEFLDTALRSAKRRGILG 161 (378)
T ss_dssp ST--------------------------------TCEEEEEECCSSC--------------CHHHHHHHHHHEEEEEEEE
T ss_pred cc--------------------------------CCCCEEEeCCCCC--------------HHHHHHHHHHhcCCCCEEE
Confidence 42 4699999975421 1689999999999999988
Q ss_pred EEe
Q 004354 675 VNL 677 (759)
Q Consensus 675 ~N~ 677 (759)
+..
T Consensus 162 vt~ 164 (378)
T 2dul_A 162 VTA 164 (378)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=89.04 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=78.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..|....+ ++++||+++.+++.|++.+ ++++++.+|+.++ .
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~----~----------- 96 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDF----R----------- 96 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTC----C-----------
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHc----c-----------
Confidence 3557999999999999988888764 8999999999999999986 3589999987543 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
. ...||+|++-...- ..+ +..---..+|+.+++.|+|||.|++.....
T Consensus 97 ------------------~-~~~~D~v~~~~~~~---~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 97 ------------------L-GRKFSAVVSMFSSV---GYL---KTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp ------------------C-SSCEEEEEECTTGG---GGC---CSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred ------------------c-CCCCcEEEEcCchH---hhc---CCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 0 25799999511110 000 000012579999999999999999876443
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.7e-06 Score=91.43 Aligned_cols=142 Identities=11% Similarity=0.106 Sum_probs=93.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..+||.||.|.|.++..|... |..+|++||+++.++++|++.. |+ .++++++.+|..+.+.
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l--~~~v~~~~~D~~~~~~------------- 187 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGV--SDRFFVRKGEFLEPFK------------- 187 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTC--TTSEEEEESSTTGGGG-------------
T ss_pred CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECcchhhcc-------------
Confidence 468999999999999999988 8899999999999999999886 44 4579999999876432
Q ss_pred ccccccccCCCCCCCCCCCCCCCce---eEEEEcCCCCCCCCCC-----CcCCCCCC----hHHHHHHHH-HccCcCcEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARV---DILIIDVDSPDSSSGM-----TCPAADFV----EGSFLLTVK-DALSEQGLF 673 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~y---D~Ii~D~~s~d~~~g~-----scPp~~f~----~~~fl~~~~-~~L~~~Gil 673 (759)
.+| |+|+.+.--......+ ..|...+. ..+|++.+. +.|+|||.|
T Consensus 188 ----------------------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l 245 (284)
T 1nv8_A 188 ----------------------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIV 245 (284)
T ss_dssp ----------------------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEE
T ss_pred ----------------------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEE
Confidence 247 9999963110000001 00111010 127999999 999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHhcCceEEEeecCCccEEEEEec
Q 004354 674 IVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLS 716 (759)
Q Consensus 674 v~N~~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~ 716 (759)
++-+.... .+. +.+.|.....++--.+...++++..
T Consensus 246 ~~e~~~~q---~~~----v~~~~~~~~~~~D~~g~~R~~~~~~ 281 (284)
T 1nv8_A 246 LMEIGEDQ---VEE----LKKIVSDTVFLKDSAGKYRFLLLNR 281 (284)
T ss_dssp EEECCTTC---HHH----HTTTSTTCEEEECTTSSEEEEEEEC
T ss_pred EEEECchH---HHH----HHHHHHhCCeecccCCCceEEEEEE
Confidence 98653221 122 3334433222222234566776654
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-06 Score=94.21 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=85.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.+|+|+|.++..+... ..+|++||+++.+++.|++.+....-++++++.+|+.+++.....
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~------------ 275 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK------------ 275 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH------------
T ss_pred CCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHh------------
Confidence 368999999999999988887 459999999999999999997332223399999999999876531
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-----ChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-----~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.+.+||+|++|...-..+ +... .-.+++..+.+.|+|||+|++-..+.
T Consensus 276 -----------------~~~~fD~Ii~dpP~~~~~------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 276 -----------------EGERFDLVVLDPPAFAKG------KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp -----------------TTCCEEEEEECCCCSCCS------TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred -----------------cCCCeeEEEECCCCCCCC------hhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 135799999975321100 1111 12568899999999999998876443
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.7e-07 Score=92.63 Aligned_cols=103 Identities=15% Similarity=0.241 Sum_probs=79.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|+|.++..|.. +..+|++||+++.+++.|++.+ ++++++.+|+.++ .
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~----~----------- 113 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNF----R----------- 113 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTC----C-----------
T ss_pred CCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhC----C-----------
Confidence 3557999999999999988888 6679999999999999999986 4689999987542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
....||+|+..- ....+ + --..+|+.+++.|+|||.|++......
T Consensus 114 -------------------~~~~fD~v~~~~----~l~~~--~----d~~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 114 -------------------VDKPLDAVFSNA----MLHWV--K----EPEAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp -------------------CSSCEEEEEEES----CGGGC--S----CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred -------------------cCCCcCEEEEcc----hhhhC--c----CHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 025799999821 11111 1 125799999999999999998776543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-06 Score=93.83 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=81.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||+|.|.++..+...+ ..+|++||+++.+++.|++.+.- ...++++++.+|..++ .
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---------- 153 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----A---------- 153 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----C----------
T ss_pred CCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC----C----------
Confidence 345799999999999998888775 45999999999999999998721 1246799999996442 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCCh
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 682 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~ 682 (759)
..||+|+..- ....+ |+. --..+|+.+.+.|+|||.+++..+....
T Consensus 154 ----------------------~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 154 ----------------------EPVDRIVSIE----AFEHF--GHE--NYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp ----------------------CCCSEEEEES----CGGGT--CGG--GHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred ----------------------CCcCEEEEeC----hHHhc--CHH--HHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 4699999731 10001 111 1267999999999999999988766543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.38 E-value=3.7e-07 Score=96.00 Aligned_cols=107 Identities=21% Similarity=0.216 Sum_probs=83.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..+.+||.||.|+|.++..+...+|. .+|++||++|.+++.|++.+.-. ..+++++++|+.++ .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~v~~~~~d~~~~----~---------- 85 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-PYDSEFLEGDATEI----E---------- 85 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS-SSEEEEEESCTTTC----C----------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc-CCceEEEEcchhhc----C----------
Confidence 46689999999999999999999884 79999999999999999987432 23899999997653 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
. ..+||+|++...- ..+ + -...+|+.+++.|+|||.|++....
T Consensus 86 -------------------~-~~~fD~v~~~~~l----~~~---~---~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 86 -------------------L-NDKYDIAICHAFL----LHM---T---TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp -------------------C-SSCEEEEEEESCG----GGC---S---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -------------------c-CCCeeEEEECChh----hcC---C---CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 0 2579999984311 111 1 1268999999999999999966533
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-06 Score=92.29 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=79.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..+.+.+|..+++++|+ |.+++.|++++ ++ .+|++++.+|..+ ...
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~---~~p-------- 233 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL--SGRAQVVVGSFFD---PLP-------- 233 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTTS---CCC--------
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc--CcCeEEecCCCCC---CCC--------
Confidence 3457999999999999999999999999999999 99999999987 44 5789999999641 111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..||+|++ ... -..+-+ ..+|+++++.|+|||.|++.-
T Consensus 234 ------------------------~~~D~v~~----~~v-------lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 274 (332)
T 3i53_A 234 ------------------------AGAGGYVL----SAV-------LHDWDDLSAVAILRRCAEAAGSGGVVLVIE 274 (332)
T ss_dssp ------------------------CSCSEEEE----ESC-------GGGSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ------------------------CCCcEEEE----ehh-------hccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 26999998 111 112222 579999999999999888754
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.8e-07 Score=97.98 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=77.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
+.+.||.||.|+|.|++++.+.- ..+|.+||.++ +++.|++.. |+ +++++++.+|..++ .
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~-~~~~a~~~~~~n~~--~~~i~~i~~~~~~~----~--------- 145 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASA-IWQQAREVVRFNGL--EDRVHVLPGPVETV----E--------- 145 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-THHHHHHHHHHTTC--TTTEEEEESCTTTC----C---------
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChH-HHHHHHHHHHHcCC--CceEEEEeeeeeee----c---------
Confidence 34689999999999999998873 34899999997 789998876 55 67899999996553 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
-..+||+|+......- ....-.-.+++....+.|+|||+++
T Consensus 146 ---------------------lpe~~DvivsE~~~~~-------l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 146 ---------------------LPEQVDAIVSEWMGYG-------LLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp ---------------------CSSCEEEEECCCCBTT-------BTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred ---------------------CCccccEEEeeccccc-------ccccchhhhHHHHHHhhCCCCceEC
Confidence 1267999998654321 1222234678888899999999887
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-06 Score=90.86 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=59.9
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCe---EEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccc
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG---ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~---VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~ 127 (759)
+.+...+...+.. .++.+|||||||+|.++..|++.+..+ |+|+|+|+.+++.++++. ..+++++++|+.+
T Consensus 28 ~~i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~~~v~~i~~D~~~ 101 (279)
T 3uzu_A 28 HGVIDAIVAAIRP---ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---GELLELHAGDALT 101 (279)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---GGGEEEEESCGGG
T ss_pred HHHHHHHHHhcCC---CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---CCCcEEEECChhc
Confidence 3455556666654 577899999999999999999885432 999999999999998883 4679999999998
Q ss_pred CC
Q 004354 128 MQ 129 (759)
Q Consensus 128 ~~ 129 (759)
++
T Consensus 102 ~~ 103 (279)
T 3uzu_A 102 FD 103 (279)
T ss_dssp CC
T ss_pred CC
Confidence 87
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.37 E-value=8.8e-07 Score=91.07 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=78.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|+|.++..|... ..++++||+++.+++.|++.+ -...++++++.+|+.++ .
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~----~----------- 99 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAI----P----------- 99 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSC----C-----------
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccC----C-----------
Confidence 45579999999999998888876 469999999999999999998 22357899999997532 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+..||+|+... ....+ + --..+|+.+++.|+|||.+++..
T Consensus 100 ------------------~~~~~fD~v~~~~----~l~~~---~---~~~~~l~~~~~~L~pgG~l~~~~ 141 (263)
T 2yqz_A 100 ------------------LPDESVHGVIVVH----LWHLV---P---DWPKVLAEAIRVLKPGGALLEGW 141 (263)
T ss_dssp ------------------SCTTCEEEEEEES----CGGGC---T---THHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCCeeEEEECC----chhhc---C---CHHHHHHHHHHHCCCCcEEEEEe
Confidence 1136799999821 11111 1 13679999999999999988873
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-06 Score=89.37 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=77.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
+...+||.||+|.|.++..|.... .++++||+++.+++.|++.+. +++++.+|+.++ .
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~----~----------- 106 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDF----S----------- 106 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTC----C-----------
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHC----C-----------
Confidence 345799999999999999888874 489999999999999999864 689999997653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC----ChHHHHHHHHHccCcCcEEEEEe
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f----~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
....||+|++..+. -..+ --..+|+.+++.|+|||.|++..
T Consensus 107 -------------------~~~~fD~v~~~~~~----------l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 107 -------------------LGRRFSAVTCMFSS----------IGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp -------------------CSCCEEEEEECTTG----------GGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred -------------------ccCCcCEEEEcCch----------hhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 03679999983110 1112 12468999999999999999863
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-06 Score=87.69 Aligned_cols=141 Identities=16% Similarity=0.215 Sum_probs=91.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHH----HHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTML----NLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATD 602 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~----~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~ 602 (759)
....+||.||.|+|.++..+.... |..+|.+||++|.++ +.|++. .++.++++|+...- ...
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r------~nv~~i~~Da~~~~-~~~------ 141 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR------PNIFPLLADARFPQ-SYK------ 141 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC------TTEEEEECCTTCGG-GTT------
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------CCeEEEEcccccch-hhh------
Confidence 345799999999999999998875 567999999999774 455543 46999999976421 100
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC-
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS- 681 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~- 681 (759)
.....||+|++|+-..+ ...-++..+++.|+|||.|++-+-.++
T Consensus 142 -----------------------~~~~~~D~I~~d~a~~~------------~~~il~~~~~~~LkpGG~lvisik~~~~ 186 (232)
T 3id6_C 142 -----------------------SVVENVDVLYVDIAQPD------------QTDIAIYNAKFFLKVNGDMLLVIKARSI 186 (232)
T ss_dssp -----------------------TTCCCEEEEEECCCCTT------------HHHHHHHHHHHHEEEEEEEEEEEC----
T ss_pred -----------------------ccccceEEEEecCCChh------------HHHHHHHHHHHhCCCCeEEEEEEccCCc
Confidence 01257999999863211 112345566779999999998763332
Q ss_pred ------hhHHHHHHHHHHHh-cCceEEEeec--CCccEEEEEec
Q 004354 682 ------QATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGLS 716 (759)
Q Consensus 682 ------~~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~Vl~a~~ 716 (759)
.+..+.++..|++. |.-+-.+..+ +....+++|.+
T Consensus 187 d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~ 230 (232)
T 3id6_C 187 DVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKY 230 (232)
T ss_dssp ---CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEEe
Confidence 22234566777654 6555444443 33556666653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-06 Score=88.25 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=79.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..+... +..++++||+++.+++.|++.+.- .+++++.+|+.+.. .
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~--~------------ 103 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLH--L------------ 103 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCC--C------------
T ss_pred cCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhcc--C------------
Confidence 34579999999999999888887 333999999999999999998753 47999999976531 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
....||+|+... ....+ + --..+|+.+++.|+|||.|++...
T Consensus 104 -------------------~~~~fD~v~~~~----~l~~~---~---~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 104 -------------------PQDSFDLAYSSL----ALHYV---E---DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp -------------------CTTCEEEEEEES----CGGGC---S---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------------------CCCCceEEEEec----ccccc---c---hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 136799999832 11111 1 136899999999999999998763
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.8e-06 Score=90.34 Aligned_cols=108 Identities=14% Similarity=0.155 Sum_probs=80.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||+|.|.++..+....+. ++++||+++.+++.|++.+.- ...++++++.+|..++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--------------- 126 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--------------- 126 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---------------
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC---------------
Confidence 44569999999999999888866554 999999999999999998621 1246899999997432
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
...||+|+..- ....+ ++. --..+|+.+++.|+|||.+++.....
T Consensus 127 ---------------------~~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 127 ---------------------DEPVDRIVSIG----AFEHF--GHE--RYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp ---------------------CCCCSEEEEES----CGGGT--CTT--THHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred ---------------------CCCeeEEEEeC----chhhc--ChH--HHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 14699999721 10001 111 12689999999999999999876554
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.1e-06 Score=85.54 Aligned_cols=121 Identities=15% Similarity=0.114 Sum_probs=87.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|.|.++..|... ..++++||+++.+++.|++.++ ++++.+|..+.-
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~------~~~~~~d~~~~~---------------- 98 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLG------RPVRTMLFHQLD---------------- 98 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHT------SCCEECCGGGCC----------------
T ss_pred CCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcC------CceEEeeeccCC----------------
Confidence 4579999999999999988877 4599999999999999999883 567778765431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC---hHHHHHHHHHccCcCcEEEEEecCCChh--
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQGLFIVNLVSRSQA-- 683 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~---~~~fl~~~~~~L~~~Gilv~N~~~~~~~-- 683 (759)
....||+|+.. .. -.++- -..+|+.+++.|+|||.|++.+......
T Consensus 99 ------------------~~~~fD~v~~~----~~-------l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 149 (211)
T 3e23_A 99 ------------------AIDAYDAVWAH----AC-------LLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGR 149 (211)
T ss_dssp ------------------CCSCEEEEEEC----SC-------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE
T ss_pred ------------------CCCcEEEEEec----Cc-------hhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc
Confidence 13689999982 11 11111 2479999999999999999887554321
Q ss_pred ----------HHHHHHHHHHHh--cCceEEE
Q 004354 684 ----------TKDMVISRMKMV--FNHLFCL 702 (759)
Q Consensus 684 ----------~~~~v~~~l~~v--F~~v~~~ 702 (759)
..+.+.+.+++. |..+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 150 DKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp CTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred cccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 235566666665 7755443
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-06 Score=98.35 Aligned_cols=134 Identities=17% Similarity=0.190 Sum_probs=95.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+|.|.|..+..|...+++ .+|+++|+++..++.+++.+ |+ ++++++.+|+.++....
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~~--------- 326 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI---KIVKPLVKDARKAPEII--------- 326 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCTTCCSSSS---------
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEEEcChhhcchhh---------
Confidence 4468999999999999999998876 79999999999999999886 55 46999999976541111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--------------ChHHHHHHHHHccCcC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--------------~~~~fl~~~~~~L~~~ 670 (759)
.+..||+|++|+-.+. .|+....+.. +...+|+.+.+.|+||
T Consensus 327 ----------------------~~~~fD~Vl~D~Pcsg--~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 382 (450)
T 2yxl_A 327 ----------------------GEEVADKVLLDAPCTS--SGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPG 382 (450)
T ss_dssp ----------------------CSSCEEEEEEECCCCC--GGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEE
T ss_pred ----------------------ccCCCCEEEEcCCCCC--CeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1257999999985432 1221111111 1267899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhcCc
Q 004354 671 GLFIVNLVSRSQATKDMVISRMKMVFNH 698 (759)
Q Consensus 671 Gilv~N~~~~~~~~~~~v~~~l~~vF~~ 698 (759)
|.|++-..+......+.++..+.+-++.
T Consensus 383 G~lvy~tcs~~~~ene~~v~~~l~~~~~ 410 (450)
T 2yxl_A 383 GRLLYTTCSIFKEENEKNIRWFLNVHPE 410 (450)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHHHCSS
T ss_pred cEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 9999877666555445566665554443
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=95.42 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=78.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||.|.|.++.++... +..+|++||+++ +++.|++.. |+ .++++++.+|..++ ..
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~--~~~v~~~~~d~~~~--~~---------- 129 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKL--DHVVTIIKGKVEEV--EL---------- 129 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTC--TTTEEEEESCTTTC--CC----------
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCC--CCcEEEEECcHHHc--cC----------
Confidence 4579999999999999999988 666999999995 999999886 44 56799999997654 11
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
...+||+|+.+.-... + ...-.-..++..+.+.|+|||+++.+
T Consensus 130 ---------------------~~~~fD~Iis~~~~~~----l---~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 130 ---------------------PVEKVDIIISEWMGYC----L---FYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp ---------------------SSSCEEEEEECCCBBT----B---TBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ---------------------CCCceEEEEEcccccc----c---cCchhHHHHHHHHHHhCCCCCEEccc
Confidence 1368999999541110 0 11112367899999999999998743
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.34 E-value=7e-07 Score=90.72 Aligned_cols=106 Identities=14% Similarity=0.185 Sum_probs=79.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
+.+||.||+|.|.++..|.. +..+|++||+++.+++.|++.+.- ....+++++.+|+.++.
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------------- 128 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR---------------- 128 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC----------------
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC----------------
Confidence 35999999999999988865 456999999999999999999853 12467999999976531
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
....||+|+.-. ....+ |+. .-..+++.+++.|+|||.|++....
T Consensus 129 ------------------~~~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 173 (235)
T 3lcc_A 129 ------------------PTELFDLIFDYV----FFCAI--EPE--MRPAWAKSMYELLKPDGELITLMYP 173 (235)
T ss_dssp ------------------CSSCEEEEEEES----STTTS--CGG--GHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ------------------CCCCeeEEEECh----hhhcC--CHH--HHHHHHHHHHHHCCCCcEEEEEEec
Confidence 125799999721 11111 111 2367999999999999999876554
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.3e-06 Score=87.34 Aligned_cols=112 Identities=13% Similarity=0.205 Sum_probs=81.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..|....+ +|++||+++.+++.|++.+. ..+++++.+|+.+.-.....
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~---------- 119 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQI---------- 119 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHHH----------
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc---ccCceEEECccccccccccc----------
Confidence 3457899999999999999998875 89999999999999999984 35899999998775332110
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
. ....||+|+...--.. + ++. --..+|+.+++.|+|||.|++--+..
T Consensus 120 ~------------------~~~~~d~v~~~~~~~~----~--~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 120 H------------------SEIGDANIYMRTGFHH----I--PVE--KRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp H------------------HHHCSCEEEEESSSTT----S--CGG--GHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred c------------------cccCccEEEEcchhhc----C--CHH--HHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 0 0134899998431110 1 111 12689999999999999766554443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=88.05 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=77.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.||.|.|.++..+.... |..++++||+++.+++.|++.+ |+ ++++++.+|+.+.+..
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~--------- 143 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY---DNVIVIVGDGTLGYEP--------- 143 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC---TTEEEEESCGGGCCGG---------
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCeEEEECCcccCCCC---------
Confidence 345699999999999988888876 5579999999999999999986 44 4599999997432111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
...||+|+++..-. ++. +.+.+.|+|||.+++.+...
T Consensus 144 ------------------------~~~fD~v~~~~~~~-----------~~~-----~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 144 ------------------------LAPYDRIYTTAAGP-----------KIP-----EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp ------------------------GCCEEEEEESSBBS-----------SCC-----HHHHHTEEEEEEEEEEESSS
T ss_pred ------------------------CCCeeEEEECCchH-----------HHH-----HHHHHHcCCCcEEEEEECCC
Confidence 25699999843111 111 48899999999999988654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=9.8e-07 Score=89.08 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=78.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcC---C--CCCCCeEEEEccHHHHHHhhcccCcc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFG---F--TQDKSLKVHITDGIKFVREMKSSSAT 601 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg---l--~~~~rl~v~i~Da~~~l~~~~~~~~~ 601 (759)
....+||.||.|.|.++..|...+ +..+|++||+++.+++.|++.+. + ...++++++.+|+.....
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------- 147 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-------- 147 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG--------
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc--------
Confidence 345799999999999998888775 55699999999999999998762 1 013579999999763211
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 602 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
....||+|+++... .+ +++.+.+.|+|||.|++.+.+.
T Consensus 148 -------------------------~~~~fD~i~~~~~~-----------~~-----~~~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 148 -------------------------EEAPYDAIHVGAAA-----------PV-----VPQALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp -------------------------GGCCEEEEEECSBB-----------SS-----CCHHHHHTEEEEEEEEEEESCT
T ss_pred -------------------------cCCCcCEEEECCch-----------HH-----HHHHHHHhcCCCcEEEEEEecC
Confidence 02569999985422 12 3468889999999999988554
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=96.63 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=83.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCC-CCC-eEEEEccHHHHHH-hhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQ-DKS-LKVHITDGIKFVR-EMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fgl~~-~~r-l~v~i~Da~~~l~-~~~~~~~~~~~ 604 (759)
...+||.++.|.|.++..+....++ .+|++||+||..++.|++...+.. +++ ++++.+|+.++++ ...
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~-------- 123 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWG-------- 123 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCS--------
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhC--------
Confidence 3468999999999999888877654 589999999999999999873321 345 9999999999987 542
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
.+||+|++|.+.. + .+|+..+.+.|++||+|++-.
T Consensus 124 ------------------------~~fD~V~lDP~g~--------~------~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 124 ------------------------FGFDYVDLDPFGT--------P------VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ------------------------SCEEEEEECCSSC--------C------HHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------------CCCcEEEECCCcC--------H------HHHHHHHHHHhCCCCEEEEEe
Confidence 5699999987321 1 569999999999999988754
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.2e-06 Score=92.28 Aligned_cols=102 Identities=20% Similarity=0.289 Sum_probs=76.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||.|+|.+++++.+. +..+|++||+++ +++.|++.+ |+ .++++++.+|+.++ .
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~--~~~i~~~~~d~~~~----~--------- 100 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNGF--SDKITLLRGKLEDV----H--------- 100 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTTC--TTTEEEEESCTTTS----C---------
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHH-HHHHHHHHHHHcCC--CCCEEEEECchhhc----c---------
Confidence 4579999999999999999887 556999999995 899999886 44 56899999997653 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
....+||+|+.+.... .+ ...-.-..++..+++.|+|||+++
T Consensus 101 --------------------~~~~~~D~Ivs~~~~~----~l---~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 101 --------------------LPFPKVDIIISEWMGY----FL---LYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp --------------------CSSSCEEEEEECCCBT----TB---STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCCcccEEEEeCchh----hc---ccHHHHHHHHHHHHhhcCCCeEEE
Confidence 0125799999863211 00 111122578999999999999997
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=82.24 Aligned_cols=85 Identities=13% Similarity=0.181 Sum_probs=65.2
Q ss_pred CCCeEEEECCCcc-hhHHHHHH-hCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----CcccEEEeCCCC
Q 004354 68 PPPQILVPGCGNS-RLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----GGLDALMEPELG 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G-~ls~~L~~-~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----gtfD~Ii~~~~~ 141 (759)
++.+|||||||+| +.+..|++ .|+. |+++|+++.+++ +++.|+++.. ..||+|++....
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~g~~-V~atDInp~Av~--------------~v~dDiF~P~~~~Y~~~DLIYsirPP 99 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHSKVD-LVLTDIKPSHGG--------------IVRDDITSPRMEIYRGAALIYSIRPP 99 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHSCCE-EEEECSSCSSTT--------------EECCCSSSCCHHHHTTEEEEEEESCC
T ss_pred CCCcEEEEccCCChHHHHHHHHhCCCe-EEEEECCccccc--------------eEEccCCCCcccccCCcCEEEEcCCC
Confidence 4579999999999 69999997 7885 999999996654 8899998866 589999887655
Q ss_pred hhHHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 142 HKLGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 142 ~~~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
.+....+++-..++ |.-+++..++.+
T Consensus 100 ~El~~~i~~lA~~v---~adliI~pL~~E 125 (153)
T 2k4m_A 100 AEIHSSLMRVADAV---GARLIIKPLTGE 125 (153)
T ss_dssp TTTHHHHHHHHHHH---TCEEEEECBTTB
T ss_pred HHHHHHHHHHHHHc---CCCEEEEcCCCC
Confidence 54444444443333 677888887654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.7e-07 Score=96.55 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=81.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC---CCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ---DKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~---~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
.+.+||.||+|.|.++..|... ..+|++||+++.+++.|++.+.-.. ..+++++.+|+.++ .
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~----~--------- 146 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF----A--------- 146 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC----C---------
T ss_pred CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC----C---------
Confidence 3459999999999998888877 4689999999999999999874311 16899999997653 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh----HHHHHHHHHccCcCcEEEEEecCCC
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~----~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
....||+|++... ..++++ ..+|+.+++.|+|||.|++.+....
T Consensus 147 ---------------------~~~~fD~v~~~~~-----------~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 147 ---------------------LDKRFGTVVISSG-----------SINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp ---------------------CSCCEEEEEECHH-----------HHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred ---------------------cCCCcCEEEECCc-----------ccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 0367999986211 111222 6899999999999999999987654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.5e-07 Score=91.10 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=76.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.||+|+|.++..|...+ |..+|++||++|.+++.+.+.... .++++++.+|+.+... ..
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~--~~~v~~~~~d~~~~~~-~~----------- 142 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--RTNIIPVIEDARHPHK-YR----------- 142 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--CTTEEEECSCTTCGGG-GG-----------
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc--cCCeEEEEcccCChhh-hc-----------
Confidence 45699999999999999998886 567999999998765544433321 1579999999876321 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
.....||+|++|+...+ ....++..+.+.|+|||.+++-+..
T Consensus 143 ------------------~~~~~~D~V~~~~~~~~------------~~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 143 ------------------MLIAMVDVIFADVAQPD------------QTRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp ------------------GGCCCEEEEEECCCCTT------------HHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ------------------ccCCcEEEEEEcCCCcc------------HHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 01257999999653111 1245688899999999999986543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.9e-06 Score=93.38 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=77.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||.|+|.++.++.+. +..+|++||+++ +++.|++.+ |+ .++++++.+|+.++ ..
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~--~~~i~~~~~d~~~~--~~--------- 127 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKL--EDTITLIKGKIEEV--HL--------- 127 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTC--TTTEEEEESCTTTS--CC---------
T ss_pred cCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCC--CCcEEEEEeeHHHh--cC---------
Confidence 45679999999999999999887 456999999997 899999886 44 46899999997654 11
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
...+||+|+.+.-.- .+ ...-.-..+|..+++.|+|||.++
T Consensus 128 ----------------------~~~~~D~Ivs~~~~~----~l---~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 128 ----------------------PVEKVDVIISEWMGY----FL---LFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp ----------------------SCSCEEEEEECCCBT----TB---TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred ----------------------CCCcEEEEEEcCchh----hc---cCHHHHHHHHHHHHhhcCCCcEEE
Confidence 136799999853110 00 011112568999999999999988
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.32 E-value=3.5e-06 Score=90.13 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=82.0
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC---
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--- 129 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--- 129 (759)
++..++.. .++.+|||+|||+|..+.+++.. +-..|+++|+++.+++.+++++...+ .+++++++|+.++.
T Consensus 93 l~~~~l~~---~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~ 169 (309)
T 2b9e_A 93 LPAMLLDP---PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD 169 (309)
T ss_dssp HHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC
T ss_pred HHHHHhCC---CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc
Confidence 34445543 57889999999999999999875 33469999999999999998876544 57999999998764
Q ss_pred ---CcccEEEeCCC----C---h-----h--------------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 ---GGLDALMEPEL----G---H-----K--------------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 ---gtfD~Ii~~~~----~---~-----~--------------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+.||.|+++.. . . + ...+++..+.++|+ ||+++..|.+
T Consensus 170 ~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 170 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred cccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 47999997420 0 0 0 02356777878886 9999988765
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.32 E-value=8.9e-07 Score=97.44 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=83.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc--------CCCCCCCeEEEEccHHHHHHhhccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF--------GFTQDKSLKVHITDGIKFVREMKSS 598 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F--------gl~~~~rl~v~i~Da~~~l~~~~~~ 598 (759)
....+||.||.|+|.++..|...+ |..+|++||+++.+++.|++.+ |....++++++.+|+.+......
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~-- 159 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP-- 159 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS--
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc--
Confidence 356799999999999998888876 6789999999999999999986 41234689999999765421100
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 599 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
....+..||+|+...-- ..+ +. -..+|+.+++.|+|||.|++..
T Consensus 160 -------------------------~~~~~~~fD~V~~~~~l----~~~---~d---~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 160 -------------------------EGVPDSSVDIVISNCVC----NLS---TN---KLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp -------------------------CCCCTTCEEEEEEESCG----GGC---SC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------------CCCCCCCEEEEEEccch----hcC---CC---HHHHHHHHHHHcCCCCEEEEEE
Confidence 00124689999984211 111 11 2689999999999999998864
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-06 Score=86.44 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=76.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.||.|.|.++..+... ..++++||+++.+++.|++.+.-...++++++.+|..++ .
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~------------ 93 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNL----T------------ 93 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGC----C------------
T ss_pred CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhC----C------------
Confidence 4569999999999999988887 459999999999999999986221124699999997653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
. ...||+|+... ....+ ++. .-..+++.+++.|+|||.+++-
T Consensus 94 -----------------~-~~~~D~v~~~~----~l~~~--~~~--~~~~~l~~~~~~L~~gG~l~~~ 135 (199)
T 2xvm_A 94 -----------------F-DRQYDFILSTV----VLMFL--EAK--TIPGLIANMQRCTKPGGYNLIV 135 (199)
T ss_dssp -----------------C-CCCEEEEEEES----CGGGS--CGG--GHHHHHHHHHHTEEEEEEEEEE
T ss_pred -----------------C-CCCceEEEEcc----hhhhC--CHH--HHHHHHHHHHHhcCCCeEEEEE
Confidence 1 26799999732 10001 111 1267999999999999987653
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.31 E-value=9.7e-07 Score=87.95 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=77.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||.|.|.++..+ +..++++||+++.+++.|++.+ ++++++.+|+.+. .
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~----~------------ 90 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEAL----P------------ 90 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSC----C------------
T ss_pred CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccC----C------------
Confidence 5579999999999988777 2238999999999999999987 4688888886442 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
..+.+||+|++.- ....+. --..+|+.+++.|+|||.+++....+...
T Consensus 91 -----------------~~~~~fD~v~~~~----~l~~~~------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 138 (211)
T 2gs9_A 91 -----------------FPGESFDVVLLFT----TLEFVE------DVERVLLEARRVLRPGGALVVGVLEALSP 138 (211)
T ss_dssp -----------------SCSSCEEEEEEES----CTTTCS------CHHHHHHHHHHHEEEEEEEEEEEECTTSH
T ss_pred -----------------CCCCcEEEEEEcC----hhhhcC------CHHHHHHHHHHHcCCCCEEEEEecCCcCc
Confidence 1136799999831 111111 13689999999999999999988766543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-07 Score=91.95 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=77.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC------CCcEEEEEcCHHHHHHHHhhcCCCC-----CCCeEEEEccHHHHHHhhcc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP------FVGIEAVELDLTMLNLAEDYFGFTQ-----DKSLKVHITDGIKFVREMKS 597 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p------~~~i~~VEiDp~v~~vA~~~Fgl~~-----~~rl~v~i~Da~~~l~~~~~ 597 (759)
...+||.||.|.|.++..|....+ ..+|++||+++.+++.|++.+.-.. .++++++.+|+.+.+..
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 160 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP--- 160 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG---
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc---
Confidence 346999999999999988887654 2599999999999999998863111 25799999998752111
Q ss_pred cCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 598 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
...||+|+++.... . +++.+.+.|+|||.+++.+
T Consensus 161 ------------------------------~~~fD~I~~~~~~~-----------~-----~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 161 ------------------------------NAPYNAIHVGAAAP-----------D-----TPTELINQLASGGRLIVPV 194 (227)
T ss_dssp ------------------------------GCSEEEEEECSCBS-----------S-----CCHHHHHTEEEEEEEEEEE
T ss_pred ------------------------------CCCccEEEECCchH-----------H-----HHHHHHHHhcCCCEEEEEE
Confidence 25799999854221 1 2378899999999999998
Q ss_pred cC
Q 004354 678 VS 679 (759)
Q Consensus 678 ~~ 679 (759)
..
T Consensus 195 ~~ 196 (227)
T 1r18_A 195 GP 196 (227)
T ss_dssp SC
T ss_pred ec
Confidence 65
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.3e-06 Score=93.23 Aligned_cols=106 Identities=12% Similarity=0.141 Sum_probs=78.9
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..+||.+|+|+|..+..+... ...|++||+++.+++.|++.+ |+. .+++.+|+.+++....
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~----~~~~~~D~~~~l~~~~---------- 278 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLR----VDIRHGEALPTLRGLE---------- 278 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC----CEEEESCHHHHHHTCC----------
T ss_pred CCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCC----CcEEEccHHHHHHHhc----------
Confidence 579999999999999988876 345999999999999999987 542 2577999999987643
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-----ChHHHHHHHHHccCcCcEEEEEecC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-----~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
+. ||+|++|...-.. ..... .-.+++..+.+.|+|||+|++-..+
T Consensus 279 ---------------------~~-fD~Ii~dpP~f~~------~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 279 ---------------------GP-FHHVLLDPPTLVK------RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp ---------------------CC-EEEEEECCCCCCS------SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ---------------------CC-CCEEEECCCcCCC------CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 24 9999997422100 01111 1247889999999999999854433
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-06 Score=92.43 Aligned_cols=105 Identities=16% Similarity=0.251 Sum_probs=80.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..|...++ .++++||+++.+++.|++.+ |+ .++++++.+|+.+. .
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~----~-------- 145 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAGL--ADNITVKYGSFLEI----P-------- 145 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHTC--TTTEEEEECCTTSC----S--------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEEcCcccC----C--------
Confidence 4557999999999999988888753 59999999999999999886 54 46899999996542 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
..+..||+|+.- .....+ |. -..+|+.+++.|+|||.|++...
T Consensus 146 ---------------------~~~~~fD~v~~~----~~l~~~--~~----~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 146 ---------------------CEDNSYDFIWSQ----DAFLHS--PD----KLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp ---------------------SCTTCEEEEEEE----SCGGGC--SC----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------------------CCCCCEeEEEec----chhhhc--CC----HHHHHHHHHHHcCCCeEEEEEEe
Confidence 113679999972 111111 11 37899999999999999887654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.3e-06 Score=94.49 Aligned_cols=116 Identities=8% Similarity=0.111 Sum_probs=85.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~-~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.+|+|+|.++..+... +..+|++||+++.+++.|++.+.... +++++++.+|+.+++.....
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~---------- 285 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK---------- 285 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH----------
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHh----------
Confidence 4579999999999999988876 44599999999999999999883321 23899999999999876431
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-----ChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-----~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.+.+||+|++|...... ..... .-.+++..+.+.|+|||+|++-..+.
T Consensus 286 -------------------~~~~fD~Vi~dpP~~~~------~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 286 -------------------KGEKFDIVVLDPPAFVQ------HEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp -------------------TTCCEEEEEECCCCSCS------SGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred -------------------hCCCCCEEEECCCCCCC------CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 13579999997422100 01111 13568899999999999888765443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.31 E-value=4e-06 Score=83.11 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=89.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH-----HHhhcccCcccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF-----VREMKSSSATDE 603 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~-----l~~~~~~~~~~~ 603 (759)
...+||.||.|.|.++.++.+. ..+|++||++|.. ..++++++.+|..+. +.+...
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~------ 85 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALR------ 85 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHH------
T ss_pred CCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhh------
Confidence 4579999999999999999887 5699999999851 235799999997542 111100
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCC---CChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD---FVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~---f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
+....+||+|+.|.... ..|....... -+-...++.+.+.|+|||.|++-+...
T Consensus 86 ---------------------~~~~~~~D~Vlsd~~~~--~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~ 142 (191)
T 3dou_A 86 ---------------------EEGIEKVDDVVSDAMAK--VSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG 142 (191)
T ss_dssp ---------------------HHTCSSEEEEEECCCCC--CCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ---------------------cccCCcceEEecCCCcC--CCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence 00013799999986321 1111000000 012467888899999999999988754
Q ss_pred ChhHHHHHHHHHHHhcCceEEEee
Q 004354 681 SQATKDMVISRMKMVFNHLFCLQL 704 (759)
Q Consensus 681 ~~~~~~~v~~~l~~vF~~v~~~~~ 704 (759)
.. ...++..++..|..|...+.
T Consensus 143 ~~--~~~~~~~l~~~F~~v~~~kP 164 (191)
T 3dou_A 143 DM--TNDFIAIWRKNFSSYKISKP 164 (191)
T ss_dssp TH--HHHHHHHHGGGEEEEEEECC
T ss_pred CC--HHHHHHHHHHhcCEEEEECC
Confidence 43 34678889999999888764
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.6e-06 Score=92.99 Aligned_cols=119 Identities=13% Similarity=0.088 Sum_probs=86.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC--CCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ--DKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~--~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+||.+|+|+|.++..+.... ..+|++||+++..++.|++.+.... +++++++.+|+.+++.....
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~---------- 289 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---------- 289 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH----------
T ss_pred CCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh----------
Confidence 4699999999999998888763 4599999999999999999884321 22799999999999876431
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCC-CCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS-SGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~-~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.+.+||+|++|.-....+ ..+ ....-.-.+++..+.+.|+|||++++-..+.
T Consensus 290 -------------------~~~~fD~Ii~dpP~~~~~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 290 -------------------RGEKFDVIVMDPPKFVENKSQL--MGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp -------------------TTCCEEEEEECCSSTTTCSSSS--SCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred -------------------cCCCCCEEEECCCCCCCChhHH--HHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 125799999986321100 000 0000112578999999999999998866443
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.2e-06 Score=87.69 Aligned_cols=106 Identities=16% Similarity=0.127 Sum_probs=78.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..|.... ..++++||+++.+++.|++.+.- .++++++.+|..++ .
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~----~----------- 153 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG--MPVGKFILASMETA----T----------- 153 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT--SSEEEEEESCGGGC----C-----------
T ss_pred cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhcc--CCceEEEEccHHHC----C-----------
Confidence 456799999999999998887765 45799999999999999999853 26799999997553 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
.....||+|++-- ....+ |+. --..+|+.+++.|+|||.|++-.
T Consensus 154 ------------------~~~~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 154 ------------------LPPNTYDLIVIQW----TAIYL--TDA--DFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp ------------------CCSSCEEEEEEES----CGGGS--CHH--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCCeEEEEEcc----hhhhC--CHH--HHHHHHHHHHHhcCCCeEEEEEe
Confidence 1135799999721 10000 000 12679999999999999888754
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=6.4e-07 Score=98.76 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=78.1
Q ss_pred CCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCC-C--cEEEEeecccC-----CCcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-D--MRWRVMDMTSM-----QGGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~-~--i~f~~~D~~~~-----~gtfD~Ii~ 137 (759)
++.+|||++||+|.++..++.. |...|+++|+++.+++.+++++...+- + ++++++|+.+. .+.||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4679999999999999999885 556799999999999999998865542 3 89999998543 257999999
Q ss_pred CCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 138 PELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 138 ~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+... ....++..+.+.|++||.+++..
T Consensus 132 DP~g--~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DPFG--TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CCSS--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCc--CHHHHHHHHHHHhCCCCEEEEEe
Confidence 8721 23568899999999999666554
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-06 Score=95.01 Aligned_cols=104 Identities=21% Similarity=0.161 Sum_probs=76.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||.|.|.++.++.+. +..+|++||+++ +++.|++.+ |+ .++++++.+|..++ .
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l--~~~v~~~~~d~~~~----~-------- 112 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNL--TDRIVVIPGKVEEV----S-------- 112 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTC--TTTEEEEESCTTTC----C--------
T ss_pred CCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCC--CCcEEEEEcchhhC----C--------
Confidence 34579999999999999999886 556999999997 789998876 44 46899999996553 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
...+||+|+...... .+ .... -.+++..+++.|+|||+++++.
T Consensus 113 ----------------------~~~~~D~Ivs~~~~~----~~--~~~~--~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 113 ----------------------LPEQVDIIISEPMGY----ML--FNER--MLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp ----------------------CSSCEEEEEECCCBT----TB--TTTS--HHHHHHHGGGGEEEEEEEESCE
T ss_pred ----------------------CCCceeEEEEeCchh----cC--ChHH--HHHHHHHHHhhcCCCeEEEEec
Confidence 025799999842110 00 0111 2467788899999999998553
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=90.41 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=98.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||.|.|.++..|....|..+|++||+||..++.|++.. |+ .++++++.+|+.+.+..
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl--~~~I~v~~gD~l~~~~~----------- 87 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL--TEQIDVRKGNGLAVIEK----------- 87 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCG-----------
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEEecchhhccCc-----------
Confidence 346899999999999999999887779999999999999999986 65 56899999998876422
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHH
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 685 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~ 685 (759)
+.+||+|++ .|| -. -+-.++|....+.|+++|.||+.-....
T Consensus 88 ----------------------~~~~D~Ivi--------agm---Gg-~lI~~IL~~~~~~L~~~~~lIlq~~~~~---- 129 (244)
T 3gnl_A 88 ----------------------KDAIDTIVI--------AGM---GG-TLIRTILEEGAAKLAGVTKLILQPNIAA---- 129 (244)
T ss_dssp ----------------------GGCCCEEEE--------EEE---CH-HHHHHHHHHTGGGGTTCCEEEEEESSCH----
T ss_pred ----------------------cccccEEEE--------eCC---ch-HHHHHHHHHHHHHhCCCCEEEEEcCCCh----
Confidence 135999987 122 11 1236789999999999999998864322
Q ss_pred HHHHHHHHHh-cCceEEEeecC--CccEEEEEecCC
Q 004354 686 DMVISRMKMV-FNHLFCLQLEE--DVNLVLFGLSSE 718 (759)
Q Consensus 686 ~~v~~~l~~v-F~~v~~~~~~~--~~N~Vl~a~~~~ 718 (759)
..+...|.+. |.-+-..-+.+ -.=+|+.+.+..
T Consensus 130 ~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~~~~~ 165 (244)
T 3gnl_A 130 WQLREWSEQNNWLITSEAILREDNKVYEIMVLAPSE 165 (244)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEETTEEEEEEEEEECS
T ss_pred HHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeCC
Confidence 2344555544 54322222222 234566666553
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-06 Score=91.09 Aligned_cols=115 Identities=13% Similarity=0.141 Sum_probs=81.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CC-CCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GF-TQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.||+|.|.++..|... ..+|++||+++.+++.|++.. +. ....++.++.+|+.+.-....
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------- 126 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP------- 126 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-------
T ss_pred cCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccc-------
Confidence 34579999999999999988887 349999999999999998764 11 122578899999887643321
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCC---CCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA---DFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~---~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
...+||+|++-- ....-+ +.. .=.-..+|+.+.+.|+|||+|++....
T Consensus 127 -----------------------~~~~fD~V~~~g---~~l~~~--~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 127 -----------------------AGDGFDAVICLG---NSFAHL--PDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp -----------------------CTTCEEEEEECT---TCGGGS--CCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred -----------------------cCCCeEEEEEcC---hHHhhc--CccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 136799999820 110001 110 001367999999999999999988743
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-06 Score=92.24 Aligned_cols=105 Identities=13% Similarity=0.101 Sum_probs=81.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..|...+ ..+|++||+++.+++.|++.+ |+ .++++++.+|+.+. .
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~----~-------- 180 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRI--DDHVRSRVCNMLDT----P-------- 180 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSC----C--------
T ss_pred CCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCceEEEECChhcC----C--------
Confidence 456799999999999999888875 469999999999999999986 44 46899999997542 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
..+..||+|+.- +. +. .+--..+|+.+.+.|+|||.|++-...
T Consensus 181 ---------------------~~~~~fD~V~~~----~~---l~----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 223 (312)
T 3vc1_A 181 ---------------------FDKGAVTASWNN----ES---TM----YVDLHDLFSEHSRFLKVGGRYVTITGC 223 (312)
T ss_dssp ---------------------CCTTCEEEEEEE----SC---GG----GSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ---------------------CCCCCEeEEEEC----Cc---hh----hCCHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 113689999972 11 10 111588999999999999988876543
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-06 Score=92.89 Aligned_cols=86 Identities=12% Similarity=0.088 Sum_probs=68.6
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~ 129 (759)
+.+...+..++.. .++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.+++++...+.+++++++|+.+++
T Consensus 12 pvLl~e~l~~L~~---~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~ 88 (301)
T 1m6y_A 12 PVMVREVIEFLKP---EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD 88 (301)
T ss_dssp CTTHHHHHHHHCC---CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 3455556666654 577899999999999999999873 346999999999999999987654468999999998764
Q ss_pred --------CcccEEEeCC
Q 004354 130 --------GGLDALMEPE 139 (759)
Q Consensus 130 --------gtfD~Ii~~~ 139 (759)
+.||.|+++.
T Consensus 89 ~~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 89 FLLKTLGIEKVDGILMDL 106 (301)
T ss_dssp HHHHHTTCSCEEEEEEEC
T ss_pred HHHHhcCCCCCCEEEEcC
Confidence 3688888753
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.1e-06 Score=86.39 Aligned_cols=111 Identities=10% Similarity=0.144 Sum_probs=80.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-----CCCCeEEEEccHHHHHHhhcccCccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----QDKSLKVHITDGIKFVREMKSSSATD 602 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-----~~~rl~v~i~Da~~~l~~~~~~~~~~ 602 (759)
+...+||.||+|.|.++..+... ..++++||+++.+++.|++.+.-. ...+++++.+|+.++ .
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~----~------ 96 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL----S------ 96 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC----C------
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc----C------
Confidence 35579999999999999988887 469999999999999999987421 124689999986542 1
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.....||+|++.. ....+ +..-.-..+|+.+++.|+|||.+++....+
T Consensus 97 -----------------------~~~~~~D~v~~~~----~l~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 97 -----------------------FHDSSFDFAVMQA----FLTSV---PDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp -----------------------SCTTCEEEEEEES----CGGGC---CCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred -----------------------CCCCceeEEEEcc----hhhcC---CCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 1136799999831 10001 110111279999999999999999876554
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=9.6e-07 Score=90.02 Aligned_cols=103 Identities=17% Similarity=0.276 Sum_probs=76.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|.|.++..|....+ .+|++||+++.+++.|++.+....-++++++.+|+.. ...
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~~----------- 154 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK---GFP----------- 154 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG---CCG-----------
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc---CCC-----------
Confidence 3456999999999999999988877 7999999999999999998621111359999999721 111
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
....||+|+++..- ..+. ..+.+.|+|||.+++.+...
T Consensus 155 -------------------~~~~fD~Ii~~~~~-----------~~~~-----~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 155 -------------------PKAPYDVIIVTAGA-----------PKIP-----EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp -------------------GGCCEEEEEECSBB-----------SSCC-----HHHHHTEEEEEEEEEEECSS
T ss_pred -------------------CCCCccEEEECCcH-----------HHHH-----HHHHHhcCCCcEEEEEEecC
Confidence 02459999984311 1121 36788999999999988654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.6e-06 Score=93.73 Aligned_cols=142 Identities=18% Similarity=0.144 Sum_probs=96.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|+|.|.++..+... ..+|++||+|+.+++.|++.+... .-.++++.+|+.+....
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~-~~~v~~~~~D~~~~~~~-------------- 295 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEAN-ALKAQALHSDVDEALTE-------------- 295 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHT-TCCCEEEECSTTTTSCT--------------
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHc-CCCeEEEEcchhhcccc--------------
Confidence 4569999999999999888887 459999999999999999987321 12389999997665211
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHH
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 688 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v 688 (759)
..+||+|+++.--. . +.. ...-.-..+++.+++.|+|||.+++-... ... .
T Consensus 296 -------------------~~~fD~Ii~npp~~--~-~~~--~~~~~~~~~l~~~~~~LkpGG~l~iv~n~-~l~----~ 346 (381)
T 3dmg_A 296 -------------------EARFDIIVTNPPFH--V-GGA--VILDVAQAFVNVAAARLRPGGVFFLVSNP-FLK----Y 346 (381)
T ss_dssp -------------------TCCEEEEEECCCCC--T-TCS--SCCHHHHHHHHHHHHHEEEEEEEEEEECT-TSC----H
T ss_pred -------------------CCCeEEEEECCchh--h-ccc--ccHHHHHHHHHHHHHhcCcCcEEEEEEcC-CCC----h
Confidence 26799999953110 0 000 00112357999999999999999876532 222 2
Q ss_pred HHHHHHhcCceEEEeecCCccEEEEEecCC
Q 004354 689 ISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 718 (759)
Q Consensus 689 ~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~ 718 (759)
-..+.+.|..+-.+ .+..=.|+-+.+.+
T Consensus 347 ~~~l~~~f~~v~~l--~~~gF~Vl~a~~~~ 374 (381)
T 3dmg_A 347 EPLLEEKFGAFQTL--KVAEYKVLFAEKRG 374 (381)
T ss_dssp HHHHHHHHSCCEEE--EESSSEEEEEECC-
T ss_pred HHHHHHhhccEEEE--eCCCEEEEEEEEec
Confidence 45566788887776 33344555555443
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.3e-06 Score=81.01 Aligned_cols=134 Identities=11% Similarity=0.138 Sum_probs=86.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||.|+|.++..|.... +|++||+++.+++. .++++++.+|+.+.+.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~~--------------- 75 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---------HRGGNLVRADLLCSIN--------------- 75 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---------CSSSCEEECSTTTTBC---------------
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---------ccCCeEEECChhhhcc---------------
Confidence 44699999999999999998875 99999999999988 3578999999765311
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCC---CCCChHHHHHHHHHccCcCcEEEEEecCCChhHH
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA---ADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 685 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp---~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~ 685 (759)
..+||+|+.+.-- .....++ ..--..+++..+.+.| |||.+++-..... ..
T Consensus 76 -------------------~~~fD~i~~n~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~--~~ 129 (170)
T 3q87_B 76 -------------------QESVDVVVFNPPY----VPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN--RP 129 (170)
T ss_dssp -------------------GGGCSEEEECCCC----BTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG--CH
T ss_pred -------------------cCCCCEEEECCCC----ccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC--CH
Confidence 2579999994310 0000000 0001246888888888 9999987654332 22
Q ss_pred HHHHHHHHHh-cCceEEEeecCCccEEEEEe
Q 004354 686 DMVISRMKMV-FNHLFCLQLEEDVNLVLFGL 715 (759)
Q Consensus 686 ~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~ 715 (759)
+.+.+.+++. |..+...........++...
T Consensus 130 ~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~ 160 (170)
T 3q87_B 130 KEVLARLEERGYGTRILKVRKILGETVYIIK 160 (170)
T ss_dssp HHHHHHHHHTTCEEEEEEEEECSSSEEEEEE
T ss_pred HHHHHHHHHCCCcEEEEEeeccCCceEEEEE
Confidence 3455556554 65544444334444444443
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.28 E-value=2e-06 Score=94.44 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=78.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||.|.|.++.++... +..+|++||++ .+++.|++.+ |+ .++++++.+|+.++. .
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~--~--------- 126 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNL--DHIVEVIEGSVEDIS--L--------- 126 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTC--TTTEEEEESCGGGCC--C---------
T ss_pred CCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCC--CCeEEEEECchhhcC--c---------
Confidence 45679999999999999999987 34499999999 9999999887 44 578999999986541 0
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
..+||+|+.+...-- ....-.-..++..+.+.|+|||+|++
T Consensus 127 -----------------------~~~~D~Iv~~~~~~~-------l~~e~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 127 -----------------------PEKVDVIISEWMGYF-------LLRESMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp -----------------------SSCEEEEEECCCBTT-------BTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred -----------------------CCcceEEEEcChhhc-------ccchHHHHHHHHHHHhhCCCCeEEEE
Confidence 157999999541110 11111236689999999999999974
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-06 Score=93.06 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=93.7
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.||+|.|.+...+....|..+|++||+++.+++.|++.+.. .+...+++.+|+.++.
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~-~~~~~~~~~~d~~~~~----------------- 258 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAA-NGVEGEVFASNVFSEV----------------- 258 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHH-TTCCCEEEECSTTTTC-----------------
T ss_pred CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-hCCCCEEEEccccccc-----------------
Confidence 4689999999999999999998888999999999999999998732 1223678888876531
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHH
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 689 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~ 689 (759)
..+||+|+.+. .-. .++. ...-....+++.+++.|+|||.|++-... ... .-
T Consensus 259 ------------------~~~fD~Iv~~~--~~~-~g~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~-~~~----~~ 310 (343)
T 2pjd_A 259 ------------------KGRFDMIISNP--PFH-DGMQ--TSLDAAQTLIRGAVRHLNSGGELRIVANA-FLP----YP 310 (343)
T ss_dssp ------------------CSCEEEEEECC--CCC-SSSH--HHHHHHHHHHHHHGGGEEEEEEEEEEEET-TSS----HH
T ss_pred ------------------cCCeeEEEECC--Ccc-cCcc--CCHHHHHHHHHHHHHhCCCCcEEEEEEcC-CCC----cH
Confidence 25799999832 100 0000 00001367999999999999988864322 111 12
Q ss_pred HHHHHhcCceEEEeecCCccEEEEEec
Q 004354 690 SRMKMVFNHLFCLQLEEDVNLVLFGLS 716 (759)
Q Consensus 690 ~~l~~vF~~v~~~~~~~~~N~Vl~a~~ 716 (759)
..+...|..+..+. .+..-.|+-+.+
T Consensus 311 ~~l~~~f~~~~~~~-~~~gf~v~~~~k 336 (343)
T 2pjd_A 311 DVLDETFGFHEVIA-QTGRFKVYRAIM 336 (343)
T ss_dssp HHHHHHHSCCEEEE-ECSSEEEEEEEC
T ss_pred HHHHHhcCceEEEe-eCCCEEEEEEEe
Confidence 44566777765544 333444555544
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.27 E-value=2.9e-06 Score=94.83 Aligned_cols=133 Identities=16% Similarity=0.172 Sum_probs=95.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.+|.|.|..+..|...++..+|+++|+++..++.+++.+ |+ +++++.+|+.++.....
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~----~~~~~~~D~~~~~~~~~-------- 312 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM----KATVKQGDGRYPSQWCG-------- 312 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC----CCEEEECCTTCTHHHHT--------
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC----CeEEEeCchhhchhhcc--------
Confidence 3456999999999999999999988789999999999999999886 44 37899999877643322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--------------ChHHHHHHHHHccCcC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--------------~~~~fl~~~~~~L~~~ 670 (759)
+..||+|++|+-.+. .|+....+.. +...+|+.+.+.|+||
T Consensus 313 -----------------------~~~fD~Vl~D~Pcsg--~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpG 367 (429)
T 1sqg_A 313 -----------------------EQQFDRILLDAPCSA--TGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG 367 (429)
T ss_dssp -----------------------TCCEEEEEEECCCCC--GGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred -----------------------cCCCCEEEEeCCCCc--ccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 257999999984432 1211111111 1258899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhcC
Q 004354 671 GLFIVNLVSRSQATKDMVISRMKMVFN 697 (759)
Q Consensus 671 Gilv~N~~~~~~~~~~~v~~~l~~vF~ 697 (759)
|.|++-..+......+.++..+-+.++
T Consensus 368 G~lvystcs~~~~ene~~v~~~l~~~~ 394 (429)
T 1sqg_A 368 GTLVYATCSVLPEENSLQIKAFLQRTA 394 (429)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHHHCT
T ss_pred CEEEEEECCCChhhHHHHHHHHHHhCC
Confidence 999987655544433445555444444
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-06 Score=92.98 Aligned_cols=103 Identities=19% Similarity=0.168 Sum_probs=77.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||+|.|.++..+....+ ..+|++||+++.+++.|++.+....-++++++.+|+.+.+..
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~------------ 141 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE------------ 141 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG------------
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc------------
Confidence 3457999999999999998888766 367999999999999999987211113599999998764221
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
...||+|+++.--. ++. +.+.+.|+|||++++.+.+
T Consensus 142 ---------------------~~~fD~Iv~~~~~~-----------~~~-----~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 142 ---------------------FSPYDVIFVTVGVD-----------EVP-----ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp ---------------------GCCEEEEEECSBBS-----------CCC-----HHHHHHEEEEEEEEEEBCB
T ss_pred ---------------------CCCeEEEEEcCCHH-----------HHH-----HHHHHhcCCCcEEEEEECC
Confidence 25699999953211 111 5778899999999998744
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.7e-06 Score=82.25 Aligned_cols=152 Identities=13% Similarity=0.080 Sum_probs=87.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC--CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP--FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p--~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
...+||.||.|.|.++..|...+| ..+|++||++|.. ..++++++.+|..+.....- ...+.
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~-----~~~~~ 85 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNI-----KNINY 85 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC----------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhh-----ccccc
Confidence 346899999999999999999887 5799999999931 13568999998765310000 00000
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC----ChHHHHHHHHHccCcCcEEEEEecCCCh
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNLVSRSQ 682 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f----~~~~fl~~~~~~L~~~Gilv~N~~~~~~ 682 (759)
+...... ........ ......||+|+.|..-.. .|...+ ... ....+++.+.+.|+|||.|++.++....
T Consensus 86 i~~~~~~-~~~~~~~~--~~~~~~fD~v~~~~~~~~--~g~~~~-d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 159 (201)
T 2plw_A 86 IDNMNNN-SVDYKLKE--ILQDKKIDIILSDAAVPC--IGNKID-DHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQ 159 (201)
T ss_dssp ------C-HHHHHHHH--HHTTCCEEEEEECCCCCC--CSCHHH-HHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTT
T ss_pred cccccch-hhHHHHHh--hcCCCcccEEEeCCCcCC--CCCccc-CHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCC
Confidence 0000000 00000000 001357999999652110 111000 000 0124788899999999999998765432
Q ss_pred hHHHHHHHHHHHhcCceEEEee
Q 004354 683 ATKDMVISRMKMVFNHLFCLQL 704 (759)
Q Consensus 683 ~~~~~v~~~l~~vF~~v~~~~~ 704 (759)
...+...+...|..+..++.
T Consensus 160 --~~~l~~~l~~~f~~v~~~~~ 179 (201)
T 2plw_A 160 --TNNLKTYLKGMFQLVHTTKP 179 (201)
T ss_dssp --HHHHHHHHHTTEEEEEECCC
T ss_pred --HHHHHHHHHHHHheEEEECC
Confidence 23567778888887766553
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.1e-06 Score=87.82 Aligned_cols=101 Identities=20% Similarity=0.301 Sum_probs=78.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..+...+|..+++++|++ .+++.|++.+ |+ .++++++.+|..+. ..
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~--~~--------- 229 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV--ASRYHTIAGSAFEV--DY--------- 229 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC--GGGEEEEESCTTTS--CC---------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC--CcceEEEecccccC--CC---------
Confidence 45679999999999999999999999999999999 9999999986 44 45899999986542 11
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC---hHHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~---~~~fl~~~~~~L~~~Gilv~N 676 (759)
...||+|++ ... ...+- -..+|+.+++.|+|||.+++.
T Consensus 230 -----------------------~~~~D~v~~----~~~-------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 270 (335)
T 2r3s_A 230 -----------------------GNDYDLVLL----PNF-------LHHFDVATCEQLLRKIKTALAVEGKVIVF 270 (335)
T ss_dssp -----------------------CSCEEEEEE----ESC-------GGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----------------------CCCCcEEEE----cch-------hccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 134999998 110 11121 257999999999999966654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=9e-06 Score=88.32 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=78.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..+...+|..+++++|+ |.+++.|++.+ ++ .+|++++.+|..+. .
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~----~-------- 253 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV--ADRMRGIAVDIYKE----S-------- 253 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC--TTTEEEEECCTTTS----C--------
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC--CCCEEEEeCccccC----C--------
Confidence 4567999999999999999999999999999999 99999999887 44 46899999996543 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC---hHHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~---~~~fl~~~~~~L~~~Gilv~N 676 (759)
-..+|+|++.- . -..+- -..+|+.+++.|+|||.|++.
T Consensus 254 -----------------------~~~~D~v~~~~----v-------lh~~~d~~~~~~l~~~~~~L~pgG~l~i~ 294 (359)
T 1x19_A 254 -----------------------YPEADAVLFCR----I-------LYSANEQLSTIMCKKAFDAMRSGGRLLIL 294 (359)
T ss_dssp -----------------------CCCCSEEEEES----C-------GGGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred -----------------------CCCCCEEEEec----h-------hccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 12249998821 0 11122 267899999999999988654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.9e-06 Score=93.25 Aligned_cols=103 Identities=10% Similarity=0.068 Sum_probs=79.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-l~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
..+||.||+|.|.+...+...+|..+++++|+ |.+++.|++++. ....+|++++.+|..+.-...
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------------- 245 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE------------- 245 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT-------------
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC-------------
Confidence 78999999999999999999999999999999 999999998862 112568999999965431001
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~N 676 (759)
...||+|++ ... -..+-+ ..+|+.+++.|+|||.|++.
T Consensus 246 -------------------~~~~D~v~~----~~v-------lh~~~~~~~~~~l~~~~~~L~pgG~l~i~ 286 (352)
T 3mcz_A 246 -------------------GGAADVVML----NDC-------LHYFDAREAREVIGHAAGLVKPGGALLIL 286 (352)
T ss_dssp -------------------TCCEEEEEE----ESC-------GGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred -------------------CCCccEEEE----ecc-------cccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 245999998 111 111222 57999999999999988765
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.6e-06 Score=90.70 Aligned_cols=125 Identities=14% Similarity=0.194 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEE
Q 004354 505 SYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVH 584 (759)
Q Consensus 505 ~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~ 584 (759)
.|.++|..........+.....-....+||.||+|.|.+...|.+.+|..++++.|+ |.|++.|+++......+|++++
T Consensus 155 ~f~~aM~~~~~~~~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~ 233 (353)
T 4a6d_A 155 QFMQALQEVWSVNGRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQ 233 (353)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeee
Confidence 466666533222222121112224557899999999999999999999999999998 9999999999866557899999
Q ss_pred EccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHH
Q 004354 585 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLL 661 (759)
Q Consensus 585 i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~ 661 (759)
.+|..+ . . ...+|+|++ ... -..+-+ ..+|+
T Consensus 234 ~gD~~~---~-~-------------------------------~~~~D~~~~----~~v-------lh~~~d~~~~~iL~ 267 (353)
T 4a6d_A 234 EGDFFK---D-P-------------------------------LPEADLYIL----ARV-------LHDWADGKCSHLLE 267 (353)
T ss_dssp ESCTTT---S-C-------------------------------CCCCSEEEE----ESS-------GGGSCHHHHHHHHH
T ss_pred cCcccc---C-C-------------------------------CCCceEEEe----eee-------cccCCHHHHHHHHH
Confidence 999532 1 1 245799887 110 011112 46899
Q ss_pred HHHHccCcCcEEEEE
Q 004354 662 TVKDALSEQGLFIVN 676 (759)
Q Consensus 662 ~~~~~L~~~Gilv~N 676 (759)
++++.|+|||.+++.
T Consensus 268 ~~~~al~pgg~lli~ 282 (353)
T 4a6d_A 268 RIYHTCKPGGGILVI 282 (353)
T ss_dssp HHHHHCCTTCEEEEE
T ss_pred HHHhhCCCCCEEEEE
Confidence 999999999966553
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-05 Score=91.29 Aligned_cols=164 Identities=11% Similarity=0.043 Sum_probs=112.5
Q ss_pred ccccchhhhHHHHHHhhcCC-CCCCCCeEEEECCCcchhHHHHHHh----CCCeEEEEeCCHHHHHHHHHHhccCC---C
Q 004354 45 EWYAEWPQLRDPLISLIGAP-TSSPPPQILVPGCGNSRLSEHLYDA----GFHGITNVDFSKVVISDMLRRNVRDR---S 116 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~-~~~~~~~ILDlGCG~G~ls~~L~~~----G~~~VtgIDiS~~~I~~a~~r~~~~~---~ 116 (759)
+.|.+ ..+...+.+.+... .+.++.+|||.+||+|.+...+++. +...++|+|+++.++..|+.++.-.+ .
T Consensus 198 ~fyTP-~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~ 276 (542)
T 3lkd_A 198 EFYTP-QPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIE 276 (542)
T ss_dssp SCCCC-HHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGG
T ss_pred eeccc-HHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcC
Confidence 44544 45666676766521 1246789999999999999888765 23469999999999998887654333 3
Q ss_pred CcEEEEeecccC--C----CcccEEEeCCCC--hh-----------------H------HHHHHHHHHHhcc-cCcEEEE
Q 004354 117 DMRWRVMDMTSM--Q----GGLDALMEPELG--HK-----------------L------GNQYLSEVKRLLK-SGGKFVC 164 (759)
Q Consensus 117 ~i~f~~~D~~~~--~----gtfD~Ii~~~~~--~~-----------------~------~~~~l~ei~rvLk-pGG~lii 164 (759)
++.+.++|.... + ..||+|++++.. .+ . --.++..+.+.|+ |||++.+
T Consensus 277 ~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~ 356 (542)
T 3lkd_A 277 NQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAI 356 (542)
T ss_dssp GEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred ccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEE
Confidence 578999998765 3 689999997411 00 0 1248899999999 9999988
Q ss_pred EEcCc--------hhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCC
Q 004354 165 LTLAE--------SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKEN 212 (759)
Q Consensus 165 it~~~--------~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~ 212 (759)
+.... ..+++.++.. ++...+..++..--.+.+.+..+++++|.+
T Consensus 357 VlP~g~Lf~~~~~~~iRk~Lle~---~~l~~II~LP~~lF~~t~i~t~Ilvl~K~k 409 (542)
T 3lkd_A 357 VLPHGVLFRGNAEGTIRKALLEE---GAIDTVIGLPANIFFNTSIPTTVIILKKNR 409 (542)
T ss_dssp EEETHHHHCCTHHHHHHHHHHHT---TCEEEEEECCSSCSSSCCCCEEEEEECSSC
T ss_pred EecchHhhCCchhHHHHHHHHhC---CceeEEEEccccccCCCCCcEEEEEEecCC
Confidence 87432 1234444433 455556666543223567889999999876
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.7e-07 Score=90.63 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=73.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|.|.++..|... ..+|++||+++.+++.|++. .++++++.+|+.+.+.
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~--------------- 105 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELP--------------- 105 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCC---------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccC---------------
Confidence 4579999999999999999887 46999999999999999998 2479999999653211
Q ss_pred ccccccCCCCCCCCCCCCC-CCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 609 GNEITSNNTRSCNGNCTAS-NARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~-~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
.. ...||+|+.. .+ + ..+|+.+.+.|+|||.|+
T Consensus 106 -----------------~~~~~~fD~v~~~---~~--------~-----~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 106 -----------------AGLGAPFGLIVSR---RG--------P-----TSVILRLPELAAPDAHFL 139 (226)
T ss_dssp -----------------TTCCCCEEEEEEE---SC--------C-----SGGGGGHHHHEEEEEEEE
T ss_pred -----------------CcCCCCEEEEEeC---CC--------H-----HHHHHHHHHHcCCCcEEE
Confidence 11 3679999985 11 1 357789999999999998
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.9e-06 Score=81.07 Aligned_cols=128 Identities=14% Similarity=0.146 Sum_probs=86.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC---------CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEE-EccHHHHHH--hhc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPF---------VGIEAVELDLTMLNLAEDYFGFTQDKSLKVH-ITDGIKFVR--EMK 596 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~---------~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~-i~Da~~~l~--~~~ 596 (759)
...+||+||.|.|.++..|...++. .+|++||+++.. . .++++++ .+|....-. ...
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~---~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------P---LEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------C---CTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------c---CCCCeEEEeccCCCHHHHHHHH
Confidence 4579999999999999999998764 699999999941 1 2468888 888544311 100
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh--------HHHHHHHHHccC
Q 004354 597 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE--------GSFLLTVKDALS 668 (759)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~--------~~fl~~~~~~L~ 668 (759)
. ...+.+||+|+.|.... . .+ ....+ ..+++.+.+.|+
T Consensus 91 ~---------------------------~~~~~~fD~V~~~~~~~-~-~~-----~~~~~~~~~~~~~~~~l~~~~~~Lk 136 (196)
T 2nyu_A 91 E---------------------------VLPGRRADVILSDMAPN-A-TG-----FRDLDHDRLISLCLTLLSVTPDILQ 136 (196)
T ss_dssp H---------------------------HSGGGCEEEEEECCCCC-C-CS-----CHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred H---------------------------hcCCCCCcEEEeCCCCC-C-CC-----CcccCHHHHHHHHHHHHHHHHHHhc
Confidence 0 00124799999975211 0 00 11111 378999999999
Q ss_pred cCcEEEEEecCCChhHHHHHHHHHHHhcCceEEEe
Q 004354 669 EQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQ 703 (759)
Q Consensus 669 ~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~ 703 (759)
|||.|++..+.... ...+...++..|..+..++
T Consensus 137 pgG~lv~~~~~~~~--~~~~~~~l~~~f~~v~~~~ 169 (196)
T 2nyu_A 137 PGGTFLCKTWAGSQ--SRRLQRRLTEEFQNVRIIK 169 (196)
T ss_dssp EEEEEEEEECCSGG--GHHHHHHHHHHEEEEEEEC
T ss_pred CCCEEEEEecCCcc--HHHHHHHHHHHhcceEEEC
Confidence 99999998765432 2456777888898876665
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.24 E-value=9e-06 Score=93.46 Aligned_cols=162 Identities=9% Similarity=0.046 Sum_probs=108.5
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh--------C--------CCeEEEEeCCHHHHHHHH
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------G--------FHGITNVDFSKVVISDML 108 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~--------G--------~~~VtgIDiS~~~I~~a~ 108 (759)
+.|.+ ..+...+.+.+.. ...+|||.+||+|.+...+++. + -..++|+|+++.++..|+
T Consensus 226 ~fyTP-~~Vv~lmv~ll~p----~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~ 300 (544)
T 3khk_A 226 QYYTP-KSIVTLIVEMLEP----YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAA 300 (544)
T ss_dssp TTCCC-HHHHHHHHHHHCC----CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHH
T ss_pred eEeCC-HHHHHHHHHHHhc----CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHH
Confidence 34443 5666777777754 2349999999999998776432 1 225999999999999988
Q ss_pred HHhccCCC--CcEEEEeecccCC----CcccEEEeCCCCh---h----------------------H------HHHHHHH
Q 004354 109 RRNVRDRS--DMRWRVMDMTSMQ----GGLDALMEPELGH---K----------------------L------GNQYLSE 151 (759)
Q Consensus 109 ~r~~~~~~--~i~f~~~D~~~~~----gtfD~Ii~~~~~~---~----------------------~------~~~~l~e 151 (759)
.++.-.+. ++.+.++|....+ ..||+|++++... + . --.++..
T Consensus 301 ~Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~ 380 (544)
T 3khk_A 301 MNMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLH 380 (544)
T ss_dssp HHHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHH
T ss_pred HHHHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHH
Confidence 77643332 2334778866544 6899999975211 0 0 1268899
Q ss_pred HHHhcccCcEEEEEEcC-----c----hhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCCc
Q 004354 152 VKRLLKSGGKFVCLTLA-----E----SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSS 214 (759)
Q Consensus 152 i~rvLkpGG~liiit~~-----~----~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~~ 214 (759)
+.+.|+|||++.++... . ..+++.++.. ++...+..++..--.+.+.+..+++++|.++.
T Consensus 381 ~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~---~~l~aII~LP~~lF~~t~i~t~Ilvl~K~k~~ 449 (544)
T 3khk_A 381 MLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQ---DLVECMVALPGQLFTNTQIPACIWFLTKDKNA 449 (544)
T ss_dssp HHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHT---TCEEEEEECCTTBCCSCSSCEEEEEEESCCSS
T ss_pred HHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhC---CcHhEEEECCCCCCCCCCCCeEEEEEecCCCc
Confidence 99999999999888632 1 1344444443 45555666654322356788999999997753
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.7e-06 Score=88.62 Aligned_cols=116 Identities=17% Similarity=0.158 Sum_probs=75.4
Q ss_pred CCCeEEEEcccccHHHH----HHHHhCCCCcE--EEEEcCHHHHHHHHhhcCC-CCCCCe--EEEEccHHHHHHhhcccC
Q 004354 529 KSVKAVVIGLGAGLLPM----FLHECMPFVGI--EAVELDLTMLNLAEDYFGF-TQDKSL--KVHITDGIKFVREMKSSS 599 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~----~L~~~~p~~~i--~~VEiDp~v~~vA~~~Fgl-~~~~rl--~v~i~Da~~~l~~~~~~~ 599 (759)
.+.+||.||+|+|.++. .+...+|...| ++||+++.|++.|++.+.- ..-+++ .+..+|+.++......
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-- 129 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE-- 129 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT--
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc--
Confidence 45699999999996553 33344466655 9999999999999998631 111334 4556777665432110
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 600 ATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
+..+.+||+|+. ......+.. -..+|+.+++.|+|||.|++-..+
T Consensus 130 -------------------------~~~~~~fD~V~~----~~~l~~~~d------~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 130 -------------------------KKELQKWDFIHM----IQMLYYVKD------IPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp -------------------------TTCCCCEEEEEE----ESCGGGCSC------HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred -------------------------ccCCCceeEEEE----eeeeeecCC------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 001367999997 211111111 266999999999999999987655
Q ss_pred CC
Q 004354 680 RS 681 (759)
Q Consensus 680 ~~ 681 (759)
.+
T Consensus 175 ~~ 176 (292)
T 2aot_A 175 GS 176 (292)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=8.8e-06 Score=88.64 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=79.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..|...+|..+++++|+ |.+++.|++.+ |+ .++++++.+|..+ ...
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~---~~~-------- 246 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL--ADRVTVAEGDFFK---PLP-------- 246 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTTS---CCS--------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC--CCceEEEeCCCCC---cCC--------
Confidence 4567999999999999999999999899999999 99999999886 44 4589999999653 111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEEEec
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
..||+|++.- . -..+-+ ..+|+.+++.|+|||.|++.-.
T Consensus 247 ------------------------~~~D~v~~~~----v-------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 247 ------------------------VTADVVLLSF----V-------LLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp ------------------------CCEEEEEEES----C-------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ------------------------CCCCEEEEec----c-------ccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 2499999821 0 111222 3799999999999998776543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.2e-06 Score=89.77 Aligned_cols=104 Identities=11% Similarity=0.081 Sum_probs=77.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|.|.++..|... ..+|++||+++.+++.|++.+... .-+++++.+|+.++..
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~--------------- 181 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKE-NLNISTALYDINAANI--------------- 181 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCGGGCCC---------------
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHc-CCceEEEEeccccccc---------------
Confidence 5679999999999999998887 459999999999999999987321 1279999999765311
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+||+|+... ...-+ +++ .-..+++.+++.|+|||.+++-.
T Consensus 182 -------------------~~~fD~i~~~~----~~~~~--~~~--~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 182 -------------------QENYDFIVSTV----VFMFL--NRE--RVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp -------------------CSCEEEEEECS----SGGGS--CGG--GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -------------------cCCccEEEEcc----chhhC--CHH--HHHHHHHHHHHhcCCCcEEEEEE
Confidence 36799999832 10000 111 12579999999999999877643
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.9e-06 Score=85.14 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=77.0
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccc
Q 004354 532 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 611 (759)
Q Consensus 532 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~ 611 (759)
+||.||+|.|.++..|... ..++++||+++.+++.|++.+.- ...+++++.+|+.++ .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~d~~~~----~--------------- 89 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQE-KGVKITTVQSNLADF----D--------------- 89 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHH-HTCCEEEECCBTTTB----S---------------
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHh-cCCceEEEEcChhhc----C---------------
Confidence 9999999999999888876 35999999999999999998721 112689998886543 1
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 612 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.....||+|+... .- + ++. .-..+|+.+++.|+|||.+++.....
T Consensus 90 --------------~~~~~fD~v~~~~-~~-----~--~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 90 --------------IVADAWEGIVSIF-CH-----L--PSS--LRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp --------------CCTTTCSEEEEEC-CC-----C--CHH--HHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred --------------CCcCCccEEEEEh-hc-----C--CHH--HHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 0136799999721 10 0 111 13679999999999999999887543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-06 Score=85.68 Aligned_cols=100 Identities=20% Similarity=0.323 Sum_probs=77.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..|.... .++++||+++.+++.|++.+.-. .+++++.+|+.+.+. .
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~--~----------- 131 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYY--NNIKLILGDGTLGYE--E----------- 131 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTC--SSEEEEESCGGGCCG--G-----------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhc--CCeEEEECCcccccc--c-----------
Confidence 345699999999999999998885 69999999999999999998532 289999999865211 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
...||+|+++..- .++. ..+.+.|+|||.+++.....
T Consensus 132 --------------------~~~fD~v~~~~~~-----------~~~~-----~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 132 --------------------EKPYDRVVVWATA-----------PTLL-----CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp --------------------GCCEEEEEESSBB-----------SSCC-----HHHHHTEEEEEEEEEEECSS
T ss_pred --------------------CCCccEEEECCcH-----------HHHH-----HHHHHHcCCCcEEEEEEcCC
Confidence 2579999985311 1122 46889999999999887544
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.22 E-value=4.9e-07 Score=93.12 Aligned_cols=46 Identities=22% Similarity=0.156 Sum_probs=40.6
Q ss_pred CCCeEEEEcccccHHHHHHHHh--CCCCcEEEEEcCHHHHHHHHhhcC
Q 004354 529 KSVKAVVIGLGAGLLPMFLHEC--MPFVGIEAVELDLTMLNLAEDYFG 574 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~--~p~~~i~~VEiDp~v~~vA~~~Fg 574 (759)
.+.+||.+|+|+|.++..+... .+..+|++||+|+.++++|++...
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~ 98 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLA 98 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHH
Confidence 4579999999999999988887 566799999999999999997763
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=6e-06 Score=87.19 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=81.6
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhc------cCCCCcEEEEeecccCC----CcccEEE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV------RDRSDMRWRVMDMTSMQ----GGLDALM 136 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~------~~~~~i~f~~~D~~~~~----gtfD~Ii 136 (759)
...+||-||.|.|..+..+++. +..+|+.+||++.+++.+++.+. -..++++++.+|....- ++||+|+
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi 162 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII 162 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence 5679999999999999999886 55789999999999999987652 23578999999998775 7899999
Q ss_pred eCCCCh-----hH-HHHHHHHHHHhcccCcEEEEEE
Q 004354 137 EPELGH-----KL-GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 137 ~~~~~~-----~~-~~~~l~ei~rvLkpGG~liiit 166 (759)
...... .. -..+++.+++.|+|||+++.-+
T Consensus 163 ~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 163 SDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp ESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 854211 11 4679999999999999999864
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.4e-06 Score=87.48 Aligned_cols=110 Identities=13% Similarity=0.021 Sum_probs=74.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHH----HHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL----AEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~v----A~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.||+|+|.++..|...+|..+|++||+++.+++. |++......-++++++.+|+.+. .
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l----~------- 94 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL----P------- 94 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC----C-------
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC----C-------
Confidence 34578999999999999999999999999999999998875 33332111235799999997652 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCC-CCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS-SGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~-~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..... |.|++.+...... .-+ + -...+|+.+++.|+|||.|++.+
T Consensus 95 ----------------------~~~~~-d~v~~~~~~~~~~~~~~--~----~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 95 ----------------------PLSGV-GELHVLMPWGSLLRGVL--G----SSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp ----------------------SCCCE-EEEEEESCCHHHHHHHH--T----SSSHHHHHHHHTEEEEEEEEEEE
T ss_pred ----------------------CCCCC-CEEEEEccchhhhhhhh--c----cHHHHHHHHHHHcCCCcEEEEEe
Confidence 01233 7666433110000 000 0 01679999999999999999854
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.3e-06 Score=90.66 Aligned_cols=97 Identities=20% Similarity=0.197 Sum_probs=77.1
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.+||.||+|.|.++..+...+|..+++++|+ |.+++.|++.+ |+ .++++++.+|..+ ..
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~---~~------------ 230 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA--GERVSLVGGDMLQ---EV------------ 230 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH--TTSEEEEESCTTT---CC------------
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC--CCcEEEecCCCCC---CC------------
Confidence 8999999999999999999999999999999 99999999986 33 4689999998644 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~N 676 (759)
...||+|++-- . -..+-+ ..+|+.+++.|+|||.|++.
T Consensus 231 --------------------~~~~D~v~~~~----v-------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 271 (334)
T 2ip2_A 231 --------------------PSNGDIYLLSR----I-------IGDLDEAASLRLLGNCREAMAGDGRVVVI 271 (334)
T ss_dssp --------------------CSSCSEEEEES----C-------GGGCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred --------------------CCCCCEEEEch----h-------ccCCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 14699999721 0 011111 37999999999999988776
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=6.9e-07 Score=94.05 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=78.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.+|.|.|.++..+... +..+|++||+||..++.|++.. |+ .++++++.+|+.++..
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v--~~~v~~~~~D~~~~~~----------- 189 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKV--EDRMSAYNMDNRDFPG----------- 189 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCTTTCCC-----------
T ss_pred CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEeCcHHHhcc-----------
Confidence 34578999999999888777766 4568999999999999999987 54 5789999999987632
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
...||.||+|.. + ...+||..+.++|++||++.+-
T Consensus 190 -----------------------~~~~D~Vi~~~p-----------~---~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 190 -----------------------ENIADRILMGYV-----------V---RTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp -----------------------CSCEEEEEECCC-----------S---SGGGGHHHHHHHEEEEEEEEEE
T ss_pred -----------------------ccCCCEEEECCC-----------C---cHHHHHHHHHHHcCCCCEEEEE
Confidence 257999998531 1 1357899999999999998764
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-06 Score=88.16 Aligned_cols=106 Identities=18% Similarity=0.257 Sum_probs=78.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.||+|.|.++..+... .++++||+++.+++.|++.+.- ...+++++.+|+.++ .
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~d~~~~----~------------- 92 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAME-TNRHVDFWVQDMREL----E------------- 92 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHH-TTCCCEEEECCGGGC----C-------------
T ss_pred CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhh-cCCceEEEEcChhhc----C-------------
Confidence 479999999999998888776 6999999999999999998732 125799999996543 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
....||+|++..+.-.. + +..---..+|+.+++.|+|||.+++.+..
T Consensus 93 -----------------~~~~fD~v~~~~~~~~~---~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 93 -----------------LPEPVDAITILCDSLNY---L---QTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp -----------------CSSCEEEEEECTTGGGG---C---CSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----------------CCCCcCEEEEeCCchhh---c---CCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 02579999983211100 0 00001256899999999999999998754
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.7e-06 Score=86.66 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=76.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|.|.++..+... + .++++||+++.+++.|++.+. +++.+|+.++..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~-------~~~~~d~~~~~~-------------- 87 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLD-------HVVLGDIETMDM-------------- 87 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSS-------EEEESCTTTCCC--------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCC-------cEEEcchhhcCC--------------
Confidence 35579999999999999988888 5 799999999999999998762 677787653210
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
...+..||+|++. .....+. -...+++.+++.|+|||.+++.....
T Consensus 88 -----------------~~~~~~fD~v~~~----~~l~~~~------~~~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 88 -----------------PYEEEQFDCVIFG----DVLEHLF------DPWAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp -----------------CSCTTCEEEEEEE----SCGGGSS------CHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred -----------------CCCCCccCEEEEC----ChhhhcC------CHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 0123679999972 1111111 12689999999999999999887543
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.6e-06 Score=95.90 Aligned_cols=101 Identities=8% Similarity=-0.150 Sum_probs=74.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC---CCCcEEEEeecccC-C----CcccEEEeCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD---RSDMRWRVMDMTSM-Q----GGLDALMEPE 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~---~~~i~f~~~D~~~~-~----gtfD~Ii~~~ 139 (759)
++.+|||+|||+|..+..|+..+. +|+++|+|+.+++.+++++... ..+++|+++|+.+. + +.||+|+++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDP 171 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDP 171 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECC
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECC
Confidence 468999999999999999988765 6999999999999998887543 25799999999885 2 5899999975
Q ss_pred CCh----------hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 140 LGH----------KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 140 ~~~----------~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
... .....-+..+.+.|...+..+++.+++
T Consensus 172 Prr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP 211 (410)
T 3ll7_A 172 ARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSP 211 (410)
T ss_dssp EEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECT
T ss_pred CCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCC
Confidence 211 111223455566555545555566554
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-06 Score=89.18 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=79.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+.+||.||+|+|.++..|... ..++++||+++.+++.|++.+.- ...+++++.+|..++ .
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~----~----------- 101 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKE-RNLKIEFLQGDVLEI----A----------- 101 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH-TTCCCEEEESCGGGC----C-----------
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHh-cCCceEEEECChhhc----c-----------
Confidence 34579999999999999888876 45999999999999999988732 123699999997653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
...+||+|++....... + ++. .-..+|+.+++.|+|||+|++.+.+
T Consensus 102 -------------------~~~~fD~v~~~~~~~~~---~--~~~--~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 102 -------------------FKNEFDAVTMFFSTIMY---F--DEE--DLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp -------------------CCSCEEEEEECSSGGGG---S--CHH--HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -------------------cCCCccEEEEcCCchhc---C--CHH--HHHHHHHHHHHHcCCCeEEEEeccc
Confidence 02569999973211100 0 000 1257899999999999999988753
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.1e-06 Score=93.70 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=78.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..+.+||.||+|.|.++..|.+.+|..+++++|+ |.+++.|++.+.-. ..+|++++.+|..+. +..
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~---------- 244 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDR--DVP---------- 244 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSS--SCC----------
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEcccccc--CCC----------
Confidence 3568999999999999999999999999999999 99999999987421 246899999995431 000
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~N 676 (759)
. ...||+|++ ... -..+-+ ..+|+.+++.|+|||.|++.
T Consensus 245 -------------------~-p~~~D~v~~----~~v-------lh~~~~~~~~~~l~~~~~~L~pgG~l~i~ 286 (363)
T 3dp7_A 245 -------------------F-PTGFDAVWM----SQF-------LDCFSEEEVISILTRVAQSIGKDSKVYIM 286 (363)
T ss_dssp -------------------C-CCCCSEEEE----ESC-------STTSCHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred -------------------C-CCCcCEEEE----ech-------hhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 0 146999997 111 011112 46899999999999988764
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.3e-06 Score=92.48 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=85.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~-~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.+|+|.|.++.. .. +..+|++||++|.+++.|++.+.... +++++++.+|+.+++
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--------------- 256 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--------------- 256 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------------
T ss_pred CCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------------
Confidence 447999999999999887 55 46699999999999999999873221 358999999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
.+||+|++|. |. + ..+++..+.+.|+|||++++...... ...
T Consensus 257 ---------------------~~fD~Vi~dp------------P~-~-~~~~l~~~~~~L~~gG~l~~~~~~~~---~~~ 298 (336)
T 2yx1_A 257 ---------------------VKGNRVIMNL------------PK-F-AHKFIDKALDIVEEGGVIHYYTIGKD---FDK 298 (336)
T ss_dssp ---------------------CCEEEEEECC------------TT-T-GGGGHHHHHHHEEEEEEEEEEEEESS---SHH
T ss_pred ---------------------CCCcEEEECC------------cH-h-HHHHHHHHHHHcCCCCEEEEEEeecC---chH
Confidence 2599999953 11 1 13799999999999998888655554 234
Q ss_pred HHHHHHHhc
Q 004354 688 VISRMKMVF 696 (759)
Q Consensus 688 v~~~l~~vF 696 (759)
+.+.+.+.+
T Consensus 299 ~~~~l~~~~ 307 (336)
T 2yx1_A 299 AIKLFEKKC 307 (336)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 566666664
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.8e-06 Score=89.03 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=80.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||+|.|.+...+... +..++++||+++.+++.|++.+.-. ...+++++.+|+.+. ...
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~---------- 129 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR--HMD---------- 129 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS--CCC----------
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc--ccC----------
Confidence 35579999999999877777776 4569999999999999999987321 235799999997653 000
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-ChHHHHHHHHHccCcCcEEEEEecC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
....||+|++..- +.....+. --..+|+.+++.|+|||.|++....
T Consensus 130 --------------------~~~~fD~v~~~~~-------l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 130 --------------------LGKEFDVISSQFS-------FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp --------------------CSSCEEEEEEESC-------GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred --------------------CCCCcCEEEECch-------hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1367999998420 10000000 1267999999999999999988754
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-06 Score=86.71 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=76.5
Q ss_pred CCCCeEEEEcccccHH-HHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLL-PMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l-~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||.|+|.+ ..++.. +..++++||+++.+++.|++.+.- ...+++++.+|+.+. .
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~d~~~~----~---------- 84 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRE-NNFKLNISKGDIRKL----P---------- 84 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHH-HTCCCCEEECCTTSC----C----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHh-cCCceEEEECchhhC----C----------
Confidence 3457999999999976 344433 356999999999999999988632 124688999987542 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.....||+|+.. .....+ |+. --..+++.+++.|+|||.+++...+.
T Consensus 85 -------------------~~~~~fD~v~~~----~~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 85 -------------------FKDESMSFVYSY----GTIFHM--RKN--DVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp -------------------SCTTCEEEEEEC----SCGGGS--CHH--HHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred -------------------CCCCceeEEEEc----ChHHhC--CHH--HHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 113679999972 111111 101 13678999999999999999887654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.15 E-value=4e-06 Score=86.91 Aligned_cols=98 Identities=12% Similarity=0.192 Sum_probs=77.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||+||.|+|.++..+...+|..++++||+++.+++.|++.+ +++.++.+|+.+. .
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~----~----------- 143 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRL----P----------- 143 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSC----S-----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhC----C-----------
Confidence 3457999999999999999998888789999999999999999885 4578898886432 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
..+..||+|+.- +. ..+++.+.+.|+|||.|++.....
T Consensus 144 ------------------~~~~~fD~v~~~-~~----------------~~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 144 ------------------FSDTSMDAIIRI-YA----------------PCKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ------------------BCTTCEEEEEEE-SC----------------CCCHHHHHHHEEEEEEEEEEEECT
T ss_pred ------------------CCCCceeEEEEe-CC----------------hhhHHHHHHhcCCCcEEEEEEcCH
Confidence 013579999961 11 125899999999999999876544
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=7.3e-07 Score=90.96 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=76.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.+|+|.|.++..+.... .+|++||+++.+++.|++.+... ..++++++.+|+.++. .
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~----------- 141 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---S----------- 141 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG---G-----------
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc---c-----------
Confidence 56799999999999999998863 79999999999999999887221 1358999999998875 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
...||+|++|.-- .+...+. ..+..+++.|+|||++++..
T Consensus 142 --------------------~~~~D~v~~~~~~----~~~~~~~------~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 142 --------------------FLKADVVFLSPPW----GGPDYAT------AETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp --------------------GCCCSEEEECCCC----SSGGGGG------SSSBCTTTSCSSCHHHHHHH
T ss_pred --------------------cCCCCEEEECCCc----CCcchhh------hHHHHHHhhcCCcceeHHHH
Confidence 2579999985311 1111111 14456788899999877553
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.3e-06 Score=90.92 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=59.1
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCH-------HHHHHHHHHhccCC--CCcEEEEeecccC-C------C
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK-------VVISDMLRRNVRDR--SDMRWRVMDMTSM-Q------G 130 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~-------~~I~~a~~r~~~~~--~~i~f~~~D~~~~-~------g 130 (759)
.++.+|||+|||+|.++..++..|. +|+++|+|+ .+++.++++..... .+++++++|+.++ + +
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 3567999999999999999999876 499999999 88988876543221 3499999998774 2 5
Q ss_pred cccEEEeCCC
Q 004354 131 GLDALMEPEL 140 (759)
Q Consensus 131 tfD~Ii~~~~ 140 (759)
+||+|+++..
T Consensus 161 ~fD~V~~dP~ 170 (258)
T 2r6z_A 161 KPDIVYLDPM 170 (258)
T ss_dssp CCSEEEECCC
T ss_pred CccEEEECCC
Confidence 7999999763
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=5.6e-06 Score=89.82 Aligned_cols=101 Identities=17% Similarity=0.298 Sum_probs=78.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..+...+|..+++++|+ |.+++.|++.+ |+ .++++++.+|..+ ...
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~---~~~-------- 247 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL--SDRVDVVEGDFFE---PLP-------- 247 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC--TTTEEEEECCTTS---CCS--------
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC--CCceEEEeCCCCC---CCC--------
Confidence 4567999999999999999999999889999999 99999999886 43 4589999999653 111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..||+|++.- . -.++-+ ..+|+.+++.|+|||.|++.-
T Consensus 248 ------------------------~~~D~v~~~~----v-------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e 288 (360)
T 1tw3_A 248 ------------------------RKADAIILSF----V-------LLNWPDHDAVRILTRCAEALEPGGRILIHE 288 (360)
T ss_dssp ------------------------SCEEEEEEES----C-------GGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ------------------------CCccEEEEcc----c-------ccCCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2499998721 0 111222 379999999999999777653
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.14 E-value=5.5e-06 Score=92.38 Aligned_cols=105 Identities=11% Similarity=0.045 Sum_probs=77.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHH-------Hhhc---CCCCCCCeEEEEccHHH---HHHh
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLA-------EDYF---GFTQDKSLKVHITDGIK---FVRE 594 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA-------~~~F---gl~~~~rl~v~i~Da~~---~l~~ 594 (759)
....+||.||+|.|.++..|....+..+|++||+++.+++.| ++.+ |+. -.+++++.+|+.. .+..
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~-~~nV~~i~gD~~~~~~~~~~ 319 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNNVEFSLKKSFVDNNRVAE 319 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCCEEEEESSCSTTCHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC-CCceEEEEcCcccccccccc
Confidence 455799999999999999999877777899999999999999 7664 531 2579999987652 1211
Q ss_pred hcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 595 MKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
.. ..||+|++...- . .+. -..+|..+.+.|+|||.|+
T Consensus 320 ~~--------------------------------~~FDvIvvn~~l------~---~~d--~~~~L~el~r~LKpGG~lV 356 (433)
T 1u2z_A 320 LI--------------------------------PQCDVILVNNFL------F---DED--LNKKVEKILQTAKVGCKII 356 (433)
T ss_dssp HG--------------------------------GGCSEEEECCTT------C---CHH--HHHHHHHHHTTCCTTCEEE
T ss_pred cc--------------------------------CCCCEEEEeCcc------c---ccc--HHHHHHHHHHhCCCCeEEE
Confidence 11 469999973111 0 011 2457889999999999888
Q ss_pred EE
Q 004354 675 VN 676 (759)
Q Consensus 675 ~N 676 (759)
+-
T Consensus 357 i~ 358 (433)
T 1u2z_A 357 SL 358 (433)
T ss_dssp ES
T ss_pred Ee
Confidence 64
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.14 E-value=2.6e-06 Score=86.43 Aligned_cols=108 Identities=23% Similarity=0.246 Sum_probs=78.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|+|.++..+... ..++++||+++.+++.|++.+.-. ..+++++.+|..++ .
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~----~------------ 97 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQ-GLKPRLACQDISNL----N------------ 97 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHT-TCCCEEECCCGGGC----C------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhc-CCCeEEEecccccC----C------------
Confidence 5679999999999998888877 358999999999999999987321 22789999987543 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
. ...||+|++..+. ...+ +..---..+|+.+++.|+|||.|++.+..
T Consensus 98 -----------------~-~~~fD~v~~~~~~---l~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 98 -----------------I-NRKFDLITCCLDS---TNYI---IDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp -----------------C-SCCEEEEEECTTG---GGGC---CSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred -----------------c-cCCceEEEEcCcc---cccc---CCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 0 1579999983211 0001 00001367999999999999999997753
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.13 E-value=6e-05 Score=74.66 Aligned_cols=116 Identities=19% Similarity=0.245 Sum_probs=81.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|.|.++..+... +..++++||+|+.+++.|++.+....- +++++.+|+.++ .
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~----~------------ 110 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF----N------------ 110 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC----C------------
T ss_pred CcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHc----C------------
Confidence 4579999999999999988877 334899999999999999998743111 799999997763 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHH
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 688 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v 688 (759)
..||+|++|.--... ..-....+++.+.+.| +|++++.+. .......+
T Consensus 111 --------------------~~~D~v~~~~p~~~~--------~~~~~~~~l~~~~~~l--~~~~~~~~~--~~~~~~~~ 158 (207)
T 1wy7_A 111 --------------------SRVDIVIMNPPFGSQ--------RKHADRPFLLKAFEIS--DVVYSIHLA--KPEVRRFI 158 (207)
T ss_dssp --------------------CCCSEEEECCCCSSS--------STTTTHHHHHHHHHHC--SEEEEEEEC--CHHHHHHH
T ss_pred --------------------CCCCEEEEcCCCccc--------cCCchHHHHHHHHHhc--CcEEEEEeC--CcCCHHHH
Confidence 369999996521110 1123468899999988 677765532 23333444
Q ss_pred HHHHHH
Q 004354 689 ISRMKM 694 (759)
Q Consensus 689 ~~~l~~ 694 (759)
...+.+
T Consensus 159 ~~~l~~ 164 (207)
T 1wy7_A 159 EKFSWE 164 (207)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444544
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.12 E-value=8.7e-06 Score=88.42 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=82.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+|+|.|.++..+.... |..+|+++|+||.+++.|++.+ |+ + +++++.+|+.++...
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~--~-~i~~~~~D~~~~~~~---------- 269 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL--S-WIRFLRADARHLPRF---------- 269 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC--T-TCEEEECCGGGGGGT----------
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC--C-ceEEEeCChhhCccc----------
Confidence 45689999999999999988877 7789999999999999999987 55 3 799999998875221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--ChHHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--VEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
...||+|+.|.--+... .+...+ +-..+++.+++.|+|||.+++-.
T Consensus 270 -----------------------~~~~D~Ii~npPyg~r~----~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 270 -----------------------FPEVDRILANPPHGLRL----GRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp -----------------------CCCCSEEEECCCSCC--------CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred -----------------------cCCCCEEEECCCCcCcc----CCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 24589999965221100 001111 12679999999999999998754
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=8.5e-06 Score=89.64 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=77.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHh----------hcCCCCCCCeEEEEccHHHHHHhhcc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED----------YFGFTQDKSLKVHITDGIKFVREMKS 597 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~----------~Fgl~~~~rl~v~i~Da~~~l~~~~~ 597 (759)
....+||.||+|+|.++..+....+..++++||+++.++++|++ .+|+. .++++++.+|..+.--...
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~-~~rVefi~GD~~~lp~~d~- 249 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK-HAEYTLERGDFLSEEWRER- 249 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC-CCEEEEEECCTTSHHHHHH-
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC-CCCeEEEECcccCCccccc-
Confidence 44578999999999999988887776579999999999999986 34652 3589999999876421110
Q ss_pred cCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 598 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
-..+|+|++- +. . . .+. -...|..+.+.|+|||.||+.
T Consensus 250 ------------------------------~~~aDVVf~N--n~-~---F---~pd--l~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 250 ------------------------------IANTSVIFVN--NF-A---F---GPE--VDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp ------------------------------HHTCSEEEEC--CT-T---C---CHH--HHHHHHHHHTTSCTTCEEEES
T ss_pred ------------------------------cCCccEEEEc--cc-c---c---Cch--HHHHHHHHHHcCCCCcEEEEe
Confidence 0358999982 11 0 0 111 245677888999999999875
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.10 E-value=6e-06 Score=85.68 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=56.2
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCe--EEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~--VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~ 129 (759)
.+...+.+.+.. .++.+|||||||+|.++. +. .+ .+ |+++|+++.+++.++++... .++++++++|+.+++
T Consensus 8 ~i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~-~~~v~~i~~D~~~~~ 80 (252)
T 1qyr_A 8 FVIDSIVSAINP---QKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFL-GPKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHCC---CTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTT-GGGEEEECSCGGGCC
T ss_pred HHHHHHHHhcCC---CCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhcc-CCceEEEECchhhCC
Confidence 445556666654 567899999999999999 65 44 45 99999999999998877632 357999999999876
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7e-05 Score=79.33 Aligned_cols=148 Identities=19% Similarity=0.234 Sum_probs=96.1
Q ss_pred CCCCeEEEEcccccHHHH----HHHHhCCCCcEEEEEcCHH-----------HHHHHHhhc-CCC--CCC--CeEEEEcc
Q 004354 528 GKSVKAVVIGLGAGLLPM----FLHECMPFVGIEAVELDLT-----------MLNLAEDYF-GFT--QDK--SLKVHITD 587 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~----~L~~~~p~~~i~~VEiDp~-----------v~~vA~~~F-gl~--~~~--rl~v~i~D 587 (759)
....+||.+|.|+|.... .+.+..|..+++.|.++.. .-++++..+ ..+ ++. .++++.+|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 556799999999995321 2334557666655544321 122222221 011 123 45788999
Q ss_pred HHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHcc
Q 004354 588 GIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDAL 667 (759)
Q Consensus 588 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L 667 (759)
+.+.+.+.. +.++|+|++|.|++.. .+++.+.++|+.+.+++
T Consensus 175 a~~~l~~l~-------------------------------~~~~Da~flDgFsP~k-------NPeLWs~e~f~~l~~~~ 216 (308)
T 3vyw_A 175 ARKRIKEVE-------------------------------NFKADAVFHDAFSPYK-------NPELWTLDFLSLIKERI 216 (308)
T ss_dssp HHHHGGGCC-------------------------------SCCEEEEEECCSCTTT-------SGGGGSHHHHHHHHTTE
T ss_pred HHHHHhhhc-------------------------------ccceeEEEeCCCCccc-------CcccCCHHHHHHHHHHh
Confidence 999988764 2479999999999853 67899999999999999
Q ss_pred CcCcEEEEEecCCChhHHHHHHHHHHHhcCceEEEeecCCccEEEEEecCCC
Q 004354 668 SEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSES 719 (759)
Q Consensus 668 ~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~~ 719 (759)
+|||+|+ ..+.....+ ..|+++==.|...+-...--++++|+....
T Consensus 217 ~pgg~la--TYtaag~VR----R~L~~aGF~V~k~~G~g~KReml~A~~~~~ 262 (308)
T 3vyw_A 217 DEKGYWV--SYSSSLSVR----KSLLTLGFKVGSSREIGRKRKGTVASLKAP 262 (308)
T ss_dssp EEEEEEE--ESCCCHHHH----HHHHHTTCEEEEEECC---CEEEEEESSSC
T ss_pred CCCcEEE--EEeCcHHHH----HHHHHCCCEEEecCCCCCCCceeEEecCCC
Confidence 9999998 455555433 345555434666664444557888876553
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.7e-06 Score=89.57 Aligned_cols=115 Identities=10% Similarity=0.190 Sum_probs=71.9
Q ss_pred CCCeEEEEcccccH-HHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-CCCCC-----CeEEEEccHHH--HHHhhcccC
Q 004354 529 KSVKAVVIGLGAGL-LPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDK-----SLKVHITDGIK--FVREMKSSS 599 (759)
Q Consensus 529 ~~~~vLviGlG~G~-l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-l~~~~-----rl~v~i~Da~~--~l~~~~~~~ 599 (759)
...+||.||+|+|. +..++.. +..+|++||+++.+++.|++... ..... +++++++|... +-.+...
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~-- 123 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE-- 123 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT--
T ss_pred CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhc--
Confidence 45799999999995 4444442 34589999999999999998862 11010 25677777521 0011110
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 600 ATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
...+.+||+|++-. .- . ....+.+. ..+|+.+.+.|+|||+|++....
T Consensus 124 -------------------------~~~~~~FD~V~~~~-~l---h-y~~~~~~~--~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 124 -------------------------VFYFGKFNIIDWQF-AI---H-YSFHPRHY--ATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp -------------------------TCCSSCEEEEEEES-CG---G-GTCSTTTH--HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -------------------------cccCCCeeEEEECc-hH---H-HhCCHHHH--HHHHHHHHHHcCCCCEEEEEeCC
Confidence 00135799998621 10 0 00112222 68999999999999999987754
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.8e-06 Score=86.05 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=89.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-----CCCcEEEEEcCH--------------------------HHHHHHHhhc---
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-----PFVGIEAVELDL--------------------------TMLNLAEDYF--- 573 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-----p~~~i~~VEiDp--------------------------~v~~vA~~~F--- 573 (759)
..+.+||.+|...|..+.+++..+ +..+|.++|..+ ..++.|+++|
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 567899999999998777777654 366899999642 1467788887
Q ss_pred CCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCC
Q 004354 574 GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD 653 (759)
Q Consensus 574 gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~ 653 (759)
|+. +++++++.||+.+.+.+.. ..+||+|++|++.-.+
T Consensus 185 gl~-~~~I~li~Gda~etL~~~~-------------------------------~~~~d~vfIDaD~y~~---------- 222 (282)
T 2wk1_A 185 DLL-DEQVRFLPGWFKDTLPTAP-------------------------------IDTLAVLRMDGDLYES---------- 222 (282)
T ss_dssp TCC-STTEEEEESCHHHHSTTCC-------------------------------CCCEEEEEECCCSHHH----------
T ss_pred CCC-cCceEEEEeCHHHHHhhCC-------------------------------CCCEEEEEEcCCcccc----------
Confidence 552 4789999999998876542 3579999999864211
Q ss_pred CChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHHHHHHHhcC
Q 004354 654 FVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFN 697 (759)
Q Consensus 654 f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~ 697 (759)
+..+|+.+..+|+|||++++.=+...+...+ .+..+.+...
T Consensus 223 --~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~-Av~Ef~~~~~ 263 (282)
T 2wk1_A 223 --TWDTLTNLYPKVSVGGYVIVDDYMMCPPCKD-AVDEYRAKFD 263 (282)
T ss_dssp --HHHHHHHHGGGEEEEEEEEESSCTTCHHHHH-HHHHHHHHTT
T ss_pred --HHHHHHHHHhhcCCCEEEEEcCCCCCHHHHH-HHHHHHHhcC
Confidence 3679999999999999999833332233333 3444444443
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3.4e-05 Score=85.37 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=72.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|.|.+...|... ..++++||+++.+++.|++. ++. .....+..+..+.+...
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~--~~~~~~~~~~~~~l~~~------------ 168 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIR--VRTDFFEKATADDVRRT------------ 168 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCC--EECSCCSHHHHHHHHHH------------
T ss_pred CCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCC--cceeeechhhHhhcccC------------
Confidence 45579999999999998888876 34999999999999999987 442 11122222333332221
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
+.+||+|+.- .....+ + --..+|+.+++.|+|||+|++...
T Consensus 169 --------------------~~~fD~I~~~----~vl~h~---~---d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 169 --------------------EGPANVIYAA----NTLCHI---P---YVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp --------------------HCCEEEEEEE----SCGGGC---T---THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --------------------CCCEEEEEEC----ChHHhc---C---CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2679999982 111111 1 137899999999999999998753
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.8e-06 Score=88.01 Aligned_cols=98 Identities=15% Similarity=0.073 Sum_probs=73.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+.+||.||+|+|.++..+.. +..+|++||++|.+++.|++.. +++++++|+.++ .
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~----~----------- 89 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENL----A----------- 89 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSC----C-----------
T ss_pred CCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhC----C-----------
Confidence 4568999999999999998887 5679999999999999987765 789999997442 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+..||+|+.-. ....+. --..+|+.+.+.|+ ||.+++-.
T Consensus 90 ------------------~~~~~fD~v~~~~----~l~~~~------~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 90 ------------------LPDKSVDGVISIL----AIHHFS------HLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp ------------------SCTTCBSEEEEES----CGGGCS------SHHHHHHHHHHHBC-SSCEEEEE
T ss_pred ------------------CCCCCEeEEEEcc----hHhhcc------CHHHHHHHHHHHhC-CcEEEEEE
Confidence 1136799999821 111110 12689999999999 99555443
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.2e-06 Score=84.81 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=73.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
+.+.+||.||+|.|.++..+....|..+++++|+|+.++++|++++... ...++++ .|...- ..
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~---~~---------- 112 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD---VY---------- 112 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH---HT----------
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc---CC----------
Confidence 5678999999999999999999989999999999999999999998321 1224555 565442 11
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChH--HHHHHHHHccCcCcEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG--SFLLTVKDALSEQGLFI 674 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~--~fl~~~~~~L~~~Gilv 674 (759)
...||+|+. .+- -++++. ..+..+.+.|+|+|+||
T Consensus 113 ---------------------~~~~DvVLa--~k~----------LHlL~~~~~al~~v~~~L~pggvfI 149 (200)
T 3fzg_A 113 ---------------------KGTYDVVFL--LKM----------LPVLKQQDVNILDFLQLFHTQNFVI 149 (200)
T ss_dssp ---------------------TSEEEEEEE--ETC----------HHHHHHTTCCHHHHHHTCEEEEEEE
T ss_pred ---------------------CCCcChhhH--hhH----------HHhhhhhHHHHHHHHHHhCCCCEEE
Confidence 367999997 221 122211 24558999999999876
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=3.4e-06 Score=92.55 Aligned_cols=100 Identities=16% Similarity=0.219 Sum_probs=73.8
Q ss_pred CCCCeEEEEccc-------ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHH--HHHhhccc
Q 004354 528 GKSVKAVVIGLG-------AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK--FVREMKSS 598 (759)
Q Consensus 528 ~~~~~vLviGlG-------~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~--~l~~~~~~ 598 (759)
..+.+||.||+| +|....++...+|..+|++||++|.+. + ..++++++++|+.+ |......
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~---~~~rI~fv~GDa~dlpf~~~l~~- 284 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V---DELRIRTIQGDQNDAEFLDRIAR- 284 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G---CBTTEEEEECCTTCHHHHHHHHH-
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h---cCCCcEEEEecccccchhhhhhc-
Confidence 356899999999 666666777778999999999999972 1 35789999999865 4433220
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 599 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
....||+||.|..- . .. -...+|+.+.+.|+|||+|++.
T Consensus 285 ----------------------------~d~sFDlVisdgsH--~-------~~--d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 285 ----------------------------RYGPFDIVIDDGSH--I-------NA--HVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp ----------------------------HHCCEEEEEECSCC--C-------HH--HHHHHHHHHGGGEEEEEEEEEE
T ss_pred ----------------------------ccCCccEEEECCcc--c-------ch--hHHHHHHHHHHhcCCCeEEEEE
Confidence 01579999985311 0 01 1257899999999999999985
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.07 E-value=6.4e-06 Score=85.46 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=78.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHH------HHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccC
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLT------MLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSS 599 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~------v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~ 599 (759)
....+||.||+|.|.++..+...+ |..++++||+++. +++.|++.+.- ...++++++.+| ++.....
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~--- 116 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT--NLSDDLG--- 116 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC--CTTTCCG---
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC--hhhhccC---
Confidence 455799999999999999888885 6679999999997 99999998732 123689999998 2211110
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 600 ATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
......||+|++.- ....+ +. ...+++.++.+++|||.+++.-+.
T Consensus 117 -------------------------~~~~~~fD~v~~~~----~l~~~--~~----~~~~~~~~~~l~~~gG~l~~~~~~ 161 (275)
T 3bkx_A 117 -------------------------PIADQHFDRVVLAH----SLWYF--AS----ANALALLFKNMAAVCDHVDVAEWS 161 (275)
T ss_dssp -------------------------GGTTCCCSEEEEES----CGGGS--SC----HHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred -------------------------CCCCCCEEEEEEcc----chhhC--CC----HHHHHHHHHHHhCCCCEEEEEEec
Confidence 00136799999731 11111 11 134777778888889999886544
Q ss_pred C
Q 004354 680 R 680 (759)
Q Consensus 680 ~ 680 (759)
.
T Consensus 162 ~ 162 (275)
T 3bkx_A 162 M 162 (275)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.07 E-value=4.9e-05 Score=75.03 Aligned_cols=95 Identities=13% Similarity=0.185 Sum_probs=70.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.+|.|.|.++..+... +..++++||++|.+++.|++.+. +++++.+|+.++ .
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~----~------------ 108 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEI----S------------ 108 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGC----C------------
T ss_pred CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHC----C------------
Confidence 4579999999999999988877 55579999999999999999875 689999997663 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
..||+|++|..-.. . ..-....+++.+.+.| |+++++
T Consensus 109 --------------------~~~D~v~~~~p~~~----~----~~~~~~~~l~~~~~~~--g~~~~~ 145 (200)
T 1ne2_A 109 --------------------GKYDTWIMNPPFGS----V----VKHSDRAFIDKAFETS--MWIYSI 145 (200)
T ss_dssp --------------------CCEEEEEECCCC---------------CHHHHHHHHHHE--EEEEEE
T ss_pred --------------------CCeeEEEECCCchh----c----cCchhHHHHHHHHHhc--CcEEEE
Confidence 46999999532110 0 0112367899999988 454443
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.3e-05 Score=82.90 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=75.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|+|.++..|... ..++++||+++.+++.|++... . .++.+|+.+. .
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~---~---~~~~~d~~~~----~------------ 109 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV---K---NVVEAKAEDL----P------------ 109 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC---S---CEEECCTTSC----C------------
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC---C---CEEECcHHHC----C------------
Confidence 5579999999999999888876 3589999999999999999864 1 2777775432 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
..+..||+|++.-.- ... +.. -..+|+.+++.|+|||.|++.....
T Consensus 110 -----------------~~~~~fD~v~~~~~~------~~~-~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 110 -----------------FPSGAFEAVLALGDV------LSY-VEN--KDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp -----------------SCTTCEEEEEECSSH------HHH-CSC--HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred -----------------CCCCCEEEEEEcchh------hhc-ccc--HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 113679999972100 000 111 4789999999999999999887654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3e-06 Score=90.22 Aligned_cols=117 Identities=13% Similarity=0.065 Sum_probs=79.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-------CCCCeEEEEccHHHHHHhhcccCcc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-------QDKSLKVHITDGIKFVREMKSSSAT 601 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-------~~~rl~v~i~Da~~~l~~~~~~~~~ 601 (759)
.+.+||.||+|+|.+...+... +..++++||+++.+++.|++.+.-. ...+++++.+|+.+..-...
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~----- 107 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDK----- 107 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTT-----
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhh-----
Confidence 5679999999999888877774 5679999999999999999886310 13478999999765310000
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-ChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 602 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
+ ......||+|++-. ....+ ..+. --..+|..+++.|+|||+|++.....
T Consensus 108 -----~-----------------~~~~~~fD~V~~~~----~l~~~---~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 108 -----F-----------------RDPQMCFDICSCQF----VCHYS---FESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp -----C-----------------SSTTCCEEEEEEET----CGGGG---GGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred -----c-----------------ccCCCCEEEEEEec----chhhc---cCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 0 00124799999821 10000 0000 11489999999999999999987643
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.06 E-value=4e-06 Score=95.06 Aligned_cols=100 Identities=22% Similarity=0.218 Sum_probs=75.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.||.|.|.+++++... +..+|++||+++ +++.|++.+ |+ .++++++.+|..++ ..
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~gl--~~~v~~~~~d~~~~--~~---------- 221 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNL--TDRIVVIPGKVEEV--SL---------- 221 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTTC--TTTEEEEESCTTTC--CC----------
T ss_pred CCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcCC--CCcEEEEECchhhC--cc----------
Confidence 4579999999999999999874 667999999999 899999876 54 46899999997653 11
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC---hHHHHHHHHHccCcCcEEEEEe
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~---~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+||+|+.+.-. ..+. -.+.+..+++.|+|||++++..
T Consensus 222 ----------------------~~~fD~Ivs~~~~-----------~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 222 ----------------------PEQVDIIISEPMG-----------YMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp ----------------------SSCEEEEECCCCH-----------HHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred ----------------------CCCeEEEEEeCch-----------HhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2479999983210 0111 1456677889999999998543
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=3.5e-06 Score=85.78 Aligned_cols=110 Identities=10% Similarity=-0.075 Sum_probs=75.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcC-HHHHHHH---HhhcCCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELD-LTMLNLA---EDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD-p~v~~vA---~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.||+|+|.++..|....|..+|++||++ +.|+++| ++...-..-++++++.+|+.++ ...
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~--------- 93 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFE--------- 93 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGG---------
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhh---------
Confidence 4568999999999999999887788899999999 8888887 6654211124699999997665 110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
....+|.|.+...-+.. . .........+|+.+++.|+|||.|++
T Consensus 94 ----------------------~~d~v~~i~~~~~~~~~---~--~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 94 ----------------------LKNIADSISILFPWGTL---L--EYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp ----------------------GTTCEEEEEEESCCHHH---H--HHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred ----------------------ccCeEEEEEEeCCCcHH---h--hhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 01457777663210000 0 00001135789999999999999998
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-05 Score=80.30 Aligned_cols=60 Identities=20% Similarity=0.140 Sum_probs=51.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIK 590 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~ 590 (759)
...+||.||.|+|.+...|....|..+|++||+++.+++.|++.+ ++ .++++++.+|+.+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~ 127 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL--SDLIKVVKVPQKT 127 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC--CccEEEEEcchhh
Confidence 457999999999988887877767789999999999999999986 44 4579999999765
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.2e-05 Score=81.24 Aligned_cols=108 Identities=20% Similarity=0.223 Sum_probs=74.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEc-CHHHHHHHHhhc-----CCCC-C----CCeEEEEcc---HHHHH-H
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVEL-DLTMLNLAEDYF-----GFTQ-D----KSLKVHITD---GIKFV-R 593 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEi-Dp~v~~vA~~~F-----gl~~-~----~rl~v~i~D---a~~~l-~ 593 (759)
...+||.||.|+|.++..+... +..+|++||+ ++.+++.|++.. .... + ++++++..| ...-+ .
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 4569999999999999888876 3448999999 999999999887 2110 1 468887443 22222 1
Q ss_pred hhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEE-cCCCCCCCCCCCcCCCCCChHHHHHHHHHccC---c
Q 004354 594 EMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALS---E 669 (759)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~-D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~---~ 669 (759)
... ..+||+|+. |+.-.. + .-..+++.+++.|+ |
T Consensus 158 ~~~-------------------------------~~~fD~Ii~~dvl~~~---------~--~~~~ll~~l~~~Lk~~~p 195 (281)
T 3bzb_A 158 CTG-------------------------------LQRFQVVLLADLLSFH---------Q--AHDALLRSVKMLLALPAN 195 (281)
T ss_dssp HHS-------------------------------CSSBSEEEEESCCSCG---------G--GHHHHHHHHHHHBCCTTT
T ss_pred hcc-------------------------------CCCCCEEEEeCcccCh---------H--HHHHHHHHHHHHhcccCC
Confidence 111 257999987 542210 0 13679999999999 9
Q ss_pred --CcEEEEEecC
Q 004354 670 --QGLFIVNLVS 679 (759)
Q Consensus 670 --~Gilv~N~~~ 679 (759)
||.+++-+..
T Consensus 196 ~~gG~l~v~~~~ 207 (281)
T 3bzb_A 196 DPTAVALVTFTH 207 (281)
T ss_dssp CTTCEEEEEECC
T ss_pred CCCCEEEEEEEe
Confidence 9987765544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 759 | ||||
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 2e-06 | |
| d2b2ca1 | 312 | c.66.1.17 (A:3-314) Spermidine synthase {Caenorhab | 2e-05 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 2e-05 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 5e-05 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 4e-04 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 4e-04 | |
| d2o07a1 | 285 | c.66.1.17 (A:16-300) Spermidine synthase {Human (H | 5e-04 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 0.001 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 0.001 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 0.002 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 0.003 |
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.4 bits (114), Expect = 2e-06
Identities = 35/226 (15%), Positives = 63/226 (27%), Gaps = 38/226 (16%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
D + W + IGD+ AE+ + L+ L+ ++L CG S
Sbjct: 23 DGEAARVWQLY-----IGDTRSRTAEY---KAWLLGLLRQH---GCHRVLDVACGTGVDS 71
Query: 84 EHLYDAGFHGI--------------------TNVDFSKVVISDMLRRNVRDRSDMRWRVM 123
L + GF F K VI + +
Sbjct: 72 IMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 131
Query: 124 DMTSMQGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFG 183
+ + L + + L + +++ GG V ++L G
Sbjct: 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYIL-------STG 184
Query: 184 WKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLD 229
I KS + T ++ + + V L T + D
Sbjct: 185 CAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRD 230
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Score = 45.1 bits (106), Expect = 2e-05
Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 532 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ----DKSLKVHITD 587
+ ++IG G G + + + + E+D ++++A+ + L + D
Sbjct: 109 RVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGD 168
Query: 588 GIKFVREMKSS 598
G +F++ K+
Sbjct: 169 GFEFLKNHKNE 179
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 2e-05
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 6/98 (6%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL 86
+ E W + F L+ L + + ++ P CG + +
Sbjct: 9 TLEEWQDKWVNGKTA--FHQEQGHQLLKKHLDTFLKGK---SGLRVFFPLCGKAVEMKWF 63
Query: 87 YDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124
D G + V+ S++ I + S+ +
Sbjct: 64 ADRGHS-VVGVEISELGIQEFFTEQNLSYSEEPITEIP 100
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 43.2 bits (100), Expect = 5e-05
Identities = 21/158 (13%), Positives = 49/158 (31%), Gaps = 4/158 (2%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL 86
S E +D+ + + +L + P ++L G G + S L
Sbjct: 5 SWEFYDRIARAYDSMYETPKWKLYHRLIGSFL----EEYLKNPCRVLDLGGGTGKWSLFL 60
Query: 87 YDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHKLGN 146
+ GF + +++ + + + + AL + + +
Sbjct: 61 QERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKD 120
Query: 147 QYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 184
+ SE++R+L G + L + K +
Sbjct: 121 KAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQ 158
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 40.7 bits (94), Expect = 4e-04
Identities = 24/189 (12%), Positives = 50/189 (26%), Gaps = 34/189 (17%)
Query: 10 SSSSSATDLLQTLGDFTSK------ENWDKFFTIRGIGDSFEWYAE-------------- 49
S +S+ +L + D K E W T WY +
Sbjct: 7 SKEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLYDPEKGWYGKALEYWRTVPATVSG 66
Query: 50 ----WPQLRDPLIS----LIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101
+ D I I + + L G G R++++L + ++ K
Sbjct: 67 VLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVK 126
Query: 102 VVISDMLRRNVRDR------SDMRWRVMDMTSMQGGLDALMEPELGHKLGNQYLSEVKRL 155
++ + R + M + + + L ++ ++
Sbjct: 127 HMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQA 186
Query: 156 LKSGGKFVC 164
L G
Sbjct: 187 LTPNGYIFF 195
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 40.3 bits (93), Expect = 4e-04
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK----VVISDMLRRNVRDRSDMRWRV 122
++L G G + VD +K V S + V + +
Sbjct: 15 RAEHRVLDIGAGAGHTALAFSPYVQE-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTA 73
Query: 123 MDMTSMQGGLDALMEPELGHKLGN--QYLSEVKRLLKSGGKFVCL 165
+ D + H + + + EV R+LK G+F+ +
Sbjct: 74 ESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV 118
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 5e-04
Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 42/152 (27%)
Query: 532 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFTQDKSLKVHITD 587
K ++IG G G + + + + E+D ++ +++ + L +H+ D
Sbjct: 81 KVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGD 140
Query: 588 GIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 647
G +F+++ + + D++I D P
Sbjct: 141 GFEFMKQNQDA--------------------------------FDVIITDSSDPMG---- 164
Query: 648 TCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679
PA + S+ +K AL E G+
Sbjct: 165 --PAESLFKESYYQLMKTALKEDGVLCCQGEC 194
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 38.5 bits (88), Expect = 0.001
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 22/117 (18%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN------VRDRSDMRWR 121
P ++LVP CG S+ L G+H + + S+ + +
Sbjct: 20 PGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYA 78
Query: 122 VMDMTSMQGGLDALMEPELGHKLG---------------NQYLSEVKRLLKSGGKFV 163
+ G AL ++GH +Y+ ++ L+ +
Sbjct: 79 APGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL 135
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 38.8 bits (89), Expect = 0.001
Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 7/126 (5%)
Query: 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKV 102
F + LRD +++ + +L GCG + DA +D SKV
Sbjct: 60 FLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKV 119
Query: 103 VISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 162
I + + + +DA++ E+ R++K GG
Sbjct: 120 AIKAA-AKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC-----KAEELARVVKPGGWV 173
Query: 163 VCLTLA 168
+ T
Sbjct: 174 ITATPG 179
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 37.6 bits (86), Expect = 0.002
Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 7/147 (4%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
++ E L ++ A P + L GCGN R S +L G+ +
Sbjct: 7 NYFTEKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMA 66
Query: 105 SDMLRRNVRDRSDMRWRVMD------MTSMQGGLDALMEPELGHKLGNQYLSEVKRLLKS 158
+ + +++ ++D L ++ L + ++ ++R K
Sbjct: 67 NLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKP 126
Query: 159 GGKFVCLTLAESHVLGLLFPKFRFGWK 185
GG + + ++ F F +K
Sbjct: 127 GGYNLIVAAMDTPDFPCTVG-FPFAFK 152
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.003
Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 3/102 (2%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
F ++ +++ G ++ + L P ++ G G +
Sbjct: 10 HFLPRDYLATYYSFDGSPSPEAEMLKF--NLECLHKTF-GPGGLQGDTLIDIGSGPTIYQ 66
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125
F IT DF+ ++ + ++ W
Sbjct: 67 VLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVK 108
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 759 | |||
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 99.93 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.93 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 99.92 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.92 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 99.92 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.92 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 99.92 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.73 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.66 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.66 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.62 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.61 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.61 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.6 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.59 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.56 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.56 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.55 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.54 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.53 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.52 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.5 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.49 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.49 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.46 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.45 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.45 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.43 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.42 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.42 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.41 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.4 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.4 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.39 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.39 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.35 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.34 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.34 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.32 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.27 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.21 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.21 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.18 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.17 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.17 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.14 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.13 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.12 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.11 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.1 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.1 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.08 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.07 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.06 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.04 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.04 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.01 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.01 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.0 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.97 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.97 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.95 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.95 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.94 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.92 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.91 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.89 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.88 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.88 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.87 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.87 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.85 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.83 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 98.82 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.81 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.81 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.79 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.78 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.78 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.75 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.73 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.73 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.72 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.71 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.69 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.67 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.66 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.65 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.63 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 98.63 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.62 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.62 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.61 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.61 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.6 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.6 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.6 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.6 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.55 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.55 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 98.54 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.54 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.52 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.52 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.51 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.5 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.5 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.49 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.47 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.47 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.45 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.45 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.44 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.44 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.44 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.43 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.42 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.41 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.39 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.38 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.37 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.37 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.35 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.33 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.33 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.31 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.31 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.31 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.3 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.29 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.29 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.27 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.25 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.24 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.24 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.23 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.23 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.22 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.21 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.21 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.2 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.2 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.19 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.15 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.14 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.11 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.1 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.08 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.04 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.03 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.01 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.01 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.99 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.91 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.9 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.89 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.87 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.85 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.81 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.75 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 97.75 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.72 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.63 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 97.63 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.6 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.59 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.57 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.55 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.52 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.48 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.48 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.48 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.41 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.34 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.29 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.27 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.22 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.16 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 97.1 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.09 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.07 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.07 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.99 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 96.97 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.91 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.89 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.89 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.76 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 96.75 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.74 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 96.65 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.46 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.46 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.44 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.38 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.27 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.19 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.17 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.12 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.12 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.08 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.89 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 95.89 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.86 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.77 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.76 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.71 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 95.68 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 95.52 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.49 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.38 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.37 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.37 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.34 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.34 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.17 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.04 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.97 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.82 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.67 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.65 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 94.61 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 94.4 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.27 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.23 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.19 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.09 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.07 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.02 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.21 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.89 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 92.79 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.62 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 92.55 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.31 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 92.18 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.87 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.74 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.71 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 91.61 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 91.55 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.52 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 91.34 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 91.2 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 91.06 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.03 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 90.93 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 90.65 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.34 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.23 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 89.83 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 89.66 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 89.64 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 89.63 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 89.26 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 89.2 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.18 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 89.06 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 88.86 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 88.62 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 88.19 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 87.71 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 87.61 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 87.6 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 87.57 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 87.56 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 86.46 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 86.21 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 86.19 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 86.13 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 86.11 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 86.04 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 85.78 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 85.77 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 85.39 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 85.32 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 85.23 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 85.23 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 84.95 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 84.89 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 84.65 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 84.3 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 84.2 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 84.18 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 84.03 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 83.92 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 83.84 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 83.82 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 83.76 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 83.75 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 83.62 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 83.18 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 82.95 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 82.5 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 82.41 | |
| d2b4aa1 | 118 | Hypothetical protein BH3024 {Bacillus halodurans [ | 81.93 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 81.89 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 81.68 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 81.65 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 80.82 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 80.81 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 80.8 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 80.51 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 80.45 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 80.44 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 80.3 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 80.21 |
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.9e-25 Score=230.30 Aligned_cols=169 Identities=18% Similarity=0.270 Sum_probs=132.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc----CCCCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFTQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F----gl~~~~ 579 (759)
..||. |+++++++.+ +.|++|||||+|+|++++.+.++.+..+|++|||||.|+++|++|| +..+++
T Consensus 62 ~~Yhe-~l~h~~l~~~--------~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~ 132 (285)
T d2o07a1 62 FSYQE-MIANLPLCSH--------PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSS 132 (285)
T ss_dssp HHHHH-HHHHHHHTTS--------SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCT
T ss_pred HHHHH-HhccHhhhhC--------cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCC
Confidence 56876 5556666655 7889999999999999999999887889999999999999999999 334689
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++||++||++.. .+||+||+|++++.. |+..+++.+|
T Consensus 133 rv~i~~~Da~~~l~~~~--------------------------------~~yDvIi~D~~~p~~------~~~~L~t~eF 174 (285)
T d2o07a1 133 KLTLHVGDGFEFMKQNQ--------------------------------DAFDVIITDSSDPMG------PAESLFKESY 174 (285)
T ss_dssp TEEEEESCHHHHHHTCS--------------------------------SCEEEEEEECC-----------------CHH
T ss_pred CceEEEccHHHHHhcCC--------------------------------CCCCEEEEcCCCCCC------cccccccHHH
Confidence 99999999999998743 689999999977642 5789999999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEe--ecC---CccEEEEEecCCC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE---DVNLVLFGLSSES 719 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~---~~N~Vl~a~~~~~ 719 (759)
++.|+++|+|+|++++|..+. .......+.++++++|+++..+. ++. +....++|++.+.
T Consensus 175 ~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~~~~g~w~f~~aSk~p~ 241 (285)
T d2o07a1 175 YQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNPS 241 (285)
T ss_dssp HHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESSTT
T ss_pred HHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCeeeEEeeeeeecCCCCeEEEEEECCcc
Confidence 999999999999999998654 45566788999999999976554 332 2345788998763
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.93 E-value=2.5e-24 Score=225.01 Aligned_cols=171 Identities=22% Similarity=0.335 Sum_probs=135.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-------
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 576 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~------- 576 (759)
..||.+|+. +++..+ +++++||+||+|+|+++..+.++ +..+|++|||||.|+++|++||++.
T Consensus 56 ~~Yhe~l~~-~~l~~~--------~~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~ 125 (276)
T d1mjfa_ 56 RSYHEPLVH-PAMLAH--------PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAM 125 (276)
T ss_dssp HHHHHHHHH-HHHHHS--------SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHH
T ss_pred hHHHHHhhc-chhhcC--------CCCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhh
Confidence 569987764 344443 78899999999999998888776 5569999999999999999999764
Q ss_pred ---CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCC
Q 004354 577 ---QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD 653 (759)
Q Consensus 577 ---~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~ 653 (759)
.++|++++++||++|+++. ++||+||+|++++.. |+..
T Consensus 126 ~~~~d~rv~i~~~Da~~~l~~~---------------------------------~~yDvIi~D~~~~~~------~~~~ 166 (276)
T d1mjfa_ 126 LNGKHEKAKLTIGDGFEFIKNN---------------------------------RGFDVIIADSTDPVG------PAKV 166 (276)
T ss_dssp HTTCCSSEEEEESCHHHHHHHC---------------------------------CCEEEEEEECCCCC-----------
T ss_pred hccCCCCceEEEChHHHHHhcc---------------------------------CCCCEEEEeCCCCCC------Cccc
Confidence 4799999999999999752 579999999987532 5788
Q ss_pred CChHHHHHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEee--c--CCccEEEEEecCCCCCCC
Q 004354 654 FVEGSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSSESCIKD 723 (759)
Q Consensus 654 f~~~~fl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~Vl~a~~~~~~~~~ 723 (759)
|++.+|++.|+++|+|+|++++|..+. .......++++|+++|++|+.+.+ + .+.+..++|++.+.....
T Consensus 167 L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~y~~~w~f~~as~~~~~~~~ 242 (276)
T d1mjfa_ 167 LFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVKGDIDFTK 242 (276)
T ss_dssp TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEEESSCCTTC
T ss_pred ccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhCCeeEEEEecCcCCCCceEEEEEeCCCCChhh
Confidence 999999999999999999999998554 345566788999999999887764 2 234567888877654433
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.92 E-value=3.3e-24 Score=225.20 Aligned_cols=169 Identities=21% Similarity=0.345 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl----~~~~ 579 (759)
..||. |++++++..+ ++|++||+||+|+|++++.+.++.|..+|++|||||+|+++|++||.. .+++
T Consensus 64 ~~Yhe-~l~h~~~~~~--------~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~ 134 (290)
T d1xj5a_ 64 CAYQE-MITHLPLCSI--------PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDP 134 (290)
T ss_dssp HHHHH-HHHHHHHTTS--------SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGST
T ss_pred hHHHH-HHhhHHHhhC--------CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCC
Confidence 55875 4555565554 788999999999999999999987777999999999999999999932 3689
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++||++|+++.. ..+||+||+|++++. + |+..|++.+|
T Consensus 135 r~~i~~~Da~~~l~~~~-------------------------------~~~yDvIi~D~~dp~---~---~~~~L~t~eF 177 (290)
T d1xj5a_ 135 RVNLVIGDGVAFLKNAA-------------------------------EGSYDAVIVDSSDPI---G---PAKELFEKPF 177 (290)
T ss_dssp TEEEEESCHHHHHHTSC-------------------------------TTCEEEEEECCCCTT---S---GGGGGGSHHH
T ss_pred CcEEEEccHHHHHhhcc-------------------------------ccCccEEEEcCCCCC---C---cchhhCCHHH
Confidence 99999999999998754 358999999998753 1 5789999999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEE---eecC---CccEEEEEecCC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCL---QLEE---DVNLVLFGLSSE 718 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~---~~~~---~~N~Vl~a~~~~ 718 (759)
++.|+++|+|+|++++|+.+. +......++++++++|+++..+ .++. +....++|++..
T Consensus 178 ~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~as~~~ 244 (290)
T d1xj5a_ 178 FQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTEG 244 (290)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECSS
T ss_pred HHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEEEeCCC
Confidence 999999999999999998664 4556678899999999986433 2443 234467777654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=3.3e-24 Score=227.58 Aligned_cols=187 Identities=16% Similarity=0.189 Sum_probs=146.4
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQD 578 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----gl~~~ 578 (759)
..||.+|+ +++++.+ +++++||+||+|+|++++.+.++.|..+|++|||||+|+++|++|| +..++
T Consensus 61 ~~Yhe~l~-h~~l~~~--------~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d 131 (312)
T d1uira_ 61 YIYHETLV-HPAMLTH--------PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDD 131 (312)
T ss_dssp HHHHHHHH-HHHHHHS--------SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGC
T ss_pred HHHHHHHh-hhhhhhC--------CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCC
Confidence 56887666 4555555 7889999999999999999998888889999999999999999999 33468
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHH
Q 004354 579 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 658 (759)
Q Consensus 579 ~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~ 658 (759)
+|++++++||++||++.. .+||+||+|+..+- +...|+..|++.+
T Consensus 132 ~rv~i~~~Da~~~l~~~~--------------------------------~~yDvIi~D~~dp~---~~~~~~~~L~t~e 176 (312)
T d1uira_ 132 PRAVLVIDDARAYLERTE--------------------------------ERYDVVIIDLTDPV---GEDNPARLLYTVE 176 (312)
T ss_dssp TTEEEEESCHHHHHHHCC--------------------------------CCEEEEEEECCCCB---STTCGGGGGSSHH
T ss_pred CceEEEEchHHHHhhhcC--------------------------------CcccEEEEeCCCcc---cccchhhhhhhHH
Confidence 999999999999998753 67999999986542 2233678899999
Q ss_pred HHHHHHHccCcCcEEEEEecCC---ChhHHHHHHHHHHHhcCceEEEee--cC--CccEEEEEecCC--CCCCCCcHHHH
Q 004354 659 FLLTVKDALSEQGLFIVNLVSR---SQATKDMVISRMKMVFNHLFCLQL--EE--DVNLVLFGLSSE--SCIKDNSFPEA 729 (759)
Q Consensus 659 fl~~~~~~L~~~Gilv~N~~~~---~~~~~~~v~~~l~~vF~~v~~~~~--~~--~~N~Vl~a~~~~--~~~~~~~l~~~ 729 (759)
|++.|+++|+|||+|++|..+. .......+.++++++|++|..+.. +. .....++|++.. ..+....+..+
T Consensus 177 F~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~w~f~~aS~~~~p~~~~~~~~~~~ 256 (312)
T d1uira_ 177 FYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEAR 256 (312)
T ss_dssp HHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEEESSSCTTCCCTTHHHHH
T ss_pred HHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCCCEeEEEeCCCCccccChhhhhhh
Confidence 9999999999999999998543 345667777999999999877653 32 234578888874 33445556666
Q ss_pred HHHHh
Q 004354 730 AVQLG 734 (759)
Q Consensus 730 a~~l~ 734 (759)
.++..
T Consensus 257 ~~~~~ 261 (312)
T d1uira_ 257 IRERN 261 (312)
T ss_dssp HHHTT
T ss_pred HhhcC
Confidence 66543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=6.2e-24 Score=221.51 Aligned_cols=170 Identities=17% Similarity=0.302 Sum_probs=140.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc----CCCCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFTQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F----gl~~~~ 579 (759)
..||. |+.++++..+ +.+++||+||+|+|+++..+.++.+..+|++|||||+|+++|++|| +..+++
T Consensus 59 ~~Yhe-~l~h~~l~~~--------~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~ 129 (274)
T d1iy9a_ 59 FVYHE-MVAHVPLFTH--------PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDP 129 (274)
T ss_dssp HHHHH-HHHHHHHHHS--------SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTST
T ss_pred hhchh-hhccchhhcc--------CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCC
Confidence 55777 5556666655 6889999999999999999999877789999999999999999999 445789
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++||++||++.. .+||+||+|+.++.. |+..|++.+|
T Consensus 130 r~~i~~~D~~~~l~~~~--------------------------------~~yDvIi~D~~~p~~------~~~~L~t~eF 171 (274)
T d1iy9a_ 130 RVDVQVDDGFMHIAKSE--------------------------------NQYDVIMVDSTEPVG------PAVNLFTKGF 171 (274)
T ss_dssp TEEEEESCSHHHHHTCC--------------------------------SCEEEEEESCSSCCS------CCCCCSTTHH
T ss_pred CeEEEechHHHHHhhcC--------------------------------CCCCEEEEcCCCCCC------cchhhccHHH
Confidence 99999999999998753 679999999876542 4678999999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEe--ec---CCccEEEEEecCCCC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LE---EDVNLVLFGLSSESC 720 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~---~~~N~Vl~a~~~~~~ 720 (759)
++.|+++|+|+|++++|..+. .......+.++|+++|+++..+. ++ .+....++|++....
T Consensus 172 y~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f~~aS~~~~p 239 (274)
T d1iy9a_ 172 YAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKYDP 239 (274)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESSCCT
T ss_pred HHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEEEEEcCCCCc
Confidence 999999999999999998654 45566788999999999976665 33 234567778876533
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=5.1e-24 Score=223.68 Aligned_cols=188 Identities=21% Similarity=0.275 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl----~~~~ 579 (759)
+.||. |+++++++.+ ++|++|||||+|+|++++.+.++.|..+|++|||||.|+++|++||.. -+++
T Consensus 73 ~~YhE-~l~h~pl~~~--------~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~ 143 (295)
T d1inla_ 73 FMYHE-MLAHVPMFLH--------PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDP 143 (295)
T ss_dssp HHHHH-HHHHHHHHHS--------SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCT
T ss_pred hhhhh-hhcchhHhhC--------CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCC
Confidence 56887 5666676665 789999999999999999999988888999999999999999999943 2589
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++||++||++.. .+||+||+|+.++.. .|+..|++.+|
T Consensus 144 rv~v~~~Da~~~l~~~~--------------------------------~~yDvIi~D~~dp~~-----~~~~~L~t~ef 186 (295)
T d1inla_ 144 RAEIVIANGAEYVRKFK--------------------------------NEFDVIIIDSTDPTA-----GQGGHLFTEEF 186 (295)
T ss_dssp TEEEEESCHHHHGGGCS--------------------------------SCEEEEEEEC---------------CCSHHH
T ss_pred CcEEEhhhHHHHHhcCC--------------------------------CCCCEEEEcCCCCCc-----CchhhhccHHH
Confidence 99999999999998753 679999999877642 15678999999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEe--ecC---CccEEEEEecCCCCCCCCcHHHHHHH
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE---DVNLVLFGLSSESCIKDNSFPEAAVQ 732 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~---~~N~Vl~a~~~~~~~~~~~l~~~a~~ 732 (759)
++.|+++|+|+|++++|..+. +......+.++++++|+++..+. ++. +....++|++.....+.- ..+++++
T Consensus 187 y~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~~vPtyp~G~w~f~~aSk~~~p~~~~-~~~~~~~ 265 (295)
T d1inla_ 187 YQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKGIDPIKDF-DPEKVRK 265 (295)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEEESSCCTTTTC-CHHHHHT
T ss_pred HHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEeeeceecCcccEEEEEeCCCCccccc-CHHHHhh
Confidence 999999999999999998764 45566788999999999876554 333 345678888876543332 3556666
Q ss_pred HhhhcC
Q 004354 733 LGKLVK 738 (759)
Q Consensus 733 l~~~~~ 738 (759)
++..++
T Consensus 266 ~~~~l~ 271 (295)
T d1inla_ 266 FNKELK 271 (295)
T ss_dssp CSSCCS
T ss_pred ccCCCe
Confidence 654443
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.92 E-value=5.7e-24 Score=224.21 Aligned_cols=168 Identities=18% Similarity=0.285 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 579 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl----~~~~ 579 (759)
..||. |+++++++.+ +.|++|||||+|+|++++.+.++.|..+|++|||||+|+++|++||.. ..++
T Consensus 90 ~~YhE-~l~h~pl~~~--------~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dp 160 (312)
T d2b2ca1 90 FSYQE-MLAHLPMFAH--------PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 160 (312)
T ss_dssp SHHHH-HHHHHHHHHS--------SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCT
T ss_pred HHHHH-HhhhHHHhcC--------CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCC
Confidence 45876 5556666655 788999999999999999999987777999999999999999999954 2579
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHH
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 659 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~f 659 (759)
|++++++||++||++.. .+||+||+|+..+. + |+..|++.+|
T Consensus 161 rv~i~i~Da~~~l~~~~--------------------------------~~yDvII~D~~dp~--~----~~~~L~t~eF 202 (312)
T d2b2ca1 161 KLDLFCGDGFEFLKNHK--------------------------------NEFDVIITDSSDPV--G----PAESLFGQSY 202 (312)
T ss_dssp TEEEECSCHHHHHHHCT--------------------------------TCEEEEEECCC-------------------H
T ss_pred CeEEEEchHHHHHHhCC--------------------------------CCCCEEEEcCCCCC--C----cchhhhhHHH
Confidence 99999999999998743 68999999987653 1 5788999999
Q ss_pred HHHHHHccCcCcEEEEEecCC--ChhHHHHHHHHHHHhcCceEEEe--ecC---CccEEEEEecCC
Q 004354 660 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE---DVNLVLFGLSSE 718 (759)
Q Consensus 660 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~---~~N~Vl~a~~~~ 718 (759)
++.|+++|+|+|++++|..+. .......++++++++|+++..+. ++. +....++|++..
T Consensus 203 y~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f~~aSk~~ 268 (312)
T d2b2ca1 203 YELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNA 268 (312)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESST
T ss_pred HHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccceeeEEECCC
Confidence 999999999999999997554 45566778999999999976654 333 234478888764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.5e-17 Score=165.58 Aligned_cols=136 Identities=14% Similarity=0.241 Sum_probs=110.9
Q ss_pred CHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHH
Q 004354 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (759)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~ 106 (759)
+.++|+++|++.. ..+.+....+.+...+..++.. .++.+|||+|||+|.++..|++.|+. |||||+|+.+|+.
T Consensus 9 ~~e~W~~~~~~~~--~~w~~~~~~~~l~~~~~~~l~~---~~~~rvLd~GCG~G~~a~~LA~~G~~-V~gvD~S~~ai~~ 82 (229)
T d2bzga1 9 TLEEWQDKWVNGK--TAFHQEQGHQLLKKHLDTFLKG---KSGLRVFFPLCGKAVEMKWFADRGHS-VVGVEISELGIQE 82 (229)
T ss_dssp CHHHHHHHHHHTC--CTTCCTTCCHHHHHHHHHHHTT---CCSCEEEETTCTTCTHHHHHHHTTCE-EEEECSCHHHHHH
T ss_pred CHHHHHHHHccCC--CCCccCCCCHHHHHHHHHhcCC---CCCCEEEEeCCCCcHHHHHHHhCCCc-EEEEeCCHHHHHH
Confidence 4789999998763 3444555566677777777664 67889999999999999999999995 9999999999999
Q ss_pred HHHHhcc------------------CCCCcEEEEeecccCC----CcccEEEeCCCCh----hHHHHHHHHHHHhcccCc
Q 004354 107 MLRRNVR------------------DRSDMRWRVMDMTSMQ----GGLDALMEPELGH----KLGNQYLSEVKRLLKSGG 160 (759)
Q Consensus 107 a~~r~~~------------------~~~~i~f~~~D~~~~~----gtfD~Ii~~~~~~----~~~~~~l~ei~rvLkpGG 160 (759)
|++++.. ...+++|.++|+.+++ +.||+|+.....+ .....+++++.++|||||
T Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG 162 (229)
T d2bzga1 83 FFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKF 162 (229)
T ss_dssp HHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEE
T ss_pred HHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcc
Confidence 9887532 2357899999998875 8899999865433 348899999999999999
Q ss_pred EEEEEEcC
Q 004354 161 KFVCLTLA 168 (759)
Q Consensus 161 ~liiit~~ 168 (759)
+++++++.
T Consensus 163 ~~~l~~~~ 170 (229)
T d2bzga1 163 QYLLCVLS 170 (229)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEcc
Confidence 99888764
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=2.3e-16 Score=160.64 Aligned_cols=131 Identities=16% Similarity=0.190 Sum_probs=100.6
Q ss_pred HHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHH
Q 004354 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (759)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a 107 (759)
++||+..|.... ..+......+...+......+..+|||+|||+|.++..|++.|+ +|+|||+|+.|++.|
T Consensus 9 a~~Yd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a 79 (251)
T d1wzna1 9 AEYYDTIYRRRI--------ERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVA 79 (251)
T ss_dssp GGGHHHHTHHHH--------HTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred HHHHHHHHHhhh--------hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeecccccccc
Confidence 668888776551 11222222333333222225677999999999999999999987 599999999999999
Q ss_pred HHHhccCCCCcEEEEeecccCC--CcccEEEeCC-CCh----hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 108 LRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPE-LGH----KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 108 ~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~-~~~----~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+++......+++|.++|+++++ +.||+|+|.. ..+ .....+|++++++|||||++++...
T Consensus 80 ~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 80 RRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp HHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccchheehhhhhcccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 9998777778999999999988 8999999864 222 2377999999999999999987653
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=1.8e-16 Score=158.20 Aligned_cols=112 Identities=25% Similarity=0.300 Sum_probs=94.8
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-- 129 (759)
.+..++.+++ +++.+|||||||+|.++..|++.|. +|+|+|+|+.|++.|+++.......+.++++|+.+++
T Consensus 26 ~~~~~~~~~l-----~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~ 99 (226)
T d1ve3a1 26 TLEPLLMKYM-----KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFE 99 (226)
T ss_dssp HHHHHHHHSC-----CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSC
T ss_pred HHHHHHHHhc-----CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccccccccccccccccccc
Confidence 3445555655 3678999999999999999999876 5999999999999999988766778999999999987
Q ss_pred -CcccEEEeCCCChh----HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 130 -GGLDALMEPELGHK----LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 130 -gtfD~Ii~~~~~~~----~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
++||+|+|....++ .+.++++++.++|||||++++.....
T Consensus 100 ~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~ 144 (226)
T d1ve3a1 100 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 144 (226)
T ss_dssp TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence 89999999876554 37789999999999999998876543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=7.5e-16 Score=155.80 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=96.4
Q ss_pred HHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC---
Q 004354 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ--- 129 (759)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~--- 129 (759)
..++.+.+.. +++.+|||||||+|.++..|++.+. +|+|+|+|+.|++.|++++.. ..+++.|+++|+.+++
T Consensus 5 ~~~l~~~~~~---~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (234)
T d1xxla_ 5 LGLMIKTAEC---RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 80 (234)
T ss_dssp HHHHHHHHTC---CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred HHHHHHHhCC---CCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccccccccccccccccccc
Confidence 3456666665 7899999999999999999999875 699999999999999988754 3467999999999887
Q ss_pred CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 130 GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 130 gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
++||+|+|....++. +..+++++.|+|||||++++..+..
T Consensus 81 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 81 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred cccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence 899999998876654 8999999999999999999987653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.61 E-value=1.8e-15 Score=147.19 Aligned_cols=103 Identities=17% Similarity=0.327 Sum_probs=88.3
Q ss_pred CCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-------------CCCcEEEEeecccCC---
Q 004354 66 SSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-------------RSDMRWRVMDMTSMQ--- 129 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-------------~~~i~f~~~D~~~~~--- 129 (759)
.+++.+|||+|||+|+++..|++.|+. |||+|+|+.||+.|++++... ...++|.++|+.+++
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHcCCc-eEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 368899999999999999999999995 999999999999999987432 345789999999887
Q ss_pred -CcccEEEeCCCChh----HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 130 -GGLDALMEPELGHK----LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 130 -gtfD~Ii~~~~~~~----~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
..||+|++....++ ....+++++.++|||||++++.++..
T Consensus 97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 78999999765443 37889999999999999998887653
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.61 E-value=9.5e-16 Score=153.98 Aligned_cols=102 Identities=13% Similarity=0.174 Sum_probs=89.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
+++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|+++... ..++++|+++|+++++ ++||+|+|....+
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~ 92 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH 92 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred CCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccccc
Confidence 6789999999999999999999876 599999999999999888744 4578999999999987 8999999988766
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+. ...+++++.|+|||||++++.++..
T Consensus 93 ~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 93 HFPNPASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 65 8899999999999999999987654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.60 E-value=1.8e-15 Score=154.02 Aligned_cols=117 Identities=19% Similarity=0.187 Sum_probs=93.8
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~ 129 (759)
|......+.+.+.... .++.+|||+|||+|.++..|++.|+ +|+|+|+|+.|++.|+++......+++|+++|+.+++
T Consensus 20 y~~~~~~~~~~~~~~~-~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~ 97 (246)
T d1y8ca_ 20 YKKWSDFIIEKCVENN-LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN 97 (246)
T ss_dssp HHHHHHHHHHHHHTTT-CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC
T ss_pred HHHHHHHHHHHHHHhC-CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhc
Confidence 4444445555554321 3457999999999999999999987 5999999999999999988777778999999999887
Q ss_pred --CcccEEEeCC-C-----ChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 --GGLDALMEPE-L-----GHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 --gtfD~Ii~~~-~-----~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++||+|+|.. . ....+.++|++++++|+|||.|++....
T Consensus 98 ~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 98 INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 8999999853 1 1234788999999999999998875543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.8e-15 Score=150.44 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=87.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
.++.+|||||||+|.++..|+..++.+|+|||+|+.||+.|++++... .++++|.++|+++++ ++||+|++....+
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 566899999999999999988777778999999999999999987543 356899999999886 8999999987655
Q ss_pred hH----HHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 KL----GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ~~----~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+. ...++++++++|+|||.+++.+.
T Consensus 139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~ 167 (222)
T d2ex4a1 139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDN 167 (222)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence 43 46899999999999999998854
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.56 E-value=4.8e-15 Score=146.09 Aligned_cols=100 Identities=20% Similarity=0.332 Sum_probs=86.3
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC--CcccEEEeCCCChh-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ--GGLDALMEPELGHK- 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~- 143 (759)
.+++|||||||+|.++..|++.|++ |+|+|+|+.+++.++++.... ..++.+.+.|+.++. ++||+|+|....++
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 108 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGYD-VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFL 108 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHHhhh-hccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeecC
Confidence 4569999999999999999999885 999999999999998876543 356899999998876 89999999775544
Q ss_pred ---HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 144 ---LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 144 ---~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
...++++++.++|+|||++++.++.
T Consensus 109 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 109 EAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp CTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 3778999999999999999998764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=6.9e-15 Score=148.42 Aligned_cols=96 Identities=21% Similarity=0.270 Sum_probs=81.4
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCC-CChh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPE-LGHK 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~-~~~~ 143 (759)
++.+|||+|||+|.++..|++.|+ +|+|+|+|+.|++.|+++.. ..++++|+.+++ ++||+|+|.. ..++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~-----~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~ 115 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----KNVVEAKAEDLPFPSGAFEAVLALGDVLSY 115 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----SCEEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc-----cccccccccccccccccccceeeecchhhh
Confidence 567999999999999999999987 59999999999999988742 236789998887 8999999854 4444
Q ss_pred --HHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 144 --LGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 144 --~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
....+|+++.|+|||||.+++.....
T Consensus 116 ~~d~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 116 VENKDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred hhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence 27889999999999999999887543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.55 E-value=1.1e-14 Score=149.02 Aligned_cols=110 Identities=21% Similarity=0.211 Sum_probs=91.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC----CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ----GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~----gtfD~Ii~~~~ 140 (759)
+++.+|||+|||+|..+..+++.|+.+|+|||+|+.||+.|++++... ..++.|.++|+...+ ++||+|+|...
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence 367899999999999999999988888999999999999999887543 346899999996654 68999999775
Q ss_pred Chh------HHHHHHHHHHHhcccCcEEEEEEcCchhhhhhh
Q 004354 141 GHK------LGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL 176 (759)
Q Consensus 141 ~~~------~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l 176 (759)
.++ ....+++++.++|||||+|++.+...+.+...+
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~ 144 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERY 144 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHH
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHH
Confidence 543 267899999999999999999887665554433
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=7.8e-15 Score=151.83 Aligned_cols=97 Identities=24% Similarity=0.328 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
.++.+|||+|||+|.++..|++.+. ..++|+|+|+.+++.|+++. +++.|.++|+.+++ ++||+|++....+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 158 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRLPFSDTSMDAIIRIYAPC 158 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSCSBCTTCEEEEEEESCCC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc----ccccceeeehhhccCCCCCEEEEeecCCHH
Confidence 4678999999999999999998854 36999999999999887764 68999999999988 8999999977654
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEcCchhh
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~~~~~~ 172 (759)
+ ++++.|+|||||++++.+.+..+.
T Consensus 159 ~-----~~e~~rvLkpgG~l~~~~p~~~~l 183 (268)
T d1p91a_ 159 K-----AEELARVVKPGGWVITATPGPRHL 183 (268)
T ss_dssp C-----HHHHHHHEEEEEEEEEEEECTTTT
T ss_pred H-----HHHHHHHhCCCcEEEEEeeCCcch
Confidence 3 678999999999999999876554
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.53 E-value=4.8e-14 Score=144.70 Aligned_cols=107 Identities=12% Similarity=0.133 Sum_probs=89.4
Q ss_pred hhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEE
Q 004354 60 LIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALM 136 (759)
Q Consensus 60 ~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii 136 (759)
++..+...+..+|||+|||+|+++..|+..++.+|+++|+|+.+++.|++++. ..+.++|.++|+.+++ ++||+|+
T Consensus 85 fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~-~~~~~~~~~~d~~~~~~~~~~fD~I~ 163 (254)
T d1xtpa_ 85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA-GMPVGKFILASMETATLPPNTYDLIV 163 (254)
T ss_dssp HHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT-TSSEEEEEESCGGGCCCCSSCEEEEE
T ss_pred HHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc-ccccceeEEccccccccCCCccceEE
Confidence 33333335678999999999999999988777789999999999999988863 4456899999998886 7899999
Q ss_pred eCCCChhH----HHHHHHHHHHhcccCcEEEEEEc
Q 004354 137 EPELGHKL----GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 137 ~~~~~~~~----~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+....++. ..++|++++++|+|||++++...
T Consensus 164 ~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 98765544 56899999999999999998753
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.8e-14 Score=146.79 Aligned_cols=143 Identities=14% Similarity=0.099 Sum_probs=95.6
Q ss_pred cCCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHH
Q 004354 23 GDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (759)
Q Consensus 23 ~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~ 102 (759)
++|...+||+.+|.... ..+........+...+.+.+.. ...++.+|||||||+|.++..++..++.+|+|+|+|+.
T Consensus 9 ~~f~~~~Y~~~~Y~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~ 85 (257)
T d2a14a1 9 KHFLPRDYLATYYSFDG--SPSPEAEMLKFNLECLHKTFGP-GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDR 85 (257)
T ss_dssp HHCCHHHHHHHHCCCCC--SCCHHHHHHHHHHHHHHHHHST-TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHH
T ss_pred hhcChHHHHHHHhCcCc--cccHHHHHHHHHHHHHHHHhcc-cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHH
Confidence 34667899999997652 2221110011122333344332 22456789999999999998888777878999999999
Q ss_pred HHHHHHHHhccCCCCcE-------------------------------EEEeecccC----C---CcccEEEeCCCChh-
Q 004354 103 VISDMLRRNVRDRSDMR-------------------------------WRVMDMTSM----Q---GGLDALMEPELGHK- 143 (759)
Q Consensus 103 ~I~~a~~r~~~~~~~i~-------------------------------f~~~D~~~~----~---gtfD~Ii~~~~~~~- 143 (759)
+|+.|++++........ ....+.... + ++||+|++....++
T Consensus 86 ~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 165 (257)
T d2a14a1 86 NREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA 165 (257)
T ss_dssp HHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH
T ss_pred HHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHh
Confidence 99999988754332211 111111111 1 78999999765443
Q ss_pred -----HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 144 -----LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 144 -----~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
....+++++.++|||||++++.++.
T Consensus 166 ~~~~~~~~~~l~~i~~~LkpGG~li~~~~~ 195 (257)
T d2a14a1 166 CCSLDAYRAALCNLASLLKPGGHLVTTVTL 195 (257)
T ss_dssp CSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred cccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence 3678999999999999999998764
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=1.5e-14 Score=151.21 Aligned_cols=145 Identities=17% Similarity=0.224 Sum_probs=101.8
Q ss_pred ccccccccCCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEE
Q 004354 16 TDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGIT 95 (759)
Q Consensus 16 ~~lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~Vt 95 (759)
..+|+.+.+-..+.+|+.++.... .........+...+.. .+..+|||+|||+|.++..|++.|+ +|+
T Consensus 15 ~~~~d~Y~d~~~~~~~~~~~~~~~--------~r~~~~~~~l~~~l~~---~~~~~vLD~GcG~G~~~~~la~~g~-~v~ 82 (292)
T d1xvaa_ 15 EGIPDQYADGEAARVWQLYIGDTR--------SRTAEYKAWLLGLLRQ---HGCHRVLDVACGTGVDSIMLVEEGF-SVT 82 (292)
T ss_dssp TTSCCTTTTSHHHHHHHHHHHTTC--------CBCHHHHHHHHHHHHH---TTCCEEEESSCTTSHHHHHHHHTTC-EEE
T ss_pred cccchhhhcchHHHHHHHHhcchh--------hhHHHHHHHHHHHhhh---cCCCEEEEecCCCcHHHHHHHHcCC-eee
Confidence 556666654445778988776541 1112233445555544 3567999999999999999999987 599
Q ss_pred EEeCCHHHHHHHHHHhccCCC-----CcEEEEeecccC----C--CcccEEEeCC-CC---------hhHHHHHHHHHHH
Q 004354 96 NVDFSKVVISDMLRRNVRDRS-----DMRWRVMDMTSM----Q--GGLDALMEPE-LG---------HKLGNQYLSEVKR 154 (759)
Q Consensus 96 gIDiS~~~I~~a~~r~~~~~~-----~i~f~~~D~~~~----~--gtfD~Ii~~~-~~---------~~~~~~~l~ei~r 154 (759)
|+|+|+.||+.|+++...... ...+..+|+..+ + ++||+|+|.. .. ......+|+++++
T Consensus 83 gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (292)
T d1xvaa_ 83 SVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS 162 (292)
T ss_dssp EEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHH
T ss_pred eccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHH
Confidence 999999999999887654432 234555555432 2 7899999853 11 1237789999999
Q ss_pred hcccCcEEEEEEcCchhh
Q 004354 155 LLKSGGKFVCLTLAESHV 172 (759)
Q Consensus 155 vLkpGG~liiit~~~~~~ 172 (759)
+|||||+|++.....+.+
T Consensus 163 ~LkpgG~li~~~~~~~~~ 180 (292)
T d1xvaa_ 163 MVRPGGLLVIDHRNYDYI 180 (292)
T ss_dssp TEEEEEEEEEEEECHHHH
T ss_pred HcCcCcEEEEeecCHHHH
Confidence 999999999877654433
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=5.4e-14 Score=142.99 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=93.4
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~ 128 (759)
.....+...+.. .++.+|||||||+|.++..|++. |. .|+|||+|+.+++.++++....+ .+++|+++|+.++
T Consensus 20 ~~~~~l~~~~~l---~pg~~VLDiGCG~G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 20 EKYATLGRVLRM---KPGTRILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp HHHHHHHHHTCC---CTTCEEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHHHcCC---CCCCEEEEEcCCCCHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence 334456666655 78899999999999999999876 54 69999999999999988875544 4599999999987
Q ss_pred C--CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 129 Q--GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 129 ~--gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
. ++||+|+|....++. ...++++++|+|||||++++...
T Consensus 96 ~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 96 VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence 6 899999997765554 78999999999999999998764
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.49 E-value=4.8e-14 Score=146.53 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=88.7
Q ss_pred CCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC---CcccEEEeC
Q 004354 65 TSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ---GGLDALMEP 138 (759)
Q Consensus 65 ~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~---gtfD~Ii~~ 138 (759)
..+++.+|||||||+|.++..|++. |+ +|+|+|+|+.+++.++++.... ..+++|+++|+.+++ ++||+|++.
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~ 142 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 142 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhcc
Confidence 3468899999999999999999886 55 5999999999999999886543 357999999999987 899999998
Q ss_pred CCChhH--HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 139 ELGHKL--GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 139 ~~~~~~--~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
...++. ...+++++.++|||||++++.++.
T Consensus 143 ~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~ 174 (282)
T d2o57a1 143 DAFLHSPDKLKVFQECARVLKPRGVMAITDPM 174 (282)
T ss_dssp SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhhccCHHHHHHHHHHhcCCCcEEEEEEee
Confidence 765544 889999999999999999988653
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1e-13 Score=142.89 Aligned_cols=147 Identities=16% Similarity=0.115 Sum_probs=101.6
Q ss_pred ccccccCCCCHHHHHHHHhhcCCCCccccccch-hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEE
Q 004354 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEW-PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITN 96 (759)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~-~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~Vtg 96 (759)
+-+....|...+||+.+|.... ..+.....+ +.....+.+.+.. ....+.+|||+|||+|.++...+..++.+|+|
T Consensus 6 ~~~~~~~f~~~~Y~~~~y~~~~--~~~~~~~~~~~~~~~~~~~~f~~-g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~ 82 (263)
T d2g72a1 6 VASAYQRFEPRAYLRNNYAPPR--GDLCNPNGVGPWKLRCLAQTFAT-GEVSGRTLIDIGSGPTVYQLLSACSHFEDITM 82 (263)
T ss_dssp HHHHGGGCCHHHHHHHHHSTTT--TCCSSTTSHHHHHHHHHHHHHHT-SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEE
T ss_pred HHHHHhhcCHHHHHHHHhCcCc--ccchhhhhhhhhHHHHHHHHcCC-CCCCCcEEEEeccCCCHHHHHHhcccCCeEEE
Confidence 3455677888999999997652 222222222 1222344444432 22457899999999998886666566778999
Q ss_pred EeCCHHHHHHHHHHhccCCCCc-------------------------------EEEEeecccCC---------CcccEEE
Q 004354 97 VDFSKVVISDMLRRNVRDRSDM-------------------------------RWRVMDMTSMQ---------GGLDALM 136 (759)
Q Consensus 97 IDiS~~~I~~a~~r~~~~~~~i-------------------------------~f~~~D~~~~~---------gtfD~Ii 136 (759)
+|+|+.+++.++++..+..... .....|++... +.||+|+
T Consensus 83 ~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~ 162 (263)
T d2g72a1 83 TDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALV 162 (263)
T ss_dssp ECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEE
T ss_pred EeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeee
Confidence 9999999999988764432221 23345654432 6799999
Q ss_pred eCCCChh------HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 137 EPELGHK------LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 137 ~~~~~~~------~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+....++ ...++++++.++|||||.+++.+.
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 163 SAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp EESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred eHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 9765443 378899999999999999999865
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.45 E-value=1.4e-13 Score=138.04 Aligned_cols=102 Identities=10% Similarity=0.024 Sum_probs=84.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHh---CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC-CcccEEEeCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-GGLDALMEPEL 140 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~---G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~-gtfD~Ii~~~~ 140 (759)
+++.+|||||||+|..+..|++. ...+|+|+|+|+.|++.|+++.... ...+.+.++|+.+.+ ..+|+|++...
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 117 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence 46789999999999999999874 2236999999999999999987543 345778888888877 88999999765
Q ss_pred Chh----HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 141 GHK----LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 141 ~~~----~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.++ ...+++++++|+|||||.+++.++.
T Consensus 118 l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 118 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp GGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 443 3789999999999999999998654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=1.8e-13 Score=135.17 Aligned_cols=95 Identities=18% Similarity=0.142 Sum_probs=81.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCChhH
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGHKL 144 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~ 144 (759)
+..+|||||||+|.++..+. .++|||+|+.+++.++++ ++.++++|+.+++ ++||+|+|....++.
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~ 104 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR------GVFVLKGTAENLPLKDESFDFALMVTTICFV 104 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTTCEEEEEEESCGGGS
T ss_pred CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc------ccccccccccccccccccccccccccccccc
Confidence 45689999999999998773 378999999999988764 5899999999887 799999998866654
Q ss_pred --HHHHHHHHHHhcccCcEEEEEEcCchhhh
Q 004354 145 --GNQYLSEVKRLLKSGGKFVCLTLAESHVL 173 (759)
Q Consensus 145 --~~~~l~ei~rvLkpGG~liiit~~~~~~~ 173 (759)
+..++++++++|+|||.+++.+.......
T Consensus 105 ~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 135 (208)
T d1vlma_ 105 DDPERALKEAYRILKKGGYLIVGIVDRESFL 135 (208)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECSSSHH
T ss_pred cccccchhhhhhcCCCCceEEEEecCCcchh
Confidence 88999999999999999999987665443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.43 E-value=1.7e-12 Score=130.54 Aligned_cols=126 Identities=17% Similarity=0.273 Sum_probs=103.7
Q ss_pred Ccc-ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccCCCCc
Q 004354 42 DSF-EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDM 118 (759)
Q Consensus 42 ~~~-eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i 118 (759)
..| .|......+...+..-+..+.+.|+.+|||+|||+|..+.+|++. |. ..|+|+|+|+.+++.+++++ +..+++
T Consensus 46 ~e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a-~~~~~~ 124 (227)
T d1g8aa_ 46 EEYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV-EERRNI 124 (227)
T ss_dssp EEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-SSCTTE
T ss_pred eeEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH-HhcCCc
Confidence 344 487777778877777776667789999999999999999999986 44 36999999999999998876 445678
Q ss_pred EEEEeecccCC------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 119 RWRVMDMTSMQ------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 119 ~f~~~D~~~~~------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
..+..|..... ..+|+|++.-..+.....++.++.+.|||||++++...+
T Consensus 125 ~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 125 VPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp EEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred eEEEEECCCcccccccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEEEEC
Confidence 88999886654 778999886655566888999999999999999987654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.42 E-value=2.8e-13 Score=132.17 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=96.3
Q ss_pred chhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecc
Q 004354 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (759)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~ 126 (759)
...+++..+...+.. .++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...+ .+++++++|+.
T Consensus 17 t~~eir~~il~~l~~---~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~ 92 (186)
T d1l3ia_ 17 TAMEVRCLIMCLAEP---GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92 (186)
T ss_dssp CCHHHHHHHHHHHCC---CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred ChHHHHHHHHHhcCC---CCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh
Confidence 345677777777765 789999999999999999998774 479999999999999999886554 58999999987
Q ss_pred cCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 127 SMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 127 ~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+.. ..||+|++....+ ....+++.+.+.|||||++++.....
T Consensus 93 ~~~~~~~~~D~v~~~~~~~-~~~~~~~~~~~~LkpgG~lvi~~~~~ 137 (186)
T d1l3ia_ 93 EALCKIPDIDIAVVGGSGG-ELQEILRIIKDKLKPGGRIIVTAILL 137 (186)
T ss_dssp HHHTTSCCEEEEEESCCTT-CHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred hcccccCCcCEEEEeCccc-cchHHHHHHHHHhCcCCEEEEEeecc
Confidence 764 7999999976443 35788999999999999998877653
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.42 E-value=2.2e-13 Score=136.77 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=85.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChhH-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHKL- 144 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~~- 144 (759)
.+.+|||||||+|.++..|++.|.+ |+|||+|+.+++.++++.. .++.+.++|+.+++ ++||+|++....++.
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~~-v~giD~s~~~i~~a~~~~~---~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFND-ITCVEASEEAISHAQGRLK---DGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCSC-EEEEESCHHHHHHHHHHSC---SCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCCe-EEEEeCcHHHhhhhhcccc---cccccccccccccccccccccccccceeEecC
Confidence 4568999999999999999988875 9999999999999987753 46899999998877 899999998876654
Q ss_pred -HHHHHHHHH-HhcccCcEEEEEEcCch
Q 004354 145 -GNQYLSEVK-RLLKSGGKFVCLTLAES 170 (759)
Q Consensus 145 -~~~~l~ei~-rvLkpGG~liiit~~~~ 170 (759)
...++.++. ++|+|||.+++......
T Consensus 96 d~~~~l~~i~~~~Lk~gG~l~i~~pn~~ 123 (225)
T d2p7ia1 96 DPVALLKRINDDWLAEGGRLFLVCPNAN 123 (225)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred CHHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence 888999998 89999999999876433
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=7.8e-13 Score=137.41 Aligned_cols=111 Identities=9% Similarity=0.099 Sum_probs=93.1
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCCCcc
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQGGL 132 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~gtf 132 (759)
.+...+..+.+.++.+|||||||+|.++.++++. |. +|+|||+|+.+++.++++..+.+ ..+.+...|..+++++|
T Consensus 40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f 118 (280)
T d2fk8a1 40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 118 (280)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence 4556666666789999999999999999999876 66 69999999999999999875543 45778888888888999
Q ss_pred cEEEeCCCChhH----HHHHHHHHHHhcccCcEEEEEEc
Q 004354 133 DALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 133 D~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|.|++....++. ...+|++++++|||||++++.+.
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 999997755443 68999999999999999998653
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.40 E-value=1.8e-12 Score=128.86 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=93.8
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~ 123 (759)
.|......+...+..- ..+..+|+.+|||+|||+|..+.+|++. +-..|+|+|+|+.+++.+++++.. ..++.++++
T Consensus 34 ~w~p~rsklaa~i~~g-~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-~~ni~~i~~ 111 (209)
T d1nt2a_ 34 EWVPWRSKLAAMILKG-HRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLF 111 (209)
T ss_dssp ECCGGGCHHHHHHHTS-CCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-CSSEEEECS
T ss_pred eeCCcchHHHHHHhcc-ccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc-cCCceEEEe
Confidence 3665555555544443 2245578999999999999999999986 334699999999999999888744 468999999
Q ss_pred ecccCC------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 124 DMTSMQ------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 124 D~~~~~------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|+.+.. ..+|++++..........++++++++|||||++++...
T Consensus 112 d~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 112 DASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp CTTCGGGTTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eccCccccccccceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence 998865 45666666544455688999999999999999998864
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.40 E-value=1e-12 Score=136.67 Aligned_cols=112 Identities=14% Similarity=0.179 Sum_probs=94.1
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCCCcc
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQGGL 132 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~gtf 132 (759)
.+..++..+.+.++.+|||||||.|.++.++++. |+ +|+||++|+..++.++++.... ..++++..+|..+++++|
T Consensus 50 k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f 128 (285)
T d1kpga_ 50 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 128 (285)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence 3455556666789999999999999999998876 76 5999999999999999886543 357899999999888999
Q ss_pred cEEEeCCCChhH----HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 133 DALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 133 D~Ii~~~~~~~~----~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
|.|++....++. ...+++++.|+|||||++++.++.
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 999997754443 578999999999999999987764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.39 E-value=5e-13 Score=138.91 Aligned_cols=101 Identities=19% Similarity=0.234 Sum_probs=87.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~ 142 (759)
.++.+|||+|||+|.++..|++. + ..+|+|+|+|+.+++.|+++......+++|.++|+.+++ ++||+|+|....+
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l~ 105 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLL 105 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCGG
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhhh
Confidence 46789999999999999999875 1 135999999999999999988766668999999999887 7899999988766
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+. +..+++++.++|||||.+++.+.
T Consensus 106 ~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 106 HMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp GCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 54 88999999999999999998873
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.39 E-value=5.7e-13 Score=136.35 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeCCCChhH
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEPELGHKL 144 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~~ 144 (759)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|++++...+.++++.++|+.+.. ++||+|+++- ....
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani-~~~~ 196 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANL-YAEL 196 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEEC-CHHH
T ss_pred CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcc-cccc
Confidence 4788999999999999999998886 5999999999999999988777778899999987643 8999999864 3344
Q ss_pred HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 145 GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 145 ~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
...++.++.++|||||++++..+.
T Consensus 197 l~~l~~~~~~~LkpGG~lilSgil 220 (254)
T d2nxca1 197 HAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEecc
Confidence 778899999999999999986543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.35 E-value=4e-12 Score=128.21 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=98.5
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~ 123 (759)
.|....+.+...+..-+..+...++.+|||+|||+|..+.+|++.+. ..|+|+|+|+.|++.+++++ ...+++..+..
T Consensus 51 ~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a-~~~~ni~~i~~ 129 (230)
T d1g8sa_ 51 IWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDAC-AERENIIPILG 129 (230)
T ss_dssp ECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHT-TTCTTEEEEEC
T ss_pred eECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH-hhhcccceEEE
Confidence 48888888888888877766678999999999999999999998743 36999999999999998876 45678888999
Q ss_pred ecccCC----CcccEEEe--CCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 124 DMTSMQ----GGLDALME--PELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 124 D~~~~~----gtfD~Ii~--~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|..... ..+|++++ ..........++.++++.|||||++++...
T Consensus 130 d~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k 179 (230)
T d1g8sa_ 130 DANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK 179 (230)
T ss_dssp CTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeccCcccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEee
Confidence 887765 45555444 333344588899999999999999888754
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.34 E-value=2.2e-12 Score=126.46 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=89.6
Q ss_pred HHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC---CCCcEEEEeecccCC-
Q 004354 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD---RSDMRWRVMDMTSMQ- 129 (759)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~---~~~i~f~~~D~~~~~- 129 (759)
.+.+.+.+.. .++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.+++++... ..++++..+|+.+..
T Consensus 41 t~lLi~~l~~---~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~ 116 (194)
T d1dusa_ 41 TKILVENVVV---DKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK 116 (194)
T ss_dssp HHHHHHHCCC---CTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred HHHHHHhCCc---CCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc
Confidence 3456666654 678999999999999999998764 57999999999999999876433 346899999987643
Q ss_pred -CcccEEEeCCCChh---HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 -GGLDALMEPELGHK---LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 -gtfD~Ii~~~~~~~---~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
++||+|+++...+. ....+++++.++|+|||.++++...
T Consensus 117 ~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 79999999765433 3678999999999999998876543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.34 E-value=3.3e-12 Score=133.19 Aligned_cols=111 Identities=11% Similarity=0.106 Sum_probs=91.3
Q ss_pred HHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCCCccc
Q 004354 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQGGLD 133 (759)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~gtfD 133 (759)
+...+..+.+.++.+|||||||.|.++.++++. |+ +|+||++|+..++.+++++...+ ..+.+...|....+++||
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD 128 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVD 128 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCS
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccc
Confidence 444555566689999999999999999999865 76 59999999999999988875433 457888888876669999
Q ss_pred EEEeCCCChh-----------HHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 134 ALMEPELGHK-----------LGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 134 ~Ii~~~~~~~-----------~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.|++.+..++ ....+|+++.++|||||++++-++.
T Consensus 129 ~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 129 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp EEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred eEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 9999775443 2579999999999999999987765
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.5e-12 Score=131.18 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=81.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCC---
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPE--- 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~--- 139 (759)
++.+|||||||+|..+..+++.+..+|++||+|+.+++.|+++......++.++..|+.... ++||.|+...
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~ 132 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 132 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence 67899999999999999999876667999999999999999998777777888888765442 7899998643
Q ss_pred --C-Ch-hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 140 --L-GH-KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 140 --~-~~-~~~~~~l~ei~rvLkpGG~liiit 166 (759)
. .+ .....++++++|+|||||+|++..
T Consensus 133 ~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 133 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 1 11 127889999999999999998643
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.27 E-value=9.3e-12 Score=123.15 Aligned_cols=129 Identities=12% Similarity=0.223 Sum_probs=95.8
Q ss_pred HHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHH
Q 004354 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDM 107 (759)
Q Consensus 29 ~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a 107 (759)
+||.+.++.. ...+++|-+.|. .++.. ++..|||||||+|..+..|++... .+++|+|+++.++..+
T Consensus 2 ~~~~~~~~~~-~~~p~~~~~~w~-------~~F~~----~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a 69 (204)
T d2fcaa1 2 DFLAENADIA-ISNPADYKGKWN-------TVFGN----DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTA 69 (204)
T ss_dssp HHHHHTTTTB-CSCGGGGTTCHH-------HHHTS----CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred cchhhCccch-hcCHHHHHhHHH-------HHcCC----CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHH
Confidence 3555554443 234555655543 33443 455899999999999999998843 4799999999999999
Q ss_pred HHHhcc-CCCCcEEEEeecccCC-----CcccEEEeCCCChhH----------HHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 108 LRRNVR-DRSDMRWRVMDMTSMQ-----GGLDALMEPELGHKL----------GNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 108 ~~r~~~-~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~~~~~----------~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.++... ...++.++++|+..+. +++|.|++....+|. ...++++++|+|||||.+++.|-..
T Consensus 70 ~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~ 147 (204)
T d2fcaa1 70 VQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR 147 (204)
T ss_dssp HHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred HHHHHHHhccCchhcccchhhhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECCh
Confidence 888754 4468999999997764 889999876533321 2589999999999999999988443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.21 E-value=4.8e-11 Score=121.36 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=84.7
Q ss_pred CCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC--CcccEEEeCC
Q 004354 66 SSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ--GGLDALMEPE 139 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~--gtfD~Ii~~~ 139 (759)
..|+.+|||+|||+|.++..|++. |. .+|+++|+++.+++.|++++... ..++++.+.|+.+.. +.||+|+++.
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~ 162 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADI 162 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECC
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecC
Confidence 378999999999999999999976 43 37999999999999999987543 468999999998765 7899999865
Q ss_pred CChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 140 LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 140 ~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
..+ ..++.++.++|||||++++....
T Consensus 163 p~p---~~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 163 PDP---WNHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp SCG---GGSHHHHHHTEEEEEEEEEEESS
T ss_pred Cch---HHHHHHHHHhcCCCceEEEEeCC
Confidence 443 46799999999999999987654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=4.5e-11 Score=126.74 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=82.9
Q ss_pred CCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc----------CCCCcEEEEeecccCC---C-
Q 004354 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR----------DRSDMRWRVMDMTSMQ---G- 130 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~----------~~~~i~f~~~D~~~~~---g- 130 (759)
.+++.+|||+|||+|.++..++.. ++.+++|||+|+.+++.|++.... ...+++|+++|+.+.+ .
T Consensus 149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~ 228 (328)
T d1nw3a_ 149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI 228 (328)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccccc
Confidence 378899999999999999998765 677899999999999988775432 3467999999999876 2
Q ss_pred -cccEEEeCCCChh-HHHHHHHHHHHhcccCcEEEEEE
Q 004354 131 -GLDALMEPELGHK-LGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 131 -tfD~Ii~~~~~~~-~~~~~l~ei~rvLkpGG~liiit 166 (759)
..|+|+++...+. .....+.++.++|||||++++..
T Consensus 229 ~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 229 ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 3478888765443 37889999999999999998764
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=1.2e-11 Score=127.69 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=80.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHh------CC-CeEEEEeCCHHHHHHHHHHhccC--CCCcE--EEEeecccC-------
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA------GF-HGITNVDFSKVVISDMLRRNVRD--RSDMR--WRVMDMTSM------- 128 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~------G~-~~VtgIDiS~~~I~~a~~r~~~~--~~~i~--f~~~D~~~~------- 128 (759)
++..+|||||||+|.++..++.. +. ..++|||+|+.|++.++++.... .+++. +.+.++...
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 44568999999999998887653 11 24899999999999999987432 23333 344443321
Q ss_pred -C-CcccEEEeCCCChhH--HHHHHHHHHHhcccCcEEEEEEcCchhhhh
Q 004354 129 -Q-GGLDALMEPELGHKL--GNQYLSEVKRLLKSGGKFVCLTLAESHVLG 174 (759)
Q Consensus 129 -~-gtfD~Ii~~~~~~~~--~~~~l~ei~rvLkpGG~liiit~~~~~~~~ 174 (759)
+ ++||+|+|....++. +..++++++++|+|||.++++.........
T Consensus 119 ~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~ 168 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWD 168 (280)
T ss_dssp SSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHH
T ss_pred CCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchHH
Confidence 1 789999998876665 889999999999999999999876654433
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.17 E-value=4.8e-11 Score=122.25 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=93.1
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhcc----CCCCcEEEEe
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVR----DRSDMRWRVM 123 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~----~~~~i~f~~~ 123 (759)
|+.-...+..++.. .|+.+|||+|||+|.++..|++. |. .+|+++|+++.+++.|++++.. ...++.+.++
T Consensus 81 ypkD~s~Ii~~l~i---~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~ 157 (264)
T d1i9ga_ 81 YPKDAAQIVHEGDI---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157 (264)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred chHHHHHHHHHhCC---CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec
Confidence 44455566666665 79999999999999999999986 44 3799999999999999987643 2468999999
Q ss_pred ecccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 124 DMTSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 124 D~~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
|+.+.+ +.||+|+++-..+ ..++.++.++|||||++++.+..-.
T Consensus 158 d~~~~~~~~~~fDaV~ldlp~P---~~~l~~~~~~LkpGG~lv~~~P~i~ 204 (264)
T d1i9ga_ 158 DLADSELPDGSVDRAVLDMLAP---WEVLDAVSRLLVAGGVLMVYVATVT 204 (264)
T ss_dssp CGGGCCCCTTCEEEEEEESSCG---GGGHHHHHHHEEEEEEEEEEESSHH
T ss_pred ccccccccCCCcceEEEecCCH---HHHHHHHHhccCCCCEEEEEeCccC
Confidence 998765 8999999865443 4778999999999999998875543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.17 E-value=6.6e-11 Score=120.62 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=82.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC-CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~ 142 (759)
....+|||||||+|.++..+++... ..++++|+ +.+++.++++.... ..+++++.+|+.+.. +.||+|++....|
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh 157 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLL 157 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGG
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccc
Confidence 4567999999999999999998843 36999998 56888888877544 357999999987654 7899999977655
Q ss_pred hH----HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 143 KL----GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 143 ~~----~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+. ..++|++++++|||||++++....
T Consensus 158 ~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~ 187 (253)
T d1tw3a2 158 NWPDHDAVRILTRCAEALEPGGRILIHERD 187 (253)
T ss_dssp GSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence 32 568899999999999999988753
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.14 E-value=8.7e-11 Score=117.82 Aligned_cols=108 Identities=15% Similarity=0.206 Sum_probs=91.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
.++++||.||.+.|..+.++...+| +.+|+++|+||...++|+++| |+ +++++++++||.+++.+....
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~--~~~i~~~~g~a~~~L~~l~~~----- 130 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV--DHKIDFREGPALPVLDEMIKD----- 130 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHC-----
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc--ccceeeeehHHHHHHHHHHhc-----
Confidence 4679999999999999999998877 569999999999999999999 66 679999999999999987521
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
+.....||+||+|++.... .++++.+.++|+|||++++.
T Consensus 131 ---------------------~~~~~~fD~iFiDa~k~~y-------------~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 131 ---------------------EKNHGSYDFIFVDADKDNY-------------LNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp ---------------------GGGTTCBSEEEECSCSTTH-------------HHHHHHHHHHBCTTCCEEEE
T ss_pred ---------------------cccCCceeEEEeccchhhh-------------HHHHHHHHhhcCCCcEEEEc
Confidence 0113679999999977532 68999999999999988874
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=9.6e-11 Score=116.49 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=85.6
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccc
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTS 127 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~ 127 (759)
+.+...+.+.+.. .++.+|||||||+|.++..|++. |- ..|+++|+++.+++.+++++... ..++.++++|..+
T Consensus 61 P~~~a~~l~~l~l---~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~ 137 (213)
T d1dl5a1 61 PSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY 137 (213)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred chhhHHHHHhhhc---cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHH
Confidence 3444555566654 78999999999999999999875 32 36999999999999999987553 4678999999877
Q ss_pred CC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 128 MQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 128 ~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
.. ++||+|++....++.+ .++.+.|||||++++..
T Consensus 138 ~~~~~~~fD~I~~~~~~~~~p----~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 138 GVPEFSPYDVIFVTVGVDEVP----ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CCGGGCCEEEEEECSBBSCCC----HHHHHHEEEEEEEEEEB
T ss_pred ccccccchhhhhhhccHHHhH----HHHHHhcCCCcEEEEEE
Confidence 55 7899999987654433 45678899999998754
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.12 E-value=1.5e-10 Score=114.26 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=84.2
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC-----CcccEEEeCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ-----GGLDALMEPEL 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~-----gtfD~Ii~~~~ 140 (759)
.+..|||||||+|.++..++.... .+++|+|+++.++..+.++... ...++.++++|+.++. +++|.|++...
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 345799999999999999998743 4799999999999999887754 4568999999987764 88999988654
Q ss_pred ChhH----------HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 141 GHKL----------GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 141 ~~~~----------~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
.+|. ...+++.+.++|||||.+++.|-..+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~ 150 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG 150 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCcc
Confidence 3321 37899999999999999999884443
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=2.5e-10 Score=117.19 Aligned_cols=115 Identities=16% Similarity=0.190 Sum_probs=90.5
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeec
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~ 125 (759)
|+.-...+..++.. .++.+|||+|||+|.++..|++. |. .+|+++|+++.+++.|++++.... .++.+...|+
T Consensus 88 ypkd~~~Ii~~l~i---~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~ 164 (266)
T d1o54a_ 88 YPKDSSFIAMMLDV---KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI 164 (266)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG
T ss_pred chHHHHHHHHhhCC---CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc
Confidence 44455566666665 79999999999999999999876 32 369999999999999999876543 4577778887
Q ss_pred ccCC--CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 126 TSMQ--GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 126 ~~~~--gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
.... ..||.|+..-.. +..+++++.++|||||++++......
T Consensus 165 ~~~~~~~~~D~V~~d~p~---p~~~l~~~~~~LKpGG~lv~~~P~~~ 208 (266)
T d1o54a_ 165 SEGFDEKDVDALFLDVPD---PWNYIDKCWEALKGGGRFATVCPTTN 208 (266)
T ss_dssp GGCCSCCSEEEEEECCSC---GGGTHHHHHHHEEEEEEEEEEESSHH
T ss_pred cccccccceeeeEecCCC---HHHHHHHHHhhcCCCCEEEEEeCccc
Confidence 5443 789999986543 35689999999999999998875543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.6e-10 Score=115.29 Aligned_cols=107 Identities=15% Similarity=0.265 Sum_probs=91.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
.++++||.||.|+|..+.++...+| +.+|+++|+||...++|+++| |+ .++++++++||.+.+.+...
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~--~~~i~~~~Gda~e~l~~~~~------ 129 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA--EHKIDLRLKPALETLDELLA------ 129 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHH------
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc--cceEEEEEeehhhcchhhhh------
Confidence 5789999999999999999988876 579999999999999999998 66 67999999999999987641
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
......||+|++|.+.... .++++.+.++|+|||++++.
T Consensus 130 ---------------------~~~~~~fD~ifiD~dk~~y-------------~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 130 ---------------------AGEAGTFDVAVVDADKENC-------------SAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp ---------------------TTCTTCEEEEEECSCSTTH-------------HHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------hcccCCccEEEEeCCHHHH-------------HHHHHHHHHHhcCCcEEEEe
Confidence 1124679999999877532 67899999999999999874
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.10 E-value=2.1e-10 Score=114.69 Aligned_cols=107 Identities=12% Similarity=0.040 Sum_probs=84.8
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ- 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~- 129 (759)
+.+...+.+.+.. .++.+|||||||+|.++..|+..+. +|+++|+++.+++.++++.. ...++.++++|.....
T Consensus 56 p~~~a~ml~~L~l---~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~-~~~nv~~~~~d~~~g~~ 130 (224)
T d1vbfa_ 56 LNLGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLS-YYNNIKLILGDGTLGYE 130 (224)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHT-TCSSEEEEESCGGGCCG
T ss_pred hhhHHHHHHHhhh---cccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHh-cccccccccCchhhcch
Confidence 4444455666654 7899999999999999999988854 69999999999999988764 4578999999987643
Q ss_pred --CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 130 --GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 130 --gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
++||+|++....++.+ ..+.+.|+|||++++..
T Consensus 131 ~~~pfD~Iiv~~a~~~ip----~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 131 EEKPYDRVVVWATAPTLL----CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp GGCCEEEEEESSBBSSCC----HHHHHTEEEEEEEEEEE
T ss_pred hhhhHHHHHhhcchhhhh----HHHHHhcCCCCEEEEEE
Confidence 7899999976544333 34567899999998753
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.3e-10 Score=116.75 Aligned_cols=108 Identities=10% Similarity=0.004 Sum_probs=86.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.||+|+|.++.++....+ .++++||+||.+++.|++++.- ...+++++.+|+........
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~------------ 118 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR-QTHKVIPLKGLWEDVAPTLP------------ 118 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGG-CSSEEEEEESCHHHHGGGSC------------
T ss_pred CCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhh-cccccccccccccccccccc------------
Confidence 457999999999999999988754 4899999999999999999853 35678999999988866654
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC-hHHHHHHHHHccCcCcEEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~-~~~fl~~~~~~L~~~Gilv~ 675 (759)
..+||.|++|....... ..++. ...+++.+++.|+|||+|++
T Consensus 119 -------------------~~~fD~i~fD~~~~~~~------~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 119 -------------------DGHFDGILYDTYPLSEE------TWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp -------------------TTCEEEEEECCCCCBGG------GTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred -------------------cccccceeecccccccc------cccccCHHHHHHHHHHHcCCCcEEEE
Confidence 46899999988654321 22222 45689999999999999986
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=2.8e-10 Score=119.37 Aligned_cols=97 Identities=19% Similarity=0.247 Sum_probs=78.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc-cCCCCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~-~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
.++.+|||||||+|.++..+++.|.++|+++|.|+.++..++.... ....++.++++|+.++. ..||+|++....+
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~ 113 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 113 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeee
Confidence 3578999999999999999999998889999999988754333222 23467999999999886 7999999854222
Q ss_pred -----hHHHHHHHHHHHhcccCcEEE
Q 004354 143 -----KLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 143 -----~~~~~~l~ei~rvLkpGG~li 163 (759)
.....++....++|+|||+++
T Consensus 114 ~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 114 FLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred ecccccccHHHHHHHHhcCCCCcEEe
Confidence 237788888899999999987
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.06 E-value=2.5e-10 Score=120.71 Aligned_cols=95 Identities=18% Similarity=0.238 Sum_probs=77.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC---CcccEEEeCCCC-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ---GGLDALMEPELG- 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~---gtfD~Ii~~~~~- 141 (759)
++.+|||||||+|.++..+++.|...|+++|.|+ +++.+++..... ..++.++++|+.+++ .+||+|++....
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 5789999999999999999999988899999997 556666655433 357899999999887 789999985422
Q ss_pred ----hhHHHHHHHHHHHhcccCcEEE
Q 004354 142 ----HKLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 142 ----~~~~~~~l~ei~rvLkpGG~li 163 (759)
......++..+.|+|||||+++
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccchhHHHHHHHHHhccCCCeEEE
Confidence 2237889999999999999886
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=2.8e-10 Score=113.94 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=86.0
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhccC------CCCcEEE
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD------RSDMRWR 121 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~~------~~~i~f~ 121 (759)
.+.+...+.+++.. ...++.+|||||||+|.++..|++. |. ..|+++|+++.+++.+++++.+. ..++.+.
T Consensus 59 ~P~~~a~~le~L~~-~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~ 137 (224)
T d1i1na_ 59 APHMHAYALELLFD-QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 137 (224)
T ss_dssp CHHHHHHHHHHTTT-TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE
T ss_pred hhHHHHHHHHHHhh-ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEE
Confidence 34555566666621 2267899999999999999888875 43 36999999999999998887532 3578999
Q ss_pred EeecccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 122 VMDMTSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 122 ~~D~~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
++|..... +.||+|++....++. ...+.+.|||||++++..
T Consensus 138 ~gD~~~~~~~~~~fD~I~~~~~~~~i----p~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 138 VGDGRMGYAEEAPYDAIHVGAAAPVV----PQALIDQLKPGGRLILPV 181 (224)
T ss_dssp ESCGGGCCGGGCCEEEEEECSBBSSC----CHHHHHTEEEEEEEEEEE
T ss_pred Eeecccccchhhhhhhhhhhcchhhc----CHHHHhhcCCCcEEEEEE
Confidence 99987765 789999998755443 345778999999999854
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.04 E-value=3.9e-10 Score=121.88 Aligned_cols=110 Identities=9% Similarity=0.009 Sum_probs=80.8
Q ss_pred HHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc----------CCCCcEE-EEe
Q 004354 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR----------DRSDMRW-RVM 123 (759)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~----------~~~~i~f-~~~ 123 (759)
.+.+.+......++++|||||||+|.++..++.. |+.+++|||+|+.+++.|+++... ......+ ...
T Consensus 204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 3444444344478999999999999999999865 777899999999999999887632 1122333 234
Q ss_pred ecccCC------CcccEEEeCCCCh-hHHHHHHHHHHHhcccCcEEEEE
Q 004354 124 DMTSMQ------GGLDALMEPELGH-KLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 124 D~~~~~------gtfD~Ii~~~~~~-~~~~~~l~ei~rvLkpGG~liii 165 (759)
|..+.+ ...|+|+++...+ ......+.++.|+|||||++++.
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred chhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 444333 5688999876433 33789999999999999998875
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=3.3e-10 Score=119.25 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=77.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc--CCCCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR--DRSDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~--~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
++.+|||||||+|.++..+++.|.++|+|+|.|+.+. .+++.... ...++.++++|+.+++ +.||+|++....+
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~-~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISD-YAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHH-HHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHh-hhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 5689999999999999999999988899999998654 45444332 2356999999999887 7899999854221
Q ss_pred -----hHHHHHHHHHHHhcccCcEEE
Q 004354 143 -----KLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 143 -----~~~~~~l~ei~rvLkpGG~li 163 (759)
.....++..+.|+|+|||.++
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 237899999999999999987
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=8.5e-10 Score=116.16 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=88.7
Q ss_pred hhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHhcc------------CC
Q 004354 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVR------------DR 115 (759)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~-~~VtgIDiS~~~I~~a~~r~~~------------~~ 115 (759)
|+.-...+..++.. .|+.+|||+|||+|.++..|++. |. .+|+++|+++.+++.|++++.. ..
T Consensus 83 ypkD~~~Il~~l~i---~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~ 159 (324)
T d2b25a1 83 FPKDINMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP 159 (324)
T ss_dssp CHHHHHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred ccccHHHHHHHhCC---CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 44445556666665 78999999999999999999986 43 3699999999999999987642 13
Q ss_pred CCcEEEEeecccCC-----CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 116 SDMRWRVMDMTSMQ-----GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 116 ~~i~f~~~D~~~~~-----gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.++++.+.|+.+.. +.||+|+..-..+ ..++.++.++|||||++++...+-
T Consensus 160 ~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~P---~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 160 DNVDFIHKDISGATEDIKSLTFDAVALDMLNP---HVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp CCEEEEESCTTCCC-------EEEEEECSSST---TTTHHHHGGGEEEEEEEEEEESSH
T ss_pred cceeEEecchhhcccccCCCCcceEeecCcCH---HHHHHHHHHhccCCCEEEEEeCCH
Confidence 57899999987764 6899999854333 357999999999999999877543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.00 E-value=4.5e-10 Score=118.64 Aligned_cols=119 Identities=15% Similarity=0.103 Sum_probs=95.0
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEe
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVM 123 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~ 123 (759)
+|.+....+..+..++ .++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++++...+ .+++|+++
T Consensus 128 ~flDqr~~r~~~~~~~-----~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~ 202 (324)
T d2as0a2 128 FFLDQRENRLALEKWV-----QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG 202 (324)
T ss_dssp CCSTTHHHHHHHGGGC-----CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred cccchhhHHHHHHhhc-----CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeec
Confidence 5666555566666655 3578999999999999999999888889999999999999999886554 36899999
Q ss_pred ecccCC-------CcccEEEeCCCCh-----------hHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 124 DMTSMQ-------GGLDALMEPELGH-----------KLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 124 D~~~~~-------gtfD~Ii~~~~~~-----------~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
|+.+.. .+||+|+++.... .....++..+.++|+|||++++.+.+.
T Consensus 203 d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 203 SAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred hhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 987643 6899999965211 115668888999999999999988664
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.97 E-value=5.9e-10 Score=109.10 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=73.3
Q ss_pred ccccCCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeC
Q 004354 20 QTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF 99 (759)
Q Consensus 20 ~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDi 99 (759)
+....|.++..|-+-| .....+...+...+.....-.+.+|||+|||+|.++..++..|..+|+|+|+
T Consensus 12 ~~~~~~~~~~~~leQy------------~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDi 79 (197)
T d1ne2a_ 12 QKLQQQGNFKNYLEQY------------PTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDI 79 (197)
T ss_dssp HTSCCCC--------C------------CCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEES
T ss_pred hcCCCCCCCCcccccC------------CCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCccccccc
Confidence 4445566655554433 3334444443322221111357899999999999999988889888999999
Q ss_pred CHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCC
Q 004354 100 SKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPEL 140 (759)
Q Consensus 100 S~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~ 140 (759)
++.+++.++++. .+++|+++|+.++++.||+|+++..
T Consensus 80 d~~a~~~ar~N~----~~~~~~~~D~~~l~~~fD~Vi~NPP 116 (197)
T d1ne2a_ 80 DPDAIETAKRNC----GGVNFMVADVSEISGKYDTWIMNPP 116 (197)
T ss_dssp CHHHHHHHHHHC----TTSEEEECCGGGCCCCEEEEEECCC
T ss_pred CHHHHHHHHHcc----ccccEEEEehhhcCCcceEEEeCcc
Confidence 999999888765 5789999999998899999999864
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.97 E-value=1.8e-09 Score=106.11 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=65.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPE 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~ 139 (759)
.+.+|||+|||+|.++..++..|...|+|+|+|+.+++.+++++.....+.+++++|+..+.+.||+|+++.
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nP 117 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNP 117 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcC
Confidence 577999999999999999988888789999999999999999887777788999999998889999999976
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.95 E-value=3.1e-09 Score=102.85 Aligned_cols=117 Identities=19% Similarity=0.214 Sum_probs=90.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..+.... .+|++||+||.+++.|++.+ |+ .++++++++|+.+.+..
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl--~~~v~~~~gda~~~~~~---------- 97 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGL--GDNVTLMEGDAPEALCK---------- 97 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTC--CTTEEEEESCHHHHHTT----------
T ss_pred CCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCC--CcceEEEECchhhcccc----------
Confidence 455799999999999998887653 58999999999999999875 65 46899999999888643
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhH
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 684 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~ 684 (759)
...||+|+++.... ...++++.+.+.|+|+|.++++......
T Consensus 98 -----------------------~~~~D~v~~~~~~~-------------~~~~~~~~~~~~LkpgG~lvi~~~~~e~-- 139 (186)
T d1l3ia_ 98 -----------------------IPDIDIAVVGGSGG-------------ELQEILRIIKDKLKPGGRIIVTAILLET-- 139 (186)
T ss_dssp -----------------------SCCEEEEEESCCTT-------------CHHHHHHHHHHTEEEEEEEEEEECBHHH--
T ss_pred -----------------------cCCcCEEEEeCccc-------------cchHHHHHHHHHhCcCCEEEEEeecccc--
Confidence 25799999954221 1268999999999999999988754432
Q ss_pred HHHHHHHHHHhc
Q 004354 685 KDMVISRMKMVF 696 (759)
Q Consensus 685 ~~~v~~~l~~vF 696 (759)
...+.+.++...
T Consensus 140 ~~~~~~~l~~~~ 151 (186)
T d1l3ia_ 140 KFEAMECLRDLG 151 (186)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 233455666543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.95 E-value=2.1e-09 Score=109.56 Aligned_cols=100 Identities=17% Similarity=0.063 Sum_probs=81.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC-CcccEEEeCCCCh
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-GGLDALMEPELGH 142 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~ 142 (759)
....+|||||||+|.++..+++... .+++++|+ +.+++.+++++... ..++.+...|+.+.. ..||+|++....|
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh 158 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLL 158 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGG
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcccccc
Confidence 4567999999999999999998843 26999997 77888888876543 356899999987643 6799999977655
Q ss_pred h----HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 K----LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ~----~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
. ....+|++++++|||||+++++..
T Consensus 159 ~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 159 NWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 3 267889999999999999999875
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.94 E-value=6.8e-10 Score=110.25 Aligned_cols=135 Identities=12% Similarity=0.057 Sum_probs=99.1
Q ss_pred CCCCHHHHHHHHhhcCCCCccccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHH
Q 004354 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKV 102 (759)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~ 102 (759)
.|-..+|+...|......-...-+...+.+...+.+.+.. .++.+|||||||+|..+..|+.. |. +|+++|.++.
T Consensus 37 ~Fvp~~~~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~l---~~g~~VLeIGsGsGY~taila~l~g~-~V~~ie~~~~ 112 (215)
T d1jg1a_ 37 LSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIANL---KPGMNILEVGTGSGWNAALISEIVKT-DVYTIERIPE 112 (215)
T ss_dssp GGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHTC---CTTCCEEEECCTTSHHHHHHHHHHCS-CEEEEESCHH
T ss_pred hcCCHHHhhcccccCCcccchhhhhhhhhhHHHHHHhhcc---CccceEEEecCCCChhHHHHHHhhCc-eeEEEeccHH
Confidence 4666777766665442000111233345566667777765 78999999999999999988876 53 5999999999
Q ss_pred HHHHHHHHhccC-CCCcEEEEeecccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 103 VISDMLRRNVRD-RSDMRWRVMDMTSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 103 ~I~~a~~r~~~~-~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+++.+++++... ..++.++++|..+.. +.||.|++.......+.. +...|+|||++++..
T Consensus 113 l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip~~----l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 113 LVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEP----LIEQLKIGGKLIIPV 176 (215)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHH----HHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecccccCCHH----HHHhcCCCCEEEEEE
Confidence 999999988654 478999999998754 899999997755444444 455799999998754
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.92 E-value=1.5e-09 Score=101.85 Aligned_cols=99 Identities=14% Similarity=0.098 Sum_probs=80.4
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC----CcccEEEeCCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ----GGLDALMEPELG 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~----gtfD~Ii~~~~~ 141 (759)
.+.+|||+|||+|.++...+.+|.++|+++|.++.+++.+++++...+ .+++++++|+.... +.||+|++.+..
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 578999999999999999999999899999999999999988875543 45899999987753 889999997643
Q ss_pred hh-HHHHHHHHHH--HhcccCcEEEEEE
Q 004354 142 HK-LGNQYLSEVK--RLLKSGGKFVCLT 166 (759)
Q Consensus 142 ~~-~~~~~l~ei~--rvLkpGG~liiit 166 (759)
.. .....+..+. ++|+|||.+++.+
T Consensus 94 ~~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 94 AKETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 32 2556666654 5799999988764
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=2e-09 Score=110.61 Aligned_cols=112 Identities=16% Similarity=0.071 Sum_probs=86.5
Q ss_pred CCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC--CcccEEEeCCCC--
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--GGLDALMEPELG-- 141 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~--gtfD~Ii~~~~~-- 141 (759)
.+.+|||+|||+|.++..++... -.+|+++|+|+.+++.|++++.... .+++|+++|+.+.. ++||+|+|+...
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi~ 187 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYID 187 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBC
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhhh
Confidence 56789999999999999998763 3479999999999999998875544 46999999987654 689999997410
Q ss_pred -------------------------hhHHHHHHHHHHHhcccCcEEEEEE-cCchhhhhhhccc
Q 004354 142 -------------------------HKLGNQYLSEVKRLLKSGGKFVCLT-LAESHVLGLLFPK 179 (759)
Q Consensus 142 -------------------------~~~~~~~l~ei~rvLkpGG~liiit-~~~~~~~~~l~~~ 179 (759)
.....+++.++.+.|+|||.+++.. +.|......++..
T Consensus 188 ~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~ 251 (274)
T d2b3ta1 188 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFIL 251 (274)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHH
T ss_pred hhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHH
Confidence 0126778999999999999988853 3444444445443
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.89 E-value=2.6e-09 Score=109.08 Aligned_cols=116 Identities=10% Similarity=0.072 Sum_probs=89.8
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEe
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVM 123 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~ 123 (759)
|+.....-+..+...+ .++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++++...+ ..++++++
T Consensus 90 f~~~~~~er~ri~~~~-----~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~ 164 (260)
T d2frna1 90 FSPANVKERVRMAKVA-----KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 164 (260)
T ss_dssp CCGGGHHHHHHHHHHC-----CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred EecCCHHHHHHHHhhc-----CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEc
Confidence 3333333344455554 3688999999999999999998887689999999999999998875433 45899999
Q ss_pred ecccCC--CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 124 DMTSMQ--GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 124 D~~~~~--gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
|+.++. +.||.|+++.... ...++..+.++|++||.+.+-.+.
T Consensus 165 D~~~~~~~~~~D~Ii~~~p~~--~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 165 DNRDFPGENIADRILMGYVVR--THEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp CTTTCCCCSCEEEEEECCCSS--GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred chHHhccCCCCCEEEECCCCc--hHHHHHHHHhhcCCCCEEEEEecc
Confidence 998887 7899999864322 346778888999999998765543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.88 E-value=6.3e-09 Score=102.38 Aligned_cols=131 Identities=11% Similarity=0.120 Sum_probs=97.5
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
.+-||.||+|.|.....|....|+..+++||+++.++..|.+..--..-++++++.+||...+....
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~------------- 96 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE------------- 96 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC-------------
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccC-------------
Confidence 4579999999999999999999999999999999999999877611122579999999998775544
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHHHH
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 689 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~ 689 (759)
+..+|.|++- -+++..--.-....+++.+||+.+++.|+|||+|.+- +.+..+.+.++
T Consensus 97 ------------------~~~~d~v~i~--fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~--TD~~~y~~~~~ 154 (204)
T d2fcaa1 97 ------------------PGEVKRVYLN--FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK--TDNRGLFEYSL 154 (204)
T ss_dssp ------------------TTSCCEEEEE--SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE--ESCHHHHHHHH
T ss_pred ------------------chhhhccccc--cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE--ECChHHHHHHH
Confidence 3668888873 2332110000123477899999999999999998753 45666666666
Q ss_pred HHHHHh
Q 004354 690 SRMKMV 695 (759)
Q Consensus 690 ~~l~~v 695 (759)
+.+.+.
T Consensus 155 ~~~~~~ 160 (204)
T d2fcaa1 155 KSFSEY 160 (204)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 666554
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.88 E-value=2.7e-09 Score=112.12 Aligned_cols=119 Identities=18% Similarity=0.108 Sum_probs=92.3
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~---~~i~f~~ 122 (759)
||.+....+..+...+ .++.+|||+.||+|.++.+++..|...|+++|+|+.+++.+++++..++ .+++|++
T Consensus 127 lflDqR~~r~~l~~~~-----~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~ 201 (317)
T d2b78a2 127 IFLDQRQVRNELINGS-----AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 201 (317)
T ss_dssp SCGGGHHHHHHHHHTT-----TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE
T ss_pred CcHHHHHHHHHHHHHh-----hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEE
Confidence 5555444444444433 3578999999999999999888888889999999999999999875443 3689999
Q ss_pred eecccCC-------CcccEEEeCCCC-----------hhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 123 MDMTSMQ-------GGLDALMEPELG-----------HKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 123 ~D~~~~~-------gtfD~Ii~~~~~-----------~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+|+.+.- .+||+|++.+.. .....++++.+.++|+|||.+++.+.++
T Consensus 202 ~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 202 MDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 9997653 589999996521 1125678999999999999999988753
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.87 E-value=2.1e-09 Score=108.99 Aligned_cols=121 Identities=17% Similarity=0.258 Sum_probs=92.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F-gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
....+||.+|.|.|+++.+|.... |..+|+++|+++.+++.|++++ .+....+++++.+|..+.+
T Consensus 84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~------------- 150 (250)
T d1yb2a1 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI------------- 150 (250)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC-------------
T ss_pred CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc-------------
Confidence 455799999999999999888764 6779999999999999999987 2223578999999965431
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHH
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 685 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~ 685 (759)
.+..||+|++|+-++ .+++..+.+.|+|||.|++.+.+ -+..
T Consensus 151 ---------------------~~~~fD~V~ld~p~p---------------~~~l~~~~~~LKpGG~lv~~~P~--i~Qv 192 (250)
T d1yb2a1 151 ---------------------SDQMYDAVIADIPDP---------------WNHVQKIASMMKPGSVATFYLPN--FDQS 192 (250)
T ss_dssp ---------------------CSCCEEEEEECCSCG---------------GGSHHHHHHTEEEEEEEEEEESS--HHHH
T ss_pred ---------------------ccceeeeeeecCCch---------------HHHHHHHHHhcCCCceEEEEeCC--cChH
Confidence 135799999976332 36799999999999999987654 3334
Q ss_pred HHHHHHHHHh-cCce
Q 004354 686 DMVISRMKMV-FNHL 699 (759)
Q Consensus 686 ~~v~~~l~~v-F~~v 699 (759)
..+++.|++. |..+
T Consensus 193 ~~~~~~l~~~gf~~i 207 (250)
T d1yb2a1 193 EKTVLSLSASGMHHL 207 (250)
T ss_dssp HHHHHHSGGGTEEEE
T ss_pred HHHHHHHHHCCCcee
Confidence 4566777654 5543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.87 E-value=1.3e-09 Score=114.59 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=83.1
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC-------CcccEEEeCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-------GGLDALMEPE 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~-------gtfD~Ii~~~ 139 (759)
++.+|||++||+|.++.+++. |..+|+++|+|+.+++.+++++...+ .+++++++|+.+.. ++||+|+++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 578999999999999999875 45579999999999999999876544 57999999987753 6899999865
Q ss_pred CC-----------hhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 140 LG-----------HKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 140 ~~-----------~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
.. ......++..+.++|+|||.+++.+.+.
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 21 1125678899999999999999988754
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.85 E-value=8.4e-09 Score=100.36 Aligned_cols=125 Identities=16% Similarity=0.245 Sum_probs=93.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++..+....+ +|++||+|+.+++.|++.+ ++ ...+++++.+|..+.+.
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l-~~~~i~~~~~d~~~~~~----------- 116 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNL-DNYDIRVVHSDLYENVK----------- 116 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTC-TTSCEEEEECSTTTTCT-----------
T ss_pred CCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCC-ccceEEEEEcchhhhhc-----------
Confidence 4567999999999999999988753 7999999999999999876 44 34679999999755321
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC---ChHHHHHHHHHccCcCcEEEEEecCCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF---VEGSFLLTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f---~~~~fl~~~~~~L~~~Gilv~N~~~~~ 681 (759)
+..||+|+.|. |-+. ....+++.+.+.|+|||.+++-+. .
T Consensus 117 -----------------------~~~fD~Ii~~~------------p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~-~- 159 (194)
T d1dusa_ 117 -----------------------DRKYNKIITNP------------PIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ-T- 159 (194)
T ss_dssp -----------------------TSCEEEEEECC------------CSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE-S-
T ss_pred -----------------------cCCceEEEEcc------------cEEecchhhhhHHHHHHHhcCcCcEEEEEEe-C-
Confidence 36799999942 2111 235789999999999998776332 2
Q ss_pred hhHHHHHHHHHHHhcCceEEEe
Q 004354 682 QATKDMVISRMKMVFNHLFCLQ 703 (759)
Q Consensus 682 ~~~~~~v~~~l~~vF~~v~~~~ 703 (759)
....+.+...+.+.|..+-.+.
T Consensus 160 ~~~~~~~~~~l~~~f~~~~~~~ 181 (194)
T d1dusa_ 160 KQGAKSLAKYMKDVFGNVETVT 181 (194)
T ss_dssp THHHHHHHHHHHHHHSCCEEEE
T ss_pred cCCHHHHHHHHHHhCCcEEEEE
Confidence 2233456677888898776554
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.83 E-value=8e-09 Score=100.60 Aligned_cols=116 Identities=14% Similarity=0.169 Sum_probs=95.1
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~ 129 (759)
+.+...+..++.. .++..+||++||+|..+..+++. ....|+|+|.++.|++.++++......++.++++++.++.
T Consensus 9 pVll~evi~~l~~---~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~ 85 (192)
T d1m6ya2 9 PVMVREVIEFLKP---EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD 85 (192)
T ss_dssp CTTHHHHHHHHCC---CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred chHHHHHHHhhCC---CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHH
Confidence 4566667777765 78899999999999999999986 2346999999999999999988666678999999987765
Q ss_pred --------CcccEEEeCCC-----------ChhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 130 --------GGLDALMEPEL-----------GHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 130 --------gtfD~Ii~~~~-----------~~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+++|.|+..-. ........+..+.++|+|||++++++|..
T Consensus 86 ~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 86 FLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp HHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred HHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 78999986421 11227889999999999999999999874
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.82 E-value=8.9e-09 Score=105.05 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=94.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.+|.|.|+++.+|... .|..+|.++|+++++++.|++.+ +....++++++++|+.+. .
T Consensus 95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~--~--------- 163 (264)
T d1i9ga_ 95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--E--------- 163 (264)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--C---------
T ss_pred CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc--c---------
Confidence 45679999999999999988877 47789999999999999999865 212346899999997542 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
..+..||+||+|+.++ .+++..+++.|+|||.+++-+. .-+
T Consensus 164 ----------------------~~~~~fDaV~ldlp~P---------------~~~l~~~~~~LkpGG~lv~~~P--~i~ 204 (264)
T d1i9ga_ 164 ----------------------LPDGSVDRAVLDMLAP---------------WEVLDAVSRLLVAGGVLMVYVA--TVT 204 (264)
T ss_dssp ----------------------CCTTCEEEEEEESSCG---------------GGGHHHHHHHEEEEEEEEEEES--SHH
T ss_pred ----------------------ccCCCcceEEEecCCH---------------HHHHHHHHhccCCCCEEEEEeC--ccC
Confidence 1246799999987443 4689999999999999997663 344
Q ss_pred HHHHHHHHHHH--hcCceEEE
Q 004354 684 TKDMVISRMKM--VFNHLFCL 702 (759)
Q Consensus 684 ~~~~v~~~l~~--vF~~v~~~ 702 (759)
....+++.|+. .|.++-.+
T Consensus 205 Qv~~~~~~l~~~~~f~~i~~~ 225 (264)
T d1i9ga_ 205 QLSRIVEALRAKQCWTEPRAW 225 (264)
T ss_dssp HHHHHHHHHHHHSSBCCCEEE
T ss_pred hHHHHHHHHHHcCCeecceEE
Confidence 44556777753 37654443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=2.7e-09 Score=105.89 Aligned_cols=109 Identities=9% Similarity=0.199 Sum_probs=86.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
.+|++||.||.|.|..+.++...++ +.+|++||++|.+++.|++++ |+ .+++++++||+.+.+.+....
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl--~~~i~l~~Gd~~e~l~~l~~~----- 127 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL--QDKVTILNGASQDLIPQLKKK----- 127 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHGGGHHHH-----
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC--Cccceeeeccccccccchhhc-----
Confidence 4778999999999999999988875 569999999999999999887 66 578999999999998776521
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
.....||+|++|.+... ......+..+.++|+|||++++.
T Consensus 128 ----------------------~~~~~~D~ifiD~~~~~-----------~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 128 ----------------------YDVDTLDMVFLDHWKDR-----------YLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp ----------------------SCCCCEEEEEECSCGGG-----------HHHHHHHHHHTTCEEEEEEEEES
T ss_pred ----------------------ccccccceeeecccccc-----------cccHHHHHHHhCccCCCcEEEEe
Confidence 12367999999864331 11233466677899999999873
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.81 E-value=5.4e-09 Score=108.77 Aligned_cols=120 Identities=18% Similarity=0.091 Sum_probs=90.2
Q ss_pred cccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004354 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (759)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~---~~i~f~~ 122 (759)
+|.+....+..+..++.. ..++.+|||++||+|.++..++..|. +||+||.|+.+++.|++++..++ .+++|++
T Consensus 112 ~f~dqr~nr~~~~~~~~~--~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~ 188 (309)
T d2igta1 112 VFPEQIVHWEWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC 188 (309)
T ss_dssp CCGGGHHHHHHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC
T ss_pred cccchhHHHHHHHHHHhh--ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEe
Confidence 555555666666655532 13567999999999999999998887 59999999999999998875322 3589999
Q ss_pred eecccCC-------CcccEEEeCCCC--------h----hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 123 MDMTSMQ-------GGLDALMEPELG--------H----KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 123 ~D~~~~~-------gtfD~Ii~~~~~--------~----~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+|+.+.- .+||+|+++... . .....++..+.++|+|||.+++.+..
T Consensus 189 ~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 189 EDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp SCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 9997763 689999996421 1 12556777888999999986666543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.79 E-value=1.1e-08 Score=102.20 Aligned_cols=122 Identities=12% Similarity=0.152 Sum_probs=85.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|+|.++..|.... .+|++||+++.+++.|+++..-...+++.++.+|+.+. .
T Consensus 15 ~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~----~----------- 77 (234)
T d1xxla_ 15 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL----P----------- 77 (234)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC----C-----------
T ss_pred CCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccc----c-----------
Confidence 455799999999999999998875 58999999999999999987322235799999997542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC-CChhHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS-RSQATKD 686 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~-~~~~~~~ 686 (759)
..+.+||+|++ .....-+.. -..+|+.+++.|+|||.+++.... .......
T Consensus 78 ------------------~~~~~fD~v~~----~~~l~~~~d------~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~ 129 (234)
T d1xxla_ 78 ------------------FPDDSFDIITC----RYAAHHFSD------VRKAVREVARVLKQDGRFLLVDHYAPEDPVLD 129 (234)
T ss_dssp ------------------SCTTCEEEEEE----ESCGGGCSC------HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHH
T ss_pred ------------------ccccccceeee----eceeecccC------HHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHH
Confidence 12468999997 111111111 268999999999999988875333 2333333
Q ss_pred HHHHHHHH
Q 004354 687 MVISRMKM 694 (759)
Q Consensus 687 ~v~~~l~~ 694 (759)
.+...+..
T Consensus 130 ~~~~~~~~ 137 (234)
T d1xxla_ 130 EFVNHLNR 137 (234)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 34444433
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=6.2e-09 Score=104.79 Aligned_cols=104 Identities=11% Similarity=0.126 Sum_probs=81.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++.+|.+..+ .+|++||++|.+++.|++.. |+ +++++++.+|+.++. .
T Consensus 32 ~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl--~~~v~~~~~d~~~~~---~-------- 97 (245)
T d1nkva_ 32 KPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGV--SERVHFIHNDAAGYV---A-------- 97 (245)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCCTTCC---C--------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhc--cccchhhhhHHhhcc---c--------
Confidence 3457999999999999999988865 69999999999999999875 65 679999999976641 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
+.+||+|+. ......+ .. -..+|+.+++.|+|||.+++...
T Consensus 98 -----------------------~~~fD~v~~----~~~~~~~----~d--~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 98 -----------------------NEKCDVAAC----VGATWIA----GG--FAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp -----------------------SSCEEEEEE----ESCGGGT----SS--SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred -----------------------cCceeEEEE----Eehhhcc----CC--HHHHHHHHHHHcCcCcEEEEEec
Confidence 367999986 1111111 11 27899999999999999998753
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.78 E-value=1e-08 Score=105.51 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=80.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
++..+||.||+|.|.++.+|.+.+ ..+|++||++|.+++.|+++. |+ .++++++.+|+.+. .
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl--~~~v~~~~~d~~~l----~-------- 130 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGL--ADNITVKYGSFLEI----P-------- 130 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTC--TTTEEEEECCTTSC----S--------
T ss_pred CCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccc--cccccccccccccc----c--------
Confidence 556799999999999999998875 469999999999999999886 66 57899999997653 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
..+..||+|+. .....-+ | . -..+|+.+.+.|+|||.|++.-
T Consensus 131 ---------------------~~~~sfD~V~~----~~~l~h~--~--d--~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 131 ---------------------CEDNSYDFIWS----QDAFLHS--P--D--KLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp ---------------------SCTTCEEEEEE----ESCGGGC--S--C--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---------------------ccccccchhhc----cchhhhc--c--C--HHHHHHHHHHhcCCCcEEEEEE
Confidence 12467999986 1111111 1 1 2679999999999999988754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.75 E-value=1e-08 Score=102.27 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=83.3
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh----CC---CeEEEEeCCHHHHHHHHHHhcc------CCCC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----GF---HGITNVDFSKVVISDMLRRNVR------DRSD 117 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~----G~---~~VtgIDiS~~~I~~a~~r~~~------~~~~ 117 (759)
+.+...+.+++.. ...++.+|||||||+|.++..|+.. |. .+|+++|+++.+++.++++... ...+
T Consensus 64 P~~~a~~l~~L~~-~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~n 142 (223)
T d1r18a_ 64 PHMHAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ 142 (223)
T ss_dssp HHHHHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhhHHHHHHHHhh-ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccE
Confidence 4455556666521 1267899999999999999888764 32 2599999999999999876532 2357
Q ss_pred cEEEEeecccCC---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 118 MRWRVMDMTSMQ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 118 i~f~~~D~~~~~---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+.+.++|..+.. +.||+|++.......+ ..+.+.|+|||++++...
T Consensus 143 v~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p----~~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 143 LLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP----TELINQLASGGRLIVPVG 191 (223)
T ss_dssp EEEEESCGGGCCGGGCSEEEEEECSCBSSCC----HHHHHTEEEEEEEEEEES
T ss_pred EEEEecccccccccccceeeEEEEeechhch----HHHHHhcCCCcEEEEEEe
Confidence 999999987754 7999999977544333 345789999999988643
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.73 E-value=9.5e-09 Score=98.24 Aligned_cols=98 Identities=12% Similarity=0.091 Sum_probs=71.0
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------CcccEEEeCCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------GGLDALMEPEL 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------gtfD~Ii~~~~ 140 (759)
.+.+|||+|||+|.++..++.+|. +++++|.|+.+++.+++++.......++...|..... .+||+|++++.
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 577999999999999999989987 5999999999999999887654444455555543321 68999999753
Q ss_pred ChhHHHHHHHHH--HHhcccCcEEEEEE
Q 004354 141 GHKLGNQYLSEV--KRLLKSGGKFVCLT 166 (759)
Q Consensus 141 ~~~~~~~~l~ei--~rvLkpGG~liiit 166 (759)
........+.++ ..+|+|||.+++..
T Consensus 120 Y~~~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 120 YAMDLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp TTSCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred cccCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 221222223332 35799999887654
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=2.7e-08 Score=104.41 Aligned_cols=120 Identities=15% Similarity=0.193 Sum_probs=88.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcC----------C-CCCCCeEEEEccHHHHHHhh
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFG----------F-TQDKSLKVHITDGIKFVREM 595 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg----------l-~~~~rl~v~i~Da~~~l~~~ 595 (759)
....+||.+|.|.|+++.+|.... |..+|.++|+++++++.|++.+. + ...+++.++++|..++....
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~ 176 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 176 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc
Confidence 456799999999999999888765 67799999999999999998761 1 12468999999865443222
Q ss_pred cccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 596 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
. ...||+||+|+-++ .+++..+++.|+|||.|++
T Consensus 177 ~-------------------------------~~~fD~V~LD~p~P---------------~~~l~~~~~~LKpGG~lv~ 210 (324)
T d2b25a1 177 K-------------------------------SLTFDAVALDMLNP---------------HVTLPVFYPHLKHGGVCAV 210 (324)
T ss_dssp -----------------------------------EEEEEECSSST---------------TTTHHHHGGGEEEEEEEEE
T ss_pred C-------------------------------CCCcceEeecCcCH---------------HHHHHHHHHhccCCCEEEE
Confidence 2 35799999987332 2478999999999999998
Q ss_pred EecCCChhHHHHHHHHHHHh
Q 004354 676 NLVSRSQATKDMVISRMKMV 695 (759)
Q Consensus 676 N~~~~~~~~~~~v~~~l~~v 695 (759)
-+. +-+....+++.|+..
T Consensus 211 ~~P--~i~Qv~~~~~~l~~~ 228 (324)
T d2b25a1 211 YVV--NITQVIELLDGIRTC 228 (324)
T ss_dssp EES--SHHHHHHHHHHHHHH
T ss_pred EeC--CHHHHHHHHHHHHHc
Confidence 663 334445567777654
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.72 E-value=1.2e-08 Score=104.39 Aligned_cols=122 Identities=18% Similarity=0.254 Sum_probs=93.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.+|.|.|.++.+|.... |..+|+++|++|.+++.|++.+ |+ .+++.+..+|.... .
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~--~~~v~~~~~d~~~~---~-------- 168 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL--IERVTIKVRDISEG---F-------- 168 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC--GGGEEEECCCGGGC---C--------
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc--ccCcEEEecccccc---c--------
Confidence 456899999999999999998876 6779999999999999999987 54 57889988884221 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
....||.|++|+-++ .++++.+.+.|+|||.|++.+.+ -+
T Consensus 169 -----------------------~~~~~D~V~~d~p~p---------------~~~l~~~~~~LKpGG~lv~~~P~--~~ 208 (266)
T d1o54a_ 169 -----------------------DEKDVDALFLDVPDP---------------WNYIDKCWEALKGGGRFATVCPT--TN 208 (266)
T ss_dssp -----------------------SCCSEEEEEECCSCG---------------GGTHHHHHHHEEEEEEEEEEESS--HH
T ss_pred -----------------------cccceeeeEecCCCH---------------HHHHHHHHhhcCCCCEEEEEeCc--cc
Confidence 135699999987332 46899999999999999988754 34
Q ss_pred HHHHHHHHHHHh-cCceEEE
Q 004354 684 TKDMVISRMKMV-FNHLFCL 702 (759)
Q Consensus 684 ~~~~v~~~l~~v-F~~v~~~ 702 (759)
....+++.|++. |..+..+
T Consensus 209 Qv~~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 209 QVQETLKKLQELPFIRIEVW 228 (266)
T ss_dssp HHHHHHHHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHCCceeEEEE
Confidence 445667777764 6544333
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=4.6e-08 Score=100.20 Aligned_cols=147 Identities=15% Similarity=0.205 Sum_probs=104.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
..+.+||.+|.|+|+++..|....|..+|++||+++..+++|++.. ++ ++++++.+|..+.+ .
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~---~~v~~~~~d~~~~~---~-------- 172 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWFSAL---A-------- 172 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTTGGG---T--------
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc---ccceeeeccccccc---C--------
Confidence 4567899999999999999999999999999999999999999885 54 46999999955432 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCC---CCC----CCCCCCcCCCCCCh--------HHHHHHHHHccCc
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD---SPD----SSSGMTCPAADFVE--------GSFLLTVKDALSE 669 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~---s~d----~~~g~scPp~~f~~--------~~fl~~~~~~L~~ 669 (759)
+.+||+|+...- ..+ +..--..|...+.. ..++..+.+.|+|
T Consensus 173 -----------------------~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~ 229 (274)
T d2b3ta1 173 -----------------------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS 229 (274)
T ss_dssp -----------------------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE
T ss_pred -----------------------CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC
Confidence 258999998531 111 00011234444442 3478888999999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHh-cCceEEEeecCCccEEEEE
Q 004354 670 QGLFIVNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFG 714 (759)
Q Consensus 670 ~Gilv~N~~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a 714 (759)
+|.+++-+-... .+.+.+.+.+. |..+..++--.+.+++++|
T Consensus 230 ~G~l~lEig~~q---~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~ 272 (274)
T d2b3ta1 230 GGFLLLEHGWQQ---GEAVRQAFILAGYHDVETCRDYGDNERVTLG 272 (274)
T ss_dssp EEEEEEECCSSC---HHHHHHHHHHTTCTTCCEEECTTSSEEEEEE
T ss_pred CCEEEEEECchH---HHHHHHHHHHCCCCeEEEEECCCCCceEEEE
Confidence 999999764322 23455555544 8777666644567778776
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.69 E-value=2.5e-08 Score=98.72 Aligned_cols=103 Identities=14% Similarity=0.209 Sum_probs=77.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|+|.++..|.... .+|++||+++.+++.|++.+.-...++++++++|+.+. .
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l----~----------- 76 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM----P----------- 76 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC----C-----------
T ss_pred CCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccc----c-----------
Confidence 456799999999999998888774 48999999999999999886322347899999997553 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC-hHHHHHHHHHccCcCcEEEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~-~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+..||+|+.- ... .++- -..+|..+.+.|+|||.|++.
T Consensus 77 ------------------~~~~~fD~v~~~----~~l-------~~~~d~~~~l~~~~r~LkpgG~l~i~ 117 (231)
T d1vl5a_ 77 ------------------FTDERFHIVTCR----IAA-------HHFPNPASFVSEAYRVLKKGGQLLLV 117 (231)
T ss_dssp ------------------SCTTCEEEEEEE----SCG-------GGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------------cccccccccccc----ccc-------cccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 124689999972 111 1111 257999999999999988874
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.67 E-value=5.7e-08 Score=98.57 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=92.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.+|+|+|.++..+... ..+|++||+||.+++.|++.... .+-+.+++.+|..+.+.
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~-n~~~~~~~~~d~~~~~~-------------- 181 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKR-NGVRPRFLEGSLEAALP-------------- 181 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHH-TTCCCEEEESCHHHHGG--------------
T ss_pred CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHH-cCCceeEEecccccccc--------------
Confidence 34579999999999999888765 35899999999999999987632 12246789999766432
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
..+||+|+..+... .-.+++..+++.|+|||.|++.=+-.. ..+.
T Consensus 182 --------------------~~~fD~V~ani~~~-------------~l~~l~~~~~~~LkpGG~lilSgil~~--~~~~ 226 (254)
T d2nxca1 182 --------------------FGPFDLLVANLYAE-------------LHAALAPRYREALVPGGRALLTGILKD--RAPL 226 (254)
T ss_dssp --------------------GCCEEEEEEECCHH-------------HHHHHHHHHHHHEEEEEEEEEEEEEGG--GHHH
T ss_pred --------------------ccccchhhhccccc-------------cHHHHHHHHHHhcCCCcEEEEEecchh--hHHH
Confidence 25799999854221 125788999999999999998622222 2345
Q ss_pred HHHHHHHh-cCceEEEeecCCccEEEEEec
Q 004354 688 VISRMKMV-FNHLFCLQLEEDVNLVLFGLS 716 (759)
Q Consensus 688 v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~~ 716 (759)
+.+.+++. |..+... ...+++.+.++
T Consensus 227 v~~~~~~~Gf~~~~~~---~~~~Wv~l~~~ 253 (254)
T d2nxca1 227 VREAMAGAGFRPLEEA---AEGEWVLLAYG 253 (254)
T ss_dssp HHHHHHHTTCEEEEEE---EETTEEEEEEE
T ss_pred HHHHHHHCCCEEEEEE---EECCEEEEEEe
Confidence 66666655 4433322 23457766543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.66 E-value=5e-08 Score=95.80 Aligned_cols=129 Identities=17% Similarity=0.229 Sum_probs=96.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
..+-||.||+|.|.....+...+|+..+.+||+.+.++..|.+.. ++ ++++++.+||.++.....
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l---~Ni~~~~~da~~l~~~~~--------- 98 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV---PNIKLLWVDGSDLTDYFE--------- 98 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---SSEEEEECCSSCGGGTSC---------
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc---ccceeeecCHHHHhhhcc---------
Confidence 346799999999999999999999999999999999999987765 54 579999999988654333
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHH
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 685 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~ 685 (759)
...+|.|++ .-+|+..-..-.-..+++.+||+.+.+.|+|||.|.+ .+.+..+.
T Consensus 99 ----------------------~~~~~~i~i--~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i--~TD~~~Y~ 152 (204)
T d1yzha1 99 ----------------------DGEIDRLYL--NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF--KTDNRGLF 152 (204)
T ss_dssp ----------------------TTCCSEEEE--ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE--EESCHHHH
T ss_pred ----------------------CCceehhcc--cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE--EECCccHH
Confidence 356888887 3344321110012347889999999999999999874 34566666
Q ss_pred HHHHHHHHHh
Q 004354 686 DMVISRMKMV 695 (759)
Q Consensus 686 ~~v~~~l~~v 695 (759)
+.++..+...
T Consensus 153 ~~~le~~~~~ 162 (204)
T d1yzha1 153 EYSLVSFSQY 162 (204)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
Confidence 6666666554
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=4.2e-08 Score=94.61 Aligned_cols=100 Identities=11% Similarity=0.018 Sum_probs=80.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC----CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ----GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~----gtfD~Ii~~~~~~ 142 (759)
.+.+|||++||+|.++...+.+|+..|+.||.++.+++.+++++... ..+..++..|+.++. ..||+|++++...
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 45799999999999999999999999999999999999999887543 357888999987653 7899999976422
Q ss_pred -hHHHHHHHHHHH--hcccCcEEEEEEc
Q 004354 143 -KLGNQYLSEVKR--LLKSGGKFVCLTL 167 (759)
Q Consensus 143 -~~~~~~l~ei~r--vLkpGG~liiit~ 167 (759)
......+..+.+ +|+++|.+++.+.
T Consensus 123 ~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 123 RGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 235666766655 6999998888653
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.63 E-value=1.6e-07 Score=97.52 Aligned_cols=115 Identities=14% Similarity=0.204 Sum_probs=84.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
.+..+||.++.|+|++...+... ..+|+.||+++..++.|++++ |+ .+.+++++.+|+.+|+++...
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~-~~~~~~~i~~D~~~~l~~~~~------- 200 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGL-EQAPIRWICEDAMKFIQREER------- 200 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTC-TTSCEEEECSCHHHHHHHHHH-------
T ss_pred cCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcc-cCCcEEEEeCCHHHhHHHHhh-------
Confidence 45689999999999988877765 458999999999999999988 55 345799999999999987652
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCC-CCC----hHHHHHHHHHccCcCcE-EEEEec
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA-DFV----EGSFLLTVKDALSEQGL-FIVNLV 678 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~-~f~----~~~fl~~~~~~L~~~Gi-lv~N~~ 678 (759)
.+.+||+||+|.-.-- -. +.. .+- -...+..++.+|+|+|. ++++..
T Consensus 201 ----------------------~~~~fD~IilDPP~f~----~~-~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 201 ----------------------RGSTYDIILTDPPKFG----RG-THGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp ----------------------HTCCBSEEEECCCSEE----EC-TTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ----------------------cCCCCCEEEECCCccc----cc-ccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 1478999999853210 00 011 111 23466778899999885 556654
Q ss_pred C
Q 004354 679 S 679 (759)
Q Consensus 679 ~ 679 (759)
+
T Consensus 254 s 254 (309)
T d2igta1 254 S 254 (309)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=98.63 E-value=3.8e-08 Score=97.53 Aligned_cols=106 Identities=12% Similarity=0.240 Sum_probs=78.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC--CCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~--p~~~i~~VEiDp~v~~vA~~~F-gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
+...+||.||+|+|.++..|.+.. |..+|++||+++.|++.|++.. ......++.+..+|..++
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~------------- 104 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV------------- 104 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC-------------
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc-------------
Confidence 345689999999999998888764 6789999999999999999986 333466788888886543
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
....+|+|++- .. ..-+ ++.. -..+|+++++.|+|||.|++-
T Consensus 105 ----------------------~~~~~d~i~~~--~~--l~~~--~~~d--~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 105 ----------------------EIKNASMVILN--FT--LQFL--PPED--RIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp ----------------------CCCSEEEEEEE--SC--GGGS--CGGG--HHHHHHHHHHHEEEEEEEEEE
T ss_pred ----------------------ccccceeeEEe--ee--cccc--Chhh--HHHHHHHHHHhCCCCceeecc
Confidence 12568888761 11 0000 1111 247999999999999998875
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.62 E-value=3.1e-08 Score=99.36 Aligned_cols=108 Identities=17% Similarity=0.200 Sum_probs=79.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.++.+||.||+|+|.++..|.+.. .+|++||+++.|++.|++.+.. ...+++++.+|+.++ .
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~-~~~~i~~~~~d~~~l----~----------- 101 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKE-RNLKIEFLQGDVLEI----A----------- 101 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-TTCCCEEEESCGGGC----C-----------
T ss_pred CCCCEEEEeCCCCCccchhhcccc--eEEEEEeecccccccccccccc-ccccchheehhhhhc----c-----------
Confidence 456789999999999988888763 5899999999999999998742 234799999997654 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
...+||+|++ ..+. ..-+ +++. -..+|+.+++.|+|||+|++-+.+
T Consensus 102 -------------------~~~~fD~I~~-~~~~--~~~~--~~~~--~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 102 -------------------FKNEFDAVTM-FFST--IMYF--DEED--LRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp -------------------CCSCEEEEEE-CSSG--GGGS--CHHH--HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -------------------cccccchHhh-hhhh--hhcC--ChHH--HHHHHHHHHHHcCCCcEEEEEecc
Confidence 1257999998 1111 0000 0011 146999999999999999987643
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.62 E-value=1.4e-08 Score=101.98 Aligned_cols=105 Identities=22% Similarity=0.228 Sum_probs=79.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+.+||.||+|+|.++..|.+.. .+|++||+++.|++.|++...- ...+++++.+|+.++ .
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~-~~~~v~~~~~d~~~~----~----------- 97 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRS-QGLKPRLACQDISNL----N----------- 97 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHH-TTCCCEEECCCGGGC----C-----------
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccc-cCccceeeccchhhh----c-----------
Confidence 456799999999999999888874 4899999999999999988732 234699999998664 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC----hHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV----EGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~----~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
...+||+|++ +++. -..+. -..+|+.+++.|+|||+|++.+..
T Consensus 98 -------------------~~~~fD~i~~-~~~~---------~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 98 -------------------INRKFDLITC-CLDS---------TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp -------------------CSCCEEEEEE-CTTG---------GGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred -------------------ccccccccce-eeee---------eeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 1257999987 1110 11122 135899999999999999988753
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=3.9e-08 Score=97.34 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=78.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|.++..|....+ .+|++||+++.+++.|++.+.....++++++.+|+.++. .
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~--~------------ 123 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT--P------------ 123 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC--C------------
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccc--c------------
Confidence 4567899999999999887765544 389999999999999999986443457899999987751 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~ 675 (759)
...+||+|+. ... + .++-+ .++|..+++.|+|+|.|++
T Consensus 124 -------------------~~~~fD~I~~----~~~---l----~h~~~~~~~~~l~~i~~~Lk~~G~~~i 164 (222)
T d2ex4a1 124 -------------------EPDSYDVIWI----QWV---I----GHLTDQHLAEFLRRCKGSLRPNGIIVI 164 (222)
T ss_dssp -------------------CSSCEEEEEE----ESC---G----GGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------cccccccccc----ccc---c----ccchhhhhhhHHHHHHHhcCCcceEEE
Confidence 1368999997 111 1 12222 3699999999999998876
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.61 E-value=5.2e-08 Score=91.03 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=79.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.+|.|+|++...+...-. .+|++||+|+..++.+++.+-. ...++++++.+|+.+++....
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~----------- 81 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT----------- 81 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC-----------
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccc-----------
Confidence 457999999999999876655533 4999999999999999999722 235789999999999987643
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCC-CCCChHHHHHHHHH--ccCcCcEEEEEe
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA-ADFVEGSFLLTVKD--ALSEQGLFIVNL 677 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp-~~f~~~~fl~~~~~--~L~~~Gilv~N~ 677 (759)
.+||+|++|. | ..-.....+..+.. .|+|+|++++-.
T Consensus 82 ---------------------~~fDiIf~DP------------Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 82 ---------------------GRFDLVFLDP------------PYAKETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp ---------------------SCEEEEEECC------------SSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ---------------------cccceeEech------------hhccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 6799999963 2 11122456666653 589999998753
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.60 E-value=1.3e-07 Score=99.45 Aligned_cols=113 Identities=9% Similarity=0.120 Sum_probs=85.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.+|.|+|+.+.++.... ..+|++||+++..++.|++.+ |+ +++++++.+|+.+++.....
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ngl--~~~~~~~~~d~~~~~~~~~~-------- 213 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGV--EDRMKFIVGSAFEEMEKLQK-------- 213 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHH--------
T ss_pred CCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcCC--CccceeeechhhhhhHHHHh--------
Confidence 34799999999999998877663 348999999999999999987 55 46899999999999987652
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC-----hHHHHHHHHHccCcCcEEEEEecC
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~-----~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
.+.+||+||+|.-..-.. ..... -.+++..+.++|+|||+|++-..+
T Consensus 214 ---------------------~~~~fD~Vi~DpP~~~~~------~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 214 ---------------------KGEKFDIVVLDPPAFVQH------EKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp ---------------------TTCCEEEEEECCCCSCSS------GGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred ---------------------ccCCCCchhcCCccccCC------HHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 247899999986432110 11111 245788888999999998875433
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.60 E-value=1.3e-07 Score=94.15 Aligned_cols=145 Identities=17% Similarity=0.164 Sum_probs=101.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||.|.|.++..|.... |..+|.+||++|.+++.|++...- .+.+..+..|+...- ...
T Consensus 72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~--~~~~~~i~~d~~~~~-~~~---------- 138 (227)
T d1g8aa_ 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--RRNIVPILGDATKPE-EYR---------- 138 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--CTTEEEEECCTTCGG-GGT----------
T ss_pred CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh--cCCceEEEEECCCcc-ccc----------
Confidence 455799999999999999999986 667999999999999999988642 356788888865421 111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC-----
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS----- 681 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~----- 681 (759)
.....+|+|+.|+...+ ....++..+++.|+|||.+++-+.+++
T Consensus 139 -------------------~~~~~vD~i~~d~~~~~------------~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~ 187 (227)
T d1g8aa_ 139 -------------------ALVPKVDVIFEDVAQPT------------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTK 187 (227)
T ss_dssp -------------------TTCCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTS
T ss_pred -------------------ccccceEEEEEEccccc------------hHHHHHHHHHHhcccCCeEEEEEECCccCCCC
Confidence 11357999999874432 236799999999999999988654331
Q ss_pred --hhHHHHHHHHHHHhcCceEEEeec--CCccEEEEEec
Q 004354 682 --QATKDMVISRMKMVFNHLFCLQLE--EDVNLVLFGLS 716 (759)
Q Consensus 682 --~~~~~~v~~~l~~vF~~v~~~~~~--~~~N~Vl~a~~ 716 (759)
......+...+.+-|.-+-.+.+. +....+++|.+
T Consensus 188 ~~~~v~~~v~~l~~~gf~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 188 EPEQVFREVERELSEYFEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEECTTTSSSEEEEEEEC
T ss_pred CHHHHHHHHHHHHHcCCEEEEEEcCCCCCCceEEEEEEe
Confidence 233444455556667655444433 23455666654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.60 E-value=8.7e-08 Score=94.40 Aligned_cols=143 Identities=14% Similarity=0.105 Sum_probs=102.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|+|.++.+|....|..+|++||++|.+++.|++...- .+++.++++|+...-..
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~--~~ni~~i~~d~~~~~~~------------- 119 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--RNNIIPLLFDASKPWKY------------- 119 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--CSSEEEECSCTTCGGGT-------------
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc--cCCceEEEeeccCcccc-------------
Confidence 455799999999999999999999988999999999999999887632 35789999986543111
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC-------
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR------- 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~------- 680 (759)
......+|+|+.|+...+ ....++.++.+.|+|||.+++-...+
T Consensus 120 -----------------~~~~~~vd~v~~~~~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~ 170 (209)
T d1nt2a_ 120 -----------------SGIVEKVDLIYQDIAQKN------------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAE 170 (209)
T ss_dssp -----------------TTTCCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSC
T ss_pred -----------------ccccceEEEEEecccChh------------hHHHHHHHHHHHhccCCeEEEEEEccccCCCCC
Confidence 111356888888763322 23679999999999999998765432
Q ss_pred ChhHHHHHHHHHHHhcCceEEEeecC-CccEEEEE
Q 004354 681 SQATKDMVISRMKMVFNHLFCLQLEE-DVNLVLFG 714 (759)
Q Consensus 681 ~~~~~~~v~~~l~~vF~~v~~~~~~~-~~N~Vl~a 714 (759)
.....+.+...+.+-|.-+-.+..+. +.+.++|.
T Consensus 171 ~~~~~~~~~~~l~~gf~i~E~i~L~P~~~~H~~v~ 205 (209)
T d1nt2a_ 171 PEEVFKSVLKEMEGDFKIVKHGSLMPYHRDHIFIH 205 (209)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEECTTTCTTEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEEccCCCccCcEEEE
Confidence 12345666777777787655555432 23444443
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.60 E-value=1.8e-07 Score=93.52 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=100.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||+|.|..+..|....|...|.+||++|.+++.|++.-. ..+++..+++|+........
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~--~~~ni~~i~~d~~~~~~~~~----------- 139 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA--ERENIIPILGDANKPQEYAN----------- 139 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT--TCTTEEEEECCTTCGGGGTT-----------
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHh--hhcccceEEEeeccCccccc-----------
Confidence 45579999999999999999999898899999999999999988753 35678889998766432211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCC------
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS------ 681 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~------ 681 (759)
....+|+|+.|+...+ -...++.++++.|+|||.+++-+..+.
T Consensus 140 -------------------~~~~v~~i~~~~~~~~------------~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~ 188 (230)
T d1g8sa_ 140 -------------------IVEKVDVIYEDVAQPN------------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD 188 (230)
T ss_dssp -------------------TCCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC
T ss_pred -------------------ccceeEEeeccccchH------------HHHHHHHHHHHhcccCceEEEEeeccccCCCCC
Confidence 1234666766554321 126789999999999998887653321
Q ss_pred -hhHHHHHHHHHHHh-cCceEEEeec--CCccEEEEEe
Q 004354 682 -QATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGL 715 (759)
Q Consensus 682 -~~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~Vl~a~ 715 (759)
....+.+.+.|++. |.-+-.+... +....+++|.
T Consensus 189 ~~~~~~e~~~~L~~aGF~ive~idL~py~~~H~~vvg~ 226 (230)
T d1g8sa_ 189 PKEIFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp HHHHHHHHHHHHHHHTEEEEEEEECTTTSTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCCCcCCeEEEEEE
Confidence 23345566777665 7655555543 2235566654
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.55 E-value=5.1e-08 Score=99.65 Aligned_cols=111 Identities=10% Similarity=-0.002 Sum_probs=79.6
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC----CcccEEEeCCC-
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ----GGLDALMEPEL- 140 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~----gtfD~Ii~~~~- 140 (759)
+..+|||+|||+|..+..++...-.+|+++|+|+.+++.|++++.... ..+.+...|+.+.. +.||+|++++.
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPY 189 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY 189 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccc
Confidence 456899999999999999887755579999999999999999876543 35677788877654 78999999751
Q ss_pred -------------ChhH--------HHHHHHHHHHhcccCcEEEEEE-cCchhhhhhhcc
Q 004354 141 -------------GHKL--------GNQYLSEVKRLLKSGGKFVCLT-LAESHVLGLLFP 178 (759)
Q Consensus 141 -------------~~~~--------~~~~l~ei~rvLkpGG~liiit-~~~~~~~~~l~~ 178 (759)
.+.. ..-+-+-+.+.|+|||.+++.. +.|......++.
T Consensus 190 I~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v~~l~~ 249 (271)
T d1nv8a_ 190 VKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVS 249 (271)
T ss_dssp BCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTST
T ss_pred cCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHH
Confidence 0000 1222223567899999887754 445555555544
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.55 E-value=1.1e-07 Score=91.49 Aligned_cols=112 Identities=15% Similarity=0.128 Sum_probs=84.9
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc--CCCCcEEEEeecccCC-
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR--DRSDMRWRVMDMTSMQ- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~--~~~~i~f~~~D~~~~~- 129 (759)
++..+-..+.. ...+.+|||++||+|.++...+.+|...|+++|.++.+++.+++++.. ...+++++++|+.+.-
T Consensus 28 vrealFn~l~~--~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~ 105 (182)
T d2fhpa1 28 VKESIFNMIGP--YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE 105 (182)
T ss_dssp HHHHHHHHHCS--CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHHHHHH--hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhh
Confidence 44444444432 135789999999999999999999999999999999999999887643 2236899999987642
Q ss_pred ------CcccEEEeCCCChh-HHHHHHHHHHH--hcccCcEEEEEE
Q 004354 130 ------GGLDALMEPELGHK-LGNQYLSEVKR--LLKSGGKFVCLT 166 (759)
Q Consensus 130 ------gtfD~Ii~~~~~~~-~~~~~l~ei~r--vLkpGG~liiit 166 (759)
..||+|++.+.... .....+..+.. +|+++|.+++.+
T Consensus 106 ~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 106 QFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp HHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 57999999764322 25667777754 699999887654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.54 E-value=7.2e-08 Score=94.52 Aligned_cols=107 Identities=19% Similarity=0.298 Sum_probs=78.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
+..+||.||+|+|.++..|.+. +.+|+++|+++.+++.|++.+.- ....+.++.+|+.+. .
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~-~~~~~~~~~~d~~~l----~------------ 97 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKS-RESNVEFIVGDARKL----S------------ 97 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH-TTCCCEEEECCTTSC----C------------
T ss_pred CCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhcc-ccccccccccccccc----c------------
Confidence 4469999999999999999875 46999999999999999988732 134678888887653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
..+..||+|+. .....-+ |+.. -..+|+.+.+.|+|||.|++-...
T Consensus 98 -----------------~~~~~fD~I~~----~~~l~~~--~~~d--~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 98 -----------------FEDKTFDYVIF----IDSIVHF--EPLE--LNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp -----------------SCTTCEEEEEE----ESCGGGC--CHHH--HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----------------ccCcCceEEEE----ecchhhC--ChhH--HHHHHHHHHHHcCcCcEEEEEEcC
Confidence 12467999997 1111111 1111 135899999999999999887643
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.54 E-value=5.3e-07 Score=94.45 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=99.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHh----CC--CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--CcccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA----GF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--GGLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~----G~--~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--gtfD~Ii~~ 138 (759)
.++.+|||.|||+|.++..+++. +. .+++|+|+++.++..|+.++........+.+.|..... ..||+|+++
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N 195 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 195 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence 56779999999999999887653 22 25999999999999888776555667788888865544 889999997
Q ss_pred CCCh--------------------hHHHHHHHHHHHhcccCcEEEEEEcCc-------hhhhhhhccccCCCceEEEEEe
Q 004354 139 ELGH--------------------KLGNQYLSEVKRLLKSGGKFVCLTLAE-------SHVLGLLFPKFRFGWKMSVHAI 191 (759)
Q Consensus 139 ~~~~--------------------~~~~~~l~ei~rvLkpGG~liiit~~~-------~~~~~~l~~~~~~~w~v~~~~~ 191 (759)
+... .....++..+.+.|+|||+++++.... ..+++.++.. .+...+..+
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~---~~i~~ii~l 272 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKN---GHIEGIIKL 272 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHH---EEEEEEEEC
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhC---CcEEEEEEC
Confidence 5210 013447899999999999988876421 1233333333 244445555
Q ss_pred CCCCCCCCCceEEEEEEEeCCC
Q 004354 192 PQKSSSEPSLQTFMVVADKENS 213 (759)
Q Consensus 192 ~~~~~~~~~~~~f~~v~~K~~~ 213 (759)
+..--...+....+++++|.+.
T Consensus 273 p~~~F~~~~~~t~ilvl~K~~~ 294 (328)
T d2f8la1 273 PETLFKSEQARKSILILEKADV 294 (328)
T ss_dssp CGGGSCC-CCCEEEEEEEECCT
T ss_pred CccccCCCCCCeEEEEEECCCC
Confidence 5422235677888999998754
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.52 E-value=1.1e-07 Score=96.25 Aligned_cols=100 Identities=17% Similarity=0.283 Sum_probs=78.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.+...|.+.+|..+++++|+ |.+++.|++++ |+ .+|++++.+|..+. .
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~rv~~~~~D~~~~---~--------- 143 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL--SDRVDVVEGDFFEP---L--------- 143 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC--TTTEEEEECCTTSC---C---------
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc--ccchhhccccchhh---c---------
Confidence 5668999999999999999999999999999998 78999999887 44 57999999995431 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~N 676 (759)
...||+|++ ... -.++-+ ..+|+++++.|+|||.|++.
T Consensus 144 -----------------------~~~~D~v~~----~~v-------lh~~~d~~~~~~L~~~~~~LkPGG~l~i~ 184 (253)
T d1tw3a2 144 -----------------------PRKADAIIL----SFV-------LLNWPDHDAVRILTRCAEALEPGGRILIH 184 (253)
T ss_dssp -----------------------SSCEEEEEE----ESC-------GGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred -----------------------ccchhheee----ccc-------cccCCchhhHHHHHHHHHhcCCCcEEEEE
Confidence 246999987 111 111222 36799999999999977764
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.3e-07 Score=94.10 Aligned_cols=121 Identities=14% Similarity=0.160 Sum_probs=84.7
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc---CCC
Q 004354 501 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFT 576 (759)
Q Consensus 501 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~F---gl~ 576 (759)
++..|+..+.+.-+.. .. .....+||.||.|+|.++..|.+. .|..+|++||+++++++.|++.+ ++.
T Consensus 56 ~is~P~~~a~~le~L~-~~-------l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~ 127 (224)
T d1i1na_ 56 TISAPHMHAYALELLF-DQ-------LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT 127 (224)
T ss_dssp EECCHHHHHHHHHHTT-TT-------SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH
T ss_pred hhhhhHHHHHHHHHHh-hc-------cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcc
Confidence 5666776655533211 10 134569999999999888888775 45679999999999999999887 221
Q ss_pred --CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC
Q 004354 577 --QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF 654 (759)
Q Consensus 577 --~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f 654 (759)
...+++++.+||.+-... ...||+|+++..... .|
T Consensus 128 ~~~~~~~~~~~gD~~~~~~~---------------------------------~~~fD~I~~~~~~~~-------ip--- 164 (224)
T d1i1na_ 128 LLSSGRVQLVVGDGRMGYAE---------------------------------EAPYDAIHVGAAAPV-------VP--- 164 (224)
T ss_dssp HHHTSSEEEEESCGGGCCGG---------------------------------GCCEEEEEECSBBSS-------CC---
T ss_pred cccccceEEEEeecccccch---------------------------------hhhhhhhhhhcchhh-------cC---
Confidence 236799999998653221 257999999643221 11
Q ss_pred ChHHHHHHHHHccCcCcEEEEEec
Q 004354 655 VEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 655 ~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
+.+.+.|+|||.||+-+.
T Consensus 165 ------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 165 ------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp ------HHHHHTEEEEEEEEEEES
T ss_pred ------HHHHhhcCCCcEEEEEEc
Confidence 346688999999998764
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.51 E-value=1.1e-07 Score=96.43 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=77.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.+|+|.|.++..|..... .+|++||+++.+++.|++.+. ..++++++++|..++ .
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~----~----------- 153 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETA----T----------- 153 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGC----C-----------
T ss_pred CCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhcccc--ccccceeEEcccccc----c-----------
Confidence 5667999999999988876554433 389999999999999999985 346789999997654 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEE
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~ 675 (759)
..+.+||+|++ ... -.++-+ ..||+.|++.|+|||.|++
T Consensus 154 ------------------~~~~~fD~I~~----~~v-------l~hl~d~d~~~~l~~~~~~LkpgG~iii 195 (254)
T d1xtpa_ 154 ------------------LPPNTYDLIVI----QWT-------AIYLTDADFVKFFKHCQQALTPNGYIFF 195 (254)
T ss_dssp ------------------CCSSCEEEEEE----ESC-------GGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------------cCCCccceEEe----ecc-------ccccchhhhHHHHHHHHHhcCCCcEEEE
Confidence 12468999998 111 122332 3789999999999999988
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.50 E-value=7.4e-08 Score=95.16 Aligned_cols=101 Identities=20% Similarity=0.188 Sum_probs=76.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||+|+|.++..|.+.. +..+|+++|+++.+++.|++.+.-..-+++.++++|+.+....
T Consensus 74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~------------ 141 (213)
T d1dl5a1 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE------------ 141 (213)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG------------
T ss_pred cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc------------
Confidence 456799999999999998888765 5679999999999999999988433346788999997653221
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
...||+|+++..-. ++ .+.+.+.|+|||.|++-+
T Consensus 142 ---------------------~~~fD~I~~~~~~~-----------~~-----p~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 142 ---------------------FSPYDVIFVTVGVD-----------EV-----PETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp ---------------------GCCEEEEEECSBBS-----------CC-----CHHHHHHEEEEEEEEEEB
T ss_pred ---------------------ccchhhhhhhccHH-----------Hh-----HHHHHHhcCCCcEEEEEE
Confidence 25799999954211 11 134567799999998754
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.50 E-value=2e-07 Score=90.58 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=68.2
Q ss_pred CCCCeEEEECCCcchhH----HHHHHh----CCC-eEEEEeCCHHHHHHHHHHhc------------------cCC----
Q 004354 67 SPPPQILVPGCGNSRLS----EHLYDA----GFH-GITNVDFSKVVISDMLRRNV------------------RDR---- 115 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls----~~L~~~----G~~-~VtgIDiS~~~I~~a~~r~~------------------~~~---- 115 (759)
.+..+|+.+|||+|.-. ..+.+. +.. +|+|+|+|+.+++.|++-.. +..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 35679999999999944 333332 111 59999999999998874320 000
Q ss_pred ----------CCcEEEEeecccCC----CcccEEEeCCCCh----hHHHHHHHHHHHhcccCcEEEEE
Q 004354 116 ----------SDMRWRVMDMTSMQ----GGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCL 165 (759)
Q Consensus 116 ----------~~i~f~~~D~~~~~----gtfD~Ii~~~~~~----~~~~~~l~ei~rvLkpGG~liii 165 (759)
..+.+...+..... +.||+|+|-+... ....++++.+++.|+|||.|++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 12344555544432 7899999987543 34789999999999999987644
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.49 E-value=1.2e-07 Score=92.00 Aligned_cols=108 Identities=11% Similarity=0.107 Sum_probs=79.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.||+|.|..+.+|.+.. .+|++||+++.+++.|++...-..-+++.+.++|..+..
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~---------------- 91 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT---------------- 91 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC----------------
T ss_pred CCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc----------------
Confidence 45699999999999999998873 589999999999999998874323357899999855431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
....||+|+.-. ... ..|+.. -..+|+.+.+.|+|||++++.....
T Consensus 92 ------------------~~~~fD~I~~~~----~~~--~~~~~~--~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 92 ------------------FDGEYDFILSTV----VMM--FLEAQT--IPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp ------------------CCCCEEEEEEES----CGG--GSCTTH--HHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred ------------------ccccccEEEEee----eee--cCCHHH--HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 136799999721 111 112222 2569999999999999988865443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.47 E-value=5.5e-07 Score=94.07 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=92.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+||.+..|+|+.+..+... ....|++||+++..++.|++.+ |+ ...+++++.+|+.+|++....
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l-~~~~~~~i~~d~~~~l~~~~~-------- 213 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHL-DMANHQLVVMDVFDYFKYARR-------- 213 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTC-CCTTEEEEESCHHHHHHHHHH--------
T ss_pred CCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcc-cCcceEEEEccHHHHHHHHHh--------
Confidence 3479999999999998766554 3348999999999999999998 54 346899999999999988652
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC-----hHHHHHHHHHccCcCcEEEEEecCC
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~-----~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.+.+||+||+|..+-..+ +.... -.+.++.+.++|+|||+|++-.-+.
T Consensus 214 ---------------------~~~~fD~Ii~DPP~f~~~------~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 214 ---------------------HHLTYDIIIIDPPSFARN------KKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp ---------------------TTCCEEEEEECCCCC-----------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ---------------------hcCCCCEEEEcChhhccc------hhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 246899999986432110 11111 2357888899999999999755333
Q ss_pred ChhHHHHHHHHHHHhcC
Q 004354 681 SQATKDMVISRMKMVFN 697 (759)
Q Consensus 681 ~~~~~~~v~~~l~~vF~ 697 (759)
.- ..+.+...+.+.|.
T Consensus 267 ~~-~~~~f~~~v~~a~~ 282 (317)
T d2b78a2 267 NM-TVSQFKKQIEKGFG 282 (317)
T ss_dssp TS-CHHHHHHHHHHHHT
T ss_pred cC-CHHHHHHHHHHHHH
Confidence 22 12334455555554
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.47 E-value=8.6e-08 Score=98.59 Aligned_cols=104 Identities=22% Similarity=0.247 Sum_probs=79.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
.++.+||.||+|.|.++..|...+|. .+|++||+++.+++.|++.+.-. ..+++++.+|+.++ .
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-~~~~~f~~~d~~~~----~---------- 90 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-PYDSEFLEGDATEI----E---------- 90 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS-SSEEEEEESCTTTC----C----------
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc-cccccccccccccc----c----------
Confidence 57789999999999999999998874 68999999999999999988432 23688899986542 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
. ..+||+|+.- ....-+.. -..+|+.+.+.|+|||.+++-
T Consensus 91 -------------------~-~~~fD~v~~~----~~l~~~~d------~~~~l~~~~~~LkpgG~lii~ 130 (281)
T d2gh1a1 91 -------------------L-NDKYDIAICH----AFLLHMTT------PETMLQKMIHSVKKGGKIICF 130 (281)
T ss_dssp -------------------C-SSCEEEEEEE----SCGGGCSS------HHHHHHHHHHTEEEEEEEEEE
T ss_pred -------------------c-cCCceEEEEe----hhhhcCCC------HHHHHHHHHHHcCcCcEEEEE
Confidence 0 2469999972 11111211 257999999999999988864
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=1.5e-07 Score=96.13 Aligned_cols=98 Identities=12% Similarity=0.223 Sum_probs=79.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.++.+||.||.|.|.+...|.+.+|+.++++||+++.+++.|++.. ++++++++|+.+. .
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~~~~~~~~d~~~l----~----------- 142 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRL----P----------- 142 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSC----S-----------
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----ccccceeeehhhc----c-----------
Confidence 5678999999999999999999999999999999999999999874 4689999997543 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
..+..||+|+. +++ |. .++.+.+.|+|||.|++.....
T Consensus 143 ------------------~~~~sfD~v~~-~~~----------~~------~~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 143 ------------------FSDTSMDAIIR-IYA----------PC------KAEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp ------------------BCTTCEEEEEE-ESC----------CC------CHHHHHHHEEEEEEEEEEEECT
T ss_pred ------------------CCCCCEEEEee-cCC----------HH------HHHHHHHHhCCCcEEEEEeeCC
Confidence 12467999996 111 11 2577899999999999887544
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.45 E-value=2e-07 Score=89.09 Aligned_cols=111 Identities=8% Similarity=-0.032 Sum_probs=77.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeEEEEccHHHHHHhh
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREM 595 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~------------~~~rl~v~i~Da~~~l~~~ 595 (759)
.+..+||+||+|.|..+.+|.+. +.+|++||+++.+++.|++..+-. ....++++.+|..+.-...
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 45679999999999999999987 469999999999999999986431 1244566777655432221
Q ss_pred cccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 596 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
...||+|+. ... +.+.+. -....+++.+.+.|+|||.+++
T Consensus 97 --------------------------------~~~~D~i~~----~~~---l~~l~~-~~~~~~~~~i~~~LkpgG~l~l 136 (201)
T d1pjza_ 97 --------------------------------IGHCAAFYD----RAA---MIALPA-DMRERYVQHLEALMPQACSGLL 136 (201)
T ss_dssp --------------------------------HHSEEEEEE----ESC---GGGSCH-HHHHHHHHHHHHHSCSEEEEEE
T ss_pred --------------------------------ccceeEEEE----Eee---eEecch-hhhHHHHHHHHHhcCCCcEEEE
Confidence 246899876 111 111111 1235789999999999998776
Q ss_pred EecCC
Q 004354 676 NLVSR 680 (759)
Q Consensus 676 N~~~~ 680 (759)
.....
T Consensus 137 ~~~~~ 141 (201)
T d1pjza_ 137 ITLEY 141 (201)
T ss_dssp EEESS
T ss_pred EEccc
Confidence 55443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.44 E-value=1.5e-07 Score=92.93 Aligned_cols=108 Identities=10% Similarity=0.027 Sum_probs=80.4
Q ss_pred HHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC
Q 004354 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ 129 (759)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~ 129 (759)
.+++..++.. ..+.+|||+|||+|..+..|++. + -.+|+++|+++.+++.++++....+ .+++++.+|..+.-
T Consensus 45 G~lL~~lv~~---~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l 121 (214)
T d2cl5a1 45 GQIMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLI 121 (214)
T ss_dssp HHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG
T ss_pred HHHHHHHHHh---hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccc
Confidence 3344444433 34579999999999999999875 1 2369999999999999988775433 46999999987642
Q ss_pred ---------CcccEEEeCCCChhH-HHHHHHHHHHhcccCcEEEE
Q 004354 130 ---------GGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVC 164 (759)
Q Consensus 130 ---------gtfD~Ii~~~~~~~~-~~~~l~ei~rvLkpGG~lii 164 (759)
+.||+|+........ ....+.+..++|+|||.+++
T Consensus 122 ~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 122 PQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp GGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cchhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence 679999997533222 44567788899999998776
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.44 E-value=2.4e-07 Score=92.06 Aligned_cols=98 Identities=22% Similarity=0.349 Sum_probs=75.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.||.|+|.++..|.+.. .+|++||+++.+++.|++.+.- ..+++++++|+..-..+
T Consensus 69 ~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d~~~g~~~------------- 131 (224)
T d1vbfa_ 69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSY--YNNIKLILGDGTLGYEE------------- 131 (224)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTT--CSSEEEEESCGGGCCGG-------------
T ss_pred cccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhc--ccccccccCchhhcchh-------------
Confidence 455799999999999999888874 5899999999999999998753 46899999998653221
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
..+||+|++..-- +.+ ...+.+.|+|||.||+-+-
T Consensus 132 --------------------~~pfD~Iiv~~a~-----------~~i-----p~~l~~qLk~GGrLV~pvg 166 (224)
T d1vbfa_ 132 --------------------EKPYDRVVVWATA-----------PTL-----LCKPYEQLKEGGIMILPIG 166 (224)
T ss_dssp --------------------GCCEEEEEESSBB-----------SSC-----CHHHHHTEEEEEEEEEEEC
T ss_pred --------------------hhhHHHHHhhcch-----------hhh-----hHHHHHhcCCCCEEEEEEc
Confidence 2579999994321 111 1345678999999998763
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.44 E-value=6.5e-07 Score=93.59 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=85.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
...+||.++.|+|+.+..+... ..+|++||+++..++.|++.+....-++++++.+|+.++++....
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~----------- 211 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK----------- 211 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH-----------
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHh-----------
Confidence 4579999999999998877653 459999999999999999987322124699999999999887652
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC-----hHHHHHHHHHccCcCcEEEEEecC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~-----~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
.+.+||+||+|.-..... ..... -.+++..+.++|+|||+|++...+
T Consensus 212 ------------------~~~~fD~Vi~DpP~~~~~------~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 212 ------------------EGERFDLVVLDPPAFAKG------KKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp ------------------TTCCEEEEEECCCCSCCS------TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ------------------hhcCCCEEEEcCCccccc------hHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 247899999987432111 12221 236788899999999999886543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.43 E-value=1.5e-07 Score=93.18 Aligned_cols=101 Identities=15% Similarity=0.121 Sum_probs=77.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
.+.+||.||+|+|.++..|.+.. .+|++||+++++++.|++.+. ++++++.+|..++ .
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~----~------------ 77 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK----DGITYIHSRFEDA----Q------------ 77 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGC----C------------
T ss_pred CCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccc----ccccccccccccc----c------------
Confidence 46789999999999999888764 489999999999999999875 3699999986543 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHH-HccCcCcEEEEEecC
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVK-DALSEQGLFIVNLVS 679 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~-~~L~~~Gilv~N~~~ 679 (759)
.+.+||+|++ .+...-+.. ...+|..++ +.|+|||.+++-+..
T Consensus 78 ------------------~~~~fD~I~~----~~vleh~~d------~~~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 78 ------------------LPRRYDNIVL----THVLEHIDD------PVALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp ------------------CSSCEEEEEE----ESCGGGCSS------HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ------------------cccccccccc----cceeEecCC------HHHHHHHHHHHhcCCCceEEEEeCC
Confidence 1367999997 222111211 267888887 679999999987654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.42 E-value=5.2e-07 Score=92.65 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=80.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|.++.++.+..+ .+|++|++++..++.|++.. |+ ..++.+...|..++
T Consensus 51 ~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l--~~~~~~~~~d~~~~------------- 114 (280)
T d2fk8a1 51 KPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDT--NRSRQVLLQGWEDF------------- 114 (280)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCC--SSCEEEEESCGGGC-------------
T ss_pred CCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhcc--ccchhhhhhhhhhh-------------
Confidence 4567999999999999999988865 59999999999999999886 54 56788888885432
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC---hHHHHHHHHHccCcCcEEEEEecCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~---~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
..+||.|+. - +| -.++- -..||+.+++.|+|||.+++..+..
T Consensus 115 -----------------------~~~fD~i~s----i----~~---~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~ 159 (280)
T d2fk8a1 115 -----------------------AEPVDRIVS----I----EA---FEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 159 (280)
T ss_dssp -----------------------CCCCSEEEE----E----SC---GGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred -----------------------ccchhhhhH----h----hH---HHHhhhhhHHHHHHHHHhccCCCceEEEEEeec
Confidence 257999986 1 11 11221 2689999999999999999986543
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.41 E-value=3.5e-07 Score=90.25 Aligned_cols=125 Identities=15% Similarity=0.221 Sum_probs=86.7
Q ss_pred eecC-CccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC
Q 004354 496 KVYH-GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 574 (759)
Q Consensus 496 ~~d~-~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg 574 (759)
.++. .++..||..+++.-.+ . .....+||.||.|+|.++..|.+... .+|++||+|+.+++.|++.+.
T Consensus 54 ~i~~g~~is~P~~~a~ml~~L--~--------l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~ 122 (215)
T d1jg1a_ 54 PIPAGQTVSAPHMVAIMLEIA--N--------LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLE 122 (215)
T ss_dssp ECSTTCEECCHHHHHHHHHHH--T--------CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhHHHHHHhh--c--------cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHH
Confidence 3444 3667788666553321 1 14557999999999999998887753 579999999999999998762
Q ss_pred CCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC
Q 004354 575 FTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF 654 (759)
Q Consensus 575 l~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f 654 (759)
-..-+++.++.+|+.+-... ...||+|++...- ...|.
T Consensus 123 ~~g~~nv~~~~gd~~~g~~~---------------------------------~~pfD~Iiv~~a~-------~~ip~-- 160 (215)
T d1jg1a_ 123 RAGVKNVHVILGDGSKGFPP---------------------------------KAPYDVIIVTAGA-------PKIPE-- 160 (215)
T ss_dssp HTTCCSEEEEESCGGGCCGG---------------------------------GCCEEEEEECSBB-------SSCCH--
T ss_pred HcCCceeEEEECccccCCcc---------------------------------cCcceeEEeeccc-------ccCCH--
Confidence 11136899999998653211 3679999994322 11232
Q ss_pred ChHHHHHHHHHccCcCcEEEEEecCC
Q 004354 655 VEGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 655 ~~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
.+.+.|+|||.+|+-+...
T Consensus 161 -------~l~~qL~~gGrLv~pv~~~ 179 (215)
T d1jg1a_ 161 -------PLIEQLKIGGKLIIPVGSY 179 (215)
T ss_dssp -------HHHHTEEEEEEEEEEECSS
T ss_pred -------HHHHhcCCCCEEEEEEccC
Confidence 2456799999999877443
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.39 E-value=1.3e-07 Score=95.35 Aligned_cols=108 Identities=13% Similarity=0.064 Sum_probs=76.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
++..+||.||+|+|.....+... +..+|++||+++.+++.|++.. ......++.++++|+..- ..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~---~~---------- 88 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR---HM---------- 88 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS---CC----------
T ss_pred CCcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhh---cc----------
Confidence 45579999999999766556555 3348999999999999999775 333456799999996321 00
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh----HHHHHHHHHccCcCcEEEEEec
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~----~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
.....||+|++- ... ...+.+ ..+|+.+.+.|+|||+|++.+.
T Consensus 89 -------------------~~~~~fD~V~~~----~~l------~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 89 -------------------DLGKEFDVISSQ----FSF------HYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp -------------------CCSSCEEEEEEE----SCG------GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -------------------cccccceEEEEc----cee------eecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 013679999871 110 111111 4689999999999999998774
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.2e-06 Score=89.35 Aligned_cols=131 Identities=16% Similarity=0.143 Sum_probs=86.0
Q ss_pred CCCCeEEEEcccccHHHHHHHH----hCCCC--cEEEEEcCHHHHHHHHhhcCC-CCCC--CeEEEEccHHHHHHhhccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHE----CMPFV--GIEAVELDLTMLNLAEDYFGF-TQDK--SLKVHITDGIKFVREMKSS 598 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~----~~p~~--~i~~VEiDp~v~~vA~~~Fgl-~~~~--rl~v~i~Da~~~l~~~~~~ 598 (759)
....+||.||+|.|.++..|.. .++.. .+++||+++.+++.|++.+.- ..-+ ++.++..++.++......
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 117 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE- 117 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT-
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc-
Confidence 3445899999999987665543 44543 679999999999999998732 2223 455677777777554331
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 599 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
.....+||+|+. ......+. . -..+|+.+++.|+|||+|++.+.
T Consensus 118 --------------------------~~~~~~fD~I~~----~~~l~~~~--d----~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 118 --------------------------KKELQKWDFIHM----IQMLYYVK--D----IPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp --------------------------SSSCCCEEEEEE----ESCGGGCS--C----HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --------------------------cCCCCceeEEEE----ccceecCC--C----HHHHHHHHHhhCCCCCEEEEEEe
Confidence 123578999998 21111111 1 15799999999999999998876
Q ss_pred CCChhHHHHHHHHHHHhc
Q 004354 679 SRSQATKDMVISRMKMVF 696 (759)
Q Consensus 679 ~~~~~~~~~v~~~l~~vF 696 (759)
...... ..+...+...|
T Consensus 162 ~~~~~~-~~l~~~~~~~~ 178 (280)
T d1jqea_ 162 SGSSGW-DKLWKKYGSRF 178 (280)
T ss_dssp CTTSHH-HHHHHHHGGGS
T ss_pred cCcchH-HHHHHHHHHhc
Confidence 654432 23344444444
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.37 E-value=3.1e-07 Score=91.05 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=74.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
..+.+||.||+|+|.++..|... +.+|++||+++.+++.|++...- .++.+|+.+. .
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~------~~~~~~~~~l----~----------- 97 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK------NVVEAKAEDL----P----------- 97 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS------CEEECCTTSC----C-----------
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccccc------cccccccccc----c-----------
Confidence 45679999999999999999876 45999999999999999997531 2566765442 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE--cCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILII--DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~--D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
..+.+||+|+. ++..- + |. ...+|+.+.+.|+|||+|++.+..
T Consensus 98 ------------------~~~~~fD~ii~~~~~~~~-----~--~d----~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 98 ------------------FPSGAFEAVLALGDVLSY-----V--EN----KDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp ------------------SCTTCEEEEEECSSHHHH-----C--SC----HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ------------------cccccccceeeecchhhh-----h--hh----HHHHHHHHHhhcCcCcEEEEEECC
Confidence 12468999986 22110 1 11 267999999999999999998753
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=4.8e-07 Score=89.57 Aligned_cols=112 Identities=13% Similarity=0.034 Sum_probs=86.0
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTS 127 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~ 127 (759)
...+++..+++. ....+|||||||+|.-+.++++.- -.+|+.+|.++...+.|++.+... ...++++.+|+.+
T Consensus 46 ~~g~lL~~L~~~---~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e 122 (219)
T d2avda1 46 EQAQLLANLARL---IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 122 (219)
T ss_dssp HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHHc---cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhh
Confidence 344445444443 356799999999999999998751 236999999999999999887543 3569999999755
Q ss_pred CC---------CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 128 MQ---------GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 128 ~~---------gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.. ++||+|+..... .....+++.+.++|+|||.+++-..
T Consensus 123 ~l~~~~~~~~~~~fD~ifiD~dk-~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 123 TLDELLAAGEAGTFDVAVVDADK-ENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp HHHHHHHTTCTTCEEEEEECSCS-TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred cchhhhhhcccCCccEEEEeCCH-HHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 32 689999997533 3467888999999999999988643
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.35 E-value=4.6e-07 Score=91.81 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=77.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||+|.|.++..|.+.+|..+++++|+ |.+++.|++++ .....+|+.++.+|..+ ..
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~---~~----------- 144 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK---PL----------- 144 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS---CC-----------
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc---cc-----------
Confidence 4557999999999999999999999999999999 88999999887 11236799999998432 11
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCCh---HHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~---~~fl~~~~~~L~~~Gilv~N 676 (759)
...||+|++ ... -.++-+ ..+|+++++.|+|||.|++.
T Consensus 145 ---------------------p~~~D~v~~----~~v-------Lh~~~d~~~~~lL~~i~~~LkpgG~llI~ 185 (256)
T d1qzza2 145 ---------------------PVTADVVLL----SFV-------LLNWSDEDALTILRGCVRALEPGGRLLVL 185 (256)
T ss_dssp ---------------------SCCEEEEEE----ESC-------GGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------cccchhhhc----ccc-------ccccCcHHHHHHHHHHHhhcCCcceeEEE
Confidence 245999987 111 111222 46899999999999976654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.33 E-value=1.2e-06 Score=90.21 Aligned_cols=109 Identities=14% Similarity=0.150 Sum_probs=82.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.||+|.|+++.++...++ .+|++|+++++-++.|++.. |+ ..++.+...|... .
T Consensus 60 ~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l--~~~v~~~~~d~~~-----~-------- 123 (291)
T d1kpia_ 60 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDS--PRRKEVRIQGWEE-----F-------- 123 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCC--SSCEEEEECCGGG-----C--------
T ss_pred CCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhcc--chhhhhhhhcccc-----c--------
Confidence 5668999999999999999988876 59999999999999998876 55 5789999988531 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEE-cCCCCCCCCCCCcCCCC---C-ChHHHHHHHHHccCcCcEEEEEecC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAAD---F-VEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~-D~~s~d~~~g~scPp~~---f-~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
+.+||.|+. ..+. -|. ++.. . .=+.|++.+.+.|+|||.+++..++
T Consensus 124 -----------------------~~~fD~i~sie~~e-----H~~-~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 124 -----------------------DEPVDRIVSLGAFE-----HFA-DGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp -----------------------CCCCSEEEEESCGG-----GTT-CCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred -----------------------ccccceEeechhHH-----hcc-hhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 367999985 1111 110 0110 0 1268999999999999999998876
Q ss_pred CC
Q 004354 680 RS 681 (759)
Q Consensus 680 ~~ 681 (759)
..
T Consensus 175 ~~ 176 (291)
T d1kpia_ 175 IP 176 (291)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.33 E-value=5.1e-07 Score=89.64 Aligned_cols=121 Identities=15% Similarity=0.193 Sum_probs=83.4
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhC------CCCcEEEEEcCHHHHHHHHhhcC
Q 004354 501 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECM------PFVGIEAVELDLTMLNLAEDYFG 574 (759)
Q Consensus 501 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~------p~~~i~~VEiDp~v~~vA~~~Fg 574 (759)
++..|+..+.+.-+.... ..+..+||+||.|+|.++..|.+.. +..+|++||+++.+++.|++.+.
T Consensus 60 ~is~P~~~a~~l~~L~~~--------l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~ 131 (223)
T d1r18a_ 60 TISAPHMHAFALEYLRDH--------LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLN 131 (223)
T ss_dssp EECCHHHHHHHHHHTTTT--------CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred eeehhhhHHHHHHHHhhc--------cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhh
Confidence 566677666554322100 1345799999999999888887763 34589999999999999988752
Q ss_pred C-----CCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCc
Q 004354 575 F-----TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTC 649 (759)
Q Consensus 575 l-----~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~sc 649 (759)
- ..-.++.++.+||.+-... ...||+|+++....+
T Consensus 132 ~~~~~~~~~~nv~~~~~d~~~~~~~---------------------------------~~~fD~Iiv~~a~~~------- 171 (223)
T d1r18a_ 132 TDDRSMLDSGQLLIVEGDGRKGYPP---------------------------------NAPYNAIHVGAAAPD------- 171 (223)
T ss_dssp HHHHHHHHHTSEEEEESCGGGCCGG---------------------------------GCSEEEEEECSCBSS-------
T ss_pred hcchhhcCccEEEEEeccccccccc---------------------------------ccceeeEEEEeechh-------
Confidence 1 0125799999998753211 257999999553221
Q ss_pred CCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 650 PAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 650 Pp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
.| +.+.+.|+|||.+|+-+.
T Consensus 172 ~p---------~~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 172 TP---------TELINQLASGGRLIVPVG 191 (223)
T ss_dssp CC---------HHHHHTEEEEEEEEEEES
T ss_pred ch---------HHHHHhcCCCcEEEEEEe
Confidence 12 245689999999998764
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.31 E-value=7.6e-07 Score=85.53 Aligned_cols=107 Identities=12% Similarity=0.139 Sum_probs=80.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-l~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
...+||.++.|+|++.......- ...|+.||.|+..++++++++. +...++++++.+|+.++++....
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srG-a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~---------- 109 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---------- 109 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH----------
T ss_pred CCCEEEEcccccccccceeeecc-hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcc----------
Confidence 45799999999999988655552 3489999999999999999872 12356899999999999987641
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCC-CChHHHHHHHHH--ccCcCcEEEEEe
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-FVEGSFLLTVKD--ALSEQGLFIVNL 677 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~-f~~~~fl~~~~~--~L~~~Gilv~N~ 677 (759)
.+.+||+|++|. |-. -.-.+.|..+.+ .|+++|++++-.
T Consensus 110 -------------------~~~~fDlIflDP------------PY~~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 110 -------------------EKLQFDLVLLDP------------PYAKQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp -------------------TTCCEEEEEECC------------CGGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred -------------------cCCCcceEEech------------hhhhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 136899999964 211 112556777654 699999998754
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.31 E-value=1.3e-06 Score=89.85 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=82.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||.||+|.|.++.++.+.++ .+|++|.++++-++.|++.. .....+++++..+|..++
T Consensus 61 ~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~--------------- 124 (285)
T d1kpga_ 61 QPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--------------- 124 (285)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---------------
T ss_pred CCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc---------------
Confidence 5668999999999999999998875 69999999999999998875 222367999999996432
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
+..||.|+. + +|.+.-..-.-..|++.+.+.|+|||.+++..++
T Consensus 125 ---------------------~~~fD~i~s-i-------~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 125 ---------------------DEPVDRIVS-I-------GAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp ---------------------CCCCSEEEE-E-------SCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred ---------------------cccccceee-e-------hhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 257998876 2 2211111112267999999999999999987765
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=9.1e-07 Score=87.71 Aligned_cols=111 Identities=7% Similarity=0.029 Sum_probs=80.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-----------------CCCCeEEEEccHHH
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----------------QDKSLKVHITDGIK 590 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-----------------~~~rl~v~i~Da~~ 590 (759)
....+||++|+|.|..+.+|... +.+|++||++|.+++.|++..+.. ...+++++++|..+
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 45579999999999999999886 459999999999999999876431 24678899999766
Q ss_pred HHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcC
Q 004354 591 FVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ 670 (759)
Q Consensus 591 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~ 670 (759)
..... ...||+|+. ......+ +|. .-..+++.+.++|+||
T Consensus 122 l~~~~--------------------------------~~~fd~i~~----~~~l~~~--~~~--~r~~~~~~~~~~Lkpg 161 (229)
T d2bzga1 122 LPRTN--------------------------------IGKFDMIWD----RGALVAI--NPG--DRKCYADTMFSLLGKK 161 (229)
T ss_dssp GGGSC--------------------------------CCCEEEEEE----SSSTTTS--CGG--GHHHHHHHHHHTEEEE
T ss_pred ccccc--------------------------------cCceeEEEE----EEEEEec--cch--hhHHHHHHHHhhcCCc
Confidence 53221 367999976 1111111 222 2467999999999999
Q ss_pred cEEEEEecCC
Q 004354 671 GLFIVNLVSR 680 (759)
Q Consensus 671 Gilv~N~~~~ 680 (759)
|.+++.....
T Consensus 162 G~~~l~~~~~ 171 (229)
T d2bzga1 162 FQYLLCVLSY 171 (229)
T ss_dssp EEEEEEEEEC
T ss_pred ceEEEEEccc
Confidence 9877665443
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.30 E-value=7e-07 Score=91.45 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=80.9
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc-----------cCCCCcEEEEeecccCC---Ccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-----------RDRSDMRWRVMDMTSMQ---GGL 132 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~-----------~~~~~i~f~~~D~~~~~---gtf 132 (759)
....+||.+|+|.|..+..+++.+..+|+.+|+++.+++.+++... ...++++++.+|+...- ++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 3567999999999999999888777789999999999999987542 13578999999987654 789
Q ss_pred cEEEeCCCChh-----H-HHHHHHHHHHhcccCcEEEEEE
Q 004354 133 DALMEPELGHK-----L-GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 133 D~Ii~~~~~~~-----~-~~~~l~ei~rvLkpGG~liiit 166 (759)
|+|++...... . -..+++.+++.|+|||.+++-.
T Consensus 151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 99998442211 1 4689999999999999998765
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=5.4e-06 Score=83.46 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=72.3
Q ss_pred CCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC---------CcccE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ---------GGLDA 134 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~---------gtfD~ 134 (759)
+..+|||+|||+|..+..|+.. +. +++|+|+|+.+++.|+++..... .++.+.+.+....- ++||+
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~-~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGW-YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCc-cccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 4569999999999999998876 34 69999999999999999876543 34666665443221 68999
Q ss_pred EEeCCCCh-------------------------------------hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 135 LMEPELGH-------------------------------------KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 135 Ii~~~~~~-------------------------------------~~~~~~l~ei~rvLkpGG~liiit 166 (759)
|+|++... ....+++++..+.++..|.+.+..
T Consensus 140 ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~i 208 (250)
T d2h00a1 140 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCML 208 (250)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEE
T ss_pred EEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEe
Confidence 99975211 014556777788899999886544
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.29 E-value=1e-06 Score=85.55 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=71.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.||+|+|.++..+. ++++||++|.+++.|++. ++.++.+|+.+. .
T Consensus 37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l----~------------- 86 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-------GVFVLKGTAENL----P------------- 86 (208)
T ss_dssp SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBC----C-------------
T ss_pred CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-------cccccccccccc----c-------------
Confidence 3589999999998776663 568999999999999974 478999987543 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCCh
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 682 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~ 682 (759)
..+..||+|+. .....-+ |. -..+|+.+++.|+|||.+++.....+.
T Consensus 87 ----------------~~~~~fD~I~~----~~~l~h~--~d----~~~~l~~~~~~L~pgG~l~i~~~~~~~ 133 (208)
T d1vlma_ 87 ----------------LKDESFDFALM----VTTICFV--DD----PERALKEAYRILKKGGYLIVGIVDRES 133 (208)
T ss_dssp ----------------SCTTCEEEEEE----ESCGGGS--SC----HHHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred ----------------ccccccccccc----ccccccc--cc----cccchhhhhhcCCCCceEEEEecCCcc
Confidence 12467999997 2111111 11 257999999999999999988765543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.27 E-value=2.2e-07 Score=94.48 Aligned_cols=101 Identities=11% Similarity=0.088 Sum_probs=80.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.+|+|.|.++..+... +..+|++||++|..++.|++.. |+ +++++++.+|+.++..
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l--~~~v~~~~~D~~~~~~----------- 171 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKV--EDRMSAYNMDNRDFPG----------- 171 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCTTTCCC-----------
T ss_pred CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCC--CceEEEEEcchHHhcc-----------
Confidence 34578999999999999888876 4569999999999999999987 55 5789999999877632
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
...||.|+++. |+ ...+||..+.+.|++||++.+....
T Consensus 172 -----------------------~~~~D~Ii~~~------------p~--~~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 172 -----------------------ENIADRILMGY------------VV--RTHEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp -----------------------CSCEEEEEECC------------CS--SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred -----------------------CCCCCEEEECC------------CC--chHHHHHHHHhhcCCCCEEEEEecc
Confidence 25699999842 11 2357899999999999998765433
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.25 E-value=6.5e-07 Score=86.77 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=84.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.....+|.+++|+|..+..+.+.+|+.+|.++|.||.+++.|++.+.- ..+|++++.++..+.-.....
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~-~~~r~~~~~~~f~~~~~~~~~---------- 90 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE-FSDRVSLFKVSYREADFLLKT---------- 90 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG-GTTTEEEEECCGGGHHHHHHH----------
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcc-ccccccchhHHHhhHHHHHHH----------
Confidence 345689999999999999998888999999999999999999998732 257899999976553222210
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-ChHHHHHHHHHccCcCcEEEEEe
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
....++|.|++|+--+.. -+.-+...| ...++|..+.+.|+|||.+++-.
T Consensus 91 ------------------~~~~~vdgIl~DlGvSs~--Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 91 ------------------LGIEKVDGILMDLGVSTY--QLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp ------------------TTCSCEEEEEEECSCCHH--HHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred ------------------cCCCCcceeeeccchhHh--hhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 013679999999732100 000001112 24578999999999999887543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=1.2e-06 Score=84.04 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=78.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 609 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~ 609 (759)
..+||.++.|+|++..-+...- ...|+.||+|+..++++++.+......+.+++.+|+.+|+...
T Consensus 44 ~~~vLDlfaGsG~~giealsrG-a~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~-------------- 108 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK-------------- 108 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC--------------
T ss_pred hhhhhhhhccccceeeeEEecC-cceeEEEEEeechhhHHHHHHhhccccceeeeeeccccccccc--------------
Confidence 3689999999999987655553 3489999999999999998863222356899999999998653
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHH--ccCcCcEEEEEe
Q 004354 610 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD--ALSEQGLFIVNL 677 (759)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~--~L~~~Gilv~N~ 677 (759)
..+||+|++|..- ..-.-...+..+.+ .|+++|++++-.
T Consensus 109 ------------------~~~fDlIf~DPPY-----------~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 109 ------------------GTPHNIVFVDPPF-----------RRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp ------------------CCCEEEEEECCSS-----------STTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ------------------ccccCEEEEcCcc-----------ccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 3689999997411 11133567777765 599999999754
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.24 E-value=1.8e-06 Score=88.68 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=77.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCC-CCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT-QDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~-~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.||+|+|.++..|... +.+|++||+++.|++.|++.. +.. ...+..+...|....-....
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 125 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP------- 125 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-------
T ss_pred cCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-------
Confidence 34579999999999999988876 359999999999999999876 211 01234455555544322221
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCC-hHHHHHHHHHccCcCcEEEEEecC
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~-~~~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
....||+|++-.++- .-+..+....- -..+|+.+.+.|+|||+|++.+..
T Consensus 126 -----------------------~~~~fd~v~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 126 -----------------------AGDGFDAVICLGNSF---AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp -----------------------CTTCEEEEEECSSCG---GGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred -----------------------CCCCceEEEEecCch---hhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 136799999722111 11111111111 245999999999999999998754
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.23 E-value=1.5e-06 Score=82.55 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=72.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.+|.|.|++...+... ..++++||+||.++++|++.+ |+ + -+++..|+-.++.....
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~--~--~~v~~~~~d~~~~~~~~------- 106 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGL--G--ARVVALPVEVFLPEAKA------- 106 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTC--C--CEEECSCHHHHHHHHHH-------
T ss_pred cCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhcc--c--cceeeeehhcccccccc-------
Confidence 34569999999999998766665 358999999999999999886 55 2 36777787777665431
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHH--HHccCcCcEEEEEe
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTV--KDALSEQGLFIVNL 677 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~--~~~L~~~Gilv~N~ 677 (759)
...+||+|++|. |-..-..+.+..+ ...|+|||++++--
T Consensus 107 ----------------------~~~~fD~If~DP------------PY~~~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 107 ----------------------QGERFTVAFMAP------------PYAMDLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp ----------------------TTCCEEEEEECC------------CTTSCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred ----------------------cCCccceeEEcc------------ccccCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 246899999974 2111112233333 35799999999754
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.23 E-value=3.9e-06 Score=83.72 Aligned_cols=85 Identities=8% Similarity=0.133 Sum_probs=65.2
Q ss_pred CCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 66 SSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
..++++|||||||+|.++..|++.+. +|++||+++.+++.++++. ...++++++++|+.++. .....|+ .+.+.
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~-~~~~n~~i~~~D~l~~~~~~~~~~~vv-~NLPY 95 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKL-VDHDNFQVLNKDILQFKFPKNQSYKIF-GNIPY 95 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHT-TTCCSEEEECCCGGGCCCCSSCCCEEE-EECCG
T ss_pred CCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHh-hcccchhhhhhhhhhccccccccceee-eeehh
Confidence 36899999999999999999999865 6999999999999988876 34578999999999876 2223344 44445
Q ss_pred hHHHHHHHHHH
Q 004354 143 KLGNQYLSEVK 153 (759)
Q Consensus 143 ~~~~~~l~ei~ 153 (759)
.....++..+.
T Consensus 96 nIss~il~~ll 106 (235)
T d1qama_ 96 NISTDIIRKIV 106 (235)
T ss_dssp GGHHHHHHHHH
T ss_pred hhhHHHHHHHH
Confidence 55445555443
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.22 E-value=7.3e-06 Score=83.29 Aligned_cols=148 Identities=12% Similarity=0.131 Sum_probs=97.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
...+++.+|.|+|+++..++. +|+.+|++||++|..+++|++.. |+ ..++.++.+|..+.+...
T Consensus 110 ~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~--~~~~~i~~~~~~~~~~~~---------- 176 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGV--SDRFFVRKGEFLEPFKEK---------- 176 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTC--TTSEEEEESSTTGGGGGG----------
T ss_pred cccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCC--CceeEEeecccccccccc----------
Confidence 456899999999999988875 48899999999999999999875 54 578999999976654432
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCC-----CcCCCCCCh----HHHHHH-HHHccCcCcEEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM-----TCPAADFVE----GSFLLT-VKDALSEQGLFIV 675 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~-----scPp~~f~~----~~fl~~-~~~~L~~~Gilv~ 675 (759)
..+||+|+...--=.....+ .-|..++.. .+|++. +++.|+|||++++
T Consensus 177 ----------------------~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~ 234 (271)
T d1nv8a_ 177 ----------------------FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 234 (271)
T ss_dssp ----------------------TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred ----------------------cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEE
Confidence 25799999843100000000 011111110 234433 5778999999998
Q ss_pred EecCCChhHHHHHHHHHHHhcCceEEEeecCCccEEEEEecCC
Q 004354 676 NLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 718 (759)
Q Consensus 676 N~~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~ 718 (759)
=+-. ++ .+.+++.|..+-.++--.+..+++++.+..
T Consensus 235 Eig~-~Q------~~~v~~l~~~~g~~kDl~g~~R~~~~~k~~ 270 (271)
T d1nv8a_ 235 EIGE-DQ------VEELKKIVSDTVFLKDSAGKYRFLLLNRRS 270 (271)
T ss_dssp ECCT-TC------HHHHTTTSTTCEEEECTTSSEEEEEEECCC
T ss_pred EECH-HH------HHHHHHHHHhCCEEeccCCCcEEEEEEEcC
Confidence 7732 22 234556677655554334567888887754
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=1.9e-06 Score=89.56 Aligned_cols=105 Identities=14% Similarity=0.113 Sum_probs=75.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 608 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~ 608 (759)
+.++||.||.|+|.+++++.+..+ .+|.+||+++.+..+++..-.....++++++.+|..+. .
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l----~------------ 97 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV----H------------ 97 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS----C------------
T ss_pred CcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHh----c------------
Confidence 457899999999999999998743 48999999999876554332112367899999986553 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 609 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
....+||+|+.+..... ....-.-+.++..+.+.|+|||.++
T Consensus 98 -----------------~~~~~~D~Ivse~~~~~-------~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 98 -----------------LPVEKVDVIISEWMGYF-------LLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp -----------------CSCSCEEEEEECCCBTT-------BTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred -----------------CccccceEEEEeeeeee-------cccccccHHHHHHHHhcCCCCcEEe
Confidence 12368999998653321 1222233567777888999999887
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=2.9e-06 Score=88.84 Aligned_cols=102 Identities=20% Similarity=0.269 Sum_probs=75.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
+..+||.||.|+|.|++++.+.. ..+|.+||.++ +++.|++.. ++ .++++++.+|..+. .
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~-~~~~a~~~~~~~~~--~~~i~~i~~~~~~l----~--------- 100 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSS-IIEMAKELVELNGF--SDKITLLRGKLEDV----H--------- 100 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESST-HHHHHHHHHHHTTC--TTTEEEEESCTTTS----C---------
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCH-HHHHHHHHHHHhCc--cccceEEEeehhhc----c---------
Confidence 45799999999999999988874 44999999997 557777654 54 67899999986543 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
....+||+|+......- ....-.-..++..+.+.|+|||+++
T Consensus 101 --------------------~~~~~~D~i~se~~~~~-------~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 101 --------------------LPFPKVDIIISEWMGYF-------LLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp --------------------CSSSCEEEEEECCCBTT-------BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CcccceeEEEEEeccee-------eccchhHHHHHHHHHhccCCCeEEE
Confidence 12468999998653321 1222234668888899999999886
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.20 E-value=1.3e-06 Score=90.91 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=79.8
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhc------cCCCCcEEEEeecccCC----CcccEEE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV------RDRSDMRWRVMDMTSMQ----GGLDALM 136 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~------~~~~~i~f~~~D~~~~~----gtfD~Ii 136 (759)
...+||.||+|.|..+..+++. +..+|+++|+++.+++.+++.+. ...++++++.+|+.+.- .+||+|+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 5679999999999999998876 35689999999999999988652 13578999999998764 7899999
Q ss_pred eCCCC-------h-hH-HHHHHHHHHHhcccCcEEEEEE
Q 004354 137 EPELG-------H-KL-GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 137 ~~~~~-------~-~~-~~~~l~ei~rvLkpGG~liiit 166 (759)
+.... . .. -..+++.+++.|+|||.+++-.
T Consensus 157 ~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 74311 1 11 4689999999999999998754
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.20 E-value=2.6e-06 Score=81.66 Aligned_cols=100 Identities=14% Similarity=0.056 Sum_probs=77.4
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEEeecccCC------CcccEEEeC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQ------GGLDALMEP 138 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~---~~i~f~~~D~~~~~------gtfD~Ii~~ 138 (759)
.+.+|||+.||||.++.+.+.+|...|+.||.+..+++..+++..... ....+...|+.+.. ..||+|++.
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 357999999999999999999999999999999999999888765432 23566666654432 579999997
Q ss_pred CCCh-hHHHHHHHHHHH--hcccCcEEEEEEc
Q 004354 139 ELGH-KLGNQYLSEVKR--LLKSGGKFVCLTL 167 (759)
Q Consensus 139 ~~~~-~~~~~~l~ei~r--vLkpGG~liiit~ 167 (759)
+... ......+..+.. +|+++|.+++-+.
T Consensus 123 PPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PPFHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 6432 236667777654 7999998888653
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.19 E-value=3.7e-06 Score=84.40 Aligned_cols=95 Identities=20% Similarity=0.179 Sum_probs=73.7
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCChh--
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHK-- 143 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~~-- 143 (759)
....+|||||||+|.++..++++.. -+++..|.. .+++. .....+++++.+|+.+.....|++++....|.
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~-----~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~ 153 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIEN-----APPLSGIEHVGGDMFASVPQGDAMILKAVCHNWS 153 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTT-----CCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSC
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhhc-----cCCCCCeEEecCCcccccccceEEEEehhhhhCC
Confidence 4567999999999999999998833 258899974 34431 12346799999998765555699998765443
Q ss_pred --HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 144 --LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 144 --~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
....+|+++++.|+|||++++..+
T Consensus 154 de~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 154 DEKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 378899999999999999999875
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.15 E-value=2.5e-06 Score=88.85 Aligned_cols=102 Identities=18% Similarity=0.150 Sum_probs=74.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
+..+||.||.|.|.+++++.+.. ..+|++||+++.+. .|++.. ++ .++++++.+|..+. .
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~G-a~~V~avd~s~~~~-~a~~~~~~n~~--~~~v~~~~~~~~~~----~--------- 95 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSISD-YAVKIVKANKL--DHVVTIIKGKVEEV----E--------- 95 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHH-HHHHHHHHTTC--TTTEEEEESCTTTC----C---------
T ss_pred CcCEEEEEecCCcHHHHHHHHhC-CCEEEEEcCcHHHh-hhhhHHHHhCC--ccccceEeccHHHc----c---------
Confidence 34789999999999999988874 34899999998764 444433 54 57899999987553 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
....+||+|+.+..... ....-.-++++..+.+.|+|||.++
T Consensus 96 --------------------~~~~~~D~ivs~~~~~~-------l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 96 --------------------LPVEKVDIIISEWMGYC-------LFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp --------------------CSSSCEEEEEECCCBBT-------BTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------cccceeEEEeeeeeeee-------eccHHHHHHHHHHHHhcCCCCeEEE
Confidence 12368999998653321 1222233678999999999999887
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.14 E-value=2.3e-06 Score=88.14 Aligned_cols=101 Identities=14% Similarity=0.193 Sum_probs=80.8
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccCC----CcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQ----GGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~~----gtfD~Ii~ 137 (759)
...+||.||.|.|..+..+++. +..+|+++|+++.+++.+++.... ..++++++..|+...- ++||+|++
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 4679999999999999999876 456899999999999998875421 3578999999987664 78999998
Q ss_pred CCCChh------H-HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 138 PELGHK------L-GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 138 ~~~~~~------~-~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
...... . -..+++.+++.|+|||.+++-+-+
T Consensus 169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 169 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 542211 1 578999999999999999886543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.11 E-value=3e-06 Score=84.05 Aligned_cols=98 Identities=14% Similarity=-0.004 Sum_probs=79.8
Q ss_pred CCCeEEEECCCcchhHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC----------Cccc
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ----------GGLD 133 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G-~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~----------gtfD 133 (759)
...+|||+|+++|.-+..|++. + -.+|+.+|.++...+.|++.+.+.+ ..++++++|+.+.- ++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 4679999999999999999875 1 1369999999999999998876543 46899999986542 5799
Q ss_pred EEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 134 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 134 ~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+|+.... +.....+++.+.++|+|||.+++-.
T Consensus 139 ~iFiDa~-k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 139 FIFVDAD-KDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EEEECSC-STTHHHHHHHHHHHBCTTCCEEEET
T ss_pred EEEeccc-hhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 9999753 3346789999999999999988764
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.10 E-value=8.1e-06 Score=83.21 Aligned_cols=99 Identities=22% Similarity=0.250 Sum_probs=81.1
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhc-----cCCCCcEEEEeecccCC----CcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQ----GGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~-----~~~~~i~f~~~D~~~~~----gtfD~Ii~ 137 (759)
...+||.||-|.|..+..+++. +..+|+.+|+++.+++.+++... ...++++++..|....- .+||+|+.
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~ 154 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence 5679999999999999999875 56789999999999999888652 24578999999987654 78999998
Q ss_pred CCCCh-----hH-HHHHHHHHHHhcccCcEEEEEE
Q 004354 138 PELGH-----KL-GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 138 ~~~~~-----~~-~~~~l~ei~rvLkpGG~liiit 166 (759)
..... .. -..+++.+++.|+|||.++.-.
T Consensus 155 D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 54211 11 5789999999999999999765
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.08 E-value=7.2e-06 Score=78.48 Aligned_cols=111 Identities=11% Similarity=0.194 Sum_probs=87.9
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-- 129 (759)
.+...+..++.. .+++.++|..||.|..+..+++.+. +|+|+|..+.+++.++++. .+++.+++.+..++.
T Consensus 5 Vll~Evl~~l~~---~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~---~~~~~~~~~~f~~~~~~ 77 (182)
T d1wg8a2 5 VLYQEALDLLAV---RPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLH---LPGLTVVQGNFRHLKRH 77 (182)
T ss_dssp TTHHHHHHHHTC---CTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC---CTTEEEEESCGGGHHHH
T ss_pred hHHHHHHHhcCC---CCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhcc---ccceeEeehHHHHHHHH
Confidence 344445566654 6889999999999999999999865 5999999999999887653 457899999888776
Q ss_pred ------CcccEEEeCC-----------CChhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 130 ------GGLDALMEPE-----------LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 130 ------gtfD~Ii~~~-----------~~~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+.+|.|+..- .........|.....+|+|||++++++|..
T Consensus 78 l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs 134 (182)
T d1wg8a2 78 LAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS 134 (182)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred HHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence 6799999732 011226668899999999999999999864
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=2.4e-05 Score=82.41 Aligned_cols=132 Identities=9% Similarity=0.143 Sum_probs=91.4
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC--
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ-- 129 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~-- 129 (759)
+...+.+++.. .++.+|||+-||+|.++..|++. +.+|+|+|+++.+++.|++++.. ...++.|+.+|..+..
T Consensus 200 l~~~v~~~~~~---~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~ 275 (358)
T d1uwva2 200 MVARALEWLDV---QPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 275 (358)
T ss_dssp HHHHHHHHHTC---CTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS
T ss_pred HHHHHHHhhcc---CCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhh
Confidence 33444455543 56789999999999999999876 55799999999999999888654 3467999999987643
Q ss_pred -----CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEe
Q 004354 130 -----GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 191 (759)
Q Consensus 130 -----gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~ 191 (759)
..+|+|+.++.-.- ..+.+..+.+. +|. +++.++..+..+.+.+-.....+|.+.-...
T Consensus 276 ~~~~~~~~d~vilDPPR~G-~~~~~~~l~~~-~~~-~ivYVSCnp~TlaRDl~~l~~~gy~l~~i~~ 339 (358)
T d1uwva2 276 QPWAKNGFDKVLLDPARAG-AAGVMQQIIKL-EPI-RIVYVSCNPATLARDSEALLKAGYTIARLAM 339 (358)
T ss_dssp SGGGTTCCSEEEECCCTTC-CHHHHHHHHHH-CCS-EEEEEESCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hhhhhccCceEEeCCCCcc-HHHHHHHHHHc-CCC-EEEEEeCCHHHHHHHHHHHHHCCCeEeEEEE
Confidence 67999999762211 22455555553 443 6777777665554444333344777665544
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=5.6e-06 Score=84.85 Aligned_cols=102 Identities=17% Similarity=0.258 Sum_probs=81.1
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhc-----cCCCCcEEEEeecccCC----CcccEEE
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQ----GGLDALM 136 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~-----~~~~~i~f~~~D~~~~~----gtfD~Ii 136 (759)
+.+.+||-+|-|.|..+..+.+. +..+|+.+|+++.+++.+++.+. ...++++++..|+...- .+||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 35679999999999999999876 56789999999999999988652 23578999999987654 7899999
Q ss_pred eCCCCh-----hH-HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 137 EPELGH-----KL-GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 137 ~~~~~~-----~~-~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+..... .. -..+++.+++.|+|||.+++-+.+
T Consensus 157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 854211 11 567899999999999999987643
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.01 E-value=6.2e-06 Score=85.29 Aligned_cols=99 Identities=15% Similarity=0.244 Sum_probs=78.0
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeecccCC----CcccEEEe
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQ----GGLDALME 137 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-----~~~~i~f~~~D~~~~~----gtfD~Ii~ 137 (759)
...+||.||-|.|..+..+++. +..+|+.+|+++.+++.+++.+.. ..++++++..|....- .+||+|++
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~ 185 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 185 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence 4679999999999999999885 456899999999999999886532 3478999999987754 78999998
Q ss_pred CCCCh-----hH-HHHHHHHHHHhcccCcEEEEEE
Q 004354 138 PELGH-----KL-GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 138 ~~~~~-----~~-~~~~l~ei~rvLkpGG~liiit 166 (759)
..... .. -..+++.+++.|+|||.++.-+
T Consensus 186 D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 186 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 64221 11 6788999999999999999865
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.01 E-value=7e-06 Score=84.35 Aligned_cols=100 Identities=18% Similarity=0.272 Sum_probs=80.7
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhc-----cCCCCcEEEEeecccCC-----CcccEEE
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQ-----GGLDALM 136 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~-----~~~~~i~f~~~D~~~~~-----gtfD~Ii 136 (759)
...+||-||-|.|..+..+.+. +..+|+.+|+++.+++.+++... ...++++++..|....- ++||+|+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 4579999999999999999876 55689999999999999987542 23578999999976543 6899999
Q ss_pred eCCCCh-----hH-HHHHHHHHHHhcccCcEEEEEEc
Q 004354 137 EPELGH-----KL-GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 137 ~~~~~~-----~~-~~~~l~ei~rvLkpGG~liiit~ 167 (759)
...... .. -..+++.+++.|+|||.+++-.-
T Consensus 160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 160 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 854211 11 57899999999999999998754
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.99 E-value=7e-06 Score=80.05 Aligned_cols=147 Identities=19% Similarity=0.228 Sum_probs=94.3
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~ 128 (759)
..+...+..++.. .++.+|||.|||+|.++..+.+. ....++|+|+++.++.. .....++++|....
T Consensus 5 ~~i~~~m~~l~~~---~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~--------~~~~~~~~~~~~~~ 73 (223)
T d2ih2a1 5 PEVVDFMVSLAEA---PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL--------PPWAEGILADFLLW 73 (223)
T ss_dssp HHHHHHHHHHCCC---CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC--------CTTEEEEESCGGGC
T ss_pred HHHHHHHHHhcCC---CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh--------cccceeeeeehhcc
Confidence 4566677777765 57789999999999999888765 22469999999855422 23457788887766
Q ss_pred C--CcccEEEeCCCCh-------------h------------------HHHHHHHHHHHhcccCcEEEEEEcCc------
Q 004354 129 Q--GGLDALMEPELGH-------------K------------------LGNQYLSEVKRLLKSGGKFVCLTLAE------ 169 (759)
Q Consensus 129 ~--gtfD~Ii~~~~~~-------------~------------------~~~~~l~ei~rvLkpGG~liiit~~~------ 169 (759)
. ..||+++++.... . ....++..+.+.|++||++.+++...
T Consensus 74 ~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~ 153 (223)
T d2ih2a1 74 EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLED 153 (223)
T ss_dssp CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGG
T ss_pred ccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcc
Confidence 6 8899999864110 0 13456788899999999998887321
Q ss_pred -hhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCC
Q 004354 170 -SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 213 (759)
Q Consensus 170 -~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~ 213 (759)
..+++.+++.. .+.+..... --.+......+++++|.++
T Consensus 154 ~~~lR~~l~~~~----~i~i~~~~~-~F~~~~v~t~i~~~~k~~~ 193 (223)
T d2ih2a1 154 FALLREFLAREG----KTSVYYLGE-VFPQKKVSAVVIRFQKSGK 193 (223)
T ss_dssp GHHHHHHHHHHS----EEEEEEEES-CSTTCCCCEEEEEEESSSC
T ss_pred hHHHHHHHHhcC----CEEEEcchh-cCCCCCCcEEEEEEEeCCC
Confidence 12333333322 122222111 1124456677778887543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.91 E-value=1.7e-05 Score=79.31 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=72.8
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCChh---
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHK--- 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~~--- 143 (759)
...+|||||||+|.++..++++-. -+++..|.. .+++.+ ....+++++.+|+.+....+|++++....|.
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~-----~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d 153 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENL-----SGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTD 153 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTC-----CCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCH
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhC-----cccCceEEEecCcccCCCCCcEEEEEeecccCCh
Confidence 346899999999999999998832 269999984 444422 2346899999999875566899998765543
Q ss_pred -HHHHHHHHHHHhcccC---cEEEEEEc
Q 004354 144 -LGNQYLSEVKRLLKSG---GKFVCLTL 167 (759)
Q Consensus 144 -~~~~~l~ei~rvLkpG---G~liiit~ 167 (759)
...++|+++++.|+|| |+++++..
T Consensus 154 ~~~~~iL~~~~~al~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 154 KDCLRILKKCKEAVTNDGKRGKVTIIDM 181 (244)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence 3778999999999999 67777764
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=4.4e-05 Score=76.59 Aligned_cols=60 Identities=20% Similarity=0.141 Sum_probs=52.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHH
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGI 589 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~ 589 (759)
....++|.||.|+|+++..|....|+.+++++|+++..+++|++.. ++ .+|+.++..+..
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l--~~~~~~~~~~~~ 122 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL--SDLIKVVKVPQK 122 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTT
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC--CcceeeeeeccH
Confidence 4567999999999999999999989999999999999999999986 44 678999887643
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.89 E-value=7e-05 Score=71.25 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=74.3
Q ss_pred CCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----------Cccc
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------GGLD 133 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----------gtfD 133 (759)
+++.+||||||+.|..+..+.+. ....++++|+.+ ....+++.++++|+.+.. +.+|
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~----------~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP----------MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC----------CCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc----------ccccCCceEeecccccchhhhhhhhhccCccee
Confidence 57889999999999999998875 335699999877 123567899999998754 6799
Q ss_pred EEEeCCCC----h---------hHHHHHHHHHHHhcccCcEEEEEEcCchh
Q 004354 134 ALMEPELG----H---------KLGNQYLSEVKRLLKSGGKFVCLTLAESH 171 (759)
Q Consensus 134 ~Ii~~~~~----~---------~~~~~~l~ei~rvLkpGG~liiit~~~~~ 171 (759)
+|++.... + ......+.-+.++|++||.|++=.|..+.
T Consensus 91 lVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~ 141 (180)
T d1ej0a_ 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred EEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc
Confidence 99996421 1 11567777888999999999999986543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.87 E-value=2.4e-05 Score=78.16 Aligned_cols=94 Identities=17% Similarity=0.125 Sum_probs=70.7
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCCh----
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGH---- 142 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~---- 142 (759)
...+|||||||+|.++..+++.-. -++++.|..+. ++. ....+++.+...|+.+.....|+++.....|
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~-----~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d 154 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IED-----APSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSD 154 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTT-----CCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCH
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhh-----cccCCceEEecccccccCCCcceEEEEEEeecCCH
Confidence 356899999999999999998833 26999998763 221 2334689999999876444456666654333
Q ss_pred hHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 143 KLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 143 ~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
.....+|+++++.|+|||++++...
T Consensus 155 ~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 155 EHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp HHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEE
Confidence 3488899999999999999998864
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.85 E-value=0.00016 Score=77.79 Aligned_cols=162 Identities=12% Similarity=0.146 Sum_probs=110.5
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh----C----------CCeEEEEeCCHHHHHHHHHH
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G----------FHGITNVDFSKVVISDMLRR 110 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~----G----------~~~VtgIDiS~~~I~~a~~r 110 (759)
+.|.+ ..+...+...+.. .++.+|||..||+|.+...+.+. + ...++|+|+++.+...++-+
T Consensus 143 ~f~TP-~~Iv~~mv~ll~~---~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n 218 (425)
T d2okca1 143 QYFTP-RPLIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN 218 (425)
T ss_dssp GGCCC-HHHHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred hhccc-hhhhHhhheeccC---cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhh
Confidence 44543 5677778787764 56789999999999999877653 1 12399999999999877765
Q ss_pred hccC---CCCcEEEEeecccCC--CcccEEEeCCCCh-------------------hHHHHHHHHHHHhcccCcEEEEEE
Q 004354 111 NVRD---RSDMRWRVMDMTSMQ--GGLDALMEPELGH-------------------KLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 111 ~~~~---~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~-------------------~~~~~~l~ei~rvLkpGG~liiit 166 (759)
..-+ .....+...|..... ..||+|++++... ..-..++..+.+.|++||++.++.
T Consensus 219 ~~l~g~~~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 219 LYLHGIGTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp HHHTTCCSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcCCccccceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 4322 234567788876655 7899999975210 013468899999999999988886
Q ss_pred cCc--------hhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCC
Q 004354 167 LAE--------SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 213 (759)
Q Consensus 167 ~~~--------~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~ 213 (759)
... ..+++.++.. .+...+..++..--...+.+..+++++|.++
T Consensus 299 p~~~L~~~~~~~~iR~~Ll~~---~~i~aIi~LP~~~F~~t~v~t~Ilil~K~k~ 350 (425)
T d2okca1 299 PDNVLFEAGAGETIRKRLLQD---FNLHTILRLPTGIFYAQGVKANVLFFSKGQP 350 (425)
T ss_dssp EHHHHHCSTHHHHHHHHHHHH---EEEEEEEECCSSSSSSTTCCEEEEEEEESSC
T ss_pred chHHhhhhhhHHHHHHHHHHh---cchhHhhcCCcccccCCCCCeEEEEEECCCC
Confidence 321 1234444433 3444555665432235678899999999765
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.81 E-value=1.4e-06 Score=87.52 Aligned_cols=83 Identities=10% Similarity=0.146 Sum_probs=64.2
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ- 129 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~- 129 (759)
..+...+.+.+.. .++++|||||||+|.++..|++.+. +|++||+++.+++.+++++ ...++++++++|+.++.
T Consensus 15 ~~ii~kIv~~~~~---~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~-~~~~n~~ii~~D~l~~~~ 89 (245)
T d1yuba_ 15 EKVLNQIIKQLNL---KETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKL-KLNTRVTLIHQDILQFQF 89 (245)
T ss_dssp TTTHHHHHHHCCC---CSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTT-TTCSEEEECCSCCTTTTC
T ss_pred HHHHHHHHHhcCC---CCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhh-hhccchhhhhhhhhcccc
Confidence 3455556666654 6788999999999999999999865 5999999998887766554 23468999999999877
Q ss_pred --CcccEEEeC
Q 004354 130 --GGLDALMEP 138 (759)
Q Consensus 130 --gtfD~Ii~~ 138 (759)
..++.|+++
T Consensus 90 ~~~~~~~vv~N 100 (245)
T d1yuba_ 90 PNKQRYKIVGN 100 (245)
T ss_dssp CCSSEEEEEEE
T ss_pred ccceeeeEeee
Confidence 455556654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.75 E-value=9.7e-05 Score=71.47 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=48.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 590 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~ 590 (759)
...+||.+|.|+|+++..+... +..+|++||+|+..++.|++.... .+.+.+++.+|..+
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~-~~~~~~~~~~d~~~ 105 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGE-FKGKFKVFIGDVSE 105 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGG-GTTSEEEEESCGGG
T ss_pred CCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHH-cCCCceEEECchhh
Confidence 3468999999999998877654 445999999999999999998643 24568999999654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=5.1e-05 Score=79.11 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=76.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh----------cCCCCCCCeEEEEccHHHHHHhhcc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY----------FGFTQDKSLKVHITDGIKFVREMKS 597 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~----------Fgl~~~~rl~v~i~Da~~~l~~~~~ 597 (759)
.....||.||.|.|.+...+....+..++.+||++|.++++|++. +|+. ..+++++.+|+.+.--...
T Consensus 150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~-~~~i~~~~gd~~~~~~~~~- 227 (328)
T d1nw3a_ 150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK-HAEYTLERGDFLSEEWRER- 227 (328)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEEEECCTTSHHHHHH-
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc-CCceEEEECcccccccccc-
Confidence 445689999999999999998888887899999999999999764 3553 4679999999865321110
Q ss_pred cCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 598 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
-...|+|++- +-- -.+.+ ...|..+.+.|+|||.+|..
T Consensus 228 ------------------------------~~~advi~~~--~~~-------f~~~~--~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 228 ------------------------------IANTSVIFVN--NFA-------FGPEV--DHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp ------------------------------HHHCSEEEEC--CTT-------TCHHH--HHHHHHHHTTCCTTCEEEES
T ss_pred ------------------------------cCcceEEEEc--cee-------cchHH--HHHHHHHHHhCCCCcEEEEe
Confidence 0135888872 110 01111 46788889999999998863
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=0.00027 Score=68.53 Aligned_cols=137 Identities=10% Similarity=0.011 Sum_probs=94.4
Q ss_pred CCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeecccCC--CcccEEEeCCCChh
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ--GGLDALMEPELGHK 143 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~-~~~i~f~~~D~~~~~--gtfD~Ii~~~~~~~ 143 (759)
++.+|||+|+|.|.-+..++-... .+++.+|.+..-+...++-...- -.++++++..+++.. ..||+|++-....
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~~- 143 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFAS- 143 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSSS-
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhcC-
Confidence 356999999999999998886544 37999999998887776655443 357999999999886 6899999966432
Q ss_pred HHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEE-EEeCCCCCCCCCceEEEEEEEeCC
Q 004354 144 LGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV-HAIPQKSSSEPSLQTFMVVADKEN 212 (759)
Q Consensus 144 ~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~-~~~~~~~~~~~~~~~f~~v~~K~~ 212 (759)
...+++-+...+++||++++.--. ....++- ....+|.+.. +.+... ...-...+++++|.+
T Consensus 144 -~~~ll~~~~~~l~~~g~~~~~KG~--~~~eEl~-~~~~~~~~~~~~~~~~p---~~~~~R~iv~ikk~k 206 (207)
T d1jsxa_ 144 -LNDMVSWCHHLPGEQGRFYALKGQ--MPEDEIA-LLPEEYQVESVVKLQVP---ALDGERHLVVIKANK 206 (207)
T ss_dssp -HHHHHHHHTTSEEEEEEEEEEESS--CCHHHHH-TSCTTEEEEEEEEEECC-----CCEEEEEEEEECC
T ss_pred -HHHHHHHHHHhcCCCcEEEEECCC--CHHHHHH-hhhcCCEEEEEEEecCC---CCCCcEEEEEEEecc
Confidence 677889999999999999988632 2222222 2234786643 232221 122344566666643
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.63 E-value=8.9e-05 Score=70.60 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=79.2
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 531 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 531 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.+||.+-.|+|++..-....- ...++.||.|+..+++.++.+ ++ .+....++..|..+++....
T Consensus 45 ~~vLDlFaGsG~~glEalSRG-A~~v~fVE~~~~a~~~ik~Ni~~l~~-~~~~~~~~~~d~~~~l~~~~----------- 111 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKC-SSEQAEVINQSSLDFLKQPQ----------- 111 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTC-CTTTEEEECSCHHHHTTSCC-----------
T ss_pred ceEeecccCccceeeeeeeec-ceeeEEeecccchhhhHhhHHhhhcc-cccccccccccccccccccc-----------
Confidence 589999999999987666553 349999999999999999886 44 34578999999999876543
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-ChHHHHHHHHH--ccCcCcEEEEEec
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKD--ALSEQGLFIVNLV 678 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-~~~~fl~~~~~--~L~~~Gilv~N~~ 678 (759)
...+||+|++|. |-.. .....|..+.+ .|+++|++++-..
T Consensus 112 -------------------~~~~fDlIFlDP------------PY~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 112 -------------------NQPHFDVVFLDP------------PFHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp -------------------SSCCEEEEEECC------------CSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -------------------cCCcccEEEech------------hHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 135799999964 3221 24567777755 6899999998653
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.63 E-value=4.9e-05 Score=73.38 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=45.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHH
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI 589 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~ 589 (759)
..++||.+|+|+|.++..+... +..+|++||+|+..+++|++.. +++.++.+|..
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~ 102 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNC-----GGVNFMVADVS 102 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGG
T ss_pred CCCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHcc-----ccccEEEEehh
Confidence 3579999999999998766665 3448999999999999999986 35899999964
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=0.0002 Score=79.31 Aligned_cols=163 Identities=10% Similarity=0.094 Sum_probs=106.2
Q ss_pred ccccchhhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh----C---------------CCeEEEEeCCHHHHH
Q 004354 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G---------------FHGITNVDFSKVVIS 105 (759)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~----G---------------~~~VtgIDiS~~~I~ 105 (759)
++|.+ ..+...+..++.. .++.+|+|..||+|.+....++. . ...++|+|+++.+..
T Consensus 145 qfyTP-~~Iv~~mv~ll~~---~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~ 220 (524)
T d2ar0a1 145 QYFTP-RPLIKTIIHLLKP---QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 220 (524)
T ss_dssp CCCCC-HHHHHHHHHHHCC---CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred hhccc-cchhHhhhhcccC---ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHH
Confidence 34443 5567777777764 56789999999999999776542 1 114899999999988
Q ss_pred HHHHHhccCCCC------cEEEEeecccCC----CcccEEEeCCCCh----------------hHHHHHHHHHHHhcccC
Q 004354 106 DMLRRNVRDRSD------MRWRVMDMTSMQ----GGLDALMEPELGH----------------KLGNQYLSEVKRLLKSG 159 (759)
Q Consensus 106 ~a~~r~~~~~~~------i~f~~~D~~~~~----gtfD~Ii~~~~~~----------------~~~~~~l~ei~rvLkpG 159 (759)
.++-++.-++.. -.+...|..... ..||+|++++..- ..-..++..+.+.|++|
T Consensus 221 la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g 300 (524)
T d2ar0a1 221 LALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 300 (524)
T ss_dssp HHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc
Confidence 776654322211 233444433322 6799999976210 01345899999999999
Q ss_pred cEEEEEEcC-----c---hhhhhhhccccCCCceEEEEEeCCCCCCCCCceEEEEEEEeCCCc
Q 004354 160 GKFVCLTLA-----E---SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSS 214 (759)
Q Consensus 160 G~liiit~~-----~---~~~~~~l~~~~~~~w~v~~~~~~~~~~~~~~~~~f~~v~~K~~~~ 214 (759)
|++.++... . ..+++.+++. .+...+..++..--...+.+..+++++|.++.
T Consensus 301 Gr~aiIlP~~~Lf~~~~~~~iR~~Ll~~---~~i~aII~LP~~~F~~t~i~t~Il~l~K~k~~ 360 (524)
T d2ar0a1 301 GRAAVVVPDNVLFEGGKGTDIRRDLMDK---CHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 360 (524)
T ss_dssp EEEEEEEEHHHHHCCTHHHHHHHHHHHH---EEEEEEEECCSSCSSSCSCCEEEEEEEEBCSS
T ss_pred CcEEEEEehHHhhhhhhhHHHHHHHHHc---CCceEEEECCCCcCCCCCCCeEEEEEECCCCC
Confidence 998888632 1 1344444443 34455666654332356789999999998754
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=0.00011 Score=73.59 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=59.0
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~ 129 (759)
.+...+...+.. .+++.|||||||.|.++..|++.+. +|++||+++.+++..+++. ...++++++.+|+.++.
T Consensus 8 ~~~~~Iv~~~~~---~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~-~~~~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 8 FVIDSIVSAINP---QKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHP-FLGPKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHCC---CTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCT-TTGGGEEEECSCGGGCC
T ss_pred HHHHHHHHhcCC---CCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHh-hhccchhHHhhhhhhhc
Confidence 344556666654 5788999999999999999998865 5999999999998887654 23468999999999876
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.57 E-value=0.0001 Score=73.58 Aligned_cols=122 Identities=14% Similarity=0.106 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcc-cCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeE
Q 004354 504 SSYHMGIISGFTLISSYLESVAS-VGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK 582 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~-~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~ 582 (759)
-.|+++|.+.-......+..... -....+||.||+|.|.+...+.+.+|.++++++|+ |.+++.+ + ..+|++
T Consensus 55 ~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~--~~~ri~ 127 (244)
T d1fp1d2 55 QIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA----P--PLSGIE 127 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----C--CCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc----C--CCCCeE
Confidence 44778886533332222222222 24568999999999999999999999999999999 6665432 2 357999
Q ss_pred EEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHH
Q 004354 583 VHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLT 662 (759)
Q Consensus 583 v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~ 662 (759)
++.+|..+ . ....|++++ ....... |.. -....|++
T Consensus 128 ~~~gd~~~---~---------------------------------~p~~D~~~l----~~vLh~~--~de--~~~~iL~~ 163 (244)
T d1fp1d2 128 HVGGDMFA---S---------------------------------VPQGDAMIL----KAVCHNW--SDE--KCIEFLSN 163 (244)
T ss_dssp EEECCTTT---C---------------------------------CCCEEEEEE----ESSGGGS--CHH--HHHHHHHH
T ss_pred EecCCccc---c---------------------------------cccceEEEE----ehhhhhC--CHH--HHHHHHHH
Confidence 99999532 1 134588887 1100000 000 12467899
Q ss_pred HHHccCcCcEEEEE
Q 004354 663 VKDALSEQGLFIVN 676 (759)
Q Consensus 663 ~~~~L~~~Gilv~N 676 (759)
+++.|+|||.+++.
T Consensus 164 ~~~aL~pgg~llI~ 177 (244)
T d1fp1d2 164 CHKALSPNGKVIIV 177 (244)
T ss_dssp HHHHEEEEEEEEEE
T ss_pred HHHHcCCCcEEEEE
Confidence 99999999966553
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.55 E-value=0.00016 Score=77.14 Aligned_cols=62 Identities=15% Similarity=-0.006 Sum_probs=50.0
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh
Q 004354 500 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 572 (759)
Q Consensus 500 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~ 572 (759)
+.|..+....|+.-+.+ ....++|.||+|.|.++..+...+|..++++||+++.++++|++.
T Consensus 198 GEl~~~~i~~Il~~l~L-----------kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~ 259 (406)
T d1u2za_ 198 GELLPNFLSDVYQQCQL-----------KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQ 259 (406)
T ss_dssp CCBCHHHHHHHHHHTTC-----------CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCC-----------CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Confidence 45666666666655433 344689999999999999999888877999999999999999864
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.00034 Score=70.83 Aligned_cols=98 Identities=12% Similarity=0.217 Sum_probs=72.6
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ 129 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~ 129 (759)
.+...+...+.. .+++.|||||||.|.++..|++.+. +|+++++++.+++..+++.... ..+++++.+|+....
T Consensus 8 ~i~~kIv~~~~~---~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~ 83 (278)
T d1zq9a1 8 LIINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 83 (278)
T ss_dssp HHHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHhCC---CCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh
Confidence 344455555543 5788999999999999999999975 6999999999999998876443 257899999998877
Q ss_pred -CcccEEEeCCCChhHHHHHHHHHHH
Q 004354 130 -GGLDALMEPELGHKLGNQYLSEVKR 154 (759)
Q Consensus 130 -gtfD~Ii~~~~~~~~~~~~l~ei~r 154 (759)
..++.|+++ .+......++..+..
T Consensus 84 ~~~~~~vV~N-LPY~Iss~il~~~~~ 108 (278)
T d1zq9a1 84 LPFFDTCVAN-LPYQISSPFVFKLLL 108 (278)
T ss_dssp CCCCSEEEEE-CCGGGHHHHHHHHHH
T ss_pred hhhhhhhhcc-hHHHHHHHHHHHHHh
Confidence 556667664 334444555554443
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.48 E-value=0.00015 Score=76.69 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=82.7
Q ss_pred CCCeEEEEcccccHHHH-HHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCC------------CCCCeEEEEccHHHHH
Q 004354 529 KSVKAVVIGLGAGLLPM-FLHECMPFVGIEAVELDLTMLNLAEDYF---GFT------------QDKSLKVHITDGIKFV 592 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~-~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~------------~~~rl~v~i~Da~~~l 592 (759)
++.+||....|+|+... ++.+. +..+|+++|+||..++.+++.+ +.. ....+.+...|+..++
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 46799999999998876 55544 5669999999999999999987 221 1346889999999998
Q ss_pred HhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcE
Q 004354 593 REMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGL 672 (759)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gi 672 (759)
.+.. .+||+|.+|.|.+ | ..||+.+.+.++.||+
T Consensus 124 ~~~~--------------------------------~~fDvIDiDPfGs--------~------~pfldsAi~a~~~~Gl 157 (375)
T d2dula1 124 AERH--------------------------------RYFHFIDLDPFGS--------P------MEFLDTALRSAKRRGI 157 (375)
T ss_dssp HHST--------------------------------TCEEEEEECCSSC--------C------HHHHHHHHHHEEEEEE
T ss_pred Hhhc--------------------------------CcCCcccCCCCCC--------c------HHHHHHHHHHhccCCE
Confidence 7643 6799999988765 2 5699999999999999
Q ss_pred EEEEe
Q 004354 673 FIVNL 677 (759)
Q Consensus 673 lv~N~ 677 (759)
|.+-.
T Consensus 158 l~vTa 162 (375)
T d2dula1 158 LGVTA 162 (375)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99774
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.48 E-value=0.00011 Score=72.68 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=74.2
Q ss_pred Cccccccch----hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHh----CC-CeEEEEeCCHHHHHHHHHHhc
Q 004354 42 DSFEWYAEW----PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----GF-HGITNVDFSKVVISDMLRRNV 112 (759)
Q Consensus 42 ~~~eW~~~~----~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~----G~-~~VtgIDiS~~~I~~a~~r~~ 112 (759)
..|.|.+.. +.-...+.+++.. .++.+|||+|++.|.-+..+++. +. .+|+++|+.+..... ..
T Consensus 53 ~~~~w~G~p~~k~p~d~~~~~eli~~---~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~----~~ 125 (232)
T d2bm8a1 53 SPYQWRGLRMLKDPDTQAVYHDMLWE---LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI----PA 125 (232)
T ss_dssp SCCEETTEECCSCHHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC----CG
T ss_pred cCccccceecccCHHHHHHHHHHHHH---hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh----hh
Confidence 345676543 2222344455543 24679999999999877655432 32 369999998743221 12
Q ss_pred cCCCCcEEEEeecccCC-------CcccEEEeCCCChhH-HHHHHHHHHHhcccCcEEEEEEc
Q 004354 113 RDRSDMRWRVMDMTSMQ-------GGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 113 ~~~~~i~f~~~D~~~~~-------gtfD~Ii~~~~~~~~-~~~~l~ei~rvLkpGG~liiit~ 167 (759)
....+++++++|..+.. ..+|.|+........ ...-+ +...+|++||++++-..
T Consensus 126 ~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 126 SDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred ccccceeeeecccccHHHHHHHHhcCCCEEEEcCCcchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 23468999999987654 468888875532222 22223 35689999999998764
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.48 E-value=0.00019 Score=71.14 Aligned_cols=139 Identities=15% Similarity=0.074 Sum_probs=92.8
Q ss_pred CCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC------CcccEEEeCC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ------GGLDALMEPE 139 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~------gtfD~Ii~~~ 139 (759)
...+|+|+|+|.|.-+.-|+=. .-.+++.+|.+..=+...+.-... .-.++.+++..++++. +.||+|++-.
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 4679999999999999888753 334799999999877665554333 3467888888776653 6899999965
Q ss_pred CChhHHHHHHHHHHHhcccCcEEEEEEcCchhhhhhhccc---c-CCCceE---EEEEeCCCCCCCCCceEEEEEEEeCC
Q 004354 140 LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPK---F-RFGWKM---SVHAIPQKSSSEPSLQTFMVVADKEN 212 (759)
Q Consensus 140 ~~~~~~~~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~---~-~~~w~v---~~~~~~~~~~~~~~~~~f~~v~~K~~ 212 (759)
.. ....++.-+...+++||++++.--.. ...++-.. . ..++.+ ..+.++. ..-...+++++|.+
T Consensus 150 va--~l~~ll~~~~~~l~~~g~~i~~KG~~--~~~El~~a~~~~~~~~~~~~~v~~~~lp~-----~~~~r~lv~i~K~~ 220 (239)
T d1xdza_ 150 VA--RLSVLSELCLPLVKKNGLFVALKAAS--AEEELNAGKKAITTLGGELENIHSFKLPI-----EESDRNIMVIRKIK 220 (239)
T ss_dssp CS--CHHHHHHHHGGGEEEEEEEEEEECC---CHHHHHHHHHHHHHTTEEEEEEEEEECTT-----TCCEEEEEEEEECS
T ss_pred hh--CHHHHHHHHhhhcccCCEEEEECCCC--hHHHHHHHHHHHHHcCCEEEEEEEEeCCC-----CCCCEEEEEEEECC
Confidence 33 26789999999999999998876321 12222111 1 124433 2233332 23456777888877
Q ss_pred Ccc
Q 004354 213 SSV 215 (759)
Q Consensus 213 ~~~ 215 (759)
..|
T Consensus 221 ~~p 223 (239)
T d1xdza_ 221 NTP 223 (239)
T ss_dssp CCC
T ss_pred CCC
Confidence 665
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.41 E-value=8.9e-05 Score=73.54 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=53.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
....+||.||.|.|+|+..|.... .+|++||+|+.+++..++.|. ..++++++.+|++++
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~~ 79 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQF 79 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGC
T ss_pred CCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhh--cccchhhhhhhhhhc
Confidence 466799999999999999999873 589999999999999998874 367999999999886
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=4e-05 Score=76.12 Aligned_cols=138 Identities=13% Similarity=0.061 Sum_probs=75.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcc------
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSAT------ 601 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~------ 601 (759)
.+..+||.||+|.|.++.++.... ..+|+++|+++.+++.|+++..- ....+...+..+++.........
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKK---EPGAYDWTPAVKFACELEGNSGRWEEKEE 125 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHT---CTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhh---ccccchhhhHHHHHHHhccccchHHHHHH
Confidence 345689999999998876665542 34899999999999999998732 22233333444444332200000
Q ss_pred ---cccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 602 ---DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 602 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
..+..... .....+... .......||+|+.- +.-.. + ++..---..+++++.+.|+|||.|++..+
T Consensus 126 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~fD~i~~~-~~l~~---~--~~~~~~~~~~l~~i~~~LkpGG~li~~~~ 194 (257)
T d2a14a1 126 KLRAAVKRVLK----CDVHLGNPL-APAVLPLADCVLTL-LAMEC---A--CCSLDAYRAALCNLASLLKPGGHLVTTVT 194 (257)
T ss_dssp HHHHHEEEEEE----CCTTSSSTT-TTCCCCCEEEEEEE-SCHHH---H--CSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHhhhhhcccc----ccccccccc-ccccCCcccEEeeh-hhHHH---h--cccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence 00000000 000001110 02235679999861 11000 0 00000114689999999999999998655
Q ss_pred CC
Q 004354 679 SR 680 (759)
Q Consensus 679 ~~ 680 (759)
..
T Consensus 195 ~~ 196 (257)
T d2a14a1 195 LR 196 (257)
T ss_dssp SS
T ss_pred cc
Confidence 43
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.29 E-value=0.00015 Score=71.67 Aligned_cols=100 Identities=14% Similarity=0.218 Sum_probs=64.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHh----CCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHH--HHHhhcccCcc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHEC----MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK--FVREMKSSSAT 601 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~----~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~--~l~~~~~~~~~ 601 (759)
-+|.+||.||.+.|..+.++... .+..+|.+||+|+.....+.. ..++++++.+|..+ .+....
T Consensus 79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~-----~~~~I~~i~gDs~~~~~~~~l~----- 148 (232)
T d2bm8a1 79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----DMENITLHQGDCSDLTTFEHLR----- 148 (232)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----GCTTEEEEECCSSCSGGGGGGS-----
T ss_pred hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc-----cccceeeeecccccHHHHHHHH-----
Confidence 46889999999988555544433 356799999999865443322 35789999999643 222221
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 602 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
...+|+||+|-+... ...+ .++ .....|++||++|+
T Consensus 149 --------------------------~~~~dlIfID~~H~~--------~~v~--~~~--~~~~lLk~GG~iIv 184 (232)
T d2bm8a1 149 --------------------------EMAHPLIFIDNAHAN--------TFNI--MKW--AVDHLLEEGDYFII 184 (232)
T ss_dssp --------------------------SSCSSEEEEESSCSS--------HHHH--HHH--HHHHTCCTTCEEEE
T ss_pred --------------------------hcCCCEEEEcCCcch--------HHHH--HHH--HHhcccCcCCEEEE
Confidence 245899999864321 1111 222 24578999999887
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.27 E-value=0.00019 Score=71.42 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=46.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHH
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI 589 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~ 589 (759)
....+||.||+|.|.+...+.+.+|..++++.|+ |.|++.| ...+|++++.+|..
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~------~~~~rv~~~~gD~f 133 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL------SGSNNLTYVGGDMF 133 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC------CCBTTEEEEECCTT
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC------cccCceEEEecCcc
Confidence 3457899999999999999999999999999999 6666543 24689999999953
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00057 Score=69.45 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=77.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----CcccEEEeCC-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----GGLDALMEPE- 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----gtfD~Ii~~~- 139 (759)
.++.+|||+.+|.|.=+.+|++.+. ..|+++|+++.=++.+++++...+.+....+.+..... +.||.|++..
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEecc
Confidence 6789999999999999999988744 36999999999999888887666555444444333222 6799999732
Q ss_pred ---C-------------C-------hhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 140 ---L-------------G-------HKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 140 ---~-------------~-------~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
. . .....++|..+.+.|||||+++..|.+
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 0 0 011678889999999999999999875
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.0011 Score=67.30 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=98.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+||.+..|-|+=+..|.....+..|+++|+++.-+...++.+ |+ +.+.++..|+. ......
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~---~~~~~~~~~~~-~~~~~~-------- 168 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM---KATVKQGDGRY-PSQWCG-------- 168 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEEECCTTC-THHHHT--------
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc---cceeeeccccc-cchhcc--------
Confidence 4557999999999988888888887789999999999988888765 54 23444444432 222221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC--------------ChHHHHHHHHHccCcC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQ 670 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f--------------~~~~fl~~~~~~L~~~ 670 (759)
...||.|++|+-.+.. |+.--.+.. +..+.|..+.+.|+||
T Consensus 169 -----------------------~~~fd~IL~DaPCSg~--G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g 223 (284)
T d1sqga2 169 -----------------------EQQFDRILLDAPCSAT--GVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG 223 (284)
T ss_dssp -----------------------TCCEEEEEEECCCCCG--GGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred -----------------------cccccEEEEecccccc--CccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3579999999966532 221112221 2677888899999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhcCceEEE
Q 004354 671 GLFIVNLVSRSQATKDMVISRMKMVFNHLFCL 702 (759)
Q Consensus 671 Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~ 702 (759)
|.+|.-.-+-..+.-+.+++.+.+-++....+
T Consensus 224 G~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~~ 255 (284)
T d1sqga2 224 GTLVYATCSVLPEENSLQIKAFLQRTADAELC 255 (284)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHHHCTTCEEC
T ss_pred ceEEEeeecCchhhCHHHHHHHHHhCCCcEEe
Confidence 99999887778777788888887777765443
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.00011 Score=73.92 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=37.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 574 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg 574 (759)
....++|.||.|.|.++.++.... ..+|+++|+++.+++.|+++..
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~ 98 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQ 98 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHT
T ss_pred CCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHh
Confidence 356799999999998775444332 2489999999999999999985
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.09 E-value=0.0012 Score=68.04 Aligned_cols=102 Identities=14% Similarity=0.029 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeecccCC---CcccEEEeCC-
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQ---GGLDALMEPE- 139 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G--~~~VtgIDiS~~~I~~a~~r~~~-~~~~i~f~~~D~~~~~---gtfD~Ii~~~- 139 (759)
.++.+|||+.||.|.=+.++++.. -..+++.|+++.-++.++++..+ ...++.....|...+. +.||.|++..
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 194 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEccc
Confidence 688999999999999988887652 23599999999999888777644 3456777777877665 7899999732
Q ss_pred ---C-------------Ch-------hHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 140 ---L-------------GH-------KLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 140 ---~-------------~~-------~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
. .. ....+++.+..+.|||||+++..|.+
T Consensus 195 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 0 00 11677888999999999999999875
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.07 E-value=0.00073 Score=71.28 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=73.5
Q ss_pred CCCeEEEECCCcchhHHHHHH-hCCCeEEEEeCCHHHHHHHHHHhccCC----------------CCcEEEEeecccCC-
Q 004354 68 PPPQILVPGCGNSRLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDR----------------SDMRWRVMDMTSMQ- 129 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~-~G~~~VtgIDiS~~~I~~a~~r~~~~~----------------~~i~f~~~D~~~~~- 129 (759)
.+.+|||..||+|..+...+. .|...|++.|+|+.+++.+++++..+. ..+.+.+.|+....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 357999999999999996654 577789999999999999988764321 12455666654332
Q ss_pred ---CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 130 ---GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 130 ---gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
..||+|...+.. ....++..+.+.++.||.+.+..
T Consensus 125 ~~~~~fDvIDiDPfG--s~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDPFG--SPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECCSS--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCCCCC--CcHHHHHHHHHHhccCCEEEEEe
Confidence 579999997633 24678999999999998877664
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.07 E-value=0.00084 Score=64.11 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=36.0
Q ss_pred CCCCeEEEEccccc----HHHHHHHHhCC----CCcEEEEEcCHHHHHHHHh
Q 004354 528 GKSVKAVVIGLGAG----LLPMFLHECMP----FVGIEAVELDLTMLNLAED 571 (759)
Q Consensus 528 ~~~~~vLviGlG~G----~l~~~L~~~~p----~~~i~~VEiDp~v~~vA~~ 571 (759)
+.+.||+.+|+|+| ++++.|.+..+ ..+|.+.|||+.+++.|++
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~ 74 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS 74 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence 56789999999999 47777776532 2479999999999999974
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.0021 Score=65.34 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=75.2
Q ss_pred CCCCeEEEECCCcchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecccCC------CcccEEEe
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ------GGLDALME 137 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~--G~~~VtgIDiS~~~I~~a~~r~~~~~-~~i~f~~~D~~~~~------gtfD~Ii~ 137 (759)
.++.+|||+.||.|.=+.+|++. +-..|+++|+++.=++.+++++.+.+ .++.+...|...+. +.||.|++
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence 67889999999999999888764 23469999999999988888875543 57888889987764 67999997
Q ss_pred CC----CC--------h----------h-H---HHHHHHHHHHhcccCcEEEEEEcC
Q 004354 138 PE----LG--------H----------K-L---GNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 138 ~~----~~--------~----------~-~---~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
.. .. . . . ...++..+. .|+|||+++..|.+
T Consensus 173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCS 228 (293)
T d2b9ea1 173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCS 228 (293)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESC
T ss_pred cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeecc
Confidence 42 00 0 0 0 233444555 47899999999875
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=96.97 E-value=0.0012 Score=67.97 Aligned_cols=142 Identities=15% Similarity=0.037 Sum_probs=85.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-----CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM-----PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATD 602 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~-----p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~ 602 (759)
....+||..|+|+|++...+...+ +...+.++|+|+.++.+|+....+. .....+..+|....
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~----------- 183 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-RQKMTLLHQDGLAN----------- 183 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-TCCCEEEESCTTSC-----------
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh-hhhhhhhccccccc-----------
Confidence 455789999999998877665432 3447999999999999999876442 33456677664321
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCC-C-------CCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSP-D-------SSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~-d-------~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
....+||+||.+..=+ . ...............-|++.+.+.|+|+|.++
T Consensus 184 -----------------------~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 240 (328)
T d2f8la1 184 -----------------------LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 240 (328)
T ss_dssp -----------------------CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred -----------------------cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceE
Confidence 1236899999864211 0 00000001122235569999999999999666
Q ss_pred EEecCC--ChhHHHHHHHHHHHhcCceEEEee
Q 004354 675 VNLVSR--SQATKDMVISRMKMVFNHLFCLQL 704 (759)
Q Consensus 675 ~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~~ 704 (759)
+=+... .......+-+.|.+.|.-...+..
T Consensus 241 ~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~l 272 (328)
T d2f8la1 241 FLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKL 272 (328)
T ss_dssp EEEEGGGGGSTTHHHHHHHHHHHEEEEEEEEC
T ss_pred EEecCccccCchhHHHHHHHHhCCcEEEEEEC
Confidence 544221 112223344555666654444443
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.91 E-value=0.0029 Score=64.97 Aligned_cols=131 Identities=16% Similarity=0.184 Sum_probs=95.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~ 604 (759)
...+||.+..|.|+=+..|...+. ...|+++|+++.-+...++.+ |. .++.++..|+..+ ...
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~---~~i~~~~~d~~~~-~~~--------- 182 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHI-GEL--------- 182 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGG-GGG---------
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh---hcccccccccccc-ccc---------
Confidence 446899999999988888887765 458999999999998887665 54 4577788887665 111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCC--------------CChHHHHHHHHHccCcC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD--------------FVEGSFLLTVKDALSEQ 670 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~--------------f~~~~fl~~~~~~L~~~ 670 (759)
...||.|++|+-.+.. |+.--.+. -+..+.|..+...|+||
T Consensus 183 -----------------------~~~fD~ILvDaPCSg~--G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~g 237 (313)
T d1ixka_ 183 -----------------------NVEFDKILLDAPCTGS--GTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG 237 (313)
T ss_dssp -----------------------CCCEEEEEEECCTTST--TTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred -----------------------cccccEEEEccccccC--CceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCC
Confidence 3679999999976532 22111111 12567778888999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhcC
Q 004354 671 GLFIVNLVSRSQATKDMVISRMKMVFN 697 (759)
Q Consensus 671 Gilv~N~~~~~~~~~~~v~~~l~~vF~ 697 (759)
|.+|.-.-+-..+.-+.++..+.+.++
T Consensus 238 G~lVYsTCSl~~eENE~VV~~~L~~~~ 264 (313)
T d1ixka_ 238 GILVYSTCSLEPEENEFVIQWALDNFD 264 (313)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred cEEEEeeccCChHhHHHHHHHHHhcCC
Confidence 999998877777777788888777664
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.89 E-value=0.0013 Score=62.38 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=80.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.....++...+|+|.-+..+.+. +.+|.++|.||+++..|++.+ .+++.+++++--++-.....
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~----~~~~~~~~~~f~~~~~~l~~---------- 80 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLH----LPGLTVVQGNFRHLKRHLAA---------- 80 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTC----CTTEEEEESCGGGHHHHHHH----------
T ss_pred CCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhcc----ccceeEeehHHHHHHHHHHH----------
Confidence 34567999999999888877775 459999999999999998853 57899999886665433321
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCC-ChHHHHHHHHHccCcCcEEEEEec
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f-~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
.....+|.|++|+--+ +..+--|...| .....|....+.|+++|.+++...
T Consensus 81 ------------------~~~~~vdgIl~DLGvS--s~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 81 ------------------LGVERVDGILADLGVS--SFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp ------------------TTCSCEEEEEEECSCC--HHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ------------------cCCCccCEEEEEccCC--HHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 1136799999998221 11111112222 123478888999999998887764
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00027 Score=70.63 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=51.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
.....||.||.|.|+|+..|.... .++++||+|+.+++..++.|.. .++++++.+|++++
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~--~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTF 79 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGC
T ss_pred CCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhh--ccchhHHhhhhhhh
Confidence 345789999999999999998763 5899999999999999887643 57999999999975
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.004 Score=63.28 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=94.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 603 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~l~~~~~~~~~~~ 603 (759)
....+||.+..|-|+-+..|...+. ...|+++|+++.-++..++.+ |+ .++++...|+..+-....
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~---~~~~~~~~d~~~~~~~~~------- 162 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV---SCCELAEEDFLAVSPSDP------- 162 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGGSCTTCG-------
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc---cceeeeehhhhhhccccc-------
Confidence 3456899999999988777777653 568999999999999888876 54 468999999876522211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcC-CC-------------CC--ChHHHHHHHHHcc
Q 004354 604 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AA-------------DF--VEGSFLLTVKDAL 667 (759)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scP-p~-------------~f--~~~~fl~~~~~~L 667 (759)
...+||.|++|+-.+.. |+.-. |. .+ ++...|..+. .|
T Consensus 163 -----------------------~~~~fD~VL~DaPCSg~--G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l 216 (293)
T d2b9ea1 163 -----------------------RYHEVHYILLDPSCSGS--GMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TF 216 (293)
T ss_dssp -----------------------GGTTEEEEEECCCCCC--------------------CCHHHHHHHHHHHHHHHT-TC
T ss_pred -----------------------ccceeeEEeecCcccch--hhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hc
Confidence 12579999999965532 22111 11 01 1233444444 47
Q ss_pred CcCcEEEEEecCCChhHHHHHHHHHHHhcCceEEE
Q 004354 668 SEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCL 702 (759)
Q Consensus 668 ~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~ 702 (759)
++||.||.-.-+-..+.-+.+++.+-+-++..+.+
T Consensus 217 ~~gG~lvYsTCSl~~~ENe~vV~~~L~~~~~~~~l 251 (293)
T d2b9ea1 217 PSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRL 251 (293)
T ss_dssp TTCCEEEEEESCCCGGGTHHHHHHHHTTSTTTEEE
T ss_pred ccccEEEEeeccCChhHhHHHHHHHHHhCCCCEEe
Confidence 89999998887777777788888887777654443
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=96.75 E-value=0.00019 Score=71.59 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=52.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
....+||.||.|.|+|+..|.+.. .+|++||+|+.+++.+++.|+. .++++++.+|++++
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~--~~n~~ii~~D~l~~ 87 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL--NTRVTLIHQDILQF 87 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTT--CSEEEECCSCCTTT
T ss_pred CCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhh--ccchhhhhhhhhcc
Confidence 345689999999999999999873 4899999999999999988863 57899999999876
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.74 E-value=0.0029 Score=58.99 Aligned_cols=98 Identities=21% Similarity=0.223 Sum_probs=66.4
Q ss_pred CCCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+|||+|.|+- .+...+.+.+....|.++|.++.-++.|+++ |. +.-+.....|..+.+++..
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~-Ga--~~~i~~~~~~~~~~i~~~t---------- 93 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL-GA--THVINSKTQDPVAAIKEIT---------- 93 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-TC--SEEEETTTSCHHHHHHHHT----------
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc-CC--eEEEeCCCcCHHHHHHHHc----------
Confidence 45568999998754 3444454555566889999999999999874 64 2212222245666666653
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
+..+|+||--+ + ..+.++.+.+.|+++|.+++
T Consensus 94 ---------------------~gg~D~vid~~--G--------------~~~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 94 ---------------------DGGVNFALEST--G--------------SPEILKQGVDALGILGKIAV 125 (174)
T ss_dssp ---------------------TSCEEEEEECS--C--------------CHHHHHHHHHTEEEEEEEEE
T ss_pred ---------------------CCCCcEEEEcC--C--------------cHHHHHHHHhcccCceEEEE
Confidence 24799988722 1 15688999999999998774
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.65 E-value=0.00082 Score=66.57 Aligned_cols=54 Identities=15% Similarity=0.034 Sum_probs=43.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccH
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG 588 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da 588 (759)
....+||.||+|.|.+..-|.+.+|+.+++++|+- .+++.++ ..+|++...+|-
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~~------~~~r~~~~~~d~ 133 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLP-HVIEDAP------SYPGVEHVGGDM 133 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECT-TTTTTCC------CCTTEEEEECCT
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccH-Hhhhhcc------cCCceEEecccc
Confidence 34578999999999999999999999999999994 4444332 357899999884
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.46 E-value=0.027 Score=55.09 Aligned_cols=126 Identities=12% Similarity=0.169 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHH---HHhhcCCCCCCC
Q 004354 504 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL---AEDYFGFTQDKS 580 (759)
Q Consensus 504 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~v---A~~~Fgl~~~~r 580 (759)
.-|.+-++-++.++.. +. .....+++.||.|+|.=...|.-++|+.+++.||-+.-=+.. +.+..|+ ++
T Consensus 50 ~i~~rHi~DSl~~~~~-~~----~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L---~n 121 (239)
T d1xdza_ 50 EVYLKHFYDSITAAFY-VD----FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL---EN 121 (239)
T ss_dssp HHHHHTHHHHHGGGGT-SC----GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SS
T ss_pred HHHHHhccchhhhhhh-hc----ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC---CC
Confidence 3355556666554432 11 124568999999999555556667899999999999865444 5566788 46
Q ss_pred eEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHH
Q 004354 581 LKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFL 660 (759)
Q Consensus 581 l~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl 660 (759)
+.++.+.+.++-.... ...+||+|+.=+.++- ..++
T Consensus 122 ~~i~~~R~E~~~~~~~------------------------------~~~~~D~v~sRAva~l--------------~~ll 157 (239)
T d1xdza_ 122 TTFCHDRAETFGQRKD------------------------------VRESYDIVTARAVARL--------------SVLS 157 (239)
T ss_dssp EEEEESCHHHHTTCTT------------------------------TTTCEEEEEEECCSCH--------------HHHH
T ss_pred cEEEeehhhhcccccc------------------------------ccccceEEEEhhhhCH--------------HHHH
Confidence 8999998877633211 1367999999665541 6789
Q ss_pred HHHHHccCcCcEEEEEecCCC
Q 004354 661 LTVKDALSEQGLFIVNLVSRS 681 (759)
Q Consensus 661 ~~~~~~L~~~Gilv~N~~~~~ 681 (759)
+.+...|+++|.+++=--...
T Consensus 158 ~~~~~~l~~~g~~i~~KG~~~ 178 (239)
T d1xdza_ 158 ELCLPLVKKNGLFVALKAASA 178 (239)
T ss_dssp HHHGGGEEEEEEEEEEECC-C
T ss_pred HHHhhhcccCCEEEEECCCCh
Confidence 999999999998887654333
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0072 Score=56.80 Aligned_cols=136 Identities=14% Similarity=0.147 Sum_probs=90.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
+..+||.||.+-|+...++.+.. +...|.+||+.|. ..-+...++.+|..+.-......
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~--------- 81 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALL--------- 81 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHH---------
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhh---------
Confidence 45689999999999999888764 4568999998662 23467888888864322111100
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCC----CChHHHHHHHHHccCcCcEEEEEecCCChh
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD----FVEGSFLLTVKDALSEQGLFIVNLVSRSQA 683 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~----f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~ 683 (759)
. .....++|+|+.|.-. +.+ |...- .+ -+....+..+.+.|++||.||+=++...
T Consensus 82 ~----------------~~~~~~~DlVlSD~ap-~~s-g~~~~-d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~-- 140 (180)
T d1ej0a_ 82 E----------------RVGDSKVQVVMSDMAP-NMS-GTPAV-DIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE-- 140 (180)
T ss_dssp H----------------HHTTCCEEEEEECCCC-CCC-SCHHH-HHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST--
T ss_pred h----------------hccCcceeEEEecccc-hhc-ccchh-HHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc--
Confidence 0 0013679999999633 222 21100 00 1233456677788999999999887632
Q ss_pred HHHHHHHHHHHhcCceEEEeec
Q 004354 684 TKDMVISRMKMVFNHLFCLQLE 705 (759)
Q Consensus 684 ~~~~v~~~l~~vF~~v~~~~~~ 705 (759)
....++..|+..|..|..++..
T Consensus 141 ~~~~l~~~l~~~F~~V~~~KP~ 162 (180)
T d1ej0a_ 141 GFDEYLREIRSLFTKVKVRKPD 162 (180)
T ss_dssp THHHHHHHHHHHEEEEEEECCT
T ss_pred cHHHHHHHHHhhcCEEEEECCC
Confidence 2356899999999999999865
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.0014 Score=66.28 Aligned_cols=62 Identities=21% Similarity=0.182 Sum_probs=52.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeEEEEccHHHH
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKF 591 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl-~~~~rl~v~i~Da~~~ 591 (759)
.....||.||-|.|+|+..|.+.. .+|++||+|+.+++..++.|.- ...++++++.+|++++
T Consensus 20 ~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~ 82 (278)
T d1zq9a1 20 RPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 82 (278)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred CCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence 345689999999999999999873 4999999999999999988842 2347899999998765
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.0035 Score=60.38 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=72.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHH---hhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 530 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAE---DYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 530 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~---~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
..+++.||.|+|.=...|.-++|+.+++.||-...=+...+ +-+|+ ++++++.+.+.++ .
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~~----~---------- 128 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL---ENIEPVQSRVEEF----P---------- 128 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC---SSEEEEECCTTTS----C----------
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC---cceeeeccchhhh----c----------
Confidence 46899999999944444555789999999999987555544 45676 4699999876653 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~ 677 (759)
...+||+|+.=++++ -..+++.+...|+++|.+++=-
T Consensus 129 --------------------~~~~fD~V~sRA~~~--------------~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 129 --------------------SEPPFDGVISRAFAS--------------LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --------------------CCSCEEEEECSCSSS--------------HHHHHHHHTTSEEEEEEEEEEE
T ss_pred --------------------cccccceehhhhhcC--------------HHHHHHHHHHhcCCCcEEEEEC
Confidence 135799998855443 1678999999999999988665
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.0096 Score=54.93 Aligned_cols=102 Identities=16% Similarity=0.216 Sum_probs=64.9
Q ss_pred CCCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+|||+|.|+. .+...+.......+|.++|.++.-++.|+++ |. +..+..-..|..+..+....
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~-Ga--~~~~~~~~~~~~~~~~~~~~--------- 92 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI-GA--DLVLQISKESPQEIARKVEG--------- 92 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TC--SEEEECSSCCHHHHHHHHHH---------
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh-CC--cccccccccccccccccccc---------
Confidence 44568999999854 5555666666655899999999999999875 54 21111111233333333220
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+..+|+||- + .+ ....++.+.+.|+++|.+++=
T Consensus 93 -------------------~~g~g~Dvvid-~-~G--------------~~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 93 -------------------QLGCKPEVTIE-C-TG--------------AEASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp -------------------HHTSCCSEEEE-C-SC--------------CHHHHHHHHHHSCTTCEEEEC
T ss_pred -------------------cCCCCceEEEe-c-cC--------------CchhHHHHHHHhcCCCEEEEE
Confidence 01356898776 2 11 156889999999999977753
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.19 E-value=0.0056 Score=58.26 Aligned_cols=115 Identities=15% Similarity=0.067 Sum_probs=72.6
Q ss_pred CCCCeEEEEcccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+|||+|.|+ |.++..+.......+|.++|.++.-++.|+++ |. +.-+.-...|..+.+.+..
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~-Ga--~~~~~~~~~~~~~~i~~~t---------- 90 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-GF--EIADLSLDTPLHEQIAALL---------- 90 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TC--EEEETTSSSCHHHHHHHHH----------
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc-cc--cEEEeCCCcCHHHHHHHHh----------
Confidence 4556999999997 55666666676667999999999999999876 43 1100001245555555543
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
.+..+|++|- +-..+............-..+.|+.+.+.++|+|.+++=
T Consensus 91 --------------------~g~g~D~vid-~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 91 --------------------GEPEVDCAVD-AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp --------------------SSSCEEEEEE-CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred --------------------CCCCcEEEEE-CccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 1356899874 332222111111112223578999999999999977643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.17 E-value=0.0076 Score=56.24 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=63.5
Q ss_pred CCCCeEEEEcccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+|||+|.|+ |.+...+.+.+...+|.++|.++.-++.|++. |. +.-+.....|..++.++...
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga--~~vi~~~~~~~~~~~~~i~~--------- 94 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-GA--DLTLNRRETSVEERRKAIMD--------- 94 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-TC--SEEEETTTSCHHHHHHHHHH---------
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccccccccccc-cc--eEEEeccccchHHHHHHHHH---------
Confidence 3457899999873 56666777776545899999999999999764 53 21111112344444333220
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
...+..+|+||--+-+ ...++.+.+.|+++|.++
T Consensus 95 ------------------~~~~~g~Dvvid~vG~----------------~~~~~~a~~~l~~~G~iv 128 (182)
T d1vj0a2 95 ------------------ITHGRGADFILEATGD----------------SRALLEGSELLRRGGFYS 128 (182)
T ss_dssp ------------------HTTTSCEEEEEECSSC----------------TTHHHHHHHHEEEEEEEE
T ss_pred ------------------hhCCCCceEEeecCCc----------------hhHHHHHHHHhcCCCEEE
Confidence 0013569998752211 235788889999999876
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.12 E-value=0.0058 Score=57.00 Aligned_cols=99 Identities=19% Similarity=0.149 Sum_probs=66.9
Q ss_pred CCCCeEEEEcccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+|||+|.|+ |.+...+.+.+...+|.++|.++.-++.|++ +|. +.-+.....|..+.+.+..
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~-lGa--~~~i~~~~~~~~~~v~~~t---------- 92 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF-YGA--TDILNYKNGHIEDQVMKLT---------- 92 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH-HTC--SEEECGGGSCHHHHHHHHT----------
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh-hCc--cccccccchhHHHHHHHHh----------
Confidence 4557899999986 6667777777655589999999999999987 554 2212222234445555543
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
.+..+|+||-=+.+ .+.++.+.+.|+|+|.+++
T Consensus 93 --------------------~g~G~D~vid~~g~----------------~~~~~~a~~~~~~~G~iv~ 125 (174)
T d1jqba2 93 --------------------NGKGVDRVIMAGGG----------------SETLSQAVKMVKPGGIISN 125 (174)
T ss_dssp --------------------TTSCEEEEEECSSC----------------TTHHHHHHHHEEEEEEEEE
T ss_pred --------------------hccCcceEEEccCC----------------HHHHHHHHHHHhcCCEEEE
Confidence 13569988762211 2467888899999998875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.12 E-value=0.013 Score=53.54 Aligned_cols=96 Identities=15% Similarity=0.213 Sum_probs=63.1
Q ss_pred CCCCeEEEEcccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+|||+|.|+ |.+...+.+.+. .+|.+++.++.-++.|+++ |. +.-+.....|..+.+.+..
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~-Ga--~~~i~~~~~~~~~~~~~~~---------- 91 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKL-GA--SLTVNARQEDPVEAIQRDI---------- 91 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT-TC--SEEEETTTSCHHHHHHHHH----------
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhcc-Cc--cccccccchhHHHHHHHhh----------
Confidence 4456899999874 455566666664 6999999999999999875 54 2222222234445444432
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
..+|.++.+.-+ .+.++.+.+.|+++|.+++
T Consensus 92 ----------------------~g~~~~i~~~~~----------------~~~~~~~~~~l~~~G~iv~ 122 (166)
T d1llua2 92 ----------------------GGAHGVLVTAVS----------------NSAFGQAIGMARRGGTIAL 122 (166)
T ss_dssp ----------------------SSEEEEEECCSC----------------HHHHHHHHTTEEEEEEEEE
T ss_pred ----------------------cCCccccccccc----------------chHHHHHHHHhcCCcEEEE
Confidence 335666653211 4567888999999998875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.08 E-value=0.0073 Score=56.26 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=65.3
Q ss_pred CCCCeEEEECCCc-chhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----------Cccc
Q 004354 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------GGLD 133 (759)
Q Consensus 67 ~~~~~ILDlGCG~-G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----------gtfD 133 (759)
.++.+||-+|||. |.++..+++. |+.+|+++|.++.-++.+++.-. -.++ |..+.. ..+|
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa-----~~~i--~~~~~~~~~~v~~~t~g~G~D 98 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA-----TDIL--NYKNGHIEDQVMKLTNGKGVD 98 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC-----SEEE--CGGGSCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc-----cccc--cccchhHHHHHHHHhhccCcc
Confidence 6889999999997 7778888775 77679999999988877765421 1122 222211 3499
Q ss_pred EEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 134 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 134 ~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+|+..... ...+++..++++|+|+++++.+.
T Consensus 99 ~vid~~g~----~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 99 RVIMAGGG----SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp EEEECSSC----TTHHHHHHHHEEEEEEEEECCCC
T ss_pred eEEEccCC----HHHHHHHHHHHhcCCEEEEEeec
Confidence 99875543 24567778999999999998754
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.89 E-value=0.013 Score=54.48 Aligned_cols=92 Identities=17% Similarity=0.212 Sum_probs=64.2
Q ss_pred CCCCCeEEEECCCc-chhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--------------
Q 004354 66 SSPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------- 129 (759)
Q Consensus 66 ~~~~~~ILDlGCG~-G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------- 129 (759)
..++.+||.+|||. |.++..+++. |+++|+++|.++.-++.+++.- .. . +.|..+..
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lG----a~-~--vi~~~~~~~~~~~~~i~~~~~~ 98 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG----AD-L--TLNRRETSVEERRKAIMDITHG 98 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT----CS-E--EEETTTSCHHHHHHHHHHHTTT
T ss_pred CCCCCEEEEECCCccchhheeccccccccccccccccccccccccccc----ce-E--EEeccccchHHHHHHHHHhhCC
Confidence 36789999999984 6677777765 7778999999999888775531 11 1 11222211
Q ss_pred CcccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 130 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 130 gtfD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
..+|+|+..... ...++...++|++||+++++...
T Consensus 99 ~g~Dvvid~vG~----~~~~~~a~~~l~~~G~iv~~G~~ 133 (182)
T d1vj0a2 99 RGADFILEATGD----SRALLEGSELLRRGGFYSVAGVA 133 (182)
T ss_dssp SCEEEEEECSSC----TTHHHHHHHHEEEEEEEEECCCC
T ss_pred CCceEEeecCCc----hhHHHHHHHHhcCCCEEEEEeec
Confidence 358999875432 24577888999999999887643
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=95.89 E-value=0.0087 Score=62.05 Aligned_cols=123 Identities=9% Similarity=0.052 Sum_probs=84.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
....+||.+-.|.|+++..|.... .+|++||+++..++.|++......-.+++++.+|..+.+....
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~----------- 277 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP----------- 277 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG-----------
T ss_pred CCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhh-----------
Confidence 455789999999999999998763 5899999999999999998644334679999998777654432
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHHH
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 687 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 687 (759)
.....||+||+|.-- .|+ .++++.+.+. +|.=+ +-+.|....+.+.
T Consensus 278 ------------------~~~~~~d~vilDPPR----~G~---------~~~~~~l~~~-~~~~i--vYVSCnp~TlaRD 323 (358)
T d1uwva2 278 ------------------WAKNGFDKVLLDPAR----AGA---------AGVMQQIIKL-EPIRI--VYVSCNPATLARD 323 (358)
T ss_dssp ------------------GGTTCCSEEEECCCT----TCC---------HHHHHHHHHH-CCSEE--EEEESCHHHHHHH
T ss_pred ------------------hhhccCceEEeCCCC----ccH---------HHHHHHHHHc-CCCEE--EEEeCCHHHHHHH
Confidence 113679999996522 232 3567766653 55444 4455666666666
Q ss_pred HHHHHHHhcC
Q 004354 688 VISRMKMVFN 697 (759)
Q Consensus 688 v~~~l~~vF~ 697 (759)
+-..+..-|.
T Consensus 324 l~~l~~~gy~ 333 (358)
T d1uwva2 324 SEALLKAGYT 333 (358)
T ss_dssp HHHHHHTTCE
T ss_pred HHHHHHCCCe
Confidence 4433444454
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.86 E-value=0.026 Score=52.12 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=64.9
Q ss_pred CCCCCCeEEEECCCcc-hhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--------CcccE
Q 004354 65 TSSPPPQILVPGCGNS-RLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------GGLDA 134 (759)
Q Consensus 65 ~~~~~~~ILDlGCG~G-~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--------gtfD~ 134 (759)
+..++.+||-+|||.- .++..+++. |...|+.+|.++.-++.+++.- -..++..+-.+.. +.+|+
T Consensus 25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G-----a~~~i~~~~~~~~~~i~~~t~gg~D~ 99 (174)
T d1f8fa2 25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG-----ATHVINSKTQDPVAAIKEITDGGVNF 99 (174)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT-----CSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC-----CeEEEeCCCcCHHHHHHHHcCCCCcE
Confidence 3478999999999863 345555544 8888999999998888776542 1223322211111 67999
Q ss_pred EEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 135 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 135 Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|+-.... ...++...++++|+|+++++..
T Consensus 100 vid~~G~----~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 100 ALESTGS----PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEECSCC----HHHHHHHHHTEEEEEEEEECCC
T ss_pred EEEcCCc----HHHHHHHHhcccCceEEEEEee
Confidence 9975543 4677888999999999998764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.029 Score=51.53 Aligned_cols=94 Identities=19% Similarity=0.156 Sum_probs=64.5
Q ss_pred CCCCeEEEECCCcch-hHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----------Cccc
Q 004354 67 SPPPQILVPGCGNSR-LSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------GGLD 133 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~-ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----------gtfD 133 (759)
.++.+||-+|||... ++..+++. |+.+|+++|.++.-++.+++.- .. .+...+-.+.. ..+|
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~G----a~-~~~~~~~~~~~~~~~~~~~~~g~g~D 99 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIG----AD-LVLQISKESPQEIARKVEGQLGCKPE 99 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT----CS-EEEECSSCCHHHHHHHHHHHHTSCCS
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhC----Cc-ccccccccccccccccccccCCCCce
Confidence 678899999998644 44445544 8878999999999888776531 11 12222111111 4689
Q ss_pred EEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 134 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 134 ~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+++..... ...++...+.+++||+++++....
T Consensus 100 vvid~~G~----~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 100 VTIECTGA----EASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp EEEECSCC----HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred EEEeccCC----chhHHHHHHHhcCCCEEEEEecCC
Confidence 99886543 457888899999999999887543
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.76 E-value=0.0052 Score=60.33 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=63.1
Q ss_pred CCCCeEEEECCCcchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHh-ccCCCC-cEEEE-eecccCC-CcccEEEeCCCC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRN-VRDRSD-MRWRV-MDMTSMQ-GGLDALMEPELG 141 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G-~~~VtgIDiS~~~I~~a~~r~-~~~~~~-i~f~~-~D~~~~~-gtfD~Ii~~~~~ 141 (759)
.+..+|+|+|||.|..+..++... ...+.|+|+--.. .+.-.. .....+ +++.. .|+..++ +..|.|+|.-..
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~--~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D~vlcDm~e 142 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG--HEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGE 142 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT--SCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc--ccCCccccccccccccchhhhhHHhcCCCcCCEEEeeCCC
Confidence 578899999999999999998763 2347777763110 000000 000111 23332 2344444 889999996421
Q ss_pred --------hhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 142 --------HKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 142 --------~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
+....+.++-+.+.|+|||.|++=.+.+
T Consensus 143 ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p 178 (257)
T d2p41a1 143 SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 178 (257)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence 1124467788889999999999887773
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.71 E-value=0.029 Score=51.33 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=63.8
Q ss_pred CCCCeEEEECCC-cchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cc
Q 004354 67 SPPPQILVPGCG-NSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GG 131 (759)
Q Consensus 67 ~~~~~ILDlGCG-~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gt 131 (759)
+++.+||.+||| .|.++..+++. |. +|+++|.++.-++.+++.- .... ...|-.... +.
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~g----a~~~-~~~~~~~~~~~~~~~~~~~~~g~g 98 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCG----ADVT-LVVDPAKEEESSIIERIRSAIGDL 98 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT----CSEE-EECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcC----CcEE-EeccccccccchhhhhhhcccccC
Confidence 678999999998 46666666665 66 6999999999888776642 1122 222211111 46
Q ss_pred ccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 132 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 132 fD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+|+|+-.... ...+....++|+++|+++++...
T Consensus 99 ~D~vid~~g~----~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 99 PNVTIDCSGN----EKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp CSEEEECSCC----HHHHHHHHHHSCTTCEEEECSCC
T ss_pred CceeeecCCC----hHHHHHHHHHHhcCCceEEEecC
Confidence 8999875543 35677888999999999988654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=95.68 E-value=0.0065 Score=60.02 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=53.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCC------CCCeEEEEccHHHHHHhhc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------DKSLKVHITDGIKFVREMK 596 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---gl~~------~~rl~v~i~Da~~~l~~~~ 596 (759)
+...+||..=+|.|.-+..+.... .+|++||-+|.+..+.++-+ .... -.|++++.+|+++|+++..
T Consensus 87 ~~~~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~ 162 (250)
T d2oyra1 87 DYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_dssp TBCCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS
T ss_pred CCCCEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccC
Confidence 455699999999999998888773 59999999999988877654 1111 2489999999999997653
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.52 E-value=0.0059 Score=58.37 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=68.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+||..|+|+|.+...+.+..+ ...+.++|+|+..+.+ ..+..++.+|...+.
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------~~~~~~~~~~~~~~~-------------- 74 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------PPWAEGILADFLLWE-------------- 74 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------CTTEEEEESCGGGCC--------------
T ss_pred CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------cccceeeeeehhccc--------------
Confidence 4557999999999987766665544 4579999999975443 235688888854421
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCC--CCC-----------------CcCCCCCChHHHHHHHHHcc
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM-----------------TCPAADFVEGSFLLTVKDAL 667 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~--~g~-----------------scPp~~f~~~~fl~~~~~~L 667 (759)
...+||+|+.+..-.... ... ..+...-+...|++.+.+.|
T Consensus 75 --------------------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~l 134 (223)
T d2ih2a1 75 --------------------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLL 134 (223)
T ss_dssp --------------------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHE
T ss_pred --------------------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhc
Confidence 136799999864321100 000 00011113467899999999
Q ss_pred CcCcEEEEEe
Q 004354 668 SEQGLFIVNL 677 (759)
Q Consensus 668 ~~~Gilv~N~ 677 (759)
++||.+++=+
T Consensus 135 k~~G~~~~I~ 144 (223)
T d2ih2a1 135 KPGGVLVFVV 144 (223)
T ss_dssp EEEEEEEEEE
T ss_pred ccCCceEEEE
Confidence 9999766443
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.49 E-value=0.051 Score=50.27 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=67.1
Q ss_pred CCCCCCeEEEECCCc-chhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----------Ccc
Q 004354 65 TSSPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------GGL 132 (759)
Q Consensus 65 ~~~~~~~ILDlGCG~-G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----------gtf 132 (759)
...++.+||-+|||. |.++..+++. |...|+.+|.++.-++.+++.-. ..++...-.+.. +.+
T Consensus 25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga-----~~~i~~~~~~~~~~~~~~~~~~~G~ 99 (174)
T d1e3ia2 25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA-----TDCLNPRELDKPVQDVITELTAGGV 99 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----SEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC-----CcccCCccchhhhhhhHhhhhcCCC
Confidence 347889999999998 7777777765 77789999999987776655321 112211111111 679
Q ss_pred cEEEeCCCChhHHHHHHHHHHHhcccC-cEEEEEEcC
Q 004354 133 DALMEPELGHKLGNQYLSEVKRLLKSG-GKFVCLTLA 168 (759)
Q Consensus 133 D~Ii~~~~~~~~~~~~l~ei~rvLkpG-G~liiit~~ 168 (759)
|+++-.... ...+.+..+.+++| |+++++...
T Consensus 100 d~vie~~G~----~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 100 DYSLDCAGT----AQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp SEEEESSCC----HHHHHHHHHTBCTTTCEEEECCCS
T ss_pred cEEEEeccc----chHHHHHHHHhhcCCeEEEecCCC
Confidence 999976543 46788999999996 999987653
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.38 E-value=0.0077 Score=61.90 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=52.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHH
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~ 591 (759)
.....||.||-|.|+|+..|......-++++||+|+..++.-++.|. +++++++.+|+..|
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDW 102 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCH
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhhc
Confidence 35568999999999999999877422389999999999999998874 57899999999876
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.37 E-value=0.036 Score=51.39 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=68.1
Q ss_pred CCCCeEEEEcccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEcc-HHH-HHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD-GIK-FVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~D-a~~-~l~~~~~~~~~~~~ 604 (759)
....+|||+|.|+ |.+...+.+.+...+|.++|.++.=++.|+++ |. +.-+.....| ..+ ..+...
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~-Ga--~~~i~~~~~~~~~~~~~~~~~-------- 95 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL-GA--TDCLNPRELDKPVQDVITELT-------- 95 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TC--SEEECGGGCSSCHHHHHHHHH--------
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh-CC--CcccCCccchhhhhhhHhhhh--------
Confidence 4456899999997 77777888887766899999999999999884 54 1111111112 222 222221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcC-cEEEEEecCC
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ-GLFIVNLVSR 680 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~-Gilv~N~~~~ 680 (759)
+..+|++|- .++ .++.++.+.+.|+++ |.+++--...
T Consensus 96 -----------------------~~G~d~vie--~~G--------------~~~~~~~a~~~~~~g~G~~v~vG~~~ 133 (174)
T d1e3ia2 96 -----------------------AGGVDYSLD--CAG--------------TAQTLKAAVDCTVLGWGSCTVVGAKV 133 (174)
T ss_dssp -----------------------TSCBSEEEE--SSC--------------CHHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred -----------------------cCCCcEEEE--ecc--------------cchHHHHHHHHhhcCCeEEEecCCCC
Confidence 356899876 222 167899999999996 9887654433
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.37 E-value=0.029 Score=51.33 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=37.7
Q ss_pred CeEEEEccc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh
Q 004354 531 VKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 572 (759)
Q Consensus 531 ~~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~ 572 (759)
++|++||+| ||+++..|.+..+..+|.++|.|++.++.|++.
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~ 45 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL 45 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh
Confidence 479999999 779999999887777999999999999999876
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.34 E-value=0.024 Score=51.94 Aligned_cols=99 Identities=19% Similarity=0.326 Sum_probs=62.4
Q ss_pred CCCCeEEEEcccc--cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 528 GKSVKAVVIGLGA--GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 528 ~~~~~vLviGlG~--G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
....+|||+|.|| |.+...+.......+|.+++.++.-++.|+++ |. +..+.....|..+.+.+..
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~-Ga--~~~i~~~~~~~~~~~~~~~--------- 93 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-GA--DYVINASMQDPLAEIRRIT--------- 93 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-TC--SEEEETTTSCHHHHHHHHT---------
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc-CC--ceeeccCCcCHHHHHHHHh---------
Confidence 4557899999743 35455455555666999999999999999874 53 2111111134444444432
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
.+..||+||- +-.+ ...++.+.+.|+|+|.+++
T Consensus 94 ---------------------~~~~~d~vid-~~g~---------------~~~~~~a~~~l~~~G~iv~ 126 (170)
T d1jvba2 94 ---------------------ESKGVDAVID-LNNS---------------EKTLSVYPKALAKQGKYVM 126 (170)
T ss_dssp ---------------------TTSCEEEEEE-SCCC---------------HHHHTTGGGGEEEEEEEEE
T ss_pred ---------------------hcccchhhhc-cccc---------------chHHHhhhhhcccCCEEEE
Confidence 1356997775 2111 5567777889999997763
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.34 E-value=0.024 Score=58.06 Aligned_cols=76 Identities=9% Similarity=-0.005 Sum_probs=57.9
Q ss_pred hhhHHHHHHhhcC---CCCCCCCeEEEECCCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecc
Q 004354 51 PQLRDPLISLIGA---PTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (759)
Q Consensus 51 ~~l~~~l~~~l~~---~~~~~~~~ILDlGCG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~ 126 (759)
+.+.+.+...+.. .....+..|||||+|.|.++..|++. +.++|+++|+++..++..+++.. ..+++++.+|+.
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~~~~~ii~~D~l 100 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--GSPLQILKRDPY 100 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--TSSCEEECSCTT
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--CCCcEEEeCchh
Confidence 4555566665532 11135678999999999999999987 45689999999999998887753 357999999987
Q ss_pred cC
Q 004354 127 SM 128 (759)
Q Consensus 127 ~~ 128 (759)
.+
T Consensus 101 ~~ 102 (322)
T d1i4wa_ 101 DW 102 (322)
T ss_dssp CH
T ss_pred hc
Confidence 54
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.17 E-value=0.028 Score=53.13 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=65.7
Q ss_pred CCCCCeEEEECCCc-chhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----------Ccc
Q 004354 66 SSPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------GGL 132 (759)
Q Consensus 66 ~~~~~~ILDlGCG~-G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----------gtf 132 (759)
.+++.+||.+|||. |.++..+++. |...|+++|.++.-++.+++.- .+.. .+-.+.. ..+
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G------a~~~-~~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG------FEIA-DLSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT------CEEE-ETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc------ccEE-EeCCCcCHHHHHHHHhCCCCc
Confidence 36889999999998 6566666654 7778999999999888776542 2221 1111111 458
Q ss_pred cEEEeCCC------Chh-----HHHHHHHHHHHhcccCcEEEEEEc
Q 004354 133 DALMEPEL------GHK-----LGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 133 D~Ii~~~~------~~~-----~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|+++-... .+. .....++.+.++++|||+++++..
T Consensus 96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 98885321 111 145789999999999999998864
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.04 E-value=0.0096 Score=54.84 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=61.4
Q ss_pred CCCCeEEEECCC-cchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccC-C------CcccEEEe
Q 004354 67 SPPPQILVPGCG-NSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-Q------GGLDALME 137 (759)
Q Consensus 67 ~~~~~ILDlGCG-~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~-~------gtfD~Ii~ 137 (759)
.++.+||.+||| .|.++..+++. |+ +|+++|.|+.-++.+++.-. + .++ |..+. . +.+|+++.
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa----~-~~i--~~~~~~~~~~~~~~~~d~vi~ 97 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGA----D-HYI--ATLEEGDWGEKYFDTFDLIVV 97 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTC----S-EEE--EGGGTSCHHHHSCSCEEEEEE
T ss_pred CCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCC----c-EEe--eccchHHHHHhhhcccceEEE
Confidence 688999999998 56777777654 77 59999999998887765421 1 122 21111 1 77998887
Q ss_pred CCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 138 PELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 138 ~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
...... ...+....++|+|+|+++++..
T Consensus 98 ~~~~~~--~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 98 CASSLT--DIDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp CCSCST--TCCTTTGGGGEEEEEEEEECCC
T ss_pred EecCCc--cchHHHHHHHhhccceEEEecc
Confidence 432111 1125567889999999998764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.97 E-value=0.04 Score=50.90 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=43.0
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHH-HHHHHHhCCCCcEEEEEcCHHHHHHHHhh
Q 004354 501 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLL-PMFLHECMPFVGIEAVELDLTMLNLAEDY 572 (759)
Q Consensus 501 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l-~~~L~~~~p~~~i~~VEiDp~v~~vA~~~ 572 (759)
-|.|.|.++.-+.+-. .......+|||+|.|+..+ ...+.+.....+|.++|.++.-++.|+++
T Consensus 7 ~lgCa~~Ta~~a~~~~--------a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l 71 (174)
T d1p0fa2 7 LIGCGFATGYGAAVNT--------AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL 71 (174)
T ss_dssp GGGTHHHHHHHHHHTT--------TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred hhhhHHHHHHHHHHHh--------hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence 4667666555433211 1224556899999986644 44455555556899999999999999885
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.82 E-value=0.12 Score=46.84 Aligned_cols=99 Identities=12% Similarity=0.157 Sum_probs=63.8
Q ss_pred CCCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEE----ccHHHHHHhhcccCccc
Q 004354 528 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHI----TDGIKFVREMKSSSATD 602 (759)
Q Consensus 528 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i----~Da~~~l~~~~~~~~~~ 602 (759)
....+|||+|.| .|.+...+.+.+. .+|.++|.++.-++.|++...- ..+.. .|..++.+....
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ga~-----~~~~~~~~~~~~~~~~~~~~~----- 93 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGAD-----VTLVVDPAKEEESSIIERIRS----- 93 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCS-----EEEECCTTTSCHHHHHHHHHH-----
T ss_pred CCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHcCCc-----EEEeccccccccchhhhhhhc-----
Confidence 445689999987 4455555666654 5999999999999999886431 11221 122333333220
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 603 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+..+|+||- +-.. ...++.+.+.|+++|.+++-
T Consensus 94 -----------------------~~g~g~D~vid-~~g~---------------~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 94 -----------------------AIGDLPNVTID-CSGN---------------EKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp -----------------------HSSSCCSEEEE-CSCC---------------HHHHHHHHHHSCTTCEEEEC
T ss_pred -----------------------ccccCCceeee-cCCC---------------hHHHHHHHHHHhcCCceEEE
Confidence 11356898865 2111 56788899999999987753
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.67 E-value=0.055 Score=50.10 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=36.9
Q ss_pred CCCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC
Q 004354 528 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 574 (759)
Q Consensus 528 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg 574 (759)
.....|||+|.|+. .+...+...+...+|.+||.+++-+++|+++-.
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA 75 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA 75 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence 45568999999866 444555666666799999999999999988753
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.65 E-value=0.039 Score=50.42 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=63.9
Q ss_pred CCCCCeEEEECC-C-cchhHHHHHH-hCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---------Cccc
Q 004354 66 SSPPPQILVPGC-G-NSRLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---------GGLD 133 (759)
Q Consensus 66 ~~~~~~ILDlGC-G-~G~ls~~L~~-~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---------gtfD 133 (759)
..++.+||-+|| | .|.++..+++ .|+..|+++|.++.-++.+++.- .. .++..+-.+.. +.+|
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~G----a~-~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAG----AD-YVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHT----CS-EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcC----Cc-eeeccCCcCHHHHHHHHhhcccch
Confidence 368899999997 3 5566665555 47778999999998887776542 11 12222111111 5699
Q ss_pred EEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 134 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 134 ~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
+++..... ...++...+.++|||+++++.+.
T Consensus 100 ~vid~~g~----~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 100 AVIDLNNS----EKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEEESCCC----HHHHTTGGGGEEEEEEEEECCSS
T ss_pred hhhccccc----chHHHhhhhhcccCCEEEEeccc
Confidence 99986543 45677788999999999888643
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=94.61 E-value=0.018 Score=56.65 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=55.9
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHH---HHhccCC-------CCcEEEEeecccCC----Cccc
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML---RRNVRDR-------SDMRWRVMDMTSMQ----GGLD 133 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~---~r~~~~~-------~~i~f~~~D~~~~~----gtfD 133 (759)
...+|||.-||.|..+..|+..|++ |++++-++.+....+ +++.... .+++++++|..++- ..||
T Consensus 88 ~~~~VlD~TaGlG~Da~vlA~~G~~-V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 88 YLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp BCCCEEETTCTTCHHHHHHHHHTCC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CCCEEEECCCcccHHHHHHHhCCCE-EEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 3458999999999999999999986 999999998655443 3332221 26899999976643 6799
Q ss_pred EEEeCCCC
Q 004354 134 ALMEPELG 141 (759)
Q Consensus 134 ~Ii~~~~~ 141 (759)
+|+..+..
T Consensus 167 vIYlDPMF 174 (250)
T d2oyra1 167 VVYLDPMF 174 (250)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99997744
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=94.40 E-value=0.0071 Score=59.35 Aligned_cols=146 Identities=11% Similarity=0.097 Sum_probs=86.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHH--HHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 529 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLT--MLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 529 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~--v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
...+|+.||+|-|+-+.++....+...+.++++=-. ...+....++. +-++...++.+.
T Consensus 66 ~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~---ni~~~~~~~dv~---------------- 126 (257)
T d2p41a1 66 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGW---NLVRLQSGVDVF---------------- 126 (257)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTG---GGEEEECSCCTT----------------
T ss_pred CCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCcccccccc---ccccchhhhhHH----------------
Confidence 345899999999999999988865567777776100 00000001110 112222222111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEecCCChhHHH
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 686 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~~~~~~~~~ 686 (759)
...+.+.|+|+.|+-.+++.. ...+-.+...|+.+.+.|+|||-|++=+.+.-....-
T Consensus 127 ------------------~l~~~~~D~vlcDm~ess~~~----~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~ 184 (257)
T d2p41a1 127 ------------------FIPPERCDTLLCDIGESSPNP----TVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVI 184 (257)
T ss_dssp ------------------TSCCCCCSEEEECCCCCCSSH----HHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHH
T ss_pred ------------------hcCCCcCCEEEeeCCCCCCCc----hhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHH
Confidence 112477999999984321100 0122235577888889999999999999887655555
Q ss_pred HHHHHHHHhcCceEEEee--cCCccEEEEEe
Q 004354 687 MVISRMKMVFNHLFCLQL--EEDVNLVLFGL 715 (759)
Q Consensus 687 ~v~~~l~~vF~~v~~~~~--~~~~N~Vl~a~ 715 (759)
..+++|+..|.....-.. -+...++.+.+
T Consensus 185 e~le~lq~~fgg~lVR~P~SRnst~EmY~Vs 215 (257)
T d2p41a1 185 EKMEALQRKHGGALVRNPLSRNSTHEMYWVS 215 (257)
T ss_dssp HHHHHHHHHHCCEEECCTTSCTTCCCEEEET
T ss_pred HHHHHHHHHhCCeeEcCCCCccccceeEEee
Confidence 668999999986444331 13344555554
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.27 E-value=0.078 Score=48.07 Aligned_cols=88 Identities=14% Similarity=0.244 Sum_probs=59.2
Q ss_pred CCCCeEEEECCCc-chhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----------CcccE
Q 004354 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------GGLDA 134 (759)
Q Consensus 67 ~~~~~ILDlGCG~-G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----------gtfD~ 134 (759)
.++.+||-+|||. |.++..+++. |. +|+++|.++.-++.+++.- . -.++ |..+.. +.+|.
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~G----a-~~~i--~~~~~~~~~~~~~~~~g~~~~ 97 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLG----A-SLTV--NARQEDPVEAIQRDIGGAHGV 97 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT----C-SEEE--ETTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccC----c-cccc--cccchhHHHHHHHhhcCCccc
Confidence 6789999999985 5566666665 64 6999999998888776532 1 1222 222221 44555
Q ss_pred EEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 135 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 135 Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
|++... ...+....+.|+|||+++++..
T Consensus 98 i~~~~~-----~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 98 LVTAVS-----NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp EECCSC-----HHHHHHHHTTEEEEEEEEECCC
T ss_pred cccccc-----chHHHHHHHHhcCCcEEEEEEe
Confidence 555433 3467788899999999998764
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.23 E-value=0.089 Score=47.53 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=62.3
Q ss_pred CCCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 528 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 528 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....+|||.|.|+- .+...+.... ..+|.+++.++.=++.+++ +|.. .-+.....|..+-++...
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~-~Ga~--~~~~~~~~~~~~~~~~~~---------- 91 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE-LGAD--LVVNPLKEDAAKFMKEKV---------- 91 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH-TTCS--EEECTTTSCHHHHHHHHH----------
T ss_pred CCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhh-cCcc--eecccccchhhhhccccc----------
Confidence 44568999998854 4444555554 4589999999999999987 5642 111111124445555443
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
..+|.+++|.-+ .+.+..+.++|+++|.+++-
T Consensus 92 ----------------------~~~~~~v~~~~~----------------~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 92 ----------------------GGVHAAVVTAVS----------------KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp ----------------------SSEEEEEESSCC----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred ----------------------CCCceEEeecCC----------------HHHHHHHHHHhccCCceEec
Confidence 235556664321 56789999999999987753
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.19 E-value=0.072 Score=48.76 Aligned_cols=93 Identities=12% Similarity=0.098 Sum_probs=63.1
Q ss_pred CCCCeEEEECCCcchh-HHHHHH-hCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--------CcccEEE
Q 004354 67 SPPPQILVPGCGNSRL-SEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------GGLDALM 136 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~l-s~~L~~-~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--------gtfD~Ii 136 (759)
.++..||-+|||...+ +..+++ .|...|+++|.++.-++.+++.- ...++..+-.... ..+|+++
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~g-----a~~~i~~~~~~~~~~~~~~~~~g~d~vi 105 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLG-----ADHVVDARRDPVKQVMELTRGRGVNVAM 105 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTT-----CSEEEETTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcc-----cceeecCcccHHHHHHHhhCCCCceEEE
Confidence 5788999999986544 455554 48878999999998777766532 1122221111111 4599998
Q ss_pred eCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 137 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 137 ~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
..... ...++...+.|++||+++++.+.
T Consensus 106 d~~g~----~~~~~~a~~~l~~~G~iv~~G~~ 133 (172)
T d1h2ba2 106 DFVGS----QATVDYTPYLLGRMGRLIIVGYG 133 (172)
T ss_dssp ESSCC----HHHHHHGGGGEEEEEEEEECCCS
T ss_pred EecCc----chHHHHHHHHHhCCCEEEEEeCc
Confidence 76543 35688889999999999987653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.09 E-value=0.074 Score=48.73 Aligned_cols=97 Identities=16% Similarity=0.118 Sum_probs=63.2
Q ss_pred CCCCeEEEEccc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 528 GKSVKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 528 ~~~~~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
....+|||.|.+ .|.+...+...+. .++.++.-+++-.+.|++ +|. +.-+.....|-.+.+.+..
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~~~~~~~~~~-~Ga--~~vi~~~~~~~~~~i~~~t--------- 93 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQ-NGA--HEVFNHREVNYIDKIKKYV--------- 93 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHH-TTC--SEEEETTSTTHHHHHHHHH---------
T ss_pred CCCCEEEEEeccccccccccccccccC-cccccccccccccccccc-cCc--ccccccccccHHHHhhhhh---------
Confidence 455689999963 4566666777764 588888889988999987 454 2211111234445554433
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
.+..+|+|+- .- ..+.++.+.+.|+++|.++.
T Consensus 94 ---------------------~~~g~d~v~d-~~----------------g~~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 94 ---------------------GEKGIDIIIE-ML----------------ANVNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp ---------------------CTTCEEEEEE-SC----------------HHHHHHHHHHHEEEEEEEEE
T ss_pred ---------------------ccCCceEEee-cc----------------cHHHHHHHHhccCCCCEEEE
Confidence 1366998775 21 14568888899999998774
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.087 Score=48.23 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=62.2
Q ss_pred CCCCCeEEEECC--CcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----------Cc
Q 004354 66 SSPPPQILVPGC--GNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------GG 131 (759)
Q Consensus 66 ~~~~~~ILDlGC--G~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----------gt 131 (759)
..++.+||..|+ |.|.++..+++. |+ +|++++-|+.-.+.+++.- . -.+ .|..+.. ..
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~G----a-~~v--i~~~~~~~~~~i~~~t~~~g 97 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNG----A-HEV--FNHREVNYIDKIKKYVGEKG 97 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTT----C-SEE--EETTSTTHHHHHHHHHCTTC
T ss_pred CCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccC----c-ccc--cccccccHHHHhhhhhccCC
Confidence 468899999997 467777777765 76 5999998998777665431 1 112 2333322 56
Q ss_pred ccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 132 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 132 fD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+|+|+.... ...+....++|+|+|+++.+.
T Consensus 98 ~d~v~d~~g-----~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 98 IDIIIEMLA-----NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEEEEESCH-----HHHHHHHHHHEEEEEEEEECC
T ss_pred ceEEeeccc-----HHHHHHHHhccCCCCEEEEEe
Confidence 999998643 346888889999999999864
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.02 E-value=0.081 Score=48.40 Aligned_cols=95 Identities=22% Similarity=0.225 Sum_probs=62.5
Q ss_pred CCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEE--ccHHHHHHhhcccCcccccc
Q 004354 529 KSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHI--TDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 529 ~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i--~Da~~~l~~~~~~~~~~~~~ 605 (759)
....|||+|.|+. .+...+...+....|.++|.++.-++.|++... + .++. .|-.+.+.+..
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga---~---~~i~~~~~~~~~~~~~~--------- 96 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA---D---HVVDARRDPVKQVMELT--------- 96 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC---S---EEEETTSCHHHHHHHHT---------
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc---c---eeecCcccHHHHHHHhh---------
Confidence 3468999998855 333444444455689999999999999988643 1 2222 23344333332
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
.+..+|+||--+-+ ...++...+.|+++|.+++
T Consensus 97 ---------------------~~~g~d~vid~~g~----------------~~~~~~a~~~l~~~G~iv~ 129 (172)
T d1h2ba2 97 ---------------------RGRGVNVAMDFVGS----------------QATVDYTPYLLGRMGRLII 129 (172)
T ss_dssp ---------------------TTCCEEEEEESSCC----------------HHHHHHGGGGEEEEEEEEE
T ss_pred ---------------------CCCCceEEEEecCc----------------chHHHHHHHHHhCCCEEEE
Confidence 13569988862211 5578899999999998885
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.21 E-value=0.24 Score=45.27 Aligned_cols=101 Identities=20% Similarity=0.303 Sum_probs=68.8
Q ss_pred CCCeEEEEcccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004354 529 KSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 607 (759)
Q Consensus 529 ~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~ 607 (759)
.|.+|+|||.|. |.-+......+ ...|++.|.+++.++..+..|+ .++.....+-...-+..
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~----~~~~~~~~~~~~l~~~~------------ 93 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG----SRVELLYSNSAEIETAV------------ 93 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG----GGSEEEECCHHHHHHHH------------
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhc----ccceeehhhhhhHHHhh------------
Confidence 678999999994 44444444554 4699999999999999888875 34666666654443333
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEEec
Q 004354 608 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 678 (759)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N~~ 678 (759)
...|+||-=+--+. -+++.+++++.++. ++||.++ +.+.
T Consensus 94 ---------------------~~aDivI~aalipG------~~aP~lIt~~mv~~----Mk~GSVI-VDva 132 (168)
T d1pjca1 94 ---------------------AEADLLIGAVLVPG------RRAPILVPASLVEQ----MRTGSVI-VDVA 132 (168)
T ss_dssp ---------------------HTCSEEEECCCCTT------SSCCCCBCHHHHTT----SCTTCEE-EETT
T ss_pred ---------------------ccCcEEEEeeecCC------cccCeeecHHHHhh----cCCCcEE-EEee
Confidence 34799998554332 15788999877764 5555554 4543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.89 E-value=0.15 Score=44.31 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=42.5
Q ss_pred eEEEEccc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHH--HHHHhh
Q 004354 532 KAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI--KFVREM 595 (759)
Q Consensus 532 ~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~--~~l~~~ 595 (759)
+|+|+|+| |-.++..|... +..|.+||.||+.++-++..++ ..++.||+. +++++.
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~--g~~v~vid~d~~~~~~~~~~~~------~~vi~Gd~~~~~~l~~~ 61 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAEID------ALVINGDCTKIKTLEDA 61 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCS------SEEEESCTTSHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHC--CCCcceecCChhhhhhhhhhhh------hhhccCcccchhhhhhc
Confidence 68999987 33666666655 3589999999999998877765 478999976 455554
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.79 E-value=0.22 Score=44.71 Aligned_cols=89 Identities=15% Similarity=0.198 Sum_probs=58.1
Q ss_pred CCCCeEEEECCCcch-hHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----------CcccE
Q 004354 67 SPPPQILVPGCGNSR-LSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------GGLDA 134 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~-ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----------gtfD~ 134 (759)
.++.+||-.|||.-. ....+++. |. +|+++|.++.-++.+++.- .+.. .|..+.. +.+|.
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~G------a~~~-~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELG------ADLV-VNPLKEDAAKFMKEKVGGVHAA 97 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT------CSEE-ECTTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcC------ccee-cccccchhhhhcccccCCCceE
Confidence 678999999998744 44455554 55 6999999998887775531 1211 1221111 44555
Q ss_pred EEeCCCChhHHHHHHHHHHHhcccCcEEEEEEcC
Q 004354 135 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 135 Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~~ 168 (759)
|++.. . ...+....+.|+|||+++++...
T Consensus 98 v~~~~-~----~~~~~~a~~~l~~~G~i~~~g~~ 126 (168)
T d1rjwa2 98 VVTAV-S----KPAFQSAYNSIRRGGACVLVGLP 126 (168)
T ss_dssp EESSC-C----HHHHHHHHHHEEEEEEEEECCCC
T ss_pred EeecC-C----HHHHHHHHHHhccCCceEecccc
Confidence 54433 2 45688889999999999987643
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.62 E-value=0.19 Score=45.70 Aligned_cols=99 Identities=16% Similarity=0.118 Sum_probs=62.9
Q ss_pred CCCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEE--EEccHHHHHHhhcccCccccc
Q 004354 528 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV--HITDGIKFVREMKSSSATDEM 604 (759)
Q Consensus 528 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v--~i~Da~~~l~~~~~~~~~~~~ 604 (759)
....+|||+|.|+. .+...+...+....|.+++.++.-.+.|++ ||. +.-+.. ...+..+.++...
T Consensus 27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~-lGa--~~~i~~~~~~~~~~~~~~~~~-------- 95 (176)
T d2fzwa2 27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE-FGA--TECINPQDFSKPIQEVLIEMT-------- 95 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-HTC--SEEECGGGCSSCHHHHHHHHT--------
T ss_pred CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH-hCC--cEEEeCCchhhHHHHHHHHHc--------
Confidence 44568999998854 444455555566699999999999999986 454 111111 0123334444432
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 605 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
+..+|+||--+ + ....++.+...+.++|.+++-
T Consensus 96 -----------------------~~g~D~vid~~--G--------------~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 96 -----------------------DGGVDYSFECI--G--------------NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp -----------------------TSCBSEEEECS--C--------------CHHHHHHHHHTBCTTTCEEEE
T ss_pred -----------------------CCCCcEeeecC--C--------------CHHHHHHHHHhhcCCceeEEE
Confidence 35699988722 2 156788899999998766543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=92.55 E-value=0.26 Score=48.91 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=53.2
Q ss_pred CeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----CcccEEEeC
Q 004354 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----GGLDALMEP 138 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----gtfD~Ii~~ 138 (759)
++|||+=||.|.++.-|...|++-+.++|+++.+++..+.++ + -...+.|++++. ...|+++..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~----~-~~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH----S-AKLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC----C-SEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC----C-CCCccCChhhCCHhHcccccEEeec
Confidence 479999999999999998889987889999998887665554 3 456889999886 678999964
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.31 E-value=0.55 Score=42.79 Aligned_cols=96 Identities=19% Similarity=0.101 Sum_probs=61.3
Q ss_pred CCCCCCeEEEECCCcchh-HHHHHH-hCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----------Ccc
Q 004354 65 TSSPPPQILVPGCGNSRL-SEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------GGL 132 (759)
Q Consensus 65 ~~~~~~~ILDlGCG~G~l-s~~L~~-~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----------gtf 132 (759)
..+++.+||-+|||...+ +..+++ .|...|+++|.++.-++.+++.- --.++...-.+.. +.+
T Consensus 24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lG-----a~~~i~~~~~d~~~~~~~~~~~~~G~ 98 (174)
T d1p0fa2 24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELG-----ATECLNPKDYDKPIYEVICEKTNGGV 98 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTT-----CSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcC-----CcEEEcCCCchhHHHHHHHHhcCCCC
Confidence 347899999999986444 444444 48888999999998888776532 1122211111111 568
Q ss_pred cEEEeCCCChhHHHHHHHHHHHhccc-CcEEEEEEcCc
Q 004354 133 DALMEPELGHKLGNQYLSEVKRLLKS-GGKFVCLTLAE 169 (759)
Q Consensus 133 D~Ii~~~~~~~~~~~~l~ei~rvLkp-GG~liiit~~~ 169 (759)
|.++..... ...+......+++ +|+++++.+..
T Consensus 99 d~vid~~g~----~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 99 DYAVECAGR----IETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp SEEEECSCC----HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred cEEEEcCCC----chHHHHHHHHHHHhcCceEEEEEec
Confidence 988875543 3456666666655 69998887643
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=92.18 E-value=0.31 Score=47.56 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=57.6
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cc
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gt 131 (759)
.+..+|--|.+.|. .+..|++.|+. |+.+|.++..++.+.+.+...+.++.++.+|+++.. +.
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK 82 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 46688888987764 56777888985 999999999999888877666778999999998865 88
Q ss_pred ccEEEeC
Q 004354 132 LDALMEP 138 (759)
Q Consensus 132 fD~Ii~~ 138 (759)
.|+++.+
T Consensus 83 iDilVnn 89 (260)
T d1zema1 83 IDFLFNN 89 (260)
T ss_dssp CCEEEEC
T ss_pred CCeehhh
Confidence 9999964
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.87 E-value=0.39 Score=43.45 Aligned_cols=47 Identities=26% Similarity=0.214 Sum_probs=35.4
Q ss_pred CCCCeEEEEcccccH-HHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC
Q 004354 528 GKSVKAVVIGLGAGL-LPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 575 (759)
Q Consensus 528 ~~~~~vLviGlG~G~-l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl 575 (759)
....+|||+|.|++. +...+.......+|.+++.++.-++.|++ ||.
T Consensus 27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~-~GA 74 (175)
T d1cdoa2 27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-FGA 74 (175)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTC
T ss_pred CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH-cCC
Confidence 455679999999764 44445555556689999999999999987 554
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.74 E-value=0.58 Score=42.01 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=71.8
Q ss_pred eEEEECCCc--chhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-CcccEEEeCCCChhHHH
Q 004354 71 QILVPGCGN--SRLSEHLYDAGFH-GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-GGLDALMEPELGHKLGN 146 (759)
Q Consensus 71 ~ILDlGCG~--G~ls~~L~~~G~~-~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-gtfD~Ii~~~~~~~~~~ 146 (759)
+|+-||||. |.++..|.+.|+. +|+++|.++..++.+++.. .+.....+..... ...|+|+.... .....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~dlIila~p-~~~~~ 76 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-----IIDEGTTSIAKVEDFSPDFVMLSSP-VRTFR 76 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-----SCSEEESCGGGGGGTCCSEEEECSC-HHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh-----cchhhhhhhhhhhccccccccccCC-chhhh
Confidence 589999996 4466677777863 6999999999998887652 1222222222222 46798887543 34467
Q ss_pred HHHHHHHHhcccCcEEEEEEcCchhhhhhhccccCCCceEEEEEeCC
Q 004354 147 QYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 193 (759)
Q Consensus 147 ~~l~ei~rvLkpGG~liiit~~~~~~~~~l~~~~~~~w~v~~~~~~~ 193 (759)
..+.++...++++..++-++-....+...+...... ..+..|....
T Consensus 77 ~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~-~~i~~hPm~G 122 (171)
T d2g5ca2 77 EIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGGHPIAG 122 (171)
T ss_dssp HHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECEEEECC
T ss_pred hhhhhhhccccccccccccccccHHHHHHHHHhhcc-cccccccccc
Confidence 888999999998876665554434443333222221 2345566543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.71 E-value=0.34 Score=47.20 Aligned_cols=71 Identities=13% Similarity=0.170 Sum_probs=55.4
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecccCC-------------
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ------------- 129 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~--~~i~f~~~D~~~~~------------- 129 (759)
++..+|-.|++.|. ++..|++.|+. |+.+|.++..++.+.+.+.... .++.++++|+++..
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~~-Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGLK-VVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 35689999988775 55667778985 9999999999988877765543 35778899998865
Q ss_pred CcccEEEeCC
Q 004354 130 GGLDALMEPE 139 (759)
Q Consensus 130 gtfD~Ii~~~ 139 (759)
+..|+++.+.
T Consensus 88 g~iD~lVnnA 97 (257)
T d1xg5a_ 88 SGVDICINNA 97 (257)
T ss_dssp CCCSEEEECC
T ss_pred CCCCEEEecc
Confidence 7899998753
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=91.61 E-value=0.57 Score=48.99 Aligned_cols=115 Identities=14% Similarity=0.116 Sum_probs=73.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-------------CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeEEEEccHHHH
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECMP-------------FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKF 591 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~p-------------~~~i~~VEiDp~v~~vA~~~F---gl~~~~rl~v~i~Da~~~ 591 (759)
....+|+.-.+|+|.+...+.+++. ...+.++|+|+....+|+-.+ |. ..+...+..+|.+.
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~-~~~~~~i~~~d~l~- 238 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI-GTDRSPIVCEDSLE- 238 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC-CSSCCSEEECCTTT-
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC-ccccceeecCchhh-
Confidence 4457899999999977655544332 135999999999999999765 33 23456677777542
Q ss_pred HHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcC-CCCCCCCCC------CcCCCCCChHHHHHHHH
Q 004354 592 VREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV-DSPDSSSGM------TCPAADFVEGSFLLTVK 664 (759)
Q Consensus 592 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~-~s~d~~~g~------scPp~~f~~~~fl~~~~ 664 (759)
.. ...+||+||... ++....... .-++..-.+.-|++.+.
T Consensus 239 --~~-------------------------------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~ 285 (425)
T d2okca1 239 --KE-------------------------------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMM 285 (425)
T ss_dssp --SC-------------------------------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHH
T ss_pred --hh-------------------------------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHH
Confidence 11 136799999844 111100000 00112223556999999
Q ss_pred HccCcCcEEEEEe
Q 004354 665 DALSEQGLFIVNL 677 (759)
Q Consensus 665 ~~L~~~Gilv~N~ 677 (759)
..|++||.+++=+
T Consensus 286 ~~Lk~~G~~~iI~ 298 (425)
T d2okca1 286 LMLKTGGRAAVVL 298 (425)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HhcCCCCeEEEEe
Confidence 9999999665443
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=91.55 E-value=0.14 Score=50.78 Aligned_cols=58 Identities=9% Similarity=0.038 Sum_probs=47.3
Q ss_pred hhhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc
Q 004354 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR 113 (759)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~ 113 (759)
..+...+++... ++++.|||.=||+|..+......|- +.+|+|+++..++.+++|+..
T Consensus 237 ~~L~~rlI~~~s----~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 237 AKLPEFFIRMLT----EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp THHHHHHHHHHC----CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred hHHHHHhhhhcc----cCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence 345555555554 4789999999999999998888875 599999999999999988743
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.52 E-value=0.59 Score=42.13 Aligned_cols=92 Identities=17% Similarity=0.050 Sum_probs=60.8
Q ss_pred CCCCCeEEEECCCc-chhHHHHHH-hCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----------Cccc
Q 004354 66 SSPPPQILVPGCGN-SRLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------GGLD 133 (759)
Q Consensus 66 ~~~~~~ILDlGCG~-G~ls~~L~~-~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----------gtfD 133 (759)
.+++.+||-.|||. |.++..+++ .|...|+++|.++.-++.+++.-. -.++..+-.... +.+|
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa-----~~~i~~~~~~~~~~~~~~~~~~~g~D 100 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA-----TECINPQDFSKPIQEVLIEMTDGGVD 100 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC-----SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC-----cEEEeCCchhhHHHHHHHHHcCCCCc
Confidence 47899999999973 344455554 388889999999988877765421 112211111111 5699
Q ss_pred EEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 134 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 134 ~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+|+..... ...++.+..++++||.++++.
T Consensus 101 ~vid~~G~----~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 101 YSFECIGN----VKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp EEEECSCC----HHHHHHHHHTBCTTTCEEEEC
T ss_pred EeeecCCC----HHHHHHHHHhhcCCceeEEEE
Confidence 99976543 456788888999998877654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.34 E-value=0.33 Score=47.10 Aligned_cols=70 Identities=11% Similarity=0.089 Sum_probs=54.8
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cc
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gt 131 (759)
.+..+|-.|++.|. .+..|++.|+ +|+.+|.++..++.+.+.+...+.++.++.+|+++.. +.
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 87 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN 87 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 45678888877662 3455556687 4999999999998888877666678999999998865 89
Q ss_pred ccEEEeC
Q 004354 132 LDALMEP 138 (759)
Q Consensus 132 fD~Ii~~ 138 (759)
+|+++.+
T Consensus 88 iDilvnn 94 (251)
T d2c07a1 88 VDILVNN 94 (251)
T ss_dssp CCEEEEC
T ss_pred ceeeeec
Confidence 9999874
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.20 E-value=0.68 Score=39.90 Aligned_cols=83 Identities=18% Similarity=0.144 Sum_probs=55.8
Q ss_pred CeEEEECCCcchhHHHH----HHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------CcccEEEeC
Q 004354 70 PQILVPGCGNSRLSEHL----YDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------GGLDALMEP 138 (759)
Q Consensus 70 ~~ILDlGCG~G~ls~~L----~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------gtfD~Ii~~ 138 (759)
++|+-+|+| .++..+ .+.|+ .|+.+|.++..++.+..+. +..++.+|.++.. ...|++++.
T Consensus 1 M~IvI~G~G--~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 1 MYIIIAGIG--RVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcChhhhhhhccc
Confidence 367888875 444444 44576 4999999999888765542 4678999998876 678999885
Q ss_pred CCChhHHHHHHHHHHHhcccCcE
Q 004354 139 ELGHKLGNQYLSEVKRLLKSGGK 161 (759)
Q Consensus 139 ~~~~~~~~~~l~ei~rvLkpGG~ 161 (759)
..... ...+...+.+.+.+.-.
T Consensus 73 t~~d~-~N~~~~~~~k~~~~~~i 94 (132)
T d1lssa_ 73 TGKEE-VNLMSSLLAKSYGINKT 94 (132)
T ss_dssp CSCHH-HHHHHHHHHHHTTCCCE
T ss_pred CCcHH-HHHHHHHHHHHcCCceE
Confidence 43332 23344555666777633
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.06 E-value=0.21 Score=45.36 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=34.6
Q ss_pred CCCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC
Q 004354 528 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 575 (759)
Q Consensus 528 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl 575 (759)
....+|||+|.| .|.+...+.+.+ ..++.+++.++.-++.|+++ |.
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~l-Ga 72 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM-GA 72 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH-TC
T ss_pred CCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhcc-CC
Confidence 455789999987 445555555554 46899999999999999875 53
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.03 E-value=0.19 Score=48.16 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=45.5
Q ss_pred hhHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 004354 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV 112 (759)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~ 112 (759)
.+...+.+... ++++.|||.=||+|..+....+.|- +.+|+|+++..++.|++|+.
T Consensus 200 ~L~~~lI~~~s----~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERIIRASS----NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHC----CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC----CCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 34444555554 4789999999999999998887764 69999999999999999874
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=90.93 E-value=0.47 Score=42.51 Aligned_cols=89 Identities=15% Similarity=0.061 Sum_probs=60.9
Q ss_pred CeEEEECCCc--chhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeCCCChhHHHH
Q 004354 70 PQILVPGCGN--SRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEPELGHKLGNQ 147 (759)
Q Consensus 70 ~~ILDlGCG~--G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~~~~~~~~~~ 147 (759)
++|.-||+|. +.++..|.+.|+. |++.|.++..++.+++... +... .+..+.....|+|+..- .......
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~-V~~~d~~~~~~~~a~~~~~-----~~~~-~~~~~~~~~~DiIilav-p~~~~~~ 72 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHY-LIGVSRQQSTCEKAVERQL-----VDEA-GQDLSLLQTAKIIFLCT-PIQLILP 72 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHTTS-----CSEE-ESCGGGGTTCSEEEECS-CHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCE-EEEEECCchHHHHHHHhhc-----ccee-eeecccccccccccccC-cHhhhhh
Confidence 4688899984 5567788888885 9999999988887765421 1111 12111126789988743 3345788
Q ss_pred HHHHHHHhcccCcEEEEEE
Q 004354 148 YLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 148 ~l~ei~rvLkpGG~liiit 166 (759)
.++++...|+++-.++-.+
T Consensus 73 vl~~l~~~l~~~~iv~~~~ 91 (165)
T d2f1ka2 73 TLEKLIPHLSPTAIVTDVA 91 (165)
T ss_dssp HHHHHGGGSCTTCEEEECC
T ss_pred hhhhhhhhcccccceeecc
Confidence 9999999998888765554
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.65 E-value=0.37 Score=47.18 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=70.8
Q ss_pred CCeE-EEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cc
Q 004354 69 PPQI-LVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GG 131 (759)
Q Consensus 69 ~~~I-LDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gt 131 (759)
+.+| |-=|++.|. ++..|++.+..+|+.++.++.-++.+.+.+.....++.++.+|+.+.. +.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~ 81 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 81 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 3466 555766554 345566663346999999999998888887777788999999999876 89
Q ss_pred ccEEEeCCCC----------hhH-----------HHHHHHHHHHhcccCcEEEEEEc
Q 004354 132 LDALMEPELG----------HKL-----------GNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 132 fD~Ii~~~~~----------~~~-----------~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+|+++.+... ... ...+.+.+...|+++|+++.++-
T Consensus 82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS 138 (275)
T d1wmaa1 82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 138 (275)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 9999986410 000 33456677788888999887763
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.34 E-value=1.7 Score=39.02 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=35.8
Q ss_pred CCCCeEEEEcccccH-HHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc
Q 004354 528 GKSVKAVVIGLGAGL-LPMFLHECMPFVGIEAVELDLTMLNLAEDYF 573 (759)
Q Consensus 528 ~~~~~vLviGlG~G~-l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F 573 (759)
.....|||+|.|++. +...+...+...+|.+++.++.-.+.|++..
T Consensus 27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G 73 (176)
T d2jhfa2 27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 73 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence 445689999998664 4445555666679999999999999998875
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.23 E-value=0.71 Score=42.08 Aligned_cols=94 Identities=16% Similarity=0.101 Sum_probs=58.5
Q ss_pred CCCCCeEEEECCCcchhH-HHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEE-eecccCC---------Cccc
Q 004354 66 SSPPPQILVPGCGNSRLS-EHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV-MDMTSMQ---------GGLD 133 (759)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls-~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~-~D~~~~~---------gtfD 133 (759)
.+++..||-+|||...+. ..+++. |+.+|+++|.++.-++.|++.-.. .++. .|-.... +.+|
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~-----~~in~~~~~~~~~~~~~~~~g~G~d 101 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT-----ECISPKDSTKPISEVLSEMTGNNVG 101 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS-----EEECGGGCSSCHHHHHHHHHTSCCC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc-----EEECccccchHHHHHHHHhccccce
Confidence 468899999999864444 444443 777899999999999888775321 1111 1111110 5689
Q ss_pred EEEeCCCChhHHHHHHHH-HHHhcccCcEEEEEEcC
Q 004354 134 ALMEPELGHKLGNQYLSE-VKRLLKSGGKFVCLTLA 168 (759)
Q Consensus 134 ~Ii~~~~~~~~~~~~l~e-i~rvLkpGG~liiit~~ 168 (759)
.++...... ..+.. +..+++.+|+++++...
T Consensus 102 ~vi~~~g~~----~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 102 YTFEVIGHL----ETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp EEEECSCCH----HHHHHHHTTSCTTTCEEEECSCC
T ss_pred EEEEeCCch----HHHHHHHHHhhcCCeEEEEEEcc
Confidence 888765442 33333 34445566999888653
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.83 E-value=0.81 Score=44.57 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=70.9
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCC-HHHHHHHHHHhccCCCCcEEEEeecccCC-------------C
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFS-KVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------G 130 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS-~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------g 130 (759)
.+..+|-.|++.|. ++..|++.|+. |+.+|.+ +..++...+.+.....++.+.++|+.+.. +
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 95 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG 95 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence 35789999998774 67778888885 9898876 56666666666666778999999998865 8
Q ss_pred cccEEEeCCC----------ChhH-----------HHHHHHHHHHhcccCcEEEEEE
Q 004354 131 GLDALMEPEL----------GHKL-----------GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 131 tfD~Ii~~~~----------~~~~-----------~~~~l~ei~rvLkpGG~liiit 166 (759)
..|+++.+.. .... ...+.+.+.+.|+.+|..++++
T Consensus 96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 8999987531 1111 3445667777888888777664
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.66 E-value=0.64 Score=42.71 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCCeEEEEccc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004354 529 KSVKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 606 (759)
Q Consensus 529 ~~~~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~ 606 (759)
....|||.|.+ .|..+.-+.+.+....|.++.-.++-.....+.+|. +.-+..-..|..+.+++..
T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga--d~vi~~~~~~~~~~~~~~~---------- 97 (187)
T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF--DAAVNYKTGNVAEQLREAC---------- 97 (187)
T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC--SEEEETTSSCHHHHHHHHC----------
T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc--eEEeeccchhHHHHHHHHh----------
Confidence 33679998854 457777777777655677666555555444555564 3223333345566666654
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 607 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
+..+|+||- .- + .+.++...+.|+++|.++.
T Consensus 98 ---------------------~~GvDvv~D-~v-----G-----------g~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 98 ---------------------PGGVDVYFD-NV-----G-----------GDISNTVISQMNENSHIIL 128 (187)
T ss_dssp ---------------------TTCEEEEEE-SS-----C-----------HHHHHHHHTTEEEEEEEEE
T ss_pred ---------------------ccCceEEEe-cC-----C-----------chhHHHHhhhccccccEEE
Confidence 356999973 21 1 4578899999999998873
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.64 E-value=0.25 Score=49.48 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=54.1
Q ss_pred CCeEEEECCCcchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC------CcccEEEeCC
Q 004354 69 PPQILVPGCGNSRLSEHLYDAGFH--GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------GGLDALMEPE 139 (759)
Q Consensus 69 ~~~ILDlGCG~G~ls~~L~~~G~~--~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~------gtfD~Ii~~~ 139 (759)
+.+|+|+-||.|.++..|...|+. -+.++|+.+.+++..+.++ ++..+++.|+.+.. +..|+++...
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~----~~~~~~~~di~~~~~~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF----PHTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC----TTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC----CCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence 468999999999999988888874 3779999998887666553 66778888998876 4789998754
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=89.63 E-value=0.43 Score=42.77 Aligned_cols=39 Identities=23% Similarity=0.092 Sum_probs=32.9
Q ss_pred eEEEEccc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh
Q 004354 532 KAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 572 (759)
Q Consensus 532 ~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~ 572 (759)
||.+||+| |++++..|.+. +.+|+++|.+++.++.|++.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~ 42 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVER 42 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHh
Confidence 68999999 77888888765 35899999999999988764
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=89.26 E-value=0.35 Score=48.35 Aligned_cols=65 Identities=12% Similarity=0.005 Sum_probs=53.2
Q ss_pred CCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----CcccEEEeC
Q 004354 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----GGLDALMEP 138 (759)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----gtfD~Ii~~ 138 (759)
.+.+|||+=||-|.++..|.+.|++-+.++|+++.+++..+.++. +. .+.|+.+.. ..+|+++..
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~----~~--~~~Di~~~~~~~~~~~Dll~gg 78 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG----EK--PEGDITQVNEKTIPDHDILCAG 78 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS----CC--CBSCGGGSCGGGSCCCSEEEEE
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC----CC--CcCchhcCchhhcceeeeeecc
Confidence 468999999999999999999999878899999999988777652 22 257888776 678988863
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=89.20 E-value=0.74 Score=41.45 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=60.6
Q ss_pred CeEEEEccccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-------CCCCeEEEEccHHHHHHhhcccCcc
Q 004354 531 VKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-------QDKSLKVHITDGIKFVREMKSSSAT 601 (759)
Q Consensus 531 ~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~-------~~~rl~v~i~Da~~~l~~~~~~~~~ 601 (759)
+++.|||+|.. .++..|... +..|.+++.++.-++..++.-... ...+...+..|..+.+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--------- 70 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV--------- 70 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH---------
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh---------
Confidence 68999999944 555566665 359999999999988887653211 0111222334433332
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEE
Q 004354 602 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 674 (759)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv 674 (759)
...|+||+=+ +.....+.++.++..|+++-+++
T Consensus 71 ---------------------------~~aD~iii~v-------------~~~~~~~~~~~i~~~l~~~~~iv 103 (184)
T d1bg6a2 71 ---------------------------KDADVILIVV-------------PAIHHASIAANIASYISEGQLII 103 (184)
T ss_dssp ---------------------------TTCSEEEECS-------------CGGGHHHHHHHHGGGCCTTCEEE
T ss_pred ---------------------------cCCCEEEEEE-------------chhHHHHHHHHhhhccCCCCEEE
Confidence 3479999921 12235889999999999887665
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.18 E-value=0.59 Score=45.30 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=70.1
Q ss_pred CCCeEEEECCCcc---hhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cc
Q 004354 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G---~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gt 131 (759)
.+..+|-.|++.| ..+..|++.|+.-+.+.+-++..++.+.+.....+.++.++.+|+++.. +.
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 84 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG 84 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcCC
Confidence 4678898897776 5777788889963334567888788877777677778999999998865 88
Q ss_pred ccEEEeCCC----------Ch--hH---------HHHHHHHHHHhcccCcEEEEEE
Q 004354 132 LDALMEPEL----------GH--KL---------GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 132 fD~Ii~~~~----------~~--~~---------~~~~l~ei~rvLkpGG~liiit 166 (759)
.|+++.+.. .. +. .-.+.+.+...|+.+|..+++.
T Consensus 85 idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 85 LDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp EEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence 999997531 00 00 3445566667777777766654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.06 E-value=0.6 Score=45.42 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=57.0
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--------------C
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------------G 130 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--------------g 130 (759)
++..+|--|++.|. .+..|++.|+. |+.+|.++.-++.+.+.......++.+..+|+++.. +
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g 85 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGAV-IHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG 85 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence 46789999988775 66777888985 999999999998888777666678999999998765 5
Q ss_pred cccEEEeC
Q 004354 131 GLDALMEP 138 (759)
Q Consensus 131 tfD~Ii~~ 138 (759)
..|+++.+
T Consensus 86 ~idilvnn 93 (259)
T d1xq1a_ 86 KLDILINN 93 (259)
T ss_dssp CCSEEEEE
T ss_pred Cccccccc
Confidence 78999975
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=88.86 E-value=0.68 Score=41.83 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=61.4
Q ss_pred CCCCeEEEEccccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 528 GKSVKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 528 ~~~~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
....+|||.|.|+| .+...+.+.. ..+|.+++.+++-.+.+++. |- +.-+.....|-.+-+++..
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~l-Ga--~~vi~~~~~d~~~~v~~~t--------- 93 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA-GA--WQVINYREEDLVERLKEIT--------- 93 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH-TC--SEEEETTTSCHHHHHHHHT---------
T ss_pred CCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhc-CC--eEEEECCCCCHHHHHHHHh---------
Confidence 34468999987765 4444555554 46999999999999999875 53 2212112234445555543
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
.+..+|+|+ |+-.+ +.+......|+++|.+++
T Consensus 94 ---------------------~g~g~d~v~-d~~g~----------------~~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 94 ---------------------GGKKVRVVY-DSVGR----------------DTWERSLDCLQRRGLMVS 125 (179)
T ss_dssp ---------------------TTCCEEEEE-ECSCG----------------GGHHHHHHTEEEEEEEEE
T ss_pred ---------------------CCCCeEEEE-eCccH----------------HHHHHHHHHHhcCCeeee
Confidence 146788754 44322 346778889999997654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.62 E-value=0.96 Score=43.52 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=58.2
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cc
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gt 131 (759)
.+..+|--|++.|. ++..|++.|+. |+.+|.++.-++...+.....+.++.++.+|+++.. +.
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~~-V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~ 84 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD 84 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 45678888988875 66777888985 999999999998888877667778999999999876 78
Q ss_pred ccEEEeCC
Q 004354 132 LDALMEPE 139 (759)
Q Consensus 132 fD~Ii~~~ 139 (759)
.|.++.+.
T Consensus 85 idilinna 92 (244)
T d1yb1a_ 85 VSILVNNA 92 (244)
T ss_dssp CSEEEECC
T ss_pred CceeEeec
Confidence 99988754
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=88.19 E-value=0.97 Score=43.79 Aligned_cols=70 Identities=19% Similarity=0.177 Sum_probs=56.4
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------C-
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------G- 130 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------g- 130 (759)
.+..+|--|++.|. ++..|++.|++ |+.+|.++..++.+.+.......++.++.+|+++.. +
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~ 85 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGAS-VYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG 85 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 46788999988764 56777788985 999999999998888877666778889999998755 4
Q ss_pred cccEEEeC
Q 004354 131 GLDALMEP 138 (759)
Q Consensus 131 tfD~Ii~~ 138 (759)
..|+++.+
T Consensus 86 ~idilvnn 93 (259)
T d2ae2a_ 86 KLNILVNN 93 (259)
T ss_dssp CCCEEEEC
T ss_pred CceEEEEC
Confidence 78999975
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=87.71 E-value=0.34 Score=43.75 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=60.3
Q ss_pred CCCCCeEEEECCCc-chhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC------CcccEEEe
Q 004354 66 SSPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------GGLDALME 137 (759)
Q Consensus 66 ~~~~~~ILDlGCG~-G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~------gtfD~Ii~ 137 (759)
.+++.+||-+|||. |.++..+++. |++ ++++|.++.-.+.+++.- .. .++ |..+.. ..+|.++.
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~-~i~~~~~~~~~~~a~~lG----ad-~~i--~~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAH-VVAFTTSEAKREAAKALG----AD-EVV--NSRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHT----CS-EEE--ETTCHHHHHTTTTCEEEEEE
T ss_pred CCCCCEEEEeccchHHHHHHHHhhccccc-chhhccchhHHHHHhccC----Cc-EEE--ECchhhHHHHhcCCCceeee
Confidence 36889999999975 6666777765 665 778999988777665432 11 122 222211 57999987
Q ss_pred CCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 138 PELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 138 ~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
..... ..+....++|+++|+++++..
T Consensus 100 ~~g~~----~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 100 TVAAP----HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp CCSSC----CCHHHHHTTEEEEEEEEECCC
T ss_pred eeecc----hhHHHHHHHHhcCCEEEEecc
Confidence 54321 236667789999999998864
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.61 E-value=0.81 Score=41.41 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=59.6
Q ss_pred CCCCeEEEEcccc--cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 528 GKSVKAVVIGLGA--GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 528 ~~~~~vLviGlG~--G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
....+|||.|+.+ |.+..-+...+. .++.++.-+++-.+.++++ |. +.-+...-.|-.+.+.+..
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~~~~~~~l~~~-Ga--~~vi~~~~~~~~~~v~~~t--------- 90 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRL-GV--EYVGDSRSVDFADEILELT--------- 90 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTT-CC--SEEEETTCSTHHHHHHHHT---------
T ss_pred CCCCEEEEECCCCCcccccchhhcccc-ccceeeecccccccccccc-cc--cccccCCccCHHHHHHHHh---------
Confidence 4456899988533 445555555543 5777777788888999864 54 2111112234445554433
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
.+..+|+|+- .-. .+.++.+.+.|+++|.++.
T Consensus 91 ---------------------~~~g~d~v~d-~~g----------------~~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 91 ---------------------DGYGVDVVLN-SLA----------------GEAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp ---------------------TTCCEEEEEE-CCC----------------THHHHHHHHTEEEEEEEEE
T ss_pred ---------------------CCCCEEEEEe-ccc----------------chHHHHHHHHhcCCCEEEE
Confidence 1467999985 111 2467778899999998774
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.60 E-value=1.1 Score=43.28 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=54.5
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHh-ccCCCCcEEEEeecccCC-------------C
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRN-VRDRSDMRWRVMDMTSMQ-------------G 130 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~-~~~~~~i~f~~~D~~~~~-------------g 130 (759)
.+..+|--|++.|. .+..|++.|+. |+.+|.++..++...+.. .....++.++.+|+++.. +
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 82 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG 82 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46789999988763 56777888985 999999998887666554 233557888999998865 7
Q ss_pred cccEEEeCC
Q 004354 131 GLDALMEPE 139 (759)
Q Consensus 131 tfD~Ii~~~ 139 (759)
..|+++.+.
T Consensus 83 ~iDiLVnnA 91 (251)
T d1vl8a_ 83 KLDTVVNAA 91 (251)
T ss_dssp CCCEEEECC
T ss_pred CCCEEEECC
Confidence 899999753
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.57 E-value=0.41 Score=46.37 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=45.4
Q ss_pred hHHHHHHhhcCCCCCCCCeEEEECCCcchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcc
Q 004354 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR 113 (759)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~ 113 (759)
+...+.+... .+++.|||.=||+|..+......|- +.+|+|+++..++.|++|+..
T Consensus 196 L~~~~I~~~s----~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 196 VIERLVRALS----HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp HHHHHHHHHS----CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHH
T ss_pred HHHHHHHhhc----CCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 3444444443 4789999999999999998888865 699999999999999998854
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=87.56 E-value=0.88 Score=41.03 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=61.7
Q ss_pred CCCCCeEEEECCC--cchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----------Cc
Q 004354 66 SSPPPQILVPGCG--NSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------GG 131 (759)
Q Consensus 66 ~~~~~~ILDlGCG--~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----------gt 131 (759)
..++.+||-.|+| .|.++..+++. |+ +|+++|.|+.-.+.+++.-. + .+.|..+.. ..
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa------~-~vi~~~~~d~~~~v~~~t~g~g 97 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGA------W-QVINYREEDLVERLKEITGGKK 97 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTC------S-EEEETTTSCHHHHHHHHTTTCC
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCC------e-EEEECCCCCHHHHHHHHhCCCC
Confidence 3678899999666 57777888776 66 59999999998887765421 1 122333222 46
Q ss_pred ccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 132 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 132 fD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+|+|+..... ..+......|+++|++++...
T Consensus 98 ~d~v~d~~g~-----~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 98 VRVVYDSVGR-----DTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp EEEEEECSCG-----GGHHHHHHTEEEEEEEEECCC
T ss_pred eEEEEeCccH-----HHHHHHHHHHhcCCeeeeccc
Confidence 8988876532 356778889999999876543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=86.46 E-value=2 Score=38.49 Aligned_cols=93 Identities=18% Similarity=0.053 Sum_probs=57.6
Q ss_pred CCCCCCeEEEECCCcchhH-HHHHH-hCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEE-eecccCC---------Ccc
Q 004354 65 TSSPPPQILVPGCGNSRLS-EHLYD-AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV-MDMTSMQ---------GGL 132 (759)
Q Consensus 65 ~~~~~~~ILDlGCG~G~ls-~~L~~-~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~-~D~~~~~---------gtf 132 (759)
+.+++++||-+|||.+.++ ..++. .|...|+++|.++.-.+.+++.-. -..+. .+..+.. +.+
T Consensus 25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga-----~~~i~~~~~~~~~~~~~~~~~~~G~ 99 (176)
T d2jhfa2 25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA-----TECVNPQDYKKPIQEVLTEMSNGGV 99 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----SEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC-----eeEEecCCchhHHHHHHHHHhcCCC
Confidence 3478899999999755433 33333 477789999999988877755421 11111 1111111 578
Q ss_pred cEEEeCCCChhHHHHHHHHHHHhcccCc-EEEEEE
Q 004354 133 DALMEPELGHKLGNQYLSEVKRLLKSGG-KFVCLT 166 (759)
Q Consensus 133 D~Ii~~~~~~~~~~~~l~ei~rvLkpGG-~liiit 166 (759)
|+++..... ...++.....+++|| .+++..
T Consensus 100 D~vid~~G~----~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 100 DFSFEVIGR----LDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp SEEEECSCC----HHHHHHHHHHBCTTTCEEEECS
T ss_pred CEEEecCCc----hhHHHHHHHHHhcCCcceEEec
Confidence 999986654 345666677888864 555443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=86.21 E-value=0.79 Score=44.46 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=56.3
Q ss_pred CCCeEEEECCCcc---hhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC--------------C
Q 004354 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------------G 130 (759)
Q Consensus 68 ~~~~ILDlGCG~G---~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~--------------g 130 (759)
.+.++|-.|+..| ..+..|++.|+ +|+.+|.++.-++.+.+........+.++.+|+.+.. +
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g 83 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG 83 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 4678999999877 36677788898 5999999999888887777667778889999998765 4
Q ss_pred cccEEEeC
Q 004354 131 GLDALMEP 138 (759)
Q Consensus 131 tfD~Ii~~ 138 (759)
..|+++.+
T Consensus 84 ~idilinn 91 (258)
T d1ae1a_ 84 KLNILVNN 91 (258)
T ss_dssp CCCEEEEC
T ss_pred CcEEEecc
Confidence 67787764
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=86.19 E-value=1.2 Score=43.08 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=65.5
Q ss_pred CCCeEEEECCCcc---hhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cc
Q 004354 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G---~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gt 131 (759)
.+..+|--|++.| ..+..|++.|++ |+.+|.++..++...+.+ ..+..++.+|+++.. +.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 80 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHh---CCCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 4567888887766 356667778885 999999998888776655 345778889998765 88
Q ss_pred ccEEEeCCC----------Ch--hH---------HHHHHHHHHHhcc-cCcEEEEEE
Q 004354 132 LDALMEPEL----------GH--KL---------GNQYLSEVKRLLK-SGGKFVCLT 166 (759)
Q Consensus 132 fD~Ii~~~~----------~~--~~---------~~~~l~ei~rvLk-pGG~liiit 166 (759)
.|+++.+.. .. |. .-.+.+.+...|+ .+|.++.++
T Consensus 81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~is 137 (253)
T d1hxha_ 81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMA 137 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceeccc
Confidence 999997531 01 11 2233455556664 578888775
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=86.13 E-value=6.8 Score=37.92 Aligned_cols=115 Identities=19% Similarity=0.272 Sum_probs=78.0
Q ss_pred HHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCC
Q 004354 544 PMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNG 622 (759)
Q Consensus 544 ~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (759)
|.+.++.+ +..++..+|+-|+-.+.-+++|.- +.|++|+..||.+.+...--
T Consensus 94 P~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~--~~~~~v~~~DG~~~l~allP------------------------- 146 (271)
T d2oo3a1 94 PYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLP------------------------- 146 (271)
T ss_dssp HHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCS-------------------------
T ss_pred HHHHHHhCCCCCceEEeecCHHHHHHHHHHhcc--CCCceEEcCchHHHHHhhCC-------------------------
Confidence 34444443 567999999999999999999864 78999999999999988640
Q ss_pred CCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccC--cCcEEEEEecCCChhHHHHHHHHHHHhcCce
Q 004354 623 NCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALS--EQGLFIVNLVSRSQATKDMVISRMKMVFNHL 699 (759)
Q Consensus 623 ~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~--~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v 699 (759)
...+=-+|++|--=.. ..+| ....+.+...++ +.|++++...--+....+.+.+.|+..=...
T Consensus 147 ----P~~rRgLVLIDPpYE~--------k~ey--~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~~~~~k~ 211 (271)
T d2oo3a1 147 ----PPEKRGLIFIDPSYER--------KEEY--KEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKS 211 (271)
T ss_dssp ----CTTSCEEEEECCCCCS--------TTHH--HHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSSE
T ss_pred ----CCCCceEEEecCCcCC--------HHHH--HHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHHhcCccc
Confidence 1234459999631110 1111 223444444443 5899999886667777777888887765543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=86.11 E-value=0.84 Score=39.14 Aligned_cols=51 Identities=25% Similarity=0.311 Sum_probs=37.7
Q ss_pred CeEEEEccc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHH
Q 004354 531 VKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 590 (759)
Q Consensus 531 ~~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~ 590 (759)
++++|+|+| |-.++..|... +..+++||.||+.++.+++.+ ..++++|+.+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~--g~~vvvid~d~~~~~~~~~~~-------~~~~~gd~~~ 53 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYASYA-------THAVIANATE 53 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHHTTTTC-------SEEEECCTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEecCcHHHHHHHHHhC-------Ccceeeeccc
Confidence 468899888 33666677665 358999999999999886432 3678888754
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=86.04 E-value=1.1 Score=38.30 Aligned_cols=91 Identities=11% Similarity=0.044 Sum_probs=53.7
Q ss_pred eEEEECCCc-ch-hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------CcccEEEeCCCC
Q 004354 71 QILVPGCGN-SR-LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------GGLDALMEPELG 141 (759)
Q Consensus 71 ~ILDlGCG~-G~-ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------gtfD~Ii~~~~~ 141 (759)
+++-+|||. |. ++..|.+.|.. |+.+|.++..++.++. .....+.+|.++.. ...|++++....
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~~-vvvid~d~~~~~~~~~------~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~ 74 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNAYAS------YATHAVIANATEENELLSLGIRNFEYVIVAIGA 74 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCC-CEEEESCHHHHHHTTT------TCSEEEECCTTCTTHHHHHTGGGCSEEEECCCS
T ss_pred EEEEECCCHHHHHHHHHHHHCCCe-EEEecCcHHHHHHHHH------hCCcceeeecccchhhhccCCccccEEEEEcCc
Confidence 456666653 21 33344455775 9999999988776532 23467889998876 578877764432
Q ss_pred hhHHHHHHHHHHHhcccCcEEEEEEcCc
Q 004354 142 HKLGNQYLSEVKRLLKSGGKFVCLTLAE 169 (759)
Q Consensus 142 ~~~~~~~l~ei~rvLkpGG~liiit~~~ 169 (759)
... ...+..+.+.+.+...++......
T Consensus 75 ~~~-~~~~~~~~~~~~~~~~iiar~~~~ 101 (134)
T d2hmva1 75 NIQ-ASTLTTLLLKELDIPNIWVKAQNY 101 (134)
T ss_dssp CHH-HHHHHHHHHHHTTCSEEEEECCSH
T ss_pred hHH-hHHHHHHHHHHcCCCcEEeecccH
Confidence 222 233333444455666666555443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.78 E-value=2 Score=41.14 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=53.2
Q ss_pred CCeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeecccCC-------------C
Q 004354 69 PPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-------------G 130 (759)
Q Consensus 69 ~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~--~~~i~f~~~D~~~~~-------------g 130 (759)
+..+|--|++.|. .+..|++.|+. |+.+|.++..++...+..... ..++.++.+|+++.. +
T Consensus 3 GKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 3 GKVALVTGAAQGIGRAFAEALLLKGAK-VALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 5678888987654 44566677885 999999999888777766443 346888999998865 8
Q ss_pred cccEEEeCC
Q 004354 131 GLDALMEPE 139 (759)
Q Consensus 131 tfD~Ii~~~ 139 (759)
..|+++.+.
T Consensus 82 ~iDilVnnA 90 (254)
T d2gdza1 82 RLDILVNNA 90 (254)
T ss_dssp CCCEEEECC
T ss_pred CcCeecccc
Confidence 899999754
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=85.77 E-value=0.36 Score=44.05 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=63.6
Q ss_pred CCCeEEEECCCc-chhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---CcccEEEeCCCCh
Q 004354 68 PPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---GGLDALMEPELGH 142 (759)
Q Consensus 68 ~~~~ILDlGCG~-G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---gtfD~Ii~~~~~~ 142 (759)
++.+|+-||+|. |..+...+.. |. +|+.+|.++..+++...... .++++...+-..+. ...|+|+..-...
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~---~~~~~~~~~~~~l~~~~~~aDivI~aalip 106 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFG---SRVELLYSNSAEIETAVAEADLLIGAVLVP 106 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhc---ccceeehhhhhhHHHhhccCcEEEEeeecC
Confidence 468999999997 5555555544 54 69999999999988766653 34566555443333 6799999854211
Q ss_pred hH--HHHHHHHHHHhcccCcEEEEEE
Q 004354 143 KL--GNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 143 ~~--~~~~l~ei~rvLkpGG~liiit 166 (759)
-. +.-+-+++.+.+|||..++=+.
T Consensus 107 G~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 107 GRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp TSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CcccCeeecHHHHhhcCCCcEEEEee
Confidence 11 2223467778899999876443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=85.39 E-value=1.2 Score=42.65 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=51.3
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cc
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gt 131 (759)
.+..+|--|++.|. ++..|++.|++ |+.+|.++..++...+.+. .+..++.+|+++.. +.
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~~-Vv~~~r~~~~l~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGAK-VIGTATSENGAQAISDYLG---ANGKGLMLNVTDPASIESVLEKIRAEFGE 78 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHhC---CCCcEEEEEecCHHHhhhhhhhhhcccCC
Confidence 35677888887663 55677778885 9999999998887766652 35678899998865 78
Q ss_pred ccEEEeC
Q 004354 132 LDALMEP 138 (759)
Q Consensus 132 fD~Ii~~ 138 (759)
.|+++.+
T Consensus 79 iDilVnn 85 (243)
T d1q7ba_ 79 VDILVNN 85 (243)
T ss_dssp CSEEEEC
T ss_pred cceehhh
Confidence 9999975
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=85.32 E-value=2.5 Score=37.65 Aligned_cols=90 Identities=18% Similarity=0.079 Sum_probs=55.4
Q ss_pred CCCCCCeEEEECCCcchhHHH-HH-HhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----------Ccc
Q 004354 65 TSSPPPQILVPGCGNSRLSEH-LY-DAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------GGL 132 (759)
Q Consensus 65 ~~~~~~~ILDlGCG~G~ls~~-L~-~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----------gtf 132 (759)
+.+++.+||-+|||.+.++.. ++ ..|...|+++|.++.-++.+++.-. -.++...-.+.. +.+
T Consensus 25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA-----d~~in~~~~~~~~~~~~~~~~~~G~ 99 (175)
T d1cdoa2 25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA-----TDFVNPNDHSEPISQVLSKMTNGGV 99 (175)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----CEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC-----cEEEcCCCcchhHHHHHHhhccCCc
Confidence 347889999999998655543 33 3467789999999988877765321 122211111111 468
Q ss_pred cEEEeCCCChhHHHHHHHHHHHhcccCcEEE
Q 004354 133 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 163 (759)
Q Consensus 133 D~Ii~~~~~~~~~~~~l~ei~rvLkpGG~li 163 (759)
|+++-.... ...+......+++||..+
T Consensus 100 d~vid~~G~----~~~~~~a~~~~~~g~~~~ 126 (175)
T d1cdoa2 100 DFSLECVGN----VGVMRNALESCLKGWGVS 126 (175)
T ss_dssp SEEEECSCC----HHHHHHHHHTBCTTTCEE
T ss_pred ceeeeecCC----HHHHHHHHHHhhCCCcce
Confidence 988876543 345666667766664433
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=85.23 E-value=1.6 Score=41.65 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=54.0
Q ss_pred eEEEECCCcch---hHHHHHHhCCC------eEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC------------
Q 004354 71 QILVPGCGNSR---LSEHLYDAGFH------GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------------ 129 (759)
Q Consensus 71 ~ILDlGCG~G~---ls~~L~~~G~~------~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~------------ 129 (759)
-||--|++.|. ++..|++.|++ .|+.++.++..++...+.....+.++.++.+|+++..
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER 82 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 36777887764 45667777875 3889999999998887777666678889999999876
Q ss_pred -CcccEEEeCC
Q 004354 130 -GGLDALMEPE 139 (759)
Q Consensus 130 -gtfD~Ii~~~ 139 (759)
|..|+++.+.
T Consensus 83 ~g~iDilvnnA 93 (240)
T d2bd0a1 83 YGHIDCLVNNA 93 (240)
T ss_dssp TSCCSEEEECC
T ss_pred cCCcceeeccc
Confidence 8899999753
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=85.23 E-value=1.7 Score=41.66 Aligned_cols=69 Identities=9% Similarity=0.099 Sum_probs=53.5
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cc
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gt 131 (759)
.+..+|--|++.|. .+..|++.|+. |+.+|.++..++.+.+.... ..++.++.+|+++.. |.
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 82 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 35678888876653 45667778885 99999999998887776643 457899999998865 88
Q ss_pred ccEEEeC
Q 004354 132 LDALMEP 138 (759)
Q Consensus 132 fD~Ii~~ 138 (759)
.|+++.+
T Consensus 83 iDiLVnn 89 (251)
T d1zk4a1 83 VSTLVNN 89 (251)
T ss_dssp CCEEEEC
T ss_pred ceEEEec
Confidence 9999874
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=84.95 E-value=2.7 Score=37.32 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=33.9
Q ss_pred CCCCeEEEEcccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC
Q 004354 528 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 575 (759)
Q Consensus 528 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl 575 (759)
....+|||+|.|+ |.+...+.+.+ ..++.+++-++.-.+.|++ +|.
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~-lGa 75 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA-LGA 75 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH-HTC
T ss_pred CCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhc-cCC
Confidence 4567899999863 45666666666 4577789999999999876 453
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=84.89 E-value=2 Score=38.89 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=62.5
Q ss_pred CCCCeEEEEccccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004354 528 GKSVKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 605 (759)
Q Consensus 528 ~~~~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~ 605 (759)
....+|||.|.|+| .....|.+... .++.++.-+++-.+.+++. |. +.-+.....|-.+.+.+..
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~~~~~~~~~~~-Ga--~~vi~~~~~~~~~~~~~~~--------- 94 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQI-GF--DAAFNYKTVNSLEEALKKA--------- 94 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TC--SEEEETTSCSCHHHHHHHH---------
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCCHHHHHHHHhh-hh--hhhcccccccHHHHHHHHh---------
Confidence 44578999999775 45556666654 5999999999999998776 32 2111111222233333322
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEE
Q 004354 606 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 675 (759)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~ 675 (759)
....+|+||- .- + .+.++.+.++|+++|.+++
T Consensus 95 ---------------------~~~Gvd~v~D-~v-G---------------~~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 95 ---------------------SPDGYDCYFD-NV-G---------------GEFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp ---------------------CTTCEEEEEE-SS-C---------------HHHHHHHGGGEEEEEEEEE
T ss_pred ---------------------hcCCCceeEE-ec-C---------------chhhhhhhhhccCCCeEEe
Confidence 1356999765 11 1 5688999999999998774
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.65 E-value=0.94 Score=40.96 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=58.5
Q ss_pred CCCCCeEEEECC--CcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-----------Cc
Q 004354 66 SSPPPQILVPGC--GNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------GG 131 (759)
Q Consensus 66 ~~~~~~ILDlGC--G~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-----------gt 131 (759)
.+++.+||-.|. |.|.++..+++. |++ +++++-++.-.+.+++. +.. .. .|..+.. ..
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~-vi~~~~~~~~~~~l~~~----Ga~-~v--i~~~~~~~~~~v~~~t~~~g 94 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIGAR-IYTTAGSDAKREMLSRL----GVE-YV--GDSRSVDFADEILELTDGYG 94 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCE-EEEEESSHHHHHHHHTT----CCS-EE--EETTCSTHHHHHHHHTTTCC
T ss_pred CCCCCEEEEECCCCCcccccchhhcccccc-ceeeecccccccccccc----ccc-cc--ccCCccCHHHHHHHHhCCCC
Confidence 367889999873 456777777765 664 88888788766665432 221 11 2222222 46
Q ss_pred ccEEEeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 132 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 132 fD~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+|+|+..... ..++.+.++|+++|+++.+.
T Consensus 95 ~d~v~d~~g~-----~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 95 VDVVLNSLAG-----EAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp EEEEEECCCT-----HHHHHHHHTEEEEEEEEECS
T ss_pred EEEEEecccc-----hHHHHHHHHhcCCCEEEEEc
Confidence 9999986542 35677789999999988864
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.30 E-value=0.79 Score=44.40 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=55.4
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cc
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gt 131 (759)
.+..+|--|.+.|. .+..|++.|+. |+.+|.++..++.+.+.+...+.++.++.+|+++.. +.
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~ 88 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK 88 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45678887876654 44566677885 999999999998888777666678899999998865 78
Q ss_pred ccEEEeCC
Q 004354 132 LDALMEPE 139 (759)
Q Consensus 132 fD~Ii~~~ 139 (759)
.|+++.+.
T Consensus 89 iDilvnnA 96 (255)
T d1fmca_ 89 VDILVNNA 96 (255)
T ss_dssp CCEEEECC
T ss_pred CCEeeeCC
Confidence 99988753
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.20 E-value=1.1 Score=43.34 Aligned_cols=66 Identities=18% Similarity=0.345 Sum_probs=52.7
Q ss_pred EEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------CcccEE
Q 004354 72 ILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GGLDAL 135 (759)
Q Consensus 72 ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gtfD~I 135 (759)
+|--|++.|. .+..|++.|+. |+.+|.++..++...+.+...+.++.++.+|+++.. +..|++
T Consensus 4 alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 82 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDGFA-VAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVI 82 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEcCCccHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence 4777877654 44666777885 999999999998887777666678899999999865 789999
Q ss_pred EeC
Q 004354 136 MEP 138 (759)
Q Consensus 136 i~~ 138 (759)
+.+
T Consensus 83 Vnn 85 (255)
T d1gega_ 83 VNN 85 (255)
T ss_dssp EEC
T ss_pred Eec
Confidence 964
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.18 E-value=2 Score=36.30 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=54.4
Q ss_pred CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCcee
Q 004354 553 FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVD 632 (759)
Q Consensus 553 ~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD 632 (759)
+.+|-+||=|+.+.+..++++.- .+-.+ ....||.+.++... ...||
T Consensus 1 nirILiVdDd~~~~~~l~~~L~~-~g~~v-~~a~~~~~al~~l~-------------------------------~~~~d 47 (122)
T d1kgsa2 1 NVRVLVVEDERDLADLITEALKK-EMFTV-DVCYDGEEGMYMAL-------------------------------NEPFD 47 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHH-TTCEE-EEESSHHHHHHHHH-------------------------------HSCCS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH-CCCEE-EEEcchHHHHHHHH-------------------------------hhCcc
Confidence 35899999999999999998831 11123 35678888777765 25799
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 633 ILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 633 ~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
+|++|+.=++. -..++++.++..-..--++++-
T Consensus 48 lillD~~mp~~-----------~g~~~~~~lr~~~~~~piI~lt 80 (122)
T d1kgsa2 48 VVILDIMLPVH-----------DGWEILKSMRESGVNTPVLMLT 80 (122)
T ss_dssp EEEEESCCSSS-----------CHHHHHHHHHHTTCCCCEEEEE
T ss_pred ccccccccccc-----------hhHHHHHHHHhcCCCCcEEEEc
Confidence 99999865543 2367888887654333355443
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=84.03 E-value=1.2 Score=43.04 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=54.1
Q ss_pred CeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cccc
Q 004354 70 PQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GGLD 133 (759)
Q Consensus 70 ~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gtfD 133 (759)
..+|--|++.|. .+..|++.|+. |+.+|.++..++...+.+...+.++.++.+|+++.. +..|
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 81 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLR-VFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD 81 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence 355777876654 55667778985 999999999998888777666678999999998876 7899
Q ss_pred EEEeC
Q 004354 134 ALMEP 138 (759)
Q Consensus 134 ~Ii~~ 138 (759)
+++.+
T Consensus 82 ilVnn 86 (257)
T d2rhca1 82 VLVNN 86 (257)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99865
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=83.92 E-value=2.5 Score=38.19 Aligned_cols=91 Identities=13% Similarity=0.090 Sum_probs=62.3
Q ss_pred CCCCCeEEEECCCc--chhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---------Cccc
Q 004354 66 SSPPPQILVPGCGN--SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---------GGLD 133 (759)
Q Consensus 66 ~~~~~~ILDlGCG~--G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---------gtfD 133 (759)
.+++++||-.|+|. |..+..+++. |+ +|++++-+++-++.+++.- . -..+.-+-.+.. ..+|
T Consensus 27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~G----a-~~vi~~~~~~~~~~~~~~~~~~Gvd 100 (182)
T d1v3va2 27 VKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIG----F-DAAFNYKTVNSLEEALKKASPDGYD 100 (182)
T ss_dssp CCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTT----C-SEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhh----h-hhhcccccccHHHHHHHHhhcCCCc
Confidence 36889999988854 6677777776 55 6999999998777665542 1 112221111111 5699
Q ss_pred EEEeCCCChhHHHHHHHHHHHhcccCcEEEEEEc
Q 004354 134 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 167 (759)
Q Consensus 134 ~Ii~~~~~~~~~~~~l~ei~rvLkpGG~liiit~ 167 (759)
+|+-.-. ...++...++|++||+++++..
T Consensus 101 ~v~D~vG-----~~~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 101 CYFDNVG-----GEFLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp EEEESSC-----HHHHHHHGGGEEEEEEEEECCC
T ss_pred eeEEecC-----chhhhhhhhhccCCCeEEeecc
Confidence 9987543 3578899999999999998753
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=83.84 E-value=5.1 Score=33.65 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=55.0
Q ss_pred CCcEEEEEcCHHHHHHHHhhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCcee
Q 004354 553 FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVD 632 (759)
Q Consensus 553 ~~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD 632 (759)
+.+|-+||=||.+.+.-++++.- .+-++ ....+|.+.++... ..+||
T Consensus 3 ~~~ILiVDDd~~~~~~l~~~L~~-~g~~v-~~a~~~~~al~~~~-------------------------------~~~~d 49 (123)
T d1dbwa_ 3 DYTVHIVDDEEPVRKSLAFMLTM-NGFAV-KMHQSAEAFLAFAP-------------------------------DVRNG 49 (123)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHH-TTCEE-EEESCHHHHHHHGG-------------------------------GCCSE
T ss_pred CCEEEEEECCHHHHHHHHHHHHH-CCCEE-EEECCHHHHHHHHh-------------------------------hcCCc
Confidence 45899999999999999988731 11133 34568888887765 25799
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 633 ILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 633 ~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
+||+|+.=++-. -.++++.+++.-..--++++-
T Consensus 50 lvi~D~~mp~~~-----------G~e~~~~lr~~~~~~~iI~lt 82 (123)
T d1dbwa_ 50 VLVTDLRMPDMS-----------GVELLRNLGDLKINIPSIVIT 82 (123)
T ss_dssp EEEEECCSTTSC-----------HHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEEeccCcccc-----------chHHHHHHHhcCCCCeEEEEE
Confidence 999999766432 278999998753323344443
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.82 E-value=0.52 Score=45.57 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=44.8
Q ss_pred eEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCC-CCCCCCCCCcCCCCCC--hH
Q 004354 581 LKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD-SPDSSSGMTCPAADFV--EG 657 (759)
Q Consensus 581 l~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~-s~d~~~g~scPp~~f~--~~ 657 (759)
=.++++|.++.|+.+. +..+|+|+.|.- .......- -...++ ..
T Consensus 5 ~~~~~~D~le~l~~l~-------------------------------d~SIDliitDPPYn~~~~~~~--~~~~y~~~~~ 51 (279)
T d1eg2a_ 5 HVYDVCDCLDTLAKLP-------------------------------DDSVQLIICDPPYNIMLADWD--DHMDYIGWAK 51 (279)
T ss_dssp EEEEECCHHHHHHTSC-------------------------------TTCEEEEEECCCSBCCGGGGG--TCSSHHHHHH
T ss_pred ceEEechHHHHHhhCc-------------------------------CCCccEEEECCCCCCCccccc--CHHHHHHHHH
Confidence 3578899999999886 477999999762 11000000 011222 35
Q ss_pred HHHHHHHHccCcCcEEEEEecC
Q 004354 658 SFLLTVKDALSEQGLFIVNLVS 679 (759)
Q Consensus 658 ~fl~~~~~~L~~~Gilv~N~~~ 679 (759)
.++..+++.|+|+|.+++|...
T Consensus 52 ~~~~e~~rvLk~~G~~~~~~~~ 73 (279)
T d1eg2a_ 52 RWLAEAERVLSPTGSIAIFGGL 73 (279)
T ss_dssp HHHHHHHHHEEEEEEEEEEECS
T ss_pred HHHHHHHHHhCCCccEEEecCc
Confidence 6788899999999999998743
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=83.76 E-value=0.61 Score=45.83 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=46.0
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCC-CCCCCCCCCcC-CCCCC--
Q 004354 580 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD-SPDSSSGMTCP-AADFV-- 655 (759)
Q Consensus 580 rl~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~-s~d~~~g~scP-p~~f~-- 655 (759)
.-++++||.+++|+.++ +..+|+|+.|.- .........-. ...++
T Consensus 12 ~~~l~~GD~le~l~~l~-------------------------------~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~ 60 (320)
T d1booa_ 12 NGSMYIGDSLELLESFP-------------------------------EESISLVMTSPPFALQRKKEYGNLEQHEYVDW 60 (320)
T ss_dssp SEEEEESCHHHHGGGSC-------------------------------SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHH
T ss_pred CCEEEehhHHHHHhhCc-------------------------------cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHH
Confidence 45999999999999876 368999999862 11100000000 00111
Q ss_pred hHHHHHHHHHccCcCcEEEEEecCC
Q 004354 656 EGSFLLTVKDALSEQGLFIVNLVSR 680 (759)
Q Consensus 656 ~~~fl~~~~~~L~~~Gilv~N~~~~ 680 (759)
-.+.+..+++.|+|+|.+++|+...
T Consensus 61 ~~~~l~~~~rvLk~~G~i~i~~~~~ 85 (320)
T d1booa_ 61 FLSFAKVVNKKLKPDGSFVVDFGGA 85 (320)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHhCcccCcccccccch
Confidence 1456888999999999999998543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=83.75 E-value=1.5 Score=42.36 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=52.3
Q ss_pred CCCeEEEECCCcc---hhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cc
Q 004354 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G---~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gt 131 (759)
.+..+|--|.+.| ..+..|++.|++ |+.+|.++..++...+.+ ..++.++.+|+++.. +.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEFGS 79 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHh---CCceEEEEcccCCHHHHHHHHHHHHHHcCC
Confidence 4678999999887 456777888985 999999998776654443 346889999998865 78
Q ss_pred ccEEEeC
Q 004354 132 LDALMEP 138 (759)
Q Consensus 132 fD~Ii~~ 138 (759)
.|+++.+
T Consensus 80 iDilVnn 86 (254)
T d1hdca_ 80 VDGLVNN 86 (254)
T ss_dssp CCEEEEC
T ss_pred ccEEEec
Confidence 9988864
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.62 E-value=1.2 Score=42.78 Aligned_cols=66 Identities=18% Similarity=0.336 Sum_probs=53.0
Q ss_pred CCCeEEEECCCcc---hhHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC---------CcccEE
Q 004354 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---------GGLDAL 135 (759)
Q Consensus 68 ~~~~ILDlGCG~G---~ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~---------gtfD~I 135 (759)
.+.++|-.|++.| ..+..|++.|++ |+.+|.++.-++...+.. +++.+++.|+.+.. +..|++
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~~-V~~~~r~~~~l~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~g~iDil 80 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSRTQADLDSLVREC----PGIEPVCVDLGDWEATERALGSVGPVDLL 80 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHhc----CCCeEEEEeCCCHHHHHHHHHHhCCceEE
Confidence 4678999998877 466777888985 999999998887765554 46888999998865 889999
Q ss_pred EeC
Q 004354 136 MEP 138 (759)
Q Consensus 136 i~~ 138 (759)
+.+
T Consensus 81 Vnn 83 (244)
T d1pr9a_ 81 VNN 83 (244)
T ss_dssp EEC
T ss_pred Eec
Confidence 864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=83.18 E-value=3.3 Score=36.80 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=59.8
Q ss_pred CeEEEECCCcch--hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc--cCCCCcEEE------EeecccCCCcccEEEeCC
Q 004354 70 PQILVPGCGNSR--LSEHLYDAGFHGITNVDFSKVVISDMLRRNV--RDRSDMRWR------VMDMTSMQGGLDALMEPE 139 (759)
Q Consensus 70 ~~ILDlGCG~G~--ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~--~~~~~i~f~------~~D~~~~~gtfD~Ii~~~ 139 (759)
.+|--+|||+-. ++..|++.|+ +|+.+|.++.-++.+++... ...+..... ..|..+.-...|+|+..-
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence 578899999855 4455677787 59999999988887765421 111111111 111111116789999753
Q ss_pred CChhHHHHHHHHHHHhcccCcEEEE
Q 004354 140 LGHKLGNQYLSEVKRLLKSGGKFVC 164 (759)
Q Consensus 140 ~~~~~~~~~l~ei~rvLkpGG~lii 164 (759)
.......+++++...|+++-.+++
T Consensus 81 -~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 81 -PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp -CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred -chhHHHHHHHHhhhccCCCCEEEE
Confidence 333468899999999998876553
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=82.95 E-value=2.4 Score=38.92 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=35.1
Q ss_pred CCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC
Q 004354 529 KSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 574 (759)
Q Consensus 529 ~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg 574 (759)
.|.+|||||.|.- .-+......+ ...|++.|+++..++..+..++
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~ 73 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGG 73 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTC
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhc
Confidence 5789999999955 4444444444 4699999999999999998874
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=82.50 E-value=0.6 Score=44.42 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=42.1
Q ss_pred EEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcCCCCCC---CCCCCcCCCCCC--h
Q 004354 582 KVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS---SSGMTCPAADFV--E 656 (759)
Q Consensus 582 ~v~i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~~s~d~---~~g~scPp~~f~--~ 656 (759)
+++.||.+++|+.+. +..+|+|+.|.-=... ..... ....++ .
T Consensus 6 ~i~~gDcle~l~~lp-------------------------------d~sVdliitdPPY~~~~~~~d~~~-~~~~y~~~~ 53 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVE-------------------------------NKSVQLAVIDPPYNLSKADWDSFD-SHNEFLAFT 53 (256)
T ss_dssp SEEECCHHHHHHHSC-------------------------------TTCEEEEEECCCCSSCSSGGGCCS-SHHHHHHHH
T ss_pred EEEeccHHHHHhhCc-------------------------------CCCcCEEEECCCCCCCcCcCcCCC-CHHHHHHHH
Confidence 699999999999876 4679999997521100 00000 011111 2
Q ss_pred HHHHHHHHHccCcCcEEEEEe
Q 004354 657 GSFLLTVKDALSEQGLFIVNL 677 (759)
Q Consensus 657 ~~fl~~~~~~L~~~Gilv~N~ 677 (759)
.++++.+++.|+|+|.++++.
T Consensus 54 ~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 54 YRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhhhccccCccccccc
Confidence 357888999999999887665
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=82.41 E-value=0.79 Score=46.90 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcccCcEEEEEEcCch
Q 004354 145 GNQYLSEVKRLLKSGGKFVCLTLAES 170 (759)
Q Consensus 145 ~~~~l~ei~rvLkpGG~liiit~~~~ 170 (759)
...+|+.=.+-|+|||+++++.++.+
T Consensus 188 ~~~FL~~Ra~ELv~GG~mvl~~~gr~ 213 (359)
T d1m6ex_ 188 HALFLRCRAQEVVPGGRMVLTILGRR 213 (359)
T ss_dssp HHHHHHHHHHHBCTTCEEEEEEEECS
T ss_pred HHHHHHHHHHHhcCCcEEEEEEeccC
Confidence 55677777888999999999988754
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Probab=81.93 E-value=2.5 Score=35.54 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=55.5
Q ss_pred CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEE-EccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCcee
Q 004354 554 VGIEAVELDLTMLNLAEDYFGFTQDKSLKVH-ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVD 632 (759)
Q Consensus 554 ~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~-i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD 632 (759)
.+|-+||=||.+.+..++++.- ...+|. ..||.+.++.... ...||
T Consensus 3 ~rILvVdDd~~~~~~l~~~L~~---~g~~v~~~~~~~~al~~l~~------------------------------~~~~d 49 (118)
T d2b4aa1 3 FRVTLVEDEPSHATLIQYHLNQ---LGAEVTVHPSGSAFFQHRSQ------------------------------LSTCD 49 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH---TTCEEEEESSHHHHHHTGGG------------------------------GGSCS
T ss_pred CEEEEEECCHHHHHHHHHHHHh---cCCCeEEECCHHHHHHHHHh------------------------------cCCCC
Confidence 4899999999999999999832 223444 5578887776541 24699
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCcEEEEE
Q 004354 633 ILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 676 (759)
Q Consensus 633 ~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~Gilv~N 676 (759)
+||+|+.=++.. ..++++.+++.-..-.++++-
T Consensus 50 liilD~~lp~~~-----------G~el~~~ir~~~~~~pii~lt 82 (118)
T d2b4aa1 50 LLIVSDQLVDLS-----------IFSLLDIVKEQTKQPSVLILT 82 (118)
T ss_dssp EEEEETTCTTSC-----------HHHHHHHHTTSSSCCEEEEEE
T ss_pred EEEEeCCCCCCC-----------HHHHHHHHHhcCCCCcEEEEE
Confidence 999999766533 267888888764444566653
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=81.89 E-value=3.7 Score=43.77 Aligned_cols=118 Identities=8% Similarity=-0.011 Sum_probs=68.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC----CC--------------CcEEEEEcCHHHHHHHHhhcCCCC-C----CCeEEE
Q 004354 528 GKSVKAVVIGLGAGLLPMFLHECM----PF--------------VGIEAVELDLTMLNLAEDYFGFTQ-D----KSLKVH 584 (759)
Q Consensus 528 ~~~~~vLviGlG~G~l~~~L~~~~----p~--------------~~i~~VEiDp~v~~vA~~~Fgl~~-~----~rl~v~ 584 (759)
....+|+.-.+|+|.+...+.+++ .. ..+.++|+|+....+|+-.+-+.. + ..-.+.
T Consensus 163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~ 242 (524)
T d2ar0a1 163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 242 (524)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhh
Confidence 345689999999997765443332 11 258999999999999997663211 0 011222
Q ss_pred EccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEcC-CCCCC---CCCCCcCCCCCChHHHH
Q 004354 585 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV-DSPDS---SSGMTCPAADFVEGSFL 660 (759)
Q Consensus 585 i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii~D~-~s~d~---~~g~scPp~~f~~~~fl 660 (759)
.+|...- . .....+||+|+... ++... ......++..-.+.-|+
T Consensus 243 ~~~~l~~--d------------------------------~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi 290 (524)
T d2ar0a1 243 LGNTLGS--D------------------------------GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFM 290 (524)
T ss_dssp ESCTTSH--H------------------------------HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHH
T ss_pred hhhhhhh--c------------------------------ccccccceeEEecCCccccccccchhhhccccccccHHHH
Confidence 2221110 0 00136799999854 11110 00111233333455699
Q ss_pred HHHHHccCcCcEEEEEe
Q 004354 661 LTVKDALSEQGLFIVNL 677 (759)
Q Consensus 661 ~~~~~~L~~~Gilv~N~ 677 (759)
+.+.+.|++||.+++=+
T Consensus 291 ~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 291 QHIIETLHPGGRAAVVV 307 (524)
T ss_dssp HHHHHHEEEEEEEEEEE
T ss_pred HHHHHhccccCcEEEEE
Confidence 99999999999666533
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=81.68 E-value=1.7 Score=42.07 Aligned_cols=69 Identities=12% Similarity=0.113 Sum_probs=53.2
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cc
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gt 131 (759)
.+..+|-.|++.|. .+..|++.|+. |+.+|.++..++.+.+.+.. ...+.++.+|+++.. +.
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADIADDHGQKVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTTIAKHGK 82 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhcC-CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46788999987764 34566777885 99999999998887777643 345788999998865 78
Q ss_pred ccEEEeC
Q 004354 132 LDALMEP 138 (759)
Q Consensus 132 fD~Ii~~ 138 (759)
.|.++.+
T Consensus 83 iD~lVnn 89 (268)
T d2bgka1 83 LDIMFGN 89 (268)
T ss_dssp CCEEEEC
T ss_pred cceeccc
Confidence 9999964
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=81.65 E-value=1.5 Score=42.38 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=66.8
Q ss_pred CCCCeEEEECCCcchhHHHHHHhCC-----------------------------------------CeEEEEeCCHHHHH
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDAGF-----------------------------------------HGITNVDFSKVVIS 105 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~G~-----------------------------------------~~VtgIDiS~~~I~ 105 (759)
..+..++|.-||+|.+....+-... ..++|.|+++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 3456799999999999876543210 02678899998888
Q ss_pred HHH---HHhccC--CCCcEEEEeecccCC--------CcccEEEeCCC-----------ChhHHHHHHHHHHHhcccCcE
Q 004354 106 DML---RRNVRD--RSDMRWRVMDMTSMQ--------GGLDALMEPEL-----------GHKLGNQYLSEVKRLLKSGGK 161 (759)
Q Consensus 106 ~a~---~r~~~~--~~~i~f~~~D~~~~~--------gtfD~Ii~~~~-----------~~~~~~~~l~ei~rvLkpGG~ 161 (759)
.++ +++... ...+.+.+.|+++.. ...++|+|+.. .......+...+.+++.....
T Consensus 129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~ 208 (249)
T d1o9ga_ 129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 208 (249)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcE
Confidence 774 343332 245889999987654 45789999751 112367888888888865555
Q ss_pred EEEE
Q 004354 162 FVCL 165 (759)
Q Consensus 162 liii 165 (759)
+++.
T Consensus 209 ~~it 212 (249)
T d1o9ga_ 209 IAVT 212 (249)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.82 E-value=3 Score=35.16 Aligned_cols=79 Identities=15% Similarity=0.326 Sum_probs=55.0
Q ss_pred CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEE--EccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCce
Q 004354 554 VGIEAVELDLTMLNLAEDYFGFTQDKSLKVH--ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARV 631 (759)
Q Consensus 554 ~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~--i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 631 (759)
.+|-+||=|+.+.+..++++.- .+.+.++ ..||.+.++... ..+|
T Consensus 2 irILivDD~~~~~~~l~~~L~~--~~~~~~v~~a~~g~~al~~~~-------------------------------~~~~ 48 (123)
T d1dz3a_ 2 IKVCIADDNRELVSLLDEYISS--QPDMEVIGTAYNGQDCLQMLE-------------------------------EKRP 48 (123)
T ss_dssp EEEEEECSCHHHHHHHHHHHHT--STTEEEEEEESSHHHHHHHHH-------------------------------HHCC
T ss_pred cEEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEECCHHHHHHHHH-------------------------------hcCC
Confidence 3788999999999999999853 2334443 468888777655 2569
Q ss_pred eEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCc-EEEEE
Q 004354 632 DILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG-LFIVN 676 (759)
Q Consensus 632 D~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~G-ilv~N 676 (759)
|+|++|+.=++- --.++++.+++.....- ++++-
T Consensus 49 dlillD~~mP~~-----------dG~e~~~~ir~~~~~~~~ii~~t 83 (123)
T d1dz3a_ 49 DILLLDIIMPHL-----------DGLAVLERIRAGFEHQPNVIMLT 83 (123)
T ss_dssp SEEEEESCCSSS-----------CHHHHHHHHHHHCSSCCEEEEEE
T ss_pred CEEEEcCCCCCC-----------CHHHHHHHHHhcCCCCCeEEEEE
Confidence 999999966543 23689999987665432 44433
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=80.81 E-value=1.7 Score=41.83 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=51.8
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCC-HHHHHHHHHHhc-cCCCCcEEEEeecccCC-------------
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFS-KVVISDMLRRNV-RDRSDMRWRVMDMTSMQ------------- 129 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS-~~~I~~a~~r~~-~~~~~i~f~~~D~~~~~------------- 129 (759)
.+..+|--|++.|. .+..|++.|++ |+.+|.+ +..++...+... ....++.++.+|+++..
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 35678888888765 56677888985 9999987 556665555442 23457889999999865
Q ss_pred CcccEEEeCC
Q 004354 130 GGLDALMEPE 139 (759)
Q Consensus 130 gtfD~Ii~~~ 139 (759)
+..|+++.+.
T Consensus 82 G~iDiLVnnA 91 (260)
T d1x1ta1 82 GRIDILVNNA 91 (260)
T ss_dssp SCCSEEEECC
T ss_pred CCCcEEEeec
Confidence 8899999753
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.80 E-value=1.7 Score=41.85 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=51.9
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cc
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gt 131 (759)
.+..+|--|++.|. .+..|++.|+. |+.+|.++..++...+.. ++..++.+|+++.. +.
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDKDESGGRALEQEL----PGAVFILCDVTQEDDVKTLVSETIRRFGR 79 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHC----TTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHhc----CCCeEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 46789999988763 55667778885 999999998887665553 56789999998865 78
Q ss_pred ccEEEeC
Q 004354 132 LDALMEP 138 (759)
Q Consensus 132 fD~Ii~~ 138 (759)
.|.++.+
T Consensus 80 iDilVnn 86 (250)
T d1ydea1 80 LDCVVNN 86 (250)
T ss_dssp CCEEEEC
T ss_pred CCEEEec
Confidence 9999974
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.51 E-value=5 Score=36.24 Aligned_cols=87 Identities=10% Similarity=0.112 Sum_probs=59.4
Q ss_pred CCeEEEEC--CCcchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC----------CcccEE
Q 004354 69 PPQILVPG--CGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------GGLDAL 135 (759)
Q Consensus 69 ~~~ILDlG--CG~G~ls~~L~~~-G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~----------gtfD~I 135 (759)
+..||-.| .|.|..+.++++. |.+.|++++-+++....+.+... .. ...|..+.. ..+|+|
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~g---ad---~vi~~~~~~~~~~~~~~~~~GvDvv 104 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELG---FD---AAVNYKTGNVAEQLREACPGGVDVY 104 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSC---CS---EEEETTSSCHHHHHHHHCTTCEEEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhccc---ce---EEeeccchhHHHHHHHHhccCceEE
Confidence 37899987 4679999999985 77778888888766554433321 11 222333322 459999
Q ss_pred EeCCCChhHHHHHHHHHHHhcccCcEEEEEE
Q 004354 136 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 166 (759)
Q Consensus 136 i~~~~~~~~~~~~l~ei~rvLkpGG~liiit 166 (759)
+-... ...+....++|+++|+++.+-
T Consensus 105 ~D~vG-----g~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 105 FDNVG-----GDISNTVISQMNENSHIILCG 130 (187)
T ss_dssp EESSC-----HHHHHHHHTTEEEEEEEEEC-
T ss_pred EecCC-----chhHHHHhhhccccccEEEec
Confidence 86543 356888999999999998764
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=80.45 E-value=0.4 Score=42.58 Aligned_cols=31 Identities=23% Similarity=0.065 Sum_probs=23.2
Q ss_pred eEEEEcccc--cHHHHHHHHhCCCCcEEEEEcCHH
Q 004354 532 KAVVIGLGA--GLLPMFLHECMPFVGIEAVELDLT 564 (759)
Q Consensus 532 ~vLviGlG~--G~l~~~L~~~~p~~~i~~VEiDp~ 564 (759)
||+|||+|. +.++..|.+. ...|+.++.++.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHH
Confidence 799999994 4666667665 348999988775
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=80.44 E-value=2.9 Score=35.98 Aligned_cols=78 Identities=12% Similarity=0.213 Sum_probs=56.1
Q ss_pred CcEEEEEcCHHHHHHHHhhcCCCCCCCeEEE--EccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCce
Q 004354 554 VGIEAVELDLTMLNLAEDYFGFTQDKSLKVH--ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARV 631 (759)
Q Consensus 554 ~~i~~VEiDp~v~~vA~~~Fgl~~~~rl~v~--i~Da~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 631 (759)
.+|-+||=+|.+.+.-++.+.. .+.+.++ ..||.+.++... ...|
T Consensus 3 i~VLiVDD~~~~r~~l~~~L~~--~~~~~~v~~a~~~~~al~~~~-------------------------------~~~~ 49 (138)
T d1a04a2 3 ATILLIDDHPMLRTGVKQLISM--APDITVVGEASNGEQGIELAE-------------------------------SLDP 49 (138)
T ss_dssp EEEEEECSCHHHHHHHHHHHTT--CTTEEEEEEESSHHHHHHHHH-------------------------------HHCC
T ss_pred CEEEEECCCHHHHHHHHHHHHh--CCCcEEEEEECCHHHHHHHHH-------------------------------hcCC
Confidence 3789999999999999998854 2344444 678988887765 2569
Q ss_pred eEEEEcCCCCCCCCCCCcCCCCCChHHHHHHHHHccCcCc-EEEEE
Q 004354 632 DILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG-LFIVN 676 (759)
Q Consensus 632 D~Ii~D~~s~d~~~g~scPp~~f~~~~fl~~~~~~L~~~G-ilv~N 676 (759)
|+|++|+.-++.. .-++++.+++. .|.. ++++-
T Consensus 50 DlvllD~~mP~~~-----------G~el~~~ir~~-~~~~~vivlt 83 (138)
T d1a04a2 50 DLILLDLNMPGMN-----------GLETLDKLREK-SLSGRIVVFS 83 (138)
T ss_dssp SEEEEETTSTTSC-----------HHHHHHHHHHS-CCCSEEEEEE
T ss_pred CEEEEecCCCCCC-----------HHHHHHHHHhh-CCCCCEEEEE
Confidence 9999999766432 26889999875 3444 44443
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=80.30 E-value=2.3 Score=40.59 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=49.0
Q ss_pred CCCeEEEECCCcch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCC-------------Cc
Q 004354 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------GG 131 (759)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~L~~~G~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~-------------gt 131 (759)
.+..+|--|.+.|. .+..|++.|+. |+.+|.++.- .+.+.......++.++.+|+++.. +.
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~~~~~~--~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 80 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLVPAP--EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGR 80 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCchH--HHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 35678888887663 56777788985 9999987632 222333344567889999998865 88
Q ss_pred ccEEEeCC
Q 004354 132 LDALMEPE 139 (759)
Q Consensus 132 fD~Ii~~~ 139 (759)
.|+++.+.
T Consensus 81 iDilVnnA 88 (247)
T d2ew8a1 81 CDILVNNA 88 (247)
T ss_dssp CCEEEECC
T ss_pred CCEEEECC
Confidence 99998753
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=80.21 E-value=2.4 Score=43.12 Aligned_cols=71 Identities=11% Similarity=0.197 Sum_probs=44.5
Q ss_pred CCCCeEEEECCCcchhHHHHHHh-C-------CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecccCCCcccEEEeC
Q 004354 67 SPPPQILVPGCGNSRLSEHLYDA-G-------FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQGGLDALMEP 138 (759)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L~~~-G-------~~~VtgIDiS~~~I~~a~~r~~~~~~~i~f~~~D~~~~~gtfD~Ii~~ 138 (759)
++...|+|+|+|+|.++..++.. . ...++-++.|+...+..+++.. ....+.|. .|+...+...-+|+++
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~-~~~~i~w~-~~~~~~~~~~g~iiaN 155 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA-GIRNIHWH-DSFEDVPEGPAVILAN 155 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST-TCSSEEEE-SSGGGSCCSSEEEEEE
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc-ccccceec-cChhhcccCCeEEEec
Confidence 45568999999999999877653 1 1148999999987766555543 33445543 3344333222455555
Q ss_pred C
Q 004354 139 E 139 (759)
Q Consensus 139 ~ 139 (759)
+
T Consensus 156 E 156 (365)
T d1zkda1 156 E 156 (365)
T ss_dssp S
T ss_pred c
Confidence 4
|