Citrus Sinensis ID: 004368
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 758 | 2.2.26 [Sep-21-2011] | |||||||
| Q59536 | 690 | Protease 2 OS=Moraxella l | N/A | no | 0.886 | 0.973 | 0.387 | 1e-143 | |
| P24555 | 686 | Protease 2 OS=Escherichia | N/A | no | 0.889 | 0.982 | 0.413 | 1e-140 | |
| P55656 | 705 | Uncharacterized peptidase | no | no | 0.893 | 0.960 | 0.305 | 2e-83 | |
| P55627 | 754 | Uncharacterized peptidase | no | no | 0.874 | 0.879 | 0.309 | 7e-81 | |
| P27028 | 705 | Prolyl endopeptidase OS=F | N/A | no | 0.845 | 0.909 | 0.279 | 4e-66 | |
| Q06903 | 690 | Prolyl endopeptidase OS=A | no | no | 0.848 | 0.931 | 0.284 | 1e-63 | |
| P27195 | 705 | Prolyl endopeptidase OS=E | N/A | no | 0.854 | 0.919 | 0.278 | 8e-61 | |
| Q32N48 | 707 | Prolyl endopeptidase-like | N/A | no | 0.689 | 0.739 | 0.286 | 8e-52 | |
| Q5ZKL5 | 732 | Prolyl endopeptidase-like | yes | no | 0.655 | 0.678 | 0.287 | 1e-51 | |
| Q8C167 | 725 | Prolyl endopeptidase-like | yes | no | 0.653 | 0.682 | 0.292 | 4e-45 |
| >sp|Q59536|PTRB_MORLA Protease 2 OS=Moraxella lacunata GN=ptrB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 272/702 (38%), Positives = 415/702 (59%), Gaps = 30/702 (4%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMF 112
P+AK++ H EL GDVR D+YYWL+D R + EV+ YL++EN Y+ M ++ + ++
Sbjct: 4 PIAKRIPHPHELHGDVREDDYYWLKD--RDNTEVIQYLEEENRYYHEIMRPLQEQTEQIY 61
Query: 113 AELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDA 172
+ R+ ++ P + G ++YY+R + K+Y + R+ + + D E
Sbjct: 62 ESMVDRVPDSEMKVPVQHGQFFYYSRLDKNKQYPIYARK---QAASRALLQDATE----- 113
Query: 173 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK 232
++LD N AE + SV +++ D+ +AY E+ G + YT+Y+ D+ TG +
Sbjct: 114 ---EVVLDLNELAEEDDYLSVTVQRMTTDHSRLAYLENRDGTDRYTIYIKDLNTGELLSD 170
Query: 233 --PLVGVTASVEWAG-NEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLG 289
P V + S+EW + + Y T+DE RP + W H+L +D +D ++ EKDD ++L
Sbjct: 171 RVPNVYIYGSMEWCRCGDYIFYTTVDEHQRPCQLWRHRLGSDVESDELIFEEKDDTFTLF 230
Query: 290 LQASESKKFLFIASESKITRFVFYLDVSKP-EELRVLTPRVVGVDTAASHRGNHFFITRR 348
+ S+S KF+F+ S SK T + +D P L+++ R G+ H + I
Sbjct: 231 ISKSQSGKFIFVYSSSKTTSEIHMIDTDSPLSPLQLVDERRDGILYDVEHWEDDLLILTN 290
Query: 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408
L N +LL CP+++ S ++ + E LQ++ F D L + RE GL +I
Sbjct: 291 EGAL-NFQLLRCPLNDLSSKVNVVEYNEERYLQEMYPFRDKLLIAGRENGLTQIWVVHDG 349
Query: 409 AVGEPLKSLQGGKSVEFIDPVYSIDP-SESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467
+ + + + +P+Y++ SE + + + Y SL TP + + ++ G
Sbjct: 350 EL----------QQISWDEPLYTVAVLSEQSYDTNEVLIQYESLLTPKTTFGLNLQTGEK 399
Query: 468 VLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE 527
++ V G +D + + E+ WA+ G ++P+ VY + + +G PL+LYGYGSY
Sbjct: 400 QCLQVAPVSGEYDRSQFRQEQLWATGRSGVKVPMTAVYLEGALD-NGPAPLILYGYGSYG 458
Query: 528 ICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLI 587
+DP F+ RL LL++G +F AQ+RGG E+GR WYE+GK K+NTFTDFIA A++LI
Sbjct: 459 SNSDPRFDPYRLPLLEKGIVFVTAQVRGGSEMGRGWYEDGKMQNKRNTFTDFIAAAKHLI 518
Query: 588 KNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAE 647
Y + K+ G SAGGLL+GAV NM +LFK V AVPFVDV+TTMLD +IPLTT E
Sbjct: 519 DQNYTSPTKMAARGGSAGGLLVGAVANMAGELFKVIVPAVPFVDVVTTMLDTSIPLTTLE 578
Query: 648 WEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMK 707
W+EWGDP K+E YFYMKSYSP DNV+A++YPH+ +T G+NDPRV Y EPAK+VA+LR +K
Sbjct: 579 WDEWGDPRKQEDYFYMKSYSPYDNVEAKDYPHMYITTGINDPRVGYFEPAKWVARLRAVK 638
Query: 708 TDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749
TD+N L+ K +GAGHF KSGRF L+EAA +Y F++ L +
Sbjct: 639 TDNNTLVMKTNMGAGHFGKSGRFNHLKEAAESYAFILDKLGV 680
|
Cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Moraxella lacunata (taxid: 477) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 8EC: 3 |
| >sp|P24555|PTRB_ECOLI Protease 2 OS=Escherichia coli (strain K12) GN=ptrB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 295/714 (41%), Positives = 407/714 (57%), Gaps = 40/714 (5%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMF 112
P A ++ H M L GD R+DNYYWLRDD+RS PEVL YL+QEN Y M+ + ++D +
Sbjct: 3 PKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLQQENSYGHRVMASQQALQDRIL 62
Query: 113 AELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDA 172
E+ RI Q +VSAP+ + Y Y G EY + R+ + E D ET
Sbjct: 63 KEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQSAFSEEW-----DEWET---- 113
Query: 173 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK 232
+LD N +A FYS+G ++PDN ++A AED Y + ++ETG +
Sbjct: 114 -----LLDANKRAAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE 168
Query: 233 PLVGVTASVEWAGNEALVYITMDE--ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 290
L V S WA + + Y L P + W H + S D +Y EKDD Y + L
Sbjct: 169 LLDNVEPSFVWANDSWIFYYVRKHPVTLLPYQVWRHAIGTPASQDKLIYEEKDDTYYVSL 228
Query: 291 QASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITRRS 349
+ SK ++ I S T V LD + E V PR + + H + F++ R +
Sbjct: 229 HKTTSKHYVVIHLASATTSEVRLLDAEMADAEPFVFLPRRKDHEYSLDHYQHRFYL-RSN 287
Query: 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409
N L + + + LIP RE++ L+ LF D L V ER+ GL L
Sbjct: 288 RHGKNFGLYRTRMRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTS-----LRQ 342
Query: 410 VGEPLKSLQGGKSVEFIDPVY----SIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMG 465
+ + + G + F DP Y + +P ++R LR+ YSS+ TP ++++ DMD G
Sbjct: 343 INRKTREVIG---IAFDDPAYVTWIAYNPEPE--TAR-LRYGYSSMTTPDTLFELDMDTG 396
Query: 466 -ISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVY-RKNLVKLDGSDPLLLYGY 523
VLK+ E + GF NY +E W A DG ++P+ +VY RK+ K G +PLL+YGY
Sbjct: 397 ERRVLKQTE--VPGFYAANYRSEHLWIVARDGVEVPVSLVYHRKHFRK--GHNPLLVYGY 452
Query: 524 GSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACA 583
GSY D F+ SRLSLLDRGF++AI +RGGGELG+QWYE+GKFLKKKNTF D++
Sbjct: 453 GSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDAC 512
Query: 584 EYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPL 643
+ L+K Y + G SAGG+L+G +N RP+LF +A VPFVDV+TTMLD +IPL
Sbjct: 513 DALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPL 572
Query: 644 TTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKL 703
TT E+EEWG+P ++Y YMKSYSP DNV AQ YPH+LVT GL+D +V Y EPAK+VAKL
Sbjct: 573 TTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKL 632
Query: 704 REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR-ALSMLPSVGSE 756
RE+KTDD++LL ++ +GH KSGRF+ A Y FL+ A LP+ ++
Sbjct: 633 RELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLVALAQGTLPATPAD 686
|
Cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Escherichia coli (strain K12) (taxid: 83333) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 8 EC: 3 |
| >sp|P55656|Y4SO_RHISN Uncharacterized peptidase y4sO OS=Rhizobium sp. (strain NGR234) GN=NGR_a01580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 311 bits (796), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 222/726 (30%), Positives = 361/726 (49%), Gaps = 49/726 (6%)
Query: 46 QSKLPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTK 105
++K PP+ + L DV +D+Y WLRD R DP+VLAYL+ EN Y + S
Sbjct: 2 ENKSLQPPLPRSERRIRVLHNDVTIDSYGWLRD--REDPDVLAYLEAENHYADEVTSYVA 59
Query: 106 KIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDT 165
+++ ++ AE++ R + PF+ G ++Y+ ++ G + RR +
Sbjct: 60 ELKADLIAEIEKRDSCDGAPPPFQVGFFFYFQKSQSGLLHSAWWRRPVTGG--------- 110
Query: 166 METGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE 225
PE L+ D N FYS+G + S D + +A++ D G+E Y + V D+
Sbjct: 111 --------PEELVFDPNTLPGAEVFYSLGALEPSDDGRYIAFSFDLIGNERYELRVRDMT 162
Query: 226 TGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDI 285
G + + + WA + ++ T + R + +L+ + ++ E ++
Sbjct: 163 NGREIWRD-PSRAGRLVWAADNRTLFFTRERADRRQHDRVVRLDVETGRSEVVFEEVNER 221
Query: 286 YSLGLQASESKKFLFIA------SESKITRF---VFYLDVSKPEEL-RVLTPRVVGVDTA 335
+L ++ S S +LFI S+I R V+ L +P ++ R + R +G +
Sbjct: 222 LALVVRRSGSGAYLFIDVIITSDMSSRIQRAAAEVWCLPAERPTDMWRRILARELGHEIY 281
Query: 336 ASHRGNHFFITRRSDELFNSELLACPVDNTSET--TVLIPHRESVKLQDIQLFIDHLAVY 393
A H GN F R +D N L+ +D+TS + ++PHR + L++I + +H+ V
Sbjct: 282 AEHWGNEFLF-RVNDTGPNLRLVRTAIDDTSPSRWQEVVPHRAGITLEEIHVLEEHVIVL 340
Query: 394 EREGGLQKITTY-RLPAVGEPLKSLQGGKSVEF-IDPVYSIDPSESVFSSRILRFHYSSL 451
EREG ++ + R VG + ++ +V + S + + L + S
Sbjct: 341 EREGIQPRLVAHHRNGRVGPSIVPVEHSCTVTVGLSAGGSYSCARHPYRVSALTYKICSF 400
Query: 452 RTPPSVYDYDMDMGIS-VLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLV 510
TP +D+ S VL + T++ GF+ Y A A DG ++PI IV R++
Sbjct: 401 VTPDIFIQHDLLTDKSKVLYR--TLVSGFEPELYEARVVMAKAEDGVEVPISIVARRDRG 458
Query: 511 KLDGSDPLLLYGYGSYEICNDPAF------NSSRLSLLDRGFIFAIAQIRGGGELGRQWY 564
+ DG P+LL YG Y + PAF ++RLSLLDRG F I +RGGGELGR W+
Sbjct: 459 E-DG--PVLLNVYGCYGAQSLPAFFGWPSSMTARLSLLDRGVAFGIVHVRGGGELGRAWH 515
Query: 565 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAV 624
E +K+ T TD IA AE L+++ + +++ + IEGRSAGG + A +RPDLF+A +
Sbjct: 516 EAATRDQKRLTHTDLIAAAECLVEHRFASRDGIVIEGRSAGGGTVLAAAVLRPDLFRAVL 575
Query: 625 AAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKA-QNYPHILVT 683
A VP D++ T LD T+P E E+GDP Y Y++SY P N+ + YP +
Sbjct: 576 AEVPLADIIDTELDFTLPYALRETAEYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYID 635
Query: 684 AGLNDPRVMYSEPAKFVAKLREMKTD-DNILLFKCELGAGHFSKSGRFERLREAAFTYTF 742
A L+D +V+Y +PA++VA+ R D D L+F+ + GH S EAAF +
Sbjct: 636 AALHDSQVLYYQPARYVAQRRSKAVDRDPDLIFRTRMIGGHMGVSHGPGVAEEAAFRMAW 695
Query: 743 LMRALS 748
++ L
Sbjct: 696 ILHRLG 701
|
Rhizobium sp. (strain NGR234) (taxid: 394) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P55627|Y4QF_RHISN Uncharacterized peptidase y4qF OS=Rhizobium sp. (strain NGR234) GN=NGR_a01920 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 302 bits (773), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 225/726 (30%), Positives = 352/726 (48%), Gaps = 63/726 (8%)
Query: 52 PPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNM 111
PP+ + L DV VD Y WLRD R +P+V AYL+ EN Y E A + ++++ +
Sbjct: 39 PPLPRAEPRIRVLHDDVTVDRYGWLRD--RENPDVRAYLEAENSYAEQATAHLRRLKTEL 96
Query: 112 FAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPD 171
AE++GR E + PF+ G + Y+ G + RR + A
Sbjct: 97 IAEIEGRQPCEGATPPFQVGPFDYFQGHERGLPHPVWWRRPVTGGSA------------- 143
Query: 172 APPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG 231
L+LD N FY +G F+ S D + +A++ D G E Y + V D+ G V
Sbjct: 144 ----ELVLDPNAIPGADVFYWLGVFEPSDDGRYLAFSVDLIGAERYELRVRDMSDGRDVW 199
Query: 232 KPLVGVTASVEWAGNEALVYITMDEILRPDKAWLH---KLEADQSNDICLYHEKDDIYSL 288
+ G V WA + ++ T + RPD+ H +L + N ++ E ++ ++
Sbjct: 200 RD-AGSVGQVVWAADNHTLFFTRE---RPDRRQHHQIVRLNVGRGNSEVVFEEANERLAV 255
Query: 289 GLQASESKKFLF--IASESKITRFV-------FYLDVSKPE-ELRVLTPRVVGVDTAASH 338
++ S+S +LF + + S ++ +V + L +P + R + R +G A H
Sbjct: 256 LVRRSQSGAWLFLDVLTTSDMSSYVQRGAAEVWCLPADEPGGQWRRIVMRELGHQIYAEH 315
Query: 339 RGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFIDHLAVYERE 396
+ F R D L++ P+D+ S + ++PHR V + +I + HL + ERE
Sbjct: 316 WYDRFLF-RVDDAGPYWRLVSAPIDDPSPSRWEEVVPHRAGVTIDEIHVLEQHLVLLERE 374
Query: 397 GGLQK-ITTYRLPAVG------EPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYS 449
G + I+ R VG EP +++ G S YS + F S L + S
Sbjct: 375 GLRPRLISRNRSGRVGAVIVPDEPSCTIRVGLSA---GGCYSA--ARHPFRSSKLTYSVS 429
Query: 450 SLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNL 509
S TP + ++D SV+ E + G+D Y A A DG Q+PI +V R++
Sbjct: 430 SFVTPDTFIEHDFANDRSVVL-CEARVPGYDATQYLATVVMAEAEDGVQVPISLVARRDR 488
Query: 510 VKLDGSDPLLLYGYGSYEICNDPAF------NSSRLSLLDRGFIFAIAQIRGGGELGRQW 563
P+LL YG Y I P+F ++RLSLLDR F I +RGGGELGR W
Sbjct: 489 TS---PGPVLLSVYGCYGIPRLPSFLAWPSSMTARLSLLDREVAFGIVHVRGGGELGRPW 545
Query: 564 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAA 623
++ +K+ T TD I+ E LI+ + T++ + IEG+S GG + A RP+LF+A
Sbjct: 546 HDAATRDQKRITHTDLISATEGLIERGFATRDGVVIEGKSGGGGTVLATAVFRPNLFRAV 605
Query: 624 VAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILV 682
VA VP D++ T LD T+P T E E+GDP Y Y++SY P N+ + + P V
Sbjct: 606 VAEVPLADIIDTQLDSTMPYTLKETAEYGDPQDAYEYRYLRSYDPYYNLSPERSLPPTYV 665
Query: 683 TAGLNDPRVMYSEPAKFVAKLREMKTD-DNILLFKCELGAGHFSKSGRFERLREAAFTYT 741
A L+D +V+Y +PA++VA+ R TD D L+F+ + GH S +AAF
Sbjct: 666 DAALDDGQVIYYQPARYVAQRRSCATDRDPDLVFRIRMVGGHSGPSHGPGIAEQAAFRMA 725
Query: 742 FLMRAL 747
+++ L
Sbjct: 726 WVLDQL 731
|
Rhizobium sp. (strain NGR234) (taxid: 394) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P27028|PPCE_FLAME Prolyl endopeptidase OS=Flavobacterium meningosepticum GN=f1pep1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 204/729 (27%), Positives = 346/729 (47%), Gaps = 88/729 (12%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMF 112
P KKV H FG D Y WL DD D + A+++QE + + ++ D +
Sbjct: 29 PETKKVSHTDTYFGTQVSDPYRWLEDDRAEDTK--AWVQQEVKFTQDYLAQIP-FRDQLK 85
Query: 113 AELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDA 172
+L E +SAPF++G Y Y+++ +G + + +++ +A A
Sbjct: 86 KQLMDIWNYEKISAPFKKGKYTYFSKN-DGLQ----AQSVLYRKDA-------------A 127
Query: 173 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK 232
+ LD N +E +G S+ + LVAY+ G + + ++D ET + +
Sbjct: 128 GKTEVFLDPNKFSE-KGTTSLASVSFNKKGTLVAYSISEGGSDWNKIIILDAETKKQLDE 186
Query: 233 PLVGVTAS-VEWAGNEALVYITMDE---------ILRPDKAWLHKLEADQSND-ICLYHE 281
L+ V S + W G+E Y + D+ + K + HKL QS D + + +
Sbjct: 187 TLLDVKFSGISWLGDEGFFYSSYDKPKEGSVLSGMTDKHKVYFHKLGTKQSQDELIIGGD 246
Query: 282 KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT---PRVVGVDT---A 335
K +G ++ +++L +++ + Y+ ++L+ T P + G D+
Sbjct: 247 KFPRRYIGAYVTDDQRYLVVSAANATNGNELYI-----KDLKNKTDFIPIITGFDSNVNV 301
Query: 336 ASHRGNHFFITRRSDELFNSELLACPVDNTSETT---VLIPHRESVKLQD---------I 383
A G+ ++ D N L+ + N T V+ E +++ +
Sbjct: 302 ADTDGDTLYLFTDKDAP-NKRLVKTTIQNPKAETWKDVIAETSEPLEINTGGGYFFATYM 360
Query: 384 QLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRI 443
+ ID + Y++ G L + +LP G S GG+ E +
Sbjct: 361 KDAIDQVKQYDKNGKL--VRAIKLPGSGNA--SGFGGEKTE-----------------KD 399
Query: 444 LRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICI 503
L + +++ TPP+++ Y++ G S + + V F+ NY +E+ + ++SDGT+IP+ I
Sbjct: 400 LYYSFTNYITPPTIFKYNVTTGNSEVYQKPKVK--FNPENYVSEQVFYTSSDGTKIPMMI 457
Query: 504 VYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 563
Y+K L K DG +P +LY YG + I PAF+ ++ G I+A+ IRGGGE G++W
Sbjct: 458 SYKKGLKK-DGKNPTILYSYGGFNISLQPAFSVVNAIWMENGGIYAVPNIRGGGEYGKKW 516
Query: 564 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAA 623
++ G ++KKN F DFIA EYL KN Y +KE + + GRS GGLL+GA + MRPDL K A
Sbjct: 517 HDAGTKMQKKNVFNDFIAAGEYLQKNGYTSKEYMALSGRSNGGLLVGATMTMRPDLAKVA 576
Query: 624 VAAVPFVDVLTTMLDPTIPLTTAEWE-EWGDPW-KEEFYFYMKSYSPVDNVKAQN-YPHI 680
V +D ML A W ++G +E + Y+KSYSPV NVKA YP
Sbjct: 577 FPGVGVLD----MLRYNKFTAGAGWAYDYGTAEDSKEMFEYLKSYSPVHNVKAGTCYPST 632
Query: 681 LVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTY 740
+V +D RV+ + KF ++L+ ++ N +L + E AGH + + + E A
Sbjct: 633 MVITSDHDDRVVPAHSFKFGSELQAKQSCKNPILIRIETNAGHGAGRSTEQVVAENADLL 692
Query: 741 TFLMRALSM 749
+F + + +
Sbjct: 693 SFALYEMGI 701
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Flavobacterium meningosepticum (taxid: 238) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q06903|PPCE_AERHY Prolyl endopeptidase OS=Aeromonas hydrophila PE=1 SV=2 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 204/718 (28%), Positives = 324/718 (45%), Gaps = 75/718 (10%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMF 112
PV ++ E FG D Y WL DD RS PE A++K +N + ++ D +
Sbjct: 10 PVTRQSEQLDHYFGQAVADPYRWLEDD-RS-PETEAWVKAQNRVTQDYLAQIP-FRDAIK 66
Query: 113 AELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDA 172
+L APFR+G Y+Y+ + + C +L
Sbjct: 67 GKLATSWNYAKEGAPFREGRYHYFFKNDGLQNQNVLCGQLA------------------G 108
Query: 173 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK 232
P + LD N+ + G ++ S D K +AY+ G + ++++D+E+ P+
Sbjct: 109 KPAEVFLDPNLLSP-DGTTALDQLSFSRDGKTLAYSLSLAGSDWREIHLMDVESKQPLET 167
Query: 233 PLVGVTAS-VEWAGNEALVYITMDEILRPD-----------KAWLHKLEADQSNDICLYH 280
PL V S + W GNE Y + D +PD K + H+L Q D ++
Sbjct: 168 PLRDVKFSGISWLGNEGFFYSSYD---KPDGSELSARTDQHKLYFHRLGTAQEEDRLVFG 224
Query: 281 E--KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAAS- 337
+G +E ++L I++ + Y+ E +LT V D AA
Sbjct: 225 AIPAQRHRYVGATVTEDDRYLLISAADSTSGNRLYVKDLTREGAPLLT---VQGDLAADV 281
Query: 338 ----HRGNHFFITRRSDELFNSELLACPVDNTS--ETTVLIPHRESVKLQDIQLFIDHLA 391
++G+ ++ D N L+ DN + LIP R+ V L
Sbjct: 282 SLVDNKGSRLYLLTNRDAP-NRRLVTVEADNPGPEQWRDLIPERQQV-----------LT 329
Query: 392 VYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID--PVYSIDPSESVFSSRILRFHYS 449
V+ GG Y + A + GK V + + S+ L F +
Sbjct: 330 VHS--GGGYLFAEYMVDATARVEQFDHDGKRVREVGLPGLGSVSGFNGKQDDPALYFGFE 387
Query: 450 SLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNL 509
+ PP++Y ++ + G L + F +Y +E+++ + DGT++P+ I YRK L
Sbjct: 388 NYAQPPTLYKFEPNSGAISLYRASAAP--FKPEDYVSEQRFYRSKDGTRVPLIISYRKGL 445
Query: 510 VKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 569
KLDGS+P +LYGYG +++ P+F+ S + LD G ++A+A +RGGGE G+ W+ G
Sbjct: 446 -KLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTR 504
Query: 570 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629
+ K+N F DFIA AEYL Y ++L I G S GGLL+GAV+ RPDL + A AV
Sbjct: 505 MNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVACQAVGV 564
Query: 630 VDVLTTMLDPTIPLTTAEWE-EWGDPWKEEFYF-YMKSYSPVDNVKAQ-NYPHILVTAGL 686
+D ML A W ++G E F Y+K YSP+ +V+A +YP LVT
Sbjct: 565 LD----MLRYHTFTAGAGWAYDYGTSADSEAMFDYLKGYSPLHSVRAGVSYPSTLVTTAD 620
Query: 687 NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744
+D RV+ + KF A L+ + L + E AGH + + + + ++A Y F +
Sbjct: 621 HDDRVVPAHSFKFAATLQADDAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTL 678
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Aeromonas hydrophila (taxid: 644) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P27195|PPCF_ELIMR Prolyl endopeptidase OS=Elizabethkingia miricola PE=1 SV=1 | Back alignment and function description |
|---|
Score = 235 bits (600), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 201/722 (27%), Positives = 336/722 (46%), Gaps = 74/722 (10%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMF 112
P KKV H FG+ D Y WL DD D + A+++QE + + ++
Sbjct: 29 PETKKVNHTDTYFGNQVSDPYRWLEDDRAEDTK--AWVQQEVKFTQDYLAQI-------- 78
Query: 113 AELKGRIKQ--------EDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHD 164
+G+IK+ E +SAPF++G Y Y+ + +G + + +++ +A
Sbjct: 79 -PFRGQIKKQLLDIWNYEKISAPFKKGKYTYFYKN-DGLQ----AQSVLYRKDA------ 126
Query: 165 TMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDI 224
+ + LD N K +G S+ + LVAY+ G + + ++D
Sbjct: 127 -------SGKTEVFLDPN-KFSDKGTTSLANLSFNKKGTLVAYSISEGGSDWNKIIILDA 178
Query: 225 ETGTPVGKPLVGVTAS-VEWAGNEALVYITMDE---------ILRPDKAWLHKLEADQSN 274
ET + + L+ V S + W G+E Y + D+ + K + HKL QS
Sbjct: 179 ETKKQIDETLLDVKFSGISWLGDEGFFYSSYDKPKDGSVLSGMTDKHKVYFHKLGTKQSQ 238
Query: 275 D-ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYL-DVSKPEELRVLTPRVVGV 332
D + + +K L +E +++L +++ + Y+ D+ + P + G
Sbjct: 239 DELIIGGDKFPRRYLSGYVTEDQRYLVVSAANATNGNELYIKDLKNKTDF---IPIITGF 295
Query: 333 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAV 392
++ N + D LF P +TT+ P E+ K I + + V
Sbjct: 296 ES------NVGLVDTDGDTLFLHTDKNAPNMRMVKTTIQNPKPETWK-DVIAETSEPMRV 348
Query: 393 YEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID--PVYSIDPSESVFSSRILRFHYSS 450
GG TY A+ + + + GK V I + + + L + +++
Sbjct: 349 --NSGGGYFFATYMKDALSQIKQYDKTGKLVREIKLPGSGTAGGFGGEKTEKELYYSFTN 406
Query: 451 LRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLV 510
TPP+++ + +D G S + + V F+ NY +E+ + +++DGT+IP+ I +K L
Sbjct: 407 YITPPTIFKFSIDSGKSEVYQKPKV--KFNPENYVSEQVFYTSADGTKIPMMISNKKGLK 464
Query: 511 KLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 570
K DG +P +LY YG + I PAF+ ++ G I+A+ IRGGGE G++W++ G
Sbjct: 465 K-DGKNPTILYSYGGFNISLQPAFSVVNAIWMENGGIYAVPNIRGGGEYGKKWHDAGTKQ 523
Query: 571 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630
+KKN F DFIA EYL KN Y +K+ + + GRS GGLL+GA + MRPDL K A V +
Sbjct: 524 QKKNVFNDFIAAGEYLQKNGYTSKDYMALSGRSNGGLLVGATMTMRPDLAKVAFPGVGVL 583
Query: 631 DVLTTMLDPTIPLTTAEWE-EWGDPW-KEEFYFYMKSYSPVDNVKAQN-YPHILVTAGLN 687
D ML A W ++G +E + Y+KSYSPV NVKA YP +V +
Sbjct: 584 D----MLRYNKFTAGAGWAYDYGTAEDSKEMFEYLKSYSPVHNVKAGTCYPSTMVITSDH 639
Query: 688 DPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 747
D RV+ + KF A+L+ + N +L + E AGH + + + E A +F + +
Sbjct: 640 DDRVVPAHSFKFGAELQAKQACKNPVLIRIETNAGHGAGRSTEQVVMENADLLSFALYEM 699
Query: 748 SM 749
+
Sbjct: 700 GI 701
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Elizabethkingia miricola (taxid: 172045) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q32N48|PPCEL_XENLA Prolyl endopeptidase-like OS=Xenopus laevis GN=prepl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (522), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 157/548 (28%), Positives = 258/548 (47%), Gaps = 25/548 (4%)
Query: 168 TGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG 227
TG D+ E L++ E++ G G Y + +VSP K +A E T V+ ++ G
Sbjct: 117 TGEDSL-EVLLISEDL---GLGDYEIQKIRVSPKQKFMAVTLKGYEREESTCVVVKLDNG 172
Query: 228 TPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYS 287
V + V S EWA + L++ + + + + + +Y E D +
Sbjct: 173 PQVTHCIENVF-SCEWATDRMLLHTSQVNV-QCRQVFATDFSDANGAAQLVYTENDPRFF 230
Query: 288 LGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-PRVVGVDTAASHRGNHFFIT 346
+ L + K+F+ I S SK T V +D P E VL R+ GV H ++
Sbjct: 231 VDLYCTRDKRFITINSNSKSTSEVRLIDNRCPFEPPVLVQKRIAGVIYYIEHSNGCLYML 290
Query: 347 RRSDELFNSELLACPVDN-TSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTY 405
RR E ++L V + + +E KL D+++ DH ++ L+
Sbjct: 291 RRHGEAAEYKILKAAVSSGMKHWEPVYEVQERTKLVDMEMLKDHCLLF-----LKNHNQL 345
Query: 406 RLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMG 465
L +G P ++ + +D ++ + + + F SS PP ++Y
Sbjct: 346 SLEVIGLPSGAVLQSIKLPAWACALELD-HQAEYGAGTVGFSLSSPVHPPVHFEY----- 399
Query: 466 ISVLKK---IETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYG 522
S+ KK ++T + + T R A + DGT +P+ ++Y+ + ++ PLL++
Sbjct: 400 -SLRKKQLSVDTNHSSDGIHQFHTLRLEAKSKDGTSVPLTLLYKDSEKQMR-QRPLLIHV 457
Query: 523 YGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC 582
YG+Y + + +F + L++ G++ A +RGGGELG W+ G KK N D +C
Sbjct: 458 YGAYGMDLNMSFKVEKRMLVEEGWLLAYCHVRGGGELGCNWHSEGVLDKKLNGLEDLGSC 517
Query: 583 AEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 642
+L Y +E SAGG+L GA+ N P LF+A V PF+DVL TM++ ++P
Sbjct: 518 ISHLHGLGYSQPHYSAVEAASAGGVLAGALCNSAPRLFRAVVLEAPFLDVLNTMMNVSLP 577
Query: 643 LTTAEWEEWGDPWKEEFYF-YMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVA 701
LT E EEWG+P +E Y Y+KSY P N+ QNYP + +TA ND RV ++
Sbjct: 578 LTIEEQEEWGNPLSDEKYHRYIKSYCPYQNITPQNYPCVRITAYENDQRVPIQGLLGYIT 637
Query: 702 KLREMKTD 709
+LR+ D
Sbjct: 638 RLRKAARD 645
|
Probable serine peptidase whose precise substrate specificity remains unclear. Xenopus laevis (taxid: 8355) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q5ZKL5|PPCEL_CHICK Prolyl endopeptidase-like OS=Gallus gallus GN=PREPL PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 150/521 (28%), Positives = 249/521 (47%), Gaps = 24/521 (4%)
Query: 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMD 255
++SPD + +A + ++ E T ++ + P + ++ S EWA N+ L Y T
Sbjct: 179 IRISPDERYLATSLQSENSEEATCVIMKL-GDVPFVEEVIPNVFSFEWATNDVLYY-TSQ 236
Query: 256 EILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLD 315
+ L+ ++ ++ + +Y E+D + + + ++ ++FL I S SK T V+ +D
Sbjct: 237 KNLKCQNVFMTTFTNEKYTKL-VYTEQDARFFVDIYCTKDRRFLTINSNSKTTSEVWLID 295
Query: 316 VSKPEELRVLT-PRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTS--ETTVLI 372
P +L VL R GV HR N +I E +L+ V +T ++
Sbjct: 296 CRHPFKLPVLVQARTKGVIYHVEHRNNELYILTSYGEPAEYKLMKASVASTGMENWQLVY 355
Query: 373 PHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSI 432
E KL D+++F DH ++ ++ G + + V ++S+Q P ++
Sbjct: 356 ALEEKTKLIDLEMFRDHCIMFLQKAGYLYLNV--IAFVSHSVQSIQL--------PTWAC 405
Query: 433 D---PSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERK 489
S +S F +S PP + Y + + E V N T R
Sbjct: 406 AFELESHPEHASSTCYFQLTSPVHPPRRFAYSFKENNLIEQAAEEVP---IIMNCHTTRL 462
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
A + D T +PI + + N +L PLL++ YG+Y I + +F +L L++ G+I A
Sbjct: 463 LAKSKDETLVPITVFHNVNSKELH-RKPLLVHVYGAYGIDLNMSFKEEKLMLIEEGWILA 521
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609
+RGGGELG +W+++G K D AC L + + + + SAGG+L
Sbjct: 522 YCHVRGGGELGLRWHKDGCQQNKLKGLHDLKACIMLLHELGFSQPKYTALTAVSAGGVLA 581
Query: 610 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYF-YMKSYSP 668
GA+ N P+L +A V PFVDVL TM+ +PL+ E EEWG+P +E Y+K+Y P
Sbjct: 582 GAICNSDPELIRAVVLQAPFVDVLNTMMKTHLPLSIEEQEEWGNPLADEKCMKYIKNYCP 641
Query: 669 VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 709
N+K Q YP + +TA ND RV + ++V KLR+ D
Sbjct: 642 YHNIKPQCYPSVFITAYENDQRVPLTGILRYVQKLRKATLD 682
|
Probable serine peptidase whose precise substrate specificity remains unclear. Gallus gallus (taxid: 9031) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q8C167|PPCEL_MOUSE Prolyl endopeptidase-like OS=Mus musculus GN=Prepl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (465), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 153/523 (29%), Positives = 243/523 (46%), Gaps = 28/523 (5%)
Query: 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEA---L 249
+ C +V+PD K VA T+ E T+ V+ + + PV + +S EW +E +
Sbjct: 156 IDCIRVAPDEKYVAAKIRTEDSETSTLVVVKL-SDQPVMEASFPNVSSFEWVKDEEDEDV 214
Query: 250 VYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITR 309
++ T LR + ++ N+ Y EKD Y + L ++ +FL + +K T
Sbjct: 215 LFYTFQRNLRCHDVYRATFGDNKRNER-FYTEKDPSYFVFLYLTKDSRFLTLNIMNKTTS 273
Query: 310 FVFYLDVSKPEELRVL-TPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSET 368
V+ +D P + VL R+ G+ HR + +I E +L+ D +
Sbjct: 274 EVWLIDGLSPWDPPVLIQKRIHGMLYYVEHRDDELYILTNVGEPTEFKLMRTAADAPAIM 333
Query: 369 T--VLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGK-SVEF 425
+ + + K+ D+ +F DH ++ + L + L + ++SL+ + F
Sbjct: 334 NWDLFFTMKRNTKVVDLDMFKDHCVLFLKHSNLLYVNVIGL--ADDSVRSLKLPPWACGF 391
Query: 426 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFD--TNN 483
I S DP F S PP Y Y G K+ G D T
Sbjct: 392 IMDTNS-DPKNCPF-------QLCSPIRPPKYYTYKFAEG-----KLFEETGHEDPITKT 438
Query: 484 YFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD 543
R A + DG +P+ + ++ + L PLL++ YG+Y + F + L+D
Sbjct: 439 SRVLRIEAKSKDGKLVPMTVFHKTDSEDLQ-RKPLLVHVYGAYGMDLKMNFRPEKRVLVD 497
Query: 544 RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRS 603
G+I A +RGGGELG QW+ +G+ KK N D +AC + L + + S
Sbjct: 498 DGWILAYCHVRGGGELGLQWHADGRLTKKLNGLADLVACIKTLHSQGFSQPSLTTLSAFS 557
Query: 604 AGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFY-FY 662
AGG+L+GA+ N +P+L +A PF+DVL TMLD T+PLT E EEWG+P +E + Y
Sbjct: 558 AGGVLVGALCNSKPELLRAVTLEAPFLDVLNTMLDTTLPLTLEELEEWGNPSSDEKHKNY 617
Query: 663 MKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLRE 705
+K Y P N+K Q+YP + +TA ND RV + KL+E
Sbjct: 618 IKRYCPCQNIKPQHYPSVHITAYENDERVPLKGIVNYTEKLKE 660
|
Probable serine peptidase whose precise substrate specificity remains unclear. Does not cleave peptides after a arginine or lysine residue. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 758 | ||||||
| 359484112 | 719 | PREDICTED: protease 2-like isoform 2 [Vi | 0.945 | 0.997 | 0.760 | 0.0 | |
| 449458732 | 757 | PREDICTED: protease 2-like [Cucumis sati | 0.965 | 0.966 | 0.736 | 0.0 | |
| 224095196 | 711 | predicted protein [Populus trichocarpa] | 0.932 | 0.994 | 0.763 | 0.0 | |
| 297742723 | 755 | unnamed protein product [Vitis vinifera] | 0.916 | 0.920 | 0.774 | 0.0 | |
| 297742722 | 698 | unnamed protein product [Vitis vinifera] | 0.919 | 0.998 | 0.766 | 0.0 | |
| 297847380 | 710 | prolyl oligopeptidase family protein [Ar | 0.935 | 0.998 | 0.747 | 0.0 | |
| 356575387 | 766 | PREDICTED: protease 2-like [Glycine max] | 0.918 | 0.908 | 0.780 | 0.0 | |
| 18403046 | 710 | oligopeptidase B [Arabidopsis thaliana] | 0.935 | 0.998 | 0.741 | 0.0 | |
| 359484110 | 717 | PREDICTED: protease 2-like isoform 1 [Vi | 0.906 | 0.958 | 0.769 | 0.0 | |
| 225463781 | 694 | PREDICTED: protease 2-like [Vitis vinife | 0.883 | 0.965 | 0.783 | 0.0 |
| >gi|359484112|ref|XP_003633066.1| PREDICTED: protease 2-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1169 bits (3025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/719 (76%), Positives = 633/719 (88%), Gaps = 2/719 (0%)
Query: 41 ATMMSQSKLPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESA 100
AT +Q LP PPVA KV+H+ME+FGDVR+DNYYWLRDDSRSDP+VL+YL+ EN Y +
Sbjct: 2 ATAKAQP-LPPPPVANKVKHEMEMFGDVRIDNYYWLRDDSRSDPQVLSYLRDENAYTDLL 60
Query: 101 MSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPP 160
MSGTK +E+ ++AE++GRIK++D+S P R+G YYYY RTLEGKEYVQ+CRRL+ N E PP
Sbjct: 61 MSGTKHLENQIYAEIRGRIKEDDISVPLRKGPYYYYQRTLEGKEYVQYCRRLVPNVEVPP 120
Query: 161 SVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVY 220
SV++TM TGP APPEH+ILDEN+KA+ +YS+G F++SP++KLVAYAEDTKGDEIYTVY
Sbjct: 121 SVYETMPTGPSAPPEHVILDENIKAQEHAYYSIGAFKISPNSKLVAYAEDTKGDEIYTVY 180
Query: 221 VIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYH 280
VID ET PVGKP+VGVT +EW G+EAL+YITMDE LRPDK WLHKLE DQS+D CLYH
Sbjct: 181 VIDAETRAPVGKPIVGVTPYLEWVGDEALLYITMDETLRPDKVWLHKLETDQSSDSCLYH 240
Query: 281 EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHR 339
EKD+++S+ L+ASESKKF+F+ SESK TRF+F LDVSKPE L VLTPR+ G+DT+ASHR
Sbjct: 241 EKDNMFSVDLEASESKKFVFVGSESKTTRFIFNLDVSKPEGGLMVLTPRLDGIDTSASHR 300
Query: 340 GNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGL 399
GNHFFI RRSDE FNSE+LACP++N SETTVL+PHRESVK+QDIQLF HL VYERE GL
Sbjct: 301 GNHFFIKRRSDEFFNSEVLACPLNNISETTVLLPHRESVKIQDIQLFSGHLVVYERENGL 360
Query: 400 QKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYD 459
K+T YRLPAVGEPL SLQGG++V+F+DP+YS+DPSES FSS ILRF YSSLRTP SVYD
Sbjct: 361 PKVTFYRLPAVGEPLGSLQGGRTVDFLDPIYSVDPSESQFSSSILRFSYSSLRTPDSVYD 420
Query: 460 YDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLL 519
YDM+ G+SVLKKI+TVLG FD + Y TERKWA+A DGTQIPI IVYRK+LVKLDGSDPLL
Sbjct: 421 YDMNTGVSVLKKIQTVLGNFDASKYITERKWANAQDGTQIPISIVYRKDLVKLDGSDPLL 480
Query: 520 LYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF 579
LYGYGSYEIC + F SRLSLLDRGFIFAIA IRGGGE+GRQWYENGK LKKKNTFTDF
Sbjct: 481 LYGYGSYEICVEAHFQESRLSLLDRGFIFAIAHIRGGGEMGRQWYENGKLLKKKNTFTDF 540
Query: 580 IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP 639
I CAEYLI+ YC+KEKLCIEGRSAGGLLIGAVLNMRPDLF+AA+A VPFVDVLTTMLDP
Sbjct: 541 IVCAEYLIEIKYCSKEKLCIEGRSAGGLLIGAVLNMRPDLFRAAIAGVPFVDVLTTMLDP 600
Query: 640 TIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKF 699
TIPLTT+EWEEWGDP KEEFYFYMKSYSPVDN+KAQNYP+ILVTAGLNDPRV+YSEPAK
Sbjct: 601 TIPLTTSEWEEWGDPRKEEFYFYMKSYSPVDNIKAQNYPNILVTAGLNDPRVLYSEPAKL 660
Query: 700 VAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVGSEQS 758
VAKLR+ KTDDNILLFKCE+ AGH SKSGRFE+L+E AFTYTF++++L M P +GS Q+
Sbjct: 661 VAKLRDTKTDDNILLFKCEMAAGHSSKSGRFEKLQEYAFTYTFIIKSLDMAPPLGSGQN 719
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458732|ref|XP_004147101.1| PREDICTED: protease 2-like [Cucumis sativus] gi|449517064|ref|XP_004165566.1| PREDICTED: protease 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1162 bits (3006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/739 (73%), Positives = 647/739 (87%), Gaps = 7/739 (0%)
Query: 19 LNLPRVICSSSSLSSSDSKTSTATMMSQSKLPSPPVAKKVEHKMELFGDVRVDNYYWLRD 78
L L V+ S++S S +T M+QS SPPVA KVEHKMELFGDVR+DNYYWLRD
Sbjct: 24 LYLSPVLPSAASFRHFRSPVAT---MNQSH--SPPVANKVEHKMELFGDVRIDNYYWLRD 78
Query: 79 DSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTR 138
DSRS+P+VL+YL++EN Y +S MSGTKK+ED +F+E++GRIK++D++ P R+GSYYYY R
Sbjct: 79 DSRSNPDVLSYLREENRYTDSVMSGTKKVEDQIFSEIRGRIKEDDITVPERKGSYYYYER 138
Query: 139 TLEGKEYVQHCRRLI-HNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQ 197
TLEGKEYVQ+CRR + E SVHDTM TGP+APPEH+ILDENVKAE + +YS+GCF+
Sbjct: 139 TLEGKEYVQYCRRFVPRGEEEAISVHDTMPTGPNAPPEHVILDENVKAENQSYYSIGCFE 198
Query: 198 VSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEI 257
VSP+NKLVAYAEDTKGDEIYTVY+ID ETG PVGKPLVGVT+ ++WAG++ALVYITMDEI
Sbjct: 199 VSPNNKLVAYAEDTKGDEIYTVYIIDAETGAPVGKPLVGVTSYLKWAGDDALVYITMDEI 258
Query: 258 LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS 317
LRPDKAWLHKL +QS D CLYHEKDD++SL L+ASESKK+LFIASESK TRF FYLDVS
Sbjct: 259 LRPDKAWLHKLGTEQSMDTCLYHEKDDMFSLDLEASESKKYLFIASESKFTRFNFYLDVS 318
Query: 318 KPEE-LRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE 376
+PE+ L VLTPRV G+DT SHRGNHFFI RRS+E+FNSE++ACP+DNTS TTV++PHRE
Sbjct: 319 RPEDGLVVLTPRVDGIDTYPSHRGNHFFILRRSEEIFNSEVVACPLDNTSATTVILPHRE 378
Query: 377 SVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSE 436
SVK+Q+I+LF++H+ + ERE GL K+ Y LP +GEPLK+L+GG++V+F D YS+D E
Sbjct: 379 SVKIQEIELFLNHIVILEREDGLPKVVVYSLPDIGEPLKTLEGGRAVDFADATYSVDALE 438
Query: 437 SVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDG 496
S FSS ILRF YSS++TPPS YDYDM G+SVLKK+ETVLGGFD+N Y TERKWA+A DG
Sbjct: 439 SEFSSSILRFCYSSMKTPPSTYDYDMKTGVSVLKKVETVLGGFDSNKYVTERKWATALDG 498
Query: 497 TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGG 556
T++P+ IVYRK+LVKLDGSDPLLLYGYGSYE C DP+F +SR+SLLDRGFI+ IA IRGG
Sbjct: 499 TKVPLSIVYRKDLVKLDGSDPLLLYGYGSYEYCIDPSFKASRISLLDRGFIYVIAHIRGG 558
Query: 557 GELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR 616
GE+GRQWYENGK LKKKNTFTDFI+ AEYLI+N YC+KEKLCI GRSAGGLLIGAV+NMR
Sbjct: 559 GEMGRQWYENGKLLKKKNTFTDFISSAEYLIENKYCSKEKLCINGRSAGGLLIGAVINMR 618
Query: 617 PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQN 676
PDLFKAA+A VPFVDVLTTMLDPTIPLTT+EWEEWGDP KEEFYFYMKSYSPVDNVKAQN
Sbjct: 619 PDLFKAAIAGVPFVDVLTTMLDPTIPLTTSEWEEWGDPRKEEFYFYMKSYSPVDNVKAQN 678
Query: 677 YPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREA 736
YP +L+TAGLNDPRV+YSEPAKFVAKLR KTD+N+LLFKCELGAGHFSKSGRFE+L+E
Sbjct: 679 YPDVLITAGLNDPRVLYSEPAKFVAKLRATKTDNNLLLFKCELGAGHFSKSGRFEKLQED 738
Query: 737 AFTYTFLMRALSMLPSVGS 755
AFTY F++++L+M+P+VG+
Sbjct: 739 AFTYAFILKSLNMIPAVGN 757
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224095196|ref|XP_002310359.1| predicted protein [Populus trichocarpa] gi|222853262|gb|EEE90809.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1157 bits (2993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/709 (76%), Positives = 620/709 (87%), Gaps = 2/709 (0%)
Query: 49 LPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIE 108
+ SPPVAKKVEHKME+FGDVRVDNYYWLRDDSR++PEVL+YL+QEN Y +S MSGTK+ E
Sbjct: 1 MHSPPVAKKVEHKMEMFGDVRVDNYYWLRDDSRTNPEVLSYLQQENAYTDSVMSGTKQFE 60
Query: 109 DNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHN-NEAPPSVHDTME 167
D +F E++GRIK++D+SAP+R+G YYYYTR LEGKEYVQHCRRLI N N P SVHDTM
Sbjct: 61 DQLFKEIRGRIKEDDISAPYRKGPYYYYTRNLEGKEYVQHCRRLIPNYNTTPCSVHDTMP 120
Query: 168 TGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG 227
TGPD PPEH+ILDENVKA+ FYS+ F+VSP++KLVA AEDTKGDEIY+V+VID ETG
Sbjct: 121 TGPDDPPEHVILDENVKAQEHRFYSIQAFKVSPNHKLVACAEDTKGDEIYSVHVIDAETG 180
Query: 228 TPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYS 287
PVGKPL VT+ VEWA ++ LVYITMDEILRPDK WLHKL DQS+DICLYHEKDD +S
Sbjct: 181 APVGKPLTSVTSHVEWANDDTLVYITMDEILRPDKVWLHKLGTDQSSDICLYHEKDDTFS 240
Query: 288 LGLQASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFIT 346
+GLQ SES+KFLF+ SESKIT F+F++D SKPE+ L+VLTPRVVG+D ASHRGNHFFI
Sbjct: 241 IGLQKSESQKFLFVGSESKITSFIFFIDASKPEDGLKVLTPRVVGIDNRASHRGNHFFII 300
Query: 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYR 406
RRS+E FNSEL+ACPVD+ S TTVLIPHRE +K+QD LF +HLAVYERE GL K+T YR
Sbjct: 301 RRSEEFFNSELVACPVDDVSVTTVLIPHRERIKIQDTHLFANHLAVYERENGLPKVTVYR 360
Query: 407 LPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466
LPAV EPL SL+ G++++FIDPVY++DP+ S F+S +LRF YSSLRTP SVYDYDM+ G
Sbjct: 361 LPAVDEPLTSLEDGRAIDFIDPVYTVDPAGSEFNSSVLRFSYSSLRTPNSVYDYDMNTGT 420
Query: 467 SVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSY 526
SV+KKI TVLGGFD + YFTERKWA+ASDGTQ+P+ IVYRKNLV LDGSDPLLLYGYGSY
Sbjct: 421 SVVKKIVTVLGGFDASEYFTERKWATASDGTQVPMSIVYRKNLVNLDGSDPLLLYGYGSY 480
Query: 527 EICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYL 586
E+C DP F +SRLS+LDRGFIFAIA IRGGGE+GRQWYENGK LKKKNTFTDFIACAEYL
Sbjct: 481 EVCIDPWFKASRLSILDRGFIFAIAHIRGGGEMGRQWYENGKCLKKKNTFTDFIACAEYL 540
Query: 587 IKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTA 646
I+ YC+KEKLCIEGRSAGGLL+G+VLNMRPDLFK A A VPFVD LTTMLDPTIPLTT+
Sbjct: 541 IEQRYCSKEKLCIEGRSAGGLLMGSVLNMRPDLFKVAFAGVPFVDALTTMLDPTIPLTTS 600
Query: 647 EWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREM 706
EWEEWGDP KEEFY YMKSYSPVDNVKAQNYPHILVTAGL+DPRVMYSEPAKFVAKLRE
Sbjct: 601 EWEEWGDPRKEEFYHYMKSYSPVDNVKAQNYPHILVTAGLHDPRVMYSEPAKFVAKLRET 660
Query: 707 KTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVGS 755
KTD+NILL KCE GAGH SKSGRFE+L+E AF Y F+++AL M+P + S
Sbjct: 661 KTDNNILLLKCEFGAGHSSKSGRFEKLQEQAFIYAFILKALDMIPELSS 709
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742723|emb|CBI35357.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1150 bits (2976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/696 (77%), Positives = 618/696 (88%), Gaps = 1/696 (0%)
Query: 60 HKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRI 119
H+MELFGDVR+DNYYWLRDDSRS PEVL+YL+ EN Y + MSGTK +ED ++A+ +GRI
Sbjct: 24 HEMELFGDVRIDNYYWLRDDSRSSPEVLSYLQAENAYTDFIMSGTKHLEDQIYADTRGRI 83
Query: 120 KQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLIL 179
K++D+SAP R+G+YYYY RTL GKEYVQHCRRL+ EA PSV+DTM TGPDAP EH+IL
Sbjct: 84 KEDDISAPVRRGAYYYYKRTLAGKEYVQHCRRLVSPVEALPSVYDTMPTGPDAPQEHVIL 143
Query: 180 DENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTA 239
DEN KA+ +YS+G F+VSP+NKLVAYAEDTKGDEIYTVY+ID ET TPVGKPLV +T+
Sbjct: 144 DENTKAQEHTYYSIGAFKVSPNNKLVAYAEDTKGDEIYTVYIIDAETRTPVGKPLVRITS 203
Query: 240 SVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFL 299
+EWAGNEAL+YITMDE+LRPDK WLHKL DQS+D CLYHEKDD++SLGLQASESK+FL
Sbjct: 204 DLEWAGNEALLYITMDEVLRPDKVWLHKLGTDQSSDSCLYHEKDDMFSLGLQASESKQFL 263
Query: 300 FIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELL 358
F+ S SK T F+FYLDVSKPE L VLTPR+ G+DT+ASHRGNHF+I RRS+E FNSE+L
Sbjct: 264 FVESGSKNTGFIFYLDVSKPEGGLTVLTPRLDGIDTSASHRGNHFYIKRRSNEYFNSEVL 323
Query: 359 ACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQ 418
ACP+DN S TVLIPHRESVK+Q IQLF DHL V+ERE GL K+T YRLPAVGEPL SLQ
Sbjct: 324 ACPLDNVSTMTVLIPHRESVKIQKIQLFSDHLVVHERENGLPKVTVYRLPAVGEPLTSLQ 383
Query: 419 GGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGG 478
GG++++F+DPVY++DPSES FSS ILRF YSSLRTP SVYDYDM GISVLK IETVLG
Sbjct: 384 GGQTIDFLDPVYTVDPSESQFSSSILRFSYSSLRTPRSVYDYDMRTGISVLKNIETVLGD 443
Query: 479 FDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSR 538
FD + Y TERKWA+ASDGTQIP+ IVYRK+LVKLDGSDPLLLYGYGSYEIC DP+F +SR
Sbjct: 444 FDASKYITERKWANASDGTQIPLSIVYRKDLVKLDGSDPLLLYGYGSYEICIDPSFKASR 503
Query: 539 LSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLC 598
LSLLDRGFIFAIA IRGGGE+GRQWYENGK LKK+NTFTDFIACAEYLI+ +C+KEKLC
Sbjct: 504 LSLLDRGFIFAIAHIRGGGEMGRQWYENGKLLKKRNTFTDFIACAEYLIEMKFCSKEKLC 563
Query: 599 IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEE 658
I+G SAGGLLIGAVLNMRPDLFKAAV VPFVDV+TTMLDP+IPLTT+EWEEWGDP KEE
Sbjct: 564 IQGGSAGGLLIGAVLNMRPDLFKAAVTRVPFVDVVTTMLDPSIPLTTSEWEEWGDPRKEE 623
Query: 659 FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
FYFYMKSYSPVDN+KAQNYP ILVTAGLNDPRVMYSEPAKFVAKLR+MK DDN+LLFKCE
Sbjct: 624 FYFYMKSYSPVDNIKAQNYPKILVTAGLNDPRVMYSEPAKFVAKLRDMKMDDNVLLFKCE 683
Query: 719 LGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVG 754
LGAGHFSKSGRFE+L+E AF TF+++AL+M+P++G
Sbjct: 684 LGAGHFSKSGRFEKLKEEAFVDTFILKALNMVPTLG 719
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742722|emb|CBI35356.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1148 bits (2970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/698 (76%), Positives = 618/698 (88%), Gaps = 1/698 (0%)
Query: 62 MELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQ 121
ME+FGDVR+DNYYWLRDDSRSDP+VL+YL+ EN Y + MSGTK +E+ ++AE++GRIK+
Sbjct: 1 MEMFGDVRIDNYYWLRDDSRSDPQVLSYLRDENAYTDLLMSGTKHLENQIYAEIRGRIKE 60
Query: 122 EDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDE 181
+D+S P R+G YYYY RTLEGKEYVQ+CRRL+ N E PPSV++TM TGP APPEH+ILDE
Sbjct: 61 DDISVPLRKGPYYYYQRTLEGKEYVQYCRRLVPNVEVPPSVYETMPTGPSAPPEHVILDE 120
Query: 182 NVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASV 241
N+KA+ +YS+G F++SP++KLVAYAEDTKGDEIYTVYVID ET PVGKP+VGVT +
Sbjct: 121 NIKAQEHAYYSIGAFKISPNSKLVAYAEDTKGDEIYTVYVIDAETRAPVGKPIVGVTPYL 180
Query: 242 EWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFI 301
EW G+EAL+YITMDE LRPDK WLHKLE DQS+D CLYHEKD+++S+ L+ASESKKF+F+
Sbjct: 181 EWVGDEALLYITMDETLRPDKVWLHKLETDQSSDSCLYHEKDNMFSVDLEASESKKFVFV 240
Query: 302 ASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLAC 360
SESK TRF+F LDVSKPE L VLTPR+ G+DT+ASHRGNHFFI RRSDE FNSE+LAC
Sbjct: 241 GSESKTTRFIFNLDVSKPEGGLMVLTPRLDGIDTSASHRGNHFFIKRRSDEFFNSEVLAC 300
Query: 361 PVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGG 420
P++N SETTVL+PHRESVK+QDIQLF HL VYERE GL K+T YRLPAVGEPL SLQGG
Sbjct: 301 PLNNISETTVLLPHRESVKIQDIQLFSGHLVVYERENGLPKVTFYRLPAVGEPLGSLQGG 360
Query: 421 KSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFD 480
++V+F+DP+YS+DPSES FSS ILRF YSSLRTP SVYDYDM+ G+SVLKKI+TVLG FD
Sbjct: 361 RTVDFLDPIYSVDPSESQFSSSILRFSYSSLRTPDSVYDYDMNTGVSVLKKIQTVLGNFD 420
Query: 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLS 540
+ Y TERKWA+A DGTQIPI IVYRK+LVKLDGSDPLLLYGYGSYEIC + F SRLS
Sbjct: 421 ASKYITERKWANAQDGTQIPISIVYRKDLVKLDGSDPLLLYGYGSYEICVEAHFQESRLS 480
Query: 541 LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIE 600
LLDRGFIFAIA IRGGGE+GRQWYENGK LKKKNTFTDFI CAEYLI+ YC+KEKLCIE
Sbjct: 481 LLDRGFIFAIAHIRGGGEMGRQWYENGKLLKKKNTFTDFIVCAEYLIEIKYCSKEKLCIE 540
Query: 601 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFY 660
GRSAGGLLIGAVLNMRPDLF+AA+A VPFVDVLTTMLDPTIPLTT+EWEEWGDP KEEFY
Sbjct: 541 GRSAGGLLIGAVLNMRPDLFRAAIAGVPFVDVLTTMLDPTIPLTTSEWEEWGDPRKEEFY 600
Query: 661 FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 720
FYMKSYSPVDN+KAQNYP+ILVTAGLNDPRV+YSEPAK VAKLR+ KTDDNILLFKCE+
Sbjct: 601 FYMKSYSPVDNIKAQNYPNILVTAGLNDPRVLYSEPAKLVAKLRDTKTDDNILLFKCEMA 660
Query: 721 AGHFSKSGRFERLREAAFTYTFLMRALSMLPSVGSEQS 758
AGH SKSGRFE+L+E AFTYTF++++L M P +GS Q+
Sbjct: 661 AGHSSKSGRFEKLQEYAFTYTFIIKSLDMAPPLGSGQN 698
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297847380|ref|XP_002891571.1| prolyl oligopeptidase family protein [Arabidopsis lyrata subsp. lyrata] gi|297337413|gb|EFH67830.1| prolyl oligopeptidase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1145 bits (2961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/712 (74%), Positives = 627/712 (88%), Gaps = 3/712 (0%)
Query: 44 MSQSKLPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSG 103
M++SK SPPVAKKVEH ME+FGDVRVDNYYWLRDDSRS+P++L+YL++EN Y + MSG
Sbjct: 1 MAESK--SPPVAKKVEHVMEMFGDVRVDNYYWLRDDSRSNPDMLSYLREENHYTDFVMSG 58
Query: 104 TKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVH 163
TK+ E+ +FAE++GRIK++D+SAP R+G YYYY + L+GKEYVQHCRRLI +N+A PSV+
Sbjct: 59 TKQFENQLFAEIRGRIKEDDISAPLRKGPYYYYEKNLQGKEYVQHCRRLIPDNKAEPSVY 118
Query: 164 DTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVID 223
DTM TGPDAPPEH++LDEN+KA+ +Y +G F+ SPD+KLVAYAEDTKGDEIYTV VID
Sbjct: 119 DTMLTGPDAPPEHVLLDENIKAQEHDYYRIGAFKASPDHKLVAYAEDTKGDEIYTVNVID 178
Query: 224 IETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKD 283
E PVG+ L G+T+ +EWAGN+ALVYITMDEILRPDK WLHKL +Q +D+CLYHEKD
Sbjct: 179 SEALKPVGEQLKGLTSYLEWAGNDALVYITMDEILRPDKVWLHKLGTEQGSDVCLYHEKD 238
Query: 284 DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNH 342
D++SL L ASES K+LF+ASESK TRFVF LDVSKP++ LRVLTPRV G+D++ SHRGNH
Sbjct: 239 DMFSLELHASESHKYLFVASESKTTRFVFSLDVSKPQDGLRVLTPRVDGIDSSVSHRGNH 298
Query: 343 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKI 402
FFI RRS E +NSEL+ACPV++TS+TTVL+PHRESVK+Q+IQLF DHLAV+ERE GLQKI
Sbjct: 299 FFIQRRSTEFYNSELVACPVNDTSKTTVLLPHRESVKIQEIQLFRDHLAVFEREQGLQKI 358
Query: 403 TTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDM 462
T +RLPA G+PL+ LQGG+SV F+DPVYS+D +ES F SR+LRF YSS++TPPSVYDYDM
Sbjct: 359 TVHRLPAEGQPLERLQGGRSVIFVDPVYSVDSTESEFPSRVLRFKYSSMKTPPSVYDYDM 418
Query: 463 DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYG 522
D G SV+KKI+TVLGGFD +NY TERKW +ASDGTQIP+ IVY KNL KLDGSDPLLLYG
Sbjct: 419 DSGTSVVKKIDTVLGGFDVSNYVTERKWVTASDGTQIPMSIVYNKNLAKLDGSDPLLLYG 478
Query: 523 YGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC 582
YGSYEI DP F +SRLSLLDRGFIF IA +RGGGE+GRQWYENGK LKKKNTFTDFIAC
Sbjct: 479 YGSYEISVDPYFKTSRLSLLDRGFIFVIAHVRGGGEMGRQWYENGKLLKKKNTFTDFIAC 538
Query: 583 AEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 642
AE LI+ YC+KE+LC+EGRSAGGLL+GAV+NMRPDLFK VA VPFVDVLTTMLDPTIP
Sbjct: 539 AERLIELKYCSKERLCMEGRSAGGLLMGAVVNMRPDLFKVVVAGVPFVDVLTTMLDPTIP 598
Query: 643 LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAK 702
LTT+EWEEWGDP KEEFYFYMKSYSPVDNV AQNYP++LVTAGLNDPRVMYSEP K+VAK
Sbjct: 599 LTTSEWEEWGDPRKEEFYFYMKSYSPVDNVTAQNYPNMLVTAGLNDPRVMYSEPGKWVAK 658
Query: 703 LREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVG 754
LREMKTD+N+LLFKCELGAGHFSKSGRFE+L+E AF + F+M+ L M+P+ G
Sbjct: 659 LREMKTDNNVLLFKCELGAGHFSKSGRFEKLQEDAFMFAFMMKVLDMIPASG 710
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575387|ref|XP_003555823.1| PREDICTED: protease 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1144 bits (2959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/697 (78%), Positives = 617/697 (88%), Gaps = 1/697 (0%)
Query: 54 VAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFA 113
VAKKVEH ME+FGDVR+DNYYWLRDDSR+DPEVL+YL+QEN Y +S MSGTK+ ED +FA
Sbjct: 66 VAKKVEHAMEMFGDVRIDNYYWLRDDSRTDPEVLSYLRQENAYTDSIMSGTKEFEDKLFA 125
Query: 114 ELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAP 173
E++GRIK+EDVSAP R+G YYYY RTLEGKEYVQ+CRRLI +N+ PSVHD M TGP+AP
Sbjct: 126 EIRGRIKEEDVSAPLRKGPYYYYKRTLEGKEYVQYCRRLISDNQKVPSVHDIMPTGPEAP 185
Query: 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP 233
PEH+ILD NVKA+ +YS+G F+VSP+NKLVAYAEDTKGDEIYT+YVID+ET +G+P
Sbjct: 186 PEHVILDVNVKAQHHLYYSIGAFKVSPNNKLVAYAEDTKGDEIYTIYVIDVETQATIGEP 245
Query: 234 LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQAS 293
LVGVT+ +EWAG+ A VYITMDEILRPDKAW H L +QS D CLY EKDD++SL LQAS
Sbjct: 246 LVGVTSYLEWAGDNAFVYITMDEILRPDKAWFHVLGTEQSKDTCLYVEKDDMFSLDLQAS 305
Query: 294 ESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRRSDEL 352
ESKK+LF+ASESK TRF FYLDVSKPEE L+VLTPRV G+DT SHRG+HFFI RRSD+
Sbjct: 306 ESKKYLFVASESKNTRFNFYLDVSKPEEGLKVLTPRVDGIDTTVSHRGDHFFIKRRSDQF 365
Query: 353 FNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGE 412
FNSE++AC V+NTS TTVLIPHRESVK+Q+IQLF DHL YERE GL KI Y LP +GE
Sbjct: 366 FNSEVVACAVNNTSSTTVLIPHRESVKIQEIQLFSDHLVAYERENGLPKIIVYHLPPIGE 425
Query: 413 PLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKI 472
PL+SL+ G++V F+DPVYS + S+S FSS ILRF YSSLRTP SVYDYDM GISVLKKI
Sbjct: 426 PLRSLESGQAVSFVDPVYSAESSDSEFSSSILRFSYSSLRTPSSVYDYDMKAGISVLKKI 485
Query: 473 ETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP 532
++VLGGFD Y TER+WA +SDGT IPI IVYRK+LVKLDGSDPLLLYGYGSYEIC DP
Sbjct: 486 DSVLGGFDATRYVTERQWAPSSDGTLIPISIVYRKDLVKLDGSDPLLLYGYGSYEICIDP 545
Query: 533 AFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 592
+F S+RLSLLDRGFI+AIA IRGGGE+GRQWYENGK LKKKNTFTDFIACAEYLI+ +C
Sbjct: 546 SFKSARLSLLDRGFIYAIAHIRGGGEMGRQWYENGKLLKKKNTFTDFIACAEYLIEKKFC 605
Query: 593 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWG 652
+KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA VPFVDV+TTMLDPTIPLTT+EWEEWG
Sbjct: 606 SKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAGVPFVDVVTTMLDPTIPLTTSEWEEWG 665
Query: 653 DPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 712
DP KEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRV+YSEPAKFVAKLR+MKTDDNI
Sbjct: 666 DPRKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVLYSEPAKFVAKLRDMKTDDNI 725
Query: 713 LLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749
LLFKCELGAGHFSKSGRFE+L+E AFTY ++M+ L+M
Sbjct: 726 LLFKCELGAGHFSKSGRFEKLQEDAFTYAYIMKTLNM 762
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18403046|ref|NP_564567.1| oligopeptidase B [Arabidopsis thaliana] gi|5734786|gb|AAD50051.1|AC007980_16 Similar to oligopeptidases [Arabidopsis thaliana] gi|19310465|gb|AAL84967.1| At1g50380/F14I3_27 [Arabidopsis thaliana] gi|332194421|gb|AEE32542.1| oligopeptidase B [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1142 bits (2954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/712 (74%), Positives = 625/712 (87%), Gaps = 3/712 (0%)
Query: 44 MSQSKLPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSG 103
M++S+ SPPVAKKVEH ME+FGDVRVDNYYWLRDDSR++P++L+YL++EN Y + MSG
Sbjct: 1 MAESR--SPPVAKKVEHVMEMFGDVRVDNYYWLRDDSRTNPDMLSYLREENHYTDFVMSG 58
Query: 104 TKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVH 163
TK+ E+ +FAE++GRIK++D+SAP R+G YYYY + L+GKEY+QHCRRLI +N+A PSV+
Sbjct: 59 TKQFENQLFAEIRGRIKEDDISAPLRKGPYYYYEKNLQGKEYIQHCRRLITDNKAEPSVY 118
Query: 164 DTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVID 223
DTM TGPDAPPEH+ILDEN KA+ +Y +G F+ SPD+KLVAYAEDTKGDEIYTV VID
Sbjct: 119 DTMPTGPDAPPEHVILDENTKAQEHDYYRIGAFKASPDHKLVAYAEDTKGDEIYTVNVID 178
Query: 224 IETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKD 283
E PVG+ L G+T+ +EWAGN+AL+YITMDEILRPDK WLHKL +QS+D+CLYHEKD
Sbjct: 179 SEALKPVGQQLKGLTSYLEWAGNDALLYITMDEILRPDKVWLHKLGTEQSSDVCLYHEKD 238
Query: 284 DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNH 342
D++SL L ASES K+LF+ASESK TRFVF LDVSK ++ LRVLTPRV G+D++ SHRGNH
Sbjct: 239 DMFSLELHASESHKYLFVASESKTTRFVFSLDVSKTQDGLRVLTPRVDGIDSSVSHRGNH 298
Query: 343 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKI 402
FFI RRS E +NSEL+ACPVD+TS+TTVL+PHRESVK+Q+IQLF DHLAV+ERE GLQKI
Sbjct: 299 FFIQRRSTEFYNSELIACPVDDTSKTTVLLPHRESVKIQEIQLFRDHLAVFERENGLQKI 358
Query: 403 TTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDM 462
T +RLPA G+PL+ LQGG++V F+DPVYS+D +ES FSSR+LRF Y S++TPPSVYDYDM
Sbjct: 359 TVHRLPAEGQPLEGLQGGRNVSFVDPVYSVDSTESEFSSRVLRFKYCSMKTPPSVYDYDM 418
Query: 463 DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYG 522
D G SV+KKI+TVLGGFD +NY TERKW +ASDGTQIP+ IVY K L KLDGSDPLLLYG
Sbjct: 419 DSGTSVVKKIDTVLGGFDASNYVTERKWVAASDGTQIPMSIVYNKKLAKLDGSDPLLLYG 478
Query: 523 YGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC 582
YGSYEI DP F +SRLSLLDRGF F IA +RGGGE+GRQWYENGK LKKKNTFTDFIAC
Sbjct: 479 YGSYEISVDPYFKASRLSLLDRGFTFVIAHVRGGGEMGRQWYENGKLLKKKNTFTDFIAC 538
Query: 583 AEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 642
AE LI+ YC+KEKLC+EGRSAGGLL+GAV+NMRPDLFK +A VPFVDVLTTMLDPTIP
Sbjct: 539 AERLIELKYCSKEKLCMEGRSAGGLLMGAVVNMRPDLFKVVIAGVPFVDVLTTMLDPTIP 598
Query: 643 LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAK 702
LTT+EWEEWGDP KEEFYFYMKSYSPVDNV AQNYP++LVTAGLNDPRVMYSEP K+VAK
Sbjct: 599 LTTSEWEEWGDPRKEEFYFYMKSYSPVDNVTAQNYPNMLVTAGLNDPRVMYSEPGKWVAK 658
Query: 703 LREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVG 754
LREMKTD+N+LLFKCELGAGHFSKSGRFE+L+E AFT+ F+M+ L M+P+ G
Sbjct: 659 LREMKTDNNVLLFKCELGAGHFSKSGRFEKLQEDAFTFAFMMKVLDMIPASG 710
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484110|ref|XP_003633065.1| PREDICTED: protease 2-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1132 bits (2927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/689 (76%), Positives = 608/689 (88%), Gaps = 2/689 (0%)
Query: 41 ATMMSQSKLPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESA 100
AT +Q LP PPVA KV+H+ME+FGDVR+DNYYWLRDDSRSDP+VL+YL+ EN Y +
Sbjct: 2 ATAKAQP-LPPPPVANKVKHEMEMFGDVRIDNYYWLRDDSRSDPQVLSYLRDENAYTDLL 60
Query: 101 MSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPP 160
MSGTK +E+ ++AE++GRIK++D+S P R+G YYYY RTLEGKEYVQ+CRRL+ N E PP
Sbjct: 61 MSGTKHLENQIYAEIRGRIKEDDISVPLRKGPYYYYQRTLEGKEYVQYCRRLVPNVEVPP 120
Query: 161 SVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVY 220
SV++TM TGP APPEH+ILDEN+KA+ +YS+G F++SP++KLVAYAEDTKGDEIYTVY
Sbjct: 121 SVYETMPTGPSAPPEHVILDENIKAQEHAYYSIGAFKISPNSKLVAYAEDTKGDEIYTVY 180
Query: 221 VIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYH 280
VID ET PVGKP+VGVT +EW G+EAL+YITMDE LRPDK WLHKLE DQS+D CLYH
Sbjct: 181 VIDAETRAPVGKPIVGVTPYLEWVGDEALLYITMDETLRPDKVWLHKLETDQSSDSCLYH 240
Query: 281 EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHR 339
EKD+++S+ L+ASESKKF+F+ SESK TRF+F LDVSKPE L VLTPR+ G+DT+ASHR
Sbjct: 241 EKDNMFSVDLEASESKKFVFVGSESKTTRFIFNLDVSKPEGGLMVLTPRLDGIDTSASHR 300
Query: 340 GNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGL 399
GNHFFI RRSDE FNSE+LACP++N SETTVL+PHRESVK+QDIQLF HL VYERE GL
Sbjct: 301 GNHFFIKRRSDEFFNSEVLACPLNNISETTVLLPHRESVKIQDIQLFSGHLVVYERENGL 360
Query: 400 QKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYD 459
K+T YRLPAVGEPL SLQGG++V+F+DP+YS+DPSES FSS ILRF YSSLRTP SVYD
Sbjct: 361 PKVTFYRLPAVGEPLGSLQGGRTVDFLDPIYSVDPSESQFSSSILRFSYSSLRTPDSVYD 420
Query: 460 YDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLL 519
YDM+ G+SVLKKI+TVLG FD + Y TERKWA+A DGTQIPI IVYRK+LVKLDGSDPLL
Sbjct: 421 YDMNTGVSVLKKIQTVLGNFDASKYITERKWANAQDGTQIPISIVYRKDLVKLDGSDPLL 480
Query: 520 LYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF 579
LYGYGSYEIC + F SRLSLLDRGFIFAIA IRGGGE+GRQWYENGK LKKKNTFTDF
Sbjct: 481 LYGYGSYEICVEAHFQESRLSLLDRGFIFAIAHIRGGGEMGRQWYENGKLLKKKNTFTDF 540
Query: 580 IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP 639
I CAEYLI+ YC+KEKLCIEGRSAGGLLIGAVLNMRPDLF+AA+A VPFVDVLTTMLDP
Sbjct: 541 IVCAEYLIEIKYCSKEKLCIEGRSAGGLLIGAVLNMRPDLFRAAIAGVPFVDVLTTMLDP 600
Query: 640 TIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKF 699
TIPLTT+EWEEWGDP KEEFYFYMKSYSPVDN+KAQNYP+ILVTAGLNDPRV+YSEPAK
Sbjct: 601 TIPLTTSEWEEWGDPRKEEFYFYMKSYSPVDNIKAQNYPNILVTAGLNDPRVLYSEPAKL 660
Query: 700 VAKLREMKTDDNILLFKCELGAGHFSKSG 728
VAKLR+ KTDDNILLFKCE+ AGH SKSG
Sbjct: 661 VAKLRDTKTDDNILLFKCEMAAGHSSKSG 689
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463781|ref|XP_002267891.1| PREDICTED: protease 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1121 bits (2899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/671 (78%), Positives = 596/671 (88%), Gaps = 1/671 (0%)
Query: 60 HKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRI 119
H+MELFGDVR+DNYYWLRDDSRS PEVL+YL+ EN Y + MSGTK +ED ++A+ +GRI
Sbjct: 24 HEMELFGDVRIDNYYWLRDDSRSSPEVLSYLQAENAYTDFIMSGTKHLEDQIYADTRGRI 83
Query: 120 KQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLIL 179
K++D+SAP R+G+YYYY RTL GKEYVQHCRRL+ EA PSV+DTM TGPDAP EH+IL
Sbjct: 84 KEDDISAPVRRGAYYYYKRTLAGKEYVQHCRRLVSPVEALPSVYDTMPTGPDAPQEHVIL 143
Query: 180 DENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTA 239
DEN KA+ +YS+G F+VSP+NKLVAYAEDTKGDEIYTVY+ID ET TPVGKPLV +T+
Sbjct: 144 DENTKAQEHTYYSIGAFKVSPNNKLVAYAEDTKGDEIYTVYIIDAETRTPVGKPLVRITS 203
Query: 240 SVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFL 299
+EWAGNEAL+YITMDE+LRPDK WLHKL DQS+D CLYHEKDD++SLGLQASESK+FL
Sbjct: 204 DLEWAGNEALLYITMDEVLRPDKVWLHKLGTDQSSDSCLYHEKDDMFSLGLQASESKQFL 263
Query: 300 FIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELL 358
F+ S SK T F+FYLDVSKPE L VLTPR+ G+DT+ASHRGNHF+I RRS+E FNSE+L
Sbjct: 264 FVESGSKNTGFIFYLDVSKPEGGLTVLTPRLDGIDTSASHRGNHFYIKRRSNEYFNSEVL 323
Query: 359 ACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQ 418
ACP+DN S TVLIPHRESVK+Q IQLF DHL V+ERE GL K+T YRLPAVGEPL SLQ
Sbjct: 324 ACPLDNVSTMTVLIPHRESVKIQKIQLFSDHLVVHERENGLPKVTVYRLPAVGEPLTSLQ 383
Query: 419 GGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGG 478
GG++++F+DPVY++DPSES FSS ILRF YSSLRTP SVYDYDM GISVLK IETVLG
Sbjct: 384 GGQTIDFLDPVYTVDPSESQFSSSILRFSYSSLRTPRSVYDYDMRTGISVLKNIETVLGD 443
Query: 479 FDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSR 538
FD + Y TERKWA+ASDGTQIP+ IVYRK+LVKLDGSDPLLLYGYGSYEIC DP+F +SR
Sbjct: 444 FDASKYITERKWANASDGTQIPLSIVYRKDLVKLDGSDPLLLYGYGSYEICIDPSFKASR 503
Query: 539 LSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLC 598
LSLLDRGFIFAIA IRGGGE+GRQWYENGK LKK+NTFTDFIACAEYLI+ +C+KEKLC
Sbjct: 504 LSLLDRGFIFAIAHIRGGGEMGRQWYENGKLLKKRNTFTDFIACAEYLIEMKFCSKEKLC 563
Query: 599 IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEE 658
I+G SAGGLLIGAVLNMRPDLFKAAV VPFVDV+TTMLDP+IPLTT+EWEEWGDP KEE
Sbjct: 564 IQGGSAGGLLIGAVLNMRPDLFKAAVTRVPFVDVVTTMLDPSIPLTTSEWEEWGDPRKEE 623
Query: 659 FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718
FYFYMKSYSPVDN+KAQNYP ILVTAGLNDPRVMYSEPAKFVAKLR+MK DDN+LLFKCE
Sbjct: 624 FYFYMKSYSPVDNIKAQNYPKILVTAGLNDPRVMYSEPAKFVAKLRDMKMDDNVLLFKCE 683
Query: 719 LGAGHFSKSGR 729
LGAGHFSKSGR
Sbjct: 684 LGAGHFSKSGR 694
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 758 | ||||||
| TAIR|locus:2011997 | 710 | AT1G50380 [Arabidopsis thalian | 0.928 | 0.991 | 0.746 | 3.8e-300 | |
| TIGR_CMR|CPS_3026 | 704 | CPS_3026 "protease II" [Colwel | 0.889 | 0.957 | 0.390 | 2.2e-128 | |
| UNIPROTKB|Q4KGJ9 | 684 | ptrB "Protease 2" [Pseudomonas | 0.862 | 0.956 | 0.403 | 1.7e-123 | |
| TIGR_CMR|CPS_4644 | 719 | CPS_4644 "protease II" [Colwel | 0.779 | 0.821 | 0.399 | 3.4e-109 | |
| UNIPROTKB|P24555 | 686 | ptrB "oligopeptidase B" [Esche | 0.840 | 0.928 | 0.397 | 4.3e-109 | |
| TIGR_CMR|SO_0144 | 711 | SO_0144 "protease II" [Shewane | 0.742 | 0.791 | 0.404 | 3.5e-107 | |
| TAIR|locus:2205415 | 757 | AT1G69020 [Arabidopsis thalian | 0.350 | 0.351 | 0.388 | 1.6e-85 | |
| TIGR_CMR|CPS_0086 | 723 | CPS_0086 "prolyl endopeptidase | 0.720 | 0.755 | 0.324 | 6.8e-71 | |
| TAIR|locus:2158098 | 792 | AT5G66960 [Arabidopsis thalian | 0.348 | 0.333 | 0.365 | 8.6e-66 | |
| DICTYBASE|DDB_G0292866 | 866 | DDB_G0292866 "oligopeptidase B | 0.580 | 0.508 | 0.322 | 6.2e-62 |
| TAIR|locus:2011997 AT1G50380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2881 (1019.2 bits), Expect = 3.8e-300, P = 3.8e-300
Identities = 526/705 (74%), Positives = 620/705 (87%)
Query: 51 SPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDN 110
SPPVAKKVEH ME+FGDVRVDNYYWLRDDSR++P++L+YL++EN Y + MSGTK+ E+
Sbjct: 6 SPPVAKKVEHVMEMFGDVRVDNYYWLRDDSRTNPDMLSYLREENHYTDFVMSGTKQFENQ 65
Query: 111 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 170
+FAE++GRIK++D+SAP R+G YYYY + L+GKEY+QHCRRLI +N+A PSV+DTM TGP
Sbjct: 66 LFAEIRGRIKEDDISAPLRKGPYYYYEKNLQGKEYIQHCRRLITDNKAEPSVYDTMPTGP 125
Query: 171 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 230
DAPPEH+ILDEN KA+ +Y +G F+ SPD+KLVAYAEDTKGDEIYTV VID E PV
Sbjct: 126 DAPPEHVILDENTKAQEHDYYRIGAFKASPDHKLVAYAEDTKGDEIYTVNVIDSEALKPV 185
Query: 231 GKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 290
G+ L G+T+ +EWAGN+AL+YITMDEILRPDK WLHKL +QS+D+CLYHEKDD++SL L
Sbjct: 186 GQQLKGLTSYLEWAGNDALLYITMDEILRPDKVWLHKLGTEQSSDVCLYHEKDDMFSLEL 245
Query: 291 QASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRRS 349
ASES K+LF+ASESK TRFVF LDVSK ++ LRVLTPRV G+D++ SHRGNHFFI RRS
Sbjct: 246 HASESHKYLFVASESKTTRFVFSLDVSKTQDGLRVLTPRVDGIDSSVSHRGNHFFIQRRS 305
Query: 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409
E +NSEL+ACPVD+TS+TTVL+PHRESVK+Q+IQLF DHLAV+ERE GLQKIT +RLPA
Sbjct: 306 TEFYNSELIACPVDDTSKTTVLLPHRESVKIQEIQLFRDHLAVFERENGLQKITVHRLPA 365
Query: 410 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 469
G+PL+ LQGG++V F+DPVYS+D +ES FSSR+LRF Y S++TPPSVYDYDMD G SV+
Sbjct: 366 EGQPLEGLQGGRNVSFVDPVYSVDSTESEFSSRVLRFKYCSMKTPPSVYDYDMDSGTSVV 425
Query: 470 KKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC 529
KKI+TVLGGFD +NY TERKW +ASDGTQIP+ IVY K L KLDGSDPLLLYGYGSYEI
Sbjct: 426 KKIDTVLGGFDASNYVTERKWVAASDGTQIPMSIVYNKKLAKLDGSDPLLLYGYGSYEIS 485
Query: 530 NDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 589
DP F +SRLSLLDRGF F IA +RGGGE+GRQWYENGK LKKKNTFTDFIACAE LI+
Sbjct: 486 VDPYFKASRLSLLDRGFTFVIAHVRGGGEMGRQWYENGKLLKKKNTFTDFIACAERLIEL 545
Query: 590 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 649
YC+KEKLC+EGRSAGGLL+GAV+NMRPDLFK +A VPFVDVLTTMLDPTIPLTT+EWE
Sbjct: 546 KYCSKEKLCMEGRSAGGLLMGAVVNMRPDLFKVVIAGVPFVDVLTTMLDPTIPLTTSEWE 605
Query: 650 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 709
EWGDP KEEFYFYMKSYSPVDNV AQNYP++LVTAGLNDPRVMYSEP K+VAKLREMKTD
Sbjct: 606 EWGDPRKEEFYFYMKSYSPVDNVTAQNYPNMLVTAGLNDPRVMYSEPGKWVAKLREMKTD 665
Query: 710 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVG 754
+N+LLFKCELGAGHFSKSGRFE+L+E AFT+ F+M+ L M+P+ G
Sbjct: 666 NNVLLFKCELGAGHFSKSGRFEKLQEDAFTFAFMMKVLDMIPASG 710
|
|
| TIGR_CMR|CPS_3026 CPS_3026 "protease II" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1260 (448.6 bits), Expect = 2.2e-128, P = 2.2e-128
Identities = 278/711 (39%), Positives = 410/711 (57%)
Query: 53 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMF 112
P+AKK+ HKME+ RVDNYYW+RDD RSD VL +L EN+Y ++ ++ K +++++F
Sbjct: 18 PIAKKIPHKMEIHNHHRVDNYYWMRDDQRSDEAVLKHLNDENNYADAMLAEQKSLQESLF 77
Query: 113 AELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDA 172
ELK RI ++D + P + G Y+Y++ +EY + R T TG +
Sbjct: 78 EELKARIVKDDNTVPEKDGKYWYHSEINGEQEYSNYYR-------------STSFTGEN- 123
Query: 173 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK 232
+ L+LD N +A+ FY +G +SP+++L+ +ED IYT+Y D+ +
Sbjct: 124 --KTLLLDVNDRAKDHEFYDLGDLSISPNDQLMTISEDIDSRRIYTIYFKDLNKSSDSDD 181
Query: 233 P-----LVGVTASVEWAG-NEALVYITMD-EILRPDKAWLHKLEADQSNDICLYHEKDDI 285
P L+ + WA N+ + Y+ D E L + + HKL + QS+D+ +Y E D
Sbjct: 182 PYLPDTLIETEGQIVWANDNKTVFYVKKDLETLLGTQVYRHKLGSPQSDDVLVYEEDDYS 241
Query: 286 YSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFF 344
+ + L S ++I + + L +P+ E L P + A G HF+
Sbjct: 242 FYMSLDKSRDDSQIYICLHATESTHYLALSADEPDGEFDELFPYQEQHEYHADKMGEHFY 301
Query: 345 ITRRSDELFNSELLACPVDNTSETT---VLIPHRESVKLQDIQLFIDHLAVYEREGGLQK 401
I + N +L+ + + +IPHR+ V L+ I+LF + V ERE G +
Sbjct: 302 IVTNF-QAKNFKLMKAAISQVHDINNWQEVIPHRKDVLLEGIELFQNFTVVTEREHGQIR 360
Query: 402 ITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVF-SSRILRFHYSSLRTPPSVYDY 460
+ GE + + F DP Y ++ S R +YSSL TP S++++
Sbjct: 361 FIVHTTQ--GE---NAGHQYPLSFDDPCYFACLGDNPEPKSTTARLYYSSLTTPGSLFEF 415
Query: 461 DMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLL 520
D+ G L K + VLG F +Y +ER + +A DGT++P+ IVYR + + DGS+PLL
Sbjct: 416 DLATGERKLLKQQKVLGDFTKEDYQSERLFITARDGTEVPVSIVYRSDTFQKDGSNPLLQ 475
Query: 521 YGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFI 580
YGYG+Y I DP F+S LSLLDRGF++ IA +RG LGR+WYE GK K+NTF DFI
Sbjct: 476 YGYGAYGITIDPDFSSQTLSLLDRGFVYVIAHVRGSEMLGREWYETGKMAHKQNTFNDFI 535
Query: 581 ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPT 640
+ L++ Y K+K+ G SAGGLL+GAV+N P+L+ A VPF+DVLTTMLD +
Sbjct: 536 DVTKALVEQGYGAKDKIFASGGSAGGLLMGAVVNQAPELYLGIGAHVPFLDVLTTMLDES 595
Query: 641 IPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFV 700
IPLTT E+ EWG+P + + Y + +YSP+DN+ AQ+YPHILVT GL+D +V Y EP K+V
Sbjct: 596 IPLTTNEYNEWGNPNEAQAYQSILAYSPIDNISAQHYPHILVTTGLHDSQVQYFEPMKWV 655
Query: 701 AKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLP 751
AK+RE KTDDN+LLFK ++ AGH SGRF+ L+E A +F +S+LP
Sbjct: 656 AKMREFKTDDNLLLFKTDMEAGHGGASGRFKSLKEKALEMSFF---ISLLP 703
|
|
| UNIPROTKB|Q4KGJ9 ptrB "Protease 2" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
Identities = 278/689 (40%), Positives = 390/689 (56%)
Query: 71 DNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQ 130
D Y WL++ R VL YLK EN Y ++ ++ + + +F E+KGRI + D+S P
Sbjct: 20 DPYAWLQE--RDTDAVLDYLKAENSYLDAQLAHQGPLRETLFQEIKGRILETDLSLPSPW 77
Query: 131 GSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGF 190
G Y YYTRT G EY +H R P D++ D E L+LD N A G GF
Sbjct: 78 GPYLYYTRTTAGDEYARHYR-------CPRPADDSLTV--DESREQLLLDPNALANG-GF 127
Query: 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALV 250
+S+G F +SPD++ +AY+ DT G+EIYT++V ++ + S+ WA + +
Sbjct: 128 FSLGAFSISPDHQRLAYSLDTTGEEIYTLFVKELASNKVSELSFDNCDGSMTWANDSLTL 187
Query: 251 YI-TMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITR 309
+ +D+ RP K ++L+ + ++ +HE D + L S S++ L ++ SK T
Sbjct: 188 FFGELDDTHRPHKLLRYRLDGTAAEEV--FHEPDGRFFLHCYRSSSERQLLLSLGSKTTG 245
Query: 310 FVFYLDVSKPE-ELRVLTPRVVGVDTAASHR---GNHFFITRRSDELFNSELLACP---- 361
+ LD ++P+ L PRV G + H G + R + + N L
Sbjct: 246 ETWALDATQPQLPFTCLAPRVEGHEYDVDHGLLDGQWTWFIRSNRDGINFALYQAADNGA 305
Query: 362 VDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGK 421
+ + +L+PH V L + L + + REGGL I + P + L +
Sbjct: 306 IPEQDDWQLLVPHNPEVMLDGVTLNAAAMTLSLREGGLPIIEVH-------P-RDLPVYR 357
Query: 422 SVEFIDPVYSIDPSESV-FSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFD 480
V+ D YS+ S+ FSS +R Y +L P V + G + K VLG FD
Sbjct: 358 -VQLPDAAYSLHVQNSLEFSSERIRLRYEALNRPAQVRQLQLADGQQQVLKETPVLGPFD 416
Query: 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLS 540
Y ++R WA+A+DGTQ+PI +V +++ L PL LYGYG+Y DP F+ +RLS
Sbjct: 417 PEAYVSQRLWATAADGTQVPISLVVKRDC--LGQPTPLYLYGYGAYGESLDPWFSHARLS 474
Query: 541 LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIE 600
LLDRG FAIA +RGGGELG WY GK K+NTF+DFIACAE+LI + ++L I
Sbjct: 475 LLDRGVAFAIAHVRGGGELGEAWYRAGKQEHKQNTFSDFIACAEHLIAQGLTSAQQLAIS 534
Query: 601 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFY 660
G SAGGLLIGAVLN RP+LFK A+A VPFVDVL TMLDP +PLT E++EWG+P + E Y
Sbjct: 535 GGSAGGLLIGAVLNQRPELFKVAIAEVPFVDVLNTMLDPELPLTVTEYDEWGNPEEPEVY 594
Query: 661 FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 720
+K+Y+P +NV+AQ YP LV AG ND RV Y E AK+VA+LR +TDDN LL K ELG
Sbjct: 595 ARIKAYAPYENVRAQAYPATLVIAGYNDSRVQYWEAAKWVARLRATRTDDNPLLLKTELG 654
Query: 721 AGHFSKSGRFERLREAAFTYTFLMRALSM 749
AGH SGR++ LR+ A Y F++ L +
Sbjct: 655 AGHGGMSGRYQGLRDVALEYAFILNILGL 683
|
|
| TIGR_CMR|CPS_4644 CPS_4644 "protease II" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 246/616 (39%), Positives = 354/616 (57%)
Query: 143 KEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDN 202
K Y + ++ NE P V + +G + ++L+ N A+ +Y V SPD
Sbjct: 117 KGYFYYASQMQGENEYPIYVRSSDFSGSNL---EVLLNVNELAKAHDYYQVSGLSASPDG 173
Query: 203 KLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAG-NEALVYITMD-EILRP 260
KL+AY EDT IYTV DI T + L G + W N+ + YI D + L
Sbjct: 174 KLLAYGEDTVSRRIYTVQFKDIAGKTLLDDRLEGTNGGIVWGNDNKTVYYIKKDPQTLLG 233
Query: 261 DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320
+ + H L Q+ D +Y E + Y GL S+ +FI S V +D +
Sbjct: 234 YQVFRHTLGTPQATDEMVYEESNKAYYTGLSKSKDGSSVFIWHSSTEASGVSVIDADNAK 293
Query: 321 EL-RVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV---LIPHRE 376
+ + R G + + S + ++I + N L+ + + T +IP +
Sbjct: 294 AMPKKFIEREEGHEYSISKMNDWYYINTNW-QATNFRLMKVNKKHLGDKTQWQDVIPAND 352
Query: 377 SVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKS--VEFIDPVYSIDP 434
+VKL+D +LF +HL +RE G+ ++T ++ L GK + F D Y++
Sbjct: 353 AVKLEDYELFANHLVYQQRENGISRLT----------IQELSSGKKQQLSFNDTAYTLSL 402
Query: 435 -SESVFSSRILRFHYSSLRTPPSVYDYDMD-MGISVLKKIETVLGGFDTNNYFTERKWAS 492
+ + LR +Y+S TP + YD D++ + + LK+ + VLG FD+NNY +ER +
Sbjct: 403 YGNNELKNNKLRLYYTSFTTPGTHYDVDLNTLDKTQLKQAK-VLGDFDSNNYASERIFVK 461
Query: 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQ 552
A DG ++P+ +VYRK+ K DG++PL Y YGSY DP+F+ SRLSLLDRGF++A+A
Sbjct: 462 ARDGKKVPVSLVYRKDKFKKDGTNPLYQYAYGSYGHTIDPSFSVSRLSLLDRGFVYAVAH 521
Query: 553 IRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAV 612
IRG LGR WYE+GK L K NTFTDFI + L Y KE + G SAGGLL+GAV
Sbjct: 522 IRGSEMLGRPWYEDGKKLTKMNTFTDFIDVTKDLTAQGYGDKENVFAVGGSAGGLLMGAV 581
Query: 613 LNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV 672
+NM P+ +K AAVPFVDV+TTMLD +IPLTT E++EWG+P ++ +Y YM SYSP D V
Sbjct: 582 INMAPEQYKGIAAAVPFVDVVTTMLDESIPLTTNEFKEWGNPKEKTYYDYMLSYSPYDQV 641
Query: 673 KAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFER 732
KAQ+YP+ILVT GL+D +V Y EP K+VAKLR+ KTDDN+LLFK ++ AGH SGRF+R
Sbjct: 642 KAQDYPNILVTTGLHDSQVQYFEPMKWVAKLRDYKTDDNLLLFKTDMEAGHGGASGRFKR 701
Query: 733 LREAAFTYTFLMRALS 748
+ + A Y+F + L+
Sbjct: 702 IHDTALQYSFFIDLLN 717
|
|
| UNIPROTKB|P24555 ptrB "oligopeptidase B" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
Identities = 268/674 (39%), Positives = 375/674 (55%)
Query: 95 DYFESAMSGTKKIEDNMFAELKGRIKQEDVSA-PFRQGSYYYYTRTLEGKE-YVQHCRRL 152
DY + S ++ + A L+ RI +E + P R+ S Y + Y C
Sbjct: 38 DYLQQENSYGHRVMASQQA-LQDRILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYA 96
Query: 153 IHNNEAPPSVH-DTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDT 211
I+ ++ S D ET +LD N +A FYS+G ++PDN ++A AED
Sbjct: 97 IYQRQSAFSEEWDEWET---------LLDANKRAAHSEFYSMGGMAITPDNTIMALAEDF 147
Query: 212 KGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDE--ILRPDKAWLHKLE 269
Y + ++ETG + L V S WA + + Y L P + W H +
Sbjct: 148 LSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWIFYYVRKHPVTLLPYQVWRHAIG 207
Query: 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPR 328
S D +Y EKDD Y + L + SK ++ I S T V LD + E V PR
Sbjct: 208 TPASQDKLIYEEKDDTYYVSLHKTTSKHYVVIHLASATTSEVRLLDAEMADAEPFVFLPR 267
Query: 329 VVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID 388
+ + H + F++ R + N L + + + LIP RE++ L+ LF D
Sbjct: 268 RKDHEYSLDHYQHRFYL-RSNRHGKNFGLYRTRMRDEQQWEELIPPRENIMLEGFTLFTD 326
Query: 389 HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYS--IDPSESVFSSRILRF 446
L V ER+ GL T+ R + + + G + F DP Y I + ++R LR+
Sbjct: 327 WLVVEERQRGL---TSLR--QINRKTREVIG---IAFDDPAYVTWIAYNPEPETAR-LRY 377
Query: 447 HYSSLRTPPSVYDYDMDMGIS-VLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVY 505
YSS+ TP ++++ DMD G VLK+ E + GF NY +E W A DG ++P+ +VY
Sbjct: 378 GYSSMTTPDTLFELDMDTGERRVLKQTE--VPGFYAANYRSEHLWIVARDGVEVPVSLVY 435
Query: 506 -RKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 564
RK+ K G +PLL+YGYGSY D F+ SRLSLLDRGF++AI +RGGGELG+QWY
Sbjct: 436 HRKHFRK--GHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWY 493
Query: 565 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIE-GRSAGGLLIGAVLNMRPDLFKAA 623
E+GKFLKKKNTF D++ + L+K Y + LC G SAGG+L+G +N RP+LF
Sbjct: 494 EDGKFLKKKNTFNDYLDACDALLKLGYGSPS-LCYAMGGSAGGMLMGVAINQRPELFHGV 552
Query: 624 VAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVT 683
+A VPFVDV+TTMLD +IPLTT E+EEWG+P ++Y YMKSYSP DNV AQ YPH+LVT
Sbjct: 553 IAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVT 612
Query: 684 AGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 743
GL+D +V Y EPAK+VAKLRE+KTDD++LL ++ +GH KSGRF+ A Y FL
Sbjct: 613 TGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFL 672
Query: 744 MR-ALSMLPSVGSE 756
+ A LP+ ++
Sbjct: 673 VALAQGTLPATPAD 686
|
|
| TIGR_CMR|SO_0144 SO_0144 "protease II" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
Identities = 239/591 (40%), Positives = 343/591 (58%)
Query: 175 EHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL 234
E L+LD N +A+G FY +G VSPD ++A+ ED +Y +Y DIE+G + L
Sbjct: 131 EQLMLDVNERAKGHEFYGLGGVSVSPDETMLAFGEDVLSRRVYNIYFKDIESGAMITDVL 190
Query: 235 VGVTASVEWAG-NEALVYITMD-EILRPDKAWLHKLEADQSNDICLYHEKDDIY--SLGL 290
+ W N + YI D + L ++ + H+L QS D+ +Y E+DD Y SLG
Sbjct: 191 ENTEGRIVWGNDNRHVFYIAKDLQTLLGNRVYRHELGTPQSRDVLVYEEQDDAYYISLGK 250
Query: 291 QASESKKFLFIASESKITRFVFYLDVSKPEEL-RVLTPRVVGVDTAASHRGNHFFITRRS 349
ES+ LF ES T V LD + P L + + R G + + S G+ +++
Sbjct: 251 SLDESQIVLF--HESTTTSEVSVLDANDPLSLFKPVLAREEGHEYSVSKLGDSYYVLTNW 308
Query: 350 DELFNSELLACPVDNTSETTV---LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYR 406
+ N L+ + + ++ + ++ H + +L+D + D+L + RE GL +I
Sbjct: 309 -QATNFRLMKVAIKDAADKSKWQEVVAHNPNARLEDELVLKDYLIIQTRENGLTRIKV-- 365
Query: 407 LPAVGEPLKSLQGGKSVEFIDPVY--SIDPSESVFSSRILRFHYSSLRTPPSVYDYDM-D 463
+P G+ K + + F +P Y +D + S + LR YSSL TP ++Y+Y + +
Sbjct: 366 MPFNGQ--KPFE----LSFDEPAYVLGLDVNAQQDSDK-LRVFYSSLTTPETIYEYHLSN 418
Query: 464 MGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGY 523
L K E VLGGFD Y ER + +A DG ++P+ +VYRK+ K DG++PL YGY
Sbjct: 419 PDRRDLLKQEQVLGGFDAGAYRAERVFVTARDGAKVPVSLVYRKDKFKKDGTNPLYQYGY 478
Query: 524 GSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACA 583
GSY +P F+SS +SLLDRGF++AIA +RGG LGR WY+ GK L KKN+F DFI
Sbjct: 479 GSYGYTVEPDFSSSVISLLDRGFVYAIAHVRGGEMLGRPWYDAGKLLNKKNSFYDFIDVT 538
Query: 584 EYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPL 643
L + Y K K+ G SAGGLL+GA+ NM P+ + A A VPFVDV+TTMLD +IPL
Sbjct: 539 TALTEQGYGDKNKVVAAGGSAGGLLMGAIANMAPEKYFAIAAHVPFVDVVTTMLDESIPL 598
Query: 644 TTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKL 703
TT E++EWG+P + ++ YM SYSP DNV YPH+LVT GL+D +V Y EPAK+VAKL
Sbjct: 599 TTNEYDEWGNPNDKTYFDYMLSYSPYDNVADHEYPHLLVTTGLHDSQVQYFEPAKWVAKL 658
Query: 704 REM-----KTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749
RE+ K DD +LLF ++ AGH KSGR+ + ++ A Y F + L M
Sbjct: 659 REVQNKWYKLDDKVLLFHVDMDAGHGGKSGRYRQYQDTAQEYAFFLSLLGM 709
|
|
| TAIR|locus:2205415 AT1G69020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 512 (185.3 bits), Expect = 1.6e-85, Sum P(3) = 1.6e-85
Identities = 105/270 (38%), Positives = 161/270 (59%)
Query: 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLS 540
++ Y ER+ S+ DG ++P+ I+Y + K S P +L GYG+Y D ++ ++RLS
Sbjct: 483 SDTYVCERQEVSSHDGVEVPLTILYSREAWKKSES-PGMLIGYGAYGEVLDKSWCTNRLS 541
Query: 541 LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIE 600
+LDRG++ A A +RGGG W+++G K+N+ DFI A+YL++ Y + L
Sbjct: 542 MLDRGWVIAFADVRGGGSGEFSWHKSGTRSLKQNSIQDFIYSAKYLVEKGYVHRHHLAAV 601
Query: 601 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFY 660
G SAG +L A +NM P LF+A + VPFVDVL T+ DP +PLT + EE+G+P + +
Sbjct: 602 GYSAGAILPAAAMNMHPSLFQAVILKVPFVDVLNTLSDPNLPLTLLDHEEFGNPDNQTDF 661
Query: 661 FYMKSYSPVDNVKAQN-YPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD--NILLFKC 717
+ SYSP D ++ YP +LVT +D RV E AK+VAK+R+ D ++ K
Sbjct: 662 GSILSYSPYDKIRKDVCYPSMLVTTSFHDSRVGVWEGAKWVAKIRDSTCHDCSRAVILKT 721
Query: 718 ELGAGHFSKSGRFERLREAAFTYTFLMRAL 747
+ GHF + GR+ + E AF Y FL++ +
Sbjct: 722 NMNGGHFGEGGRYAQCEETAFDYAFLLKVM 751
|
|
| TIGR_CMR|CPS_0086 CPS_0086 "prolyl endopeptidase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 635 (228.6 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 191/588 (32%), Positives = 291/588 (49%)
Query: 177 LILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG 236
L LD N +E G S+G S D + AYA G + + +ID+ET + PL+
Sbjct: 148 LFLDPNTFSED-GTTSMGQLSFSKDGSIAAYAISEGGSDWRKIIIIDVETKKVLETPLID 206
Query: 237 VTAS-VEWAGNEALVYITMD-----EI-LRPD--KAWLHKLEADQSNDICLYH---EKDD 284
V S + W NE Y + D E+ + D K + H L Q D ++ E+
Sbjct: 207 VKFSDISWFKNEGFYYSSYDKPEGSELSAKTDQHKLYYHVLGQPQKEDKVIFGNTAEQKR 266
Query: 285 IYSLGLQASESKKFLFIASESKITRFVFYL-DVSKPEE-LRVLTPRVVGVDTAASHRGNH 342
Y +G ++ +FL I+ + YL D++KP L +T DT
Sbjct: 267 RY-VGGTVTDDNRFLLISGAISTSGNDLYLKDLTKPNSPLLTITDNF-DADT-------- 316
Query: 343 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKI 402
+ I D+LF L P N TV S D D++ GG
Sbjct: 317 YVIENEGDKLFLVTNLGAP--NKKIVTVNAKAPASKNWTDFIAETDYVLSASTGGGFF-F 373
Query: 403 TTYRLPAVGEPLKSLQGGKSVEFID-P-VYSIDPSESVFSSRILRFHYSSLRTPPSVYDY 460
T Y + A+ + + GK V I+ P V S E L + +S+ +TP ++Y Y
Sbjct: 374 TEYMVDAISKVYQYDYQGKQVREINLPGVGSASALEGDKDESTLYYSFSNYKTPGTIYSY 433
Query: 461 DMDMGIS-VLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLL 519
++D G S V +K FD++ Y +++ + + DGT++P+ I Y+K ++L+G +P +
Sbjct: 434 NIDKGNSDVYRKSGAK---FDSDAYESKQVFYPSKDGTKVPMIITYKKG-IELNGKNPTI 489
Query: 520 LYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF 579
LYGYG + I P F+ SR L++G I+A+A +RGGGE G+ W++ G L K+N F DF
Sbjct: 490 LYGYGGFNISLTPRFSVSRAVWLEQGGIYAVANLRGGGEYGKTWHKAGTQLDKQNVFDDF 549
Query: 580 IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP 639
IA EYLIK Y + + L I G S GGLL+GAV+ RPDL + A+ AV +D+L
Sbjct: 550 IAAGEYLIKQDYTSSDYLAINGGSNGGLLVGAVMTQRPDLMQVALPAVGVLDMLRYH--- 606
Query: 640 TIPLTTAEWE-EWGDPWK-EEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMYSEP 696
T A W ++G + EE + Y+K YSPV NVKA +YP +VT G +D RV+ +
Sbjct: 607 TFT-AGAGWAYDYGTAEQSEEMFTYLKGYSPVHNVKAGVSYPATMVTTGDHDDRVVPAHS 665
Query: 697 AKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744
KF A+L+ + + L + E AGH + + + + + A Y F +
Sbjct: 666 FKFAAELQAKQAGNAPTLIRIETNAGHGAGTPVSKTIEQYADIYAFTL 713
|
|
| TAIR|locus:2158098 AT5G66960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 430 (156.4 bits), Expect = 8.6e-66, Sum P(2) = 8.6e-66
Identities = 98/268 (36%), Positives = 153/268 (57%)
Query: 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLS 540
T Y + S+ DG +P+ IVY + K + P LL+ +G+Y D + S S
Sbjct: 526 TEFYACDYHEVSSHDGAMVPLSIVYSR-AQKEENQKPGLLHVHGAYGEMLDKRWRSELKS 584
Query: 541 LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIE 600
LLDRG++ A A +RGGG G++W+++G+ KK N+ D+I CA+YL++N + KL
Sbjct: 585 LLDRGWVLAYADVRGGGGKGKKWHQDGRGAKKLNSIKDYIQCAKYLVENNIVEENKLAGW 644
Query: 601 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFY 660
G SAGGL++ + +N PDLF+AAV VPF+D T++ P +PLT ++EE+G P +
Sbjct: 645 GYSAGGLVVASAINHCPDLFQAAVLKVPFLDPTHTLIYPILPLTAEDYEEFGYPGDINDF 704
Query: 661 FYMKSYSPVDNV-KAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCEL 719
++ YSP DN+ K YP +LVT+ N R E AK+VA++R+ +D L
Sbjct: 705 HAIREYSPYDNIPKDVLYPAVLVTSSFNT-RFGVWEAAKWVARVRDNTFNDPERPVLLNL 763
Query: 720 GAGHFSKSGRFERLREAAFTYTFLMRAL 747
+ RF + +E+A FL++ +
Sbjct: 764 TTD-IVEENRFLQTKESALEIAFLIKMM 790
|
|
| DICTYBASE|DDB_G0292866 DDB_G0292866 "oligopeptidase B" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 6.2e-62, Sum P(3) = 6.2e-62
Identities = 155/480 (32%), Positives = 258/480 (53%)
Query: 265 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV----SKP- 319
L++ E +QS ++ +Y E++ Y L + + +++F S KI+ ++Y + S+P
Sbjct: 343 LNEEEVNQS-ELMIY-EENPAYYLDIYVPKDGEYIFYLSNCKISTLIYYNKLHDNPSEPI 400
Query: 320 --EELRVLTPRVVGVDTAASHRGNHFFITRRSDEL-FNSELLACPVDNTS--ETTVLIPH 374
+ +++ RV ++ A H G+ F+I +++ N + ++N + + IP
Sbjct: 401 TSKSYKIMLSRVDNLEYYAEHNGDEFYIFANANKGDLNIYKVKDTIENGKFHDLELFIPS 460
Query: 375 RESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID--PVYSI 432
++D+ ++ D+L + + L K R+ + + ++ + KS+E I P I
Sbjct: 461 EAQSMIKDVDMYKDYLVLND----LHKFQP-RIRIISKNAETNRFDKSLEKIITFPHKII 515
Query: 433 DPSESVFSSRILRFHYS-SLRTPP-SVYDYDMDM--G-ISVL-KKIETVLGGFDTNNYFT 486
+ S V H+ S TP +V + + G I++L + IE + + + T
Sbjct: 516 ELSMGVNGGYENNEHFFLSYCTPTQNVIRTKISLKDGTITILGESIERGPLTINPDAFET 575
Query: 487 ERKWA-SASDGT-QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR 544
+ W S SD + +IP+ I Y K V+ DG P +L+GYGSY +N L L++
Sbjct: 576 DILWVPSKSDPSIKIPLSICYNKKAVRFDGKTPCVLHGYGSYGTVYSLLYNVEDLLLMNA 635
Query: 545 GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSA 604
GFI A A +RGG ELGR WY +GK L KKNTF+D+I C EYL +N Y + L G SA
Sbjct: 636 GFIVARAHVRGGSELGRTWYNDGKLLNKKNTFSDYIDCVEYLFENKYTSPNYLIGRGSSA 695
Query: 605 GGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYF-YM 663
GGLL+ V P F ++ VPF DVLT+MLD ++PLT E+ EWG+P ++ F Y+
Sbjct: 696 GGLLMCNVALTYPHYFSGIISQVPFADVLTSMLDESLPLTIHEYGEWGNPNLDKQVFNYI 755
Query: 664 KSYSP---VD--NVKA--QNYPHILVTAGLNDPRVMYSEPAKFVAKLR-EMKT----DDN 711
K Y P +D N+++ ++ P++ +T +D RV + +P K+VAKLR ++K+ DDN
Sbjct: 756 KQYDPYILLDDPNIQSSLKSLPNLYITCSTSDYRVPFWQPLKWVAKLRNKLKSLTHGDDN 815
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 758 | |||
| COG1770 | 682 | COG1770, PtrB, Protease II [Amino acid transport a | 0.0 | |
| PRK10115 | 686 | PRK10115, PRK10115, protease 2; Provisional | 0.0 | |
| pfam02897 | 412 | pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, | 1e-116 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 7e-74 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 2e-68 | |
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 5e-18 |
| >gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 808 bits (2090), Expect = 0.0
Identities = 340/704 (48%), Positives = 448/704 (63%), Gaps = 32/704 (4%)
Query: 49 LPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIE 108
LP PP+AKKV GD RVD+Y WLRDD+ S+PEVLAYL+ EN Y E+ M+ + ++
Sbjct: 3 LPLPPIAKKVPTTRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQ 62
Query: 109 DNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMET 168
+F E+KGRIK++D+S P+R+G Y YY+RT EGKEY +CR+ E
Sbjct: 63 KKIFEEIKGRIKEDDLSVPYRKGPYEYYSRTEEGKEYPIYCRQPDEGGEG---------- 112
Query: 169 GPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT 228
E ++LD N +AEG F+S+G +SPD+ L+AY+ D GDE YT+ D+ TG
Sbjct: 113 ------EEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGE 166
Query: 229 PVGKPLVGVTASVEWAG-NEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYS 287
+ + + S WA + L Y +DE RPDK W H+L S+D +Y EKDD +
Sbjct: 167 ELPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFF 226
Query: 288 LGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFIT 346
L + S S+ ++ I+ S IT V LD PE E +V+ PR GV+ + H G+ F+I
Sbjct: 227 LSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYI- 285
Query: 347 RRSDELFNSELLACPVDNTSET-TVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTY 405
+ + N +L+ PV LIPHRE V+L+ + LF DHL + ER+ GL ++
Sbjct: 286 LSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVR 345
Query: 406 RLPAVGEPLKSLQGGKSVEFIDPVYS--IDPSESVFSSRILRFHYSSLRTPPSVYDYDMD 463
E + F D YS + + S R LR+ YSS+ TP +++DYDM
Sbjct: 346 DRKTGEER--------GIAFDDEAYSAGLSGNPEFDSDR-LRYSYSSMTTPATLFDYDMA 396
Query: 464 MGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGY 523
G L K + V GGFD +Y + R WA+A DG Q+P+ +VYRK+ KLDGS PLLLYGY
Sbjct: 397 TGERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKD-TKLDGSAPLLLYGY 455
Query: 524 GSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACA 583
G+Y I DP+F+ +RLSLLDRGF++AIA +RGGGELGR WYE+GK L KKNTFTDFIA A
Sbjct: 456 GAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAA 515
Query: 584 EYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPL 643
+L+K Y + +++ G SAGG+L+GAV NM PDLF +A VPFVDVLTTMLDP++PL
Sbjct: 516 RHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPL 575
Query: 644 TTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKL 703
T EW+EWG+P E+Y Y+KSYSP DNV+AQ YP ILVT GLNDPRV Y EPAK+VAKL
Sbjct: 576 TVTEWDEWGNPLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQYWEPAKWVAKL 635
Query: 704 REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 747
RE+KTD N LL K + AGH SGRF+RL E AF Y FL++
Sbjct: 636 RELKTDGNPLLLKTNMDAGHGGASGRFQRLEEIAFEYAFLLKLA 679
|
Length = 682 |
| >gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional | Back alignment and domain information |
|---|
Score = 550 bits (1419), Expect = 0.0
Identities = 292/701 (41%), Positives = 399/701 (56%), Gaps = 37/701 (5%)
Query: 52 PPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNM 111
P A ++ H M L GD R+DNYYWLRDD+RS PEVL YL QEN Y M+ + ++D +
Sbjct: 2 LPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLHQENSYGHRVMASQQALQDRI 61
Query: 112 FAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPD 171
E+ RI Q +VSAP+ + Y Y G EY + R+ + E D ET
Sbjct: 62 LKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQSAFSEEW-----DEWET--- 113
Query: 172 APPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG 231
+LD N +A FY++G ++PDN ++A AED Y + ++ETG
Sbjct: 114 ------LLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP 167
Query: 232 KPLVGVTASVEWAGNEALVYITMDE--ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLG 289
+ L V S WA + Y L P + W H + S D +Y EKDD + +
Sbjct: 168 ELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVS 227
Query: 290 LQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITRR 348
L + SK ++ I S T V LD + E V PR + + H H F R
Sbjct: 228 LHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFYLRS 286
Query: 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408
+ N L V + + LIP RE++ L+ LF D L V ER+ GL T+ R
Sbjct: 287 NRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGL---TSLR-- 341
Query: 409 AVGEPLKSLQGGKSVEFIDPVY----SIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDM 464
+ + + G + F DP Y + +P +SR LR+ YSS+ TP ++++ DMD
Sbjct: 342 QINRKTREVIG---IAFDDPAYVTWIAYNPEPE--TSR-LRYGYSSMTTPDTLFELDMDT 395
Query: 465 G-ISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGY 523
G VLK+ E + GFD NY +E W +A DG ++P+ +VY + + G +PLL+YGY
Sbjct: 396 GERRVLKQTE--VPGFDAANYRSEHLWITARDGVEVPVSLVYHRKHFR-KGHNPLLVYGY 452
Query: 524 GSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACA 583
GSY D F+ SRLSLLDRGF++AI +RGGGELG+QWYE+GKFLKKKNTF D++
Sbjct: 453 GSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDAC 512
Query: 584 EYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPL 643
+ L+K Y + G SAGG+L+G +N RP+LF +A VPFVDV+TTMLD +IPL
Sbjct: 513 DALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPL 572
Query: 644 TTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKL 703
TT E+EEWG+P ++Y YMKSYSP DNV AQ YPH+LVT GL+D +V Y EPAK+VAKL
Sbjct: 573 TTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKL 632
Query: 704 REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744
RE+KTDD++LL ++ +GH KSGRF+ A Y FL+
Sbjct: 633 RELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLI 673
|
Length = 686 |
| >gnl|CDD|217275 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal beta-propeller domain | Back alignment and domain information |
|---|
Score = 356 bits (915), Expect = e-116
Identities = 133/435 (30%), Positives = 202/435 (46%), Gaps = 40/435 (9%)
Query: 52 PPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNM 111
PP + E GDV D Y WL DD PEVLA+++ EN Y E ++ K + + +
Sbjct: 1 PPTRRDETVVDEYHGDVVSDPYRWLEDDD--SPEVLAWVEAENKYTEDFLAQLKPLREKI 58
Query: 112 FAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPD 171
EL I +D+SAPFR+G YYYY R GK RR
Sbjct: 59 KEELTALINYDDISAPFRKGGYYYYFRNTGGKNQSVLYRRDA--------------GEGP 104
Query: 172 APPEHLILDENVKAEGRGFYSVGCFQ-VSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 230
E + LD N +E F SPD +L+AY+ G + YT+ D+ETG P+
Sbjct: 105 GETEEVFLDPNTLSEDGDFTVALDGYAFSPDGRLLAYSLSLSGSDWYTIRFRDVETGEPL 164
Query: 231 GKPLVGVTAS-VEWAGN-EALVYITMDEILR-----PDKAWLHKLEADQSNDICLYHEKD 283
L GV S + WA + + Y DE R K W H+L QS D+ ++ E D
Sbjct: 165 PDVLEGVKFSGIVWAPDNKGFFYSRYDEPERGSTNLNQKVWRHRLGTPQSQDVLVFEEPD 224
Query: 284 DIY-SLGLQASESKKFLFIASESKIT-RFVFYLDVSKPE--ELRVLTPRVVGVDTAASHR 339
+ + LG + S+ K+LFI+S S ++ LD+++ + LR + PR GV H
Sbjct: 225 EPFWYLGAERSDDGKYLFISSASGTDVNELYVLDLAQEKDGPLRKVVPRFDGVYYYVEHE 284
Query: 340 GNHFFITRRSDELFNSELLACPVDNTSE---TTVLIPHRESVKLQDIQLFIDHLAVYERE 396
G+ F+ +D N L+ +++ S V++ HRE V L++I +F ++L + R
Sbjct: 285 GDTFYF-LTNDGAPNFRLVRVDLNDPSPADWKDVIVEHREDVLLEEITVFGNYLVLSYRR 343
Query: 397 GGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPS 456
L ++ + L G + EF+ V S+ + + LR+ +SS TP +
Sbjct: 344 DALSRLQVFDLGGGGVLFE--------EFLPGVGSVSSASGEYDDDELRYSFSSFLTPGT 395
Query: 457 VYDYDMDMGISVLKK 471
+YD D+ G L K
Sbjct: 396 IYDLDLATGELELLK 410
|
This unusual 7-stranded beta-propeller domain protects the catalytic triad of prolyl oligopeptidase (see pfam00326), excluding larger peptides and proteins from proteolysis in the cytosol. Length = 412 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 238 bits (609), Expect = 7e-74
Identities = 100/219 (45%), Positives = 124/219 (56%), Gaps = 9/219 (4%)
Query: 532 PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591
P+F+ + L DRG++ A+A RG G GR W++ GK +N F DFIA AEYLI Y
Sbjct: 1 PSFSWNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGY 60
Query: 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW 651
++L I G S GG L GA LN RPDLFKAAVA VP VD LT M D + P T + EW
Sbjct: 61 VDPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDTS-PFTE-RYMEW 118
Query: 652 GDPWK-EEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 710
G+PW EE Y Y+ YSP DNVKA YP +L+ GL+D RV +E K VA L+
Sbjct: 119 GNPWDNEEGYRYLSPYSPYDNVKA--YPPLLLIHGLHDDRVPPAEALKLVAALQA--KGK 174
Query: 711 NILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749
N+LL GH R + E A FL++ L
Sbjct: 175 NVLL-LIFPDEGHGGGKPRN-KREEYARELAFLLKVLGG 211
|
Length = 212 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 237 bits (606), Expect = 2e-68
Identities = 197/712 (27%), Positives = 283/712 (39%), Gaps = 101/712 (14%)
Query: 71 DNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQ----EDVSA 126
D Y WL D E L +++ +N + ED+ A R+ + ED+
Sbjct: 4 DPYRWLED--LDSAEALKWVEAQNAKTREFLG-----EDSARAASDKRLLELWDYEDIPI 56
Query: 127 PFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDEN--VK 184
PF +G YY Y R ++ + +T + P +++D +
Sbjct: 57 PFERGGRYYNFWQ--DALYP----RGLYRR----TTLETYRS--AKPEWEVLIDVDALSA 104
Query: 185 AEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP----------- 233
G G V PD + Y+ G + D+ETG V +
Sbjct: 105 DLGDKVALGG-ASVLPDGTRLLYSLSIGGSDAGITREFDLETGEFVEEEGFKFPGISWLD 163
Query: 234 LVGVTASVEWAGNEALVYITMDEILRPDKAWL-HKLEADQSNDICLYHEKD-DIYSLGLQ 291
GV S W E T R K KL Q D+ + D D + L
Sbjct: 164 DDGVFVSRYWRPKE----KTPSGYPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLV 219
Query: 292 ASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD------------TAASHR 339
SE F ++ +L S +++ P VG + T A
Sbjct: 220 LSEDGDFFMLSL---------WLGTSGKGLIKLGLPDKVGYEWGKLVNTLRADWTFADVD 270
Query: 340 GNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHL-AVYEREGG 398
++ +DE IP E L+ + D L A
Sbjct: 271 YGLLYL--LTDEDLELG---------KVIAEFIP-EEEQSLEQVVTTKDKLVAGTLDNVS 318
Query: 399 LQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVY 458
+ E VE P S + ++S TP ++Y
Sbjct: 319 GRLEVYDLKGERIEE---------VELPPPGALGMGSADKDGDEVF-LAFTSFTTPSTLY 368
Query: 459 DYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPL 518
D+ G L+ I FD +NY E+ +A++ DGT+IP IV + K D +P
Sbjct: 369 RLDLFGG--ELEVIREQPVQFDADNYEVEQFFATSKDGTRIPYFIVRKG--AKKD-ENPT 423
Query: 519 LLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTD 578
LLY YG + I P F+ SR L+RG +F +A IRGGGE G +W++ G K+N F D
Sbjct: 424 LLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDD 483
Query: 579 FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD 638
FIA AE LIK + EKL I+G S GGLL+GA L RP+LF AAV VP +D ML
Sbjct: 484 FIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLD----MLR 539
Query: 639 PTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKA-QNYPHILVTAGLNDPRVMYSEP 696
+ + W E+G+P E ++ +YSP N+K Q YP L+T L+D RV +
Sbjct: 540 YHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKPGQKYPPTLITTSLHDDRVHPAHA 599
Query: 697 AKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748
KF AKL+E+ +L + E GH + E RE A FL+R L
Sbjct: 600 RKFAAKLQEVGAP---VLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648
|
Length = 648 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 5e-18
Identities = 113/562 (20%), Positives = 182/562 (32%), Gaps = 72/562 (12%)
Query: 199 SPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNEALVYITMDEI 257
SPD ++A+ T G + +Y++D+ + K GV A G+ + ++T +
Sbjct: 68 SPDGSVLAF-VSTDGGRVAQLYLVDVGGL--ITKTAFGVSDARWSPDGDR-IAFLTAEGA 123
Query: 258 LRPDK-------AWLHKLEADQSNDICLYH--EKDDIYSLGLQASESKKFLF-------- 300
+ D + LY + + LGL + F
Sbjct: 124 SKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVA 183
Query: 301 -IASESKITRFV--FYLDVSKPEELRVLTPRVVGVDTAA-----------SHRGNHFFIT 346
I + +V Y+ + EL LTP + A +
Sbjct: 184 SIRLDDDADPWVTNLYVLIEGNGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAE 243
Query: 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYR 406
L + EL D +S L D L +GG +R
Sbjct: 244 GDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDG-----DGLLFIATDGG-GSSPLFR 297
Query: 407 LPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466
+ +G ++ L G V D + YSS PP +Y YD
Sbjct: 298 VDDLGGGVEGLSGDDGG-----VPGFDVDGRKLA-----LAYSSPTEPPEIYLYDRGEEA 347
Query: 467 SVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSY 526
+ + L E ++DG I +Y+ PL++Y +G
Sbjct: 348 KLTSSNNSGLKKVKL--AEPEPVTYKSNDGETIH-GWLYKPPGFDPRKKYPLIVYIHGGP 404
Query: 527 EICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE--NGKFLKKKNTFTDFIACAE 584
+FN L G+ RG GR++ + G + D IA +
Sbjct: 405 SAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGV--DLEDLIAAVD 462
Query: 585 YLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLT 644
L+K E++ I G S GG + + FKAAVA VD L + T L
Sbjct: 463 ALVKLPLVDPERIGITGGSYGGYMTLLAA-TKTPRFKAAVAVAGGVDWLLYFGESTEGLR 521
Query: 645 TAEWEEWGDPWKEEFYFYMKSYSP---VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVA 701
E G P ++ + SP DN+K +L+ G D RV + + V
Sbjct: 522 FDPEENGGGPPEDR--EKYEDRSPIFYADNIKT----PLLLIHGEEDDRVPIEQAEQLVD 575
Query: 702 KLREMKTDDNILLFKCELGAGH 723
L+ +++F GH
Sbjct: 576 ALKRKGKPVELVVFP---DEGH 594
|
Length = 620 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 758 | |||
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 100.0 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 100.0 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 100.0 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 99.97 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.85 | |
| PRK10566 | 249 | esterase; Provisional | 99.83 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.82 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.81 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.8 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.8 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.79 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.78 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.78 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.78 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.77 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.76 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.75 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.75 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.74 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.74 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.73 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.73 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.73 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.72 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.72 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.72 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.72 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.72 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.71 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.71 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.7 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.68 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.68 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.66 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.66 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.66 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.65 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.63 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.63 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.62 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.62 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.62 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.6 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.59 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.56 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.55 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.55 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.54 | |
| PLN02511 | 388 | hydrolase | 99.54 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.54 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.53 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.51 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.49 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.49 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.48 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.48 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.48 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.47 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.44 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.44 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.43 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.42 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.42 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.41 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.4 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.4 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.4 | |
| PLN00021 | 313 | chlorophyllase | 99.4 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.39 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.39 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.38 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.38 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.37 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.37 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.37 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.37 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.36 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.34 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.34 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.32 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.32 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.32 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.31 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.31 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.31 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.3 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.3 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.28 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.27 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.27 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.26 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.26 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.26 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.25 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.25 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.25 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.24 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.22 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.21 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.2 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.2 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.2 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.15 | |
| PLN02578 | 354 | hydrolase | 99.15 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.15 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.13 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.13 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.13 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.12 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.12 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.1 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.05 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.05 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.0 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 98.99 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 98.96 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 98.95 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 98.95 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 98.95 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 98.95 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 98.94 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 98.86 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 98.86 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.79 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.78 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.77 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.72 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 98.67 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.66 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.66 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.62 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 98.58 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 98.57 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.57 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 98.56 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.55 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.53 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.52 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.51 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.51 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.5 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.5 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.5 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.46 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 98.46 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 98.45 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.45 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.45 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.45 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.44 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 98.43 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.42 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.41 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 98.38 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.34 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 98.33 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.33 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.31 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.29 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.29 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.28 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 98.26 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.26 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.26 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.25 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.25 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.24 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.23 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.23 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.22 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.22 | |
| PTZ00421 | 493 | coronin; Provisional | 98.19 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.18 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.17 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.16 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.15 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.14 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.14 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.13 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.12 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.1 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.09 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.09 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.08 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.07 | |
| PTZ00420 | 568 | coronin; Provisional | 98.07 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.06 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.05 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.01 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 98.01 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 98.0 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.98 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 97.93 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 97.93 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 97.91 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 97.9 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.89 | |
| PTZ00420 | 568 | coronin; Provisional | 97.88 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 97.86 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.86 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.85 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 97.84 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 97.82 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 97.8 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 97.8 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 97.79 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 97.79 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.76 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 97.75 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 97.73 | |
| PTZ00421 | 493 | coronin; Provisional | 97.73 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 97.68 | |
| PRK10115 | 686 | protease 2; Provisional | 97.66 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.64 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.64 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 97.63 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.62 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 97.62 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 97.61 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.6 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.6 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.59 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.58 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.55 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.54 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 97.52 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 97.47 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 97.43 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 97.42 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.38 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 97.36 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.36 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 97.36 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 97.31 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.29 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 97.27 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 97.25 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.22 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.22 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.17 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.16 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.12 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 97.09 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 97.08 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.05 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.02 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 96.99 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 96.98 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 96.97 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 96.96 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 96.92 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.9 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 96.85 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 96.84 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.84 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 96.83 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 96.82 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 96.8 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 96.79 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 96.78 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.75 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 96.75 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 96.74 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.73 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 96.72 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 96.71 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 96.7 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 96.68 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 96.68 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 96.64 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 96.62 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 96.62 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 96.57 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 96.54 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.53 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.53 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 96.52 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 96.51 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 96.48 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 96.38 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 96.37 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 96.34 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.31 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 96.28 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 96.28 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 96.27 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 96.26 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 96.26 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 96.25 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 96.23 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 96.1 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 96.06 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 96.06 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 96.04 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.02 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 95.98 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 95.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 95.96 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 95.89 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 95.87 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.85 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 95.83 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 95.82 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 95.82 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 95.76 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 95.76 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 95.75 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 95.74 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 95.73 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 95.69 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 95.67 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 95.51 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 95.51 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 95.5 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 95.47 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 95.41 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 95.37 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.37 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 95.3 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 95.19 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 95.17 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 95.14 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 95.01 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 94.99 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 94.99 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 94.95 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 94.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 94.93 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 94.87 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 94.78 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 94.75 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 94.68 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 94.67 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.6 | |
| PLN02209 | 437 | serine carboxypeptidase | 94.6 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 94.59 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 94.58 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.58 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 94.57 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 94.5 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 94.46 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 94.43 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 94.31 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.31 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 94.27 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 94.23 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 94.13 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 94.03 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 94.02 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 93.88 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 93.85 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 93.78 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 93.69 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 93.65 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 93.64 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 93.63 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.54 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 93.46 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 93.42 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 93.34 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 93.34 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 93.15 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 93.09 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 93.02 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 92.8 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.75 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 92.52 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 92.47 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 92.42 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 92.29 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 92.25 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 92.24 | |
| KOG2541 | 296 | consensus Palmitoyl protein thioesterase [Lipid tr | 92.18 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 91.94 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 91.82 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 91.79 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 91.74 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 91.71 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 91.68 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 91.68 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 91.66 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 91.62 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 91.47 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 91.35 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 91.27 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 91.11 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 90.55 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 90.54 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 90.49 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 90.19 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 90.16 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.02 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 89.98 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 89.81 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 89.81 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 89.71 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 89.42 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 89.22 | |
| PF04083 | 63 | Abhydro_lipase: Partial alpha/beta-hydrolase lipas | 88.83 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.82 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 88.5 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 88.43 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 88.31 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 88.22 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 88.21 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 88.15 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 87.98 | |
| PF02089 | 279 | Palm_thioest: Palmitoyl protein thioesterase; Inte | 87.79 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 87.65 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 87.59 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 87.27 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 87.26 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 87.18 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 87.14 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 86.88 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 86.75 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 86.64 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 86.58 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 86.54 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 85.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 85.86 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 85.65 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 85.39 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 85.35 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 85.07 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 85.06 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 84.63 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 84.33 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 84.26 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 83.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 83.93 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 83.61 | |
| PLN02633 | 314 | palmitoyl protein thioesterase family protein | 83.54 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 83.31 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 83.18 | |
| PLN02606 | 306 | palmitoyl-protein thioesterase | 82.97 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 82.69 | |
| COG2939 | 498 | Carboxypeptidase C (cathepsin A) [Amino acid trans | 82.03 | |
| PF06259 | 177 | Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR | 81.73 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 81.28 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 81.18 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 80.83 | |
| PLN02454 | 414 | triacylglycerol lipase | 80.08 |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-128 Score=1025.95 Aligned_cols=673 Identities=51% Similarity=0.887 Sum_probs=641.5
Q ss_pred CCCCCCcccceEEeecCCeeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHccccCCCCCCcEE
Q 004368 50 PSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFR 129 (758)
Q Consensus 50 ~~~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~~ev~~~l~~en~y~~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~~ 129 (758)
+.||+|+|+|++++.||+++.|+|+||||++|.+|+|++||+|||+|++++|+++++||++|++||++|+++++.|+|.+
T Consensus 4 p~pP~a~k~~~~~~~hg~~~~D~Y~WlRd~~~~~p~vl~yL~aEN~Yt~~~~a~~~~L~~~if~Ei~~Rik~dd~Svp~~ 83 (682)
T COG1770 4 PLPPIAKKVPTTRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQKKIFEEIKGRIKEDDLSVPYR 83 (682)
T ss_pred CCCCCccccceeeeecCceeecchHhhhCCcccChHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHhhhccCcCCCCccc
Confidence 35899999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred eCcEEEEEEecCCCeeEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecccccCCCCeEEEeeEEECCCCCEEEEEE
Q 004368 130 QGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAE 209 (758)
Q Consensus 130 ~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~ 209 (758)
+|+|+||+|...|++|+++||+...++ .+|++|||+|+++++++|++++.+.+|||+++|||+.
T Consensus 84 ~~~~~Yy~r~~~g~~y~~~~R~~~~g~----------------~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~ 147 (682)
T COG1770 84 KGPYEYYSRTEEGKEYPIYCRQPDEGG----------------EGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSV 147 (682)
T ss_pred cCCeeEEEEecCCCcceeEEeccCCCC----------------CceeEeecchhccCcccceeeeeeeeCCCCceEEEEE
Confidence 999999999999999999999765432 2589999999999999999999999999999999999
Q ss_pred eCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceee
Q 004368 210 DTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSL 288 (758)
Q Consensus 210 ~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~ 288 (758)
|..|+|+++|+++||++|+.+.+.+.++..+++|.+|+ ++||++.++..++.+||+|.+|+....+++||++.++.|++
T Consensus 148 D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~ 227 (682)
T COG1770 148 DVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFL 227 (682)
T ss_pred ecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEE
Confidence 99999999999999999999998888888889999999 99999999999999999999999888899999999999999
Q ss_pred EEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCc
Q 004368 289 GLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSE 367 (758)
Q Consensus 289 ~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~ 367 (758)
++..|.+.+||++..++..+++++++|.+.+. .++.+.++..+++|..+|.|+++|+.+|.++ .+++|++.++ .+..
T Consensus 228 ~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~g-knf~l~~ap~-~~~~ 305 (682)
T COG1770 228 SVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADG-KNFKLVRAPV-SADK 305 (682)
T ss_pred EeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEecCCC-cceEEEEccC-CCCh
Confidence 99999999999999999999999999999877 6788999999999999999999999999994 8999999998 4455
Q ss_pred cee--eecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccC-CCCcccCCcEE
Q 004368 368 TTV--LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSID-PSESVFSSRIL 444 (758)
Q Consensus 368 ~~~--l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~-~~~~~~d~~~l 444 (758)
..| +++++++..++++..++++|++.++++|.+++++.+... |+ ...|.|+++.++.. ..+..++++.+
T Consensus 306 ~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~-~~-------~~~i~f~~~ay~~~l~~~~e~~s~~l 377 (682)
T COG1770 306 SNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKT-GE-------ERGIAFDDEAYSAGLSGNPEFDSDRL 377 (682)
T ss_pred hcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCC-Cc-------eeeEEecchhhhccccCCCCCCCccE
Confidence 566 999999999999999999999999999999999998864 33 25689999888764 67788999999
Q ss_pred EEEEecCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecC
Q 004368 445 RFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYG 524 (758)
Q Consensus 445 ~~~~sS~~~P~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hG 524 (758)
+|.|+|+++|.++|.||+.++++++++.++++++|+++.|+++++|++..||++||++|+|+++. +.+++.||+|++||
T Consensus 378 R~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~-~~~g~~p~lLygYG 456 (682)
T COG1770 378 RYSYSSMTTPATLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDT-KLDGSAPLLLYGYG 456 (682)
T ss_pred EEEeecccccceeEEeeccCCcEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEeccc-CCCCCCcEEEEEec
Confidence 99999999999999999999999999999998889999999999999999999999999999997 78899999999999
Q ss_pred CCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeCh
Q 004368 525 SYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSA 604 (758)
Q Consensus 525 g~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~ 604 (758)
+||.++.+.|+..+.+|++||++++++|+||||+.|+.|+++|+..+|+|+|+||++|+++|+++|++++++|+++|+|+
T Consensus 457 aYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSA 536 (682)
T COG1770 457 AYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSA 536 (682)
T ss_pred cccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEec
Q 004368 605 GGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTA 684 (758)
Q Consensus 605 GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~ 684 (758)
||+|+++++++.|++|+++|+.+||+|++++|+++++|++..+|.|||||.+++.|++|++||||+||++..||++|+++
T Consensus 537 GGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e~y~yikSYSPYdNV~a~~YP~ilv~~ 616 (682)
T COG1770 537 GGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPEYYDYIKSYSPYDNVEAQPYPAILVTT 616 (682)
T ss_pred hhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCCcCCHHHHHHHhhcCchhccccCCCCceEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 685 GLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 685 G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
|.+|+||.+||+.|++++|++.+.+..+++|+++|++||++.+++.+.+++.|++++|+.+.++.
T Consensus 617 Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~SgRf~~lee~A~eYaF~l~~~~~ 681 (682)
T COG1770 617 GLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGASGRFQRLEEIAFEYAFLLKLAGT 681 (682)
T ss_pred cccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCCCCchHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999988764
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-109 Score=953.01 Aligned_cols=676 Identities=41% Similarity=0.695 Sum_probs=599.5
Q ss_pred CCCCcccceEEeecCCeeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHccccCCCCCCcEEeC
Q 004368 52 PPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQG 131 (758)
Q Consensus 52 ~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~~ev~~~l~~en~y~~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~~~g 131 (758)
||.|+|+|+++++||+++.|||+||||.+|++|||++||++||+||+++|++++++|++|++||++|++.++.++|.++|
T Consensus 2 pP~a~~~~~~~~~hg~~~~DpY~WLed~~r~~~~v~~~l~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g 81 (686)
T PRK10115 2 LPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLHQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKN 81 (686)
T ss_pred cCCCCCCCeeEEeCCCEeccCchHhhCCCCCCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhcccccCCCCEEEC
Confidence 78899999999999999999999999976679999999999999999999998899999999999999999999999999
Q ss_pred cEEEEEEecCCCeeEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeC
Q 004368 132 SYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDT 211 (758)
Q Consensus 132 ~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~ 211 (758)
+|+||.++..|++++++||+..... ..+.++||||+|+++++++++.++.+.|||||++|||+.|.
T Consensus 82 ~~~y~~~~~~g~~~~~~~r~~~~~~--------------~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~ 147 (686)
T PRK10115 82 GYRYRHIYEPGCEYAIYQRQSAFSE--------------EWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDF 147 (686)
T ss_pred CEEEEEEEcCCCccEEEEEecCCCC--------------CCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecC
Confidence 9999999999999999999864221 01358999999999888899999999999999999999999
Q ss_pred CCCeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCCC-CCCceEEEEEcCCCCCCcEEEeeecCCceeeE
Q 004368 212 KGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEI-LRPDKAWLHKLEADQSNDICLYHEKDDIYSLG 289 (758)
Q Consensus 212 ~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~~-~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~ 289 (758)
+|+|+++|+|+|+++|+.+.+.++++...++|++|| .|+|++.++. .++.+||+|++++++.++++++++.+..+++.
T Consensus 148 ~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~ 227 (686)
T PRK10115 148 LSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVS 227 (686)
T ss_pred CCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEE
Confidence 999999999999999987766677765569999999 8999998654 58899999999999888999999887777766
Q ss_pred EEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcc
Q 004368 290 LQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSET 368 (758)
Q Consensus 290 ~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~ 368 (758)
...+.|++++++.+.+..++++++++++... .++.+.++..+..+.+.+.++.||+.+|.+ +++++|+.+++.+++..
T Consensus 228 ~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~-~~~~~l~~~~~~~~~~~ 306 (686)
T PRK10115 228 LHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRH-GKNFGLYRTRVRDEQQW 306 (686)
T ss_pred EEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCC-CCCceEEEecCCCcccC
Confidence 6677799999998888888899998854322 356667777777777778889999999987 78999999998754444
Q ss_pred eeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccc-cCCCCcccCCcEEEEE
Q 004368 369 TVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYS-IDPSESVFSSRILRFH 447 (758)
Q Consensus 369 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~-i~~~~~~~d~~~l~~~ 447 (758)
+.++++..+..++++.+++++|++..+++|.+++++++++ ++.+ ..+.++++.+. ..+.+.+++++.++++
T Consensus 307 ~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~--~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (686)
T PRK10115 307 EELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRK--TREV------IGIAFDDPAYVTWIAYNPEPETSRLRYG 378 (686)
T ss_pred eEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCC--CCce------EEecCCCCceEeeecccCCCCCceEEEE
Confidence 4588887777899999999999999999999999888765 3322 23344333222 1234445778899999
Q ss_pred EecCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCc
Q 004368 448 YSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE 527 (758)
Q Consensus 448 ~sS~~~P~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~ 527 (758)
++|+++|+++|.+|+.+++.++++.... +.+++..+++++++++|.||++||++++++++. ..+++.|+||++||||+
T Consensus 379 ~ss~~~P~~~y~~d~~~~~~~~l~~~~~-~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~-~~~~~~P~ll~~hGg~~ 456 (686)
T PRK10115 379 YSSMTTPDTLFELDMDTGERRVLKQTEV-PGFDAANYRSEHLWITARDGVEVPVSLVYHRKH-FRKGHNPLLVYGYGSYG 456 (686)
T ss_pred EecCCCCCEEEEEECCCCcEEEEEecCC-CCcCccccEEEEEEEECCCCCEEEEEEEEECCC-CCCCCCCEEEEEECCCC
Confidence 9999999999999999887666554332 357778889999999999999999999998876 45678899999999999
Q ss_pred cCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHH
Q 004368 528 ICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGL 607 (758)
Q Consensus 528 ~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~ 607 (758)
.+..+.|+...+.|+++||+|+++|+|||||||++|+++|++.+|.++++|+++|++||+++|++|++||+|+|+|+||+
T Consensus 457 ~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~ 536 (686)
T PRK10115 457 ASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGM 536 (686)
T ss_pred CCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCC
Q 004368 608 LIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLN 687 (758)
Q Consensus 608 l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~ 687 (758)
|++++++++|++|+|+|+.+|++|++++|+++++|++..++.|||+|++++.+++|+++||++|++++++|+|||+||.+
T Consensus 537 l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~ 616 (686)
T PRK10115 537 LMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLH 616 (686)
T ss_pred HHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCchhccCccCCCceeEEecCC
Confidence 99999999999999999999999999999988899888888999999999999999999999999999999899999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 004368 688 DPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPS 752 (758)
Q Consensus 688 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 752 (758)
|+|||++|++||+++|++++++.++++|++++++||++..++...+++.|++++||.+.++.+-.
T Consensus 617 D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~~~~~~A~~~aFl~~~~~~~~~ 681 (686)
T PRK10115 617 DSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLIALAQGTLP 681 (686)
T ss_pred CCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 99999999999999999999999999999999999998899999999999999999999987643
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-108 Score=865.16 Aligned_cols=683 Identities=41% Similarity=0.667 Sum_probs=589.8
Q ss_pred CCCCCCCcc-cceEEeecCCeeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHccccCCCCCCc
Q 004368 49 LPSPPVAKK-VEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAP 127 (758)
Q Consensus 49 ~~~~P~a~~-~~~~~~~hG~~~~DpY~WLed~~~~~~ev~~~l~~en~y~~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p 127 (758)
+..||+++| +++.+++||++|.|||+||||++ +.++.+||++||.||+++|++++..+ +|..||+.|++++..++|
T Consensus 3 ~~~~P~~~k~e~~~~~~hg~~v~Dpy~Wl~d~d--~~~~~~fv~~en~~t~~vl~~~e~~~-kl~~em~~~i~ye~~~~p 79 (712)
T KOG2237|consen 3 PLQYPVARKDESVAEDFHGVTVEDPYRWLEDPD--DTEMKEFVEAENKYTDAVLEDTETKE-KLFSEMTKRIDYEIITPP 79 (712)
T ss_pred CCCCCCcccccchhhhcCCceecCcchhhcCCc--HHHHHHHHHHhhhhhHHHHhccHHHH-HHHHHhhhccCccccCCc
Confidence 344666665 66778999999999999999998 99999999999999999999996555 999999999999999999
Q ss_pred EEeCcEEEEEEecCCCeeEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecccccCCCCeEEEeeEEECCCCCEEEE
Q 004368 128 FRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAY 207 (758)
Q Consensus 128 ~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy 207 (758)
.++|+|+||.++.++++|+++||+....+ +..+.|.. ...+..+|+||.|++++.++|+..+-...|||.++|||
T Consensus 80 ~r~G~~yyY~~n~~lkq~vl~~rr~~~~e--~~~~ld~~---~~~dd~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~ 154 (712)
T KOG2237|consen 80 LRWGPWYYYFYNTGLKQYVLYCRRLLEKE--EEVFLDPN---ALGDDGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAY 154 (712)
T ss_pred cccCCEEEEEEcCCceehhHHHHhhhhcc--cceecCCc---cCCCCceEEechhhhhhcCCceEEeecccCCCceEEEE
Confidence 99999999999999999999999876322 12222222 22345689999999999999999988889999999999
Q ss_pred EEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEec-CC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCc
Q 004368 208 AEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAG-NE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDI 285 (758)
Q Consensus 208 ~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wsp-Dg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~ 285 (758)
..+..|+|.+++ |.++...++.-.......+..+|.. || .|.|.+.++.+++++||+|.+|+.+.+|++++++.++.
T Consensus 155 ~~~~~~~e~~~~-v~~~~~~~~~~~~~~~g~~y~~w~~~dg~~l~~~t~~~~~r~hkvy~h~~Gtdq~~Dvl~~~e~d~~ 233 (712)
T KOG2237|consen 155 TKDTEGKELFTV-VIDVKFSGPVWTHDGKGVSYLAWAKQDGEDLLYGTEDENNRPHKVYYHTLGTDQSEDVLLYEEKDEP 233 (712)
T ss_pred EEcCCCCcccee-eeeeccCCceeeccCCceEeeeecccCCceeeeeeeccccCcceEEEEecccCCCcceEEEecCCCC
Confidence 999999999999 9999988877543333455689987 88 78999999999999999999999999999999999988
Q ss_pred eeeEEEEcCCCcEEEEEecCCcc---eEEEEEeCCCCC-ceEE-eeccccceeeE------EeecCCEEEEEEcCCCCCC
Q 004368 286 YSLGLQASESKKFLFIASESKIT---RFVFYLDVSKPE-ELRV-LTPRVVGVDTA------ASHRGNHFFITRRSDELFN 354 (758)
Q Consensus 286 ~~~~~~~S~Dg~~l~~~s~~~~~---~~l~~~d~~~~~-~~~~-l~~~~~~~~~~------~s~dg~~l~~~s~~~~~~~ 354 (758)
.++..+-+.|+++..+.+.+.+. +.+|.+|+.... ++.. +.++..++.++ +..++..++|.+|.+ +++
T Consensus 234 ~~vf~~~~kD~~~~~i~si~~t~s~~~~vf~~d~~~~~~gl~~~~~~~v~~v~~f~eh~~fi~~~~t~~~~~tn~~-~p~ 312 (712)
T KOG2237|consen 234 KHVFISETKDSGFYTINSISETCSPVNKVFLCDLSSPSDGLELLILPRVKGVDCFVEHYDFITNEGTEFYFLTNKD-APN 312 (712)
T ss_pred eEEEEEEEecCceEEEEEeeccCCccceEEEEecccccCCcchheeeccchhhhhhhhhhheeccCcceeeeccCC-CCc
Confidence 88777778888887777766554 499999997655 4553 66776666544 445568899999998 899
Q ss_pred cEEEEEeCCCCCccee--eecCCCCceeeeEEEeCCEEEEEEEeCCeeE-EEEEEcCCCCCccccccCCceeeccCcccc
Q 004368 355 SELLACPVDNTSETTV--LIPHRESVKLQDIQLFIDHLAVYEREGGLQK-ITTYRLPAVGEPLKSLQGGKSVEFIDPVYS 431 (758)
Q Consensus 355 ~~L~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~ 431 (758)
+.+.++++..+....| ++.+.+...+++++..++.+++......... +.+..+- +|. ....||.+.++
T Consensus 313 y~l~r~~~~~~~~~~W~~v~~e~~~~vl~~~~~~~~~~ll~~~~~~l~~i~q~~~~l-~g~--------~~~~fpLpv~s 383 (712)
T KOG2237|consen 313 YYLLRIDVKEPEESKWETVFAEHEKDVLEDVDMVNDNLLLVCYMSDLKHILQVRDLL-DGS--------LLRSFPLPVGS 383 (712)
T ss_pred eeEEeeeccCccccccceeecccchhhhhhhhhhcCceEEEEEecCchhhccccccc-cCc--------eeeeecCCCCc
Confidence 9999999987755666 7777777788888888776655544443332 2222222 122 44567778888
Q ss_pred cCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEE---EEEEeeecCCCCCCCceeEEEEeeCCCCeEEEEEEEeecc
Q 004368 432 IDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV---LKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKN 508 (758)
Q Consensus 432 i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~ 508 (758)
+.+...++++++++|.++|+.+|+.||.||+..++.+ ..+...+.++|+.+.|++++++++|+||++||++|+|.++
T Consensus 384 v~~~~g~~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~ 463 (712)
T KOG2237|consen 384 VSGTSGDFKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKD 463 (712)
T ss_pred ccccccCCCCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEech
Confidence 8777779999999999999999999999999998432 2223344578999999999999999999999999999888
Q ss_pred ccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHH
Q 004368 509 LVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK 588 (758)
Q Consensus 509 ~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 588 (758)
. +.+++.|++|++||||+.+..+.|......|+++|++.+++|+|||||+|.+||+.|+..+|+|+|+||++|++||++
T Consensus 464 ~-k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve 542 (712)
T KOG2237|consen 464 I-KLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVE 542 (712)
T ss_pred h-hhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHH
Confidence 7 888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCc
Q 004368 589 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSP 668 (758)
Q Consensus 589 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp 668 (758)
+|++.|+++++.|+|+||+|++++++++||+|+|+|+.+||+||++++.++.+|++..+|.|||+|++.+.+-+++.|||
T Consensus 543 ~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~~i~~y~p 622 (712)
T KOG2237|consen 543 NGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLIKISPYSP 622 (712)
T ss_pred cCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhheecccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888999999
Q ss_pred ccccCCCC-CCeEEEeccCCCCCCCChHHHHHHHHHHhcCCC----CceEEEEecCCCCCCCCCChHHHHHHHHHHHHHH
Q 004368 669 VDNVKAQN-YPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD----DNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 743 (758)
Q Consensus 669 ~~~i~~~~-~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~----~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 743 (758)
++|+++.. ||.|||+++.||+||+++|+.||+++||++... .++++++++.++||+...++...+++.++.++||
T Consensus 623 v~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaFl 702 (712)
T KOG2237|consen 623 VDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAFL 702 (712)
T ss_pred cCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHHHHHHHHHHH
Confidence 99999885 999999999999999999999999999997533 3679999999999999999999999999999999
Q ss_pred HHhcCCCC
Q 004368 744 MRALSMLP 751 (758)
Q Consensus 744 ~~~l~~~~ 751 (758)
.+.++..+
T Consensus 703 ~K~~~~~~ 710 (712)
T KOG2237|consen 703 AKMLNSDW 710 (712)
T ss_pred HHHhcCcc
Confidence 99998765
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-81 Score=655.40 Aligned_cols=629 Identities=29% Similarity=0.396 Sum_probs=492.3
Q ss_pred eecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHccccCCCCCCcEEeCcEEEEEEecCCCeeEEE
Q 004368 69 RVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQH 148 (758)
Q Consensus 69 ~~DpY~WLed~~~~~~ev~~~l~~en~y~~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~ 148 (758)
..|||+||||.+ ++|+++|+++||+-|..+|... +-++.+.+++.+.+..++..+|...|+++|.-.+.......++
T Consensus 2 ~~DPy~wlEd~~--~~eal~wv~~~N~~t~~~L~~~-~~~a~~~~~~~~l~d~~~~~~~~~~~~~~ynFw~D~~~p~Glw 78 (648)
T COG1505 2 VPDPYRWLEDLD--SAEALKWVEAQNAKTREFLGED-SARAASDKRLLELWDYEDIPIPFERGGRYYNFWQDALYPRGLY 78 (648)
T ss_pred CCCcchhhhcCC--cHHHHHHHHhhhhHHHHHhhcc-hhhHHHHHHHHHHhhccccCcceeccceeEEeeccccCcceeE
Confidence 469999999977 9999999999999999999999 6688899999999998889999999998887666554444444
Q ss_pred EEEecCCCCCCCCccccCCCCCCCCCceEEeecccccCCCC-eEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCC
Q 004368 149 CRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRG-FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG 227 (758)
Q Consensus 149 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~~~~~~-~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g 227 (758)
.|....+ .+ ...+..+||+|.+++++..| .+...+.+.+||+++++|+.+.+|++...++++|+++|
T Consensus 79 r~ttl~s----------yr--s~~p~WevLiD~d~Ls~~~g~~v~~~Gas~~~~~~R~l~s~S~gG~D~~~~re~Dlet~ 146 (648)
T COG1505 79 RRTTLET----------YR--SAKPEWEVLIDVDALSADLGDKVALGGASVLPDGTRLLYSLSIGGSDAGITREFDLETG 146 (648)
T ss_pred Eeeccee----------ec--ccCCCceeecCHHHHhhhcCCcEEEccceeCCCCCEEEEEecCCCCcceEEEEEEeccc
Confidence 3332211 11 12346799999999986543 66778888899999999999999999999999999999
Q ss_pred ceeeccccCcceeEEEecCCeEEEEEeCC------CCCC---ceEEEEEcCCCCCCcEEEeeecC-CceeeEEEEcCCCc
Q 004368 228 TPVGKPLVGVTASVEWAGNEALVYITMDE------ILRP---DKAWLHKLEADQSNDICLYHEKD-DIYSLGLQASESKK 297 (758)
Q Consensus 228 ~~~~~~~~~~~~~~~wspDg~l~y~~~~~------~~~~---~~v~~~~l~~~~~~~~~v~~~~~-~~~~~~~~~S~Dg~ 297 (758)
+.+... .-...++.|.+++.++|.+... ...+ ..++++++..++..++.++...+ ......+..+.|++
T Consensus 147 ~fv~~~-~f~~~~~~wld~d~~~~~~~~~~~e~T~sGy~~~~~~~krg~~f~~~~~dv~V~a~~~~~~~~~~~~~~~~~~ 225 (648)
T COG1505 147 EFVEEE-GFKFPGISWLDDDGVFVSRYWRPKEKTPSGYPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGD 225 (648)
T ss_pred ccccCC-CccccceEEecCCCEEEecccCCcccCccCCchHhhhhhhcccccCCCCceEEecccccCCccceEEEeeccc
Confidence 877643 1123448999888676666533 1122 24567778888888888876543 11223445666666
Q ss_pred EEEEEecCC--cceEEEEEeCCCC--CceEEe-e-ccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceee
Q 004368 298 FLFIASESK--ITRFVFYLDVSKP--EELRVL-T-PRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVL 371 (758)
Q Consensus 298 ~l~~~s~~~--~~~~l~~~d~~~~--~~~~~l-~-~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l 371 (758)
+++....-. ....++ +++-+. .....| . .+.+. . ....+.+.+++.+... ... +....+
T Consensus 226 ~f~~~~~~~~~~~~~~~-l~~p~~~~~~~~~l~~~~r~dw-~-~~~~~~g~l~l~~~e~-~~~-----------g~~~a~ 290 (648)
T COG1505 226 FFMLSLWLGTSGKGLIK-LGLPDKVGYEWGKLVNTLRADW-T-FADVDYGLLYLLTDED-LEL-----------GKVIAE 290 (648)
T ss_pred hhhheeeEeccCCCcee-ccCCccccceeeeeeEeecccc-c-ccCcccceEEEEehhc-ccc-----------CceeEE
Confidence 654332211 111222 222111 001111 0 00000 0 0111222333333322 111 111124
Q ss_pred ecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecC
Q 004368 372 IPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSL 451 (758)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~ 451 (758)
+.+.+...++.+....+++++...+|...++.++.+. |.. .+++.+|.+. .+...+.+.+++.+.+.++|+
T Consensus 291 ~~P~~~~~le~v~tt~~~~va~~l~nv~~~l~v~~~~--g~~------~~~v~l~~~g-a~~~~~~~~~g~ev~l~~t~F 361 (648)
T COG1505 291 FIPEEEQSLEQVVTTKDKLVAGTLDNVSGRLEVYDLK--GER------IEEVELPPPG-ALGMGSADKDGDEVFLAFTSF 361 (648)
T ss_pred ecCCcccceeeeEEEcCeEEeeeehhccceEEEeccC--ceE------eeecccCCcc-ceeeccCCCCCcEEEEEeecc
Confidence 4455566899999999999999999998899998876 443 2567777654 444346678899999999999
Q ss_pred CCCCEEEEEECCCCcEEEEEEeeecCCCCCCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC
Q 004368 452 RTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND 531 (758)
Q Consensus 452 ~~P~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~ 531 (758)
++|+++|+++..+++.++++..+ ..|+++++++++.+.+|.||++||.+|++ |+. +.+ ++|++|+.|||++.+..
T Consensus 362 ~tP~~~~r~~~~~~eLe~ik~~p--~~FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~-~~d-~~pTll~aYGGF~vslt 436 (648)
T COG1505 362 TTPSTLYRLDLFGGELEVIREQP--VQFDADNYEVEQFFATSKDGTRIPYFIVR-KGA-KKD-ENPTLLYAYGGFNISLT 436 (648)
T ss_pred cCCCceEEEecCCceehhhhhcc--CCcCccCceEEEEEEEcCCCccccEEEEe-cCC-cCC-CCceEEEeccccccccC
Confidence 99999999999999866655443 48999999999999999999999999999 886 666 89999999999999999
Q ss_pred CCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHH
Q 004368 532 PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGA 611 (758)
Q Consensus 532 ~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~ 611 (758)
|.|+..+..|+++|.+++++|+|||||||.+||+++++.++++.|+|+.|+++.|+++|++.|++|||.|+|+||+|+++
T Consensus 437 P~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~ 516 (648)
T COG1505 437 PRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGA 516 (648)
T ss_pred CccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCC-CCCCeEEEeccCCCCC
Q 004368 612 VLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKA-QNYPHILVTAGLNDPR 690 (758)
Q Consensus 612 ~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~-~~~P~~Li~~G~~D~~ 690 (758)
+++|+|++|.|+||.+|++||+++. .++....+..|||+|.+|+.+..|.+||||+|++. .+|||+||++|.+|+|
T Consensus 517 alTQrPelfgA~v~evPllDMlRYh---~l~aG~sW~~EYG~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LITTs~~DDR 593 (648)
T COG1505 517 ALTQRPELFGAAVCEVPLLDMLRYH---LLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKPGQKYPPTLITTSLHDDR 593 (648)
T ss_pred eeccChhhhCceeeccchhhhhhhc---ccccchhhHhhcCCCCCHHHHHHHHhcCchhcCCccccCCCeEEEccccccc
Confidence 9999999999999999999999986 33444444589999999999999999999999998 4999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 691 VMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 691 V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
|.|+|++||+++|++.+.+ ++|.++-++||++..+..+..++.++.++||.+.|+
T Consensus 594 VHPaHarKfaa~L~e~~~p---v~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 594 VHPAHARKFAAKLQEVGAP---VLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred ccchHHHHHHHHHHhcCCc---eEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999944 567777899999999998889999999999999875
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=502.92 Aligned_cols=396 Identities=37% Similarity=0.625 Sum_probs=327.2
Q ss_pred CCCCcccceEEeecCCeeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHccccCCCCCCcEEeC
Q 004368 52 PPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQG 131 (758)
Q Consensus 52 ~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~~ev~~~l~~en~y~~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~~~g 131 (758)
||++++.++++++||+++.|||+||||.+ ||+|++||++||+||+++|+++++++++|++||++++..+..++|.+.|
T Consensus 1 P~~~~~~~~~~~~hg~~~~DpY~WLed~~--~~~v~~~~~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g 78 (414)
T PF02897_consen 1 PPTARKPPVVETLHGVTITDPYRWLEDDD--SPEVLAWLKAENAYTEAYLAQLKPLREKLYEELKARINEDRESVPVRRG 78 (414)
T ss_dssp S-TTS-TTSEEEETTEEEE-TTGGGGSTT--SHHHHHHHHHHHHHHHHHHHTSHTCHHHHHHHHHHHCSSSEE---EEET
T ss_pred CCCCCCCCeeeecCCCEeecCchhhcCCC--CHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHhhccCCCccccEEEC
Confidence 57777777999999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecCCCeeEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeC
Q 004368 132 SYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDT 211 (758)
Q Consensus 132 ~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~ 211 (758)
+|+||.+..++++++++||+..... +...++||||+|+++++.+++.++.+.+||||++|||+.+.
T Consensus 79 ~~~y~~~~~~~~~~~~~~r~~~~~~--------------~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~ 144 (414)
T PF02897_consen 79 GYYYYSRNQGGKNYPVLYRRKTDEE--------------DGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSD 144 (414)
T ss_dssp TEEEEEEE-SS-SS-EEEEEETTS---------------TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEE
T ss_pred CeEEEEEEcCCCceEEEEEEecccC--------------CCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecC
Confidence 9999999999999999999876410 01235999999999987668888899999999999999999
Q ss_pred CCCeEEEEEEEECCCCceeeccccCcce-eEEEecCC-eEEEEEeCCCCC------CceEEEEEcCCCCCCcEEEeeecC
Q 004368 212 KGDEIYTVYVIDIETGTPVGKPLVGVTA-SVEWAGNE-ALVYITMDEILR------PDKAWLHKLEADQSNDICLYHEKD 283 (758)
Q Consensus 212 ~G~e~~~l~v~dl~~g~~~~~~~~~~~~-~~~wspDg-~l~y~~~~~~~~------~~~v~~~~l~~~~~~~~~v~~~~~ 283 (758)
+|+|.++|+|+|+++|+.+.+.+.++.. +++|++|| .|||++.+...+ +++||+|++|++..++++||++.+
T Consensus 145 ~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~ 224 (414)
T PF02897_consen 145 GGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPD 224 (414)
T ss_dssp TTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TT
T ss_pred CCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecC
Confidence 9999999999999999988877666643 39999999 899999988767 999999999999988899999988
Q ss_pred Cce-eeEEEEcCCCcEEEEEecCCcc-eEEEEEeCCCC---C-ceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEE
Q 004368 284 DIY-SLGLQASESKKFLFIASESKIT-RFVFYLDVSKP---E-ELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSEL 357 (758)
Q Consensus 284 ~~~-~~~~~~S~Dg~~l~~~s~~~~~-~~l~~~d~~~~---~-~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L 357 (758)
..+ ++++.+|+||++|++.+.+..+ +++|++|+.++ . .++++.++..+..+.+.+.|+.||+.+|.+ +++++|
T Consensus 225 ~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~-a~~~~l 303 (414)
T PF02897_consen 225 EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDD-APNGRL 303 (414)
T ss_dssp CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT--TT-EE
T ss_pred CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCC-CCCcEE
Confidence 887 8889999999999999988777 99999999875 2 588898888888888888899999999987 899999
Q ss_pred EEEeCCCCCcce---eeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCC
Q 004368 358 LACPVDNTSETT---VLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDP 434 (758)
Q Consensus 358 ~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~ 434 (758)
++++++.+.... .++++.++..+.+++.++++|++..++++.++|.++++.. +.. ...+.+|.. +++.+
T Consensus 304 ~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~-~~~------~~~~~~p~~-g~v~~ 375 (414)
T PF02897_consen 304 VAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDD-GKE------SREIPLPEA-GSVSG 375 (414)
T ss_dssp EEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEE------EEEEESSSS-SEEEE
T ss_pred EEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCC-CcE------EeeecCCcc-eEEec
Confidence 999998865422 3777777788999999999999999999999999999872 221 134555543 34556
Q ss_pred CCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEEEEE
Q 004368 435 SESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKI 472 (758)
Q Consensus 435 ~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~~~~ 472 (758)
.+.+++++.++|.++|+++|+++|.||+.+++.++++.
T Consensus 376 ~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 376 VSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 77788999999999999999999999999999777653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=410.62 Aligned_cols=525 Identities=19% Similarity=0.215 Sum_probs=351.6
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCC----CCC----CceE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDE----ILR----PDKA 263 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~----~~~----~~~v 263 (758)
+..+.|||||+.+++.... +....++|+.+.+ | ... ..........|+|+| .+.+..... ... ..++
T Consensus 62 ~~~~~~spdg~~~~~~~~~-~~~~~~l~l~~~~-g-~~~-~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (620)
T COG1506 62 VSELRWSPDGSVLAFVSTD-GGRVAQLYLVDVG-G-LIT-KTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRL 137 (620)
T ss_pred ccccccCCCCCEEEEEecc-CCCcceEEEEecC-C-cee-eeecccccceeCCCCCeEEEEecccccccCCceeeeeccc
Confidence 4567899999999999943 3347899999998 5 222 122224558999999 777732211 010 0011
Q ss_pred EEEEcCCC-CCCcEEEeeec--------CCceeeEEEEcCCCcEEEEEecCCc----ceEEEEEeCCCCCceEEeecccc
Q 004368 264 WLHKLEAD-QSNDICLYHEK--------DDIYSLGLQASESKKFLFIASESKI----TRFVFYLDVSKPEELRVLTPRVV 330 (758)
Q Consensus 264 ~~~~l~~~-~~~~~~v~~~~--------~~~~~~~~~~S~Dg~~l~~~s~~~~----~~~l~~~d~~~~~~~~~l~~~~~ 330 (758)
.....+.+ ......+.+.. .........+..+++.++....... ....++....++. +..+++...
T Consensus 138 ~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 216 (620)
T COG1506 138 PVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE-LESLTPGEG 216 (620)
T ss_pred ceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc-eEEEcCCCc
Confidence 11111211 11111111111 1111224445556666655443322 1233333333443 555655544
Q ss_pred cee-eEEeecCCEEEEEEcCCC---CCCcEEEEEeCCCCCcceeeecCCC----CceeeeEEEeCCEEEEEEEe-CCeeE
Q 004368 331 GVD-TAASHRGNHFFITRRSDE---LFNSELLACPVDNTSETTVLIPHRE----SVKLQDIQLFIDHLAVYERE-GGLQK 401 (758)
Q Consensus 331 ~~~-~~~s~dg~~l~~~s~~~~---~~~~~L~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~~-~g~~~ 401 (758)
... ..+.++|+.+++..+... .....++..+.+...... ...... ...+. ....++.++++... .|...
T Consensus 217 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 294 (620)
T COG1506 217 SISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDG-DLSSGDDTRGAWAVE-GGLDGDGLLFIATDGGGSSP 294 (620)
T ss_pred eeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccce-eeccCCcccCcHHhc-cccCCCcEEEEEecCCCceE
Confidence 433 348899998888877652 223445554411111111 111110 00111 11445666666665 44333
Q ss_pred EEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEEEEEeeecCCC-C
Q 004368 402 ITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGF-D 480 (758)
Q Consensus 402 l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~~~~~~~~~~~-~ 480 (758)
++.....+. ...+ +..+.+.+..+ +.+++.+++.++++..|+++|.++. ..+..++.... ... .
T Consensus 295 --l~~~~~~~~-------~~~~-~~~~~~~v~~f--~~~~~~~~~~~s~~~~p~~i~~~~~-~~~~~~~~~~~--~~~~~ 359 (620)
T COG1506 295 --LFRVDDLGG-------GVEG-LSGDDGGVPGF--DVDGRKLALAYSSPTEPPEIYLYDR-GEEAKLTSSNN--SGLKK 359 (620)
T ss_pred --EEEEeccCC-------ceee-ecCCCceEEEE--eeCCCEEEEEecCCCCccceEEEcC-CCceEEeeccc--ccccc
Confidence 333332111 0111 11111223323 3488999999999999999999987 33322222111 111 1
Q ss_pred CCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCc
Q 004368 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG 560 (758)
Q Consensus 481 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G 560 (758)
......+.+++++.||.+|+++++.|++. .+.+++|+||++||||.......|....+.|+++||+|+.+|+||+++||
T Consensus 360 ~~~~~~e~~~~~~~dG~~i~~~l~~P~~~-~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG 438 (620)
T COG1506 360 VKLAEPEPVTYKSNDGETIHGWLYKPPGF-DPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYG 438 (620)
T ss_pred cccCCceEEEEEcCCCCEEEEEEecCCCC-CCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccH
Confidence 23446899999999999999999999998 77777999999999998888888999999999999999999999999999
Q ss_pred hhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCC
Q 004368 561 RQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPT 640 (758)
Q Consensus 561 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~ 640 (758)
++|.++....++...++|+++++++|++++++|++||+|+|+||||||+++++++.| +|+|+++..+.+|++.++...+
T Consensus 439 ~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~ 517 (620)
T COG1506 439 REFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGEST 517 (620)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccc
Confidence 999999999999999999999999999999999999999999999999999999987 8999999999888888766555
Q ss_pred CCCChhhhhccCCCC-CHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecC
Q 004368 641 IPLTTAEWEEWGDPW-KEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCEL 719 (758)
Q Consensus 641 ~~~~~~~~~e~g~p~-~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 719 (758)
..+........+.+. +. +.+...||+.++.++++| +|++||++|.|||..|+++|+++|+..|+++++++|+
T Consensus 518 ~~~~~~~~~~~~~~~~~~---~~~~~~sp~~~~~~i~~P-~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p--- 590 (620)
T COG1506 518 EGLRFDPEENGGGPPEDR---EKYEDRSPIFYADNIKTP-LLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFP--- 590 (620)
T ss_pred hhhcCCHHHhCCCcccCh---HHHHhcChhhhhcccCCC-EEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeC---
Confidence 543322212223332 33 345789999999999999 9999999999999999999999999999999999998
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 720 GAGHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 720 ~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
+++|..... ....+.....++||.++++.
T Consensus 591 ~e~H~~~~~-~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 591 DEGHGFSRP-ENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred CCCcCCCCc-hhHHHHHHHHHHHHHHHhcC
Confidence 999987652 33444555578999999874
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=279.38 Aligned_cols=330 Identities=20% Similarity=0.246 Sum_probs=244.2
Q ss_pred EEEEEEeCC--eeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 390 LAVYEREGG--LQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 390 l~~~~~~~g--~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
++|....++ ...+++..+...|+ + ..+.+++++- +...+.+-+.++..++|-..|+.+..|.+..++-
T Consensus 518 VYf~gt~d~PlE~hLyvvsye~~g~-~--------~rlt~~g~sh-~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~ 587 (867)
T KOG2281|consen 518 VYFVGTKDTPLEHHLYVVSYENPGE-I--------ARLTEPGYSH-SCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPEN 587 (867)
T ss_pred EEEEccCCCCceeeEEEEEEecCCc-e--------eeccCCCccc-chhhhhhhhhHhhhhhcCCCCceEEEEeccCCcc
Confidence 444555555 33566666653343 2 2223333332 1122333334666778999999999998877653
Q ss_pred EEEEEe-e---e--cCCCCCCCcee-EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCC-CCCCCh---
Q 004368 468 VLKKIE-T---V--LGGFDTNNYFT-ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN-DPAFNS--- 536 (758)
Q Consensus 468 ~~~~~~-~---~--~~~~~~~~~~~-~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~--- 536 (758)
..+..+ . + .....+.+|.. +-+.+.+..|..+.+.++.|.++ ++++++|+++++|||++.+. ...|..
T Consensus 588 ~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~-~pgkkYptvl~VYGGP~VQlVnnsfkgi~y 666 (867)
T KOG2281|consen 588 DPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNF-QPGKKYPTVLNVYGGPGVQLVNNSFKGIQY 666 (867)
T ss_pred CcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccC-CCCCCCceEEEEcCCCceEEeeccccceeh
Confidence 222211 0 0 11223446654 66777888899999999999888 89999999999999999763 233443
Q ss_pred -HHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcC-CCCCCcEEEEEeChhHHHHHHHHh
Q 004368 537 -SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC-YCTKEKLCIEGRSAGGLLIGAVLN 614 (758)
Q Consensus 537 -~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~ 614 (758)
....|+++||+|+.+|.||+--.|.+|-...++..++.+++|.+.++++|+++. ++|.+||+|.|+||||||++..++
T Consensus 667 lR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~ 746 (867)
T KOG2281|consen 667 LRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLA 746 (867)
T ss_pred hhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhh
Confidence 236889999999999999999999999999999999999999999999999985 999999999999999999999999
Q ss_pred hCCCceeEEEEcCCccchhhccCCCCCCCChhhhhcc-CCCC-CHHHHHHHHhcCcccccCCC-CCC-eEEEeccCCCCC
Q 004368 615 MRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW-GDPW-KEEFYFYMKSYSPVDNVKAQ-NYP-HILVTAGLNDPR 690 (758)
Q Consensus 615 ~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~-g~p~-~~~~~~~l~~~sp~~~i~~~-~~P-~~Li~~G~~D~~ 690 (758)
++|+.|++||+.+|++||.-+.. .++ +.| |-|+ +++.| .+-|-..++.+. +-| .+|++||.-|.+
T Consensus 747 ~~P~IfrvAIAGapVT~W~~YDT----gYT----ERYMg~P~~nE~gY---~agSV~~~VeklpdepnRLlLvHGliDEN 815 (867)
T KOG2281|consen 747 QYPNIFRVAIAGAPVTDWRLYDT----GYT----ERYMGYPDNNEHGY---GAGSVAGHVEKLPDEPNRLLLVHGLIDEN 815 (867)
T ss_pred cCcceeeEEeccCcceeeeeecc----cch----hhhcCCCccchhcc---cchhHHHHHhhCCCCCceEEEEecccccc
Confidence 99999999999999999976531 122 233 7773 44444 344667777776 344 399999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 691 VMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 691 V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
|.+.|...++.+|.++|++.++++|| ++-|+.........-+ +..+.|+.+
T Consensus 816 VHF~Hts~Lvs~lvkagKpyeL~IfP---~ERHsiR~~es~~~yE-~rll~FlQ~ 866 (867)
T KOG2281|consen 816 VHFAHTSRLVSALVKAGKPYELQIFP---NERHSIRNPESGIYYE-ARLLHFLQE 866 (867)
T ss_pred hhhhhHHHHHHHHHhCCCceEEEEcc---ccccccCCCccchhHH-HHHHHHHhh
Confidence 99999999999999999999999998 8999875443332222 446778765
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=274.78 Aligned_cols=211 Identities=33% Similarity=0.480 Sum_probs=172.6
Q ss_pred CCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHH
Q 004368 532 PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGA 611 (758)
Q Consensus 532 ~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~ 611 (758)
|+|+...+.|+++||+|+.+|+||++++|.+|+..+....+...++|+++++++|++++.+|++||+|+|+|+||++++.
T Consensus 1 ~~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~ 80 (213)
T PF00326_consen 1 PSFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALL 80 (213)
T ss_dssp ---SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHH
T ss_pred CeeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccch
Confidence 46888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCC-CCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCC
Q 004368 612 VLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPR 690 (758)
Q Consensus 612 ~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p-~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~ 690 (758)
+++++|++|+|+|+.+|++|+..+...... +...++.++|.+ ..++.|+.+..++++.++. .+.| +||+||++|.+
T Consensus 81 ~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~P-~li~hG~~D~~ 157 (213)
T PF00326_consen 81 AATQHPDRFKAAVAGAGVSDLFSYYGTTDI-YTKAEYLEYGDPWDNPEFYRELSPISPADNVQ-IKPP-VLIIHGENDPR 157 (213)
T ss_dssp HHHHTCCGSSEEEEESE-SSTTCSBHHTCC-HHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCG-GGSE-EEEEEETTBSS
T ss_pred hhcccceeeeeeeccceecchhcccccccc-cccccccccCccchhhhhhhhhcccccccccc-CCCC-EEEEccCCCCc
Confidence 999999999999999999998876544333 222245677887 5666665555555554433 4455 99999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 691 VMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 691 V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
||+.++.+|+++|+++|+++++++++ ++||+........ +....+++||.++|+.
T Consensus 158 Vp~~~s~~~~~~L~~~g~~~~~~~~p---~~gH~~~~~~~~~-~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 158 VPPSQSLRLYNALRKAGKPVELLIFP---GEGHGFGNPENRR-DWYERILDFFDKYLKK 212 (213)
T ss_dssp STTHHHHHHHHHHHHTTSSEEEEEET---T-SSSTTSHHHHH-HHHHHHHHHHHHHTT-
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEEcC---cCCCCCCCchhHH-HHHHHHHHHHHHHcCC
Confidence 99999999999999999998888887 9999776544433 5667789999999975
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-28 Score=278.93 Aligned_cols=389 Identities=18% Similarity=0.188 Sum_probs=253.8
Q ss_pred EeecC-CEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCc-eeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCc
Q 004368 336 ASHRG-NHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESV-KLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEP 413 (758)
Q Consensus 336 ~s~dg-~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~ 413 (758)
++.|+ ..+++....+ .+-.++.......+.....++....+. .+....-+.+.+++.+...+...-.+|.++.....
T Consensus 347 ~~~d~~~~~~~~~~~~-~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~ 425 (755)
T KOG2100|consen 347 FSSDGSSYLKVDSVSD-GGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSGT 425 (755)
T ss_pred EeecCCceeEEEeecc-CCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEccccc
Confidence 55555 3344444444 223445555544422222233222221 12222224457777776654444445555432322
Q ss_pred cccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEEEEEe--ee----cCCCCCCCceeE
Q 004368 414 LKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIE--TV----LGGFDTNNYFTE 487 (758)
Q Consensus 414 ~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~~~~~--~~----~~~~~~~~~~~~ 487 (758)
+..++-. ... ....+...+.+.....+++..+.+..|...+..-..........+. .. ...+.......+
T Consensus 426 ~~~lt~~-~~~---~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le~n~~~~~~~~~~~~p~~~~~ 501 (755)
T KOG2100|consen 426 VESLTCS-LIT---GPCTYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLETNEELKKTIENVALPIVEFG 501 (755)
T ss_pred ccccccc-CCC---CcceEEEEecCCcccEEEEEccCCCCCcceeeccccccceEEEEeccChhhHHHhhcccCCcceeE
Confidence 2111111 010 1112223444555667777777888875422111111111111121 10 111111222233
Q ss_pred EEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC-CCCC--hHHHHHHHcCcEEEEEecCCCCCCchhHH
Q 004368 488 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFN--SSRLSLLDRGFIFAIAQIRGGGELGRQWY 564 (758)
Q Consensus 488 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~--~~~~~l~~~G~~v~~~~~RG~g~~G~~~~ 564 (758)
.+.+ ||....+.++.|+++ .+.+++|+++.+|||+++..- ..|. .....+..+|++|+.+|+||+|++|.++.
T Consensus 502 ~i~~---~~~~~~~~~~lP~~~-~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~ 577 (755)
T KOG2100|consen 502 KIEI---DGITANAILILPPNF-DPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFR 577 (755)
T ss_pred EEEe---ccEEEEEEEecCCCC-CCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHH
Confidence 4443 889999999999998 778899999999999984322 2222 23345667899999999999999999999
Q ss_pred hcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCC-CceeEEEEcCCccchhhccCCCCCCC
Q 004368 565 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP-DLFKAAVAAVPFVDVLTTMLDPTIPL 643 (758)
Q Consensus 565 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p-~~f~a~v~~~~~~d~~~~~~~~~~~~ 643 (758)
.+..+..+..+++|.+.+++++.+.+++|++||+|+|+|+|||+++.++.+.| +.|+|+++.+|++|+. +. +...
T Consensus 578 ~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~y-ds~~-- 653 (755)
T KOG2100|consen 578 SALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YY-DSTY-- 653 (755)
T ss_pred HHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-ee-cccc--
Confidence 99999999999999999999999999999999999999999999999999987 8999999999999988 32 2111
Q ss_pred Chhhhhcc-CCCC-CHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCC
Q 004368 644 TTAEWEEW-GDPW-KEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 721 (758)
Q Consensus 644 ~~~~~~e~-g~p~-~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 721 (758)
+ ++| |.|. +...| .+.++..++..++.|-+|++||+.|++|++.|+.+++++|+.+|++.++++|+ ++
T Consensus 654 t----erymg~p~~~~~~y---~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vyp---de 723 (755)
T KOG2100|consen 654 T----ERYMGLPSENDKGY---EESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYP---DE 723 (755)
T ss_pred c----HhhcCCCccccchh---hhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeC---CC
Confidence 1 345 6663 33334 45677777777777867999999999999999999999999999999999998 99
Q ss_pred CCCCCCCh--HHHHHHHHHHHHHHHHhcCCC
Q 004368 722 GHFSKSGR--FERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 722 gH~~~~~~--~~~~~~~~~~~~fl~~~l~~~ 750 (758)
.|+..... ...+.+ +..||..+++..
T Consensus 724 ~H~is~~~~~~~~~~~---~~~~~~~~~~~~ 751 (755)
T KOG2100|consen 724 NHGISYVEVISHLYEK---LDRFLRDCFGSP 751 (755)
T ss_pred CcccccccchHHHHHH---HHHHHHHHcCcc
Confidence 99886543 333333 578998777654
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=189.90 Aligned_cols=225 Identities=16% Similarity=0.140 Sum_probs=156.0
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCC-CCCchhHH
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGG-GELGRQWY 564 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~-g~~G~~~~ 564 (758)
+....+.+.||.+|.+|+..|++. ..++.|+||++|| ++... ..|...+..|+++||+|+.+|.||+ |+++.++.
T Consensus 9 ~~~~~~~~~dG~~L~Gwl~~P~~~--~~~~~~~vIi~HG-f~~~~-~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~ 84 (307)
T PRK13604 9 TIDHVICLENGQSIRVWETLPKEN--SPKKNNTILIASG-FARRM-DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTID 84 (307)
T ss_pred chhheEEcCCCCEEEEEEEcCccc--CCCCCCEEEEeCC-CCCCh-HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccc
Confidence 344557788999999999888753 2467899999999 44332 2366677899999999999999987 77776664
Q ss_pred hcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCC---C--
Q 004368 565 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD---P-- 639 (758)
Q Consensus 565 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~---~-- 639 (758)
+..... ...|+.++++||.+++ .++|+++|+|+||.++..+++.. ..+++|+.+|+.++..+... .
T Consensus 85 ~~t~s~----g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~d~l~~~~~~~~ 155 (307)
T PRK13604 85 EFTMSI----GKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLRDTLERALGYDY 155 (307)
T ss_pred cCcccc----cHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHHHHHHHhhhccc
Confidence 332212 2589999999998863 47899999999999987666643 38999999999985533211 0
Q ss_pred -CCCCChh-hhhcc-CCCC-CHHHHHHHHh------cCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCC
Q 004368 640 -TIPLTTA-EWEEW-GDPW-KEEFYFYMKS------YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 709 (758)
Q Consensus 640 -~~~~~~~-~~~e~-g~p~-~~~~~~~l~~------~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~ 709 (758)
.+|+... ....+ |..- ....++.... .+|+..+++.+.| +|++||.+|+.||+.++++++++++. .+
T Consensus 156 ~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~P-vLiIHG~~D~lVp~~~s~~l~e~~~s--~~ 232 (307)
T PRK13604 156 LSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIP-FIAFTANNDSWVKQSEVIDLLDSIRS--EQ 232 (307)
T ss_pred ccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCC-EEEEEcCCCCccCHHHHHHHHHHhcc--CC
Confidence 0111000 00001 1111 1122222222 3455777778888 99999999999999999999998754 34
Q ss_pred CceEEEEecCCCCCCCCCCh
Q 004368 710 DNILLFKCELGAGHFSKSGR 729 (758)
Q Consensus 710 ~~~~~~~~~~~~gH~~~~~~ 729 (758)
.+++.++ ++.|....+.
T Consensus 233 kkl~~i~---Ga~H~l~~~~ 249 (307)
T PRK13604 233 CKLYSLI---GSSHDLGENL 249 (307)
T ss_pred cEEEEeC---CCccccCcch
Confidence 5667776 9999876553
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-20 Score=187.36 Aligned_cols=231 Identities=16% Similarity=0.158 Sum_probs=148.1
Q ss_pred EEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCC-chhHHhccc--ccCCcCh
Q 004368 499 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGEL-GRQWYENGK--FLKKKNT 575 (758)
Q Consensus 499 i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~-G~~~~~~~~--~~~~~~~ 575 (758)
++...++|++. .+++.|+||++||..+.. ..|......|+++||.|+++|+||+|.. +..-..... .......
T Consensus 12 ~~~~~~~p~~~--~~~~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~ 87 (249)
T PRK10566 12 IEVLHAFPAGQ--RDTPLPTVFFYHGFTSSK--LVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQN 87 (249)
T ss_pred cceEEEcCCCC--CCCCCCEEEEeCCCCccc--chHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHH
Confidence 44455666542 235689999999964433 3466667888999999999999998742 110000000 0001134
Q ss_pred HhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEE-cCCccchhhccCCCCCCCChhhhhccCCC
Q 004368 576 FTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA-AVPFVDVLTTMLDPTIPLTTAEWEEWGDP 654 (758)
Q Consensus 576 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~-~~~~~d~~~~~~~~~~~~~~~~~~e~g~p 654 (758)
.+|+.++++++.+++.+|+++|+++|+|+||++++.++.++|+..++++. ..+..+.......+..... .+....
T Consensus 88 ~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 163 (249)
T PRK10566 88 MQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFTSLARTLFPPLIPE----TAAQQA 163 (249)
T ss_pred HHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHHHHHHHhccccccc----ccccHH
Confidence 67888899999999889999999999999999999999988876544432 3333221111000000000 000000
Q ss_pred CCHHHHHHHHhcCcccccCCC-CCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCC--CceEEEEecCCCCCCCCCChHH
Q 004368 655 WKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD--DNILLFKCELGAGHFSKSGRFE 731 (758)
Q Consensus 655 ~~~~~~~~l~~~sp~~~i~~~-~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~gH~~~~~~~~ 731 (758)
...+.+..+..+++...+.++ ..| +|++||++|..||+.++++++++|+.++.+ .++++++ ++||... ..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~i~~~P-~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~---~~~H~~~---~~ 236 (249)
T PRK10566 164 EFNNIVAPLAEWEVTHQLEQLADRP-LLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEP---GVRHRIT---PE 236 (249)
T ss_pred HHHHHHHHHhhcChhhhhhhcCCCC-EEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecC---CCCCccC---HH
Confidence 011122334456666666665 577 999999999999999999999999998865 3444554 9999763 22
Q ss_pred HHHHHHHHHHHHHHhc
Q 004368 732 RLREAAFTYTFLMRAL 747 (758)
Q Consensus 732 ~~~~~~~~~~fl~~~l 747 (758)
....+.+||.++|
T Consensus 237 ---~~~~~~~fl~~~~ 249 (249)
T PRK10566 237 ---ALDAGVAFFRQHL 249 (249)
T ss_pred ---HHHHHHHHHHhhC
Confidence 3445689998875
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-19 Score=187.51 Aligned_cols=264 Identities=14% Similarity=0.116 Sum_probs=165.4
Q ss_pred CCCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCC
Q 004368 480 DTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGEL 559 (758)
Q Consensus 480 ~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~ 559 (758)
.+.++..+...+++.||.+|++....|.+. ..+.|+||++||... .....|......|+++||.|+.+|+||+|..
T Consensus 26 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~---~~~~~~VvllHG~~~-~~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S 101 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRGLSLFTRSWLPSSS---SPPRALIFMVHGYGN-DISWTFQSTAIFLAQMGFACFALDLEGHGRS 101 (330)
T ss_pred hccCCccccceEEcCCCCEEEEEEEecCCC---CCCceEEEEEcCCCC-CcceehhHHHHHHHhCCCEEEEecCCCCCCC
Confidence 344455566678888999999876665432 135689999999632 2233455555678889999999999999976
Q ss_pred chhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCC
Q 004368 560 GRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP 639 (758)
Q Consensus 560 G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~ 639 (758)
... .+....-....+|+.+++++|......+..++.++|+|+||.+++.++.++|++++++|+.+|+.++...+...
T Consensus 102 ~~~---~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 178 (330)
T PLN02298 102 EGL---RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPP 178 (330)
T ss_pred CCc---cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCc
Confidence 421 01001112346789999999877643445689999999999999999999999999999999876532211000
Q ss_pred ------------CCCCCh-hhhhc-cC-CCCCHHHHHHHHhcCc----------------------ccccCCCCCCeEEE
Q 004368 640 ------------TIPLTT-AEWEE-WG-DPWKEEFYFYMKSYSP----------------------VDNVKAQNYPHILV 682 (758)
Q Consensus 640 ------------~~~~~~-~~~~e-~g-~p~~~~~~~~l~~~sp----------------------~~~i~~~~~P~~Li 682 (758)
..+... ..... .. ....+. ...+...+| ..++.++.+| +||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vLi 256 (330)
T PLN02298 179 WPIPQILTFVARFLPTLAIVPTADLLEKSVKVPA-KKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIP-FIV 256 (330)
T ss_pred hHHHHHHHHHHHHCCCCccccCCCcccccccCHH-HHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCC-EEE
Confidence 000000 00000 00 000000 000011111 1334566788 999
Q ss_pred eccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHH-HH-HHHHHHHHHHHhcCCCCCCCCCCC
Q 004368 683 TAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFER-LR-EAAFTYTFLMRALSMLPSVGSEQS 758 (758)
Q Consensus 683 ~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~-~~-~~~~~~~fl~~~l~~~~~~~~~~~ 758 (758)
+||.+|..||+.+++++++++...+ .++++++ ++||......... .+ -...+.+||.++++... -|||.|
T Consensus 257 i~G~~D~ivp~~~~~~l~~~i~~~~--~~l~~~~---~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~~~-~~~~~~ 328 (330)
T PLN02298 257 LHGSADVVTDPDVSRALYEEAKSED--KTIKIYD---GMMHSLLFGEPDENIEIVRRDILSWLNERCTGKA-TPSEDS 328 (330)
T ss_pred EecCCCCCCCHHHHHHHHHHhccCC--ceEEEcC---CcEeeeecCCCHHHHHHHHHHHHHHHHHhccCCC-CCcccc
Confidence 9999999999999999998876433 4566665 8999864322221 11 23346899999986544 445543
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-19 Score=170.48 Aligned_cols=231 Identities=22% Similarity=0.275 Sum_probs=169.5
Q ss_pred CCCCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCC
Q 004368 479 FDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGE 558 (758)
Q Consensus 479 ~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~ 558 (758)
+.....++-.+++++.+|.+|.+|++.|+.. .++.|+||..|| |+.... +......|+..||+|+.+|.||.|+
T Consensus 49 ~~~~~ve~ydvTf~g~~g~rI~gwlvlP~~~---~~~~P~vV~fhG-Y~g~~g--~~~~~l~wa~~Gyavf~MdvRGQg~ 122 (321)
T COG3458 49 FTLPRVEVYDVTFTGYGGARIKGWLVLPRHE---KGKLPAVVQFHG-YGGRGG--EWHDMLHWAVAGYAVFVMDVRGQGS 122 (321)
T ss_pred ccCCceEEEEEEEeccCCceEEEEEEeeccc---CCccceEEEEee-ccCCCC--CccccccccccceeEEEEecccCCC
Confidence 4445667788999999999999999999864 378999999998 443322 3335677888999999999999887
Q ss_pred Cch------------hHHhcccccCC-----cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCcee
Q 004368 559 LGR------------QWYENGKFLKK-----KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621 (758)
Q Consensus 559 ~G~------------~~~~~~~~~~~-----~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~ 621 (758)
+-. .|+..|....+ ...+.|...+++-|.....+|++||++.|+|.||.+++++++..| +.+
T Consensus 123 ~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik 201 (321)
T COG3458 123 SSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIK 201 (321)
T ss_pred ccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhh
Confidence 622 12222222212 367899999999999999999999999999999999999999865 889
Q ss_pred EEEEcCCccchhhccCCCCCCCChhhhhc------cCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChH
Q 004368 622 AAVAAVPFVDVLTTMLDPTIPLTTAEWEE------WGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSE 695 (758)
Q Consensus 622 a~v~~~~~~d~~~~~~~~~~~~~~~~~~e------~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~ 695 (758)
++++.+|++.-.....+ + .+...|.| .-.|...+.++.|.-++-.+-+.+++.| +|+..|.-|++|||.-
T Consensus 202 ~~~~~~Pfl~df~r~i~--~-~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~p-vL~svgL~D~vcpPst 277 (321)
T COG3458 202 AVVADYPFLSDFPRAIE--L-ATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVP-VLMSVGLMDPVCPPST 277 (321)
T ss_pred cccccccccccchhhee--e-cccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccc-eEEeecccCCCCCChh
Confidence 99999998542221111 1 12222222 1233456677777766767777778998 9999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEecCCCCCCCC
Q 004368 696 PAKFVAKLREMKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 696 ~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 726 (758)
....+++|...+ +.-+|+ .-+|...
T Consensus 278 qFA~yN~l~~~K---~i~iy~---~~aHe~~ 302 (321)
T COG3458 278 QFAAYNALTTSK---TIEIYP---YFAHEGG 302 (321)
T ss_pred hHHHhhcccCCc---eEEEee---ccccccC
Confidence 999999886543 334555 4457643
|
|
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=188.17 Aligned_cols=240 Identities=17% Similarity=0.109 Sum_probs=157.2
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchh
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~ 562 (758)
.+..+++.++..||..|+++++.|+. +++.|+||+. ||.+......|......|+++||+|+.+|+||.|+...
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~----~~~~P~Vli~-gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~- 238 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG----DGPFPTVLVC-GGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSK- 238 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC----CCCccEEEEe-CCcccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCC-
Confidence 34568999999899889999888863 2568988865 44554333345555678999999999999999887532
Q ss_pred HHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCC--CC
Q 004368 563 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD--PT 640 (758)
Q Consensus 563 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~--~~ 640 (758)
+. ..........+++++|.....+|++||+++|+|+||++++.++..+|++++++|+..|+++....... ..
T Consensus 239 ~~------~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~ 312 (414)
T PRK05077 239 WK------LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQ 312 (414)
T ss_pred CC------ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhh
Confidence 10 01111123357889999999999999999999999999999999889999999999988752211100 01
Q ss_pred CCCChhh-h-hccCCC-CC-HHHHHHHHhcCccc--c-cCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceE
Q 004368 641 IPLTTAE-W-EEWGDP-WK-EEFYFYMKSYSPVD--N-VKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 713 (758)
Q Consensus 641 ~~~~~~~-~-~e~g~p-~~-~~~~~~l~~~sp~~--~-i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 713 (758)
.|..... + ...|.+ .+ ......+..++... . .+++++| +|++||++|+.||+.+++.+++... +.+++
T Consensus 313 ~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~P-vLiI~G~~D~ivP~~~a~~l~~~~~----~~~l~ 387 (414)
T PRK05077 313 VPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTP-MLSGYWKNDPFSPEEDSRLIASSSA----DGKLL 387 (414)
T ss_pred chHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCc-EEEEecCCCCCCCHHHHHHHHHhCC----CCeEE
Confidence 1111000 1 123432 22 22333344444211 1 2456788 9999999999999999987765442 34567
Q ss_pred EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 004368 714 LFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 714 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 747 (758)
.++ +..|. ......+ ..+..||.++|
T Consensus 388 ~i~---~~~~~--e~~~~~~---~~i~~wL~~~l 413 (414)
T PRK05077 388 EIP---FKPVY--RNFDKAL---QEISDWLEDRL 413 (414)
T ss_pred Ecc---CCCcc--CCHHHHH---HHHHHHHHHHh
Confidence 776 44222 2233333 33678998876
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-18 Score=177.65 Aligned_cols=224 Identities=17% Similarity=0.174 Sum_probs=144.3
Q ss_pred eeEEEEeeCC-CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHH-HHHHHcCcEEEEEecCCCC-----
Q 004368 485 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSR-LSLLDRGFIFAIAQIRGGG----- 557 (758)
Q Consensus 485 ~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~-~~l~~~G~~v~~~~~RG~g----- 557 (758)
..+++++.|. =|..+++.+++|+. ..+++.|+|+++||..+....+...... ..+...|++|+++|..++|
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~--~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~ 94 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPA--SDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEG 94 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCc--ccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCC
Confidence 3455555553 46789999999984 3456899999999976554333222222 3445679999999986544
Q ss_pred -------CCchhHHhccc-ccC---C--cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEE
Q 004368 558 -------ELGRQWYENGK-FLK---K--KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAV 624 (758)
Q Consensus 558 -------~~G~~~~~~~~-~~~---~--~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v 624 (758)
++|..|+.... ..+ + ....+++...++... ..+|+++++|+|+|+||++++.++.++|++|++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~ 172 (283)
T PLN02442 95 EADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVS 172 (283)
T ss_pred CccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEE
Confidence 11222221110 000 1 001223333333222 23688999999999999999999999999999999
Q ss_pred EcCCccchhhccCCCCCCCChhhh-hccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCCh-HHHHHHHH
Q 004368 625 AAVPFVDVLTTMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYS-EPAKFVAK 702 (758)
Q Consensus 625 ~~~~~~d~~~~~~~~~~~~~~~~~-~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~-~~~~~~~~ 702 (758)
+.+|+.|+... ++..... ..+|.+. +.++.....+|+.++...+.| +|++||++|+.|+.. ++..++++
T Consensus 173 ~~~~~~~~~~~------~~~~~~~~~~~g~~~--~~~~~~d~~~~~~~~~~~~~p-vli~~G~~D~~v~~~~~s~~~~~~ 243 (283)
T PLN02442 173 AFAPIANPINC------PWGQKAFTNYLGSDK--ADWEEYDATELVSKFNDVSAT-ILIDQGEADKFLKEQLLPENFEEA 243 (283)
T ss_pred EECCccCcccC------chhhHHHHHHcCCCh--hhHHHcChhhhhhhccccCCC-EEEEECCCCccccccccHHHHHHH
Confidence 99999885421 1111111 2235432 222222333445555555666 999999999999974 68999999
Q ss_pred HHhcCCCCceEEEEecCCCCCC
Q 004368 703 LREMKTDDNILLFKCELGAGHF 724 (758)
Q Consensus 703 L~~~~~~~~~~~~~~~~~~gH~ 724 (758)
+++.+.++++.+++ +.+|.
T Consensus 244 l~~~g~~~~~~~~p---g~~H~ 262 (283)
T PLN02442 244 CKEAGAPVTLRLQP---GYDHS 262 (283)
T ss_pred HHHcCCCeEEEEeC---CCCcc
Confidence 99999888777776 88995
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-19 Score=183.99 Aligned_cols=247 Identities=20% Similarity=0.246 Sum_probs=162.8
Q ss_pred CCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCc
Q 004368 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG 560 (758)
Q Consensus 481 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G 560 (758)
...+.+..+.+.+.+|..|.++++.|++. .++.|+||..||..+.... ......|+.+||+|+.+|.||.|+..
T Consensus 51 ~~~~~vy~v~f~s~~g~~V~g~l~~P~~~---~~~~Pavv~~hGyg~~~~~---~~~~~~~a~~G~~vl~~d~rGqg~~~ 124 (320)
T PF05448_consen 51 TPGVEVYDVSFESFDGSRVYGWLYRPKNA---KGKLPAVVQFHGYGGRSGD---PFDLLPWAAAGYAVLAMDVRGQGGRS 124 (320)
T ss_dssp BSSEEEEEEEEEEGGGEEEEEEEEEES-S---SSSEEEEEEE--TT--GGG---HHHHHHHHHTT-EEEEE--TTTSSSS
T ss_pred CCCEEEEEEEEEccCCCEEEEEEEecCCC---CCCcCEEEEecCCCCCCCC---cccccccccCCeEEEEecCCCCCCCC
Confidence 34667788999999999999999999854 4789999999984333211 12345789999999999999998543
Q ss_pred hhHHh-----------cccccCC-----cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEE
Q 004368 561 RQWYE-----------NGKFLKK-----KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAV 624 (758)
Q Consensus 561 ~~~~~-----------~~~~~~~-----~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v 624 (758)
.+... .|..... ...+.|.+.++++|.+...+|++||+++|.|.||.+++++++..| ++++++
T Consensus 125 ~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~ 203 (320)
T PF05448_consen 125 PDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAA 203 (320)
T ss_dssp -B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEE
T ss_pred CCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEE
Confidence 32211 1111101 135689999999999999999999999999999999999999875 699999
Q ss_pred EcCCc-cchhhccC-CC-CCCCC-hhhhhccCCC---CCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHH
Q 004368 625 AAVPF-VDVLTTML-DP-TIPLT-TAEWEEWGDP---WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPA 697 (758)
Q Consensus 625 ~~~~~-~d~~~~~~-~~-~~~~~-~~~~~e~g~p---~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~ 697 (758)
+.+|+ .|....+. .. ..++. ...|..+.++ ..++.++.|.-++..+.++++++| +|+..|..|+.|||.-..
T Consensus 204 ~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~p-vl~~~gl~D~~cPP~t~f 282 (320)
T PF05448_consen 204 ADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCP-VLFSVGLQDPVCPPSTQF 282 (320)
T ss_dssp EESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SE-EEEEEETT-SSS-HHHHH
T ss_pred ecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCC-EEEEEecCCCCCCchhHH
Confidence 99986 45443221 11 12221 1223333333 356678888888999999999998 999999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 698 KFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 698 ~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
..+++|.. +.++++|+ ..||... ..... ...++||.++
T Consensus 283 A~yN~i~~---~K~l~vyp---~~~He~~--~~~~~---~~~~~~l~~~ 320 (320)
T PF05448_consen 283 AAYNAIPG---PKELVVYP---EYGHEYG--PEFQE---DKQLNFLKEH 320 (320)
T ss_dssp HHHCC--S---SEEEEEET---T--SSTT--HHHHH---HHHHHHHHH-
T ss_pred HHHhccCC---CeeEEecc---CcCCCch--hhHHH---HHHHHHHhcC
Confidence 99998864 34677776 8899642 21112 2257899875
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=172.93 Aligned_cols=241 Identities=17% Similarity=0.139 Sum_probs=154.6
Q ss_pred eEEEEeeCC-CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHH-cCcEEEEEec--CCCCCCc-
Q 004368 486 TERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQI--RGGGELG- 560 (758)
Q Consensus 486 ~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~--RG~g~~G- 560 (758)
.+.+.+.|. -+.+++..++.|++. . .++.|+|+++||..+....+.+....+.+++ .|++|+++|. ||.+..|
T Consensus 13 ~~~~~~~s~~~~~~~~~~v~~P~~~-~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~ 90 (275)
T TIGR02821 13 QGFYRHKSETCGVPMTFGVFLPPQA-A-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGE 90 (275)
T ss_pred EEEEEEeccccCCceEEEEEcCCCc-c-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCC
Confidence 345555544 466788888889864 2 3468999999997655544433334456654 6999999997 6665333
Q ss_pred ---------hhHHhccc-ccC--CcChHhHHHHHHHHHHHc-CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcC
Q 004368 561 ---------RQWYENGK-FLK--KKNTFTDFIACAEYLIKN-CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV 627 (758)
Q Consensus 561 ---------~~~~~~~~-~~~--~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 627 (758)
..|+.... ... .......+...+..++++ ..+|+++++++|+||||++++.++.++|++|+++++.+
T Consensus 91 ~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~ 170 (275)
T TIGR02821 91 DDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFA 170 (275)
T ss_pred cccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEEC
Confidence 12221110 000 111223334444444444 44788999999999999999999999999999999999
Q ss_pred CccchhhccCCCCCCCChhhhh-ccCCCCCHHHHHHHHhcCcccccCCC-CCCeEEEeccCCCCCCCC-hHHHHHHHHHH
Q 004368 628 PFVDVLTTMLDPTIPLTTAEWE-EWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMY-SEPAKFVAKLR 704 (758)
Q Consensus 628 ~~~d~~~~~~~~~~~~~~~~~~-e~g~p~~~~~~~~l~~~sp~~~i~~~-~~P~~Li~~G~~D~~V~~-~~~~~~~~~L~ 704 (758)
|+++.... ++...... .+|.+. +. +..++|...+.+. ..||+||.||+.|++|+. .++..+.++|+
T Consensus 171 ~~~~~~~~------~~~~~~~~~~l~~~~--~~---~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~ 239 (275)
T TIGR02821 171 PIVAPSRC------PWGQKAFSAYLGADE--AA---WRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACR 239 (275)
T ss_pred CccCcccC------cchHHHHHHHhcccc--cc---hhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHH
Confidence 99875321 11111111 123321 11 1234555444432 345699999999999999 68999999999
Q ss_pred hcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 705 EMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 705 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
+++.+++++.++ +.+|++.. ......+.+.|+.++
T Consensus 240 ~~g~~v~~~~~~---g~~H~f~~----~~~~~~~~~~~~~~~ 274 (275)
T TIGR02821 240 AAGQALTLRRQA---GYDHSYYF----IASFIADHLRHHAER 274 (275)
T ss_pred HcCCCeEEEEeC---CCCccchh----HHHhHHHHHHHHHhh
Confidence 999988877776 88997532 112233346676654
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-17 Score=181.53 Aligned_cols=277 Identities=12% Similarity=0.044 Sum_probs=189.7
Q ss_pred HHHHHHHHhcCchHhHHHHHHHHHccccCCCCCCcEEeCcEEEEEEecCCCeeEEEEEEecCCCCCCCCccccCCCCCCC
Q 004368 93 ENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDA 172 (758)
Q Consensus 93 en~y~~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 172 (758)
|+.++++++... +.++++..+|...+.....+.|...+..++|.+..+++....++.....+
T Consensus 118 ~~~~~~~~~~~~-~~~~~~a~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g----------------- 179 (417)
T TIGR02800 118 LQLLGKQYTVTA-SQLRRVAHRIADAIYEKLTGERGAFSTRIAYVSKSGKSRRYELQVADYDG----------------- 179 (417)
T ss_pred EEeeeeeEEcCH-HHHHHHHHHHHHHHHHHhcCCCCCcCCEEEEEEEeCCCCcceEEEEcCCC-----------------
Confidence 566667777665 56667777777766666567777778877777665544444455433321
Q ss_pred CCceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEE
Q 004368 173 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALV 250 (758)
Q Consensus 173 ~~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~ 250 (758)
...+.|++.+.. +..+.|||||++|||+...++ ..+|+++|+++|+.... ...+....++|+||| .|+
T Consensus 180 ~~~~~l~~~~~~--------~~~p~~Spdg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 180 ANPQTITRSREP--------ILSPAWSPDGQKLAYVSFESG--KPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred CCCEEeecCCCc--------eecccCCCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 245677776532 346789999999999987665 37899999999876554 344444558999999 788
Q ss_pred EEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc
Q 004368 251 YITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV 330 (758)
Q Consensus 251 y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~ 330 (758)
|+.... ...+||.++++++.. ..+... ......+.|+|||++|++.+...+..+||++|+.+++ .+.++....
T Consensus 250 ~~~~~~--~~~~i~~~d~~~~~~--~~l~~~--~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~~l~~~~~ 322 (417)
T TIGR02800 250 VSLSKD--GNPDIYVMDLDGKQL--TRLTNG--PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VRRLTFRGG 322 (417)
T ss_pred EEECCC--CCccEEEEECCCCCE--EECCCC--CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCC
Confidence 875432 235699999987643 223221 1222356899999999998877667799999998876 666654322
Q ss_pred c-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 331 G-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 331 ~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
. ....|+|||+.+++..... ..++|+.+++++ +..+ ++..........++++++.|++...+++...+++++.+
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~-~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREG--GGFNIAVMDLDG-GGER-VLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CccCeEECCCCCEEEEEEccC--CceEEEEEeCCC-CCeE-EccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 2 3445999999998887654 468999999876 2322 33332222233677788899999888888888888765
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=174.93 Aligned_cols=234 Identities=15% Similarity=0.095 Sum_probs=159.4
Q ss_pred eeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC-CCCChHHHHHHH-cCcEEEEEecCCCCCCchh
Q 004368 485 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 485 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G~~ 562 (758)
.++.+.+++.+| .|++.+++|+.. ..|+||++|||...... ..+...+..|+. .|+.|+.+|||...+..
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~~-----~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~~-- 127 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQPD-----SQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEAR-- 127 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCCC-----CCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCCC--
Confidence 467788888888 599998888532 36999999998644332 345556677777 49999999999876531
Q ss_pred HHhcccccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhC------CCceeEEEEcCCccchh
Q 004368 563 WYENGKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR------PDLFKAAVAAVPFVDVL 633 (758)
Q Consensus 563 ~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~~~~d~~ 633 (758)
.+..++|+.++++|+.++ -.+|++||+|+|+|+||.++++++.+. +..++++|+.+|++|+.
T Consensus 128 ---------~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~ 198 (318)
T PRK10162 128 ---------FPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLR 198 (318)
T ss_pred ---------CCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCC
Confidence 234579999999998764 346899999999999999998888653 35789999999998853
Q ss_pred hccC----CCCC-CCChhhh----hcc-CCCCCHHHHHHHHhcCccccc--CC--CCCCeEEEeccCCCCCCCChHHHHH
Q 004368 634 TTML----DPTI-PLTTAEW----EEW-GDPWKEEFYFYMKSYSPVDNV--KA--QNYPHILVTAGLNDPRVMYSEPAKF 699 (758)
Q Consensus 634 ~~~~----~~~~-~~~~~~~----~e~-g~p~~~~~~~~l~~~sp~~~i--~~--~~~P~~Li~~G~~D~~V~~~~~~~~ 699 (758)
.... .... .++...+ ..| +++.+ ..+|+... .. ...||++|++|++|+.++ +++.|
T Consensus 199 ~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~--------~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~d--e~~~~ 268 (318)
T PRK10162 199 DSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDAD--------RESPYYCLFNNDLTRDVPPCFIAGAEFDPLLD--DSRLL 268 (318)
T ss_pred CChhHHHhCCCccccCHHHHHHHHHHhCCCccc--------cCCcccCcchhhhhcCCCCeEEEecCCCcCcC--hHHHH
Confidence 2100 0000 1111111 011 22111 12333211 11 246889999999999864 99999
Q ss_pred HHHHHhcCCCCceEEEEecCCCCCCCCC--C-hHHHHHHHHHHHHHHHHhcC
Q 004368 700 VAKLREMKTDDNILLFKCELGAGHFSKS--G-RFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 700 ~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~-~~~~~~~~~~~~~fl~~~l~ 748 (758)
+++|+++|++++++.++ +..|++.. . -....+...++.+||.++|+
T Consensus 269 ~~~L~~aGv~v~~~~~~---g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 269 YQTLAAHQQPCEFKLYP---GTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHHHHcCCCEEEEEEC---CCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 99999999998888886 89997632 1 12333344556789988875
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-16 Score=172.18 Aligned_cols=205 Identities=12% Similarity=0.128 Sum_probs=148.8
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+..+.|||||++|||+...+| ..+||++|+.+|+...+ ..++....++||||| +|+|+.... ...+||.+++.+
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g--~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~--g~~~Iy~~dl~t 295 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENR--KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD--GQPEIYVVDIAT 295 (448)
T ss_pred ccCceECCCCCEEEEEEecCC--CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC--CCeEEEEEECCC
Confidence 457899999999999988765 47899999999987655 344445568999999 798876543 235799999987
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-ccceeeEEeecCCEEEEEEcC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVGVDTAASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~~s~dg~~l~~~s~~ 349 (758)
+. ...+... ......+.|||||++|++.+...+..+||++|+++++ .+.++.. .......|+|||++|+|.+..
T Consensus 296 g~--~~~lt~~--~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 296 KA--LTRITRH--RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-VSRLTFEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred CC--eEECccC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEEecCCCCCcCeeECCCCCEEEEEEec
Confidence 63 2333222 1223457899999999999877777899999998887 6666532 222234599999999998765
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCC
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
. ..++|+++++++. ..+.+.....+. -..++++++.+++....++...+++++++ |.
T Consensus 371 ~--g~~~I~~~dl~~g-~~~~lt~~~~d~-~ps~spdG~~I~~~~~~~g~~~l~~~~~~--G~ 427 (448)
T PRK04792 371 N--GKFNIARQDLETG-AMQVLTSTRLDE-SPSVAPNGTMVIYSTTYQGKQVLAAVSID--GR 427 (448)
T ss_pred C--CceEEEEEECCCC-CeEEccCCCCCC-CceECCCCCEEEEEEecCCceEEEEEECC--CC
Confidence 4 3578999998763 333344332222 23677788899988888888888888775 55
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-16 Score=171.95 Aligned_cols=207 Identities=12% Similarity=0.033 Sum_probs=140.8
Q ss_pred eeEEECCCCCE--EEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEE--E
Q 004368 194 GCFQVSPDNKL--VAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH--K 267 (758)
Q Consensus 194 ~~~~~SPDG~~--lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~--~ 267 (758)
..|.|||||+. ++|++.++| ..+||++++++|+..++ ..++....++||||| +|+|+....+ ..++|.+ +
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g--~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g--~~di~~~~~~ 263 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLG--VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYG--NPDLFIQSFS 263 (428)
T ss_pred ccceEccCCCceEEEEEEccCC--CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCC--CcceeEEEee
Confidence 57899999988 566888777 47999999999987765 345555568999999 8999875332 2246654 4
Q ss_pred cCCCC-CCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeeccccc-eeeEEeecCCEEE
Q 004368 268 LEADQ-SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVG-VDTAASHRGNHFF 344 (758)
Q Consensus 268 l~~~~-~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~-~~~~~s~dg~~l~ 344 (758)
+.++. .+...+.... ......+.|||||++|+|.+...+..+||+++++... ..+.++..... ....|||||++|+
T Consensus 264 ~~~g~~g~~~~lt~~~-~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~La 342 (428)
T PRK01029 264 LETGAIGKPRRLLNEA-FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIA 342 (428)
T ss_pred cccCCCCcceEeecCC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEE
Confidence 43321 1233344322 1222357899999999998876667889999886322 25666554322 3456999999999
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
|.+..++ ..+|+++|+++. ..+.+...........++++++.|++....++...+++++++
T Consensus 343 f~~~~~g--~~~I~v~dl~~g-~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 343 FCSVIKG--VRQICVYDLATG-RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred EEEcCCC--CcEEEEEECCCC-CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 9987653 578999999763 334454332222233455566788888777777788888887
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.2e-16 Score=167.99 Aligned_cols=204 Identities=10% Similarity=0.022 Sum_probs=148.3
Q ss_pred EeeEEECCCCCE-EEEEEeCCCCeEEEEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 193 VGCFQVSPDNKL-VAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 193 i~~~~~SPDG~~-lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
...+.|||||++ ++|+...++ ..+||++|+++|+...++ .++....+.||||| +++|+.... ...++|.+++.
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~--~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~--g~~~Iy~~dl~ 265 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGER--KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPK--GQPDIYLYDTN 265 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCC--CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccC--CCcEEEEEECC
Confidence 347899999996 666666544 359999999999987763 34445568999999 898887543 24679999987
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcC
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRS 349 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~ 349 (758)
++. ...+.... .....+.|||||++|+|.++..+..+||++|+++++ .++++.... ....|||||+.|++.+..
T Consensus 266 ~g~--~~~LT~~~--~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~rlt~~g~-~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 266 TKT--LTQITNYP--GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQVVFHGK-NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CCc--EEEcccCC--CccCccEECCCCCEEEEEECCCCCceEEEEECCCCC-eEeCccCCC-cCceECCCCCEEEEEEcC
Confidence 763 33333222 123456899999999999988888899999999887 666654321 234699999999999876
Q ss_pred CCC----CCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 350 DEL----FNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 350 ~~~----~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
... ..++|+.+++++. ..+.++....+ ....|+++++.+++.....+...+.+++++
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g-~~~~LT~~~~~-~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSD-YIRRLTANGVN-QFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCcccCCCCcEEEEEECCCC-CeEECCCCCCc-CCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 421 2379999999763 34445544322 245678888899988888888888888887
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=185.51 Aligned_cols=201 Identities=15% Similarity=0.166 Sum_probs=142.9
Q ss_pred HHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHc---------------CCCCCCcEEEEEe
Q 004368 538 RLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN---------------CYCTKEKLCIEGR 602 (758)
Q Consensus 538 ~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---------------~~~d~~~i~i~G~ 602 (758)
...|+.+||+|++.|.||.++++..|.. .+..+.+|..++|+||..+ .|. .++||++|.
T Consensus 272 ~~~~~~rGYaVV~~D~RGtg~SeG~~~~-----~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~Ws-nGkVGm~G~ 345 (767)
T PRK05371 272 NDYFLPRGFAVVYVSGIGTRGSDGCPTT-----GDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWS-NGKVAMTGK 345 (767)
T ss_pred HHHHHhCCeEEEEEcCCCCCCCCCcCcc-----CCHHHHHHHHHHHHHHhhCCccccccccccccccCCC-CCeeEEEEE
Confidence 4689999999999999999988766542 3356779999999999843 343 489999999
Q ss_pred ChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCC---C--CCh--hh-hhc--------cCCC-CC---------
Q 004368 603 SAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI---P--LTT--AE-WEE--------WGDP-WK--------- 656 (758)
Q Consensus 603 S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~---~--~~~--~~-~~e--------~g~p-~~--------- 656 (758)
||||+++.++|+..|+.++|+|..+++.|+..++..... + +.. .. +.+ .|.. ..
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 999999999999889999999999999887543321110 0 000 00 000 0000 00
Q ss_pred ----------HHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC
Q 004368 657 ----------EEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 657 ----------~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 726 (758)
+..-+++.+.++..++.++++| +|++||.+|.+|++.++.+++++|++++.+.++++. ..+|...
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvP-vLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~----~g~H~~~ 500 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKAS-VLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLH----QGGHVYP 500 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCC-EEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEe----CCCccCC
Confidence 0111234556777888899998 999999999999999999999999998888776554 5688653
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCC
Q 004368 727 SGRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 727 ~~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
... ...+....+.+||.++|+..
T Consensus 501 ~~~-~~~d~~e~~~~Wfd~~LkG~ 523 (767)
T PRK05371 501 NNW-QSIDFRDTMNAWFTHKLLGI 523 (767)
T ss_pred Cch-hHHHHHHHHHHHHHhccccC
Confidence 221 22222334689999998643
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=164.40 Aligned_cols=192 Identities=11% Similarity=0.116 Sum_probs=127.5
Q ss_pred EEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHH-HcCcEEEEEecCCCCCCch--hHHhcccccCCcChHhH
Q 004368 502 CIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLL-DRGFIFAIAQIRGGGELGR--QWYENGKFLKKKNTFTD 578 (758)
Q Consensus 502 ~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~-~~G~~v~~~~~RG~g~~G~--~~~~~~~~~~~~~~~~D 578 (758)
+++.|++. +++.|+||++||+.+.............++ +.||+|+.+|+||++..+. .|..............|
T Consensus 2 ~ly~P~~~---~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T TIGR01840 2 YVYVPAGL---TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVES 78 (212)
T ss_pred EEEcCCCC---CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHH
Confidence 56667764 467899999999765433221111133444 4699999999999875443 33332222223356788
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHH
Q 004368 579 FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEE 658 (758)
Q Consensus 579 ~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~ 658 (758)
+...++++.++..+|++||+|+|+|+||+++..++.++|++|+++++.++..-.... .... ...+...+....
T Consensus 79 ~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~----~~~~---~~~~~~~~~~~~ 151 (212)
T TIGR01840 79 LHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEAS----SSIS---ATPQMCTAATAA 151 (212)
T ss_pred HHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccc----cchh---hHhhcCCCCCHH
Confidence 899999999988899999999999999999999999999999999888875321110 0000 011111122222
Q ss_pred HHHHH-HhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhc
Q 004368 659 FYFYM-KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREM 706 (758)
Q Consensus 659 ~~~~l-~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~ 706 (758)
.+..+ .... .-.....|+++|+||.+|.+||+..+++++++|++.
T Consensus 152 ~~~~~~~~~~---~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 152 SVCRLVRGMQ---SEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred HHHHHHhccC---CcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 22222 2111 111225777899999999999999999999999986
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=172.63 Aligned_cols=252 Identities=15% Similarity=0.131 Sum_probs=154.8
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchh
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~ 562 (758)
++..++....+.||.+|......|++. .+.|+||++||..+ .....|......|+++||.|+.+|+||+|.+...
T Consensus 58 ~~~~~~~~~~~~~g~~l~~~~~~p~~~----~~~~~iv~lHG~~~-~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~ 132 (349)
T PLN02385 58 GIKTEESYEVNSRGVEIFSKSWLPENS----RPKAAVCFCHGYGD-TCTFFFEGIARKIASSGYGVFAMDYPGFGLSEGL 132 (349)
T ss_pred CcceeeeeEEcCCCCEEEEEEEecCCC----CCCeEEEEECCCCC-ccchHHHHHHHHHHhCCCEEEEecCCCCCCCCCC
Confidence 344455556667999998877766542 35689999999533 2222234555678888999999999999876421
Q ss_pred HHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCC----
Q 004368 563 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD---- 638 (758)
Q Consensus 563 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~---- 638 (758)
. +....-..-++|+.+.++.+..+...+..++.++|+|+||.+++.++.++|++++++|+.+|+.........
T Consensus 133 ~---~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~ 209 (349)
T PLN02385 133 H---GYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLV 209 (349)
T ss_pred C---CCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHH
Confidence 0 000011122456666666665543344568999999999999999999999999999999886532110000
Q ss_pred -----------CCCCCC-hhhhhc--cCCC-----------------CCHHHHHHHHhc-CcccccCCCCCCeEEEeccC
Q 004368 639 -----------PTIPLT-TAEWEE--WGDP-----------------WKEEFYFYMKSY-SPVDNVKAQNYPHILVTAGL 686 (758)
Q Consensus 639 -----------~~~~~~-~~~~~e--~g~p-----------------~~~~~~~~l~~~-sp~~~i~~~~~P~~Li~~G~ 686 (758)
+...+. ...+.+ +.++ .-...++.++.. .....+.++++| +||+||+
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P-~Lii~G~ 288 (349)
T PLN02385 210 LQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLP-LLILHGE 288 (349)
T ss_pred HHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCC-EEEEEeC
Confidence 000000 000000 0000 001111112111 112345667898 9999999
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHH--HHHHHHHHHHHHHhcC
Q 004368 687 NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFER--LREAAFTYTFLMRALS 748 (758)
Q Consensus 687 ~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~--~~~~~~~~~fl~~~l~ 748 (758)
+|..||+..++++++++... +.++++++ ++||......... .+-..++.+||.+++.
T Consensus 289 ~D~vv~~~~~~~l~~~~~~~--~~~l~~i~---~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 289 ADKVTDPSVSKFLYEKASSS--DKKLKLYE---DAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred CCCccChHHHHHHHHHcCCC--CceEEEeC---CCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 99999999999998877532 34567776 8999875333322 2234457899998864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-15 Score=163.26 Aligned_cols=205 Identities=11% Similarity=0.041 Sum_probs=146.9
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+..++|||||++|||+....| ..+|+++|+.+|+...+ ..++....+.||||| +|+|+.... ...+||.+++.+
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g--~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~--g~~~I~~~d~~t 276 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT--GSLNLYVMDLAS 276 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC--CCcEEEEEECCC
Confidence 568999999999999987665 47899999999987665 344545569999999 888876532 234699999977
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEEEEcC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~ 349 (758)
+. ...+... . .....+.|||||++|++.++..+..+||.+|+++++ .+.++..... ....|+|||++|++.+..
T Consensus 277 g~--~~~lt~~-~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 277 GQ--IRQVTDG-R-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred CC--EEEccCC-C-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence 63 2333322 2 223467899999999998887777899999998876 6666543222 234599999999998876
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCC
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
++ ...|+.+|+++. ..+.+... ....-..+++++..+++...+.+...+++++++ |.
T Consensus 352 ~g--~~~I~~~dl~~g-~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~--G~ 408 (429)
T PRK03629 352 GG--QQHIAKQDLATG-GVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD--GR 408 (429)
T ss_pred CC--CceEEEEECCCC-CeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC--CC
Confidence 52 468999998763 33334432 222234677777888888877777778888886 55
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-15 Score=167.13 Aligned_cols=203 Identities=14% Similarity=0.123 Sum_probs=144.5
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+..+.|||||++|||+...+|. .+||++|+++|+...++ .++....+.||||| +|+|+.... ...+||.+++.+
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~--~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~--g~~~Iy~~d~~~ 279 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGR--PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG--GNTDIYTMDLRS 279 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCC--CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecC--CCceEEEEECCC
Confidence 5679999999999999887663 79999999999876653 44445568999999 888886543 245799999987
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEEEEcC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~ 349 (758)
+. ...+... ......+.|||||++|+|.+...+..+||++|+++++ .+.++..... ....|+|||++|++.+..
T Consensus 280 ~~--~~~Lt~~--~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 280 GT--TTRLTDS--PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-PRRISFGGGRYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred Cc--eEEccCC--CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-eEEeecCCCcccCeEECCCCCEEEEEEcC
Confidence 63 2333322 2223357899999999998877777899999998876 7777653222 234599999999998865
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCe---eEEEEEEcC
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGL---QKITTYRLP 408 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~l~v~~l~ 408 (758)
. ..++|+.+++++. .. .++.......-..|+++++.+++.....+. ..+++++++
T Consensus 355 ~--~~~~i~~~d~~~~-~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 355 G--GQFSIGVMKPDGS-GE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred C--CceEEEEEECCCC-ce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 4 2578999998652 22 333333232334566667788877765554 578888776
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=154.45 Aligned_cols=209 Identities=21% Similarity=0.257 Sum_probs=152.3
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCC-CChHHHHHHH-cCcEEEEEecCCCCCCchhH
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-FNSSRLSLLD-RGFIFAIAQIRGGGELGRQW 563 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~-~G~~v~~~~~RG~g~~G~~~ 563 (758)
.+.+..++..|..+-+..+.|+.. ..+++||.||- .. +.+ .......|.. .++.++..||+|.|..+..
T Consensus 35 v~v~~~~t~rgn~~~~~y~~~~~~-----~~~~lly~hGN--a~-Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~- 105 (258)
T KOG1552|consen 35 VEVFKVKTSRGNEIVCMYVRPPEA-----AHPTLLYSHGN--AA-DLGQMVELFKELSIFLNCNVVSYDYSGYGRSSGK- 105 (258)
T ss_pred cceEEeecCCCCEEEEEEEcCccc-----cceEEEEcCCc--cc-chHHHHHHHHHHhhcccceEEEEecccccccCCC-
Confidence 345556666777776665655432 46999999994 21 221 1111223333 3899999999998876543
Q ss_pred HhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCC
Q 004368 564 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPL 643 (758)
Q Consensus 564 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~ 643 (758)
....+.++|+.++.+||.+... .+++|+++|+|+|...+..++.++| .+|+|+.+||++.++.+... ..
T Consensus 106 ------psE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~--~~ 174 (258)
T KOG1552|consen 106 ------PSERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPD--TK 174 (258)
T ss_pred ------cccccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccC--cc
Confidence 2234888999999999999876 8899999999999999999999988 89999999999987765321 11
Q ss_pred ChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCC
Q 004368 644 TTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGH 723 (758)
Q Consensus 644 ~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH 723 (758)
+...+. .+.-++.|+.+++| +||+||+.|++|++.|+.+++++.+.. .++++.+ ++||
T Consensus 175 ~~~~~d---------------~f~~i~kI~~i~~P-VLiiHgtdDevv~~sHg~~Lye~~k~~---~epl~v~---g~gH 232 (258)
T KOG1552|consen 175 TTYCFD---------------AFPNIEKISKITCP-VLIIHGTDDEVVDFSHGKALYERCKEK---VEPLWVK---GAGH 232 (258)
T ss_pred eEEeec---------------cccccCcceeccCC-EEEEecccCceecccccHHHHHhcccc---CCCcEEe---cCCC
Confidence 100111 12226677788998 999999999999999999999998764 5677777 9999
Q ss_pred CCCCChHHHHHHH
Q 004368 724 FSKSGRFERLREA 736 (758)
Q Consensus 724 ~~~~~~~~~~~~~ 736 (758)
....-..+.++..
T Consensus 233 ~~~~~~~~yi~~l 245 (258)
T KOG1552|consen 233 NDIELYPEYIEHL 245 (258)
T ss_pred cccccCHHHHHHH
Confidence 8765555666654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-15 Score=162.70 Aligned_cols=241 Identities=10% Similarity=0.055 Sum_probs=167.8
Q ss_pred CEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCC-e-EEEEEeCCCCCCceEEEEEcCCCCCCcEEEee
Q 004368 203 KLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-A-LVYITMDEILRPDKAWLHKLEADQSNDICLYH 280 (758)
Q Consensus 203 ~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~-l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~ 280 (758)
+++||.+...|...++|+++|.++......+..+....+.||||| + ++|++... +..+||++++.+++ ...+..
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~--~~~~Iyv~dl~tg~--~~~lt~ 230 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGE--RKPTLYKYNLYTGK--KEKIAS 230 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccC--CCCEEEEEECCCCc--EEEEec
Confidence 577888775554468999999988876655434445568999999 6 66666543 23479999998773 444543
Q ss_pred ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc-ceeeEEeecCCEEEEEEcCCCCCCcEEEE
Q 004368 281 EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSELLA 359 (758)
Q Consensus 281 ~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~~L~~ 359 (758)
. +.....+.|||||++|++.....+..+||++|+++++ .++++.... .....|+|||++|+|.+++.+ ..+||+
T Consensus 231 ~--~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g--~~~Iy~ 305 (419)
T PRK04043 231 S--QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLG--YPNIFM 305 (419)
T ss_pred C--CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCC--CceEEE
Confidence 2 2233356799999999998877777899999998887 788876543 345569999999999999863 468999
Q ss_pred EeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeC------CeeEEEEEEcCCCCCccccccCCceeeccCcccccC
Q 004368 360 CPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREG------GLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSID 433 (758)
Q Consensus 360 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~ 433 (758)
+++++ +..+.++.... . ...++++++.+++..... +..++++++++ ++..+.|+.. . ...
T Consensus 306 ~dl~~-g~~~rlt~~g~-~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~--~g~~~~LT~~--------~-~~~ 371 (419)
T PRK04043 306 KKLNS-GSVEQVVFHGK-N-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN--SDYIRRLTAN--------G-VNQ 371 (419)
T ss_pred EECCC-CCeEeCccCCC-c-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC--CCCeEECCCC--------C-CcC
Confidence 99986 34434443322 2 247888999998887654 33578888876 4433333321 1 122
Q ss_pred CCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 434 PSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 434 ~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
.+++++|+..+.|.... ..-..++.+++.+...
T Consensus 372 ~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 372 FPRFSSDGGSIMFIKYL-GNQSALGIIRLNYNKS 404 (419)
T ss_pred CeEECCCCCEEEEEEcc-CCcEEEEEEecCCCee
Confidence 36678999988887554 3345688999877653
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-16 Score=157.38 Aligned_cols=216 Identities=17% Similarity=0.187 Sum_probs=160.7
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCc------
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG------ 560 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G------ 560 (758)
+.+.+++.| .++++++.+|+.. ++.|+||++|+-+|... ........|+..||+|++||+=+..+..
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~~----~~~P~VIv~hei~Gl~~--~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~ 75 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAGA----GGFPGVIVLHEIFGLNP--HIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDE 75 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCcC----CCCCEEEEEecccCCch--HHHHHHHHHHhCCcEEEechhhccCCCCCccccc
Confidence 456777777 7899999999875 34499999999777543 4556678999999999999985422211
Q ss_pred hhHHhcc--cccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCC
Q 004368 561 RQWYENG--KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD 638 (758)
Q Consensus 561 ~~~~~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~ 638 (758)
......+ ..........|+.++++||..++.+++++|+++|+|+||.+++.++.+.| .++|+++..|..-...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~~~---- 150 (236)
T COG0412 76 PAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIADD---- 150 (236)
T ss_pred HHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCCCc----
Confidence 1122211 01111467899999999999999999999999999999999999999877 7899998887421000
Q ss_pred CCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEec
Q 004368 639 PTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718 (758)
Q Consensus 639 ~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~ 718 (758)
.....++++| +|+.+|..|+.+|.....++.+++.+++..+++.+|.
T Consensus 151 ------------------------------~~~~~~~~~p-vl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~-- 197 (236)
T COG0412 151 ------------------------------TADAPKIKVP-VLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYP-- 197 (236)
T ss_pred ------------------------------ccccccccCc-EEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeC--
Confidence 0004456787 9999999999999999999999999998777777776
Q ss_pred CCCCCCCCCC---------hHHHHHHHHHHHHHHHHhcC
Q 004368 719 LGAGHFSKSG---------RFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 719 ~~~gH~~~~~---------~~~~~~~~~~~~~fl~~~l~ 748 (758)
++.|++... ....-..+.+..+||.++++
T Consensus 198 -ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 198 -GAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred -CCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 788977532 12223335556889988875
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-15 Score=164.58 Aligned_cols=203 Identities=14% Similarity=0.155 Sum_probs=147.6
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+..+.|||||++|||+...++ ..+||++|+++|+..... ..+....+.||||| +|+|+....+ ..+||..++.+
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~--~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g--~~~Iy~~d~~~ 276 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQK--RPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG--NPEIYVMDLAS 276 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCC--CCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC--CceEEEEECCC
Confidence 567899999999999987665 478999999999876653 34444568999999 8888765432 35799999987
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccc-cceeeEEeecCCEEEEEEcC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-VGVDTAASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~~~~s~dg~~l~~~s~~ 349 (758)
+. ...+... ......+.|||||++|+|.++..+..+||++|+.+++ .+.++... ......|+|||+++++.+..
T Consensus 277 ~~--~~~lt~~--~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 277 RQ--LSRVTNH--PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AERVTFVGNYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred CC--eEEcccC--CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCCCccceEECCCCCEEEEEEcc
Confidence 63 2333322 2223457899999999999877777899999998887 66665322 12234599999999998876
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
++ .++|+.+|+++. ..+.+.....+. ...++++++.+++...+++...+++++++
T Consensus 352 ~~--~~~l~~~dl~tg-~~~~lt~~~~~~-~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 352 DG--NFHVAAQDLQRG-SVRILTDTSLDE-SPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CC--ceEEEEEECCCC-CEEEccCCCCCC-CceECCCCCEEEEEEecCCceEEEEEECC
Confidence 52 578999998763 333344332222 34677778889888888888888888876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-15 Score=165.10 Aligned_cols=252 Identities=13% Similarity=0.119 Sum_probs=168.7
Q ss_pred eEEECCCCCEEEEEEeCCCCe----EEEEEEEECCCCceeeccccC-cceeEEEecCC-e--EEEEEeCCCCCCceEEEE
Q 004368 195 CFQVSPDNKLVAYAEDTKGDE----IYTVYVIDIETGTPVGKPLVG-VTASVEWAGNE-A--LVYITMDEILRPDKAWLH 266 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e----~~~l~v~dl~~g~~~~~~~~~-~~~~~~wspDg-~--l~y~~~~~~~~~~~v~~~ 266 (758)
.+.++ +++|||+....+.+ .++||++|.+++..++++... ....+.||||| + ++|++...+ ..+||++
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g--~~~I~~~ 216 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLG--VPKIFLG 216 (428)
T ss_pred CCccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCC--CceEEEE
Confidence 34455 99999998765422 469999999999887765432 34568999999 5 677876442 3579999
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEE--eCCCCC--ceEEeeccccc--eeeEEeecC
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYL--DVSKPE--ELRVLTPRVVG--VDTAASHRG 340 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~--d~~~~~--~~~~l~~~~~~--~~~~~s~dg 340 (758)
++.++.. ..+..... ....+.|||||++|++.+...+..++|+. +++++. ..+.++....+ ..+.|||||
T Consensus 217 ~l~~g~~--~~lt~~~g--~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG 292 (428)
T PRK01029 217 SLENPAG--KKILALQG--NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG 292 (428)
T ss_pred ECCCCCc--eEeecCCC--CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC
Confidence 9988743 33332211 22357899999999998876666678874 555421 35666654322 345699999
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCCCCCc-ceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccC
Q 004368 341 NHFFITRRSDELFNSELLACPVDNTSE-TTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQG 419 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~ 419 (758)
++|+|.++.++ ..+||.++++..+. .+.+...........++++++.|++....+|..+++++++. ++..+.++
T Consensus 293 ~~Laf~s~~~g--~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~--~g~~~~Lt- 367 (428)
T PRK01029 293 TRLVFVSNKDG--RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA--TGRDYQLT- 367 (428)
T ss_pred CEEEEEECCCC--CceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECC--CCCeEEcc-
Confidence 99999998753 46899988753222 23344333333345678888899988887787889999887 33222222
Q ss_pred CceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 420 GKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 420 ~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
.....+..+.+++|++.++|.... .....+|.+|+.+++.
T Consensus 368 -------~~~~~~~~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 368 -------TSPENKESPSWAIDSLHLVYSAGN-SNESELYLISLITKKT 407 (428)
T ss_pred -------CCCCCccceEECCCCCEEEEEECC-CCCceEEEEECCCCCE
Confidence 111123446778899888876654 3447899999988774
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-17 Score=165.09 Aligned_cols=205 Identities=19% Similarity=0.192 Sum_probs=136.0
Q ss_pred EEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCC-CchhHHhcc--c----ccC
Q 004368 499 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGE-LGRQWYENG--K----FLK 571 (758)
Q Consensus 499 i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~-~G~~~~~~~--~----~~~ 571 (758)
+.+++..|++. ++.|.||++|+.+|.. +.....+..|+++||.|+++|+-++.. ......+.. . ...
T Consensus 1 ~~ay~~~P~~~----~~~~~Vvv~~d~~G~~--~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~ 74 (218)
T PF01738_consen 1 IDAYVARPEGG----GPRPAVVVIHDIFGLN--PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPR 74 (218)
T ss_dssp EEEEEEEETTS----SSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHS
T ss_pred CeEEEEeCCCC----CCCCEEEEEcCCCCCc--hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhh
Confidence 46788888753 6789999999988754 223334568899999999999865544 111111100 0 011
Q ss_pred CcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhcc
Q 004368 572 KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW 651 (758)
Q Consensus 572 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~ 651 (758)
......|+.+++++|.+++.++.+||+++|+|+||.++..++.+. +.++|+|+..|...
T Consensus 75 ~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~-------------------- 133 (218)
T PF01738_consen 75 PEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP-------------------- 133 (218)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS--------------------
T ss_pred HHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC--------------------
Confidence 124568889999999999888999999999999999999988876 68999999888000
Q ss_pred CCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCCh--
Q 004368 652 GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGR-- 729 (758)
Q Consensus 652 g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~-- 729 (758)
...+.....+++.| +|+++|++|+.++..+..++.++|++++.+.++.+|+ +++|++....
T Consensus 134 -------------~~~~~~~~~~~~~P-~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~---ga~HgF~~~~~~ 196 (218)
T PF01738_consen 134 -------------PPPPLEDAPKIKAP-VLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYP---GAGHGFANPSRP 196 (218)
T ss_dssp -------------GGGHHHHGGG--S--EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEET---T--TTTTSTTST
T ss_pred -------------CCcchhhhcccCCC-EeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECC---CCcccccCCCCc
Confidence 00111123334577 9999999999999999999999999999988888886 9999884322
Q ss_pred ----HHHHHHHHHHHHHHHHhc
Q 004368 730 ----FERLREAAFTYTFLMRAL 747 (758)
Q Consensus 730 ----~~~~~~~~~~~~fl~~~l 747 (758)
...-+...+..+||.++|
T Consensus 197 ~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 197 PYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp T--HHHHHHHHHHHHHHHCC--
T ss_pred ccCHHHHHHHHHHHHHHHHhcC
Confidence 223333555678887765
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-15 Score=164.45 Aligned_cols=245 Identities=12% Similarity=0.128 Sum_probs=171.4
Q ss_pred CCEEEEEEeCCCCe--EEEEEEEECCCCceeecccc-CcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEE
Q 004368 202 NKLVAYAEDTKGDE--IYTVYVIDIETGTPVGKPLV-GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDIC 277 (758)
Q Consensus 202 G~~lAy~~~~~G~e--~~~l~v~dl~~g~~~~~~~~-~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~ 277 (758)
..+|||..+..|.. ..+|+++|.+++....++.. .....+.||||| +|+|++...+ ..+||++++.++.. ..
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g~~--~~ 240 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANG--RPRVYLLDLETGQR--EL 240 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCC--CCEEEEEECCCCcE--EE
Confidence 56899998876643 67999999988877665432 335669999999 8999986533 35799999987632 33
Q ss_pred EeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc-ceeeEEeecCCEEEEEEcCCCCCCcE
Q 004368 278 LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSE 356 (758)
Q Consensus 278 v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~~ 356 (758)
+... +.....+.|||||+.|++.....+..+||++|++++. .+.++.... .....|+|||++|+|.+++.+ ..+
T Consensus 241 l~~~--~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g--~~~ 315 (435)
T PRK05137 241 VGNF--PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TTRLTDSPAIDTSPSYSPDGSQIVFESDRSG--SPQ 315 (435)
T ss_pred eecC--CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc-eEEccCCCCccCceeEcCCCCEEEEEECCCC--CCe
Confidence 3222 1223357899999999998777777899999999886 777775432 223569999999999988753 468
Q ss_pred EEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCC
Q 004368 357 LLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSE 436 (758)
Q Consensus 357 L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~ 436 (758)
||++++++ +..+.+...........++++++.+++.....+...+++++++ ++... .+. . ...+..++
T Consensus 316 Iy~~d~~g-~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~--~~~~~------~lt--~-~~~~~~p~ 383 (435)
T PRK05137 316 LYVMNADG-SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD--GSGER------ILT--S-GFLVEGPT 383 (435)
T ss_pred EEEEECCC-CCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC--CCceE------ecc--C-CCCCCCCe
Confidence 99999876 3334454433333334677788899888776676778888875 43221 121 1 11344567
Q ss_pred cccCCcEEEEEEecCCCC--CEEEEEECCCCcE
Q 004368 437 SVFSSRILRFHYSSLRTP--PSVYDYDMDMGIS 467 (758)
Q Consensus 437 ~~~d~~~l~~~~sS~~~P--~~i~~~d~~~~~~ 467 (758)
+++|++.++|........ ..+|.+|+.+++.
T Consensus 384 ~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 384 WAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred ECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 889999998877655443 5899999987764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=167.39 Aligned_cols=203 Identities=13% Similarity=0.097 Sum_probs=146.1
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+..++|||||++|||+...++ ..+||++|+.+|+....+ .++....++||||| +|+|+...+ ...+||..++.+
T Consensus 198 v~~p~wSPDG~~la~~s~~~~--~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~--g~~~Iy~~d~~~ 273 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESK--KPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRD--GNSQIYTVNADG 273 (427)
T ss_pred cccceEcCCCCEEEEEEccCC--CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccC--CCceEEEEECCC
Confidence 457899999999999987655 478999999999876653 44455668999999 888876543 245799988876
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccc-cceeeEEeecCCEEEEEEcC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-VGVDTAASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~~~~s~dg~~l~~~s~~ 349 (758)
+. ...+.. .. .....+.|||||++|++.++..+..+||.++++++. .+.++... ......|||||++|++.++.
T Consensus 274 ~~--~~~lt~-~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 274 SG--LRRLTQ-SS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred CC--cEECCC-CC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 53 233322 21 223357899999999998877777899999998776 55555322 12335699999999998876
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
++ .++|+++++++. ....++....+ ....++++++.|++.....|...+++++++
T Consensus 349 ~g--~~~I~v~d~~~g-~~~~lt~~~~~-~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 349 GG--AFKLYVQDLATG-QVTALTDTTRD-ESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred CC--cEEEEEEECCCC-CeEEccCCCCc-cCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 52 478999998763 33445433222 234667777889988888888888888775
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-16 Score=161.28 Aligned_cols=238 Identities=16% Similarity=0.127 Sum_probs=150.8
Q ss_pred eeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccccc
Q 004368 491 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 570 (758)
Q Consensus 491 ~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~ 570 (758)
+.+.||..+++.++.|.+ .+.|+|+++||.... ...|...+..|+++||.|+.+|+||+|...... ....
T Consensus 5 ~~~~~g~~l~~~~~~~~~-----~~~~~v~llHG~~~~--~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~~---~~~~ 74 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT-----YPKALVFISHGAGEH--SGRYEELAENISSLGILVFSHDHIGHGRSNGEK---MMID 74 (276)
T ss_pred eecCCCCEEEEEeccCCC-----CCCEEEEEeCCCccc--cchHHHHHHHHHhCCCEEEEccCCCCCCCCCcc---CCcC
Confidence 345699999998765532 356899999995433 344666777888899999999999998754310 0001
Q ss_pred CCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhc-------------cC
Q 004368 571 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT-------------ML 637 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~-------------~~ 637 (758)
.-...++|+...++++.+.. ..+++.++|+|+||.++..++.++|++++++|+.+|+.+.... ..
T Consensus 75 ~~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (276)
T PHA02857 75 DFGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFY 152 (276)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhC
Confidence 11123567777777765542 2468999999999999999999999999999999997652110 00
Q ss_pred CCCC-C-CCh----h---hhhcc-CCCC------CHHHHHHHHhc--CcccccCCCCCCeEEEeccCCCCCCCChHHHHH
Q 004368 638 DPTI-P-LTT----A---EWEEW-GDPW------KEEFYFYMKSY--SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKF 699 (758)
Q Consensus 638 ~~~~-~-~~~----~---~~~e~-g~p~------~~~~~~~l~~~--sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~ 699 (758)
.... . +.. . +...+ .+|. .......+... .....+.++++| +|++||++|..||+..+.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vliv~G~~D~i~~~~~~~~l 231 (276)
T PHA02857 153 PNKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTP-ILILQGTNNEISDVSGAYYF 231 (276)
T ss_pred CCCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCC-EEEEecCCCCcCChHHHHHH
Confidence 0000 0 000 0 00000 1110 00000111111 112456677898 99999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEecCCCCCCCCCChHH-HHHHHHHHHHHHHHhc
Q 004368 700 VAKLREMKTDDNILLFKCELGAGHFSKSGRFE-RLREAAFTYTFLMRAL 747 (758)
Q Consensus 700 ~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~-~~~~~~~~~~fl~~~l 747 (758)
++++.. ..++++++ ++||........ .-+-..++++||.++.
T Consensus 232 ~~~~~~---~~~~~~~~---~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 232 MQHANC---NREIKIYE---GAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred HHHccC---CceEEEeC---CCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 887643 34567776 999987644333 2333556789998763
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-14 Score=157.44 Aligned_cols=203 Identities=15% Similarity=0.129 Sum_probs=145.6
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+..+.|||||++|||+....+ ..+|+++|+++|+.... ..++....+.||||| +++|+....+ ..+||++++.+
T Consensus 206 v~~p~wSpDg~~la~~s~~~~--~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g--~~~Iy~~d~~~ 281 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERG--RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG--NPEIYVMDLGS 281 (433)
T ss_pred cccccCCCCCCEEEEEecCCC--CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC--CceEEEEECCC
Confidence 567899999999999987665 47899999999987655 334445568999999 7888765432 35799999987
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccc-cceeeEEeecCCEEEEEEcC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-VGVDTAASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~~~~s~dg~~l~~~s~~ 349 (758)
+. ...+... ......+.|||||++|++.++..+..+||++|+++++ .+.++... ......|||||++|++.+..
T Consensus 282 g~--~~~lt~~--~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~ 356 (433)
T PRK04922 282 RQ--LTRLTNH--FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-AERLTFQGNYNARASVSPDGKKIAMVHGS 356 (433)
T ss_pred CC--eEECccC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEECC
Confidence 63 2333221 1223357899999999999877777899999998876 66665322 22245699999999998765
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+ ..++|+.+++++ +....+.....+ .-..++++++.+++.....+...|++++++
T Consensus 357 ~--~~~~I~v~d~~~-g~~~~Lt~~~~~-~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 357 G--GQYRIAVMDLST-GSVRTLTPGSLD-ESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred C--CceeEEEEECCC-CCeEECCCCCCC-CCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 3 357899999876 333334433222 223566777888888877788888888776
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-15 Score=160.01 Aligned_cols=246 Identities=17% Similarity=0.176 Sum_probs=145.6
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhc
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 566 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~ 566 (758)
+...+...||.++......+. .+.|+||++||..+. ...|...+..|+++||.|+.+|+||+|.++......
T Consensus 31 ~~~~~~~~~g~~l~~~~~~~~------~~~~~vll~HG~~~~--~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~ 102 (330)
T PRK10749 31 EEAEFTGVDDIPIRFVRFRAP------HHDRVVVICPGRIES--YVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDP 102 (330)
T ss_pred cceEEEcCCCCEEEEEEccCC------CCCcEEEEECCccch--HHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCC
Confidence 445666778988777644332 235789999995322 122445556788999999999999999875422110
Q ss_pred ccc--cCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc--------
Q 004368 567 GKF--LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-------- 636 (758)
Q Consensus 567 ~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~-------- 636 (758)
... ..-..-++|+.+.++.+... .+..++.++|+|+||.++..++.++|+.++++|+.+|........
T Consensus 103 ~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~ 180 (330)
T PRK10749 103 HRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARRI 180 (330)
T ss_pred CcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHHH
Confidence 000 00112234455555554433 234789999999999999999999999999999999865321000
Q ss_pred ---C--CC----C----------CCCC-------hhhh----hcc-CCCCC-------HHHHHHHHh-cCcccccCCCCC
Q 004368 637 ---L--DP----T----------IPLT-------TAEW----EEW-GDPWK-------EEFYFYMKS-YSPVDNVKAQNY 677 (758)
Q Consensus 637 ---~--~~----~----------~~~~-------~~~~----~e~-g~p~~-------~~~~~~l~~-~sp~~~i~~~~~ 677 (758)
. .. . .+.. ...+ ..+ .+|.. ......+.. .....++.+++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 260 (330)
T PRK10749 181 LNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLAGAGDITT 260 (330)
T ss_pred HHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHhhccCCCC
Confidence 0 00 0 0000 0000 000 01100 000000100 011244566788
Q ss_pred CeEEEeccCCCCCCCChHHHHHHHHHHhcCC---CCceEEEEecCCCCCCCCCChH-HHHHHHHHHHHHHHHh
Q 004368 678 PHILVTAGLNDPRVMYSEPAKFVAKLREMKT---DDNILLFKCELGAGHFSKSGRF-ERLREAAFTYTFLMRA 746 (758)
Q Consensus 678 P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~~~~~fl~~~ 746 (758)
| +||+||++|..|++..+.+++++++.++. +.++++|+ ++||....... ..-.-..++.+||.++
T Consensus 261 P-~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~---gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 261 P-LLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIK---GAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred C-EEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeC---CCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 8 99999999999999999999999987653 34577776 99997543221 1222234467888764
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=171.46 Aligned_cols=134 Identities=16% Similarity=0.206 Sum_probs=107.7
Q ss_pred eeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC--CCC-ChHHHHHHHcCcEEEEEecCCCCCCchhHHhcc
Q 004368 491 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND--PAF-NSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG 567 (758)
Q Consensus 491 ~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~--~~~-~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~ 567 (758)
+++.||++|.+.++.|++. ++.|+||++|| ++.... ..+ ......|+++||+|+++|+||.|+++..+...
T Consensus 1 i~~~DG~~L~~~~~~P~~~----~~~P~Il~~~g-yg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~- 74 (550)
T TIGR00976 1 VPMRDGTRLAIDVYRPAGG----GPVPVILSRTP-YGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLL- 74 (550)
T ss_pred CcCCCCCEEEEEEEecCCC----CCCCEEEEecC-CCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEec-
Confidence 3578999999998888653 47899999997 333221 111 22346889999999999999999887654321
Q ss_pred cccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhc
Q 004368 568 KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 635 (758)
Q Consensus 568 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~ 635 (758)
.....+|+.++++|+.++.+.+ .+|+++|+|+||++++.++..+|+.++|+|+.+++.|+...
T Consensus 75 ----~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~ 137 (550)
T TIGR00976 75 ----GSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRD 137 (550)
T ss_pred ----CcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHh
Confidence 1457799999999999998876 79999999999999999999999999999999999887654
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-16 Score=163.45 Aligned_cols=215 Identities=20% Similarity=0.276 Sum_probs=140.9
Q ss_pred CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCC-----CCCh----HHHHHHHcCcEEEEEecCCCCCCchhHHh
Q 004368 495 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-----AFNS----SRLSLLDRGFIFAIAQIRGGGELGRQWYE 565 (758)
Q Consensus 495 dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~-----~~~~----~~~~l~~~G~~v~~~~~RG~g~~G~~~~~ 565 (758)
||++|.+.++.| +. ..+++.|+||..++ |+..... .... ....|+++||+|++.|.||.|+++..|..
T Consensus 1 DGv~L~adv~~P-~~-~~~~~~P~il~~tp-Y~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~ 77 (272)
T PF02129_consen 1 DGVRLAADVYRP-GA-DGGGPFPVILTRTP-YGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDP 77 (272)
T ss_dssp TS-EEEEEEEEE----TTSSSEEEEEEEES-STCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-T
T ss_pred CCCEEEEEEEec-CC-CCCCcccEEEEccC-cCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCcccc
Confidence 899999999999 43 45688999999877 4422100 0111 11239999999999999999998877654
Q ss_pred cccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCC-CCC-CC
Q 004368 566 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD-PTI-PL 643 (758)
Q Consensus 566 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~-~~~-~~ 643 (758)
. ..++.+|..++|+|+.++.+.| .|||++|.||+|+.+.+++.+.|...+|++..++..|+...... ... ..
T Consensus 78 ~-----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~ 151 (272)
T PF02129_consen 78 M-----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRL 151 (272)
T ss_dssp T-----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBC
T ss_pred C-----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcccc
Confidence 2 5677899999999999998875 79999999999999999999888899999999999887651110 000 00
Q ss_pred C-hhhh-------hccCC-C-CC----------------------------------HHHHHHHHhcCcccccCCCCCCe
Q 004368 644 T-TAEW-------EEWGD-P-WK----------------------------------EEFYFYMKSYSPVDNVKAQNYPH 679 (758)
Q Consensus 644 ~-~~~~-------~e~g~-p-~~----------------------------------~~~~~~l~~~sp~~~i~~~~~P~ 679 (758)
. ...| ..... + .. +..-+++.+.++..++.++++|
T Consensus 152 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP- 230 (272)
T PF02129_consen 152 GFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVP- 230 (272)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SE-
T ss_pred cchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCC-
Confidence 0 0011 00000 0 00 0011223444555556788898
Q ss_pred EEEeccCCCCCCCChHHHHHHHHHHhcC-CCCceEEEEecCCCCCC
Q 004368 680 ILVTAGLNDPRVMYSEPAKFVAKLREMK-TDDNILLFKCELGAGHF 724 (758)
Q Consensus 680 ~Li~~G~~D~~V~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~gH~ 724 (758)
+|+++|..|..+. .++.+.+++|++.+ .+.++++- ..+|+
T Consensus 231 ~l~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liig----pw~H~ 271 (272)
T PF02129_consen 231 VLIVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIG----PWTHG 271 (272)
T ss_dssp EEEEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEE----SESTT
T ss_pred EEEecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEe----CCCCC
Confidence 9999999997777 89999999999988 55566554 36664
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-15 Score=146.96 Aligned_cols=247 Identities=15% Similarity=0.120 Sum_probs=160.7
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHh
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 565 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~ 565 (758)
.....++..+|.++..-...|... .++..+|+++|| |+......|...+..|+..||.|+.+|++|+|.+..-
T Consensus 27 ~~~~~~~n~rG~~lft~~W~p~~~---~~pr~lv~~~HG-~g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl--- 99 (313)
T KOG1455|consen 27 YSESFFTNPRGAKLFTQSWLPLSG---TEPRGLVFLCHG-YGEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGL--- 99 (313)
T ss_pred eeeeeEEcCCCCEeEEEecccCCC---CCCceEEEEEcC-CcccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCCC---
Confidence 345567788998877665555432 256779999999 5666666788888899999999999999999965320
Q ss_pred cccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc---------
Q 004368 566 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM--------- 636 (758)
Q Consensus 566 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~--------- 636 (758)
.+.-..-...++|+.+-.+....+.--.-...+++|+||||.+++.++.+.|+.+.++|+.+|+.-+..-+
T Consensus 100 ~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~ 179 (313)
T KOG1455|consen 100 HAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISI 179 (313)
T ss_pred cccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHH
Confidence 00001112334555555555445443344689999999999999999999999999999999975432211
Q ss_pred ---CCCCCCCCh-hhhhccCCC--CCHHHHHHHHhcCc----------------------ccccCCCCCCeEEEeccCCC
Q 004368 637 ---LDPTIPLTT-AEWEEWGDP--WKEEFYFYMKSYSP----------------------VDNVKAQNYPHILVTAGLND 688 (758)
Q Consensus 637 ---~~~~~~~~~-~~~~e~g~p--~~~~~~~~l~~~sp----------------------~~~i~~~~~P~~Li~~G~~D 688 (758)
+..-+|... ..-.....+ .+++..+.+ ..+| ..|+.++..| +||+||+.|
T Consensus 180 l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~-~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvP-flilHG~dD 257 (313)
T KOG1455|consen 180 LTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKIL-RSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVP-FLILHGTDD 257 (313)
T ss_pred HHHHHHhCCceeecCCccccccccCCHHHHHHh-hcCCceecCCccHHHHHHHHHHHHHHHHhccccccc-EEEEecCCC
Confidence 000011000 000000111 233332222 2334 3677788998 999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCC--ChHHHHHHHHHHHHHHHHh
Q 004368 689 PRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS--GRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 689 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~ 746 (758)
.++.+.-++++++....+ +.++.+|+ +.-|.... .......-..++.+||.++
T Consensus 258 ~VTDp~~Sk~Lye~A~S~--DKTlKlYp---Gm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 258 KVTDPKVSKELYEKASSS--DKTLKLYP---GMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cccCcHHHHHHHHhccCC--CCceeccc---cHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 999999999999976544 34566676 88887542 3344444467889999875
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-15 Score=158.68 Aligned_cols=228 Identities=20% Similarity=0.191 Sum_probs=153.9
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCC-hHHH-HHHHcCcEEEEEecCCCCCCchhHHhccccc
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN-SSRL-SLLDRGFIFAIAQIRGGGELGRQWYENGKFL 570 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~-~~~~-~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~ 570 (758)
..++..+++.++.| .. ...++.|+|||+|||.......... .... .+...|+.|+.+|||-..+.
T Consensus 58 ~~~~~~~~~~~y~p-~~-~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~----------- 124 (312)
T COG0657 58 GPSGDGVPVRVYRP-DR-KAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH----------- 124 (312)
T ss_pred CCCCCceeEEEECC-CC-CCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------
Confidence 34555688888888 32 3346789999999987665544433 3343 45557999999999988764
Q ss_pred CCcChHhHHHHHHHHHHHcC---CCCCCcEEEEEeChhHHHHHHHHhhCCC----ceeEEEEcCCccchhhccCCCCC--
Q 004368 571 KKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVDVLTTMLDPTI-- 641 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~d~~~~~~~~~~-- 641 (758)
.-+..++|+.+++.|+.++. .+|+++|+++|+|+||.|++.++....+ ..++.++.+|.+|... . ..+.
T Consensus 125 ~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~-~~~~~~ 202 (312)
T COG0657 125 PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-S-AASLPG 202 (312)
T ss_pred CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-c-ccchhh
Confidence 22466799999999998874 5899999999999999999888776433 5689999999999764 1 1111
Q ss_pred -----CCChhhhh-----cc-CCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCC
Q 004368 642 -----PLTTAEWE-----EW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 710 (758)
Q Consensus 642 -----~~~~~~~~-----e~-g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~ 710 (758)
.+...... .| +...+... ...+|+..-.-...||++|++|+.|...+ +++.|+++|+++|+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~spl~~~~~~~lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~ 276 (312)
T COG0657 203 YGEADLLDAAAILAWFADLYLGAAPDRED----PEASPLASDDLSGLPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPV 276 (312)
T ss_pred cCCccccCHHHHHHHHHHHhCcCccccCC----CccCccccccccCCCCEEEEecCCCcchh--HHHHHHHHHHHcCCeE
Confidence 11111100 11 11111100 12455543321137889999999999888 9999999999999999
Q ss_pred ceEEEEecCCCCCCCCCCh-HHHHHHHHHHHHHHH
Q 004368 711 NILLFKCELGAGHFSKSGR-FERLREAAFTYTFLM 744 (758)
Q Consensus 711 ~~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~~fl~ 744 (758)
++..++ +..|.+.... ....+....+..|+.
T Consensus 277 ~~~~~~---g~~H~f~~~~~~~a~~~~~~~~~~l~ 308 (312)
T COG0657 277 ELRVYP---GMIHGFDLLTGPEARSALRQIAAFLR 308 (312)
T ss_pred EEEEeC---CcceeccccCcHHHHHHHHHHHHHHH
Confidence 887776 8889763221 233333344555655
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8e-14 Score=154.08 Aligned_cols=242 Identities=12% Similarity=0.088 Sum_probs=163.1
Q ss_pred CEEEEEEeCCC-CeEEEEEEEECCCCceeecccc-CcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEe
Q 004368 203 KLVAYAEDTKG-DEIYTVYVIDIETGTPVGKPLV-GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLY 279 (758)
Q Consensus 203 ~~lAy~~~~~G-~e~~~l~v~dl~~g~~~~~~~~-~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~ 279 (758)
++|||+....+ ...++|+++|.+++.....+.. .....++||||| +|+|++.... ..++|++++.++. ...+.
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g--~~~i~i~dl~~G~--~~~l~ 239 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGA--VRQVA 239 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCC--eEEcc
Confidence 88999987543 3367999999998876655332 235679999999 8999875432 3469999997763 23333
Q ss_pred eecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEEEEcCCCCCCcEEE
Q 004368 280 HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSELL 358 (758)
Q Consensus 280 ~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~ 358 (758)
.... ....+.|||||++|++.....+..+||++|+++++ .+.++..... ....|+|||++|+|.+++++ ..+||
T Consensus 240 ~~~~--~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g--~~~Iy 314 (429)
T PRK03629 240 SFPR--HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG--RPQVY 314 (429)
T ss_pred CCCC--CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEccCCCCCcCceEECCCCCEEEEEeCCCC--CceEE
Confidence 2211 22357899999999998766666789999999886 7777654322 34569999999999998753 46899
Q ss_pred EEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcc
Q 004368 359 ACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESV 438 (758)
Q Consensus 359 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~ 438 (758)
.+++++. ....+...........++++++.+++....++...+++++++ ++..+. +. .. +....+.++
T Consensus 315 ~~d~~~g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~--~g~~~~------Lt--~~-~~~~~p~~S 382 (429)
T PRK03629 315 KVNINGG-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA--TGGVQV------LT--DT-FLDETPSIA 382 (429)
T ss_pred EEECCCC-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC--CCCeEE------eC--CC-CCCCCceEC
Confidence 9998763 333444333222334567778899888877777788888876 332222 22 11 112345678
Q ss_pred cCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 439 FSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 439 ~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
+|+..+.|.... .....++.+++.++.
T Consensus 383 pDG~~i~~~s~~-~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 383 PNGTMVIYSSSQ-GMGSVLNLVSTDGRF 409 (429)
T ss_pred CCCCEEEEEEcC-CCceEEEEEECCCCC
Confidence 899888765543 223457788876554
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=147.02 Aligned_cols=185 Identities=17% Similarity=0.177 Sum_probs=127.2
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCC----CCchhHHhcccccCCcCh-------HhHHHHH
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGG----ELGRQWYENGKFLKKKNT-------FTDFIAC 582 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g----~~G~~~~~~~~~~~~~~~-------~~D~~~~ 582 (758)
.+.|+||++||..+. ...|......|...++.+.++.+||.. ..|..|+... .....+. ...+.+.
T Consensus 14 ~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~~~ 90 (232)
T PRK11460 14 PAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFIET 90 (232)
T ss_pred CCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHHHH
Confidence 457999999994333 233556666777777666666666632 2356776431 1111121 2334456
Q ss_pred HHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHH
Q 004368 583 AEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFY 662 (758)
Q Consensus 583 ~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~ 662 (758)
++++.++..+++++|+++|+|+||.+++.++.++|++++++++.++.+. .. +.
T Consensus 91 i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~--------~~------------~~------- 143 (232)
T PRK11460 91 VRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA--------SL------------PE------- 143 (232)
T ss_pred HHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc--------cc------------cc-------
Confidence 6777777778899999999999999999999889998888887666321 00 00
Q ss_pred HHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHH
Q 004368 663 MKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTF 742 (758)
Q Consensus 663 l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~f 742 (758)
.+ ..+.| +|++||.+|+.||++.+++++++|++.+.+++.+.|+ +.||.+.. + +..+..+|
T Consensus 144 ----~~-----~~~~p-vli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~---~~gH~i~~---~---~~~~~~~~ 204 (232)
T PRK11460 144 ----TA-----PTATT-IHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVE---DLGHAIDP---R---LMQFALDR 204 (232)
T ss_pred ----cc-----cCCCc-EEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEEC---CCCCCCCH---H---HHHHHHHH
Confidence 00 11355 9999999999999999999999999999877777775 99998742 2 23334567
Q ss_pred HHHhc
Q 004368 743 LMRAL 747 (758)
Q Consensus 743 l~~~l 747 (758)
|.+.|
T Consensus 205 l~~~l 209 (232)
T PRK11460 205 LRYTV 209 (232)
T ss_pred HHHHc
Confidence 76665
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-13 Score=151.55 Aligned_cols=240 Identities=15% Similarity=0.143 Sum_probs=161.9
Q ss_pred CEEEEEEeCCCCeEEEEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEee
Q 004368 203 KLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYH 280 (758)
Q Consensus 203 ~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~ 280 (758)
.+|||....++ .++|+++|.++....+.+ .......++||||| +|+|++... ...+||++++.++. ...+..
T Consensus 164 ~~iayv~~~~~--~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~--~~~l~~ 237 (427)
T PRK02889 164 TRIAYVIKTGN--RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFES--KKPVVYVHDLATGR--RRVVAN 237 (427)
T ss_pred cEEEEEEccCC--ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccC--CCcEEEEEECCCCC--EEEeec
Confidence 67999986544 578999999776655542 23345669999999 899987643 23469999998773 233322
Q ss_pred ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc-ceeeEEeecCCEEEEEEcCCCCCCcEEEE
Q 004368 281 EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSELLA 359 (758)
Q Consensus 281 ~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~~L~~ 359 (758)
.. .....+.|||||+.|++..+..+..+||.+|++++. .+.++.... .....|+|||++|+|.+++.+ ..+||.
T Consensus 238 ~~--g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g--~~~Iy~ 312 (427)
T PRK02889 238 FK--GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG--APQIYR 312 (427)
T ss_pred CC--CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCC--CcEEEE
Confidence 11 223367899999999998877777899999998776 777765432 234569999999999988753 468999
Q ss_pred EeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCccc
Q 004368 360 CPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVF 439 (758)
Q Consensus 360 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~ 439 (758)
+++++. ..+.++.......-..++++++++++....++...+++++++. +..+. +. ... ....+.+++
T Consensus 313 ~~~~~g-~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~--g~~~~------lt--~~~-~~~~p~~sp 380 (427)
T PRK02889 313 MPASGG-AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT--GQVTA------LT--DTT-RDESPSFAP 380 (427)
T ss_pred EECCCC-ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC--CCeEE------cc--CCC-CccCceECC
Confidence 998652 3333443322222346777888998887777777888998873 32222 21 111 123467888
Q ss_pred CCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 440 SSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 440 d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
|+..++|....-. -..+|.++..++.
T Consensus 381 dg~~l~~~~~~~g-~~~l~~~~~~g~~ 406 (427)
T PRK02889 381 NGRYILYATQQGG-RSVLAAVSSDGRI 406 (427)
T ss_pred CCCEEEEEEecCC-CEEEEEEECCCCc
Confidence 9999888765433 3568888875443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-13 Score=152.27 Aligned_cols=243 Identities=12% Similarity=0.133 Sum_probs=163.4
Q ss_pred CCEEEEEEeCC--CCeEEEEEEEECCCCceeeccc-cCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEE
Q 004368 202 NKLVAYAEDTK--GDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDIC 277 (758)
Q Consensus 202 G~~lAy~~~~~--G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~ 277 (758)
+++|||+.... +...++|+++|.+++....++. ......++||||| .|+|++... ...+||++++.++. ...
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~--~~~~l~~~dl~~g~--~~~ 242 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER--GRSAIYVQDLATGQ--REL 242 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC--CCcEEEEEECCCCC--EEE
Confidence 56788986543 2346899999998877665532 3335668999999 899987643 24579999997763 333
Q ss_pred EeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc-ceeeEEeecCCEEEEEEcCCCCCCcE
Q 004368 278 LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSE 356 (758)
Q Consensus 278 v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~~ 356 (758)
+... +.....+.|||||++|++.....+..+||++|+++++ .+.++.... .....|+|||++|+|.+++.+ ..+
T Consensus 243 l~~~--~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g--~~~ 317 (433)
T PRK04922 243 VASF--RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG--RPQ 317 (433)
T ss_pred eccC--CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCC--Cce
Confidence 3222 1223357899999999988776667899999999887 677765432 234569999999999998763 468
Q ss_pred EEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCC
Q 004368 357 LLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSE 436 (758)
Q Consensus 357 L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~ 436 (758)
||.+++++. ..+.++.......-..++++++.+++....++...++++++. ++..+.++.. . ....+.
T Consensus 318 iy~~dl~~g-~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~--~g~~~~Lt~~--------~-~~~~p~ 385 (433)
T PRK04922 318 IYRVAASGG-SAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS--TGSVRTLTPG--------S-LDESPS 385 (433)
T ss_pred EEEEECCCC-CeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC--CCCeEECCCC--------C-CCCCce
Confidence 999998763 333444333222234677788888887766666788899886 3322222211 1 123456
Q ss_pred cccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 437 SVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 437 ~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
+++|++.+.|.... ..-..+|.+++.++.
T Consensus 386 ~spdG~~i~~~s~~-~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 386 FAPNGSMVLYATRE-GGRGVLAAVSTDGRV 414 (433)
T ss_pred ECCCCCEEEEEEec-CCceEEEEEECCCCc
Confidence 78899888776654 233579999886654
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=139.81 Aligned_cols=207 Identities=19% Similarity=0.180 Sum_probs=142.9
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
+-.||++||-.|+.. ........|.++||.|.+|++||+|-.+.++..-+...| ++|+.++.++|.++|+ +
T Consensus 15 ~~AVLllHGFTGt~~--Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~ 85 (243)
T COG1647 15 NRAVLLLHGFTGTPR--DVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---D 85 (243)
T ss_pred CEEEEEEeccCCCcH--HHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---C
Confidence 378999999444332 244555688889999999999999988877766555544 5899999999999998 7
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCC-----hhhhhccCCCCCHHHHHHHHhcC--c
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLT-----TAEWEEWGDPWKEEFYFYMKSYS--P 668 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~-----~~~~~e~g~p~~~~~~~~l~~~s--p 668 (758)
.|++.|.|+||.+++.++.++| .+++|..++.+.+... ...+. ..++..+-....+..-+.+.++. |
T Consensus 86 eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~----~~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~ 159 (243)
T COG1647 86 EIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSW----RIIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTP 159 (243)
T ss_pred eEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccc----hhhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcch
Confidence 9999999999999999999998 4555554443332110 11110 01222333332233333344444 2
Q ss_pred --------------ccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHH
Q 004368 669 --------------VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLR 734 (758)
Q Consensus 669 --------------~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~ 734 (758)
..++..+..| +||+.|.+|+.||...+..++..+... +.++.+|+ +.||....+... -.
T Consensus 160 ~~~~~~~~~~i~~~~~~~~~I~~p-t~vvq~~~D~mv~~~sA~~Iy~~v~s~--~KeL~~~e---~SgHVIt~D~Er-d~ 232 (243)
T COG1647 160 MTTTAQLKKLIKDARRSLDKIYSP-TLVVQGRQDEMVPAESANFIYDHVESD--DKELKWLE---GSGHVITLDKER-DQ 232 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccc-hhheecccCCCCCHHHHHHHHHhccCC--cceeEEEc---cCCceeecchhH-HH
Confidence 3566677888 999999999999999999999988654 35677887 999987644322 22
Q ss_pred HHHHHHHHHH
Q 004368 735 EAAFTYTFLM 744 (758)
Q Consensus 735 ~~~~~~~fl~ 744 (758)
-..+++.||.
T Consensus 233 v~e~V~~FL~ 242 (243)
T COG1647 233 VEEDVITFLE 242 (243)
T ss_pred HHHHHHHHhh
Confidence 2234788885
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-13 Score=149.18 Aligned_cols=243 Identities=11% Similarity=0.087 Sum_probs=162.1
Q ss_pred CCEEEEEEeCCCC-eEEEEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEE
Q 004368 202 NKLVAYAEDTKGD-EIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICL 278 (758)
Q Consensus 202 G~~lAy~~~~~G~-e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v 278 (758)
..+|||.....+. ..++|+++|.++.....++ .......+.||||| +|+|++... ...+||++++.++. ...+
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~--~~~l 257 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQV--REKV 257 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC--CCcEEEEEECCCCC--eEEe
Confidence 3678888765543 3579999999887665442 23335569999999 899987653 23579999998763 3333
Q ss_pred eeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc-ceeeEEeecCCEEEEEEcCCCCCCcEE
Q 004368 279 YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSEL 357 (758)
Q Consensus 279 ~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~~L 357 (758)
.... .....+.|||||++|++.....+..+||++|+++++ .+.++.... .....|+|||++|+|.++.++ +.+|
T Consensus 258 t~~~--g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g--~~~I 332 (448)
T PRK04792 258 TSFP--GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGG--KPQI 332 (448)
T ss_pred cCCC--CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCC--CceE
Confidence 3222 122357899999999998777777899999999887 777765432 234569999999999988753 4689
Q ss_pred EEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCc
Q 004368 358 LACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSES 437 (758)
Q Consensus 358 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~ 437 (758)
|.+++++. ....++.......-..++++++.+++....++..++++++++ ++....++.. . .....++
T Consensus 333 y~~dl~~g-~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~--~g~~~~lt~~--------~-~d~~ps~ 400 (448)
T PRK04792 333 YRVNLASG-KVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE--TGAMQVLTST--------R-LDESPSV 400 (448)
T ss_pred EEEECCCC-CEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECC--CCCeEEccCC--------C-CCCCceE
Confidence 99998763 333444322222224677788899888777777778878776 3322222211 1 1123467
Q ss_pred ccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 438 VFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 438 ~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
+++++.++|+...- .-..+|.++..++.
T Consensus 401 spdG~~I~~~~~~~-g~~~l~~~~~~G~~ 428 (448)
T PRK04792 401 APNGTMVIYSTTYQ-GKQVLAAVSIDGRF 428 (448)
T ss_pred CCCCCEEEEEEecC-CceEEEEEECCCCc
Confidence 88898887766432 33468888875544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-13 Score=148.75 Aligned_cols=199 Identities=13% Similarity=0.080 Sum_probs=134.8
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+..+.|||||++|||+...++ ..+|+++|+.+|+.... ...+....++||||| +|+|+...++ ..+||..++.+
T Consensus 206 v~~p~wSPDG~~la~~s~~~~--~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g--~~~Iy~~d~~~ 281 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENK--KSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDG--VLNIYVMGANG 281 (429)
T ss_pred cccceEcCCCCEEEEEEecCC--CcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCC--cEEEEEEECCC
Confidence 567899999999999987544 57899999999876544 344444568999999 7888764332 34689888876
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSD 350 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~ 350 (758)
+. ...+.. . ......+.|||||++|++.++..+..+||.++..++. .+.+... +....|+|||++|++.+.
T Consensus 282 ~~--~~~lt~-~-~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-~~~l~~~--~~~~~~SpDG~~ia~~~~-- 352 (429)
T PRK01742 282 GT--PSQLTS-G-AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-ASLVGGR--GYSAQISADGKTLVMING-- 352 (429)
T ss_pred CC--eEeecc-C-CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEecCC--CCCccCCCCCCEEEEEcC--
Confidence 53 233322 2 2223468899999999998877777899999997765 4444322 223349999999988754
Q ss_pred CCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCC
Q 004368 351 ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 351 ~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
..++.+|+.+. ....+.... ...-..++++++.+++...+++...+++++.+ |.
T Consensus 353 ----~~i~~~Dl~~g-~~~~lt~~~-~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~--G~ 406 (429)
T PRK01742 353 ----DNVVKQDLTSG-STEVLSSTF-LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD--GR 406 (429)
T ss_pred ----CCEEEEECCCC-CeEEecCCC-CCCCceECCCCCEEEEEEcCCCceEEEEEECC--CC
Confidence 24777888653 323333222 21223566777788877766666566666655 55
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-13 Score=149.16 Aligned_cols=244 Identities=10% Similarity=0.121 Sum_probs=162.8
Q ss_pred CCCEEEEEEeCC--CCeEEEEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcE
Q 004368 201 DNKLVAYAEDTK--GDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDI 276 (758)
Q Consensus 201 DG~~lAy~~~~~--G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~ 276 (758)
..++|||..... +++.++|+++|.+++...... .......+.||||| +|+|++... ...+||++++.++. ..
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~--~~ 236 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGR--RE 236 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCC--EE
Confidence 566799986543 345789999999988765542 22334668999999 899987653 23479999998773 23
Q ss_pred EEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc-ceeeEEeecCCEEEEEEcCCCCCCc
Q 004368 277 CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNS 355 (758)
Q Consensus 277 ~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~ 355 (758)
.+.... .....+.|||||++|++.....+..+||++|++++. .+.++.... .....|+|||++++|.+++++ ..
T Consensus 237 ~l~~~~--g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g--~~ 311 (430)
T PRK00178 237 QITNFE--GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG--KP 311 (430)
T ss_pred EccCCC--CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCC--Cc
Confidence 333222 122357899999999998877677899999999886 777765432 234569999999999988763 46
Q ss_pred EEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCC
Q 004368 356 ELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPS 435 (758)
Q Consensus 356 ~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~ 435 (758)
+||.+++++. ..+.++..........++++++.+++....++...|+++++.. +..+.+ . ..... ...
T Consensus 312 ~iy~~d~~~g-~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t--g~~~~l------t--~~~~~-~~p 379 (430)
T PRK00178 312 QIYKVNVNGG-RAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR--GSVRIL------T--DTSLD-ESP 379 (430)
T ss_pred eEEEEECCCC-CEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC--CCEEEc------c--CCCCC-CCc
Confidence 8999998763 3333443322223346777888998888777766788888773 322222 2 11111 234
Q ss_pred CcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 436 ESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 436 ~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.+++++..+.|+...- .-..+|.++..++.
T Consensus 380 ~~spdg~~i~~~~~~~-g~~~l~~~~~~g~~ 409 (430)
T PRK00178 380 SVAPNGTMLIYATRQQ-GRGVLMLVSINGRV 409 (430)
T ss_pred eECCCCCEEEEEEecC-CceEEEEEECCCCc
Confidence 6788898887765432 22458888876544
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=150.09 Aligned_cols=244 Identities=15% Similarity=0.077 Sum_probs=150.7
Q ss_pred eeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHH
Q 004368 485 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 564 (758)
Q Consensus 485 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~ 564 (758)
......+...+|..++.....|... .+.|+||++||..+.. ..|...+..|+++||.|+.+|+||+|.....+.
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~~p~~~----~~~~~Vl~lHG~~~~~--~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~ 182 (395)
T PLN02652 109 RWATSLFYGARRNALFCRSWAPAAG----EMRGILIIIHGLNEHS--GRYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHG 182 (395)
T ss_pred eEEEEEEECCCCCEEEEEEecCCCC----CCceEEEEECCchHHH--HHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCC
Confidence 3455566777888888877666432 3468999999964432 225556678888999999999999987643211
Q ss_pred hcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCC---ceeEEEEcCCccchhhcc-----
Q 004368 565 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAVPFVDVLTTM----- 636 (758)
Q Consensus 565 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~~~~d~~~~~----- 636 (758)
.........+|+.++++++..+. +..++.++|+|+||.++..++. +|+ .++++|+.+|.+++....
T Consensus 183 ---~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~~ 256 (395)
T PLN02652 183 ---YVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVGA 256 (395)
T ss_pred ---CCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHHH
Confidence 00111123467888888887542 2347999999999999987665 564 789999999986533110
Q ss_pred -------CCCCC----------CCChh--h-hhccCCCC-------CHHHHHHHHhcC-cccccCCCCCCeEEEeccCCC
Q 004368 637 -------LDPTI----------PLTTA--E-WEEWGDPW-------KEEFYFYMKSYS-PVDNVKAQNYPHILVTAGLND 688 (758)
Q Consensus 637 -------~~~~~----------~~~~~--~-~~e~g~p~-------~~~~~~~l~~~s-p~~~i~~~~~P~~Li~~G~~D 688 (758)
..+.. +.... . ...+.+|. ....+..++... ...++.++++| +||+||.+|
T Consensus 257 ~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vP-vLIi~G~~D 335 (395)
T PLN02652 257 VAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVP-FMVLHGTAD 335 (395)
T ss_pred HHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCC-EEEEEeCCC
Confidence 00000 00000 0 00111110 000011111100 12345667898 999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCC--ChHHHHHHHHHHHHHHHHhcCC
Q 004368 689 PRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS--GRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 689 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
..||+.++.++++++... ..++.+++ +++|.... .+.+.+ .++.+||..+++.
T Consensus 336 ~vvp~~~a~~l~~~~~~~--~k~l~~~~---ga~H~l~~e~~~e~v~---~~I~~FL~~~~~~ 390 (395)
T PLN02652 336 RVTDPLASQDLYNEAASR--HKDIKLYD---GFLHDLLFEPEREEVG---RDIIDWMEKRLDL 390 (395)
T ss_pred CCCCHHHHHHHHHhcCCC--CceEEEEC---CCeEEeccCCCHHHHH---HHHHHHHHHHhhc
Confidence 999999999999987543 34566665 88997532 233333 3367899998863
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.1e-14 Score=149.08 Aligned_cols=242 Identities=16% Similarity=0.158 Sum_probs=141.9
Q ss_pred EEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcc
Q 004368 488 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG 567 (758)
Q Consensus 488 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~ 567 (758)
+..++..||..+.......+. ...+.|+||++||..+..........+..|.++||.|+++|+||+|+.......
T Consensus 33 ~~~~~~~dg~~~~l~w~~~~~---~~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~-- 107 (324)
T PRK10985 33 WQRLELPDGDFVDLAWSEDPA---QARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHR-- 107 (324)
T ss_pred eeEEECCCCCEEEEecCCCCc---cCCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcc--
Confidence 344567788777654322111 124579999999965543332223345678889999999999998865422111
Q ss_pred cccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCc--eeEEEEcCCccchhhcc--CC-----
Q 004368 568 KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL--FKAAVAAVPFVDVLTTM--LD----- 638 (758)
Q Consensus 568 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~--f~a~v~~~~~~d~~~~~--~~----- 638 (758)
.......+|+.++++++.++. ...++.++|+|+||.+++.++.++++. ++++|+.++..|+.... ++
T Consensus 108 --~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~~ 183 (324)
T PRK10985 108 --IYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFSR 183 (324)
T ss_pred --eECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHHH
Confidence 111234689999999998763 246799999999999888777776543 67777666655532100 00
Q ss_pred ----------------------CCCCC---------Chhhhhcc-CCC--CCHHHHHHHHhcCcccccCCCCCCeEEEec
Q 004368 639 ----------------------PTIPL---------TTAEWEEW-GDP--WKEEFYFYMKSYSPVDNVKAQNYPHILVTA 684 (758)
Q Consensus 639 ----------------------~~~~~---------~~~~~~e~-g~p--~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~ 684 (758)
...+. +..+|.+. -.+ .-....+++...++...++++++| +|+++
T Consensus 184 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~~P-~lii~ 262 (324)
T PRK10985 184 VYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQIRKP-TLIIH 262 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCCCCC-EEEEe
Confidence 00000 00111100 011 011123344455666677788898 99999
Q ss_pred cCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCC-----hHHHHHHHHHHHHHHHHhcC
Q 004368 685 GLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG-----RFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 685 G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~-----~~~~~~~~~~~~~fl~~~l~ 748 (758)
|++|+.+++.....+.+ .....++++++ ++||...-. ....+++. +.+||...++
T Consensus 263 g~~D~~~~~~~~~~~~~----~~~~~~~~~~~---~~GH~~~~~g~~~~~~~w~~~~--~~~~~~~~~~ 322 (324)
T PRK10985 263 AKDDPFMTHEVIPKPES----LPPNVEYQLTE---HGGHVGFVGGTLLKPQMWLEQR--IPDWLTTYLE 322 (324)
T ss_pred cCCCCCCChhhChHHHH----hCCCeEEEECC---CCCceeeCCCCCCCCCccHHHH--HHHHHHHhhc
Confidence 99999998765554422 22233444444 899965321 11233333 6788877654
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-15 Score=148.40 Aligned_cols=187 Identities=20% Similarity=0.226 Sum_probs=123.3
Q ss_pred EEEecCCCccCCCCCCC-hHHHHHHH-cCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHc---CCCC
Q 004368 519 LLYGYGSYEICNDPAFN-SSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN---CYCT 593 (758)
Q Consensus 519 vl~~hGg~~~~~~~~~~-~~~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d 593 (758)
||++|||.......... .....+++ +|++|+++|||-..+. .-+..++|+.++++|+.++ ...|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~-----------~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEA-----------PFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTS-----------STTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccccc-----------cccccccccccceeeecccccccccc
Confidence 78999987665444333 34456775 8999999999976553 2346789999999999988 3478
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCC----ceeEEEEcCCccchhhcc---------CCCCCCCChhhh----hccCCCCC
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVDVLTTM---------LDPTIPLTTAEW----EEWGDPWK 656 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~d~~~~~---------~~~~~~~~~~~~----~e~g~p~~ 656 (758)
+++|+++|.|+||.|++.++.+..+ ..+++++.+|++|+.... ......+..... ..+-...+
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFWKLYLPGSD 149 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHHHHHHSTGG
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999888875332 489999999998871110 000011111100 11100000
Q ss_pred HHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCC
Q 004368 657 EEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 657 ~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
.+ -...||+..-.....||++|++|+.|..+ .++.+|+++|++.|+++++++++ +.+|.+
T Consensus 150 ~~----~~~~sp~~~~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~---g~~H~f 209 (211)
T PF07859_consen 150 RD----DPLASPLNASDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYP---GMPHGF 209 (211)
T ss_dssp TT----STTTSGGGSSCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEET---TEETTG
T ss_pred cc----ccccccccccccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEEC---CCeEEe
Confidence 00 01356665511226899999999999765 59999999999999998888886 889964
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-14 Score=129.74 Aligned_cols=234 Identities=18% Similarity=0.140 Sum_probs=160.5
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHH-HHHHcCcEEEEEecCCCCCCch
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRL-SLLDRGFIFAIAQIRGGGELGR 561 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~-~l~~~G~~v~~~~~RG~g~~G~ 561 (758)
++.-+++...+.|..++.++++... .+.|++++.||.-|... .+...+. .+.+.+..|++++|||-|..-.
T Consensus 51 n~pye~i~l~T~D~vtL~a~~~~~E------~S~pTlLyfh~NAGNmG--hr~~i~~~fy~~l~mnv~ivsYRGYG~S~G 122 (300)
T KOG4391|consen 51 NMPYERIELRTRDKVTLDAYLMLSE------SSRPTLLYFHANAGNMG--HRLPIARVFYVNLKMNVLIVSYRGYGKSEG 122 (300)
T ss_pred CCCceEEEEEcCcceeEeeeeeccc------CCCceEEEEccCCCccc--chhhHHHHHHHHcCceEEEEEeeccccCCC
Confidence 4456889999999999999987622 36899999999554332 2333333 5567799999999998775433
Q ss_pred hHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCC
Q 004368 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI 641 (758)
Q Consensus 562 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~ 641 (758)
.-.+.|. ..|-.++++||..+...|..+|.++|.|.||..+.++++...++..|+|+..-|+.+...+..--.
T Consensus 123 spsE~GL-------~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~ 195 (300)
T KOG4391|consen 123 SPSEEGL-------KLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVF 195 (300)
T ss_pred Cccccce-------eccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheec
Confidence 3222222 368899999999999999999999999999999999999999999999999988776443221111
Q ss_pred CCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCC
Q 004368 642 PLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 721 (758)
Q Consensus 642 ~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 721 (758)
|+.......| .++ ..++.+..+.+-+.| .|++.|..|..|||-+-+++++.--... .++..|| ++
T Consensus 196 p~~~k~i~~l-------c~k--n~~~S~~ki~~~~~P-~LFiSGlkDelVPP~~Mr~Ly~~c~S~~--Krl~eFP---~g 260 (300)
T KOG4391|consen 196 PFPMKYIPLL-------CYK--NKWLSYRKIGQCRMP-FLFISGLKDELVPPVMMRQLYELCPSRT--KRLAEFP---DG 260 (300)
T ss_pred cchhhHHHHH-------HHH--hhhcchhhhccccCc-eEEeecCccccCCcHHHHHHHHhCchhh--hhheeCC---CC
Confidence 2111100100 111 123444455555788 9999999999999999999988754433 2345565 88
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 722 GHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 722 gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
.|.-..-....++. +.+||.+....
T Consensus 261 tHNDT~i~dGYfq~---i~dFlaE~~~~ 285 (300)
T KOG4391|consen 261 THNDTWICDGYFQA---IEDFLAEVVKS 285 (300)
T ss_pred ccCceEEeccHHHH---HHHHHHHhccC
Confidence 89543222222322 34688776553
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.7e-14 Score=147.20 Aligned_cols=239 Identities=19% Similarity=0.220 Sum_probs=139.9
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchh
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~ 562 (758)
.+..+++.++-.+ ..|++++..|+. +++.|+||++-| ..+-....+......|+.+|++++.+|.+|.|+.. .
T Consensus 162 ~~~i~~v~iP~eg-~~I~g~LhlP~~----~~p~P~VIv~gG-lDs~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~-~ 234 (411)
T PF06500_consen 162 DYPIEEVEIPFEG-KTIPGYLHLPSG----EKPYPTVIVCGG-LDSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESP-K 234 (411)
T ss_dssp SSEEEEEEEEETT-CEEEEEEEESSS----SS-EEEEEEE---TTS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGT-T
T ss_pred CCCcEEEEEeeCC-cEEEEEEEcCCC----CCCCCEEEEeCC-cchhHHHHHHHHHHHHHhCCCEEEEEccCCCcccc-c
Confidence 5667888888654 789999887764 368899988744 33222221212223578899999999999998742 2
Q ss_pred HHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccc-hhhc-cCCCC
Q 004368 563 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD-VLTT-MLDPT 640 (758)
Q Consensus 563 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d-~~~~-~~~~~ 640 (758)
|. . .+..-.=..++++||.+.+++|.+||+++|.|+||+.+..++..++++++|+|+..|+++ ++.- .....
T Consensus 235 ~~-----l-~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~~ 308 (411)
T PF06500_consen 235 WP-----L-TQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQR 308 (411)
T ss_dssp T------S--S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHTT
T ss_pred CC-----C-CcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHhc
Confidence 21 1 111112345789999999999999999999999999999999877889999998888643 3221 00112
Q ss_pred CCCChhh-h-hccCCC--CCHHHHHHHHhcCcccc--c--CCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCce
Q 004368 641 IPLTTAE-W-EEWGDP--WKEEFYFYMKSYSPVDN--V--KAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 712 (758)
Q Consensus 641 ~~~~~~~-~-~e~g~p--~~~~~~~~l~~~sp~~~--i--~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~ 712 (758)
.|..... + ...|-. .+......+..+|-..+ + ++..+| ||.+.|.+|+.+|.++..-++. .+.+.+.
T Consensus 309 ~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~p-lL~i~~~~D~v~P~eD~~lia~----~s~~gk~ 383 (411)
T PF06500_consen 309 VPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTP-LLAINGEDDPVSPIEDSRLIAE----SSTDGKA 383 (411)
T ss_dssp S-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS--EEEEEETT-SSS-HHHHHHHHH----TBTT-EE
T ss_pred CCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcc-eEEeecCCCCCCCHHHHHHHHh----cCCCCce
Confidence 3321111 1 234533 33344455677776442 2 344777 9999999999999877754433 3445556
Q ss_pred EEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 004368 713 LLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 713 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 747 (758)
..++. +.=|. +..+. +..++.||.+.|
T Consensus 384 ~~~~~--~~~~~---gy~~a---l~~~~~Wl~~~l 410 (411)
T PF06500_consen 384 LRIPS--KPLHM---GYPQA---LDEIYKWLEDKL 410 (411)
T ss_dssp EEE-S--SSHHH---HHHHH---HHHHHHHHHHHH
T ss_pred eecCC--Ccccc---chHHH---HHHHHHHHHHhc
Confidence 66662 22242 12222 344689998765
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-13 Score=148.13 Aligned_cols=243 Identities=16% Similarity=0.175 Sum_probs=144.4
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHh
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 565 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~ 565 (758)
.++..+...||..+.+..+.+... ......|+||++||..+.+....+......++++||.|+++|+||+|+....
T Consensus 71 ~~re~l~~~DG~~~~ldw~~~~~~-~~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~--- 146 (388)
T PLN02511 71 YRRECLRTPDGGAVALDWVSGDDR-ALPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVT--- 146 (388)
T ss_pred eeEEEEECCCCCEEEEEecCcccc-cCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC---
Confidence 355567778998887654432211 1223469999999976654432122344566789999999999999875321
Q ss_pred cccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCc--eeEEEEcCCccchhhcc--CCCCC
Q 004368 566 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL--FKAAVAAVPFVDVLTTM--LDPTI 641 (758)
Q Consensus 566 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~--f~a~v~~~~~~d~~~~~--~~~~~ 641 (758)
..........+|+.+++++|..+. ...++.++|+|+||.+++..+.++|+. +.++++.++..|+.... .....
T Consensus 147 -~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~~ 223 (388)
T PLN02511 147 -TPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKGF 223 (388)
T ss_pred -CcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhccH
Confidence 011112344689999999998753 236899999999999999999999986 66666555544431000 00000
Q ss_pred --------------------------C-----------CChhhhhc------cCCCCCHHHHHHHHhcCcccccCCCCCC
Q 004368 642 --------------------------P-----------LTTAEWEE------WGDPWKEEFYFYMKSYSPVDNVKAQNYP 678 (758)
Q Consensus 642 --------------------------~-----------~~~~~~~e------~g~p~~~~~~~~l~~~sp~~~i~~~~~P 678 (758)
+ .+..++.+ +|.. ..+ +++...|+...+.++++|
T Consensus 224 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~-~~~--~yy~~~s~~~~L~~I~vP 300 (388)
T PLN02511 224 NNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFK-SVD--AYYSNSSSSDSIKHVRVP 300 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCC-CHH--HHHHHcCchhhhccCCCC
Confidence 0 00000100 0111 111 123456677788889998
Q ss_pred eEEEeccCCCCCCCChHH-HHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHH------HHHHHHHHHHHHHHhcC
Q 004368 679 HILVTAGLNDPRVMYSEP-AKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFE------RLREAAFTYTFLMRALS 748 (758)
Q Consensus 679 ~~Li~~G~~D~~V~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~------~~~~~~~~~~fl~~~l~ 748 (758)
+||++|.+|+.+|+... ..+++ .....++++++ ++||........ .+++. +.+||.....
T Consensus 301 -tLiI~g~dDpi~p~~~~~~~~~~----~~p~~~l~~~~---~gGH~~~~E~p~~~~~~~w~~~~--i~~Fl~~~~~ 367 (388)
T PLN02511 301 -LLCIQAANDPIAPARGIPREDIK----ANPNCLLIVTP---SGGHLGWVAGPEAPFGAPWTDPV--VMEFLEALEE 367 (388)
T ss_pred -eEEEEcCCCCcCCcccCcHhHHh----cCCCEEEEECC---CcceeccccCCCCCCCCccHHHH--HHHHHHHHHH
Confidence 99999999999987543 22222 22234444554 899976433221 12332 5677766553
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=134.73 Aligned_cols=193 Identities=18% Similarity=0.202 Sum_probs=121.8
Q ss_pred EEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHH-cCcEEEEEecCCCCCCch--hHHhcccccCCcChHh
Q 004368 501 ICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGR--QWYENGKFLKKKNTFT 577 (758)
Q Consensus 501 ~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G~--~~~~~~~~~~~~~~~~ 577 (758)
..|+.|+.. +.++.|+||.+||+.+......-...+..+++ +||+|+.|+......... .|.. .....+..+..
T Consensus 3 Y~lYvP~~~--~~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~~d~~ 79 (220)
T PF10503_consen 3 YRLYVPPGA--PRGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGGGDVA 79 (220)
T ss_pred EEEecCCCC--CCCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCccchh
Confidence 456667765 23578999999997654322111112346776 599999998543222222 4443 22223344556
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCH
Q 004368 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKE 657 (758)
Q Consensus 578 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~ 657 (758)
.+.+.+++++.+.-+|++||.+.|.|+||.|+..++..+||+|+|+...++..--... + .. .....-.-|....+
T Consensus 80 ~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~--~-~~--~a~~~m~~g~~~~p 154 (220)
T PF10503_consen 80 FIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAA--S-GA--SALSAMRSGPRPAP 154 (220)
T ss_pred hHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccccccccc--C-cc--cHHHHhhCCCCCCh
Confidence 6777899999999999999999999999999999999999999999988876321100 0 00 00000011222222
Q ss_pred HHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhc
Q 004368 658 EFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREM 706 (758)
Q Consensus 658 ~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~ 706 (758)
.........+.. . -.+| ++|+||..|..|.+..+.++++.+...
T Consensus 155 ~~~~~a~~~~g~--~--~~~P-~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 155 AAAWGARSDAGA--Y--PGYP-RIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred HHHHHhhhhccC--C--CCCC-EEEEecCCCCccCcchHHHHHHHHHHc
Confidence 221111111110 1 1356 889999999999999999999988764
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-13 Score=140.41 Aligned_cols=239 Identities=19% Similarity=0.221 Sum_probs=148.3
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhc
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 566 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~ 566 (758)
.+-.+.+.||..+......+.. .+..+||++||...... .|...+..|..+||.|+..|.||+|.+.+ ..
T Consensus 10 ~~~~~~~~d~~~~~~~~~~~~~-----~~~g~Vvl~HG~~Eh~~--ry~~la~~l~~~G~~V~~~D~RGhG~S~r--~~- 79 (298)
T COG2267 10 TEGYFTGADGTRLRYRTWAAPE-----PPKGVVVLVHGLGEHSG--RYEELADDLAARGFDVYALDLRGHGRSPR--GQ- 79 (298)
T ss_pred ccceeecCCCceEEEEeecCCC-----CCCcEEEEecCchHHHH--HHHHHHHHHHhCCCEEEEecCCCCCCCCC--CC-
Confidence 3445677899888776554432 22389999999543322 25556778999999999999999998864 11
Q ss_pred ccccCCcChHhHHHHHHHHHHHcCC--CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh---cc-----
Q 004368 567 GKFLKKKNTFTDFIACAEYLIKNCY--CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT---TM----- 636 (758)
Q Consensus 567 ~~~~~~~~~~~D~~~~~~~l~~~~~--~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~---~~----- 636 (758)
......|+|+++.++.+++.-. .-..++.++||||||+++..++.+++..+.++|+.+|++.+.. ..
T Consensus 80 ---rg~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~ 156 (298)
T COG2267 80 ---RGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARL 156 (298)
T ss_pred ---cCCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHH
Confidence 1112235555555555444321 1247999999999999999999999999999999999987652 00
Q ss_pred -C------CCCCCCChhhhhccC-CC----CCHHHHHHHHhcCcc-----------------------cccCCCCCCeEE
Q 004368 637 -L------DPTIPLTTAEWEEWG-DP----WKEEFYFYMKSYSPV-----------------------DNVKAQNYPHIL 681 (758)
Q Consensus 637 -~------~~~~~~~~~~~~e~g-~p----~~~~~~~~l~~~sp~-----------------------~~i~~~~~P~~L 681 (758)
. .+.++... . .+++ .. .+++..+.+. -+|. ....++..| +|
T Consensus 157 ~~~~~~~~~p~~~~~~-~-~~~~~~~~~~sr~~~~~~~~~-~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~P-vL 232 (298)
T COG2267 157 ALKLLGRIRPKLPVDS-N-LLEGVLTDDLSRDPAEVAAYE-ADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALP-VL 232 (298)
T ss_pred hcccccccccccccCc-c-cccCcCcchhhcCHHHHHHHh-cCCccccCCccHHHHHHHHHhhcccchhccccccCC-EE
Confidence 0 01111111 0 0000 00 1222221111 1231 123345788 99
Q ss_pred EeccCCCCCCC-ChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC--CChHHHHHHHHHHHHHHHHhcC
Q 004368 682 VTAGLNDPRVM-YSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK--SGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 682 i~~G~~D~~V~-~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~--~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
|++|+.|..|+ .....++++++.... .+++.++ ++-|... .++. +-+...+..+||.+++.
T Consensus 233 ll~g~~D~vv~~~~~~~~~~~~~~~~~--~~~~~~~---g~~He~~~E~~~~-r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 233 LLQGGDDRVVDNVEGLARFFERAGSPD--KELKVIP---GAYHELLNEPDRA-REEVLKDILAWLAEALP 296 (298)
T ss_pred EEecCCCccccCcHHHHHHHHhcCCCC--ceEEecC---CcchhhhcCcchH-HHHHHHHHHHHHHhhcc
Confidence 99999999999 577767766655433 4667776 8999653 3331 13334556889887754
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=136.70 Aligned_cols=240 Identities=17% Similarity=0.172 Sum_probs=154.6
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccC---CCCCCChHHHHHHH-cCcEEEEEecCCCCCCch
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC---NDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGR 561 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~---~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G~ 561 (758)
...+.+. ....|++.|+.|... ......|+|||+|||...- ..+.|......++. .+.+|+.+|||-..|.
T Consensus 63 ~~dv~~~--~~~~l~vRly~P~~~-~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh-- 137 (336)
T KOG1515|consen 63 SKDVTID--PFTNLPVRLYRPTSS-SSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEH-- 137 (336)
T ss_pred eeeeEec--CCCCeEEEEEcCCCC-CcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCC--
Confidence 3444444 344588888888775 4337899999999985433 34556666667755 5999999999987763
Q ss_pred hHHhcccccCCcChHhHHHHHHHHHHHc----CCCCCCcEEEEEeChhHHHHHHHHhhC------CCceeEEEEcCCccc
Q 004368 562 QWYENGKFLKKKNTFTDFIACAEYLIKN----CYCTKEKLCIEGRSAGGLLIGAVLNMR------PDLFKAAVAAVPFVD 631 (758)
Q Consensus 562 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~----~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~~~~d 631 (758)
.-+..++|..+|+.|+.++ ..+|++||+|+|-|+||.+|..++.+. +-..++.|+..|++.
T Consensus 138 ---------~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~ 208 (336)
T KOG1515|consen 138 ---------PFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQ 208 (336)
T ss_pred ---------CCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccC
Confidence 3356789999999999886 568999999999999999887776552 246799999999977
Q ss_pred hhhccCC-------CCCCCChhhhhcc---CCCCCHHHHHHHHhcCccc-----ccCCCCCCeEEEeccCCCCCCCChHH
Q 004368 632 VLTTMLD-------PTIPLTTAEWEEW---GDPWKEEFYFYMKSYSPVD-----NVKAQNYPHILVTAGLNDPRVMYSEP 696 (758)
Q Consensus 632 ~~~~~~~-------~~~~~~~~~~~e~---g~p~~~~~~~~l~~~sp~~-----~i~~~~~P~~Li~~G~~D~~V~~~~~ 696 (758)
....... ............| -.|+..... .-...+|.. ...-..+|++||+.++.|... .+.
T Consensus 209 ~~~~~~~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~-~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~ 285 (336)
T KOG1515|consen 209 GTDRTESEKQQNLNGSPELARPKIDKWWRLLLPNGKTDL-DHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEG 285 (336)
T ss_pred CCCCCCHHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCc-CCccccccccccccCccccCCCceEEEEeCchhhh--hhh
Confidence 5432110 0000000000000 111110000 000112222 111237888999999999766 699
Q ss_pred HHHHHHHHhcCCCCceEEEEecCCCCCCCC---CChHHHHHHHHHHHHHHHH
Q 004368 697 AKFVAKLREMKTDDNILLFKCELGAGHFSK---SGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 697 ~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~---~~~~~~~~~~~~~~~fl~~ 745 (758)
..|+++|++.|+.++.+.++ ++.|++. .......+......+|+.+
T Consensus 286 ~~Y~~~Lkk~Gv~v~~~~~e---~~~H~~~~~~~~~~~a~~~~~~i~~fi~~ 334 (336)
T KOG1515|consen 286 LAYAEKLKKAGVEVTLIHYE---DGFHGFHILDPSSKEAHALMDAIVEFIKS 334 (336)
T ss_pred HHHHHHHHHcCCeEEEEEEC---CCeeEEEecCCchhhHHHHHHHHHHHHhh
Confidence 99999999999998865665 8888763 2223334344445566654
|
|
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=128.00 Aligned_cols=145 Identities=19% Similarity=0.272 Sum_probs=106.5
Q ss_pred EEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcE
Q 004368 518 LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKL 597 (758)
Q Consensus 518 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i 597 (758)
+||++||..+. ...|......|+++||.|+.+|+|+.+..... .++.++++++.+.. .|+++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDSDGA--------------DAVERVLADIRAGY-PDPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTSHHS--------------HHHHHHHHHHHHHH-CTCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCccchh--------------HHHHHHHHHHHhhc-CCCCcE
Confidence 58999997553 33466777899999999999999998876221 24555555543322 288999
Q ss_pred EEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCC
Q 004368 598 CIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNY 677 (758)
Q Consensus 598 ~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~ 677 (758)
+++|+|+||.++..++.+. +.++++|+..|+.+. +. +.+.+.
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~~----------------------------~~---------~~~~~~ 105 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPDS----------------------------ED---------LAKIRI 105 (145)
T ss_dssp EEEEETHHHHHHHHHHHHS-TTESEEEEESESSGC----------------------------HH---------HTTTTS
T ss_pred EEEEEccCcHHHHHHhhhc-cceeEEEEecCccch----------------------------hh---------hhccCC
Confidence 9999999999999999987 789999999984110 00 112234
Q ss_pred CeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCC
Q 004368 678 PHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHF 724 (758)
Q Consensus 678 P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~ 724 (758)
| +|+++|++|+.+++.+..+++++++ .+.+++.++ +++|+
T Consensus 106 p-v~~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~---g~~H~ 145 (145)
T PF12695_consen 106 P-VLFIHGENDPLVPPEQVRRLYEALP---GPKELYIIP---GAGHF 145 (145)
T ss_dssp E-EEEEEETT-SSSHHHHHHHHHHHHC---SSEEEEEET---TS-TT
T ss_pred c-EEEEEECCCCcCCHHHHHHHHHHcC---CCcEEEEeC---CCcCc
Confidence 5 9999999999999999999999987 344566665 89994
|
... |
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-13 Score=137.29 Aligned_cols=207 Identities=17% Similarity=0.216 Sum_probs=123.8
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
..|+||++||..+... .|... ...+.+||.|+.+|+||.|...... ....+++|....+..+++. .+.
T Consensus 12 ~~~~iv~lhG~~~~~~--~~~~~-~~~l~~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~~~~~i~~--~~~ 79 (257)
T TIGR03611 12 DAPVVVLSSGLGGSGS--YWAPQ-LDVLTQRFHVVTYDHRGTGRSPGEL-------PPGYSIAHMADDVLQLLDA--LNI 79 (257)
T ss_pred CCCEEEEEcCCCcchh--HHHHH-HHHHHhccEEEEEcCCCCCCCCCCC-------cccCCHHHHHHHHHHHHHH--hCC
Confidence 4689999999654432 23333 3445678999999999998765321 1112445555544444433 245
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh-----------ccCCCCCCC---------Chhhh-hc---
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT-----------TMLDPTIPL---------TTAEW-EE--- 650 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~-----------~~~~~~~~~---------~~~~~-~e--- 650 (758)
+++.++|+|+||+++..++.++|+.++++|+..++.+... .+....... ....| .+
T Consensus 80 ~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (257)
T TIGR03611 80 ERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENAA 159 (257)
T ss_pred CcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccch
Confidence 7899999999999999999999999999998776543210 000000000 00000 00
Q ss_pred ---------cCCC-CCHH---HHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEe
Q 004368 651 ---------WGDP-WKEE---FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKC 717 (758)
Q Consensus 651 ---------~g~p-~~~~---~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 717 (758)
.... .... .+..+..++....++++++| +|+++|++|..+|+.+++++++.+.. .+.++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~- 233 (257)
T TIGR03611 160 RLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHP-VLLIANRDDMLVPYTQSLRLAAALPN----AQLKLLP- 233 (257)
T ss_pred hhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCcc-EEEEecCcCcccCHHHHHHHHHhcCC----ceEEEEC-
Confidence 0000 0001 11222333444556677888 99999999999999999888776542 3455665
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHH
Q 004368 718 ELGAGHFSKSGRFERLREAAFTYTFL 743 (758)
Q Consensus 718 ~~~~gH~~~~~~~~~~~~~~~~~~fl 743 (758)
++||.......+.+.+. +.+||
T Consensus 234 --~~gH~~~~~~~~~~~~~--i~~fl 255 (257)
T TIGR03611 234 --YGGHASNVTDPETFNRA--LLDFL 255 (257)
T ss_pred --CCCCCccccCHHHHHHH--HHHHh
Confidence 89998654444433332 45565
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-13 Score=140.71 Aligned_cols=210 Identities=15% Similarity=0.124 Sum_probs=122.5
Q ss_pred CCCEEEEecCCCccCCCCC-CChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
..|.||++||.......+. +...+..+++.||.|+.+|+||.|........ ........+|+.+.++.+ +
T Consensus 29 ~~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~---~~~~~~~~~~l~~~l~~l------~ 99 (282)
T TIGR03343 29 NGEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMD---EQRGLVNARAVKGLMDAL------D 99 (282)
T ss_pred CCCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCc---ccccchhHHHHHHHHHHc------C
Confidence 3477999999543322211 11234567778999999999999876432110 000011234444444332 4
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhc-----------cCC-CCCCCChhhhh------------
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT-----------MLD-PTIPLTTAEWE------------ 649 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~-----------~~~-~~~~~~~~~~~------------ 649 (758)
.+++.++|+|+||.++..++.++|++++++|+.+|....... +.. ...+. ...+.
T Consensus 100 ~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 178 (282)
T TIGR03343 100 IEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPS-YETLKQMLNVFLFDQSL 178 (282)
T ss_pred CCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCC-HHHHHHHHhhCccCccc
Confidence 579999999999999999999999999999988764210000 000 00000 00000
Q ss_pred --------ccCCC-CCHHHHHH-HHh--------cCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCc
Q 004368 650 --------EWGDP-WKEEFYFY-MKS--------YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN 711 (758)
Q Consensus 650 --------e~g~p-~~~~~~~~-l~~--------~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~ 711 (758)
.+... ..+..... +.. .+....++++++| +|+++|++|..|++..++++++.+. +.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vlli~G~~D~~v~~~~~~~~~~~~~----~~~ 253 (282)
T TIGR03343 179 ITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAK-TLVTWGRDDRFVPLDHGLKLLWNMP----DAQ 253 (282)
T ss_pred CcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCC-EEEEEccCCCcCCchhHHHHHHhCC----CCE
Confidence 00000 01111111 110 1112345567898 9999999999999988888877764 355
Q ss_pred eEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 712 ILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 712 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
+++++ ++||.........+.+. +.+||.
T Consensus 254 ~~~i~---~agH~~~~e~p~~~~~~--i~~fl~ 281 (282)
T TIGR03343 254 LHVFS---RCGHWAQWEHADAFNRL--VIDFLR 281 (282)
T ss_pred EEEeC---CCCcCCcccCHHHHHHH--HHHHhh
Confidence 67776 89998766655555443 456764
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-13 Score=137.14 Aligned_cols=189 Identities=19% Similarity=0.212 Sum_probs=107.6
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHH-HHHHcCcEEEEEecCC------CCCCchhHHhcccccCCc-ChHhHHHH----
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRL-SLLDRGFIFAIAQIRG------GGELGRQWYENGKFLKKK-NTFTDFIA---- 581 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~-~l~~~G~~v~~~~~RG------~g~~G~~~~~~~~~~~~~-~~~~D~~~---- 581 (758)
...|+||+.|| +|... ..+..... .+......++.++-+- +|..+..|++........ ...+++..
T Consensus 12 ~~~~lvi~LHG-~G~~~-~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~ 89 (216)
T PF02230_consen 12 KAKPLVILLHG-YGDSE-DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAER 89 (216)
T ss_dssp T-SEEEEEE---TTS-H-HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHH
T ss_pred CCceEEEEECC-CCCCc-chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHH
Confidence 46899999999 34332 11111111 1122467777776532 122223787644322211 22333333
Q ss_pred ---HHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHH
Q 004368 582 ---CAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEE 658 (758)
Q Consensus 582 ---~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~ 658 (758)
.++.+++.+ ++++||.+.|+|+||.+++.++.++|+.|+++|+.+|.+-..... .
T Consensus 90 l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~--------------------~- 147 (216)
T PF02230_consen 90 LDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESEL--------------------E- 147 (216)
T ss_dssp HHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCC--------------------H-
T ss_pred HHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccccc--------------------c-
Confidence 333334445 899999999999999999999999999999999999975321100 0
Q ss_pred HHHHHHhcCcccccCCC-CCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHH
Q 004368 659 FYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAA 737 (758)
Q Consensus 659 ~~~~l~~~sp~~~i~~~-~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 737 (758)
...... +.| +|++||.+|++||+..+++.++.|++.+.+++...|+ +.||... .++..
T Consensus 148 -----------~~~~~~~~~p-i~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~---g~gH~i~------~~~~~ 206 (216)
T PF02230_consen 148 -----------DRPEALAKTP-ILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYP---GGGHEIS------PEELR 206 (216)
T ss_dssp -----------CCHCCCCTS--EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEET---T-SSS--------HHHHH
T ss_pred -----------ccccccCCCc-EEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcC---CCCCCCC------HHHHH
Confidence 000111 466 9999999999999999999999999999877766665 8999753 23344
Q ss_pred HHHHHHHHhc
Q 004368 738 FTYTFLMRAL 747 (758)
Q Consensus 738 ~~~~fl~~~l 747 (758)
+..+||.+++
T Consensus 207 ~~~~~l~~~~ 216 (216)
T PF02230_consen 207 DLREFLEKHI 216 (216)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHhhhC
Confidence 4678988763
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-11 Score=134.55 Aligned_cols=246 Identities=14% Similarity=0.095 Sum_probs=161.5
Q ss_pred CCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC-cceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcE
Q 004368 199 SPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDI 276 (758)
Q Consensus 199 SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~ 276 (758)
.+.+.+++|.....+....+|+++|.+++....+...+ ....+.||||| .++|+.... ...+|+++++.++. ..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~--~~ 227 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQ--RE 227 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCC--EE
Confidence 44678899998765455789999999877666543333 35568999999 899987643 23579999998763 22
Q ss_pred EEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEEEEcCCCCCCc
Q 004368 277 CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNS 355 (758)
Q Consensus 277 ~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~ 355 (758)
.+.... .....+.|||||+.|++.....+..+||++|+.++. .+.++..... ....|++||++|++.+++.+ ..
T Consensus 228 ~~~~~~--~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g--~~ 302 (417)
T TIGR02800 228 KVASFP--GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG--SP 302 (417)
T ss_pred EeecCC--CCccceEECCCCCEEEEEECCCCCccEEEEECCCCC-EEECCCCCCCCCCEEECCCCCEEEEEECCCC--Cc
Confidence 232211 122357899999999988776667899999998876 6666543222 24468999999999988763 45
Q ss_pred EEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCC
Q 004368 356 ELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPS 435 (758)
Q Consensus 356 ~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~ 435 (758)
+||.+++++. ....+...........++++++.+++.....+..++++++++. +..+. + .+.. .....
T Consensus 303 ~iy~~d~~~~-~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~--~~~~~------l--~~~~-~~~~p 370 (417)
T TIGR02800 303 QIYMMDADGG-EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG--GGERV------L--TDTG-LDESP 370 (417)
T ss_pred eEEEEECCCC-CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC--CCeEE------c--cCCC-CCCCc
Confidence 8999998763 3333443333333345666777888877766677788888763 32211 1 1111 12334
Q ss_pred CcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 436 ESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 436 ~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.++++++.+++....... ..++.++..+..
T Consensus 371 ~~spdg~~l~~~~~~~~~-~~l~~~~~~g~~ 400 (417)
T TIGR02800 371 SFAPNGRMILYATTRGGR-GVLGLVSTDGRF 400 (417)
T ss_pred eECCCCCEEEEEEeCCCc-EEEEEEECCCce
Confidence 667888888777764433 467766654433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-11 Score=135.02 Aligned_cols=235 Identities=12% Similarity=0.112 Sum_probs=149.8
Q ss_pred CCEEEEEEeCCC-CeEEEEEEEECCCCceeeccc-cCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEE
Q 004368 202 NKLVAYAEDTKG-DEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICL 278 (758)
Q Consensus 202 G~~lAy~~~~~G-~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v 278 (758)
+++|||+....+ ...++|+++|.+++....++. ......+.||||| +|+|++.+. ...+||++++.++.. ..+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~--~~l 243 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGAR--KVV 243 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCce--EEE
Confidence 689999987644 446899999998877554432 2335669999999 899988643 235699999977632 233
Q ss_pred eeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEEEEcCCCCCCcEE
Q 004368 279 YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSEL 357 (758)
Q Consensus 279 ~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L 357 (758)
.... .....+.|||||++|++.+...+..+||++|++++. .+.++..... ....|+|||++|+|.+++++ ..+|
T Consensus 244 ~~~~--g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g--~~~I 318 (429)
T PRK01742 244 ASFR--GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSG--SPQV 318 (429)
T ss_pred ecCC--CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCC--CceE
Confidence 2211 122357899999999998766666789999998876 6777654322 34569999999999988753 4689
Q ss_pred EEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCc
Q 004368 358 LACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSES 437 (758)
Q Consensus 358 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~ 437 (758)
|.++..+. ..+.+ .... . ...++++++.+++... ..+.++++.. |. .. .+. .. .....+.+
T Consensus 319 ~~~~~~~~-~~~~l-~~~~-~-~~~~SpDG~~ia~~~~----~~i~~~Dl~~-g~-~~------~lt--~~-~~~~~~~~ 379 (429)
T PRK01742 319 YRMSASGG-GASLV-GGRG-Y-SAQISADGKTLVMING----DNVVKQDLTS-GS-TE------VLS--ST-FLDESPSI 379 (429)
T ss_pred EEEECCCC-CeEEe-cCCC-C-CccCCCCCCEEEEEcC----CCEEEEECCC-CC-eE------Eec--CC-CCCCCceE
Confidence 99987652 22333 3222 2 2356777888876644 2355677653 22 11 111 11 12234567
Q ss_pred ccCCcEEEEEEecCCCCCEEEEEECCCC
Q 004368 438 VFSSRILRFHYSSLRTPPSVYDYDMDMG 465 (758)
Q Consensus 438 ~~d~~~l~~~~sS~~~P~~i~~~d~~~~ 465 (758)
++++..+.+... -..-..++.++..++
T Consensus 380 sPdG~~i~~~s~-~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 380 SPNGIMIIYSST-QGLGKVLQLVSADGR 406 (429)
T ss_pred CCCCCEEEEEEc-CCCceEEEEEECCCC
Confidence 888887766543 222334455554443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-12 Score=137.58 Aligned_cols=205 Identities=13% Similarity=0.104 Sum_probs=146.7
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+-.+.|||||+.|+|..-..+. ...++++|+++|+.... ...+....+.||||| +++|+...+ ...++|..++.+
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd--g~~~iy~~dl~~ 271 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD--GSPDIYLMDLDG 271 (425)
T ss_pred eeccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC--CCccEEEEcCCC
Confidence 4568999999999999765552 27899999999887654 455666678999999 899987654 456799999988
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce-eeEEeecCCEEEEEEcC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~ 349 (758)
... .. +++.. .....++|||||++|+|.+...+..+||+++++++. .++++....+. ...|||||++++|.+..
T Consensus 272 ~~~--~~-Lt~~~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-~~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 272 KNL--PR-LTNGF-GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-VTRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred Ccc--ee-cccCC-ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-eeEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 752 22 22222 223368899999999999999999999999999887 77777655443 34599999999999844
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+ + ...++..++.+... ..+.........+.+...+..+++.....+.+.+....++
T Consensus 347 ~-g-~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~ 402 (425)
T COG0823 347 G-G-QWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLD 402 (425)
T ss_pred C-C-ceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccCCCCceEEEeecc
Confidence 3 2 36788888765332 2233333333345666667777777666666666555544
|
|
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.7e-13 Score=136.63 Aligned_cols=143 Identities=20% Similarity=0.218 Sum_probs=92.6
Q ss_pred CCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccC----------------CCCCCChHHHHHHHc
Q 004368 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC----------------NDPAFNSSRLSLLDR 544 (758)
Q Consensus 481 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~----------------~~~~~~~~~~~l~~~ 544 (758)
.++|..|.+.+-+.++..+|++++.|++. .++.|.||++||-.+.. ....-......|+.+
T Consensus 83 rdGY~~EKv~f~~~p~~~vpaylLvPd~~---~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~ 159 (390)
T PF12715_consen 83 RDGYTREKVEFNTTPGSRVPAYLLVPDGA---KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR 159 (390)
T ss_dssp ETTEEEEEEEE--STTB-EEEEEEEETT-----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT
T ss_pred cCCeEEEEEEEEccCCeeEEEEEEecCCC---CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC
Confidence 45788999999999999999999999975 47899999998732111 000012245789999
Q ss_pred CcEEEEEecCCCCCCchh-----------------HHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHH
Q 004368 545 GFIFAIAQIRGGGELGRQ-----------------WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGL 607 (758)
Q Consensus 545 G~~v~~~~~RG~g~~G~~-----------------~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~ 607 (758)
||+|+++|.+|-||.|.. +...|+...+...++| +.+++||..+..+|++|||++|+|+||+
T Consensus 160 GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~dd-mr~lDfL~slpeVD~~RIG~~GfSmGg~ 238 (390)
T PF12715_consen 160 GYVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDD-MRALDFLASLPEVDPDRIGCMGFSMGGY 238 (390)
T ss_dssp TSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHH-HHHHHHHCT-TTEEEEEEEEEEEGGGHH
T ss_pred CCEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHH-HHHHHHHhcCcccCccceEEEeecccHH
Confidence 999999999988875431 1112222333445555 5599999999999999999999999999
Q ss_pred HHHHHHhhCCCceeEEEEcCC
Q 004368 608 LIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 608 l~~~~~~~~p~~f~a~v~~~~ 628 (758)
.++.+++.. ++++|+|+.+-
T Consensus 239 ~a~~LaALD-dRIka~v~~~~ 258 (390)
T PF12715_consen 239 RAWWLAALD-DRIKATVANGY 258 (390)
T ss_dssp HHHHHHHH--TT--EEEEES-
T ss_pred HHHHHHHcc-hhhHhHhhhhh
Confidence 999888875 56677665543
|
|
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-11 Score=131.36 Aligned_cols=127 Identities=15% Similarity=0.146 Sum_probs=85.6
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhc
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 566 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~ 566 (758)
+.+.+...||..+... |.... . ...|.||++||.... ...|...+..|.++||.|+.+|.||+|......
T Consensus 22 ~~~~~~~~~~~~~~i~--y~~~G-~--~~~~~lvliHG~~~~--~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~--- 91 (302)
T PRK00870 22 HYVDVDDGDGGPLRMH--YVDEG-P--ADGPPVLLLHGEPSW--SYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPT--- 91 (302)
T ss_pred eeEeecCCCCceEEEE--EEecC-C--CCCCEEEEECCCCCc--hhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCC---
Confidence 5566666667665544 22211 1 135789999995433 233555566777789999999999998753210
Q ss_pred ccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 567 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 567 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
.....++++..+.+..++++ .+.+++.++|||+||.++..++.++|++++++|+.++
T Consensus 92 ---~~~~~~~~~~a~~l~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 148 (302)
T PRK00870 92 ---RREDYTYARHVEWMRSWFEQ--LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANT 148 (302)
T ss_pred ---CcccCCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCC
Confidence 11123455655555544443 2346899999999999999999999999999988765
|
|
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=135.63 Aligned_cols=241 Identities=14% Similarity=0.098 Sum_probs=131.3
Q ss_pred eeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCC--------------------C---C-ChHHHHHHHcCc
Q 004368 491 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP--------------------A---F-NSSRLSLLDRGF 546 (758)
Q Consensus 491 ~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~--------------------~---~-~~~~~~l~~~G~ 546 (758)
+.+.||..|......|+ .+..+|+++||-.+..... . | ...+..|.++||
T Consensus 2 ~~~~~g~~l~~~~~~~~------~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~ 75 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVK------NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGY 75 (332)
T ss_pred ccCCCCCeEEEeeeecc------CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCC
Confidence 45679998887755443 2457999999943333211 1 1 234678889999
Q ss_pred EEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHc------------------CCCCCCcEEEEEeChhHHH
Q 004368 547 IFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN------------------CYCTKEKLCIEGRSAGGLL 608 (758)
Q Consensus 547 ~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~------------------~~~d~~~i~i~G~S~GG~l 608 (758)
.|+.+|.||+|.....-...+.-..-..-++|+...++.+.++ .+-....+.++||||||.+
T Consensus 76 ~V~~~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i 155 (332)
T TIGR01607 76 SVYGLDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNI 155 (332)
T ss_pred cEEEecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHH
Confidence 9999999999975432000010001111234555555554431 1111357999999999999
Q ss_pred HHHHHhhCCC--------ceeEEEEcCCccchhhc------------------c--CCCCCCCCh-h--hh-----hcc-
Q 004368 609 IGAVLNMRPD--------LFKAAVAAVPFVDVLTT------------------M--LDPTIPLTT-A--EW-----EEW- 651 (758)
Q Consensus 609 ~~~~~~~~p~--------~f~a~v~~~~~~d~~~~------------------~--~~~~~~~~~-~--~~-----~e~- 651 (758)
+..++...++ .++++|+.+|.+.+... + ..+.+.... . .+ ..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 235 (332)
T TIGR01607 156 ALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVNDIIK 235 (332)
T ss_pred HHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhhHHh
Confidence 9988765432 58888888876532110 0 001110000 0 00 000
Q ss_pred CCCC------CHHHHHHHHhcCc--ccccCCC--CCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCC
Q 004368 652 GDPW------KEEFYFYMKSYSP--VDNVKAQ--NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 721 (758)
Q Consensus 652 g~p~------~~~~~~~l~~~sp--~~~i~~~--~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 721 (758)
-+|. ....+..+..... ...+.++ +.| +|++||.+|..|++..+.++++++... ..++++++ ++
T Consensus 236 ~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P-~Lii~G~~D~vv~~~~~~~~~~~~~~~--~~~l~~~~---g~ 309 (332)
T TIGR01607 236 FDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIP-ILFIHSKGDCVCSYEGTVSFYNKLSIS--NKELHTLE---DM 309 (332)
T ss_pred cCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCC-EEEEEeCCCCccCHHHHHHHHHhccCC--CcEEEEEC---CC
Confidence 1110 0011111111110 1133333 577 999999999999999998888766432 34566665 89
Q ss_pred CCCCCCChHHHHHHHHHHHHHHH
Q 004368 722 GHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 722 gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
+|....... .-+-..++.+||.
T Consensus 310 ~H~i~~E~~-~~~v~~~i~~wL~ 331 (332)
T TIGR01607 310 DHVITIEPG-NEEVLKKIIEWIS 331 (332)
T ss_pred CCCCccCCC-HHHHHHHHHHHhh
Confidence 997654321 1112233567764
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.42 E-value=9e-12 Score=134.39 Aligned_cols=243 Identities=19% Similarity=0.180 Sum_probs=149.9
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC-------------------cceeEEEecCC-eEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-------------------VTASVEWAGNE-ALVYI 252 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-------------------~~~~~~wspDg-~l~y~ 252 (758)
+..+.|||||++|||+.+ .+||++++.+++.++++..+ ....+.||||| +|+|.
T Consensus 45 ~~~~~~sP~g~~~~~v~~------~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 45 LQDAKWSPDGKYIAFVRD------NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp BSEEEE-SSSTEEEEEET------TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred cccceeecCCCeeEEEec------CceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 457899999999999985 37999999988877654433 13557899999 89999
Q ss_pred EeCCCCC-------------------------------CceEEEEEcCCCCCCcEEEee---ecCCceeeEEEEcCCCcE
Q 004368 253 TMDEILR-------------------------------PDKAWLHKLEADQSNDICLYH---EKDDIYSLGLQASESKKF 298 (758)
Q Consensus 253 ~~~~~~~-------------------------------~~~v~~~~l~~~~~~~~~v~~---~~~~~~~~~~~~S~Dg~~ 298 (758)
+.|+..- ..+|+++++.++... .+-.. .....+...+.|++|++.
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCcE
Confidence 8765310 124555666555321 11111 123445567899999996
Q ss_pred EEEEecCC--cceEEEEEeCCCCCceEEeeccc--ccee----eEEe-ecCCEEEEEEcCCCCCCcEEEEEeCCCCCcce
Q 004368 299 LFIASESK--ITRFVFYLDVSKPEELRVLTPRV--VGVD----TAAS-HRGNHFFITRRSDELFNSELLACPVDNTSETT 369 (758)
Q Consensus 299 l~~~s~~~--~~~~l~~~d~~~~~~~~~l~~~~--~~~~----~~~s-~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~ 369 (758)
|++...++ ....++++|..++. .+.+.... ..+. ..+. +++..+++++.++| ..+|+.++.++ +..+
T Consensus 198 l~~~~~nR~q~~~~l~~~d~~tg~-~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G--~~hly~~~~~~-~~~~ 273 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLVLCDASTGE-TRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG--YRHLYLYDLDG-GKPR 273 (353)
T ss_dssp EEEEEEETTSTEEEEEEEEECTTT-CEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS--SEEEEEEETTS-SEEE
T ss_pred EEEEEcccCCCEEEEEEEECCCCc-eeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC--CcEEEEEcccc-ccee
Confidence 66655443 44678889998776 33332211 1121 1243 78888888888764 67999999876 3345
Q ss_pred eeecCCCCc-eeeeEEEeCCEEEEEEEeCC--eeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEE
Q 004368 370 VLIPHRESV-KLQDIQLFIDHLAVYEREGG--LQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRF 446 (758)
Q Consensus 370 ~l~~~~~~~-~~~~~~~~~~~l~~~~~~~g--~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~ 446 (758)
+++.....+ .+..++..++.++|.+..+. ..+|+.++++. ++.+++|+... ... ....++++++.++.
T Consensus 274 ~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~-~~~~~~LT~~~------~~~--~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 274 QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS-GGEPKCLTCED------GDH--YSASFSPDGKYYVD 344 (353)
T ss_dssp ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE-TTEEEESSTTS------STT--EEEEE-TTSSEEEE
T ss_pred ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC-CCCeEeccCCC------CCc--eEEEECCCCCEEEE
Confidence 576665554 34455555678988887644 45555555551 44444443221 111 13456789999999
Q ss_pred EEecCCCCC
Q 004368 447 HYSSLRTPP 455 (758)
Q Consensus 447 ~~sS~~~P~ 455 (758)
+++++.+|+
T Consensus 345 ~~s~~~~P~ 353 (353)
T PF00930_consen 345 TYSGPDTPP 353 (353)
T ss_dssp EEESSSSCE
T ss_pred EEcCCCCCC
Confidence 999999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-12 Score=138.64 Aligned_cols=219 Identities=20% Similarity=0.263 Sum_probs=148.8
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCC-CccCCCC---CC--ChHHHHHHHcCcEEEEEecCCC
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGS-YEICNDP---AF--NSSRLSLLDRGFIFAIAQIRGG 556 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg-~~~~~~~---~~--~~~~~~l~~~G~~v~~~~~RG~ 556 (758)
.+..+.+.++.+||++|.+.|++|++. ++.|+++...=. |...... .. .+....|+.+||+|+..|+||.
T Consensus 16 ~~~~~~v~V~MRDGvrL~~dIy~Pa~~----g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~ 91 (563)
T COG2936 16 GYIERDVMVPMRDGVRLAADIYRPAGA----GPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGR 91 (563)
T ss_pred ceeeeeeeEEecCCeEEEEEEEccCCC----CCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEeccccc
Confidence 366778999999999999999999875 789999987622 2222111 11 1111368999999999999999
Q ss_pred CCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc
Q 004368 557 GELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM 636 (758)
Q Consensus 557 g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~ 636 (758)
+++...|..- .+ .+.+|-.++|+||+++.+.| .+||.+|.||+|+...++|+..|.-.||++...+..|+-+..
T Consensus 92 ~~SeG~~~~~----~~-~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d~ 165 (563)
T COG2936 92 GGSEGVFDPE----SS-REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRDD 165 (563)
T ss_pred ccCCccccee----cc-ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccccccc
Confidence 9887766532 22 46799999999999999986 899999999999999999988888889999999988843211
Q ss_pred -------------------CCCCC-----C--------CChh--hhhcc------CCCC-------CHHHHHHHHhcCcc
Q 004368 637 -------------------LDPTI-----P--------LTTA--EWEEW------GDPW-------KEEFYFYMKSYSPV 669 (758)
Q Consensus 637 -------------------~~~~~-----~--------~~~~--~~~e~------g~p~-------~~~~~~~l~~~sp~ 669 (758)
+.... + .... .|.+. +.|. .+-...+++..+-.
T Consensus 166 ~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW~~~~~~ 245 (563)
T COG2936 166 AFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFWRRGDRV 245 (563)
T ss_pred cccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchhhccCcc
Confidence 00000 0 0000 00000 1110 00001124445556
Q ss_pred cccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEE
Q 004368 670 DNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 716 (758)
Q Consensus 670 ~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 716 (758)
....++++| +|.+.|..|. -...+.++++.++.. +..+++-+
T Consensus 246 ~d~~~i~vP-~L~i~gW~D~--~l~~~~~~~~~~~~r--~~~lvvgP 287 (563)
T COG2936 246 ADLSKIKVP-ALVIGGWSDG--YLHTAIKLFAFLRSR--PVKLVVGP 287 (563)
T ss_pred cccccCCCc-EEEEcccccc--cccchHHHhhhcccC--CceeEEcc
Confidence 667788998 9999999997 445777888888875 23344443
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-12 Score=131.05 Aligned_cols=199 Identities=18% Similarity=0.206 Sum_probs=118.5
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
..|+||++||.... ...|..... .+.+||.|+.+|+||.|..... ....+++++.+.+..+++.- +.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~-~l~~~~~v~~~d~~G~G~s~~~--------~~~~~~~~~~~~~~~~i~~~--~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLP-ALTPDFRVLRYDKRGHGLSDAP--------EGPYSIEDLADDVLALLDHL--GI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHH-HhhcccEEEEecCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHh--CC
Confidence 46899999994332 223444433 4457999999999999876321 12235667666666655542 34
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhc---------cCCCCCC-CC---hhhh--hccCCCCCH--
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT---------MLDPTIP-LT---TAEW--EEWGDPWKE-- 657 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~---------~~~~~~~-~~---~~~~--~e~g~p~~~-- 657 (758)
+++.++|+|+||+++..++.++|++++++|+.++...+... +...... .. ...+ ..+..+...
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 78999999999999999999999999988877654221100 0000000 00 0000 011111000
Q ss_pred HHH----------------HHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCC
Q 004368 658 EFY----------------FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 721 (758)
Q Consensus 658 ~~~----------------~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 721 (758)
+.+ ..+...+....++++++| +|+++|++|..+|.....++.+.+. ..+.+.++ ++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-vlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~---~~ 230 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVP-TLCIAGDQDGSTPPELVREIADLVP----GARFAEIR---GA 230 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCC-eEEEEeccCCcCChHHHHHHHHhCC----CceEEEEC---CC
Confidence 000 111122223445566888 9999999999999988877766653 23566665 89
Q ss_pred CCCCCCChHHHHH
Q 004368 722 GHFSKSGRFERLR 734 (758)
Q Consensus 722 gH~~~~~~~~~~~ 734 (758)
||.......+.+.
T Consensus 231 gH~~~~~~p~~~~ 243 (251)
T TIGR02427 231 GHIPCVEQPEAFN 243 (251)
T ss_pred CCcccccChHHHH
Confidence 9976544444443
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.8e-11 Score=128.98 Aligned_cols=233 Identities=14% Similarity=0.117 Sum_probs=154.7
Q ss_pred CCCeEEEEEEEECCCCceeeccccC-cceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeE
Q 004368 212 KGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLG 289 (758)
Q Consensus 212 ~G~e~~~l~v~dl~~g~~~~~~~~~-~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~ 289 (758)
.+.-.++|++.|-++-.....+... ....+.|+||+ .++|....... +.++|+.++.++.....+-+.. ....
T Consensus 168 ~~~~~~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g----~~~~ 242 (425)
T COG0823 168 GGPLPYELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNG----NNGA 242 (425)
T ss_pred cCCCCceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCC----ccCC
Confidence 3445689999998733333333332 24458999999 89998775433 2579999999885433222221 2235
Q ss_pred EEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc-ceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcc
Q 004368 290 LQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSET 368 (758)
Q Consensus 290 ~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~ 368 (758)
+.|||||++|+|.....+..+||++|+.++. .+.|+.... .....|+|||++++|.+++.|. -+|++++.++. ..
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~--p~I~~~~~~g~-~~ 318 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGR--PQIYLYDLEGS-QV 318 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCC--cceEEECCCCC-ce
Confidence 7899999999999999999999999999887 555655322 2356799999999999999864 48999999873 34
Q ss_pred eeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEE
Q 004368 369 TVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHY 448 (758)
Q Consensus 369 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~ 448 (758)
+.++..........++++++++++.....|...+.++++..++. ...++ . .+.....++..++..+.|..
T Consensus 319 ~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt--------~-~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 319 TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILT--------S-TYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEcc--------c-cccCCCCCcCCCCceEEEec
Confidence 55665555555788999999999888666665666666653221 11111 1 11223455667777776655
Q ss_pred ecCCCCCEEEEEECCC
Q 004368 449 SSLRTPPSVYDYDMDM 464 (758)
Q Consensus 449 sS~~~P~~i~~~d~~~ 464 (758)
.+. .-+.++..+..+
T Consensus 389 ~~~-~~~~l~~~s~~g 403 (425)
T COG0823 389 GQG-GGSVLSLVSLDG 403 (425)
T ss_pred cCC-CCceEEEeeccc
Confidence 555 334455554433
|
|
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.7e-12 Score=131.06 Aligned_cols=214 Identities=16% Similarity=0.154 Sum_probs=126.3
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++||..+.+ ..|......|.++ |.|+++|.||.|.+...-.. ........+++|+...+..++++-. .+
T Consensus 29 ~~~vlllHG~~~~~--~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~-~~~~~~~~~~~~~a~~l~~~l~~l~--~~ 102 (294)
T PLN02824 29 GPALVLVHGFGGNA--DHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPR-SAPPNSFYTFETWGEQLNDFCSDVV--GD 102 (294)
T ss_pred CCeEEEECCCCCCh--hHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccc-cccccccCCHHHHHHHHHHHHHHhc--CC
Confidence 47899999965543 3466666777765 69999999999976431000 0000123456676666655554322 37
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc----------------CCCCCC--------CCh----hh
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM----------------LDPTIP--------LTT----AE 647 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~----------------~~~~~~--------~~~----~~ 647 (758)
++.++|+|+||.++..++.++|++++++|+.++........ +..... ... ..
T Consensus 103 ~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (294)
T PLN02824 103 PAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKNI 182 (294)
T ss_pred CeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHHH
Confidence 89999999999999999999999999999987643211000 000000 000 00
Q ss_pred h-hccCCC--CCHHHH----------------HHHHhcC----cccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHH
Q 004368 648 W-EEWGDP--WKEEFY----------------FYMKSYS----PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLR 704 (758)
Q Consensus 648 ~-~e~g~p--~~~~~~----------------~~l~~~s----p~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~ 704 (758)
+ ..|++. ..++.. ..+..++ +...+.++++| +|+++|.+|..++...+.++.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lvi~G~~D~~~~~~~~~~~~~~-- 259 (294)
T PLN02824 183 LCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCP-VLIAWGEKDPWEPVELGRAYANF-- 259 (294)
T ss_pred HHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCC-eEEEEecCCCCCChHHHHHHHhc--
Confidence 0 012211 111111 1111111 12335567888 99999999999998877664332
Q ss_pred hcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 705 EMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 705 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
....+++.++ ++||.......+.+... +.+||.+
T Consensus 260 --~~~~~~~~i~---~~gH~~~~e~p~~~~~~--i~~fl~~ 293 (294)
T PLN02824 260 --DAVEDFIVLP---GVGHCPQDEAPELVNPL--IESFVAR 293 (294)
T ss_pred --CCccceEEeC---CCCCChhhhCHHHHHHH--HHHHHhc
Confidence 2234567776 89998765555554443 5677754
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-11 Score=126.31 Aligned_cols=119 Identities=19% Similarity=0.241 Sum_probs=89.6
Q ss_pred CeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcCh
Q 004368 496 GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNT 575 (758)
Q Consensus 496 G~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~ 575 (758)
...+|+.++.|... ++.|+||++||..+. ...|......|+++||+|+.+|++|.+.. .....
T Consensus 36 ~~~~p~~v~~P~~~----g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~ 98 (313)
T PLN00021 36 SPPKPLLVATPSEA----GTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLAGP-----------DGTDE 98 (313)
T ss_pred CCCceEEEEeCCCC----CCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcCCC-----------Cchhh
Confidence 34689998888653 679999999996543 23455666788999999999999874321 11234
Q ss_pred HhHHHHHHHHHHHc--------CCCCCCcEEEEEeChhHHHHHHHHhhCCC-----ceeEEEEcCCccc
Q 004368 576 FTDFIACAEYLIKN--------CYCTKEKLCIEGRSAGGLLIGAVLNMRPD-----LFKAAVAAVPFVD 631 (758)
Q Consensus 576 ~~D~~~~~~~l~~~--------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----~f~a~v~~~~~~d 631 (758)
++|..++++|+.+. ...|.++++++|||+||+++..++..+++ .|+++|+..|+..
T Consensus 99 i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g 167 (313)
T PLN00021 99 IKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDG 167 (313)
T ss_pred HHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccc
Confidence 56777778887652 34678999999999999999999988875 5788888888754
|
|
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=124.40 Aligned_cols=240 Identities=20% Similarity=0.216 Sum_probs=141.0
Q ss_pred EeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccc
Q 004368 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 569 (758)
Q Consensus 490 ~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~ 569 (758)
.+...||..+-....-++. +...|+||..||--|++.++.-......+.++||.|+++|.||.++.-..- ..
T Consensus 53 ~v~~pdg~~~~ldw~~~p~----~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~----p~ 124 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPR----AAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTS----PR 124 (345)
T ss_pred EEEcCCCCEEEEeeccCcc----ccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccC----cc
Confidence 4445566655554444332 245699999999777766662233345777899999999999988643210 01
Q ss_pred cCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCC---ceeEEEEcCCccchhhc--c--------
Q 004368 570 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAVPFVDVLTT--M-------- 636 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~~~~d~~~~--~-------- 636 (758)
.......+|+..++++|.+++. +.++.++|.|.||.+.+..+.+..+ +-+|++..+|+ |+... .
T Consensus 125 ~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~-Dl~~~~~~l~~~~s~~ 201 (345)
T COG0429 125 LYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPF-DLEACAYRLDSGFSLR 201 (345)
T ss_pred eecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHH-HHHHHHHHhcCchhhh
Confidence 1112334899999999998765 6899999999999554444443322 33555555553 43110 0
Q ss_pred --------------------CCCCCCCChhh-------hhccCC----C--CCHHHHHHHHhcCcccccCCCCCCeEEEe
Q 004368 637 --------------------LDPTIPLTTAE-------WEEWGD----P--WKEEFYFYMKSYSPVDNVKAQNYPHILVT 683 (758)
Q Consensus 637 --------------------~~~~~~~~~~~-------~~e~g~----p--~~~~~~~~l~~~sp~~~i~~~~~P~~Li~ 683 (758)
+..++|.+..+ ..||-+ | .-++..+|.+..|++..+.+++.| +||+
T Consensus 202 ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~Ir~P-tLii 280 (345)
T COG0429 202 LYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPLLPKIRKP-TLII 280 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhccccccccccccc-eEEE
Confidence 01122222000 012211 1 122334566889999999999999 9999
Q ss_pred ccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCC----hHHHHHHHHHHHHHHHHhcC
Q 004368 684 AGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG----RFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 684 ~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~~fl~~~l~ 748 (758)
|+.+|+.+++..--+.-.. .+. .+.|.....+||.+.-+ ....+.+ ..+.+||...+.
T Consensus 281 ~A~DDP~~~~~~iP~~~~~---~np---~v~l~~t~~GGHvGfl~~~~~~~~~W~~-~ri~~~l~~~~~ 342 (345)
T COG0429 281 NAKDDPFMPPEVIPKLQEM---LNP---NVLLQLTEHGGHVGFLGGKLLHPQMWLE-QRILDWLDPFLE 342 (345)
T ss_pred ecCCCCCCChhhCCcchhc---CCC---ceEEEeecCCceEEeccCccccchhhHH-HHHHHHHHHHHh
Confidence 9999999986332222111 222 23444445899965321 2221222 346788877654
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=122.43 Aligned_cols=128 Identities=20% Similarity=0.245 Sum_probs=99.5
Q ss_pred CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHH-cCcEEEEEecCCCCCCchhHHhcccccC--
Q 004368 495 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLK-- 571 (758)
Q Consensus 495 dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~~~~~-- 571 (758)
+|...+.+++.|++. + ...|+||+.||+.+......-..-+..+++ .||.|++|| ++...|...+...+
T Consensus 43 ~g~~r~y~l~vP~g~-~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPd-----g~~~~wn~~~~~~~~~ 114 (312)
T COG3509 43 NGLKRSYRLYVPPGL-P--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPD-----GYDRAWNANGCGNWFG 114 (312)
T ss_pred CCCccceEEEcCCCC-C--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcC-----ccccccCCCcccccCC
Confidence 566788998999886 2 344999999998765433222233456766 499999994 56666654444333
Q ss_pred ------CcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc
Q 004368 572 ------KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 572 ------~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
+..++..+.+.++.|+.+.-+||.||.|.|.|+||.|+.+++..+|++|+|+...++..
T Consensus 115 p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 115 PADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred cccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 34567778889999999999999999999999999999999999999999998888765
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-12 Score=124.94 Aligned_cols=177 Identities=19% Similarity=0.188 Sum_probs=120.0
Q ss_pred CCCeEEEEEEEeeccccccCCCC-CEEEEecCCCccCCCCCCChH-----HHHHH--HcCcEEEEEecCCCCCCchhHHh
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSD-PLLLYGYGSYEICNDPAFNSS-----RLSLL--DRGFIFAIAQIRGGGELGRQWYE 565 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~-P~vl~~hGg~~~~~~~~~~~~-----~~~l~--~~G~~v~~~~~RG~g~~G~~~~~ 565 (758)
.-|.+++..++.|++. .+++++ |++|+.||+...+... .... +..|+ +-++-|+.|.+- .-|.+
T Consensus 169 ~tgneLkYrly~Pkdy-~pdkky~PLvlfLHgagq~g~dn-~~~l~sg~gaiawa~pedqcfVlAPQy~------~if~d 240 (387)
T COG4099 169 STGNELKYRLYTPKDY-APDKKYYPLVLFLHGAGQGGSDN-DKVLSSGIGAIAWAGPEDQCFVLAPQYN------PIFAD 240 (387)
T ss_pred ccCceeeEEEeccccc-CCCCccccEEEEEecCCCCCchh-hhhhhcCccceeeecccCceEEEccccc------ccccc
Confidence 4577899999999998 888887 9999999974433221 1000 11111 123445544421 11111
Q ss_pred cccccCCcChHhHHHHHHH-HHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCC
Q 004368 566 NGKFLKKKNTFTDFIACAE-YLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLT 644 (758)
Q Consensus 566 ~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~ 644 (758)
.. .+-.+-....++.+. -|.++..+|.+||.++|.|.||+.+.+++.++||.|+|++..+|=-|-
T Consensus 241 ~e--~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~------------ 306 (387)
T COG4099 241 SE--EKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR------------ 306 (387)
T ss_pred cc--cccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch------------
Confidence 10 111222344555555 678889999999999999999999999999999999999988873220
Q ss_pred hhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEE
Q 004368 645 TAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 716 (758)
Q Consensus 645 ~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 716 (758)
+ + ..+++. +.| +.|.|+.+|.++|...++-.+++|++.+.+++..-|.
T Consensus 307 ---------v-------~--lv~~lk-----~~p-iWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 307 ---------V-------Y--LVRTLK-----KAP-IWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred ---------h-------h--hhhhhc-----cCc-eEEEEecCCCccccCcceeehHHHHhhccccchhhhh
Confidence 0 0 011111 355 9999999999999999999999999988766555444
|
|
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-12 Score=122.04 Aligned_cols=170 Identities=15% Similarity=0.094 Sum_probs=104.6
Q ss_pred CEEEEecCCCccCCCCCCChH--HHHHHH--cCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCC
Q 004368 517 PLLLYGYGSYEICNDPAFNSS--RLSLLD--RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 592 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~--~~~l~~--~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 592 (758)
|.||++||-.++.. .|... ...+.+ .+|.|+.+|.||.+ ++..+.++.++++.
T Consensus 2 p~illlHGf~ss~~--~~~~~~~~~~l~~~~~~~~v~~~dl~g~~-------------------~~~~~~l~~l~~~~-- 58 (190)
T PRK11071 2 STLLYLHGFNSSPR--SAKATLLKNWLAQHHPDIEMIVPQLPPYP-------------------ADAAELLESLVLEH-- 58 (190)
T ss_pred CeEEEECCCCCCcc--hHHHHHHHHHHHHhCCCCeEEeCCCCCCH-------------------HHHHHHHHHHHHHc--
Confidence 78999999433322 23322 233434 38999999999753 24555556655543
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCccccc
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV 672 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i 672 (758)
+.+++.++|+|+||+++..++.++|. + +|+.+|..+....... -.......+..-+.....+.++.++.+.+.. +
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-i 133 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTD-YLGENENPYTGQQYVLESRHIYDLKVMQIDP-L 133 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHH-hcCCcccccCCCcEEEcHHHHHHHHhcCCcc-C
Confidence 23689999999999999999999883 3 4566666664222110 0000000000000112345555555555444 3
Q ss_pred CCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC
Q 004368 673 KAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 673 ~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 726 (758)
. ...| ++|+||++|..||+.++.+++++. +.++++ +++|.+.
T Consensus 134 ~-~~~~-v~iihg~~De~V~~~~a~~~~~~~-------~~~~~~---ggdH~f~ 175 (190)
T PRK11071 134 E-SPDL-IWLLQQTGDEVLDYRQAVAYYAAC-------RQTVEE---GGNHAFV 175 (190)
T ss_pred C-Chhh-EEEEEeCCCCcCCHHHHHHHHHhc-------ceEEEC---CCCcchh
Confidence 3 4555 899999999999999999999842 344554 9999873
|
|
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.2e-12 Score=135.85 Aligned_cols=145 Identities=21% Similarity=0.267 Sum_probs=95.2
Q ss_pred CCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCC----hHHHHHHHcCcEEEEEecCCC
Q 004368 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN----SSRLSLLDRGFIFAIAQIRGG 556 (758)
Q Consensus 481 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~----~~~~~l~~~G~~v~~~~~RG~ 556 (758)
..+|.+|+..+++.||..|.+.-+.+........+.|.|++.||....+..+... .....|+++||.|..+|.||.
T Consensus 39 ~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~ 118 (395)
T PLN02872 39 PAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGT 118 (395)
T ss_pred HcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCccccccccc
Confidence 3478889999999999988776543222101123468899999976555443222 233457889999999999997
Q ss_pred CC-CchhHHhcc-c----ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCC---ceeEEEEcC
Q 004368 557 GE-LGRQWYENG-K----FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAV 627 (758)
Q Consensus 557 g~-~G~~~~~~~-~----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~ 627 (758)
+. +|....... . ..+......|+.++++++.+.. .+++.++|+|+||.++.+++ .+|+ +++++++.+
T Consensus 119 ~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~ 194 (395)
T PLN02872 119 RWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLC 194 (395)
T ss_pred ccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhc
Confidence 63 232111110 0 1111233469999999997653 37899999999999988666 4676 466666666
Q ss_pred Cc
Q 004368 628 PF 629 (758)
Q Consensus 628 ~~ 629 (758)
|+
T Consensus 195 P~ 196 (395)
T PLN02872 195 PI 196 (395)
T ss_pred ch
Confidence 64
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.1e-12 Score=130.34 Aligned_cols=206 Identities=18% Similarity=0.203 Sum_probs=122.2
Q ss_pred CEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCc
Q 004368 517 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 596 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 596 (758)
|.||++||..+... .|...+..| .++|.|+++|+||+|.+... ....+++++.+.++.+++. .+.++
T Consensus 26 ~plvllHG~~~~~~--~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~--------~~~~~~~~~~~~~~~~i~~--l~~~~ 92 (276)
T TIGR02240 26 TPLLIFNGIGANLE--LVFPFIEAL-DPDLEVIAFDVPGVGGSSTP--------RHPYRFPGLAKLAARMLDY--LDYGQ 92 (276)
T ss_pred CcEEEEeCCCcchH--HHHHHHHHh-ccCceEEEECCCCCCCCCCC--------CCcCcHHHHHHHHHHHHHH--hCcCc
Confidence 67899999544332 344444444 45899999999999976421 1123455555555544444 23468
Q ss_pred EEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchh------h---ccCCCC--C-CCCh-hh-hhccC-----CCCC-
Q 004368 597 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVL------T---TMLDPT--I-PLTT-AE-WEEWG-----DPWK- 656 (758)
Q Consensus 597 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~------~---~~~~~~--~-~~~~-~~-~~e~g-----~p~~- 656 (758)
+.++|+|+||++++.++.++|++++++|+.++..... . .+.... . +... .. ...++ ++..
T Consensus 93 ~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (276)
T TIGR02240 93 VNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQPSHGIHIAPDIYGGAFRRDPELA 172 (276)
T ss_pred eEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhccccccchhhhhccceeeccchhh
Confidence 9999999999999999999999999999988764311 0 000000 0 0000 00 00000 0100
Q ss_pred -------------HHHHHHHHh--cCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCC
Q 004368 657 -------------EEFYFYMKS--YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 721 (758)
Q Consensus 657 -------------~~~~~~l~~--~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 721 (758)
...+..+.. ......++++++| +|+++|++|+.||+.++.++.+.+.. .++++++ +
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~v~~~~~~~l~~~~~~----~~~~~i~---~- 243 (276)
T TIGR02240 173 MAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQP-TLVLAGDDDPIIPLINMRLLAWRIPN----AELHIID---D- 243 (276)
T ss_pred hhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCC-EEEEEeCCCCcCCHHHHHHHHHhCCC----CEEEEEc---C-
Confidence 001111111 1122335677898 99999999999999988888776542 3455663 4
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 722 GHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 722 gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
||.......+.+.+. +.+|+.+.
T Consensus 244 gH~~~~e~p~~~~~~--i~~fl~~~ 266 (276)
T TIGR02240 244 GHLFLITRAEAVAPI--IMKFLAEE 266 (276)
T ss_pred CCchhhccHHHHHHH--HHHHHHHh
Confidence 998765555544443 56777654
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-11 Score=126.37 Aligned_cols=206 Identities=17% Similarity=0.180 Sum_probs=121.1
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|+||++||..+.. ..|......| .++|.|+.+|+||.|...... ....+++++.+.+..++++- +.+
T Consensus 28 ~~~vv~~hG~~~~~--~~~~~~~~~l-~~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~l~~~i~~~--~~~ 95 (278)
T TIGR03056 28 GPLLLLLHGTGAST--HSWRDLMPPL-ARSFRVVAPDLPGHGFTRAPF-------RFRFTLPSMAEDLSALCAAE--GLS 95 (278)
T ss_pred CCeEEEEcCCCCCH--HHHHHHHHHH-hhCcEEEeecCCCCCCCCCcc-------ccCCCHHHHHHHHHHHHHHc--CCC
Confidence 58999999965432 2344444444 557999999999998654221 11345677777666666542 336
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCC----------CCCCh----------hhhh----cc
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPT----------IPLTT----------AEWE----EW 651 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~----------~~~~~----------~~~~----e~ 651 (758)
++.++|+|+||.+++.++.++|++++++|+.++..+......... .++.. ..+. ..
T Consensus 96 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (278)
T TIGR03056 96 PDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRDT 175 (278)
T ss_pred CceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhcc
Confidence 789999999999999999999998888887766443211000000 00000 0000 00
Q ss_pred CCCCCH---HHH--------------HHHHhcCc---ccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCc
Q 004368 652 GDPWKE---EFY--------------FYMKSYSP---VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN 711 (758)
Q Consensus 652 g~p~~~---~~~--------------~~l~~~sp---~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~ 711 (758)
+...++ ..+ ..+..++. ...++++++| +|+++|++|..||+..++++.+.+. ..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~lii~g~~D~~vp~~~~~~~~~~~~----~~~ 250 (278)
T TIGR03056 176 GSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIP-LHLIAGEEDKAVPPDESKRAATRVP----TAT 250 (278)
T ss_pred ccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCC-EEEEEeCCCcccCHHHHHHHHHhcc----CCe
Confidence 010000 001 11111111 1234566888 9999999999999988877766553 234
Q ss_pred eEEEEecCCCCCCCCCChHHHHHHHHHHHHHH
Q 004368 712 ILLFKCELGAGHFSKSGRFERLREAAFTYTFL 743 (758)
Q Consensus 712 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 743 (758)
++.++ ++||.......+.+.+. +.+||
T Consensus 251 ~~~~~---~~gH~~~~e~p~~~~~~--i~~f~ 277 (278)
T TIGR03056 251 LHVVP---GGGHLVHEEQADGVVGL--ILQAA 277 (278)
T ss_pred EEEEC---CCCCcccccCHHHHHHH--HHHHh
Confidence 56665 88998764444433332 34554
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-11 Score=126.70 Aligned_cols=107 Identities=17% Similarity=0.101 Sum_probs=74.8
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHH-cCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
+.|.||++||+++.... +......++. .||.|+.+|.||.|...... ......+++++.+.+..+++.- +
T Consensus 24 ~~~~vl~~hG~~g~~~~--~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~ 94 (288)
T TIGR01250 24 EKIKLLLLHGGPGMSHE--YLENLRELLKEEGREVIMYDQLGCGYSDQPD-----DSDELWTIDYFVDELEEVREKL--G 94 (288)
T ss_pred CCCeEEEEcCCCCccHH--HHHHHHHHHHhcCCEEEEEcCCCCCCCCCCC-----cccccccHHHHHHHHHHHHHHc--C
Confidence 35788999998776432 2223344444 49999999999988653210 0010234566666666665543 3
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
.+++.++|+|+||.++..++.++|++++++|+.+++.
T Consensus 95 ~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (288)
T TIGR01250 95 LDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLD 131 (288)
T ss_pred CCcEEEEEeehHHHHHHHHHHhCccccceeeEecccc
Confidence 4679999999999999999999999999999877653
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-11 Score=127.92 Aligned_cols=122 Identities=19% Similarity=0.148 Sum_probs=81.2
Q ss_pred EeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccc
Q 004368 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 569 (758)
Q Consensus 490 ~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~ 569 (758)
++...||.+|.... .+ . ...+.||++||+++.... ......+..++|.|+.+|+||.|..... .
T Consensus 8 ~~~~~~~~~l~y~~---~g--~--~~~~~lvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~G~S~~~------~ 71 (306)
T TIGR01249 8 YLNVSDNHQLYYEQ---SG--N--PDGKPVVFLHGGPGSGTD---PGCRRFFDPETYRIVLFDQRGCGKSTPH------A 71 (306)
T ss_pred eEEcCCCcEEEEEE---Cc--C--CCCCEEEEECCCCCCCCC---HHHHhccCccCCEEEEECCCCCCCCCCC------C
Confidence 34455777765432 11 1 124568999997665432 1222334457999999999998865421 0
Q ss_pred cCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 570 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
......+.|+.+.+..+.+.- +.+++.++|+|+||+++..++.++|++++++|+..++
T Consensus 72 ~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~ 129 (306)
T TIGR01249 72 CLEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIF 129 (306)
T ss_pred CcccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccc
Confidence 111234567777777766552 3468999999999999999999999999988877654
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-11 Score=126.59 Aligned_cols=131 Identities=14% Similarity=0.023 Sum_probs=91.7
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC--CCCChHHHHHHHcCcEEEEEecCCCCCCchhHH
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND--PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 564 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~--~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~ 564 (758)
+.+.+.. +|..+.+.+..|.+. +.+.||++|||...... ..+...+..|+++||.|+.+|+||+|......
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~-----~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~- 75 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS-----HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGEN- 75 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC-----CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC-
Confidence 3455654 567799988887643 23567777876553322 22333456788899999999999999754221
Q ss_pred hcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccc
Q 004368 565 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 631 (758)
Q Consensus 565 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 631 (758)
..-....+|+.+++++|.++. ...++|.++|+|+||++++.++.. ++.++++|+.+|++.
T Consensus 76 -----~~~~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~ 135 (274)
T TIGR03100 76 -----LGFEGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVR 135 (274)
T ss_pred -----CCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccC
Confidence 111234579999999998752 123679999999999998888764 568999999998744
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-11 Score=117.80 Aligned_cols=187 Identities=18% Similarity=0.212 Sum_probs=123.0
Q ss_pred CCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchh---HHhcccccCC--cChHhHHHHHHHHHH
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ---WYENGKFLKK--KNTFTDFIACAEYLI 587 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~---~~~~~~~~~~--~~~~~D~~~~~~~l~ 587 (758)
+...|+||+.||- | .....|.+ +..+..-.+.++.++-+-.-+.+.. |...+....+ ......+.+.++.++
T Consensus 15 ~p~~~~iilLHG~-G-gde~~~~~-~~~~~~P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~ 91 (207)
T COG0400 15 DPAAPLLILLHGL-G-GDELDLVP-LPELILPNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELA 91 (207)
T ss_pred CCCCcEEEEEecC-C-CChhhhhh-hhhhcCCCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHH
Confidence 3457899999993 3 34444555 3333333466666654322222233 3332222211 122344555666667
Q ss_pred HcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcC
Q 004368 588 KNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYS 667 (758)
Q Consensus 588 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~s 667 (758)
.+..+|++|+.+.|+|.|+.+++.++.++|++|+++|+..|..=... .
T Consensus 92 ~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~--------------------------------~ 139 (207)
T COG0400 92 EEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP--------------------------------E 139 (207)
T ss_pred HHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC--------------------------------c
Confidence 77788999999999999999999999999999999999888532100 0
Q ss_pred cccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 004368 668 PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 668 p~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 747 (758)
+..+.+ ..| +|++||..|++||..++.++.+.|++.|.+++...+ ..||.... ..+ ....+|+.+.+
T Consensus 140 ~~~~~~--~~p-ill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~----~~GH~i~~---e~~---~~~~~wl~~~~ 206 (207)
T COG0400 140 LLPDLA--GTP-ILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWH----EGGHEIPP---EEL---EAARSWLANTL 206 (207)
T ss_pred cccccC--CCe-EEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEe----cCCCcCCH---HHH---HHHHHHHHhcc
Confidence 000111 345 999999999999999999999999999988876666 38997542 222 23456887654
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-10 Score=118.06 Aligned_cols=214 Identities=14% Similarity=0.031 Sum_probs=132.8
Q ss_pred EEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCC--CCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhc
Q 004368 489 KWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN--DPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 566 (758)
Q Consensus 489 ~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~--~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~ 566 (758)
+.+++..|. +.+++..|.+. ++.|+||++||..+... ...|......|+++||.|+.+|+||+|........
T Consensus 3 ~~l~~~~g~-~~~~~~~p~~~----~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~- 76 (266)
T TIGR03101 3 FFLDAPHGF-RFCLYHPPVAV----GPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAA- 76 (266)
T ss_pred EEecCCCCc-EEEEEecCCCC----CCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccc-
Confidence 456666775 55654444432 34789999999432211 12233345678889999999999999876432211
Q ss_pred ccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc----------
Q 004368 567 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM---------- 636 (758)
Q Consensus 567 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~---------- 636 (758)
..-..-.+|+.+++++|.+.+ .++|.++|+|+||.++..++.++|+.++++|+.+|+++...++
T Consensus 77 ---~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~~~ 150 (266)
T TIGR03101 77 ---ARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRLVA 150 (266)
T ss_pred ---CCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHHHH
Confidence 111123588999999998764 4789999999999999999999999999999999987732221
Q ss_pred --CCCCCCC---------Chhhhhc-cCCCCCHHHHHHHHhcCcccccCCCCCCeEEEecc-CCCCCCCChHHHHHHHHH
Q 004368 637 --LDPTIPL---------TTAEWEE-WGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAG-LNDPRVMYSEPAKFVAKL 703 (758)
Q Consensus 637 --~~~~~~~---------~~~~~~e-~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G-~~D~~V~~~~~~~~~~~L 703 (758)
+....+. ...+.-+ .|..-.++.-..|.+.+...-+.. .. .+|++.- ..+..-......++++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 228 (266)
T TIGR03101 151 RRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK-NC-PVHWFEVRPEEGATLSPVFSRLGEQW 228 (266)
T ss_pred HhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC-CC-ceEEEEeccccCCCCCHHHHHHHHHH
Confidence 1100000 0000011 133334444445554433222222 22 3566544 333334555778999999
Q ss_pred HhcCCCCceEEEE
Q 004368 704 REMKTDDNILLFK 716 (758)
Q Consensus 704 ~~~~~~~~~~~~~ 716 (758)
++.|+.++...++
T Consensus 229 ~~~g~~v~~~~~~ 241 (266)
T TIGR03101 229 VQSGVEVTVDLVP 241 (266)
T ss_pred HHcCCeEeeeecC
Confidence 9999988877776
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.32 E-value=7e-11 Score=121.72 Aligned_cols=198 Identities=15% Similarity=0.134 Sum_probs=118.5
Q ss_pred EEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC-Cc
Q 004368 518 LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK-EK 596 (758)
Q Consensus 518 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~-~~ 596 (758)
+||++||.... ...|...+..|.++||.|+.+|+||+|.+... .....+++++.+-+..+++. .+. ++
T Consensus 5 ~vvllHG~~~~--~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHG--AWCWYKLATLLDAAGFKSTCVDLTGAGISLTD-------SNTVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCC--cCcHHHHHHHHhhCCceEEEecCCcCCCCCCC-------ccccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 58999996543 33466666777788999999999999976421 11123456666555544443 122 58
Q ss_pred EEEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc---ch-----hhccCCC-------------CCCC----Chhhh-hc
Q 004368 597 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV---DV-----LTTMLDP-------------TIPL----TTAEW-EE 650 (758)
Q Consensus 597 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~---d~-----~~~~~~~-------------~~~~----~~~~~-~e 650 (758)
+.++|+|+||.++..++.++|++++++|+.++.. +. ....... ..+. ....+ ..
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRH 153 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHH
Confidence 9999999999999999999999999888776541 10 0000000 0000 00000 00
Q ss_pred --cCCCCCHHHHHHH-HhcCc--c----------cccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEE
Q 004368 651 --WGDPWKEEFYFYM-KSYSP--V----------DNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 715 (758)
Q Consensus 651 --~g~p~~~~~~~~l-~~~sp--~----------~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 715 (758)
+... ..+.+... ....+ . ....+++.| +|+++|++|..||+..++.+++.+.. .+.+.+
T Consensus 154 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP-~lvi~g~~D~~~~~~~~~~~~~~~~~----a~~~~i 227 (255)
T PLN02965 154 YYYNQS-PLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVP-RVYIKTAKDNLFDPVRQDVMVENWPP----AQTYVL 227 (255)
T ss_pred HHhcCC-CHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCC-EEEEEcCCCCCCCHHHHHHHHHhCCc----ceEEEe
Confidence 1111 11111110 00000 0 122346888 99999999999999888777766543 345666
Q ss_pred EecCCCCCCCCCChHHHHHH
Q 004368 716 KCELGAGHFSKSGRFERLRE 735 (758)
Q Consensus 716 ~~~~~~gH~~~~~~~~~~~~ 735 (758)
+ ++||.....+.+.+..
T Consensus 228 ~---~~GH~~~~e~p~~v~~ 244 (255)
T PLN02965 228 E---DSDHSAFFSVPTTLFQ 244 (255)
T ss_pred c---CCCCchhhcCHHHHHH
Confidence 5 8999876665555544
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-11 Score=124.38 Aligned_cols=208 Identities=15% Similarity=0.141 Sum_probs=116.7
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
...|.||++||.++... .|......| ..+|.|+.+|.||+|+..... ..++.+..+-+..+++. ..
T Consensus 14 ~~~~~iv~lhG~~~~~~--~~~~~~~~l-~~~~~vi~~D~~G~G~s~~~~---------~~~~~~~~~d~~~~l~~--l~ 79 (255)
T PRK10673 14 HNNSPIVLVHGLFGSLD--NLGVLARDL-VNDHDIIQVDMRNHGLSPRDP---------VMNYPAMAQDLLDTLDA--LQ 79 (255)
T ss_pred CCCCCEEEECCCCCchh--HHHHHHHHH-hhCCeEEEECCCCCCCCCCCC---------CCCHHHHHHHHHHHHHH--cC
Confidence 45689999999766543 344444444 468999999999998764310 12334433333222222 23
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcC--Cccchh----------hccCCCCCCC------------Chhhhh
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV--PFVDVL----------TTMLDPTIPL------------TTAEWE 649 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~--~~~d~~----------~~~~~~~~~~------------~~~~~~ 649 (758)
.+++.++|+|+||.++..++.++|++++++|+.. |..... .......... ......
T Consensus 80 ~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (255)
T PRK10673 80 IEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEGVI 159 (255)
T ss_pred CCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHHHH
Confidence 4679999999999999999999999999988753 221100 0000000000 000000
Q ss_pred -----ccCCC----CCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCC
Q 004368 650 -----EWGDP----WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 720 (758)
Q Consensus 650 -----e~g~p----~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 720 (758)
.+... ..+..+........+..+.++++| +|+++|++|+.|+...++.+.+.+ ...++++++ +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~~~---~ 231 (255)
T PRK10673 160 QFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHP-ALFIRGGNSPYVTEAYRDDLLAQF----PQARAHVIA---G 231 (255)
T ss_pred HHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCC-eEEEECCCCCCCCHHHHHHHHHhC----CCcEEEEeC---C
Confidence 00000 001111111122223344556788 999999999999976666665543 234566665 9
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 721 AGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 721 ~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
+||.......+.+.+. +..||.+
T Consensus 232 ~gH~~~~~~p~~~~~~--l~~fl~~ 254 (255)
T PRK10673 232 AGHWVHAEKPDAVLRA--IRRYLND 254 (255)
T ss_pred CCCeeeccCHHHHHHH--HHHHHhc
Confidence 9998655444433332 4567653
|
|
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=121.31 Aligned_cols=103 Identities=15% Similarity=0.092 Sum_probs=74.5
Q ss_pred CEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHH-HHHHHHcCCCCCC
Q 004368 517 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC-AEYLIKNCYCTKE 595 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~ 595 (758)
|+||++||..+... .|......|. +||.|+.+|.||.|+.... ......++++.... +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~~~~--~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGSGA--DWQALIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCchh--hHHHHHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 78999999654433 3555556666 8999999999998876321 11122345555544 4544443 2457
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
++.++|+|+||.++..++.++|+.++++++.++..
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~ 105 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSP 105 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCC
Confidence 89999999999999999999999999999887654
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6e-11 Score=125.11 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=73.8
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
..|.||++||.++... .|...+..|.+++ .|+.+|.||.|.+...- ...++++..+.+..++++- ..
T Consensus 26 ~g~~vvllHG~~~~~~--~w~~~~~~L~~~~-~via~D~~G~G~S~~~~--------~~~~~~~~a~dl~~ll~~l--~~ 92 (295)
T PRK03592 26 EGDPIVFLHGNPTSSY--LWRNIIPHLAGLG-RCLAPDLIGMGASDKPD--------IDYTFADHARYLDAWFDAL--GL 92 (295)
T ss_pred CCCEEEEECCCCCCHH--HHHHHHHHHhhCC-EEEEEcCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHHh--CC
Confidence 3478999999765443 3555666777775 99999999999764321 1123455544444444432 23
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
+++.++|+|+||.++..++.++|++++++|+.+++
T Consensus 93 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~ 127 (295)
T PRK03592 93 DDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAI 127 (295)
T ss_pred CCeEEEEECHHHHHHHHHHHhChhheeEEEEECCC
Confidence 78999999999999999999999999999988763
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-11 Score=129.19 Aligned_cols=212 Identities=17% Similarity=0.225 Sum_probs=121.8
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++||..+.. ..|...+..|. .+|.|+.+|+||.|..... .....+++++.+.+..+++. ...+
T Consensus 88 gp~lvllHG~~~~~--~~w~~~~~~L~-~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~~l~~~l~~--l~~~ 155 (360)
T PLN02679 88 GPPVLLVHGFGASI--PHWRRNIGVLA-KNYTVYAIDLLGFGASDKP-------PGFSYTMETWAELILDFLEE--VVQK 155 (360)
T ss_pred CCeEEEECCCCCCH--HHHHHHHHHHh-cCCEEEEECCCCCCCCCCC-------CCccccHHHHHHHHHHHHHH--hcCC
Confidence 37899999965432 23555555554 5899999999999876421 00122345555544333332 1237
Q ss_pred cEEEEEeChhHHHHHHHHh-hCCCceeEEEEcCCccchhhc------c---CCCC---------CCC-C---------hh
Q 004368 596 KLCIEGRSAGGLLIGAVLN-MRPDLFKAAVAAVPFVDVLTT------M---LDPT---------IPL-T---------TA 646 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~~~~d~~~~------~---~~~~---------~~~-~---------~~ 646 (758)
++.++|+|+||+++..++. ++|++++++|+.++....... . .... .+. . ..
T Consensus 156 ~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (360)
T PLN02679 156 PTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRD 235 (360)
T ss_pred CeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHH
Confidence 8999999999999887776 479999999987753211000 0 0000 000 0 00
Q ss_pred hh-----hccCCCC--CHHH----------------HHHHHh----cCcccccCCCCCCeEEEeccCCCCCCCChHH-HH
Q 004368 647 EW-----EEWGDPW--KEEF----------------YFYMKS----YSPVDNVKAQNYPHILVTAGLNDPRVMYSEP-AK 698 (758)
Q Consensus 647 ~~-----~e~g~p~--~~~~----------------~~~l~~----~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~-~~ 698 (758)
.. .-++++. .++. +..+.. .+....+.++++| +||++|++|..+|+..+ .+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-tLii~G~~D~~~p~~~~~~~ 314 (360)
T PLN02679 236 NLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLP-ILVLWGDQDPFTPLDGPVGK 314 (360)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCC-EEEEEeCCCCCcCchhhHHH
Confidence 00 0011110 1111 111111 1112345567888 99999999999998753 34
Q ss_pred HHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 699 FVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 699 ~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
++++|.+.-.+.++++++ ++||.......+.+.+. +.+||.+
T Consensus 315 ~~~~l~~~ip~~~l~~i~---~aGH~~~~E~Pe~~~~~--I~~FL~~ 356 (360)
T PLN02679 315 YFSSLPSQLPNVTLYVLE---GVGHCPHDDRPDLVHEK--LLPWLAQ 356 (360)
T ss_pred HHHhhhccCCceEEEEcC---CCCCCccccCHHHHHHH--HHHHHHh
Confidence 555665544455666776 99998766666655543 5678764
|
|
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=121.28 Aligned_cols=198 Identities=21% Similarity=0.230 Sum_probs=132.0
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccc--cCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhH
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVK--LDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 563 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~--~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~ 563 (758)
-++..++..||..+-..++.+.+... ..+..|+||++||-.|.+....-........++||.+++.|.||.++.--.-
T Consensus 93 y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtT 172 (409)
T KOG1838|consen 93 YTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTT 172 (409)
T ss_pred ceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCC
Confidence 35666777898889888776655311 1256799999999777766532233334556689999999999976532111
Q ss_pred HhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCC---CceeEEEEcCCccchh--h-cc-
Q 004368 564 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVAAVPFVDVL--T-TM- 636 (758)
Q Consensus 564 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~~~~d~~--~-~~- 636 (758)
. .......-+|+.++++++.++.- ..++.++|.|+||.+....+.+.. .+.+|+++.+|+ |.+ . .+
T Consensus 173 p----r~f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pw-d~~~~~~~~~ 245 (409)
T KOG1838|consen 173 P----RLFTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPW-DLLAASRSIE 245 (409)
T ss_pred C----ceeecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccc-hhhhhhhHHh
Confidence 0 11112234899999999988753 247999999999999988888753 366777777776 321 0 00
Q ss_pred -----------CCCCCC-----------------------CChhhhh------ccCCCCCHHHHHHHHhcCcccccCCCC
Q 004368 637 -----------LDPTIP-----------------------LTTAEWE------EWGDPWKEEFYFYMKSYSPVDNVKAQN 676 (758)
Q Consensus 637 -----------~~~~~~-----------------------~~~~~~~------e~g~p~~~~~~~~l~~~sp~~~i~~~~ 676 (758)
+...+. .+..+++ .+|-+...+ |.++.|+...+++++
T Consensus 246 ~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~de---YY~~aSs~~~v~~I~ 322 (409)
T KOG1838|consen 246 TPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDE---YYKKASSSNYVDKIK 322 (409)
T ss_pred cccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHH---HHhhcchhhhccccc
Confidence 000000 1112222 245554333 457889999999999
Q ss_pred CCeEEEeccCCCCCCCCh
Q 004368 677 YPHILVTAGLNDPRVMYS 694 (758)
Q Consensus 677 ~P~~Li~~G~~D~~V~~~ 694 (758)
.| +|++++.+|+.||..
T Consensus 323 VP-~L~ina~DDPv~p~~ 339 (409)
T KOG1838|consen 323 VP-LLCINAADDPVVPEE 339 (409)
T ss_pred cc-EEEEecCCCCCCCcc
Confidence 99 999999999999863
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-11 Score=123.45 Aligned_cols=193 Identities=16% Similarity=0.110 Sum_probs=112.9
Q ss_pred CEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCc
Q 004368 517 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 596 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 596 (758)
|.||++||..+. ...|......| ..+|.|+.+|+||.|..... ...+++++ ++.+.+.. .++
T Consensus 5 ~~iv~~HG~~~~--~~~~~~~~~~l-~~~~~vi~~d~~G~G~s~~~---------~~~~~~~~---~~~~~~~~---~~~ 66 (245)
T TIGR01738 5 VHLVLIHGWGMN--AEVFRCLDEEL-SAHFTLHLVDLPGHGRSRGF---------GPLSLADA---AEAIAAQA---PDP 66 (245)
T ss_pred ceEEEEcCCCCc--hhhHHHHHHhh-ccCeEEEEecCCcCccCCCC---------CCcCHHHH---HHHHHHhC---CCC
Confidence 789999995332 23354444444 45799999999998875321 11234444 44444332 368
Q ss_pred EEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh--ccC---------------CCCCCCChhhh---hccCCCCC
Q 004368 597 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT--TML---------------DPTIPLTTAEW---EEWGDPWK 656 (758)
Q Consensus 597 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~--~~~---------------~~~~~~~~~~~---~e~g~p~~ 656 (758)
+.++|+|+||+++..++.++|++++++|+.++...+.. .+. ..........+ ...+.+..
T Consensus 67 ~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (245)
T TIGR01738 67 AIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPTA 146 (245)
T ss_pred eEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999887655321110 000 00000000000 00111110
Q ss_pred H----------------------HHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEE
Q 004368 657 E----------------------EFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILL 714 (758)
Q Consensus 657 ~----------------------~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~ 714 (758)
. ..+..+...+....+.++++| +|+++|.+|..||+...+.+.+.+. +.+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~ 221 (245)
T TIGR01738 147 RQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVP-FLRLYGYLDGLVPAKVVPYLDKLAP----HSELYI 221 (245)
T ss_pred chHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCC-EEEEeecCCcccCHHHHHHHHHhCC----CCeEEE
Confidence 0 001111112222345677888 9999999999999888777766553 345666
Q ss_pred EEecCCCCCCCCCChHHHHHH
Q 004368 715 FKCELGAGHFSKSGRFERLRE 735 (758)
Q Consensus 715 ~~~~~~~gH~~~~~~~~~~~~ 735 (758)
++ ++||.......+.+.+
T Consensus 222 ~~---~~gH~~~~e~p~~~~~ 239 (245)
T TIGR01738 222 FA---KAAHAPFLSHAEAFCA 239 (245)
T ss_pred eC---CCCCCccccCHHHHHH
Confidence 75 8999876555554444
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-10 Score=125.20 Aligned_cols=107 Identities=18% Similarity=0.133 Sum_probs=69.6
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHH-HHHHHcCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACA-EYLIKNCYC 592 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~ 592 (758)
+..|+||++||..+.. ..|...+..|. ++|.|+.+|+||.|.....-.. ........+.+++.+ +++...
T Consensus 103 ~~~p~vvllHG~~~~~--~~~~~~~~~L~-~~~~vi~~D~rG~G~S~~~~~~---~~~~~~~~~~~~~~i~~~~~~l--- 173 (402)
T PLN02894 103 EDAPTLVMVHGYGASQ--GFFFRNFDALA-SRFRVIAIDQLGWGGSSRPDFT---CKSTEETEAWFIDSFEEWRKAK--- 173 (402)
T ss_pred CCCCEEEEECCCCcch--hHHHHHHHHHH-hCCEEEEECCCCCCCCCCCCcc---cccHHHHHHHHHHHHHHHHHHc---
Confidence 3568999999954422 22334444554 4699999999999876432100 000001112233333 344333
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
+.+++.++|||+||++++.++.++|+.++++|+.+|.
T Consensus 174 ~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 174 NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 3468999999999999999999999999998888664
|
|
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=128.61 Aligned_cols=124 Identities=13% Similarity=0.120 Sum_probs=81.4
Q ss_pred eeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChH-HHHHH---HcCcEEEEEecCCCCCCchhHHhc
Q 004368 491 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSS-RLSLL---DRGFIFAIAQIRGGGELGRQWYEN 566 (758)
Q Consensus 491 ~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~-~~~l~---~~G~~v~~~~~RG~g~~G~~~~~~ 566 (758)
|.+..|.+++...--|++. ...|.||++||..+... .|... +..|. .+||.|+.+|+||+|.....
T Consensus 180 ~~~~~~~~l~~~~~gp~~~----~~k~~VVLlHG~~~s~~--~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p---- 249 (481)
T PLN03087 180 WLSSSNESLFVHVQQPKDN----KAKEDVLFIHGFISSSA--FWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKP---- 249 (481)
T ss_pred eEeeCCeEEEEEEecCCCC----CCCCeEEEECCCCccHH--HHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCC----
Confidence 3334456666654444432 22478999999654432 23322 23333 47999999999999876431
Q ss_pred ccccCCcChHhHHHHHHH-HHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 567 GKFLKKKNTFTDFIACAE-YLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 567 ~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
.....++++..+.+. .+++.- ..+++.++|+|+||+++..++.++|++++++|+.+|.
T Consensus 250 ---~~~~ytl~~~a~~l~~~ll~~l--g~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~ 308 (481)
T PLN03087 250 ---ADSLYTLREHLEMIERSVLERY--KVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPP 308 (481)
T ss_pred ---CCCcCCHHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCC
Confidence 111234566666553 444432 3478999999999999999999999999999988754
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.5e-11 Score=128.75 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=75.8
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
+..|.||++||..+... .|...... +.++|.|+.+|+||+|..... ....++.++.+.+..++++ .+
T Consensus 129 ~~~~~vl~~HG~~~~~~--~~~~~~~~-l~~~~~v~~~d~~g~G~s~~~--------~~~~~~~~~~~~~~~~~~~--~~ 195 (371)
T PRK14875 129 GDGTPVVLIHGFGGDLN--NWLFNHAA-LAAGRPVIALDLPGHGASSKA--------VGAGSLDELAAAVLAFLDA--LG 195 (371)
T ss_pred CCCCeEEEECCCCCccc--hHHHHHHH-HhcCCEEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cC
Confidence 34588999998544332 23333344 445799999999999976421 1234567777777766654 45
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
+.++.++|+|+||+++..++.++|++++++|+.+|.
T Consensus 196 ~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~ 231 (371)
T PRK14875 196 IERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPA 231 (371)
T ss_pred CccEEEEeechHHHHHHHHHHhCchheeEEEEECcC
Confidence 678999999999999999999999999999988765
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=126.25 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=75.4
Q ss_pred CCEEEEecCCCccCCCC---------CCChHH---HHHHHcCcEEEEEecCC--CCCCch-hHHhcccc---cCCcChHh
Q 004368 516 DPLLLYGYGSYEICNDP---------AFNSSR---LSLLDRGFIFAIAQIRG--GGELGR-QWYENGKF---LKKKNTFT 577 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~---------~~~~~~---~~l~~~G~~v~~~~~RG--~g~~G~-~~~~~~~~---~~~~~~~~ 577 (758)
.|.||++||-.+..... .|...+ ..|..++|.|+.+|+|| +|..+. ++...+.. .....+++
T Consensus 31 ~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 110 (351)
T TIGR01392 31 SNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIR 110 (351)
T ss_pred CCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHH
Confidence 47899999955533111 122222 25667899999999999 454442 22211211 11135678
Q ss_pred HHHHHHHHHHHcCCCCCCc-EEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 578 DFIACAEYLIKNCYCTKEK-LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 578 D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
|+.+.+..++++- .-++ +.++|+|+||.++..++.++|++++++|+.++.
T Consensus 111 ~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 161 (351)
T TIGR01392 111 DDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATS 161 (351)
T ss_pred HHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccC
Confidence 8887776665543 2367 999999999999999999999999988887664
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=125.42 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=76.5
Q ss_pred CCCEEEEecCCCccC---CCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCC
Q 004368 515 SDPLLLYGYGSYEIC---NDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~---~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 591 (758)
+.| ||++||-.... ........+..|+++||.|+++|+||+|.....+ .......+|+.++++++.++.
T Consensus 62 ~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~~------~~~d~~~~~~~~~v~~l~~~~- 133 (350)
T TIGR01836 62 KTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRYL------TLDDYINGYIDKCVDYICRTS- 133 (350)
T ss_pred CCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhcC------CHHHHHHHHHHHHHHHHHHHh-
Confidence 345 77788732211 1112345677899999999999999876432111 000011145778899988764
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccch
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDV 632 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~ 632 (758)
..+++.++|+|+||.+++.++..+|+.++++|+.++.+|.
T Consensus 134 -~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~ 173 (350)
T TIGR01836 134 -KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDF 173 (350)
T ss_pred -CCCcccEEEECHHHHHHHHHHHhCchheeeEEEecccccc
Confidence 3478999999999999999999999999999999888774
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=126.41 Aligned_cols=216 Identities=15% Similarity=0.194 Sum_probs=120.7
Q ss_pred CCEEEEecCCCccCCCCCCChHHH-------HHHHcCcEEEEEecCCCCCCchhHHhccc-ccCCcChHhHHHHHH-HHH
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRL-------SLLDRGFIFAIAQIRGGGELGRQWYENGK-FLKKKNTFTDFIACA-EYL 586 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~-------~l~~~G~~v~~~~~RG~g~~G~~~~~~~~-~~~~~~~~~D~~~~~-~~l 586 (758)
.|.||++||..+....+.-..... .+..++|.|+.+|+||+|..... .... ......+++|+.+.+ +.+
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p--~~~~~~~~~~~~~~~~a~~~~~~l 146 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKP--SDGLRAAFPRYDYDDMVEAQYRLV 146 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCC--CcCCCCCCCcccHHHHHHHHHHHH
Confidence 588999999766543321011111 22367899999999999865321 0000 000124567776543 334
Q ss_pred HHcCCCCCCcEE-EEEeChhHHHHHHHHhhCCCceeEEEEcCCccc------h-hhc-----cC-CC-----CCCCCh--
Q 004368 587 IKNCYCTKEKLC-IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD------V-LTT-----ML-DP-----TIPLTT-- 645 (758)
Q Consensus 587 ~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d------~-~~~-----~~-~~-----~~~~~~-- 645 (758)
.++- +-+++. ++|+|+||++++.++.++|++++++|+.++... . ... .. .. ......
T Consensus 147 ~~~l--gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (360)
T PRK06489 147 TEGL--GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPS 224 (360)
T ss_pred HHhc--CCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHH
Confidence 4432 235664 899999999999999999999999998765320 0 000 00 00 000000
Q ss_pred -h----hhh--------cc--CCCC------------------CHHHH----HHHHhcCcccccCCCCCCeEEEeccCCC
Q 004368 646 -A----EWE--------EW--GDPW------------------KEEFY----FYMKSYSPVDNVKAQNYPHILVTAGLND 688 (758)
Q Consensus 646 -~----~~~--------e~--g~p~------------------~~~~~----~~l~~~sp~~~i~~~~~P~~Li~~G~~D 688 (758)
. .+. .+ ..+. +...+ .....++....+.++++| +||++|++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~P-vLvI~G~~D 303 (360)
T PRK06489 225 LKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAP-VLAINSADD 303 (360)
T ss_pred HHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCC-EEEEecCCC
Confidence 0 000 00 0010 11111 001122233445677898 999999999
Q ss_pred CCCCChHH--HHHHHHHHhcCCCCceEEEEecCCC----CCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 689 PRVMYSEP--AKFVAKLREMKTDDNILLFKCELGA----GHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 689 ~~V~~~~~--~~~~~~L~~~~~~~~~~~~~~~~~~----gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
..+|+..+ +++++.+. ..++++++ ++ ||... ...+.+.+. +.+||.+.
T Consensus 304 ~~~p~~~~~~~~la~~ip----~a~l~~i~---~a~~~~GH~~~-e~P~~~~~~--i~~FL~~~ 357 (360)
T PRK06489 304 ERNPPETGVMEAALKRVK----HGRLVLIP---ASPETRGHGTT-GSAKFWKAY--LAEFLAQV 357 (360)
T ss_pred cccChhhHHHHHHHHhCc----CCeEEEEC---CCCCCCCcccc-cCHHHHHHH--HHHHHHhc
Confidence 99998865 55655543 34577776 54 99875 455555554 56787654
|
|
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=107.49 Aligned_cols=176 Identities=19% Similarity=0.227 Sum_probs=113.6
Q ss_pred CCCCEEEEecCCC--ccCC-CCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcC
Q 004368 514 GSDPLLLYGYGSY--EICN-DPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 590 (758)
Q Consensus 514 ~~~P~vl~~hGg~--~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 590 (758)
...|+.|.+|--+ +.++ ..--...+..|.++||+++-+|+||-|.++.+ ..++..+.+|..+|++||.++.
T Consensus 26 ~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~------fD~GiGE~~Da~aaldW~~~~h 99 (210)
T COG2945 26 PAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGE------FDNGIGELEDAAAALDWLQARH 99 (210)
T ss_pred CCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCc------ccCCcchHHHHHHHHHHHHhhC
Confidence 4567777776432 2222 11112234578889999999999998877654 4566777899999999999885
Q ss_pred CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCccc
Q 004368 591 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVD 670 (758)
Q Consensus 591 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~ 670 (758)
- +..-..+.|+|.|+++++.++.+.|+. ...++..|..+. + .+..
T Consensus 100 p-~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~~--~-----------------------dfs~-------- 144 (210)
T COG2945 100 P-DSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPINA--Y-----------------------DFSF-------- 144 (210)
T ss_pred C-CchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCCc--h-----------------------hhhh--------
Confidence 3 333357899999999999999998763 223333333220 0 0101
Q ss_pred ccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHH
Q 004368 671 NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 743 (758)
Q Consensus 671 ~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 743 (758)
+.....| .|+++|+.|++|.+....++++- .+.+.+..+ +++|++.... ..+... +.+||
T Consensus 145 -l~P~P~~-~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~---~a~HFF~gKl-~~l~~~--i~~~l 204 (210)
T COG2945 145 -LAPCPSP-GLVIQGDADDVVDLVAVLKWQES-----IKITVITIP---GADHFFHGKL-IELRDT--IADFL 204 (210)
T ss_pred -ccCCCCC-ceeEecChhhhhcHHHHHHhhcC-----CCCceEEec---CCCceecccH-HHHHHH--HHHHh
Confidence 1111244 99999999999888777776554 344455555 9999875433 223322 45676
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=118.84 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=76.8
Q ss_pred CCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCC
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 592 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 592 (758)
++..|.||++||..... ..|......|.++||.|+.+|+||+|..... .....++++..+.+..++++-.
T Consensus 15 ~~~~p~vvliHG~~~~~--~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~-------~~~~~~~~~~~~~l~~~i~~l~- 84 (273)
T PLN02211 15 NRQPPHFVLIHGISGGS--WCWYKIRCLMENSGYKVTCIDLKSAGIDQSD-------ADSVTTFDEYNKPLIDFLSSLP- 84 (273)
T ss_pred cCCCCeEEEECCCCCCc--CcHHHHHHHHHhCCCEEEEecccCCCCCCCC-------cccCCCHHHHHHHHHHHHHhcC-
Confidence 35578999999965433 3466666777788999999999998853210 1112455666555544443311
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
..+++.++||||||+++..++.++|++++++|..++.
T Consensus 85 ~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 85 ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 2378999999999999999999999999999988664
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.6e-12 Score=126.83 Aligned_cols=188 Identities=20% Similarity=0.270 Sum_probs=113.6
Q ss_pred EEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEE
Q 004368 519 LLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLC 598 (758)
Q Consensus 519 vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~ 598 (758)
||++||..+.. ..|......| ++||.|+.+|.||.|.....- .....++++..+.+..++++- ..+++.
T Consensus 1 vv~~hG~~~~~--~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~------~~~~~~~~~~~~~l~~~l~~~--~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDPLAEAL-ARGYRVIAFDLPGHGRSDPPP------DYSPYSIEDYAEDLAELLDAL--GIKKVI 69 (228)
T ss_dssp EEEE-STTTTG--GGGHHHHHHH-HTTSEEEEEECTTSTTSSSHS------SGSGGSHHHHHHHHHHHHHHT--TTSSEE
T ss_pred eEEECCCCCCH--HHHHHHHHHH-hCCCEEEEEecCCcccccccc------ccCCcchhhhhhhhhhccccc--cccccc
Confidence 68899965544 4466666666 589999999999988765321 012344555555555544442 227899
Q ss_pred EEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc--------CCCCCC--------CChhhhhccCCCC-CH----
Q 004368 599 IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM--------LDPTIP--------LTTAEWEEWGDPW-KE---- 657 (758)
Q Consensus 599 i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~--------~~~~~~--------~~~~~~~e~g~p~-~~---- 657 (758)
++|+|+||.++..++.++|++++++|+.+|........ ...-.. +....+..+-... ..
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999887532210 000000 0000000000000 00
Q ss_pred ----HHHHHH----HhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCC
Q 004368 658 ----EFYFYM----KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 658 ----~~~~~l----~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
...+.+ ...++...+.+++.| +++++|++|..++.....++.+.+ ...+++.++ ++||..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-vl~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~---~~gH~~ 217 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVP-VLVIHGEDDPIVPPESAEELADKL----PNAELVVIP---GAGHFL 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSE-EEEEEETTSSSSHHHHHHHHHHHS----TTEEEEEET---TSSSTH
T ss_pred ccccccccccccccccccccccccccCCC-eEEeecCCCCCCCHHHHHHHHHHC----CCCEEEEEC---CCCCcc
Confidence 001111 112333455666787 999999999999955555555443 345666665 899974
|
... |
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=122.16 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=74.4
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
+.|.||++||.... ...|.... ..+.++|.|+.+|.||.|..+.. .....+++++.+.+..++++- +.
T Consensus 33 ~~~~iv~lHG~~~~--~~~~~~~~-~~l~~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~~~~~~~~~--~~ 100 (286)
T PRK03204 33 TGPPILLCHGNPTW--SFLYRDII-VALRDRFRCVAPDYLGFGLSERP-------SGFGYQIDEHARVIGEFVDHL--GL 100 (286)
T ss_pred CCCEEEEECCCCcc--HHHHHHHH-HHHhCCcEEEEECCCCCCCCCCC-------CccccCHHHHHHHHHHHHHHh--CC
Confidence 34789999996532 22243333 33456799999999999876431 011234678888887777653 34
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
+++.++|+|+||.++..++..+|++++++|+.++.
T Consensus 101 ~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~ 135 (286)
T PRK03204 101 DRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTW 135 (286)
T ss_pred CCEEEEEECccHHHHHHHHHhChhheeEEEEECcc
Confidence 78999999999999999999999999999876653
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=119.46 Aligned_cols=194 Identities=14% Similarity=0.090 Sum_probs=114.9
Q ss_pred CEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCc
Q 004368 517 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 596 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 596 (758)
|.||++||..+.. ..|......|. ..|.|+.+|.||.|.... ....+++++.. .+.+. ..++
T Consensus 14 ~~ivllHG~~~~~--~~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~---------~~~~~~~~~~~---~l~~~---~~~~ 75 (256)
T PRK10349 14 VHLVLLHGWGLNA--EVWRCIDEELS-SHFTLHLVDLPGFGRSRG---------FGALSLADMAE---AVLQQ---APDK 75 (256)
T ss_pred CeEEEECCCCCCh--hHHHHHHHHHh-cCCEEEEecCCCCCCCCC---------CCCCCHHHHHH---HHHhc---CCCC
Confidence 5699999954333 34555455554 569999999999986532 11133444443 44443 2478
Q ss_pred EEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc----C------------CCCCCCChhhhh---ccCCCC-C
Q 004368 597 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM----L------------DPTIPLTTAEWE---EWGDPW-K 656 (758)
Q Consensus 597 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~----~------------~~~~~~~~~~~~---e~g~p~-~ 656 (758)
+.++|+|+||+++..++.++|++++.+|+..+..-..... . ..........+. .++.+. .
T Consensus 76 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
T PRK10349 76 AIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETAR 155 (256)
T ss_pred eEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchHH
Confidence 9999999999999999999999999998765531110000 0 000000000000 011110 0
Q ss_pred -----------------HH----HHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEE
Q 004368 657 -----------------EE----FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 715 (758)
Q Consensus 657 -----------------~~----~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 715 (758)
.. ....+...+....+.++++| +|+++|++|..+|...+..+.+.+. ..+++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~~~i~----~~~~~~i 230 (256)
T PRK10349 156 QDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMP-FLRLYGYLDGLVPRKVVPMLDKLWP----HSESYIF 230 (256)
T ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCC-eEEEecCCCccCCHHHHHHHHHhCC----CCeEEEe
Confidence 00 01112223333455667898 9999999999998877665555443 3467777
Q ss_pred EecCCCCCCCCCChHHHHHHH
Q 004368 716 KCELGAGHFSKSGRFERLREA 736 (758)
Q Consensus 716 ~~~~~~gH~~~~~~~~~~~~~ 736 (758)
+ ++||.......+.+.+.
T Consensus 231 ~---~~gH~~~~e~p~~f~~~ 248 (256)
T PRK10349 231 A---KAAHAPFISHPAEFCHL 248 (256)
T ss_pred C---CCCCCccccCHHHHHHH
Confidence 6 99998776666655543
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-10 Score=117.96 Aligned_cols=201 Identities=20% Similarity=0.271 Sum_probs=125.2
Q ss_pred HHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHH-cCCCCCCcEEEEEeChhHHHHHHHHhh
Q 004368 537 SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK-NCYCTKEKLCIEGRSAGGLLIGAVLNM 615 (758)
Q Consensus 537 ~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~d~~~i~i~G~S~GG~l~~~~~~~ 615 (758)
.+..|+++||+|+++||-|-|. .|.. + ......+-|.+.|++.+.. .+.....+++++|+|.||..+++++..
T Consensus 18 ~l~~~L~~GyaVv~pDY~Glg~---~y~~-~--~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l 91 (290)
T PF03583_consen 18 FLAAWLARGYAVVAPDYEGLGT---PYLN-G--RSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAEL 91 (290)
T ss_pred HHHHHHHCCCEEEecCCCCCCC---cccC-c--HhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHH
Confidence 3468899999999999998765 2221 1 1112344566666665554 354456899999999999998887754
Q ss_pred ----CCCc---eeEEEEcCCccchhhccCCCCC-CCC----------hhhhh----------------------------
Q 004368 616 ----RPDL---FKAAVAAVPFVDVLTTMLDPTI-PLT----------TAEWE---------------------------- 649 (758)
Q Consensus 616 ----~p~~---f~a~v~~~~~~d~~~~~~~~~~-~~~----------~~~~~---------------------------- 649 (758)
.||+ +.++++..|..|+..++..-+- +.. ...|.
T Consensus 92 ~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~ 171 (290)
T PF03583_consen 92 APSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLAD 171 (290)
T ss_pred hHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHH
Confidence 4676 7899999998886554321000 000 00000
Q ss_pred --------cc--C-----CC-----CCHHHHHHHHhcCc-ccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcC-
Q 004368 650 --------EW--G-----DP-----WKEEFYFYMKSYSP-VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMK- 707 (758)
Q Consensus 650 --------e~--g-----~p-----~~~~~~~~l~~~sp-~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~- 707 (758)
.+ + .+ .++...+.+.+.+. +..-..-+.| |+|.||.+|..||+..+.++++++++.|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~P-v~i~~g~~D~vvP~~~~~~l~~~~c~~G~ 250 (290)
T PF03583_consen 172 IVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVP-VLIYQGTADEVVPPADTDALVAKWCAAGG 250 (290)
T ss_pred HHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCChHHHHHHHHHHHHcCC
Confidence 00 0 00 11222233333322 1001112566 9999999999999999999999999999
Q ss_pred CCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 004368 708 TDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPS 752 (758)
Q Consensus 708 ~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 752 (758)
.++++..++ ..+|... ......+.++||..+|...+.
T Consensus 251 a~V~~~~~~---~~~H~~~-----~~~~~~~a~~Wl~~rf~G~~~ 287 (290)
T PF03583_consen 251 ADVEYVRYP---GGGHLGA-----AFASAPDALAWLDDRFAGKPA 287 (290)
T ss_pred CCEEEEecC---CCChhhh-----hhcCcHHHHHHHHHHHCCCCC
Confidence 677655554 7889532 122234467999999976654
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=124.73 Aligned_cols=109 Identities=17% Similarity=0.074 Sum_probs=67.6
Q ss_pred CCCEEEEecCCCccCCCCCCChHH---HHHHHcCcEEEEEecCCCCCCchhHHhccc---ccCCcChH-hHHHHHHHHHH
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSR---LSLLDRGFIFAIAQIRGGGELGRQWYENGK---FLKKKNTF-TDFIACAEYLI 587 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~---~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~---~~~~~~~~-~D~~~~~~~l~ 587 (758)
..|+||+.||..+.... +.... ..|...+|.|+.+|.||+|.+......... ......++ +|+.+....|.
T Consensus 40 ~~~~vll~~~~~~~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (339)
T PRK07581 40 KDNAILYPTWYSGTHQD--NEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLT 117 (339)
T ss_pred CCCEEEEeCCCCCCccc--chhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHH
Confidence 34777777765443322 22111 245567999999999999976432110000 00001112 44444344455
Q ss_pred H-cCCCCCCcE-EEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 588 K-NCYCTKEKL-CIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 588 ~-~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
+ .+. +++ .++|+|+||+++..++.++|++++++|+.++
T Consensus 118 ~~lgi---~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~ 157 (339)
T PRK07581 118 EKFGI---ERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAG 157 (339)
T ss_pred HHhCC---CceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeec
Confidence 4 343 684 7899999999999999999999999887754
|
|
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.8e-11 Score=110.30 Aligned_cols=211 Identities=18% Similarity=0.229 Sum_probs=133.2
Q ss_pred eEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCC--hHHHHHH-HcCcEEEEEec--CCCCC----------Cch
Q 004368 497 TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN--SSRLSLL-DRGFIFAIAQI--RGGGE----------LGR 561 (758)
Q Consensus 497 ~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~--~~~~~l~-~~G~~v~~~~~--RG~g~----------~G~ 561 (758)
..+..-++.|++. ..+++.|++.+.-|-.. ....|. .-+|..+ .+|.+|+.||- ||-.- .|.
T Consensus 26 c~Mtf~vylPp~a-~~~k~~P~lf~LSGLTC--T~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GA 102 (283)
T KOG3101|consen 26 CSMTFGVYLPPDA-PRGKRCPVLFYLSGLTC--THENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGA 102 (283)
T ss_pred cceEEEEecCCCc-ccCCcCceEEEecCCcc--cchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCc
Confidence 4455566778887 66777999999988433 333332 2234444 46999999984 55321 122
Q ss_pred hHHhcccccCCcChHhHHHHHHHHHHH-----cCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc
Q 004368 562 QWYENGKFLKKKNTFTDFIACAEYLIK-----NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM 636 (758)
Q Consensus 562 ~~~~~~~~~~~~~~~~D~~~~~~~l~~-----~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~ 636 (758)
.|+-....+.-.+.+.-...+++.|.+ .-.+|+.+++|.||||||+-++....++|.+|+.+.+.+|+.+..+.
T Consensus 103 GFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~c- 181 (283)
T KOG3101|consen 103 GFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINC- 181 (283)
T ss_pred eeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccC-
Confidence 222221111111223333334444432 23579999999999999999998899999999999999999987643
Q ss_pred CCCCCCCChhhhhcc-CCCCCHHHHHHHHhcCcccccCCC---CCCeEEEeccCCCCCCC-ChHHHHHHHHHHhcCCCCc
Q 004368 637 LDPTIPLTTAEWEEW-GDPWKEEFYFYMKSYSPVDNVKAQ---NYPHILVTAGLNDPRVM-YSEPAKFVAKLREMKTDDN 711 (758)
Q Consensus 637 ~~~~~~~~~~~~~e~-g~p~~~~~~~~l~~~sp~~~i~~~---~~P~~Li~~G~~D~~V~-~~~~~~~~~~L~~~~~~~~ 711 (758)
||....+.-| |+ ++..| .+|++-+-|++. .. -+||-.|.+|...+ ---++.+.++.++. ..-
T Consensus 182 -----pWGqKAf~gYLG~--~ka~W---~~yDat~lik~y~~~~~-~ilIdqG~~D~Fl~~qLlPe~l~~a~~~~--~~~ 248 (283)
T KOG3101|consen 182 -----PWGQKAFTGYLGD--NKAQW---EAYDATHLIKNYRGVGD-DILIDQGAADNFLAEQLLPENLLEACKAT--WQA 248 (283)
T ss_pred -----cchHHHhhcccCC--ChHHH---hhcchHHHHHhcCCCCc-cEEEecCccchhhhhhcChHHHHHHhhcc--ccc
Confidence 6665555444 44 44443 567776555554 22 38999999998766 22244555554433 223
Q ss_pred eEEEEecCCCCCC
Q 004368 712 ILLFKCELGAGHF 724 (758)
Q Consensus 712 ~~~~~~~~~~gH~ 724 (758)
+++++..++-.|.
T Consensus 249 ~v~~r~~~gyDHS 261 (283)
T KOG3101|consen 249 PVVFRLQEGYDHS 261 (283)
T ss_pred cEEEEeecCCCcc
Confidence 5677777777785
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-10 Score=123.73 Aligned_cols=224 Identities=16% Similarity=0.148 Sum_probs=129.7
Q ss_pred CCEEEEecCCCccCCCCC-----------CChHH---HHHHHcCcEEEEEecCCC-C-CCchhHHhc--ccc---cCCcC
Q 004368 516 DPLLLYGYGSYEICNDPA-----------FNSSR---LSLLDRGFIFAIAQIRGG-G-ELGRQWYEN--GKF---LKKKN 574 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~-----------~~~~~---~~l~~~G~~v~~~~~RG~-g-~~G~~~~~~--~~~---~~~~~ 574 (758)
.|.||++||..+...... |...+ ..+...+|.|+.+|++|+ + ..+...... +.. .....
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~ 127 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVI 127 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcC
Confidence 689999999665543211 22222 144467999999999983 2 223211100 000 01135
Q ss_pred hHhHHHHHHHHHHHcCCCCCCc-EEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchh----------hccC--CCC-
Q 004368 575 TFTDFIACAEYLIKNCYCTKEK-LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVL----------TTML--DPT- 640 (758)
Q Consensus 575 ~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~----------~~~~--~~~- 640 (758)
+++|+.+.+..+++.- .-++ +.++|+|+||.++..++.++|++++++|+.++..... .... +..
T Consensus 128 ~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 205 (379)
T PRK00175 128 TIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSAQNIAFNEVARQAILADPDW 205 (379)
T ss_pred CHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCHHHHHHHHHHHHHHHhCCCC
Confidence 6788887777666552 2356 5899999999999999999999999998877543210 0000 000
Q ss_pred ----------CCC---------------Chhhh-hccCC------------------------------CCCHHHHH---
Q 004368 641 ----------IPL---------------TTAEW-EEWGD------------------------------PWKEEFYF--- 661 (758)
Q Consensus 641 ----------~~~---------------~~~~~-~e~g~------------------------------p~~~~~~~--- 661 (758)
.+. ....+ ..++. ..+++.+.
T Consensus 206 ~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~ 285 (379)
T PRK00175 206 HGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLRYQGDKFVERFDANSYLYLT 285 (379)
T ss_pred CCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHHHHHHHHhhccCchHHHHHH
Confidence 000 00000 00100 00111110
Q ss_pred -HHHhcC--------cccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHH
Q 004368 662 -YMKSYS--------PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFER 732 (758)
Q Consensus 662 -~l~~~s--------p~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 732 (758)
.+...+ -...++++++| +|+++|++|..+|+..++++++.+...+..++++.++ +++||.........
T Consensus 286 ~~~~~~d~~~~~~~d~~~~l~~I~~P-tLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~--~~~GH~~~le~p~~ 362 (379)
T PRK00175 286 RALDYFDPARGRGGDLAAALARIKAR-FLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEID--SPYGHDAFLLDDPR 362 (379)
T ss_pred HHHHhccccCCCCCCHHHHHhcCCCC-EEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeC--CCCCchhHhcCHHH
Confidence 111111 01234567888 9999999999999999999999998776555555553 37999876555555
Q ss_pred HHHHHHHHHHHHHh
Q 004368 733 LREAAFTYTFLMRA 746 (758)
Q Consensus 733 ~~~~~~~~~fl~~~ 746 (758)
+.+. +.+||.+.
T Consensus 363 ~~~~--L~~FL~~~ 374 (379)
T PRK00175 363 YGRL--VRAFLERA 374 (379)
T ss_pred HHHH--HHHHHHhh
Confidence 4443 56787653
|
|
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-10 Score=106.19 Aligned_cols=198 Identities=20% Similarity=0.181 Sum_probs=133.6
Q ss_pred CCCCEEEEecCCCccCCCCCCChH-HHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSS-RLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 592 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~-~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 592 (758)
...|++|++||||+.......... ....+.+||.|+.++|--+.+ ...-..++.|+...++|+.+.- -
T Consensus 65 ~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q----------~htL~qt~~~~~~gv~filk~~-~ 133 (270)
T KOG4627|consen 65 NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ----------VHTLEQTMTQFTHGVNFILKYT-E 133 (270)
T ss_pred CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcc----------cccHHHHHHHHHHHHHHHHHhc-c
Confidence 357999999999998766544433 357788999999998753332 1111356789999999987753 3
Q ss_pred CCCcEEEEEeChhHHHHHHHHhh-CCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCC--CHHHHHHHHhcCc-
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNM-RPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPW--KEEFYFYMKSYSP- 668 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~--~~~~~~~l~~~sp- 668 (758)
+.+.|.+.|||+|++|++.++++ +..+..++++.+|++|+..... .|+|+.- .. +..+..|+
T Consensus 134 n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~-----------te~g~dlgLt~---~~ae~~Scd 199 (270)
T KOG4627|consen 134 NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSN-----------TESGNDLGLTE---RNAESVSCD 199 (270)
T ss_pred cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhC-----------CccccccCccc---chhhhcCcc
Confidence 56789999999999998876664 4558899999999999654321 1233220 11 11233444
Q ss_pred ccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 669 VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 669 ~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
+...+.++.| +||+.+.+|.---++|.+.|++.++++. +.+++ +.+|.--. .+......+++.|+.+.
T Consensus 200 l~~~~~v~~~-ilVv~~~~espklieQnrdf~~q~~~a~----~~~f~---n~~hy~I~--~~~~~~~s~~~~~~~~~ 267 (270)
T KOG4627|consen 200 LWEYTDVTVW-ILVVAAEHESPKLIEQNRDFADQLRKAS----FTLFK---NYDHYDII--EETAIDDSDVSRFLRNI 267 (270)
T ss_pred HHHhcCceee-eeEeeecccCcHHHHhhhhHHHHhhhcc----eeecC---CcchhhHH--HHhccccchHHHHHHHH
Confidence 2334455777 9999999999888999999999998743 44565 88895311 11222334566676654
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-09 Score=118.06 Aligned_cols=96 Identities=13% Similarity=0.071 Sum_probs=65.8
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChH----hHHHHHHHHHHHcCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF----TDFIACAEYLIKNCY 591 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~----~D~~~~~~~l~~~~~ 591 (758)
.|.||++||..+.. ..|......| .++|.|+.+|+||.|.+..... ..+. +|+.+.++.+.
T Consensus 86 g~~vvliHG~~~~~--~~w~~~~~~l-~~~~~v~~~D~~G~G~S~~~~~--------~~~~~~~a~~l~~~i~~~~---- 150 (354)
T PLN02578 86 GLPIVLIHGFGASA--FHWRYNIPEL-AKKYKVYALDLLGFGWSDKALI--------EYDAMVWRDQVADFVKEVV---- 150 (354)
T ss_pred CCeEEEECCCCCCH--HHHHHHHHHH-hcCCEEEEECCCCCCCCCCccc--------ccCHHHHHHHHHHHHHHhc----
Confidence 35688999954432 2233333444 4679999999999987654311 1122 23443343332
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
.+++.++|+|+||+++..++.++|++++++|+.++
T Consensus 151 --~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~ 185 (354)
T PLN02578 151 --KEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNS 185 (354)
T ss_pred --cCCeEEEEECHHHHHHHHHHHhChHhcceEEEECC
Confidence 36899999999999999999999999999987654
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=112.02 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=70.5
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++||..+... .|......| .+|.|+.+|+||.|..... ...+++++.+-+..++++- ..+
T Consensus 2 ~p~vvllHG~~~~~~--~w~~~~~~l--~~~~vi~~D~~G~G~S~~~---------~~~~~~~~~~~l~~~l~~~--~~~ 66 (242)
T PRK11126 2 LPWLVFLHGLLGSGQ--DWQPVGEAL--PDYPRLYIDLPGHGGSAAI---------SVDGFADVSRLLSQTLQSY--NIL 66 (242)
T ss_pred CCEEEEECCCCCChH--HHHHHHHHc--CCCCEEEecCCCCCCCCCc---------cccCHHHHHHHHHHHHHHc--CCC
Confidence 378999999755443 455555555 4799999999999876431 0124555555554444432 347
Q ss_pred cEEEEEeChhHHHHHHHHhhCCC-ceeEEEEcCCc
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAVPF 629 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~~~ 629 (758)
++.++|+|+||.+++.++.++|+ +++++++.++.
T Consensus 67 ~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~ 101 (242)
T PRK11126 67 PYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGN 101 (242)
T ss_pred CeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCC
Confidence 99999999999999999999865 48888876644
|
|
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-09 Score=106.08 Aligned_cols=100 Identities=20% Similarity=0.221 Sum_probs=73.3
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChH----hHHHHHHHHHHHc
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF----TDFIACAEYLIKN 589 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~----~D~~~~~~~l~~~ 589 (758)
+..|+|+++||-+....+ |......|+++||.|+++|.||-|..-..- ....-++ .|+++.++.|
T Consensus 42 ~~gP~illlHGfPe~wys--wr~q~~~la~~~~rviA~DlrGyG~Sd~P~------~~~~Yt~~~l~~di~~lld~L--- 110 (322)
T KOG4178|consen 42 GDGPIVLLLHGFPESWYS--WRHQIPGLASRGYRVIAPDLRGYGFSDAPP------HISEYTIDELVGDIVALLDHL--- 110 (322)
T ss_pred CCCCEEEEEccCCccchh--hhhhhhhhhhcceEEEecCCCCCCCCCCCC------CcceeeHHHHHHHHHHHHHHh---
Confidence 467999999997665443 444567899999999999999887643211 1111223 3444444444
Q ss_pred CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcC
Q 004368 590 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV 627 (758)
Q Consensus 590 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 627 (758)
| -+|+.++||++|+.++..++..+|++..+.|+.+
T Consensus 111 g---~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~n 145 (322)
T KOG4178|consen 111 G---LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLN 145 (322)
T ss_pred c---cceeEEEeccchhHHHHHHHHhChhhcceEEEec
Confidence 3 3899999999999999999999999999888764
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=118.29 Aligned_cols=186 Identities=16% Similarity=0.089 Sum_probs=106.9
Q ss_pred HHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCc-EEEEEeChhHHHHHHHHhhCCC
Q 004368 540 SLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK-LCIEGRSAGGLLIGAVLNMRPD 618 (758)
Q Consensus 540 ~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~ 618 (758)
.|...+|.|+.+|+||+|+... ....+.|+.+.+..+++.- +-++ +.++|+|+||+++..++.++|+
T Consensus 94 ~L~~~~~~Vi~~Dl~G~g~s~~----------~~~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA~~~A~~~P~ 161 (343)
T PRK08775 94 ALDPARFRLLAFDFIGADGSLD----------VPIDTADQADAIALLLDAL--GIARLHAFVGYSYGALVGLQFASRHPA 161 (343)
T ss_pred ccCccccEEEEEeCCCCCCCCC----------CCCCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHHHHHHHHChH
Confidence 3545689999999999875421 0122345544444444432 2245 5799999999999999999999
Q ss_pred ceeEEEEcCCccchh-------h---cc--CCCCC--C--------------C-Chhhh-hccCCCCC-------HHHH-
Q 004368 619 LFKAAVAAVPFVDVL-------T---TM--LDPTI--P--------------L-TTAEW-EEWGDPWK-------EEFY- 660 (758)
Q Consensus 619 ~f~a~v~~~~~~d~~-------~---~~--~~~~~--~--------------~-~~~~~-~e~g~p~~-------~~~~- 660 (758)
+++++|+.++..... . .. ..... . + ....+ ..+..... ....
T Consensus 162 ~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T PRK08775 162 RVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAED 241 (343)
T ss_pred hhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHH
Confidence 999999887643210 0 00 00000 0 0 00000 01111100 0000
Q ss_pred -------HHHHhcCc-------------ccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCC
Q 004368 661 -------FYMKSYSP-------------VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 720 (758)
Q Consensus 661 -------~~l~~~sp-------------~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 720 (758)
......++ ...+.++++| +|+++|++|..+|+.+++++++++.. ..++++++ .+
T Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~P-tLvi~G~~D~~~p~~~~~~~~~~i~p---~a~l~~i~--~~ 315 (343)
T PRK08775 242 YLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVP-TVVVAVEGDRLVPLADLVELAEGLGP---RGSLRVLR--SP 315 (343)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCC-eEEEEeCCCEeeCHHHHHHHHHHcCC---CCeEEEEe--CC
Confidence 00011111 1124567888 99999999999999988888777642 24566675 13
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 721 AGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 721 ~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
+||...-...+.+.+. +.+||.+
T Consensus 316 aGH~~~lE~Pe~~~~~--l~~FL~~ 338 (343)
T PRK08775 316 YGHDAFLKETDRIDAI--LTTALRS 338 (343)
T ss_pred ccHHHHhcCHHHHHHH--HHHHHHh
Confidence 8998766666655554 4678754
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-11 Score=123.86 Aligned_cols=204 Identities=19% Similarity=0.264 Sum_probs=122.7
Q ss_pred CeEEEEEEEeeccccccCCCCCEEEEecCC-CccCCCCCCChHHHHHHHcC----cEEEEEecCCCCCCchhHHhc----
Q 004368 496 GTQIPICIVYRKNLVKLDGSDPLLLYGYGS-YEICNDPAFNSSRLSLLDRG----FIFAIAQIRGGGELGRQWYEN---- 566 (758)
Q Consensus 496 G~~i~~~l~~p~~~~~~~~~~P~vl~~hGg-~~~~~~~~~~~~~~~l~~~G----~~v~~~~~RG~g~~G~~~~~~---- 566 (758)
|..+.++|+.|+++ ...+++|+|++.||. ..... .........+++.| .++++++.-+.......|+..
T Consensus 5 g~~~~~~VylP~~y-~~~~~~PvlylldG~~~~~~~-~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~ 82 (251)
T PF00756_consen 5 GRDRRVWVYLPPGY-DPSKPYPVLYLLDGQSGWFRN-GNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSS 82 (251)
T ss_dssp TEEEEEEEEECTTG-GTTTTEEEEEEESHTTHHHHH-HHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTT
T ss_pred CCeEEEEEEECCCC-CCCCCCEEEEEccCCcccccc-chHHHHHHHHHHhCCCCceEEEEEecccccccccccccccccc
Confidence 66788999999997 778899999999994 11100 00111223345554 455666654444333344421
Q ss_pred --ccccCCcChHhHHHH--HHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCC
Q 004368 567 --GKFLKKKNTFTDFIA--CAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 642 (758)
Q Consensus 567 --~~~~~~~~~~~D~~~--~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~ 642 (758)
.....+...+.+++. .+.++.++.-+++++.+|+|+|+||+.++.++.++|++|.++++.+|.++....+
T Consensus 83 ~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~~~~------ 156 (251)
T PF00756_consen 83 RRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPSPSL------ 156 (251)
T ss_dssp CBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETTHCH------
T ss_pred cccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccccccc------
Confidence 111222234455543 6777777777777779999999999999999999999999999999997754211
Q ss_pred CChhhhhccCCCCCHHHHHHHHhcCccccc-----CCCCCCeEEEeccCCCCCCCC----------hHHHHHHHHHHhcC
Q 004368 643 LTTAEWEEWGDPWKEEFYFYMKSYSPVDNV-----KAQNYPHILVTAGLNDPRVMY----------SEPAKFVAKLREMK 707 (758)
Q Consensus 643 ~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i-----~~~~~P~~Li~~G~~D~~V~~----------~~~~~~~~~L~~~~ 707 (758)
|+....+ . +...+|+.++ +.... .+++.+|..|..... ....++.+.|+..+
T Consensus 157 --------w~~~~~~-~---~~~~~~~~~~~~~~~~~~~~-~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 223 (251)
T PF00756_consen 157 --------WGPSDDE-A---WKENDPFDLIKALSQKKKPL-RIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKAKG 223 (251)
T ss_dssp --------HHHSTCG-H---HGGCHHHHHHHHHHHTTSEE-EEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred --------cCcCCcH-H---hhhccHHHHhhhhhcccCCC-eEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHHcC
Confidence 1111110 0 0112222211 11123 489999999985432 23334444555666
Q ss_pred CCCceEEEEecCCCCCC
Q 004368 708 TDDNILLFKCELGAGHF 724 (758)
Q Consensus 708 ~~~~~~~~~~~~~~gH~ 724 (758)
.+.....++ ++|.
T Consensus 224 ~~~~~~~~~----G~H~ 236 (251)
T PF00756_consen 224 IPHTYHVFP----GGHD 236 (251)
T ss_dssp CTTESEEEH----SESS
T ss_pred CCceEEEec----Cccc
Confidence 777666664 6783
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-10 Score=111.25 Aligned_cols=167 Identities=22% Similarity=0.171 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh---ccCCC--CCCCChhhh---
Q 004368 577 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT---TMLDP--TIPLTTAEW--- 648 (758)
Q Consensus 577 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~---~~~~~--~~~~~~~~~--- 648 (758)
+=|..|++||.+++.+++++|+|+|.|.||-+++.++...| .++|+|+.+|-.-+.. ..... .+|......
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~ 82 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKF 82 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhc
Confidence 45788999999999999999999999999999999999998 7899999888432211 11111 111111000
Q ss_pred --hccCCCCCHHHHHHHH---hcCcccccCCCCCCeEEEeccCCCCCCCChHHH-HHHHHHHhcCCC--CceEEEEecCC
Q 004368 649 --EEWGDPWKEEFYFYMK---SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPA-KFVAKLREMKTD--DNILLFKCELG 720 (758)
Q Consensus 649 --~e~g~p~~~~~~~~l~---~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~-~~~~~L~~~~~~--~~~~~~~~~~~ 720 (758)
..-+.......+.... .....-.++++++| +|+++|++|...|-.... .+.++|++++.+ .+.+.|+ +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~p-iLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~---~ 158 (213)
T PF08840_consen 83 SWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGP-ILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYP---G 158 (213)
T ss_dssp EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SE-EEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEET---T
T ss_pred eecCCcceehhhhhhcccccccccccccHHHcCCC-EEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcC---C
Confidence 0001110000000000 00111124455787 999999999988754444 566778888866 4555565 9
Q ss_pred CCCCCCCCh--------------------------HHHHHHHHHHHHHHHHhcC
Q 004368 721 AGHFSKSGR--------------------------FERLREAAFTYTFLMRALS 748 (758)
Q Consensus 721 ~gH~~~~~~--------------------------~~~~~~~~~~~~fl~~~l~ 748 (758)
+||....+. ....+.+..+++||.++|+
T Consensus 159 aGH~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 159 AGHLIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp B-S---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCceecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999752110 0233445567899999987
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-08 Score=110.39 Aligned_cols=201 Identities=15% Similarity=0.105 Sum_probs=137.3
Q ss_pred eeEEECCCCCEEEEEEeC-----------------------------CCC--eEEEEEEEECCCCceeecccc-------
Q 004368 194 GCFQVSPDNKLVAYAEDT-----------------------------KGD--EIYTVYVIDIETGTPVGKPLV------- 235 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~-----------------------------~G~--e~~~l~v~dl~~g~~~~~~~~------- 235 (758)
..+.|||||++|||..-. .|+ ....|+|+|+++++.......
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~ 183 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQD 183 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCc
Confidence 467999999999998521 122 246899999999987432211
Q ss_pred CcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCcee---eEEEEc-CCCcEEEEEecCCcceE
Q 004368 236 GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYS---LGLQAS-ESKKFLFIASESKITRF 310 (758)
Q Consensus 236 ~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~---~~~~~S-~Dg~~l~~~s~~~~~~~ 310 (758)
.....+.|++|+ +|++...++......+...+..++. ..++.++....+. ..+.+. +++..+++.+...+..+
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~--~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE--TRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT--CEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc--eeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 125668999999 5998888877666677888887763 4455555544432 133444 77777777777777899
Q ss_pred EEEEeCCCCCceEEeecccccee--eEEeecCCEEEEEEcCCCCCCcEEEEEeCC-CCCcceeeecCCCCceeeeEEEeC
Q 004368 311 VFYLDVSKPEELRVLTPRVVGVD--TAASHRGNHFFITRRSDELFNSELLACPVD-NTSETTVLIPHRESVKLQDIQLFI 387 (758)
Q Consensus 311 l~~~d~~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 387 (758)
||+++.+++. .+.|+.+.-.+. ..++++++.|||.++.......+||+++++ + +..+.|+.......-..+++++
T Consensus 262 ly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 262 LYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-GEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp EEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET-TEEEESSTTSSTTEEEEE-TTS
T ss_pred EEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC-CCeEeccCCCCCceEEEECCCC
Confidence 9999999886 788887765552 348999999999999864567899999998 4 3444466554443244667777
Q ss_pred CEEEEEEEeCC
Q 004368 388 DHLAVYEREGG 398 (758)
Q Consensus 388 ~~l~~~~~~~g 398 (758)
++++..++.-+
T Consensus 340 ~y~v~~~s~~~ 350 (353)
T PF00930_consen 340 KYYVDTYSGPD 350 (353)
T ss_dssp SEEEEEEESSS
T ss_pred CEEEEEEcCCC
Confidence 88887776543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.8e-09 Score=112.11 Aligned_cols=202 Identities=15% Similarity=0.107 Sum_probs=120.8
Q ss_pred EEEEeeCC-CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcC----cEEEEEecCCCCCCch
Q 004368 487 ERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRG----FIFAIAQIRGGGELGR 561 (758)
Q Consensus 487 ~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G----~~v~~~~~RG~g~~G~ 561 (758)
+.+.+.|. -|.+..++++.|++. . .+++|+|++.||........ .......|++.| .+++++|.-.+.....
T Consensus 181 ~~~~~~S~~Lg~~r~v~VY~P~~y-~-~~~~PvlyllDG~~w~~~~~-~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~ 257 (411)
T PRK10439 181 KEIIWKSERLGNSRRVWIYTTGDA-A-PEERPLAILLDGQFWAESMP-VWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQ 257 (411)
T ss_pred EEEEEEccccCCceEEEEEECCCC-C-CCCCCEEEEEECHHhhhcCC-HHHHHHHHHHcCCCCceEEEEECCCCcccccc
Confidence 44555543 366788888889887 4 46799999999976543222 122334667777 3467777532111111
Q ss_pred hHHhcccccCCcChHhHHH--HHHHHHHHcC--CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccC
Q 004368 562 QWYENGKFLKKKNTFTDFI--ACAEYLIKNC--YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 637 (758)
Q Consensus 562 ~~~~~~~~~~~~~~~~D~~--~~~~~l~~~~--~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~ 637 (758)
+ ......+.+++ ..+-++.++. ..|+++.+|+|.|+||+.++.++.++|++|.++++.+|-+-+...
T Consensus 258 e-------l~~~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~~-- 328 (411)
T PRK10439 258 E-------LPCNADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPHR-- 328 (411)
T ss_pred c-------CCchHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCCc--
Confidence 0 01111222222 1334444442 358899999999999999999999999999999999985311110
Q ss_pred CCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEe
Q 004368 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKC 717 (758)
Q Consensus 638 ~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 717 (758)
.+. ......+.+.+. ...+... .++|.+|..|... +...+++++.|+++|.++....+
T Consensus 329 -------------~~~-~~~~l~~~l~~~----~~~~~~l-r~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~-- 386 (411)
T PRK10439 329 -------------GGQ-QEGVLLEQLKAG----EVSARGL-RIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQV-- 386 (411)
T ss_pred -------------cCC-chhHHHHHHHhc----ccCCCCc-eEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEEC--
Confidence 000 011111222221 0111122 4899999998643 56789999999999987655444
Q ss_pred cCCCCCC
Q 004368 718 ELGAGHF 724 (758)
Q Consensus 718 ~~~~gH~ 724 (758)
.+||.
T Consensus 387 --~GGHd 391 (411)
T PRK10439 387 --DGGHD 391 (411)
T ss_pred --CCCcC
Confidence 35894
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.6e-09 Score=98.46 Aligned_cols=197 Identities=16% Similarity=0.198 Sum_probs=125.6
Q ss_pred CCCCCEEEEecCCCccCCCCCCCh-HHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCC
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNS-SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 591 (758)
.+..-++|++||. .+.-...+.. .+.++...|+-++-+|++|.|++...|+. .+.....+|+..+++++....
T Consensus 30 tgs~e~vvlcHGf-rS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~----Gn~~~eadDL~sV~q~~s~~n- 103 (269)
T KOG4667|consen 30 TGSTEIVVLCHGF-RSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYY----GNYNTEADDLHSVIQYFSNSN- 103 (269)
T ss_pred cCCceEEEEeecc-ccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCcccc----CcccchHHHHHHHHHHhccCc-
Confidence 4677899999993 3322222222 23466777999999999999998777764 233345599999999997632
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhh-hc------------cCCCCCHH
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW-EE------------WGDPWKEE 658 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~-~e------------~g~p~~~~ 658 (758)
.---+|.|||-||.++...+..+++ .+-+|..+|=.|..+.... .+.-...+| .+ |+.-..++
T Consensus 104 --r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~e-Rlg~~~l~~ike~Gfid~~~rkG~y~~rvt~e 179 (269)
T KOG4667|consen 104 --RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINE-RLGEDYLERIKEQGFIDVGPRKGKYGYRVTEE 179 (269)
T ss_pred --eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhh-hhcccHHHHHHhCCceecCcccCCcCceecHH
Confidence 2334799999999999999998877 5677777776665443211 111000111 11 11112222
Q ss_pred HHH-HHH-hcCcc-cccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCC
Q 004368 659 FYF-YMK-SYSPV-DNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG 728 (758)
Q Consensus 659 ~~~-~l~-~~sp~-~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~ 728 (758)
... .|. ..++. ..|. ..|| ||-+||..|..||.+.|.+|+..+.. .++.+.+ ++.|.+...
T Consensus 180 SlmdrLntd~h~aclkId-~~C~-VLTvhGs~D~IVPve~AkefAk~i~n----H~L~iIE---gADHnyt~~ 243 (269)
T KOG4667|consen 180 SLMDRLNTDIHEACLKID-KQCR-VLTVHGSEDEIVPVEDAKEFAKIIPN----HKLEIIE---GADHNYTGH 243 (269)
T ss_pred HHHHHHhchhhhhhcCcC-ccCc-eEEEeccCCceeechhHHHHHHhccC----CceEEec---CCCcCccch
Confidence 111 111 01111 1132 2787 99999999999999999999887764 3455565 999987544
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.8e-09 Score=113.30 Aligned_cols=225 Identities=17% Similarity=0.125 Sum_probs=128.4
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCC
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 572 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~ 572 (758)
+.+|.++... ..+ ++..|.||++||..... ..|...+..| ..+|.|+.+|+||+|........ ...
T Consensus 111 ~~~~~~~~y~---~~G----~~~~~~ivllHG~~~~~--~~w~~~~~~L-~~~~~Via~DlpG~G~S~~p~~~----~~~ 176 (383)
T PLN03084 111 SSDLFRWFCV---ESG----SNNNPPVLLIHGFPSQA--YSYRKVLPVL-SKNYHAIAFDWLGFGFSDKPQPG----YGF 176 (383)
T ss_pred cCCceEEEEE---ecC----CCCCCeEEEECCCCCCH--HHHHHHHHHH-hcCCEEEEECCCCCCCCCCCccc----ccc
Confidence 4677766432 111 12358899999965433 2355544455 46899999999999865432110 011
Q ss_pred cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchh-----hc---c----CC--
Q 004368 573 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVL-----TT---M----LD-- 638 (758)
Q Consensus 573 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~-----~~---~----~~-- 638 (758)
..+++++...+..++++- ..+++.++|+|+||.++..++.++|++++++|+.+|..... .. + ..
T Consensus 177 ~ys~~~~a~~l~~~i~~l--~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~ 254 (383)
T PLN03084 177 NYTLDEYVSSLESLIDEL--KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEI 254 (383)
T ss_pred cCCHHHHHHHHHHHHHHh--CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhh
Confidence 235666666665555542 23689999999999999999999999999999888753210 00 0 00
Q ss_pred -CCCCC---------------ChhhhhccCCC----C-CHHH----HHHHHhcC-c----ccc---cCCCCCCeEEEecc
Q 004368 639 -PTIPL---------------TTAEWEEWGDP----W-KEEF----YFYMKSYS-P----VDN---VKAQNYPHILVTAG 685 (758)
Q Consensus 639 -~~~~~---------------~~~~~~e~g~p----~-~~~~----~~~l~~~s-p----~~~---i~~~~~P~~Li~~G 685 (758)
...+. .......|-.+ . .... +..+.... . +.. ..+++.| +||++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vP-vLiI~G 333 (383)
T PLN03084 255 FSQDPLRASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTP-ITVCWG 333 (383)
T ss_pred hhcchHHHHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCC-EEEEee
Confidence 00000 00000011111 0 0001 11111100 0 000 1245788 999999
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 686 ~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
+.|..+++..++++++.. +.++++++ ++||.......+.+... +.+||.
T Consensus 334 ~~D~~v~~~~~~~~a~~~-----~a~l~vIp---~aGH~~~~E~Pe~v~~~--I~~Fl~ 382 (383)
T PLN03084 334 LRDRWLNYDGVEDFCKSS-----QHKLIELP---MAGHHVQEDCGEELGGI--ISGILS 382 (383)
T ss_pred CCCCCcCHHHHHHHHHhc-----CCeEEEEC---CCCCCcchhCHHHHHHH--HHHHhh
Confidence 999999987776666542 34566776 89998776665555443 455653
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-09 Score=101.82 Aligned_cols=162 Identities=18% Similarity=0.227 Sum_probs=111.6
Q ss_pred HHHHHcCcEEEEEecCCCCCC--c------hhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHH
Q 004368 539 LSLLDRGFIFAIAQIRGGGEL--G------RQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIG 610 (758)
Q Consensus 539 ~~l~~~G~~v~~~~~RG~g~~--G------~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~ 610 (758)
-.++..||.|++||+=.|.-+ + ..|.+ +..-+..+.|+.+.++||..+| ++.+||++|+.+||-++.
T Consensus 61 dk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~---~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv 135 (242)
T KOG3043|consen 61 DKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMK---GHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVV 135 (242)
T ss_pred HHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHh---cCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEEE
Confidence 456677999999998443111 1 12332 2333456799999999999776 469999999999999888
Q ss_pred HHHhhCCCceeEEEEcCCc-cchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCC
Q 004368 611 AVLNMRPDLFKAAVAAVPF-VDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDP 689 (758)
Q Consensus 611 ~~~~~~p~~f~a~v~~~~~-~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~ 689 (758)
......| +|.|+++..|. +| .+ .+..+++| +|++.|+.|.
T Consensus 136 ~~~~~~~-~f~a~v~~hps~~d-------------------------~~------------D~~~vk~P-ilfl~ae~D~ 176 (242)
T KOG3043|consen 136 TLSAKDP-EFDAGVSFHPSFVD-------------------------SA------------DIANVKAP-ILFLFAELDE 176 (242)
T ss_pred Eeeccch-hheeeeEecCCcCC-------------------------hh------------HHhcCCCC-EEEEeecccc
Confidence 8888766 78888877662 11 11 12334577 9999999999
Q ss_pred CCCChHHHHHHHHHHhcCCC-CceEEEEecCCCCCCCCC---------ChHHHHHHHHHHHHHHHHhc
Q 004368 690 RVMYSEPAKFVAKLREMKTD-DNILLFKCELGAGHFSKS---------GRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 690 ~V~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~~gH~~~~---------~~~~~~~~~~~~~~fl~~~l 747 (758)
.+|+.....+-++|++...- .++.+| ++.+|++.. ++...-+...+...||.+++
T Consensus 177 ~~p~~~v~~~ee~lk~~~~~~~~v~~f---~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 177 DVPPKDVKAWEEKLKENPAVGSQVKTF---SGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred cCCHHHHHHHHHHHhcCcccceeEEEc---CCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 99999988888888775432 234455 499998742 11112222455678888775
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=123.64 Aligned_cols=128 Identities=18% Similarity=0.120 Sum_probs=90.7
Q ss_pred EEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHc-C-cEEEEEecC-CCCCCchhHHhcccccCCcCh
Q 004368 499 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-G-FIFAIAQIR-GGGELGRQWYENGKFLKKKNT 575 (758)
Q Consensus 499 i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G-~~v~~~~~R-G~g~~G~~~~~~~~~~~~~~~ 575 (758)
+.+.|+.|... ...++.|+||++|||.......... ....|+.+ + ++|+.+||| |..++...... ...+...
T Consensus 79 l~l~i~~p~~~-~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~---~~~~n~g 153 (493)
T cd00312 79 LYLNVYTPKNT-KPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDI---ELPGNYG 153 (493)
T ss_pred CeEEEEeCCCC-CCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCC---CCCcchh
Confidence 45556667654 3356789999999985544333332 23455554 3 999999999 66555432111 2233345
Q ss_pred HhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhh--CCCceeEEEEcCCccc
Q 004368 576 FTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPFVD 631 (758)
Q Consensus 576 ~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~~~d 631 (758)
+.|..+|++|+.++ -..||++|.|+|+|+||+++.+++.. .+.+|+++|+.+|...
T Consensus 154 ~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 154 LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 78999999999775 34799999999999999999888876 2458999999988654
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-08 Score=101.18 Aligned_cols=211 Identities=18% Similarity=0.192 Sum_probs=125.5
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHH-HHHHcCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAE-YLIKNCYCT 593 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d 593 (758)
..+.+|++|| ||.+..- |-..+..|+. ...|..+|..|-|.+.+.=.. ......-..+++.++ |-++++.
T Consensus 89 ~~~plVliHG-yGAg~g~-f~~Nf~~La~-~~~vyaiDllG~G~SSRP~F~----~d~~~~e~~fvesiE~WR~~~~L-- 159 (365)
T KOG4409|consen 89 NKTPLVLIHG-YGAGLGL-FFRNFDDLAK-IRNVYAIDLLGFGRSSRPKFS----IDPTTAEKEFVESIEQWRKKMGL-- 159 (365)
T ss_pred CCCcEEEEec-cchhHHH-HHHhhhhhhh-cCceEEecccCCCCCCCCCCC----CCcccchHHHHHHHHHHHHHcCC--
Confidence 3455677888 5554332 4444556665 899999999998866543211 111222346677665 5566665
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCC----C------------------------CCC-
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPT----I------------------------PLT- 644 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~----~------------------------~~~- 644 (758)
++..++|||+||||+...|.++|++++-.|+..|.-=..+-..+.+ . |+.
T Consensus 160 -~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp 238 (365)
T KOG4409|consen 160 -EKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGP 238 (365)
T ss_pred -cceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccch
Confidence 6999999999999999999999999999999887411110000000 0 000
Q ss_pred ------------------hhhh-hcc------CCCCCHHHHHHHHhc-----Cc-ccccCCC--CCCeEEEeccCCCCCC
Q 004368 645 ------------------TAEW-EEW------GDPWKEEFYFYMKSY-----SP-VDNVKAQ--NYPHILVTAGLNDPRV 691 (758)
Q Consensus 645 ------------------~~~~-~e~------g~p~~~~~~~~l~~~-----sp-~~~i~~~--~~P~~Li~~G~~D~~V 691 (758)
..++ .+| .+|.-+..+..|.+. .| ++++..+ .+| +++++|++|= +
T Consensus 239 ~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~p-v~fiyG~~dW-m 316 (365)
T KOG4409|consen 239 KLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVP-VTFIYGDRDW-M 316 (365)
T ss_pred HHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCC-EEEEecCccc-c
Confidence 0000 001 122222233332211 12 2444444 488 9999999986 5
Q ss_pred CChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 692 MYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 692 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
...-+.++...|. ...++.+..+ ++||..-.+.++.+++. +..++.
T Consensus 317 D~~~g~~~~~~~~--~~~~~~~~v~---~aGHhvylDnp~~Fn~~--v~~~~~ 362 (365)
T KOG4409|consen 317 DKNAGLEVTKSLM--KEYVEIIIVP---GAGHHVYLDNPEFFNQI--VLEECD 362 (365)
T ss_pred cchhHHHHHHHhh--cccceEEEec---CCCceeecCCHHHHHHH--HHHHHh
Confidence 6666777776663 3345566776 99998877777777765 344443
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.8e-09 Score=108.40 Aligned_cols=213 Identities=19% Similarity=0.233 Sum_probs=127.7
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHc-CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 592 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 592 (758)
+..|.||++|| ++. ....|......|... |+.|..+|..|+|-.+ +.+ ....-+..+....+..+..+...
T Consensus 56 ~~~~pvlllHG-F~~-~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s--~~~----~~~~y~~~~~v~~i~~~~~~~~~ 127 (326)
T KOG1454|consen 56 KDKPPVLLLHG-FGA-SSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSS--PLP----RGPLYTLRELVELIRRFVKEVFV 127 (326)
T ss_pred CCCCcEEEecc-ccC-CcccHhhhccccccccceEEEEEecCCCCcCC--CCC----CCCceehhHHHHHHHHHHHhhcC
Confidence 45788999999 444 445566655555554 6999999999965221 111 11124556677777666555443
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhCCCceeEEE---EcCCccchhhcc-----------CC---CCCCCC---h-hhhh--
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAV---AAVPFVDVLTTM-----------LD---PTIPLT---T-AEWE-- 649 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v---~~~~~~d~~~~~-----------~~---~~~~~~---~-~~~~-- 649 (758)
+++.++|+|+||+++..+|+.+|+..+.+| ...+........ .. .-.|.. . ..|.
T Consensus 128 --~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 205 (326)
T KOG1454|consen 128 --EPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEG 205 (326)
T ss_pred --cceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHh
Confidence 449999999999999999999999999998 443332211110 00 000000 0 0000
Q ss_pred -------ccCCC-CCHHHHHHH------------------Hh-----cCcccccCCCC-CCeEEEeccCCCCCCCChHHH
Q 004368 650 -------EWGDP-WKEEFYFYM------------------KS-----YSPVDNVKAQN-YPHILVTAGLNDPRVMYSEPA 697 (758)
Q Consensus 650 -------e~g~p-~~~~~~~~l------------------~~-----~sp~~~i~~~~-~P~~Li~~G~~D~~V~~~~~~ 697 (758)
.+.++ .+.+.+..+ .. ..+...++++. +| +||++|..|..+|.+.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p-vlii~G~~D~~~p~~~~~ 284 (326)
T KOG1454|consen 206 LLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCP-VLIIWGDKDQIVPLELAE 284 (326)
T ss_pred hhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCc-eEEEEcCcCCccCHHHHH
Confidence 00111 011110000 00 22334556664 88 999999999999998777
Q ss_pred HHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 698 KFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 698 ~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
++.+++ ..++++.++ ++||.-..++++.+... +..|+.+.
T Consensus 285 ~~~~~~----pn~~~~~I~---~~gH~~h~e~Pe~~~~~--i~~Fi~~~ 324 (326)
T KOG1454|consen 285 ELKKKL----PNAELVEIP---GAGHLPHLERPEEVAAL--LRSFIARL 324 (326)
T ss_pred HHHhhC----CCceEEEeC---CCCcccccCCHHHHHHH--HHHHHHHh
Confidence 776655 344566665 99998777777766654 67888765
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=128.66 Aligned_cols=234 Identities=15% Similarity=0.094 Sum_probs=131.1
Q ss_pred EEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhH
Q 004368 499 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTD 578 (758)
Q Consensus 499 i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D 578 (758)
+..++.+.... .....|+||++||..+... .|......| ..+|.|+.+|+||+|.+...-...........++++
T Consensus 1356 ~~~~i~~~~~G--~~~~~~~vVllHG~~~s~~--~w~~~~~~L-~~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~ 1430 (1655)
T PLN02980 1356 FSCLIKVHEVG--QNAEGSVVLFLHGFLGTGE--DWIPIMKAI-SGSARCISIDLPGHGGSKIQNHAKETQTEPTLSVEL 1430 (1655)
T ss_pred eEEEEEEEecC--CCCCCCeEEEECCCCCCHH--HHHHHHHHH-hCCCEEEEEcCCCCCCCCCccccccccccccCCHHH
Confidence 55555544321 1224589999999655443 354444444 457999999999998764210000000111234566
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh-------ccCCCC----C-CCChh
Q 004368 579 FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT-------TMLDPT----I-PLTTA 646 (758)
Q Consensus 579 ~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~-------~~~~~~----~-~~~~~ 646 (758)
+.+.+..++++ ...+++.++|+|+||.++..++.++|++++++|+.++...+.. ...... + .....
T Consensus 1431 ~a~~l~~ll~~--l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 1508 (1655)
T PLN02980 1431 VADLLYKLIEH--ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLE 1508 (1655)
T ss_pred HHHHHHHHHHH--hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHH
Confidence 66655555544 2357999999999999999999999999999887765321100 000000 0 00000
Q ss_pred hh-hccC----------CC------------CCHHHH-HHHHhcC------cccccCCCCCCeEEEeccCCCCCCCChHH
Q 004368 647 EW-EEWG----------DP------------WKEEFY-FYMKSYS------PVDNVKAQNYPHILVTAGLNDPRVMYSEP 696 (758)
Q Consensus 647 ~~-~e~g----------~p------------~~~~~~-~~l~~~s------p~~~i~~~~~P~~Li~~G~~D~~V~~~~~ 696 (758)
.+ ..|. .+ .+...+ ..+...+ -...+.++++| +|+++|++|..++ ..+
T Consensus 1509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~P-tLlI~Ge~D~~~~-~~a 1586 (1655)
T PLN02980 1509 IFLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTP-LLLVVGEKDVKFK-QIA 1586 (1655)
T ss_pred HHHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCC-EEEEEECCCCccH-HHH
Confidence 00 0010 00 000000 0111111 11235566888 9999999998764 667
Q ss_pred HHHHHHHHhcCC--------CCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 697 AKFVAKLREMKT--------DDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 697 ~~~~~~L~~~~~--------~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
.++.+.+..... ..++++++ ++||.......+.+.+. +..||.+.
T Consensus 1587 ~~~~~~i~~a~~~~~~~~~~~a~lvvI~---~aGH~~~lE~Pe~f~~~--I~~FL~~~ 1639 (1655)
T PLN02980 1587 QKMYREIGKSKESGNDKGKEIIEIVEIP---NCGHAVHLENPLPVIRA--LRKFLTRL 1639 (1655)
T ss_pred HHHHHHccccccccccccccceEEEEEC---CCCCchHHHCHHHHHHH--HHHHHHhc
Confidence 777776654210 13566776 99998765555555443 56788764
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-09 Score=105.46 Aligned_cols=115 Identities=19% Similarity=0.275 Sum_probs=87.7
Q ss_pred EEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhH
Q 004368 499 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTD 578 (758)
Q Consensus 499 i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D 578 (758)
.|..+++|.+. +.+|+||+.|| +.....+ |......+++.||+|+.++...-.. .....+.++
T Consensus 4 ~~l~v~~P~~~----g~yPVv~f~~G-~~~~~s~-Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~~ 66 (259)
T PF12740_consen 4 KPLLVYYPSSA----GTYPVVLFLHG-FLLINSW-YSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVAS 66 (259)
T ss_pred CCeEEEecCCC----CCcCEEEEeCC-cCCCHHH-HHHHHHHHHhCceEEEEecccccCC-----------CCcchhHHH
Confidence 35677888765 78999999999 4433333 7777789999999999999554221 122345678
Q ss_pred HHHHHHHHHHc--------CCCCCCcEEEEEeChhHHHHHHHHhhC-----CCceeEEEEcCCcc
Q 004368 579 FIACAEYLIKN--------CYCTKEKLCIEGRSAGGLLIGAVLNMR-----PDLFKAAVAAVPFV 630 (758)
Q Consensus 579 ~~~~~~~l~~~--------~~~d~~~i~i~G~S~GG~l~~~~~~~~-----p~~f~a~v~~~~~~ 630 (758)
+.+.++||.+. .-.|-+||+|+|||.||-++.+++..+ +.+|+|+++..|+-
T Consensus 67 ~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 67 AAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred HHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 88889998763 125788999999999999999888876 55899999999974
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-08 Score=110.98 Aligned_cols=224 Identities=15% Similarity=0.150 Sum_probs=127.9
Q ss_pred CCCEEEEecCCCccCC----------CCCCChHH----HHHHHcCcEEEEEecCCCCC--------CchhHHhcccc---
Q 004368 515 SDPLLLYGYGSYEICN----------DPAFNSSR----LSLLDRGFIFAIAQIRGGGE--------LGRQWYENGKF--- 569 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~----------~~~~~~~~----~~l~~~G~~v~~~~~RG~g~--------~G~~~~~~~~~--- 569 (758)
+.++||++|+-.+.+. .++|.... ..+=..-|-|+++|+-|++. .|..-...+.+
T Consensus 55 ~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~~ 134 (389)
T PRK06765 55 KSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKPY 134 (389)
T ss_pred CCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCcc
Confidence 4689999998444221 12221111 23333569999999998752 22111111111
Q ss_pred --cCCcChHhHHHHHHHHHHHcCCCCCCcEE-EEEeChhHHHHHHHHhhCCCceeEEEEcCCcc--c-h-----hh----
Q 004368 570 --LKKKNTFTDFIACAEYLIKNCYCTKEKLC-IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV--D-V-----LT---- 634 (758)
Q Consensus 570 --~~~~~~~~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~--d-~-----~~---- 634 (758)
..-..++.|+++++..++++-.+ +++. ++|+|+||.+++.++.++|++++.+|+.+.-. + + ..
T Consensus 135 ~~~fP~~t~~d~~~~~~~ll~~lgi--~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~~~~~~~~~~~~~~~~ 212 (389)
T PRK06765 135 GMDFPVVTILDFVRVQKELIKSLGI--ARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQNDAWTSVNVLQNWAE 212 (389)
T ss_pred CCCCCcCcHHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCCCChhHHHHHHHHHHH
Confidence 12236789988888877765333 6775 99999999999999999999999888775421 1 1 01
Q ss_pred -ccCCCC----------CCC---------------Chhhh-hccCCC-------------------------------CC
Q 004368 635 -TMLDPT----------IPL---------------TTAEW-EEWGDP-------------------------------WK 656 (758)
Q Consensus 635 -~~~~~~----------~~~---------------~~~~~-~e~g~p-------------------------------~~ 656 (758)
...++. .|. ....+ ..++.- .|
T Consensus 213 ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~~e~yl~~~~~~~~~~~D 292 (389)
T PRK06765 213 AIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTSFEKEINKATYRRAELVD 292 (389)
T ss_pred HHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhhHHHHHHHHHHHhhhccC
Confidence 001111 010 00000 111110 01
Q ss_pred HHHHHH----HHhc-------CcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCC
Q 004368 657 EEFYFY----MKSY-------SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 657 ~~~~~~----l~~~-------sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
+..|-+ +..+ +....+.+++.| +|+++|..|..+|+.+++++++.+...+...+++.++ .+.||..
T Consensus 293 an~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~P-tLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~--s~~GH~~ 369 (389)
T PRK06765 293 ANHWLYLAKAVQLFDAGHGFSSLEEALSNIEAN-VLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIE--SINGHMA 369 (389)
T ss_pred hhhHHHHHHHHHhcCCccccCCHHHHHhcCCCC-EEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEEC--CCCCcch
Confidence 111111 1111 122234466888 9999999999999999999999887655555566664 2489976
Q ss_pred CCChHHHHHHHHHHHHHHHH
Q 004368 726 KSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 726 ~~~~~~~~~~~~~~~~fl~~ 745 (758)
.....+.+... +.+||.+
T Consensus 370 ~le~p~~~~~~--I~~FL~~ 387 (389)
T PRK06765 370 GVFDIHLFEKK--IYEFLNR 387 (389)
T ss_pred hhcCHHHHHHH--HHHHHcc
Confidence 55454544443 4567654
|
|
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=105.96 Aligned_cols=226 Identities=16% Similarity=0.155 Sum_probs=140.4
Q ss_pred CCCCCEEEEecCCCccC-CCCCCChHHHHHHHcCcEEEEEecC--------------CCC-CCchhHHhcccccCCcChH
Q 004368 513 DGSDPLLLYGYGSYEIC-NDPAFNSSRLSLLDRGFIFAIAQIR--------------GGG-ELGRQWYENGKFLKKKNTF 576 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~~G~~v~~~~~R--------------G~g-~~G~~~~~~~~~~~~~~~~ 576 (758)
+++.|++++.||--+.. .-..+..........|++++.+|.. |++ ++-.+|.......+ ...+
T Consensus 51 ~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~-~~q~ 129 (316)
T COG0627 51 GRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASG-PYQW 129 (316)
T ss_pred CCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccC-ccch
Confidence 56788888888843221 1111222223444568888887432 322 33344444321111 3445
Q ss_pred hHHHHH-HH-HHHHcCCCCC--CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCC---CCCCChhhh-
Q 004368 577 TDFIAC-AE-YLIKNCYCTK--EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP---TIPLTTAEW- 648 (758)
Q Consensus 577 ~D~~~~-~~-~l~~~~~~d~--~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~---~~~~~~~~~- 648 (758)
++++.- +- .+.+...++. ++.+|+|+||||+-++.+++++|++|+.+.+.+|+++..+.+... ..++....+
T Consensus 130 ~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~ 209 (316)
T COG0627 130 ETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFN 209 (316)
T ss_pred hHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHH
Confidence 666553 11 2333444455 389999999999999999999999999999999999976544333 122222222
Q ss_pred hccCCCCCHHHHHHHHhcCcccccCC---C----------CCCeEEEeccCCCCCCC--ChHHHHHHHHHHhcCCCCceE
Q 004368 649 EEWGDPWKEEFYFYMKSYSPVDNVKA---Q----------NYPHILVTAGLNDPRVM--YSEPAKFVAKLREMKTDDNIL 713 (758)
Q Consensus 649 ~e~g~p~~~~~~~~l~~~sp~~~i~~---~----------~~P~~Li~~G~~D~~V~--~~~~~~~~~~L~~~~~~~~~~ 713 (758)
..||...++ .+++++|..++++ . .-|.+++.+|..|.... ...++++.+++++.|.+....
T Consensus 210 ~~~G~~~~~----~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~ 285 (316)
T COG0627 210 AMLGPDSDP----AWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVR 285 (316)
T ss_pred HhcCCCccc----cccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceee
Confidence 235655432 2356788777764 1 23568999999998764 445889999999999887654
Q ss_pred EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCC
Q 004368 714 LFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 714 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
.. ++..|. ..-.-..+.+.+.|+...|+..
T Consensus 286 ~~---~~G~Hs----w~~w~~~l~~~~~~~a~~l~~~ 315 (316)
T COG0627 286 DQ---PGGDHS----WYFWASQLADHLPWLAGALGLA 315 (316)
T ss_pred eC---CCCCcC----HHHHHHHHHHHHHHHHHHhccC
Confidence 44 477884 2233334566789999888764
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=108.91 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=64.8
Q ss_pred CCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCc------h---hHH-------h-----cccc-c
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG------R---QWY-------E-----NGKF-L 570 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G------~---~~~-------~-----~~~~-~ 570 (758)
.++.|+||+.||-.+.. ..|+..+..||++||+|+.++.|-+.... . ... + .... .
T Consensus 97 ~~~~PvvIFSHGlgg~R--~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T PF03403_consen 97 PGKFPVVIFSHGLGGSR--TSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDP 174 (379)
T ss_dssp SS-EEEEEEE--TT--T--TTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----G
T ss_pred CCCCCEEEEeCCCCcch--hhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccc
Confidence 36799999999965543 34888899999999999999999653211 1 000 0 0000 0
Q ss_pred CC---------cChHhHHHHHHHHHHH--c------------------CCCCCCcEEEEEeChhHHHHHHHHhhCCCcee
Q 004368 571 KK---------KNTFTDFIACAEYLIK--N------------------CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621 (758)
Q Consensus 571 ~~---------~~~~~D~~~~~~~l~~--~------------------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~ 621 (758)
.. ..-..|+..+++.|.+ . +-+|.++|+++|||+||..++.++.+. ..|+
T Consensus 175 ~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~ 253 (379)
T PF03403_consen 175 EEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFK 253 (379)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcc
Confidence 00 0112445556665542 1 346789999999999999999888875 6899
Q ss_pred EEEEcCCc
Q 004368 622 AAVAAVPF 629 (758)
Q Consensus 622 a~v~~~~~ 629 (758)
|+|+.-|.
T Consensus 254 ~~I~LD~W 261 (379)
T PF03403_consen 254 AGILLDPW 261 (379)
T ss_dssp EEEEES--
T ss_pred eEEEeCCc
Confidence 99976664
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-08 Score=115.17 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=66.5
Q ss_pred eCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccC
Q 004368 492 SASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK 571 (758)
Q Consensus 492 ~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~ 571 (758)
...||.+|..... . +...|+||++||..+.. ..|......| .+||.|+.+|+||+|...... ..
T Consensus 8 ~~~~g~~l~~~~~-g------~~~~~~ivllHG~~~~~--~~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~------~~ 71 (582)
T PRK05855 8 VSSDGVRLAVYEW-G------DPDRPTVVLVHGYPDNH--EVWDGVAPLL-ADRFRVVAYDVRGAGRSSAPK------RT 71 (582)
T ss_pred EeeCCEEEEEEEc-C------CCCCCeEEEEcCCCchH--HHHHHHHHHh-hcceEEEEecCCCCCCCCCCC------cc
Confidence 3458877765422 1 12368999999965443 2355555555 679999999999998764311 11
Q ss_pred CcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhh
Q 004368 572 KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM 615 (758)
Q Consensus 572 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 615 (758)
...+++++.+.+..+++.-.. ..++.++|||+||.++..++.+
T Consensus 72 ~~~~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 72 AAYTLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred cccCHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhC
Confidence 122345555544444443111 2349999999999888777665
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-08 Score=108.35 Aligned_cols=129 Identities=21% Similarity=0.259 Sum_probs=88.3
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCC---ccCCCCCCChHHHHHHHcC-cEEEEEecCCCCCCc-hhHHhcc
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSY---EICNDPAFNSSRLSLLDRG-FIFAIAQIRGGGELG-RQWYENG 567 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~---~~~~~~~~~~~~~~l~~~G-~~v~~~~~RG~g~~G-~~~~~~~ 567 (758)
|.|..-+ -|..|. . ..++.||+||+|||. |+...+.| .-..|+.+| ++|+.+|||-+- +| -++....
T Consensus 76 sEDCL~L--NIwaP~-~--~a~~~PVmV~IHGG~y~~Gs~s~~~y--dgs~La~~g~vVvVSvNYRLG~-lGfL~~~~~~ 147 (491)
T COG2272 76 SEDCLYL--NIWAPE-V--PAEKLPVMVYIHGGGYIMGSGSEPLY--DGSALAARGDVVVVSVNYRLGA-LGFLDLSSLD 147 (491)
T ss_pred cccceeE--EeeccC-C--CCCCCcEEEEEeccccccCCCccccc--ChHHHHhcCCEEEEEeCccccc-ceeeehhhcc
Confidence 5566444 344565 1 235689999999983 22233323 347888988 999999999543 22 1222222
Q ss_pred --cccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhCCC---ceeEEEEcCCcc
Q 004368 568 --KFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAVPFV 630 (758)
Q Consensus 568 --~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~~~~ 630 (758)
........+.|++.|++|+.++ -..||++|.|+|.|+|++.++.+++. |. +|+-+|+.+|-.
T Consensus 148 ~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~ 217 (491)
T COG2272 148 TEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAA 217 (491)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCC
Confidence 1111125679999999999766 44699999999999999998888875 64 788888888754
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.1e-06 Score=85.58 Aligned_cols=204 Identities=14% Similarity=0.057 Sum_probs=109.9
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc-C-cceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV-G-VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~-~-~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
....|.+||++|.|..+..| ..++|++||++++.++++-. + ...+..+||++ .++|+... ..|+..+|.+
T Consensus 39 ~~~~ft~dG~kllF~s~~dg--~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-----~~l~~vdL~T 111 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDG--NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-----RSLRRVDLDT 111 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTS--S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-----TEEEEEETTT
T ss_pred cCCCcCCCCCEEEEEeccCC--CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-----CeEEEEECCc
Confidence 35588999999999999888 48899999999999987542 2 12346889999 88887643 2699999998
Q ss_pred CCCCcEEEeeecCCceeeEEEE--cCCCcEEEEEecC-------------------CcceEEEEEeCCCCCceEEeeccc
Q 004368 271 DQSNDICLYHEKDDIYSLGLQA--SESKKFLFIASES-------------------KITRFVFYLDVSKPEELRVLTPRV 329 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~--S~Dg~~l~~~s~~-------------------~~~~~l~~~d~~~~~~~~~l~~~~ 329 (758)
. +...|++.++. +.....| ..|++.++..... ...++|+.+|+.+++ .+.+....
T Consensus 112 ~--e~~~vy~~p~~-~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~-~~~v~~~~ 187 (386)
T PF14583_consen 112 L--EERVVYEVPDD-WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE-RKVVFEDT 187 (386)
T ss_dssp ----EEEEEE--TT-EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEEEES
T ss_pred C--cEEEEEECCcc-cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc-eeEEEecC
Confidence 7 45677776543 3322334 4578776544321 123579999999998 77776655
Q ss_pred cceee-EEeecCCEEEEEEcCCCC--CCcEEEEEeCCCCCcceeeecCCCC--ceeeeEEEeCCEEEEEEEeCCeeEEEE
Q 004368 330 VGVDT-AASHRGNHFFITRRSDEL--FNSELLACPVDNTSETTVLIPHRES--VKLQDIQLFIDHLAVYEREGGLQKITT 404 (758)
Q Consensus 330 ~~~~~-~~s~dg~~l~~~s~~~~~--~~~~L~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~l~v 404 (758)
..... .+||....++....++.. ...|++.++.++. ....+...... ..-+-|.+++..+.+.....+...-+|
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence 44433 377766666655555422 2358999998763 22334333222 122445566777776655444444455
Q ss_pred EEcCC
Q 004368 405 YRLPA 409 (758)
Q Consensus 405 ~~l~~ 409 (758)
..++.
T Consensus 267 ~~~d~ 271 (386)
T PF14583_consen 267 AGYDP 271 (386)
T ss_dssp EEE-T
T ss_pred EeeCC
Confidence 55554
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.7e-07 Score=87.01 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=91.1
Q ss_pred eeEEECCCCCEEEEEEeC----CCC---eEEEEEEEECCCCceeecccc--CcceeEEEecCC-eEEEEEeCCCCCCceE
Q 004368 194 GCFQVSPDNKLVAYAEDT----KGD---EIYTVYVIDIETGTPVGKPLV--GVTASVEWAGNE-ALVYITMDEILRPDKA 263 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~----~G~---e~~~l~v~dl~~g~~~~~~~~--~~~~~~~wspDg-~l~y~~~~~~~~~~~v 263 (758)
..+.|+|+|++|++..+. .+. ....|+.++..+.......+. +.+..++|+|+| +|+.+... .+.++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~---~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS---MPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc---CCccc
Confidence 356899999999998772 221 136788888776655444333 236679999999 77666432 23356
Q ss_pred EEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEE
Q 004368 264 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHF 343 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l 343 (758)
.++++.. +.+..+.. .. .-.+.|||+|++|++........+|.++|..+.+ ..............|||||++|
T Consensus 86 ~lyd~~~---~~i~~~~~--~~-~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-~i~~~~~~~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 86 TLYDVKG---KKIFSFGT--QP-RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-KISTFEHSDATDVEWSPDGRYL 158 (194)
T ss_pred EEEcCcc---cEeEeecC--CC-ceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE-EeeccccCcEEEEEEcCCCCEE
Confidence 6667642 22233322 11 2257899999999987654444567888887543 2111122222334599999998
Q ss_pred EEEEcC
Q 004368 344 FITRRS 349 (758)
Q Consensus 344 ~~~s~~ 349 (758)
+..+..
T Consensus 159 ~ta~t~ 164 (194)
T PF08662_consen 159 ATATTS 164 (194)
T ss_pred EEEEec
Confidence 877653
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-05 Score=84.40 Aligned_cols=241 Identities=15% Similarity=0.084 Sum_probs=130.2
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
..+.|+|||+.++.+.... ..|+++|+.+++.... ........+.|+|||..+|+.... ...++.+++.+.
T Consensus 34 ~~l~~~~dg~~l~~~~~~~----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~---~~~l~~~d~~~~- 105 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDS----DTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANED---DNLVTVIDIETR- 105 (300)
T ss_pred CceEECCCCCEEEEEECCC----CeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCC---CCeEEEEECCCC-
Confidence 4578999999875554322 4699999999887652 222223457999999544544322 125888888764
Q ss_pred CCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCC
Q 004368 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDEL 352 (758)
Q Consensus 273 ~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~ 352 (758)
+....+.... ...++.++|||+++++.... ...++.+|..+++....+..........|+++|+.|++.+..+
T Consensus 106 -~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-- 178 (300)
T TIGR03866 106 -KVLAEIPVGV--EPEGMAVSPDGKIVVNTSET--TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG-- 178 (300)
T ss_pred -eEEeEeeCCC--CcceEEECCCCCEEEEEecC--CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC--
Confidence 2222232111 12357899999998876543 2345667877654111121111112335899999887764433
Q ss_pred CCcEEEEEeCCCCCcceeeecCC-----CCceeeeE--EEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeec
Q 004368 353 FNSELLACPVDNTSETTVLIPHR-----ESVKLQDI--QLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEF 425 (758)
Q Consensus 353 ~~~~L~~~~~~~~~~~~~l~~~~-----~~~~~~~~--~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~ 425 (758)
..+..+|+++......+.... ......++ +.+++.+++....+ ..+.+|++.. ++.. ..+..
T Consensus 179 --~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~-~~~~------~~~~~ 247 (300)
T TIGR03866 179 --GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA--NRVAVVDAKT-YEVL------DYLLV 247 (300)
T ss_pred --CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC--CeEEEEECCC-CcEE------EEEEe
Confidence 467778876532211111110 11112233 44455655443322 3578888763 3211 11111
Q ss_pred cCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 426 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 426 p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
...+..+.+++++..++.+. ..-..+..+|+.+++
T Consensus 248 ---~~~~~~~~~~~~g~~l~~~~---~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 248 ---GQRVWQLAFTPDEKYLLTTN---GVSNDVSVIDVAALK 282 (300)
T ss_pred ---CCCcceEEECCCCCEEEEEc---CCCCeEEEEECCCCc
Confidence 11233455677777664321 223468899988877
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.9e-07 Score=101.69 Aligned_cols=107 Identities=16% Similarity=0.046 Sum_probs=71.0
Q ss_pred CEEEEecCCCccCCCCC---CChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 517 PLLLYGYGSYEICNDPA---FNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~---~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
+-||++||..+...-.. -...+..|+++||.|+++|.||.|.....+. ......+++.++++++.+. +.
T Consensus 189 ~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~------~ddY~~~~i~~al~~v~~~--~g 260 (532)
T TIGR01838 189 TPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKT------FDDYIRDGVIAALEVVEAI--TG 260 (532)
T ss_pred CcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCC------hhhhHHHHHHHHHHHHHHh--cC
Confidence 44666777433221111 1346678999999999999999886543221 1112335678888888764 35
Q ss_pred CCcEEEEEeChhHHHHHH----HHhhC-CCceeEEEEcCCccc
Q 004368 594 KEKLCIEGRSAGGLLIGA----VLNMR-PDLFKAAVAAVPFVD 631 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~----~~~~~-p~~f~a~v~~~~~~d 631 (758)
.+++.++|+|+||.+++. +++.. |+++++++..+..+|
T Consensus 261 ~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~D 303 (532)
T TIGR01838 261 EKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLD 303 (532)
T ss_pred CCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcC
Confidence 689999999999998522 34444 778888887776666
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-06 Score=86.14 Aligned_cols=204 Identities=19% Similarity=0.133 Sum_probs=122.0
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhc
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 566 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~ 566 (758)
..+.+.+.+|..+..--.|-... ..+.+..+||-+||.||+..+ |......|.+.|+.++.+|++|.|-......
T Consensus 7 ~~~k~~~~~~~~~~~~a~y~D~~-~~gs~~gTVv~~hGsPGSH~D--FkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~-- 81 (297)
T PF06342_consen 7 KLVKFQAENGKIVTVQAVYEDSL-PSGSPLGTVVAFHGSPGSHND--FKYIRPPLDEAGIRFIGINYPGFGFTPGYPD-- 81 (297)
T ss_pred EEEEcccccCceEEEEEEEEecC-CCCCCceeEEEecCCCCCccc--hhhhhhHHHHcCeEEEEeCCCCCCCCCCCcc--
Confidence 34555667777666666665544 333445699999999998654 7778889999999999999999875432111
Q ss_pred ccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc-cc------------hh
Q 004368 567 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF-VD------------VL 633 (758)
Q Consensus 567 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~-~d------------~~ 633 (758)
. ..+-.+-..-++.|.++=-++ +++.++|||.|+-.|+.++..+|- .++++.+|+ +- .+
T Consensus 82 ----~-~~~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~~--~g~~lin~~G~r~HkgIrp~~r~~~i 153 (297)
T PF06342_consen 82 ----Q-QYTNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHPL--HGLVLINPPGLRPHKGIRPLSRMETI 153 (297)
T ss_pred ----c-ccChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCcc--ceEEEecCCccccccCcCHHHHHHHH
Confidence 1 111133334444444443343 899999999999999999998863 455555442 10 00
Q ss_pred hccCCCCCCCChhh------hhccCCC--CCHHHHHHHHhcCc---------ccccCCCCCCeEEEeccCCCCCCCChHH
Q 004368 634 TTMLDPTIPLTTAE------WEEWGDP--WKEEFYFYMKSYSP---------VDNVKAQNYPHILVTAGLNDPRVMYSEP 696 (758)
Q Consensus 634 ~~~~~~~~~~~~~~------~~e~g~p--~~~~~~~~l~~~sp---------~~~i~~~~~P~~Li~~G~~D~~V~~~~~ 696 (758)
.++.+ -+|..... |...|-- .-.+....|+...- ++.+++.++| +|+..|.+|-.|.-+.+
T Consensus 154 ~~l~~-~lp~~~~~~i~~~~y~~iG~KV~~GeeA~na~r~m~~~df~~q~~~I~~ln~~~ik-vli~ygg~DhLIEeeI~ 231 (297)
T PF06342_consen 154 NYLYD-LLPRFIINAIMYFYYRMIGFKVSDGEEAINAMRSMQNCDFEEQKEYIDKLNKKPIK-VLIAYGGKDHLIEEEIS 231 (297)
T ss_pred HHHHH-HhhHHHHHHHHHHHHHHhCeeecChHHHHHHHHHHHhcCHHHHHHHHHHhccCCCc-EEEEEcCcchhhHHHHH
Confidence 01000 01111111 1222322 12233334442221 1233444677 99999999999988877
Q ss_pred HHHHHHHHh
Q 004368 697 AKFVAKLRE 705 (758)
Q Consensus 697 ~~~~~~L~~ 705 (758)
.+++...+.
T Consensus 232 ~E~a~~f~~ 240 (297)
T PF06342_consen 232 FEFAMKFKG 240 (297)
T ss_pred HHHHHHhCC
Confidence 777776654
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.7e-07 Score=89.29 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=74.6
Q ss_pred CCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCC--------------CchhHHhcccccC--C----
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGE--------------LGRQWYENGKFLK--K---- 572 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~--------------~G~~~~~~~~~~~--~---- 572 (758)
++++|+||+.||-.+. ..-|+..+..|+++||+|+++..|-... +-.+|...-.... +
T Consensus 115 ~~k~PvvvFSHGLggs--Rt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~i 192 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLGGS--RTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHI 192 (399)
T ss_pred CCCccEEEEecccccc--hhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEe
Confidence 6789999999994443 3448888899999999999999986531 2233432111000 0
Q ss_pred --cCh---HhHHHHHHHHHHH---------------------cCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEc
Q 004368 573 --KNT---FTDFIACAEYLIK---------------------NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 626 (758)
Q Consensus 573 --~~~---~~D~~~~~~~l~~---------------------~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 626 (758)
++. ..+...|++-|.+ ++-+|..+++|+|||.||..+++....+ ..|+|+|+.
T Consensus 193 rNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~FrcaI~l 271 (399)
T KOG3847|consen 193 RNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRCAIAL 271 (399)
T ss_pred eCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceeeeeee
Confidence 111 1233333333322 2346788999999999999998888864 579999965
Q ss_pred CCc
Q 004368 627 VPF 629 (758)
Q Consensus 627 ~~~ 629 (758)
-++
T Consensus 272 D~W 274 (399)
T KOG3847|consen 272 DAW 274 (399)
T ss_pred eee
Confidence 543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.8e-06 Score=86.03 Aligned_cols=246 Identities=11% Similarity=0.175 Sum_probs=157.2
Q ss_pred EeeEEECCC--CCEEEEEEeCCCCeEEEEEEEECCCCceeeccc-cCcceeEEEecCC-eEEEEEe--CCCCCCceEEEE
Q 004368 193 VGCFQVSPD--NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITM--DEILRPDKAWLH 266 (758)
Q Consensus 193 i~~~~~SPD--G~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~wspDg-~l~y~~~--~~~~~~~~v~~~ 266 (758)
+.+.-..|| |.+|.|+.. -+||..++.+|+.++++. -++...+.++||| +++|++. .......+||.+
T Consensus 39 M~n~~l~PDI~GD~IiFt~~------DdlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v 112 (668)
T COG4946 39 MKNYYLNPDIYGDRIIFTCC------DDLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVV 112 (668)
T ss_pred hhhhhcCCcccCcEEEEEec------hHHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEE
Confidence 334455676 889999886 358999999999887743 3566778999999 8999654 334445679999
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCc---ceEEEEEeCCCCCceEEeeccccceeeEEeecCCEE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI---TRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHF 343 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~---~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l 343 (758)
+...++.+.+.-|. ..+.--..|+|||+.|+.+..... -.++|.+..++.+ ..+|.-+. ....+-.|| .+
T Consensus 113 ~~e~Ge~kRiTyfG---r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~-~e~LnlGp--athiv~~dg-~i 185 (668)
T COG4946 113 PSEDGEAKRITYFG---RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIK-TEPLNLGP--ATHIVIKDG-II 185 (668)
T ss_pred eCCCCcEEEEEEec---cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCce-eeeccCCc--eeeEEEeCC-EE
Confidence 88888665444442 223222359999998876554432 2589999998875 44442221 122244566 56
Q ss_pred EEEEcCC---------CCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCcc
Q 004368 344 FITRRSD---------ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPL 414 (758)
Q Consensus 344 ~~~s~~~---------~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~ 414 (758)
++..|.- |+.+++|+.-...+ ...+.++.-+.+ +...-+.+++++|....+|..+++-.+++ |+.+
T Consensus 186 vigRntydLP~WK~YkGGtrGklWis~d~g-~tFeK~vdl~~~--vS~PmIV~~RvYFlsD~eG~GnlYSvdld--GkDl 260 (668)
T COG4946 186 VIGRNTYDLPHWKGYKGGTRGKLWISSDGG-KTFEKFVDLDGN--VSSPMIVGERVYFLSDHEGVGNLYSVDLD--GKDL 260 (668)
T ss_pred EEccCcccCcccccccCCccceEEEEecCC-cceeeeeecCCC--cCCceEEcceEEEEecccCccceEEeccC--Cchh
Confidence 6666532 24567777644322 233444443333 44556788999999999999887777666 6644
Q ss_pred ccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEEE
Q 004368 415 KSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLK 470 (758)
Q Consensus 415 ~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~~ 470 (758)
.+...|.+ | ..-+.+-|+.+++|+- ...||.||+++.+.+-+
T Consensus 261 -----rrHTnFtd--Y--Y~R~~nsDGkrIvFq~-----~GdIylydP~td~lekl 302 (668)
T COG4946 261 -----RRHTNFTD--Y--YPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKL 302 (668)
T ss_pred -----hhcCCchh--c--cccccCCCCcEEEEec-----CCcEEEeCCCcCcceee
Confidence 22233322 2 2234566899998854 46799999998874433
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.8e-08 Score=98.32 Aligned_cols=78 Identities=26% Similarity=0.247 Sum_probs=62.9
Q ss_pred cEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEE
Q 004368 546 FIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 625 (758)
Q Consensus 546 ~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 625 (758)
|.|+++|.||.|.....| .........+|+.+.++.+.+.-.+ +++.++|+|+||.++..++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHW----DPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSCC----GSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCc----cCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 679999999998765311 1233445678999999998876433 4599999999999999999999999999999
Q ss_pred cCCc
Q 004368 626 AVPF 629 (758)
Q Consensus 626 ~~~~ 629 (758)
.+++
T Consensus 75 ~~~~ 78 (230)
T PF00561_consen 75 ISPP 78 (230)
T ss_dssp ESES
T ss_pred Eeee
Confidence 9885
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-06 Score=84.79 Aligned_cols=180 Identities=20% Similarity=0.183 Sum_probs=97.9
Q ss_pred EEEEecCCCccCCCCCCCh--HHHHHHHcCc--EEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 518 LLLYGYGSYEICNDPAFNS--SRLSLLDRGF--IFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 518 ~vl~~hGg~~~~~~~~~~~--~~~~l~~~G~--~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
.|+|+|| +.++ ..+... ..+.+.+.|. .+..+|.+ ....+.++.++.++++. .
T Consensus 1 ~ilYlHG-F~Ss-p~S~Ka~~l~~~~~~~~~~~~~~~p~l~-------------------~~p~~a~~~l~~~i~~~--~ 57 (187)
T PF05728_consen 1 MILYLHG-FNSS-PQSFKAQALKQYFAEHGPDIQYPCPDLP-------------------PFPEEAIAQLEQLIEEL--K 57 (187)
T ss_pred CeEEecC-CCCC-CCCHHHHHHHHHHHHhCCCceEECCCCC-------------------cCHHHHHHHHHHHHHhC--C
Confidence 4899999 4432 222222 2345666654 45555543 12255666666666654 2
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCC--CCHHHHHHHHhcCcccc
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP--WKEEFYFYMKSYSPVDN 671 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p--~~~~~~~~l~~~sp~~~ 671 (758)
++.++++|.|+||+.+..++.+++ .++ |+.+|.+++...+.. .+... ....++.. ..+..+..++++....
T Consensus 58 ~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~-~iG~~--~~~~~~e~~~~~~~~~~~l~~l~~~~- 130 (187)
T PF05728_consen 58 PENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQD-YIGEQ--TNPYTGESYELTEEHIEELKALEVPY- 130 (187)
T ss_pred CCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHH-hhCcc--ccCCCCccceechHhhhhcceEeccc-
Confidence 345999999999999999988874 445 778888775543311 11110 00111211 1222333333322111
Q ss_pred cCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHH
Q 004368 672 VKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 743 (758)
Q Consensus 672 i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 743 (758)
+ .... ++|++++..|..+++.++.+.++. ...++.. +++|.+.. -.+.+ ..+.+|+
T Consensus 131 ~-~~~~-~~lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~---ggdH~f~~-f~~~l---~~i~~f~ 186 (187)
T PF05728_consen 131 P-TNPE-RYLVLLQTGDEVLDYREAVAKYRG-------CAQIIEE---GGDHSFQD-FEEYL---PQIIAFL 186 (187)
T ss_pred c-CCCc-cEEEEEecCCcccCHHHHHHHhcC-------ceEEEEe---CCCCCCcc-HHHHH---HHHHHhh
Confidence 1 1123 489999999999999766555432 1223333 88997642 22222 2356665
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.4e-08 Score=110.21 Aligned_cols=127 Identities=15% Similarity=0.148 Sum_probs=80.5
Q ss_pred EEEEEEeeccccccCCCCCEEEEecCCCccCCCCC--CChHHHHHHHcCcEEEEEecCCCCCCchhHHhccc-cc-CCcC
Q 004368 499 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA--FNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGK-FL-KKKN 574 (758)
Q Consensus 499 i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~--~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~-~~-~~~~ 574 (758)
+.+-|+.|+.. ..+.+.||+|++|||........ .......++.++.+|+.+|||-+- +| |...+. .. .+-.
T Consensus 109 L~LnI~~P~~~-~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~-~G--fl~~~~~~~~~gN~ 184 (535)
T PF00135_consen 109 LYLNIYTPSNA-SSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGA-FG--FLSLGDLDAPSGNY 184 (535)
T ss_dssp -EEEEEEETSS-SSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HH-HH--H-BSSSTTSHBSTH
T ss_pred HHHhhhhcccc-ccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccc-cc--cccccccccCchhh
Confidence 55666778876 44447999999999744332221 112224567789999999999431 11 111000 01 2345
Q ss_pred hHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhC--CCceeEEEEcCCc
Q 004368 575 TFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPF 629 (758)
Q Consensus 575 ~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~ 629 (758)
.+.|.+.|++|+.++ -.-||++|.|+|+|+||..+...+..- ..+|+.+|+.+|.
T Consensus 185 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 185 GLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 678999999999776 346999999999999999888777652 3589999999984
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-07 Score=92.69 Aligned_cols=200 Identities=16% Similarity=0.141 Sum_probs=80.0
Q ss_pred CCCEEEEecCCCccCCCCCCCh-HHHHHHHcCcEEEEEecCC-CCCCchhHHhcccccCCcChHhHHHHHHHHHHHcC--
Q 004368 515 SDPLLLYGYGSYEICNDPAFNS-SRLSLLDRGFIFAIAQIRG-GGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC-- 590 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~G~~v~~~~~RG-~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-- 590 (758)
+.-+||++-|-...-..-.|.. .+..|-..||.++.+.++- .+++|..-. .++.+|+.+|++||....
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL--------~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSL--------DRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--H--------HHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchh--------hhHHHHHHHHHHHHHHhhcc
Confidence 3457888865322222222333 3345555799999999986 345664322 256799999999999883
Q ss_pred CCCCCcEEEEEeChhHHHHHHHHhhCC-----CceeEEEEcCCccchhhccCC------------------------CCC
Q 004368 591 YCTKEKLCIEGRSAGGLLIGAVLNMRP-----DLFKAAVAAVPFVDVLTTMLD------------------------PTI 641 (758)
Q Consensus 591 ~~d~~~i~i~G~S~GG~l~~~~~~~~p-----~~f~a~v~~~~~~d~~~~~~~------------------------~~~ 641 (758)
....++|++||||-|..-++..+.... ....++|+++|+.|-...... ..+
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 236799999999999998888887642 568999999999983221100 000
Q ss_pred ------------CCChhhhhccCCCC-CHHHHHHHHhcCcc-cccCCCCCCeEEEeccCCCCCCCChHH-HHHHHHHHhc
Q 004368 642 ------------PLTTAEWEEWGDPW-KEEFYFYMKSYSPV-DNVKAQNYPHILVTAGLNDPRVMYSEP-AKFVAKLREM 706 (758)
Q Consensus 642 ------------~~~~~~~~e~g~p~-~~~~~~~l~~~sp~-~~i~~~~~P~~Li~~G~~D~~V~~~~~-~~~~~~L~~~ 706 (758)
|.+...|.....|. +.+.|..-..-.-+ ....++..| +|++.+.+|..||.+-- +++.++++.+
T Consensus 184 p~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~p-lLvl~Sg~DEyvP~~vdk~~Ll~rw~~a 262 (303)
T PF08538_consen 184 PREFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKP-LLVLYSGKDEYVPPWVDKEALLERWKAA 262 (303)
T ss_dssp ----GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S--EEEEEE--TT------------------
T ss_pred eccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCc-eEEEecCCCceecccccccccccccccc
Confidence 11111111111111 11111110000001 233445667 99999999999997543 5777777765
Q ss_pred CCC----CceEEEEecCCCCCCCC
Q 004368 707 KTD----DNILLFKCELGAGHFSK 726 (758)
Q Consensus 707 ~~~----~~~~~~~~~~~~gH~~~ 726 (758)
..+ ...-+++ ++.|...
T Consensus 263 ~~~~~~s~~S~iI~---GA~H~~~ 283 (303)
T PF08538_consen 263 TNPKIWSPLSGIIP---GASHNVS 283 (303)
T ss_dssp ------------------------
T ss_pred cccccccccccccc---ccccccc
Confidence 432 1223455 8999764
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-07 Score=95.13 Aligned_cols=130 Identities=16% Similarity=0.070 Sum_probs=92.8
Q ss_pred EEEEeeCCC-CeEEEEEEEeeccccc--cCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhH
Q 004368 487 ERKWASASD-GTQIPICIVYRKNLVK--LDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 563 (758)
Q Consensus 487 ~~~~~~s~d-G~~i~~~l~~p~~~~~--~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~ 563 (758)
..+++...+ +.+++.++.+|...+. ...+.|+|++.||. |. ...+|......|++.||+|+.++..|+..-+..-
T Consensus 39 ~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~-Gs-~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~ 116 (365)
T COG4188 39 VTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGS-GS-YVTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPA 116 (365)
T ss_pred EEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCC-CC-CccchhhhHHHHhhCceEEEeccCCCcccccCCh
Confidence 344444332 5678888888876510 11479999999993 22 2566888889999999999999999987655544
Q ss_pred HhcccccCC----cChHhHHHHHHHHHHHc-------CCCCCCcEEEEEeChhHHHHHHHHhhCCC
Q 004368 564 YENGKFLKK----KNTFTDFIACAEYLIKN-------CYCTKEKLCIEGRSAGGLLIGAVLNMRPD 618 (758)
Q Consensus 564 ~~~~~~~~~----~~~~~D~~~~~~~l~~~-------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~ 618 (758)
+.++..... ..-..|+-..+++|.+. +-+|+.+|++.|+|+||+.++.++..+.+
T Consensus 117 ~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 117 AYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred hhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 444421111 12346888888888776 35789999999999999999888876554
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-05 Score=81.11 Aligned_cols=195 Identities=15% Similarity=0.149 Sum_probs=107.0
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
..+.|+|||+.++.+.... ..|+++|+.+++.+.. ........++|+|||.++++..... ..++.++..+..
T Consensus 76 ~~~~~~~~g~~l~~~~~~~----~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~---~~~~~~d~~~~~ 148 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDD----NLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT---NMAHFIDTKTYE 148 (300)
T ss_pred cEEEECCCCCEEEEEcCCC----CeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC---CeEEEEeCCCCe
Confidence 4568999999886554322 3699999998765542 2122245689999994444433221 124445655441
Q ss_pred CCcEE-EeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccc-----cc---eeeEEeecCCEE
Q 004368 273 SNDIC-LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-----VG---VDTAASHRGNHF 343 (758)
Q Consensus 273 ~~~~~-v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~-----~~---~~~~~s~dg~~l 343 (758)
... +.....+ ..+.|++||++|++..... ..|+++|+.+++..+.+.... .. ....++++|+.+
T Consensus 149 --~~~~~~~~~~~---~~~~~s~dg~~l~~~~~~~--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 149 --IVDNVLVDQRP---RFAEFTADGKELWVSSEIG--GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred --EEEEEEcCCCc---cEEEECCCCCEEEEEcCCC--CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 111 1111112 2467999999988764322 458888998765222222111 11 123478999987
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 344 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
++....+ .++.++|+.+. .....+.......-..++++++.|+.....++ .|.+|++..
T Consensus 222 ~~~~~~~----~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~--~i~v~d~~~ 280 (300)
T TIGR03866 222 FVALGPA----NRVAVVDAKTY-EVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSN--DVSVIDVAA 280 (300)
T ss_pred EEEcCCC----CeEEEEECCCC-cEEEEEEeCCCcceEEECCCCCEEEEEcCCCC--eEEEEECCC
Confidence 7654332 35888888652 22222222222222234445666654443344 488998873
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-05 Score=82.73 Aligned_cols=191 Identities=16% Similarity=0.182 Sum_probs=110.1
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
+.-.++|++||+||=++...- .-||.+.-++.-.+..++.+ .+..+.||||+ .++-...++. +++.++
T Consensus 227 VWfl~FS~nGkyLAsaSkD~T---aiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~-----~~lwDv 298 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKDST---AIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV-----LSLWDV 298 (519)
T ss_pred EEEEEEcCCCeeEeeccCCce---EEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh-----eeeccC
Confidence 556799999999996554321 33454444333111113333 25668999999 5654444432 778888
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC--ceEEeeccccc-eeeEEeecCCEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVG-VDTAASHRGNHFFI 345 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~--~~~~l~~~~~~-~~~~~s~dg~~l~~ 345 (758)
.++ +-...|.....-...+..|-|||..++..+.+ ..++.+|+++.. .++-+. ... ....+++||++++.
T Consensus 299 ~tg--d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d---r~i~~wdlDgn~~~~W~gvr--~~~v~dlait~Dgk~vl~ 371 (519)
T KOG0293|consen 299 DTG--DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD---RTIIMWDLDGNILGNWEGVR--DPKVHDLAITYDGKYVLL 371 (519)
T ss_pred Ccc--hhhhhcccCcCCCcceeEEccCCceeEecCCC---CcEEEecCCcchhhcccccc--cceeEEEEEcCCCcEEEE
Confidence 887 34455654422223357799999997765443 567888998754 222221 111 23348899999998
Q ss_pred EEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCE-EEEEEEeCCeeEEEEEEcC
Q 004368 346 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~l~v~~l~ 408 (758)
++.+. ++..++.++. ...-++.++. .+.++++.++. ++++-..+ ..+.+|++.
T Consensus 372 v~~d~-----~i~l~~~e~~-~dr~lise~~--~its~~iS~d~k~~LvnL~~--qei~LWDl~ 425 (519)
T KOG0293|consen 372 VTVDK-----KIRLYNREAR-VDRGLISEEQ--PITSFSISKDGKLALVNLQD--QEIHLWDLE 425 (519)
T ss_pred Eeccc-----ceeeechhhh-hhhccccccC--ceeEEEEcCCCcEEEEEccc--CeeEEeecc
Confidence 87543 4555555431 1111444433 46678887764 33333333 247788886
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-06 Score=89.92 Aligned_cols=200 Identities=22% Similarity=0.312 Sum_probs=114.4
Q ss_pred EEEEe-eccccccCCCCCEEEEecCC-CccCCCCCCChH---HHHHHHcCcEEEEEecCCCC--CCchhHHhcccccCCc
Q 004368 501 ICIVY-RKNLVKLDGSDPLLLYGYGS-YEICNDPAFNSS---RLSLLDRGFIFAIAQIRGGG--ELGRQWYENGKFLKKK 573 (758)
Q Consensus 501 ~~l~~-p~~~~~~~~~~P~vl~~hGg-~~~~~~~~~~~~---~~~l~~~G~~v~~~~~RG~g--~~G~~~~~~~~~~~~~ 573 (758)
.|++. |.+. ++ +.-|+|||+||| |.....+..-.. ...+++ ...+++.||.-.. +.| ..-+
T Consensus 108 ~Wlvk~P~~~-~p-k~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~~~~---------~~yP 175 (374)
T PF10340_consen 108 YWLVKAPNRF-KP-KSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSDEHG---------HKYP 175 (374)
T ss_pred EEEEeCCccc-CC-CCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccCC---------CcCc
Confidence 46665 4443 22 345999999997 333333321111 123333 6689999987543 222 2234
Q ss_pred ChHhHHHHHHHHHH-HcCCCCCCcEEEEEeChhHHHHHHHHhhCC-----CceeEEEEcCCccchhhccCCCCCC-----
Q 004368 574 NTFTDFIACAEYLI-KNCYCTKEKLCIEGRSAGGLLIGAVLNMRP-----DLFKAAVAAVPFVDVLTTMLDPTIP----- 642 (758)
Q Consensus 574 ~~~~D~~~~~~~l~-~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p-----~~f~a~v~~~~~~d~~~~~~~~~~~----- 642 (758)
..+.++++..++|+ ++|. ++|.+||.||||.|++.++..-. ..-+.+|+.+|++++......+...
T Consensus 176 tQL~qlv~~Y~~Lv~~~G~---~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~n~ 252 (374)
T PF10340_consen 176 TQLRQLVATYDYLVESEGN---KNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHDNE 252 (374)
T ss_pred hHHHHHHHHHHHHHhccCC---CeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCccccccc
Confidence 56789999999999 6554 78999999999999987775411 1348999999999976211111000
Q ss_pred ----CChhhhhcc-----CCCCCHHHHHHHHhcCcccccCC-----------CCCCeEEEeccCCCCCCCChHHHHHHHH
Q 004368 643 ----LTTAEWEEW-----GDPWKEEFYFYMKSYSPVDNVKA-----------QNYPHILVTAGLNDPRVMYSEPAKFVAK 702 (758)
Q Consensus 643 ----~~~~~~~e~-----g~p~~~~~~~~l~~~sp~~~i~~-----------~~~P~~Li~~G~~D~~V~~~~~~~~~~~ 702 (758)
+.......| |+ .+++.. ....|+-++.. -++ .++|+.|+++.. -.+.++|+++
T Consensus 253 ~~D~l~~~~~~~~~~~y~~~-~~~~~~---~~~~~~~n~~~n~d~~~W~~I~~~~-~vfVi~Ge~Evf--rddI~~~~~~ 325 (374)
T PF10340_consen 253 KRDMLSYKGLSMFGDAYIGN-NDPEND---LNSLPFVNIEYNFDAEDWKDILKKY-SVFVIYGEDEVF--RDDILEWAKK 325 (374)
T ss_pred cccccchhhHHHHHHhhccc-cccccc---cccCCccCcccCCChhHHHHhccCC-cEEEEECCcccc--HHHHHHHHHH
Confidence 000001111 11 011000 11122222111 134 499999998854 4599999999
Q ss_pred HHhcCCC-----CceEEEEecCCCCCCC
Q 004368 703 LREMKTD-----DNILLFKCELGAGHFS 725 (758)
Q Consensus 703 L~~~~~~-----~~~~~~~~~~~~gH~~ 725 (758)
+...+.. .+..+ ++++.|..
T Consensus 326 ~~~~~~~~~~~~~nv~~---~~~G~Hi~ 350 (374)
T PF10340_consen 326 LNDVKPNKFSNSNNVYI---DEGGIHIG 350 (374)
T ss_pred HhhcCccccCCcceEEE---ecCCcccc
Confidence 9976533 23333 34888865
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.1e-05 Score=75.77 Aligned_cols=193 Identities=14% Similarity=0.106 Sum_probs=114.1
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCC-eEEEEEeCCCCCCceEEEE
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~ 266 (758)
..+....+|+||.+. ++.. ....+++||+++|+..+. +.+ ..-++++|+|+ +|.--+.|. .+.++
T Consensus 64 H~v~dv~~s~dg~~a-lS~s----wD~~lrlWDl~~g~~t~~-f~GH~~dVlsva~s~dn~qivSGSrDk-----Tiklw 132 (315)
T KOG0279|consen 64 HFVSDVVLSSDGNFA-LSAS----WDGTLRLWDLATGESTRR-FVGHTKDVLSVAFSTDNRQIVSGSRDK-----TIKLW 132 (315)
T ss_pred eEecceEEccCCceE-Eecc----ccceEEEEEecCCcEEEE-EEecCCceEEEEecCCCceeecCCCcc-----eeeee
Confidence 467889999999984 3333 345899999999987653 222 25669999999 664333332 24444
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCC-cEEEEEecCCcceEEEEEeCCCCCceEEeeccccce-ee-EEeecCCEE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESK-KFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DT-AASHRGNHF 343 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg-~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-~~-~~s~dg~~l 343 (758)
++-+. -...+.++....+...+.|+|.. ..++++.....+ |-+.|+++-+ ++.-..+..+. .+ .+||||..+
T Consensus 133 nt~g~--ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt--vKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 133 NTLGV--CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT--VKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLC 207 (315)
T ss_pred eeccc--EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce--EEEEccCCcc-hhhccccccccEEEEEECCCCCEE
Confidence 44332 12223333224455668899986 344444433333 4455776654 32222222222 22 399999855
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 344 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+. + ...++++..|++.. .. +..-+....+.++.+.+++.++....+.. +.||+++.
T Consensus 208 as----G-gkdg~~~LwdL~~~--k~-lysl~a~~~v~sl~fspnrywL~~at~~s--IkIwdl~~ 263 (315)
T KOG0279|consen 208 AS----G-GKDGEAMLWDLNEG--KN-LYSLEAFDIVNSLCFSPNRYWLCAATATS--IKIWDLES 263 (315)
T ss_pred ec----C-CCCceEEEEEccCC--ce-eEeccCCCeEeeEEecCCceeEeeccCCc--eEEEeccc
Confidence 43 2 44678999999762 22 33333344567788888877766654433 78999884
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.6e-07 Score=88.18 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=87.3
Q ss_pred eEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChH
Q 004368 497 TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF 576 (758)
Q Consensus 497 ~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~ 576 (758)
-..|+.|+.|... |.+|+|++.||-.-. ...|+...+.++++||+|+.++.-..-. ..+..++
T Consensus 31 pPkpLlI~tP~~~----G~yPVilF~HG~~l~--ns~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~~~Ei 93 (307)
T PF07224_consen 31 PPKPLLIVTPSEA----GTYPVILFLHGFNLY--NSFYSQLLAHIASHGFIVVAPQLYTLFP-----------PDGQDEI 93 (307)
T ss_pred CCCCeEEecCCcC----CCccEEEEeechhhh--hHHHHHHHHHHhhcCeEEEechhhcccC-----------CCchHHH
Confidence 3577888877664 889999999994322 3336666678899999999999753211 2344567
Q ss_pred hHHHHHHHHHHHc--------CCCCCCcEEEEEeChhHHHHHHHHhhC-CC-ceeEEEEcCCccc
Q 004368 577 TDFIACAEYLIKN--------CYCTKEKLCIEGRSAGGLLIGAVLNMR-PD-LFKAAVAAVPFVD 631 (758)
Q Consensus 577 ~D~~~~~~~l~~~--------~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~-~f~a~v~~~~~~d 631 (758)
++..++++||-+. --.+.++++++|||.||-.+.+++..+ .+ .|.|.|..-|+.-
T Consensus 94 ~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G 158 (307)
T PF07224_consen 94 KSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAG 158 (307)
T ss_pred HHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCC
Confidence 8888899999653 125779999999999999999888866 33 3788887777643
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.8e-06 Score=92.93 Aligned_cols=159 Identities=12% Similarity=0.049 Sum_probs=99.4
Q ss_pred EEeeEEECCCCCEEEEEEeC---CCCeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCC-------CCCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDT---KGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDE-------ILRP 260 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~---~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~-------~~~~ 260 (758)
.+.++++||||+++||.... ..+...+||+.+. +++..+.+.....+.+.|+||| .++|+.... ....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 46789999999999999842 2234679999997 4444444333336679999998 788876421 1122
Q ss_pred ceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEE---EeCCCCC----ceEEeeccccc--
Q 004368 261 DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFY---LDVSKPE----ELRVLTPRVVG-- 331 (758)
Q Consensus 261 ~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~---~d~~~~~----~~~~l~~~~~~-- 331 (758)
.++|...+..+.... -+ +. -..++.|||||++|++... .+||+ +..+++. .++.+.....+
T Consensus 430 gql~~~~vd~ge~~~--~~---~g-~Issl~wSpDG~RiA~i~~----g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 430 GQLARTPVDASAVAS--RV---PG-PISELQLSRDGVRAAMIIG----GKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred ceEEEEeccCchhhh--cc---CC-CcCeEEECCCCCEEEEEEC----CEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 357766665543211 11 11 1336789999999999773 36777 5555554 12334443333
Q ss_pred eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCC
Q 004368 332 VDTAASHRGNHFFITRRSDELFNSELLACPVDNT 365 (758)
Q Consensus 332 ~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~ 365 (758)
....|..++. |++.+.. .+..++.+++++.
T Consensus 500 ~~l~W~~~~~-L~V~~~~---~~~~v~~v~vDG~ 529 (591)
T PRK13616 500 VSLDWRTGDS-LVVGRSD---PEHPVWYVNLDGS 529 (591)
T ss_pred ccceEecCCE-EEEEecC---CCCceEEEecCCc
Confidence 2334887776 6666553 2456889998863
|
|
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.5e-07 Score=93.85 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=77.7
Q ss_pred CCCCCEEEEecCCCccCCCCCCCh-HHHHHHH-cCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcC
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNS-SRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 590 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 590 (758)
+...|++|++||..+.. ...|.. ....++. .++.|+++|++++..... ..+. ..-...-+++...+++|.++.
T Consensus 33 ~~~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y--~~a~--~~~~~v~~~la~~l~~L~~~~ 107 (275)
T cd00707 33 NPSRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANPNY--PQAV--NNTRVVGAELAKFLDFLVDNT 107 (275)
T ss_pred CCCCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECccccccCh--HHHH--HhHHHHHHHHHHHHHHHHHhc
Confidence 34578999999954433 223333 2334555 589999999998743221 1110 011112357777888888875
Q ss_pred CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 591 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 591 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
..+.++|.++|+|+||.+++.++.+.|++++.+++..|.
T Consensus 108 g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa 146 (275)
T cd00707 108 GLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPA 146 (275)
T ss_pred CCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCC
Confidence 567899999999999999999999999999999887664
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00029 Score=71.93 Aligned_cols=259 Identities=16% Similarity=0.152 Sum_probs=139.7
Q ss_pred EeeEEECCCCCEEEEEEeCCCC-eEEEEEEEECCCCceeec---cccCcc-eeEEEecCCeEEEEEeCCCCCCceEEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGD-EIYTVYVIDIETGTPVGK---PLVGVT-ASVEWAGNEALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~-e~~~l~v~dl~~g~~~~~---~~~~~~-~~~~wspDg~l~y~~~~~~~~~~~v~~~~ 267 (758)
...+.|+|++++| |+....|. ....-|-+|-++|+...+ .+.+.. ..++.++||+++|++.-... .|-...
T Consensus 42 ptyl~~~~~~~~L-Y~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g---~v~v~p 117 (346)
T COG2706 42 PTYLAVNPDQRHL-YVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSG---SVSVYP 117 (346)
T ss_pred CceEEECCCCCEE-EEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCc---eEEEEE
Confidence 4567899999987 44443322 134556666666776533 333332 45788999977777653221 243444
Q ss_pred cCCCCCC----cEEEeeec--C----CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEE-----eeccccce
Q 004368 268 LEADQSN----DICLYHEK--D----DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV-----LTPRVVGV 332 (758)
Q Consensus 268 l~~~~~~----~~~v~~~~--~----~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~-----l~~~~~~~ 332 (758)
+.....- +.....+. + ....-...++|||++|+...- +.-+|++++++.+. +.. +.++..-.
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~~y~~~dg~-L~~~~~~~v~~G~GPR 194 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIFLYDLDDGK-LTPADPAEVKPGAGPR 194 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEEEEEcccCc-cccccccccCCCCCcc
Confidence 4332110 01111111 0 011123458999999886543 44567777777765 222 22222223
Q ss_pred eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCC-Cccee-----eecCCC--CceeeeEEEeCCEEEEEEEeCCeeEEEE
Q 004368 333 DTAASHRGNHFFITRRSDELFNSELLACPVDNT-SETTV-----LIPHRE--SVKLQDIQLFIDHLAVYEREGGLQKITT 404 (758)
Q Consensus 333 ~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~-~~~~~-----l~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~l~v 404 (758)
...|.|+|+..|++...+ ..|.++..+.. +..+. .+|.+. .....++.+..+.-+++.++.|...|.+
T Consensus 195 Hi~FHpn~k~aY~v~EL~----stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 195 HIVFHPNGKYAYLVNELN----STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred eEEEcCCCcEEEEEeccC----CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 445899999888877664 34444433321 22211 333332 2234456666666666677778888999
Q ss_pred EEcCCCCCccccccCCceeec-cCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEE
Q 004368 405 YRLPAVGEPLKSLQGGKSVEF-IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 469 (758)
Q Consensus 405 ~~l~~~g~~~~~l~~~~~i~~-p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~ 469 (758)
+.++..++.+.. +.. +..+-.-..++.++.++.++..-..-.+ -.+|..|.++|+..+
T Consensus 271 f~V~~~~g~L~~------~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~~ 329 (346)
T COG2706 271 FSVDPDGGKLEL------VGITPTEGQFPRDFNINPSGRFLIAANQKSDN-ITVFERDKETGRLTL 329 (346)
T ss_pred EEEcCCCCEEEE------EEEeccCCcCCccceeCCCCCEEEEEccCCCc-EEEEEEcCCCceEEe
Confidence 999876653311 111 1111111346666677666555443333 688999999998443
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.5e-06 Score=103.37 Aligned_cols=105 Identities=14% Similarity=0.079 Sum_probs=64.1
Q ss_pred CCCEEEEecCCCccCCCCCCCh---HHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHH----HHHHHHHH
Q 004368 515 SDPLLLYGYGSYEICNDPAFNS---SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF----IACAEYLI 587 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~----~~~~~~l~ 587 (758)
..|.||++||.......+...+ ....|+++||.|+++|.. . .+.. . +. ...++.|. .++++.+.
T Consensus 66 ~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~G-~--~~~~--~-~~---~~~~l~~~i~~l~~~l~~v~ 136 (994)
T PRK07868 66 VGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDFG-S--PDKV--E-GG---MERNLADHVVALSEAIDTVK 136 (994)
T ss_pred CCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcCC-C--CChh--H-cC---ccCCHHHHHHHHHHHHHHHH
Confidence 3478899999655544433322 256788999999999962 1 1111 0 00 01223333 33444433
Q ss_pred HcCCCCCCcEEEEEeChhHHHHHHHHhhC-CCceeEEEEcCCccc
Q 004368 588 KNCYCTKEKLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPFVD 631 (758)
Q Consensus 588 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~~~d 631 (758)
+.. -+++.++|+|+||.++..+++.+ +++++.+|+.+..+|
T Consensus 137 ~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d 178 (994)
T PRK07868 137 DVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVD 178 (994)
T ss_pred Hhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccc
Confidence 333 25799999999999998777644 568888877555544
|
|
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.4e-07 Score=85.12 Aligned_cols=209 Identities=15% Similarity=0.106 Sum_probs=116.3
Q ss_pred EEEEecCCCccCCCCCCChHHHHHHHc-CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCc
Q 004368 518 LLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 596 (758)
Q Consensus 518 ~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 596 (758)
.||.+-|..|+... .|.+....+-.. -+.++..|.||-|.+-..- ++..-+-..+|..+|++.+.+. +-++
T Consensus 44 ~iLlipGalGs~~t-Df~pql~~l~k~l~~TivawDPpGYG~SrPP~----Rkf~~~ff~~Da~~avdLM~aL---k~~~ 115 (277)
T KOG2984|consen 44 YILLIPGALGSYKT-DFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPE----RKFEVQFFMKDAEYAVDLMEAL---KLEP 115 (277)
T ss_pred eeEecccccccccc-cCCHHHHhcCCCCceEEEEECCCCCCCCCCCc----ccchHHHHHHhHHHHHHHHHHh---CCCC
Confidence 45555676665443 476666555443 3899999999866432110 1111122347888888888775 4589
Q ss_pred EEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc--cchhhccCCCCCCCChhhhhc---------cCCCCCHHHHHH---
Q 004368 597 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF--VDVLTTMLDPTIPLTTAEWEE---------WGDPWKEEFYFY--- 662 (758)
Q Consensus 597 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~--~d~~~~~~~~~~~~~~~~~~e---------~g~p~~~~~~~~--- 662 (758)
+.|+|+|-||..++.+++++++.+.-.|....- ++-...|....+.- ...|.+ ||.-.-+..++.
T Consensus 116 fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRd-v~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD 194 (277)
T KOG2984|consen 116 FSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRD-VNKWSARGRQPYEDHYGPETFRTQWAAWVD 194 (277)
T ss_pred eeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHH-HhhhhhhhcchHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999877655544332 22111111111100 001111 111000111110
Q ss_pred -HHhc-C------cccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHH
Q 004368 663 -MKSY-S------PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLR 734 (758)
Q Consensus 663 -l~~~-s------p~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~ 734 (758)
+.++ | --.-+.++++| +||+||..|+.|+-.+.--+ ..+. .-.++.+++ .++|.+.-...+.++
T Consensus 195 ~v~qf~~~~dG~fCr~~lp~vkcP-tli~hG~kDp~~~~~hv~fi-~~~~---~~a~~~~~p---eGkHn~hLrya~eFn 266 (277)
T KOG2984|consen 195 VVDQFHSFCDGRFCRLVLPQVKCP-TLIMHGGKDPFCGDPHVCFI-PVLK---SLAKVEIHP---EGKHNFHLRYAKEFN 266 (277)
T ss_pred HHHHHhhcCCCchHhhhcccccCC-eeEeeCCcCCCCCCCCccch-hhhc---ccceEEEcc---CCCcceeeechHHHH
Confidence 0100 0 01335677998 99999999999997776433 3332 223445555 888976544444454
Q ss_pred HHHHHHHHHHH
Q 004368 735 EAAFTYTFLMR 745 (758)
Q Consensus 735 ~~~~~~~fl~~ 745 (758)
.. ..+||.+
T Consensus 267 kl--v~dFl~~ 275 (277)
T KOG2984|consen 267 KL--VLDFLKS 275 (277)
T ss_pred HH--HHHHHhc
Confidence 44 5678764
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-06 Score=81.88 Aligned_cols=162 Identities=19% Similarity=0.249 Sum_probs=89.3
Q ss_pred EEEecCCCccCCCCCCChHHH-HHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcE
Q 004368 519 LLYGYGSYEICNDPAFNSSRL-SLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKL 597 (758)
Q Consensus 519 vl~~hGg~~~~~~~~~~~~~~-~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i 597 (758)
|+++|| ++.+....|..... .+-+. +.|-.++. .. -|+..-++.|.++--...+.+
T Consensus 1 v~IvhG-~~~s~~~HW~~wl~~~l~~~-~~V~~~~~------------------~~---P~~~~W~~~l~~~i~~~~~~~ 57 (171)
T PF06821_consen 1 VLIVHG-YGGSPPDHWQPWLERQLENS-VRVEQPDW------------------DN---PDLDEWVQALDQAIDAIDEPT 57 (171)
T ss_dssp EEEE---TTSSTTTSTHHHHHHHHTTS-EEEEEC--------------------TS-----HHHHHHHHHHCCHC-TTTE
T ss_pred CEEeCC-CCCCCccHHHHHHHHhCCCC-eEEecccc------------------CC---CCHHHHHHHHHHHHhhcCCCe
Confidence 466777 44444455544443 33333 66655543 01 133334444444311224569
Q ss_pred EEEEeChhHHHHHHHH-hhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCC
Q 004368 598 CIEGRSAGGLLIGAVL-NMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQN 676 (758)
Q Consensus 598 ~i~G~S~GG~l~~~~~-~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~ 676 (758)
.++|||.|+.+++..+ .+....++++++.+|+..-.... ..+ ....+. +... ....
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~---~~~----~~~~f~---------------~~p~-~~l~ 114 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPEP---FPP----ELDGFT---------------PLPR-DPLP 114 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHHC---CTC----GGCCCT---------------TSHC-CHHH
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccccc---hhh----hccccc---------------cCcc-cccC
Confidence 9999999999999998 77778999999999983210110 010 001111 1111 1123
Q ss_pred CCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHH
Q 004368 677 YPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLRE 735 (758)
Q Consensus 677 ~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~ 735 (758)
.| .+++.++||+.||+..+.+++++|.+ +++.++ ++||+........+.+
T Consensus 115 ~~-~~viaS~nDp~vp~~~a~~~A~~l~a-----~~~~~~---~~GHf~~~~G~~~~p~ 164 (171)
T PF06821_consen 115 FP-SIVIASDNDPYVPFERAQRLAQRLGA-----ELIILG---GGGHFNAASGFGPWPE 164 (171)
T ss_dssp CC-EEEEEETTBSSS-HHHHHHHHHHHT------EEEEET---S-TTSSGGGTHSS-HH
T ss_pred CC-eEEEEcCCCCccCHHHHHHHHHHcCC-----CeEECC---CCCCcccccCCCchHH
Confidence 55 47788999999999999999999854 456665 9999876554444443
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.8e-06 Score=85.21 Aligned_cols=195 Identities=13% Similarity=0.133 Sum_probs=108.3
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc--cCcceeEEEecCC-eEEEEEeCCCCCCceEEEE
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~--~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~ 266 (758)
..+..+.||||.++|.-- |.+ ..+++||+.+|..+.. .- ....++.+|-||| +++-.+.+ ..++..
T Consensus 270 ~~V~yi~wSPDdryLlaC----g~~-e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d-----r~i~~w 339 (519)
T KOG0293|consen 270 QPVSYIMWSPDDRYLLAC----GFD-EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD-----RTIIMW 339 (519)
T ss_pred CceEEEEECCCCCeEEec----Cch-HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC-----CcEEEe
Confidence 367789999999988521 221 2399999999987754 21 1235668999999 65433322 246666
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce-eeEEeecCCEEEE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFI 345 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~ 345 (758)
++.+.. .--++.....-..+++.|+||++++.... ..++.+++.++.. -+.+......+ ...+|.||+. +
T Consensus 340 dlDgn~---~~~W~gvr~~~v~dlait~Dgk~vl~v~~---d~~i~l~~~e~~~-dr~lise~~~its~~iS~d~k~--~ 410 (519)
T KOG0293|consen 340 DLDGNI---LGNWEGVRDPKVHDLAITYDGKYVLLVTV---DKKIRLYNREARV-DRGLISEEQPITSFSISKDGKL--A 410 (519)
T ss_pred cCCcch---hhcccccccceeEEEEEcCCCcEEEEEec---ccceeeechhhhh-hhccccccCceeEEEEcCCCcE--E
Confidence 665432 11222222223447889999999987653 3457777776643 22133333333 3347888773 3
Q ss_pred EEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC--CEEEEEEEeCCeeEEEEEEcCC
Q 004368 346 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+.|.. ...+...|++.....+....+.....+-.-++.+ +.++...++++ +++||+...
T Consensus 411 LvnL~---~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~--kvyIWhr~s 471 (519)
T KOG0293|consen 411 LVNLQ---DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS--KVYIWHRIS 471 (519)
T ss_pred EEEcc---cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCc--eEEEEEccC
Confidence 34443 2457777776421111122222222221222222 35566666665 588888763
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00028 Score=74.82 Aligned_cols=202 Identities=13% Similarity=0.139 Sum_probs=114.9
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCce-eec---cccCcceeEEEecCC-eEEEEEeCCCC-------
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGK---PLVGVTASVEWAGNE-ALVYITMDEIL------- 258 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~-~~~---~~~~~~~~~~wspDg-~l~y~~~~~~~------- 258 (758)
+.+.-.++||.|-||| .|+...+|+|||....+. +.. .+.+.+..+.|+.|| +|+.+......
T Consensus 60 ~~vtVAkySPsG~yiA-----SGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 60 HQVTVAKYSPSGFYIA-----SGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred ceeEEEEeCCCceEEe-----ecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 3455679999999988 465566899999876443 222 234446668999999 88877543211
Q ss_pred ---------------------CCceEEEEEcCCCCCCcEEEeeecC----------CceeeEEEEcCCCcEEEEEecCCc
Q 004368 259 ---------------------RPDKAWLHKLEADQSNDICLYHEKD----------DIYSLGLQASESKKFLFIASESKI 307 (758)
Q Consensus 259 ---------------------~~~~v~~~~l~~~~~~~~~v~~~~~----------~~~~~~~~~S~Dg~~l~~~s~~~~ 307 (758)
++.+-|+.-.+++ ..-+.+|+.+. ..|.-.+.+||||.+++-...+
T Consensus 135 DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sd-Dn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD-- 211 (603)
T KOG0318|consen 135 DSGNSVGEITGHSRRINSVDFKPSRPFRIATGSD-DNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD-- 211 (603)
T ss_pred cCCCccceeeccceeEeeeeccCCCceEEEeccC-CCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC--
Confidence 1112222222221 11233444332 2234468899999876543332
Q ss_pred ceEEEEEeCCCCCceEEeec---ccccee-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeE
Q 004368 308 TRFVFYLDVSKPEELRVLTP---RVVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDI 383 (758)
Q Consensus 308 ~~~l~~~d~~~~~~~~~l~~---~~~~~~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~ 383 (758)
..++++|-.+++..-.+-. ...++. ..|+||+++++-.+.+. ..+|+-+.... -..+|.....-+....+.
T Consensus 212 -gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk---t~KIWdVs~~s-lv~t~~~~~~v~dqqvG~ 286 (603)
T KOG0318|consen 212 -GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK---TIKIWDVSTNS-LVSTWPMGSTVEDQQVGC 286 (603)
T ss_pred -ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc---eEEEEEeeccc-eEEEeecCCchhceEEEE
Confidence 3578999888873334431 222232 24999999988776543 35565444322 124455544433445577
Q ss_pred EEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 384 QLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
-|.+++|+.+.. +|. +..++.+
T Consensus 287 lWqkd~lItVSl-~G~--in~ln~~ 308 (603)
T KOG0318|consen 287 LWQKDHLITVSL-SGT--INYLNPS 308 (603)
T ss_pred EEeCCeEEEEEc-CcE--EEEeccc
Confidence 788888875554 343 4455544
|
|
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-06 Score=90.67 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=102.3
Q ss_pred CCCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCC----hHHHHHHHcCcEEEEEecCC
Q 004368 480 DTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN----SSRLSLLDRGFIFAIAQIRG 555 (758)
Q Consensus 480 ~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~----~~~~~l~~~G~~v~~~~~RG 555 (758)
...+|.+|+..+.+.||.-+.. --.|... +++|+|++.||-..++..+--+ ...-.|+++||-|-.-|.||
T Consensus 42 ~~~gy~~E~h~V~T~DgYiL~l-hRIp~~~----~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG 116 (403)
T KOG2624|consen 42 EKYGYPVEEHEVTTEDGYILTL-HRIPRGK----KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG 116 (403)
T ss_pred HHcCCceEEEEEEccCCeEEEE-eeecCCC----CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC
Confidence 4457888999999999983332 2334431 7899999999976666554322 23347788999999999999
Q ss_pred CCCCchhHHhccc--------ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCC---ceeEEE
Q 004368 556 GGELGRQWYENGK--------FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAV 624 (758)
Q Consensus 556 ~g~~G~~~~~~~~--------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v 624 (758)
..|.++-..... ..+..-...|+.|.++++.+. +..+++..+|||.|+.....++..+|+ +++.++
T Consensus 117 -n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~ 193 (403)
T KOG2624|consen 117 -NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFI 193 (403)
T ss_pred -cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchhhhhhheee
Confidence 555543221111 111223457999999998775 467999999999999999988888876 577788
Q ss_pred EcCCcc
Q 004368 625 AAVPFV 630 (758)
Q Consensus 625 ~~~~~~ 630 (758)
+.+|++
T Consensus 194 aLAP~~ 199 (403)
T KOG2624|consen 194 ALAPAA 199 (403)
T ss_pred eecchh
Confidence 888765
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-06 Score=80.89 Aligned_cols=216 Identities=19% Similarity=0.178 Sum_probs=121.5
Q ss_pred EEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccc
Q 004368 489 KWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGK 568 (758)
Q Consensus 489 ~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~ 568 (758)
..++..||..+++. .+|.+. +.+-.+.+-|+++.... .|...++..+.+||.|+..||||.|+.-..-.....
T Consensus 8 ~~l~~~DG~~l~~~-~~pA~~-----~~~g~~~va~a~Gv~~~-fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~ 80 (281)
T COG4757 8 AHLPAPDGYSLPGQ-RFPADG-----KASGRLVVAGATGVGQY-FYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQ 80 (281)
T ss_pred cccccCCCccCccc-cccCCC-----CCCCcEEecccCCcchh-HhHHHHHHhhccCceEEEEecccccCCCccccccCc
Confidence 55778899999987 445442 34544555666665332 244455666778999999999999875332111001
Q ss_pred ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCcee-EEEEcCCccchhhccCC---------
Q 004368 569 FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK-AAVAAVPFVDVLTTMLD--------- 638 (758)
Q Consensus 569 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~-a~v~~~~~~d~~~~~~~--------- 638 (758)
.....-...|+.++++++.+.- -.-.+..+|||+||.+.+.+.+ +| +++ ++|..++ .-|-..|..
T Consensus 81 ~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~-~~-k~~a~~vfG~g-agwsg~m~~~~~l~~~~l 155 (281)
T COG4757 81 WRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQ-HP-KYAAFAVFGSG-AGWSGWMGLRERLGAVLL 155 (281)
T ss_pred cchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccccc-Cc-ccceeeEeccc-cccccchhhhhcccceee
Confidence 1112234579999999998742 2256889999999998776655 45 333 3332222 111111100
Q ss_pred -----------------------CCCCCC-hhhhhcc-CCC----CCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCC
Q 004368 639 -----------------------PTIPLT-TAEWEEW-GDP----WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDP 689 (758)
Q Consensus 639 -----------------------~~~~~~-~~~~~e~-g~p----~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~ 689 (758)
+++|.+ ..+|..| -.| .+|... .+ .+-.+++++| +.++...+|+
T Consensus 156 ~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~-~~-----~q~yaaVrtP-i~~~~~~DD~ 228 (281)
T COG4757 156 WNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMR-NY-----RQVYAAVRTP-ITFSRALDDP 228 (281)
T ss_pred ccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHh-HH-----HHHHHHhcCc-eeeeccCCCC
Confidence 011111 0111111 011 111111 00 1123456888 9999999999
Q ss_pred CCCChHHHHHHHHHHhcCCCCceEEEEecC-CCCCCC
Q 004368 690 RVMYSEPAKFVAKLREMKTDDNILLFKCEL-GAGHFS 725 (758)
Q Consensus 690 ~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~-~~gH~~ 725 (758)
-+|+....+|+...+++. .+...++..+ .-||..
T Consensus 229 w~P~As~d~f~~~y~nAp--l~~~~~~~~~~~lGH~g 263 (281)
T COG4757 229 WAPPASRDAFASFYRNAP--LEMRDLPRAEGPLGHMG 263 (281)
T ss_pred cCCHHHHHHHHHhhhcCc--ccceecCcccCcccchh
Confidence 999998888888777654 3444454322 258854
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00021 Score=76.59 Aligned_cols=251 Identities=13% Similarity=0.068 Sum_probs=122.1
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECC-CCceeec---cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE-TGTPVGK---PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~-~g~~~~~---~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
..+.+||||++|+.+.... ..|.+++++ +|+.... ...+....++++|||+++|++... ...+..+++.
T Consensus 38 ~~l~~spd~~~lyv~~~~~----~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~---~~~v~v~~~~ 110 (330)
T PRK11028 38 QPMVISPDKRHLYVGVRPE----FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN---ANCVSVSPLD 110 (330)
T ss_pred ccEEECCCCCEEEEEECCC----CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC---CCeEEEEEEC
Confidence 4568999999986654322 346667775 4544321 222234568999999766766532 2346666665
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceE-------EeeccccceeeEEeecCCE
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR-------VLTPRVVGVDTAASHRGNH 342 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~-------~l~~~~~~~~~~~s~dg~~ 342 (758)
++......+........-..+.++|||+++++.... ...|+++|+++...+. .+.....-....++|||++
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~--~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK--EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY 188 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC--CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE
Confidence 332111111111111111245689999998875543 3457777775422121 1111111122358999998
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCC-Cccee---e--ecCCC--Cceeee--EEEeCCEEEEEEEeCCeeEEEEEEcCCCCC
Q 004368 343 FFITRRSDELFNSELLACPVDNT-SETTV---L--IPHRE--SVKLQD--IQLFIDHLAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~-~~~~~---l--~~~~~--~~~~~~--~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
+|.....+ ..|..++++.. +..+. + ++... .....+ ++++++++++. ..+...+.+++++.++.
T Consensus 189 lyv~~~~~----~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~--~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 189 AYCVNELN----SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC--DRTASLISVFSVSEDGS 262 (330)
T ss_pred EEEEecCC----CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe--cCCCCeEEEEEEeCCCC
Confidence 87764433 35555555421 11111 1 12110 011112 34555566654 23344688888875443
Q ss_pred ccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 413 PLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 413 ~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
..+.+ ..+... .....+..+++++.++++-. ...--.+|..|..++.
T Consensus 263 ~~~~~---~~~~~~---~~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~~~~g~ 309 (330)
T PRK11028 263 VLSFE---GHQPTE---TQPRGFNIDHSGKYLIAAGQ-KSHHISVYEIDGETGL 309 (330)
T ss_pred eEEEe---EEEecc---ccCCceEECCCCCEEEEEEc-cCCcEEEEEEcCCCCc
Confidence 22110 111110 01123456677777755432 2222345555555555
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.8e-06 Score=79.71 Aligned_cols=188 Identities=19% Similarity=0.199 Sum_probs=109.6
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecC------CCCCCchhHHhcccccCC-cChHhHHHH---HHHH
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIR------GGGELGRQWYENGKFLKK-KNTFTDFIA---CAEY 585 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~R------G~g~~G~~~~~~~~~~~~-~~~~~D~~~---~~~~ 585 (758)
.-+||+.||--.+. .++......+--+..-.++|+.+ -.|..+..|.+....... ..+-..+.. .+..
T Consensus 3 ~atIi~LHglGDsg--~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~ 80 (206)
T KOG2112|consen 3 TATIIFLHGLGDSG--SGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIAN 80 (206)
T ss_pred eEEEEEEecCCCCC--ccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHH
Confidence 35799999943222 22322222333345556666432 233344556654432211 112222222 3333
Q ss_pred HHHc---CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHH
Q 004368 586 LIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFY 662 (758)
Q Consensus 586 l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~ 662 (758)
|+++ ..++++||++.|.|+||.+++.++..+|-...+++...++.--... +.|..
T Consensus 81 Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~----------------~~~~~------ 138 (206)
T KOG2112|consen 81 LIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASI----------------GLPGW------ 138 (206)
T ss_pred HHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchh----------------hccCC------
Confidence 3332 3468899999999999999999999886555555555554321110 00100
Q ss_pred HHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHH
Q 004368 663 MKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTF 742 (758)
Q Consensus 663 l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~f 742 (758)
. | .. +++|++..||+.|+.||..-..+....|+..+.. +.++..++-+|... -++..+...|
T Consensus 139 -~---~---~~--~~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~---~~f~~y~g~~h~~~------~~e~~~~~~~ 200 (206)
T KOG2112|consen 139 -L---P---GV--NYTPILLCHGTADPLVPFRFGEKSAQFLKSLGVR---VTFKPYPGLGHSTS------PQELDDLKSW 200 (206)
T ss_pred -c---c---cc--CcchhheecccCCceeehHHHHHHHHHHHHcCCc---eeeeecCCcccccc------HHHHHHHHHH
Confidence 0 0 00 1345999999999999999999999999999876 45666669999642 2234445678
Q ss_pred HHH
Q 004368 743 LMR 745 (758)
Q Consensus 743 l~~ 745 (758)
+.+
T Consensus 201 ~~~ 203 (206)
T KOG2112|consen 201 IKT 203 (206)
T ss_pred HHH
Confidence 766
|
|
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-06 Score=85.26 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=79.4
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHc-CcEEEEEecCCCCCCchhHHh
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYE 565 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G~~~~~ 565 (758)
+.+.++..|+ ++..++-.|. ...-|++++.|||.-+ .-+|...+..+.++ -..++++|.||+|+.-.+-..
T Consensus 51 edv~i~~~~~-t~n~Y~t~~~-----~t~gpil~l~HG~G~S--~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~ 122 (343)
T KOG2564|consen 51 EDVSIDGSDL-TFNVYLTLPS-----ATEGPILLLLHGGGSS--ALSFAIFASELKSKIRCRCLALDLRGHGETKVENED 122 (343)
T ss_pred cccccCCCcc-eEEEEEecCC-----CCCccEEEEeecCccc--chhHHHHHHHHHhhcceeEEEeeccccCccccCChh
Confidence 4555655555 4666554443 2457999999996433 34477777777764 566799999999986433222
Q ss_pred cccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC
Q 004368 566 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR 616 (758)
Q Consensus 566 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 616 (758)
+ .....-..||.+.++++-.. .+.+|.++||||||.++...+...
T Consensus 123 d---lS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k 167 (343)
T KOG2564|consen 123 D---LSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASK 167 (343)
T ss_pred h---cCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhh
Confidence 1 23334468899888888654 457899999999999998777653
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00036 Score=77.33 Aligned_cols=248 Identities=17% Similarity=0.152 Sum_probs=145.2
Q ss_pred EEeCcEEEEEEecCCCeeEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecccccCCCCeEEEeeEEECCCCCEEEE
Q 004368 128 FRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAY 207 (758)
Q Consensus 128 ~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy 207 (758)
++.|.++-|+-..+|++...++.+...+ + +.+-|. +.. .....+.|++||+.+.|
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~t------------------g-~~l~d~--i~~----~~~~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLET------------------G-KFLPDG--IEN----PKFSSVSWSDDGKGFFY 186 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTT------------------T-EEEEEE--EEE----EESEEEEECTTSSEEEE
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCC------------------C-cCcCCc--ccc----cccceEEEeCCCCEEEE
Confidence 3568888889888888887777665532 2 333332 211 11223899999999999
Q ss_pred EEeCCCCe------EEEEEEEECCCCceeec-----cccCc-ceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCC---
Q 004368 208 AEDTKGDE------IYTVYVIDIETGTPVGK-----PLVGV-TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD--- 271 (758)
Q Consensus 208 ~~~~~G~e------~~~l~v~dl~~g~~~~~-----~~~~~-~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~--- 271 (758)
+....... ..+|+.+.+.++..... ..... .-++.+|+|+ .++........ ...+|+.++..+
T Consensus 187 ~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~ 265 (414)
T PF02897_consen 187 TRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSP 265 (414)
T ss_dssp EECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTS
T ss_pred EEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCC
Confidence 98766544 78999999988754311 11222 3457889999 45444444333 468999999874
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecC-CcceEEEEEeCCCCC--ceE-Eeeccccceee-EEeecCCEEEEE
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASES-KITRFVFYLDVSKPE--ELR-VLTPRVVGVDT-AASHRGNHFFIT 346 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~-~~~~~l~~~d~~~~~--~~~-~l~~~~~~~~~-~~s~dg~~l~~~ 346 (758)
......+....+.... .+... |..+++.++. .....|+.+++++.. .++ .+.+...+... .++..+++|++.
T Consensus 266 ~~~~~~l~~~~~~~~~-~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~ 342 (414)
T PF02897_consen 266 DAKPKLLSPREDGVEY-YVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLS 342 (414)
T ss_dssp S-SEEEEEESSSS-EE-EEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEE
T ss_pred cCCcEEEeCCCCceEE-EEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEE
Confidence 2334445443333322 22222 5556666654 445789999998875 244 55555444333 377889999998
Q ss_pred EcCCCCCCcEEEEEeCC-CCCcceeeecCCCCceeeeEE--EeCCEEEEEEEeCCee-EEEEEEcC
Q 004368 347 RRSDELFNSELLACPVD-NTSETTVLIPHRESVKLQDIQ--LFIDHLAVYEREGGLQ-KITTYRLP 408 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~-~~~~~~~l~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~-~l~v~~l~ 408 (758)
.+.++ ..+|.++++. + .....++......+.++. ...+.+.+.+..-..+ .++.|++.
T Consensus 343 ~~~~~--~~~l~v~~~~~~--~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~ 404 (414)
T PF02897_consen 343 YRENG--SSRLRVYDLDDG--KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLA 404 (414)
T ss_dssp EEETT--EEEEEEEETT-T--EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETT
T ss_pred EEECC--ccEEEEEECCCC--cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 88863 5789999987 3 222222222222333443 3456777777665544 45556655
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-05 Score=70.40 Aligned_cols=184 Identities=19% Similarity=0.238 Sum_probs=104.3
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCC--CCchhHHhcccccCCcChH-hHHHHHHHHHHHcCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGG--ELGRQWYENGKFLKKKNTF-TDFIACAEYLIKNCYC 592 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g--~~G~~~~~~~~~~~~~~~~-~D~~~~~~~l~~~~~~ 592 (758)
.-+||+.||.-....++.....+..|+.+|+.|+-+++.--- -+|.. +.-....+. ...+.++..|....
T Consensus 14 ~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~r-----kPp~~~~t~~~~~~~~~aql~~~l-- 86 (213)
T COG3571 14 PVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRR-----KPPPGSGTLNPEYIVAIAQLRAGL-- 86 (213)
T ss_pred CEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCC-----CCcCccccCCHHHHHHHHHHHhcc--
Confidence 347788999766666665666677899999999999874110 11100 001111122 34455566666543
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCccccc
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV 672 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i 672 (758)
+..++++-|.||||-++..++..----+.+.+|.. .|+. --|.|+. ++ ..++
T Consensus 87 ~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clg-------------YPfh-----ppGKPe~------~R----t~HL 138 (213)
T COG3571 87 AEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLG-------------YPFH-----PPGKPEQ------LR----TEHL 138 (213)
T ss_pred cCCceeeccccccchHHHHHHHhhcCCcceEEEec-------------CccC-----CCCCccc------ch----hhhc
Confidence 56789999999999988777664211122333211 1111 1133321 11 2345
Q ss_pred CCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCC-------ChHHHHHHHHHHHHHH
Q 004368 673 KAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS-------GRFERLREAAFTYTFL 743 (758)
Q Consensus 673 ~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~-------~~~~~~~~~~~~~~fl 743 (758)
..+++| +||+||+.|+.=...+...+ ....+.+++++. ++.|-... ...+.++..+.+++=|
T Consensus 139 ~gl~tP-tli~qGtrD~fGtr~~Va~y-----~ls~~iev~wl~---~adHDLkp~k~vsgls~~~hL~~~A~~va~~ 207 (213)
T COG3571 139 TGLKTP-TLITQGTRDEFGTRDEVAGY-----ALSDPIEVVWLE---DADHDLKPRKLVSGLSTADHLKTLAEQVAGW 207 (213)
T ss_pred cCCCCC-eEEeecccccccCHHHHHhh-----hcCCceEEEEec---cCccccccccccccccHHHHHHHHHHHHHHH
Confidence 667898 99999999987554444221 123456778886 88885421 2234455555554433
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-06 Score=83.08 Aligned_cols=217 Identities=15% Similarity=0.168 Sum_probs=112.5
Q ss_pred eeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCC-C-c--hhHHhc
Q 004368 491 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGE-L-G--RQWYEN 566 (758)
Q Consensus 491 ~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~-~-G--~~~~~~ 566 (758)
+.-.+|.+|.+|--.|+.. ...++|+||..-| |+..+ ..|...+.+|+.+||.|+-+|.--+-| + | .+|..
T Consensus 7 i~~~~~~~I~vwet~P~~~--~~~~~~tiliA~G-f~rrm-dh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~eftm- 81 (294)
T PF02273_consen 7 IRLEDGRQIRVWETRPKNN--EPKRNNTILIAPG-FARRM-DHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDINEFTM- 81 (294)
T ss_dssp EEETTTEEEEEEEE---TT--S---S-EEEEE-T-T-GGG-GGGHHHHHHHHTTT--EEEE---B-------------H-
T ss_pred eEcCCCCEEEEeccCCCCC--CcccCCeEEEecc-hhHHH-HHHHHHHHHHhhCCeEEEeccccccccCCCCChhhcch-
Confidence 4457899999998888864 4467899998877 66554 347888889999999999998643321 1 1 11111
Q ss_pred ccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccC---CCC-CC
Q 004368 567 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML---DPT-IP 642 (758)
Q Consensus 567 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~---~~~-~~ 642 (758)
....+|+..+++||.+.|. .+++++-.|.-|-++..+++. ++ ..-.|..+|++|+..+.- ..+ +.
T Consensus 82 ------s~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVGVVnlr~TLe~al~~Dyl~ 150 (294)
T PF02273_consen 82 ------SIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAAD-IN-LSFLITAVGVVNLRDTLEKALGYDYLQ 150 (294)
T ss_dssp ------HHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGG
T ss_pred ------HHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhc-cC-cceEEEEeeeeeHHHHHHHHhccchhh
Confidence 0123789999999998774 679999999999999999995 54 677888889999766531 101 00
Q ss_pred CChhhhh---cc-CCCCCHHHH--HHHH-hc----CcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCc
Q 004368 643 LTTAEWE---EW-GDPWKEEFY--FYMK-SY----SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN 711 (758)
Q Consensus 643 ~~~~~~~---e~-g~p~~~~~~--~~l~-~~----sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~ 711 (758)
+...+.. .+ |.--+.+.| +.++ .+ |....++...+| ++..++.+|.-|...+..++...+... ..+
T Consensus 151 ~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP-~iaF~A~~D~WV~q~eV~~~~~~~~s~--~~k 227 (294)
T PF02273_consen 151 LPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIP-FIAFTANDDDWVKQSEVEELLDNINSN--KCK 227 (294)
T ss_dssp S-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S--EEEEEETT-TTS-HHHHHHHHTT-TT----EE
T ss_pred cchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCC-EEEEEeCCCccccHHHHHHHHHhcCCC--cee
Confidence 0000000 00 111111111 0011 11 334567777898 888899999988877666665544322 123
Q ss_pred eEEEEecCCCCCCCCCCh
Q 004368 712 ILLFKCELGAGHFSKSGR 729 (758)
Q Consensus 712 ~~~~~~~~~~gH~~~~~~ 729 (758)
++.+ +|++|-...+.
T Consensus 228 lysl---~Gs~HdL~enl 242 (294)
T PF02273_consen 228 LYSL---PGSSHDLGENL 242 (294)
T ss_dssp EEEE---TT-SS-TTSSH
T ss_pred EEEe---cCccchhhhCh
Confidence 3333 49999776553
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.31 E-value=2e-05 Score=87.19 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=61.9
Q ss_pred ChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhH----HHHHHHHHHHcCCCCCCcEEEEEeChhHHHHH
Q 004368 535 NSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTD----FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIG 610 (758)
Q Consensus 535 ~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D----~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~ 610 (758)
...+..|+++|+-|++++-|.-+...+. .+++| +.+|++.+.+. +..++|-++|+|+||.+++
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~r~-----------~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a 303 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAHRE-----------WGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCA 303 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhhcC-----------CCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHH
Confidence 4467899999999999999875543222 22344 44566665543 4568999999999999887
Q ss_pred H----HHhhCCC-ceeEEEEcCCccch
Q 004368 611 A----VLNMRPD-LFKAAVAAVPFVDV 632 (758)
Q Consensus 611 ~----~~~~~p~-~f~a~v~~~~~~d~ 632 (758)
. +++.+++ .++.+++.+..+|.
T Consensus 304 ~~~a~~aA~~~~~~V~sltllatplDf 330 (560)
T TIGR01839 304 ALVGHLQALGQLRKVNSLTYLVSLLDS 330 (560)
T ss_pred HHHHHHHhcCCCCceeeEEeeeccccc
Confidence 6 6677775 79998888777773
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00051 Score=70.34 Aligned_cols=192 Identities=21% Similarity=0.215 Sum_probs=109.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-cCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+..+.|+|||++|+.... ...|+++++.+++.... .. ......+.|+|++ .++....+ ..++++++
T Consensus 11 ~i~~~~~~~~~~~l~~~~~-----~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~~~ 80 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSG-----DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD-----KTIRLWDL 80 (289)
T ss_pred CEEEEEEcCCCCEEEEeec-----CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCC-----CeEEEEEc
Confidence 4778899999999987764 24789999988764432 11 1224468999999 55444332 24778888
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITR 347 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s 347 (758)
.++. ....+.... .....+.|+++++.++... ....|.++|+.+++....+......+. ..+++++..++..+
T Consensus 81 ~~~~--~~~~~~~~~-~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 81 ETGE--CVRTLTGHT-SYVSSVAFSPDGRILSSSS---RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred Cccc--ceEEEeccC-CcEEEEEEcCCCCEEEEec---CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence 7642 233333222 2234678999977665543 234678888875542233332222233 33788766554433
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC--EEEEEEEeCCeeEEEEEEcCC
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~l~v~~l~~ 409 (758)
.+ ..|..+++........+..+ ...+..+.+..+ .+++... ++ .+.+|++..
T Consensus 155 -~~----~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~-~~--~i~i~d~~~ 208 (289)
T cd00200 155 -QD----GTIKLWDLRTGKCVATLTGH--TGEVNSVAFSPDGEKLLSSSS-DG--TIKLWDLST 208 (289)
T ss_pred -CC----CcEEEEEccccccceeEecC--ccccceEEECCCcCEEEEecC-CC--cEEEEECCC
Confidence 22 35777777542222222222 223556666655 4544433 44 477888763
|
|
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-05 Score=81.47 Aligned_cols=194 Identities=13% Similarity=0.057 Sum_probs=112.8
Q ss_pred eEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHc----CcEEEEEecCCCCCCchhHHhcccccCC
Q 004368 497 TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR----GFIFAIAQIRGGGELGRQWYENGKFLKK 572 (758)
Q Consensus 497 ~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~----G~~v~~~~~RG~g~~G~~~~~~~~~~~~ 572 (758)
.+....++.|++. .+..++|+++..||-......+ -......|+.. .-+++.+|+----.....++ .
T Consensus 80 ~~~~~vv~lppgy-~~~~k~pvl~~~DG~~~~~~g~-i~~~~dsli~~g~i~pai~vgid~~d~~~R~~~~~-------~ 150 (299)
T COG2382 80 SERRRVVYLPPGY-NPLEKYPVLYLQDGQDWFRSGR-IPRILDSLIAAGEIPPAILVGIDYIDVKKRREELH-------C 150 (299)
T ss_pred cceeEEEEeCCCC-CccccccEEEEeccHHHHhcCC-hHHHHHHHHHcCCCCCceEEecCCCCHHHHHHHhc-------c
Confidence 3455667888887 7778999999999843322222 11223456555 46677776521111111111 1
Q ss_pred cChHhHHHH--HHHHHHHcC--CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhh
Q 004368 573 KNTFTDFIA--CAEYLIKNC--YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW 648 (758)
Q Consensus 573 ~~~~~D~~~--~~~~l~~~~--~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 648 (758)
...+.++++ .+=++.+.. .-++++-+++|.|+||+.++.++.++|++|..+++.+|.+++.-- + ..
T Consensus 151 n~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~--~-~~------- 220 (299)
T COG2382 151 NEAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPL--D-TQ------- 220 (299)
T ss_pred cHHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCcc--c-cc-------
Confidence 111112111 122222221 236688999999999999999999999999999999998774321 1 00
Q ss_pred hccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCC
Q 004368 649 EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 649 ~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
.++. .+...+-++-+..... -++...++.+...+ ..+.+++.|+..+.+...-.| .+||-.
T Consensus 221 ~~~~---------~~~~l~~~~a~~~~~~-~~l~~g~~~~~~~~--pNr~L~~~L~~~g~~~~yre~----~GgHdw 281 (299)
T COG2382 221 PQGE---------VAESLKILHAIGTDER-IVLTTGGEEGDFLR--PNRALAAQLEKKGIPYYYREY----PGGHDW 281 (299)
T ss_pred cccc---------hhhhhhhhhccCccce-EEeecCCccccccc--hhHHHHHHHHhcCCcceeeec----CCCCch
Confidence 1111 1112223333443333 36777677776666 457889999999987643333 349943
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00013 Score=77.20 Aligned_cols=193 Identities=17% Similarity=0.255 Sum_probs=116.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c----ccCcceeEEEecCC-eEEEEEeCCCCCCceEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P----LVGVTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~----~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~ 265 (758)
.+..+++||||++.|=+.. ...++++|=++|+.+-. . -.+.+..++||||+ +|+-.+.|. ..++|
T Consensus 192 FV~~VRysPDG~~Fat~gs-----Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk---t~KIW- 262 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGS-----DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK---TIKIW- 262 (603)
T ss_pred ceeeEEECCCCCeEEEecC-----CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc---eEEEE-
Confidence 5678899999999874432 24799999999987642 1 12335568999999 776655443 23444
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEE
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFF 344 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~ 344 (758)
++.+..-....++...-....+++-|..| .|+..+. .+. |-+++.+.+..++.+..+...+.. .+++||++||
T Consensus 263 -dVs~~slv~t~~~~~~v~dqqvG~lWqkd--~lItVSl-~G~--in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 263 -DVSTNSLVSTWPMGSTVEDQQVGCLWQKD--HLITVSL-SGT--INYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY 336 (603)
T ss_pred -EeeccceEEEeecCCchhceEEEEEEeCC--eEEEEEc-CcE--EEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence 55554322333333332345667778844 3332222 222 345566655534455555455544 4899998776
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC-CEEEEEEEeCCeeEEEEEEcC
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI-DHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~l~v~~l~ 408 (758)
-.+.+ +.|..++... +....+.+......+..+...+ +.++-...++. +++.++.
T Consensus 337 SgsyD-----G~I~~W~~~~-g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~---l~~~~~~ 392 (603)
T KOG0318|consen 337 SGSYD-----GHINSWDSGS-GTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT---LRVISLK 392 (603)
T ss_pred eeccC-----ceEEEEecCC-ccccccccccccceEEEEeecCCCcEEEEecCCe---EEEEecc
Confidence 54332 5788888765 3344466666666777887776 66666666554 5556554
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-05 Score=81.36 Aligned_cols=214 Identities=17% Similarity=0.160 Sum_probs=119.6
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHc-CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 592 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 592 (758)
.+.|.++.+||-.|+. ..|......|... |--|+.+|+|.+|.+... .........+|+...++..... +
T Consensus 50 ~~~Pp~i~lHGl~GS~--~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~-----~~h~~~~ma~dv~~Fi~~v~~~--~ 120 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSK--ENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKI-----TVHNYEAMAEDVKLFIDGVGGS--T 120 (315)
T ss_pred CCCCceEEecccccCC--CCHHHHHHHhcccccCceEEEecccCCCCccc-----cccCHHHHHHHHHHHHHHcccc--c
Confidence 5689999999977765 3355555566654 778999999999976532 1112223334555555444332 2
Q ss_pred CCCcEEEEEeChhH-HHHHHHHhhCCCceeEE-EEc-CC-ccc--------hhhccC--CCCC---C-------------
Q 004368 593 TKEKLCIEGRSAGG-LLIGAVLNMRPDLFKAA-VAA-VP-FVD--------VLTTML--DPTI---P------------- 642 (758)
Q Consensus 593 d~~~i~i~G~S~GG-~l~~~~~~~~p~~f~a~-v~~-~~-~~d--------~~~~~~--~~~~---~------------- 642 (758)
-..++.+.|||||| -++++....+|++..-+ |.. +| .+. .+..|. +... +
T Consensus 121 ~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~~~ 200 (315)
T KOG2382|consen 121 RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIEVG 200 (315)
T ss_pred ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHHHh
Confidence 34789999999999 55566666678765433 332 33 111 111111 1110 0
Q ss_pred --CChhhh-------------hcc-CCC-CCHHHHHHHHhcCccccc--CCCCCCeEEEeccCCCCCCCChHHHHHHHHH
Q 004368 643 --LTTAEW-------------EEW-GDP-WKEEFYFYMKSYSPVDNV--KAQNYPHILVTAGLNDPRVMYSEPAKFVAKL 703 (758)
Q Consensus 643 --~~~~~~-------------~e~-g~p-~~~~~~~~l~~~sp~~~i--~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L 703 (758)
.....| ..| ++. ...+.+..++..+.-..+ .....| +|+++|.++..|+-.+-..+.
T Consensus 201 ~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~p-vlfi~g~~S~fv~~~~~~~~~--- 276 (315)
T KOG2382|consen 201 FDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGP-VLFIKGLQSKFVPDEHYPRME--- 276 (315)
T ss_pred cchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccc-eeEEecCCCCCcChhHHHHHH---
Confidence 000000 011 111 122333332233333223 333666 999999999999976554443
Q ss_pred HhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 704 REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
..-..+++..++ ++||....+.++.+-+. +..|+.++
T Consensus 277 -~~fp~~e~~~ld---~aGHwVh~E~P~~~~~~--i~~Fl~~~ 313 (315)
T KOG2382|consen 277 -KIFPNVEVHELD---EAGHWVHLEKPEEFIES--ISEFLEEP 313 (315)
T ss_pred -Hhccchheeecc---cCCceeecCCHHHHHHH--HHHHhccc
Confidence 333335666775 79999877777766654 45577654
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00011 Score=77.24 Aligned_cols=174 Identities=11% Similarity=0.157 Sum_probs=94.7
Q ss_pred CceEEeecccccCCCCeEEEeeEEECC-CCCEEEEEEeCCCCeE-EEEEEEECCCCceeecc--ccC-cceeEEEecCC-
Q 004368 174 PEHLILDENVKAEGRGFYSVGCFQVSP-DNKLVAYAEDTKGDEI-YTVYVIDIETGTPVGKP--LVG-VTASVEWAGNE- 247 (758)
Q Consensus 174 ~~~vllD~n~~~~~~~~~~i~~~~~SP-DG~~lAy~~~~~G~e~-~~l~v~dl~~g~~~~~~--~~~-~~~~~~wspDg- 247 (758)
..++|++.+. .++.+.+|| |...|+|--....... ..||+++.+++...... .++ ..+.=-|+|||
T Consensus 179 ~~~~v~~~~~--------wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 179 ERKVVFEDTD--------WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGS 250 (386)
T ss_dssp -EEEEEEESS---------EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS
T ss_pred ceeEEEecCc--------cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCC
Confidence 4566665443 456778888 7788888765444432 47999999887766541 122 23445799999
Q ss_pred eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCC-------------cceEEEEE
Q 004368 248 ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK-------------ITRFVFYL 314 (758)
Q Consensus 248 ~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~-------------~~~~l~~~ 314 (758)
.|+|..........-|..+++.++. ...+.+.+ ....+..++||+.++--..+. +..-||++
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~--~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~ 325 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGE--RRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF 325 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT----EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEE
T ss_pred EEEEEeecCCCCceEEEeeCCCCCC--ceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence 8999887555555567778887763 34444332 233456789999765433221 12367888
Q ss_pred eCCCCCceEEeeccc------------cceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCC
Q 004368 315 DVSKPEELRVLTPRV------------VGVDTAASHRGNHFFITRRSDELFNSELLACPVD 363 (758)
Q Consensus 315 d~~~~~~~~~l~~~~------------~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~ 363 (758)
++.++. ...|.... ......|||||++++|.+|..|. ..||.+++.
T Consensus 326 ~~~~~~-~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~--~~vY~v~i~ 383 (386)
T PF14583_consen 326 DVEAGR-FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGP--PAVYLVEIP 383 (386)
T ss_dssp ETTTTE-EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS---EEEEEE--
T ss_pred ccccCc-eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCC--ccEEEEeCc
Confidence 888765 44333221 01123599999999999999753 578988874
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00021 Score=79.82 Aligned_cols=197 Identities=17% Similarity=0.157 Sum_probs=113.0
Q ss_pred eEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECC-CCceeeccccC---cceeEEEecCCeEEEEEeCCCCCCceEEE
Q 004368 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE-TGTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWL 265 (758)
Q Consensus 190 ~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~-~g~~~~~~~~~---~~~~~~wspDg~l~y~~~~~~~~~~~v~~ 265 (758)
...+..+.|||||++|+= ++...+|+|||+. .+..+. ++.+ ....+.|+|+|.++.....+. .+++
T Consensus 203 ~~~v~~~~fs~d~~~l~s-----~s~D~tiriwd~~~~~~~~~-~l~gH~~~v~~~~f~p~g~~i~Sgs~D~----tvri 272 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLS-----GSDDKTLRIWDLKDDGRNLK-TLKGHSTYVTSVAFSPDGNLLVSGSDDG----TVRI 272 (456)
T ss_pred ccceeeeEECCCCcEEEE-----ecCCceEEEeeccCCCeEEE-EecCCCCceEEEEecCCCCEEEEecCCC----cEEE
Confidence 357889999999997763 4446799999994 444443 3332 256789999995444443322 3777
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCc--eEEeeccccc--ee-eEEeecC
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE--LRVLTPRVVG--VD-TAASHRG 340 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~--~~~l~~~~~~--~~-~~~s~dg 340 (758)
+++.++ +-...+..... ....+++++||++|+..+. ...|.++|+.++.. ...+...... +. ..++|+|
T Consensus 273 Wd~~~~--~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~ 346 (456)
T KOG0266|consen 273 WDVRTG--ECVRKLKGHSD-GISGLAFSPDGNLLVSASY---DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG 346 (456)
T ss_pred EeccCC--eEEEeeeccCC-ceEEEEECCCCCEEEEcCC---CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC
Confidence 788875 34445544433 3346789999999876532 45577888887651 1233333322 12 2389999
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCC-ceeeeEEEe-CCEEEEEEEeCCeeEEEEEEcCC
Q 004368 341 NHFFITRRSDELFNSELLACPVDNTSETTVLIPHRES-VKLQDIQLF-IDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~-~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
++++..+.+ ..|..+++...........+... .-+-.+... +...++....++. +.+|++..
T Consensus 347 ~~ll~~~~d-----~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~--v~~~~~~s 410 (456)
T KOG0266|consen 347 KYLLSASLD-----RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS--VYVWDSSS 410 (456)
T ss_pred cEEEEecCC-----CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce--EEEEeCCc
Confidence 977766543 34555566542222222233222 111122212 3344445555554 66787764
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-05 Score=81.37 Aligned_cols=181 Identities=19% Similarity=0.116 Sum_probs=104.5
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc---ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEE
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP---LVGVTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~---~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~ 267 (758)
..++.++|.|+|++|+=+ +-..+.++||+.+++.+... ..+ ..+++|-|||.++-+..-+. -.+|| +
T Consensus 262 ~RVs~VafHPsG~~L~Ta-----sfD~tWRlWD~~tk~ElL~QEGHs~~-v~~iaf~~DGSL~~tGGlD~--~~RvW--D 331 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTA-----SFDSTWRLWDLETKSELLLQEGHSKG-VFSIAFQPDGSLAATGGLDS--LGRVW--D 331 (459)
T ss_pred hhheeeeecCCCceeeec-----ccccchhhcccccchhhHhhcccccc-cceeEecCCCceeeccCccc--hhhee--e
Confidence 578899999999999843 33567899999998875421 222 45599999998877654221 11244 6
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEE
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFIT 346 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~ 346 (758)
+.++ .-++.+++ ...-.++++|||+|-.|+- .+..++-+||-+ .....+-.+.....-+.- -++|+++.+++.
T Consensus 332 lRtg--r~im~L~g-H~k~I~~V~fsPNGy~lAT-gs~Dnt~kVWDL--R~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 332 LRTG--RCIMFLAG-HIKEILSVAFSPNGYHLAT-GSSDNTCKVWDL--RMRSELYTIPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred cccC--cEEEEecc-cccceeeEeECCCceEEee-cCCCCcEEEeee--cccccceecccccchhhheEecccCCeEEEE
Confidence 7776 45666665 3334558999999977654 444455666644 333222222222222222 277866666665
Q ss_pred EcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEE
Q 004368 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLA 391 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 391 (758)
...+ ...+|+..+ +....+.+..+...+.-.+++.+++.++
T Consensus 406 asyD--~t~kiWs~~--~~~~~ksLaGHe~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 406 ASYD--NTVKIWSTR--TWSPLKSLAGHEGKVISLDISPDSQAIA 446 (459)
T ss_pred cccC--cceeeecCC--CcccchhhcCCccceEEEEeccCCceEE
Confidence 5554 235565432 2122223555655444344444444454
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.2e-06 Score=90.07 Aligned_cols=112 Identities=8% Similarity=-0.014 Sum_probs=76.0
Q ss_pred CCCCEEEEecCCCccCCCCCCCh-HHHHHHH--cCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNS-SRLSLLD--RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 590 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~--~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 590 (758)
...|++|++||-........|.. ....|+. ..+.|+++|.+|++.... ..+. ..-...-+++.+.+++|.++.
T Consensus 39 ~~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y--~~a~--~~t~~vg~~la~lI~~L~~~~ 114 (442)
T TIGR03230 39 HETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHY--PTSA--AYTKLVGKDVAKFVNWMQEEF 114 (442)
T ss_pred CCCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCC--cccc--ccHHHHHHHHHHHHHHHHHhh
Confidence 45689999999544322223444 2334543 269999999999875321 1111 111122245666778876654
Q ss_pred CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 591 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 591 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
..+.+++-++|+|+||.+++.++.+.|+++..+++..|.
T Consensus 115 gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 115 NYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred CCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 467899999999999999999999999999988887763
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-05 Score=80.73 Aligned_cols=204 Identities=18% Similarity=0.167 Sum_probs=117.8
Q ss_pred CCCEEEEecCCCccCCCCCCC-----hHHHHHHH-------cCcEEEEEecCCCC--CCchh-HHhcccc---cCCcChH
Q 004368 515 SDPLLLYGYGSYEICNDPAFN-----SSRLSLLD-------RGFIFAIAQIRGGG--ELGRQ-WYENGKF---LKKKNTF 576 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~-----~~~~~l~~-------~G~~v~~~~~RG~g--~~G~~-~~~~~~~---~~~~~~~ 576 (758)
+..+||++||-.|.+...... ..+..++- .-|-|++.|+-|+. ..|.. ....|+. .....++
T Consensus 50 ~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ti 129 (368)
T COG2021 50 KDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITI 129 (368)
T ss_pred CCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcccH
Confidence 467899999855532211110 12333333 34889999998865 22222 1111111 1123678
Q ss_pred hHHHHHHHHHHHcCCCCCCcEE-EEEeChhHHHHHHHHhhCCCceeEEEEcCCccc----------hhh--ccCCCC---
Q 004368 577 TDFIACAEYLIKNCYCTKEKLC-IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD----------VLT--TMLDPT--- 640 (758)
Q Consensus 577 ~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d----------~~~--~~~~~~--- 640 (758)
.|.+.+-+.|++.=.+ ++|. ++|+||||+.++..+..+||..+.+|..+.-.- +.+ -+.++.
T Consensus 130 ~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~n~ 207 (368)
T COG2021 130 RDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPDWNG 207 (368)
T ss_pred HHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCCccC
Confidence 8999988887666333 4554 999999999999999999998776665544211 000 001111
Q ss_pred -------CC---------------CChhhh-hccCC-----C------------------------CCHHHHH----HHH
Q 004368 641 -------IP---------------LTTAEW-EEWGD-----P------------------------WKEEFYF----YMK 664 (758)
Q Consensus 641 -------~~---------------~~~~~~-~e~g~-----p------------------------~~~~~~~----~l~ 664 (758)
.| ....+| ..||. + -|+..|- .|.
T Consensus 208 G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~ald 287 (368)
T COG2021 208 GDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRALD 287 (368)
T ss_pred CCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 11 011111 12332 0 0111111 112
Q ss_pred hcCcccc-------cCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC
Q 004368 665 SYSPVDN-------VKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 665 ~~sp~~~-------i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 726 (758)
.++|-.. +++++.| +|++.-+.|-..|+.+.++.++.|...+. +..++ ...||-..
T Consensus 288 ~~D~s~~~~~l~~al~~i~~~-~lv~gi~sD~lfp~~~~~~~~~~L~~~~~---~~~i~--S~~GHDaF 350 (368)
T COG2021 288 YHDVSRGRGDLTAALARIKAP-VLVVGITSDWLFPPELQRALAEALPAAGA---LREID--SPYGHDAF 350 (368)
T ss_pred hcCCCCCcCcHHHHHhcCccC-EEEEEecccccCCHHHHHHHHHhccccCc---eEEec--CCCCchhh
Confidence 2333222 5567888 99999999999999999999999998875 44444 57799654
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00094 Score=71.90 Aligned_cols=259 Identities=17% Similarity=0.167 Sum_probs=127.1
Q ss_pred EeeEEECCCCCEEEEEEeCC--CCeEEEEEEEECCCCceeec-cc--cCc-ceeEEEecCCeEEEEEeCCCCCCceEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTK--GDEIYTVYVIDIETGTPVGK-PL--VGV-TASVEWAGNEALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~--G~e~~~l~v~dl~~g~~~~~-~~--~~~-~~~~~wspDg~l~y~~~~~~~~~~~v~~~ 266 (758)
.+.+.+|||+++| |+.... .......+-++-++|+.... .. .+. .-.++.+||++++|++.-.. ..|..+
T Consensus 39 Ps~l~~~~~~~~L-Y~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~---g~v~v~ 114 (345)
T PF10282_consen 39 PSWLAVSPDGRRL-YVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG---GSVSVF 114 (345)
T ss_dssp ECCEEE-TTSSEE-EEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT---TEEEEE
T ss_pred CceEEEEeCCCEE-EEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC---CeEEEE
Confidence 3567889999887 555443 22234455555555665543 22 222 23467889996667765332 247777
Q ss_pred EcCCCCCCcEE--Ee--e--ecC-----CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEE---e-ecccc
Q 004368 267 KLEADQSNDIC--LY--H--EKD-----DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRV---L-TPRVV 330 (758)
Q Consensus 267 ~l~~~~~~~~~--v~--~--~~~-----~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~---l-~~~~~ 330 (758)
++.....-... ++ + ..+ ......+.++|||+++++.... ...|++++++... .+.. + .+...
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--ADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CCEEEEEEEeCCCceEEEeeccccccCC
Confidence 77654211111 11 1 111 1222357799999999876543 3456666655432 1322 1 11112
Q ss_pred c-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC-CCccee-----eecCCC--CceeeeEEEe--CCEEEEEEEeCCe
Q 004368 331 G-VDTAASHRGNHFFITRRSDELFNSELLACPVDN-TSETTV-----LIPHRE--SVKLQDIQLF--IDHLAVYEREGGL 399 (758)
Q Consensus 331 ~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~-~~~~~~-----l~~~~~--~~~~~~~~~~--~~~l~~~~~~~g~ 399 (758)
+ ....|+|+|+++|++.... ..|..++++. .+..+. .++... .....++.+. +++||+. ..+.
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs--nr~~ 266 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELS----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS--NRGS 266 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTT----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE--ECTT
T ss_pred CCcEEEEcCCcCEEEEecCCC----CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE--eccC
Confidence 2 2345999999888876554 3455544441 122111 222211 1123455555 5555544 3445
Q ss_pred eEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEE
Q 004368 400 QKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 469 (758)
Q Consensus 400 ~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~ 469 (758)
..|.+++++..++.++.+ ..+.. .+-.-..+..+++++.+++. .....--.+|.+|.++|....
T Consensus 267 ~sI~vf~~d~~~g~l~~~---~~~~~--~G~~Pr~~~~s~~g~~l~Va-~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 267 NSISVFDLDPATGTLTLV---QTVPT--GGKFPRHFAFSPDGRYLYVA-NQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp TEEEEEEECTTTTTEEEE---EEEEE--SSSSEEEEEE-TTSSEEEEE-ETTTTEEEEEEEETTTTEEEE
T ss_pred CEEEEEEEecCCCceEEE---EEEeC--CCCCccEEEEeCCCCEEEEE-ecCCCeEEEEEEeCCCCcEEE
Confidence 668899996443333211 11111 00001224456777766543 333334567788888888443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0016 Score=70.21 Aligned_cols=203 Identities=16% Similarity=0.208 Sum_probs=103.0
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCC-Cceeec--cc------------cC-cceeEEEecCCeEEEEEeCCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGK--PL------------VG-VTASVEWAGNEALVYITMDEIL 258 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~-g~~~~~--~~------------~~-~~~~~~wspDg~l~y~~~~~~~ 258 (758)
.+.++|||++|..+.-.+| .+.+++++. |..... .. .. ....+.|+|||+++|+..-.
T Consensus 91 ~i~~~~~g~~l~vany~~g----~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-- 164 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGG----SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-- 164 (345)
T ss_dssp EEEECTTSSEEEEEETTTT----EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--
T ss_pred EEEEecCCCEEEEEEccCC----eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--
Confidence 4589999999865544344 467777765 443321 11 01 12358999999666776533
Q ss_pred CCceEEEEEcCCCCCCcEE--EeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEE---eecc---cc
Q 004368 259 RPDKAWLHKLEADQSNDIC--LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV---LTPR---VV 330 (758)
Q Consensus 259 ~~~~v~~~~l~~~~~~~~~--v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~---l~~~---~~ 330 (758)
..+|+.+++.....+-.. ...-+...---.+.++|||+++++.......-.++.++..++. ++. +... ..
T Consensus 165 -~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~-~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 165 -ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS-LTEIQTISTLPEGFT 242 (345)
T ss_dssp -TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE-EEEEEEEESCETTSC
T ss_pred -CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc-eeEEEEeeecccccc
Confidence 235888888765321111 1111111111246799999999886654444444555533443 322 1111 11
Q ss_pred ----ceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCC-Cccee--eecCCCCceeeeEEE--eCCEEEEEEEeCCeeE
Q 004368 331 ----GVDTAASHRGNHFFITRRSDELFNSELLACPVDNT-SETTV--LIPHRESVKLQDIQL--FIDHLAVYEREGGLQK 401 (758)
Q Consensus 331 ----~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~-~~~~~--l~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~ 401 (758)
.....++|||++||+ +|+. . ..|..++++.. +..+. .++.. .....++.+ ++++|++..... ..
T Consensus 243 ~~~~~~~i~ispdg~~lyv-snr~-~--~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s--~~ 315 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYV-SNRG-S--NSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDS--NT 315 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEE-EECT-T--TEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTT--TE
T ss_pred ccCCceeEEEecCCCEEEE-Eecc-C--CEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCC--Ce
Confidence 122348999997766 5554 2 34555555321 22222 23322 223566666 556666544333 34
Q ss_pred EEEEEcCCCCC
Q 004368 402 ITTYRLPAVGE 412 (758)
Q Consensus 402 l~v~~l~~~g~ 412 (758)
+.+++++..++
T Consensus 316 v~vf~~d~~tG 326 (345)
T PF10282_consen 316 VSVFDIDPDTG 326 (345)
T ss_dssp EEEEEEETTTT
T ss_pred EEEEEEeCCCC
Confidence 77888874443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0013 Score=67.13 Aligned_cols=222 Identities=15% Similarity=0.154 Sum_probs=121.8
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEe-cCCeEEEEEeCCCCCCceEEEEEcCCCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWA-GNEALVYITMDEILRPDKAWLHKLEADQS 273 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~ws-pDg~l~y~~~~~~~~~~~v~~~~l~~~~~ 273 (758)
++.|.++...|.|+ |..+ .+|+.++.++++......+. ..+++.. +||.++...... +.+.++.++
T Consensus 4 gp~~d~~~g~l~~~-D~~~---~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~------~~~~d~~~g-- 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWV-DIPG---GRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGG------IAVVDPDTG-- 70 (246)
T ss_dssp EEEEETTTTEEEEE-ETTT---TEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTC------EEEEETTTT--
T ss_pred ceEEECCCCEEEEE-EcCC---CEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCc------eEEEecCCC--
Confidence 67888866666444 4444 37999999998876544444 3446666 677776654321 444477665
Q ss_pred CcEEEeeec-C--C-ceeeEEEEcCCCcEEEEEecCCc----c--eEEEEEeCCCCCceEEeeccccce-eeEEeecCCE
Q 004368 274 NDICLYHEK-D--D-IYSLGLQASESKKFLFIASESKI----T--RFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNH 342 (758)
Q Consensus 274 ~~~~v~~~~-~--~-~~~~~~~~S~Dg~~l~~~s~~~~----~--~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg~~ 342 (758)
+-..+.... . + ...-++.+.+||+ |+++..... . ..||+++.+ ++ .+.+....... ...|+|||+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchh
Confidence 233344332 1 1 2233578999998 666553321 1 679999998 54 44443332211 2348999998
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCCCc----ceeeecCCCC-ceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCcccc
Q 004368 343 FFITRRSDELFNSELLACPVDNTSE----TTVLIPHRES-VKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKS 416 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~~~----~~~l~~~~~~-~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~ 416 (758)
||+.... +.+|++++++..+. .+.+...... ..+.++.++.+ .|++.....+ .|.+++.+ |+.+
T Consensus 148 lyv~ds~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~--~I~~~~p~--G~~~-- 217 (246)
T PF08450_consen 148 LYVADSF----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG--RIVVFDPD--GKLL-- 217 (246)
T ss_dssp EEEEETT----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT--EEEEEETT--SCEE--
T ss_pred eeecccc----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC--EEEEECCC--ccEE--
Confidence 8886443 36799998864222 1223222222 24678888875 5554444333 57777665 6643
Q ss_pred ccCCceeeccCcccccCCCCc-ccCCcEEEEEE
Q 004368 417 LQGGKSVEFIDPVYSIDPSES-VFSSRILRFHY 448 (758)
Q Consensus 417 l~~~~~i~~p~~~~~i~~~~~-~~d~~~l~~~~ 448 (758)
..+.+|.+ .+....+ -++.++++++.
T Consensus 218 ----~~i~~p~~--~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 218 ----REIELPVP--RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ----EEEE-SSS--SEEEEEEESTTSSEEEEEE
T ss_pred ----EEEcCCCC--CEEEEEEECCCCCEEEEEe
Confidence 44555522 1111111 23556676654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-05 Score=79.63 Aligned_cols=100 Identities=19% Similarity=0.158 Sum_probs=65.0
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHc--CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDR--GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
.|.++++||.++...... .....+... .|.++.+|.||+|... .. .........-++.+.+.-..
T Consensus 21 ~~~i~~~hg~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~g~g~s~----~~------~~~~~~~~~~~~~~~~~~~~- 87 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWR--PVFKVLPALAARYRVIAPDLRGHGRSD----PA------GYSLSAYADDLAALLDALGL- 87 (282)
T ss_pred CCeEEEeCCCCCchhhhH--HHHHHhhccccceEEEEecccCCCCCC----cc------cccHHHHHHHHHHHHHHhCC-
Confidence 568999999876554432 222222221 1999999999988765 00 11112223333333332222
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
.++.++|+|+||.++..++.++|+.++++|+..+.
T Consensus 88 -~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~ 122 (282)
T COG0596 88 -EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPA 122 (282)
T ss_pred -CceEEEEecccHHHHHHHHHhcchhhheeeEecCC
Confidence 34999999999999999999999999999888754
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00041 Score=77.67 Aligned_cols=199 Identities=9% Similarity=0.021 Sum_probs=111.2
Q ss_pred EEeeEEECC-CCCEEEEEEeCCCCeEEEEEEEECCCCcee-----ec-ccc---CcceeEEEecCC-eEEEEEeCCCCCC
Q 004368 192 SVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPV-----GK-PLV---GVTASVEWAGNE-ALVYITMDEILRP 260 (758)
Q Consensus 192 ~i~~~~~SP-DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~-----~~-~~~---~~~~~~~wspDg-~l~y~~~~~~~~~ 260 (758)
.+..+.||| |+++||-... ...|++||+.++... .. .+. ..+..++|+|++ .++.+...+
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~-----DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D---- 147 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASE-----DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD---- 147 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeC-----CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC----
Confidence 477889999 8888875443 347999999765321 00 222 225668999997 666665432
Q ss_pred ceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc--eeeEEee
Q 004368 261 DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG--VDTAASH 338 (758)
Q Consensus 261 ~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~--~~~~~s~ 338 (758)
..|.++++.++. ....+... .....++.|+|||+.|+..+.+ ..|.++|+.+++....+...... ....|.+
T Consensus 148 gtVrIWDl~tg~--~~~~l~~h-~~~V~sla~spdG~lLatgs~D---g~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 148 MVVNVWDVERGK--AVEVIKCH-SDQITSLEWNLDGSLLCTTSKD---KKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred CEEEEEECCCCe--EEEEEcCC-CCceEEEEEECCCCEEEEecCC---CEEEEEECCCCcEEEEEecCCCCcceEEEEcC
Confidence 247788887662 33333322 2234578899999987654432 34778888876522233322221 1234777
Q ss_pred cCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCC--CceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 339 RGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE--SVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 339 dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+++.++...... .....|..+|+............+. ...+..++.+++.+++....++ .|++|++.
T Consensus 222 ~~~~ivt~G~s~-s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg--~Iriwdl~ 290 (493)
T PTZ00421 222 RKDLIITLGCSK-SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG--NIRCFELM 290 (493)
T ss_pred CCCeEEEEecCC-CCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC--eEEEEEee
Confidence 777665443221 2245677788765322211221111 1122234444555555544344 47788886
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00062 Score=72.05 Aligned_cols=192 Identities=13% Similarity=0.118 Sum_probs=101.0
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEE--------ecCCeEEEEEeCCCCCCceEEE
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEW--------AGNEALVYITMDEILRPDKAWL 265 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~w--------spDg~l~y~~~~~~~~~~~v~~ 265 (758)
.+.+|||||+|.+. +... ...+-|+|+++++.+.. ..+++..-+.+ +.||++.+++.+..+. +..
T Consensus 109 ~~~ls~dgk~l~V~-n~~p--~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~---~~~ 182 (352)
T TIGR02658 109 MTSLTPDNKTLLFY-QFSP--SPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN---PKI 182 (352)
T ss_pred eEEECCCCCEEEEe-cCCC--CCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc---eEE
Confidence 67899999997543 3332 25789999999998864 55555433444 4555443444433322 111
Q ss_pred EEcCCCCCCcEEEeee-cCCceeeEEEEcC-CCcEEEEEecCCcceEEEEEeCCCCC-----ceEEeecc-------ccc
Q 004368 266 HKLEADQSNDICLYHE-KDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPE-----ELRVLTPR-------VVG 331 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~-~~~~~~~~~~~S~-Dg~~l~~~s~~~~~~~l~~~d~~~~~-----~~~~l~~~-------~~~ 331 (758)
. ...+|.. .++- +..+.+++ ||++++++.. ..|+.+|+.+.+ .+..++.. ..+
T Consensus 183 ~--------~~~vf~~~~~~v-~~rP~~~~~dg~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g 249 (352)
T TIGR02658 183 K--------PTEVFHPEDEYL-INHPAYSNKSGRLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG 249 (352)
T ss_pred e--------eeeeecCCcccc-ccCCceEcCCCcEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence 1 1112221 1111 11122345 9988877554 678999976543 12222211 112
Q ss_pred ee-eEEeecCCEEEEEEcCCC-----CCCcEEEEEeCCCCCcceeeecCCCCceeeeEEE--eCCEEEEEEEeCCeeEEE
Q 004368 332 VD-TAASHRGNHFFITRRSDE-----LFNSELLACPVDNTSETTVLIPHRESVKLQDIQL--FIDHLAVYEREGGLQKIT 403 (758)
Q Consensus 332 ~~-~~~s~dg~~l~~~s~~~~-----~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~l~ 403 (758)
.+ ..++++|+++|++.+... .+..+|..+|..+..... .++-.. ...++.+ +++.+++..+ .....+.
T Consensus 250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~-~i~vG~--~~~~iavS~Dgkp~lyvtn-~~s~~Vs 325 (352)
T TIGR02658 250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR-KIELGH--EIDSINVSQDAKPLLYALS-TGDKTLY 325 (352)
T ss_pred ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE-EEeCCC--ceeeEEECCCCCeEEEEeC-CCCCcEE
Confidence 22 248899999999764321 123589999987632222 222222 2344444 4452333333 2334477
Q ss_pred EEEcCC
Q 004368 404 TYRLPA 409 (758)
Q Consensus 404 v~~l~~ 409 (758)
+++...
T Consensus 326 ViD~~t 331 (352)
T TIGR02658 326 IFDAET 331 (352)
T ss_pred EEECcC
Confidence 888763
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=80.52 Aligned_cols=133 Identities=20% Similarity=0.219 Sum_probs=95.3
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCCh-HHHHHHHcCcEEEEEecCCCCCC-chhHH
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS-SRLSLLDRGFIFAIAQIRGGGEL-GRQWY 564 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~G~~v~~~~~RG~g~~-G~~~~ 564 (758)
++.++++.||.+|...++-.+.. ..+...-+|+..-|.-|. |.. .+..=++.||.|+..|.+|-+|+ |..+
T Consensus 215 ~R~kiks~dgneiDtmF~d~r~n-~~~ngq~LvIC~EGNAGF-----YEvG~m~tP~~lgYsvLGwNhPGFagSTG~P~- 287 (517)
T KOG1553|consen 215 QRLKIKSSDGNEIDTMFLDGRPN-QSGNGQDLVICFEGNAGF-----YEVGVMNTPAQLGYSVLGWNHPGFAGSTGLPY- 287 (517)
T ss_pred eEEEEeecCCcchhheeecCCCC-CCCCCceEEEEecCCccc-----eEeeeecChHHhCceeeccCCCCccccCCCCC-
Confidence 78899999999998876665433 222223566666663221 111 11233567999999999996554 3322
Q ss_pred hcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh
Q 004368 565 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT 634 (758)
Q Consensus 565 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~ 634 (758)
-.|+..-..+++++.+..=...++.|.++|+|-||+-+++++..+|| ++|+|+.+-|-|++-
T Consensus 288 -------p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllp 349 (517)
T KOG1553|consen 288 -------PVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLP 349 (517)
T ss_pred -------cccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhh
Confidence 23555666778888887755678999999999999999999999997 699999999988654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0035 Score=67.72 Aligned_cols=255 Identities=15% Similarity=0.106 Sum_probs=122.2
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
.....+||||+++ |..+++| .|.++|+.+++.... .......++++|+||+.+|++.-. +..+...+..+.
T Consensus 39 h~~~~~s~Dgr~~-yv~~rdg----~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~---~~~v~v~D~~tl 110 (369)
T PF02239_consen 39 HAGLKFSPDGRYL-YVANRDG----TVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYE---PGTVSVIDAETL 110 (369)
T ss_dssp EEEEE-TT-SSEE-EEEETTS----EEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEE---TTEEEEEETTT-
T ss_pred eeEEEecCCCCEE-EEEcCCC----eEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecC---CCceeEeccccc
Confidence 3456789999985 5556655 589999999997753 333335669999999655665422 235777777665
Q ss_pred CCCcEEEeeecC----CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCce--EEeeccccceeeEEeecCCEEEE
Q 004368 272 QSNDICLYHEKD----DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL--RVLTPRVVGVDTAASHRGNHFFI 345 (758)
Q Consensus 272 ~~~~~~v~~~~~----~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~s~dg~~l~~ 345 (758)
+.-..+...... ..-...+.-++++...+++.. +..+||++|..+.+.+ +.+.....-....|+|+|++++.
T Consensus 111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk--d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK--DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET--TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred cceeecccccccccccCCCceeEEecCCCCEEEEEEc--cCCeEEEEEeccccccceeeecccccccccccCcccceeee
Confidence 221111111100 111234556788876665544 4568999998775512 22211111123459999998888
Q ss_pred EEcCCCCCCcEEEEEeCCCCCcceeeecCCCC---ceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCC-CccccccCCc
Q 004368 346 TRRSDELFNSELLACPVDNTSETTVLIPHRES---VKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVG-EPLKSLQGGK 421 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g-~~~~~l~~~~ 421 (758)
..+.. .++..+|.++ .....++..+.. .....+--.+-..+......+...+-.+..+... -....+.--+
T Consensus 189 a~~~s----n~i~viD~~~-~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 189 AANGS----NKIAVIDTKT-GKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp EEGGG----TEEEEEETTT-TEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred ccccc----ceeEEEeecc-ceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 76654 3788888765 222223322211 1122232222334444444444333333333211 0001111112
Q ss_pred eeeccCcccccCCCCcccCCcEEEEEE-ecCCCCCEEEEEECCCCc
Q 004368 422 SVEFIDPVYSIDPSESVFSSRILRFHY-SSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 422 ~i~~p~~~~~i~~~~~~~d~~~l~~~~-sS~~~P~~i~~~d~~~~~ 466 (758)
.+...... + ....+++++.+++.. .++. -..+..+|.++.+
T Consensus 264 ~I~~~G~g--l-Fi~thP~s~~vwvd~~~~~~-~~~v~viD~~tl~ 305 (369)
T PF02239_consen 264 TIPTQGGG--L-FIKTHPDSRYVWVDTFLNPD-ADTVQVIDKKTLK 305 (369)
T ss_dssp EEE-SSSS-----EE--TT-SEEEEE-TT-SS-HT-EEEEECCGTE
T ss_pred EEECCCCc--c-eeecCCCCccEEeeccCCCC-CceEEEEECcCcc
Confidence 33332221 1 234478888888763 3333 5689999988765
|
... |
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00013 Score=75.54 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=78.1
Q ss_pred EEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchh--HHhc-----ccccCCc
Q 004368 501 ICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ--WYEN-----GKFLKKK 573 (758)
Q Consensus 501 ~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~--~~~~-----~~~~~~~ 573 (758)
.-++.|+.. . ....|++|+..|.............+..|++.|+..++...+-.|..-.. +... .....+.
T Consensus 79 ~~~~~P~~~-~-~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~ 156 (348)
T PF09752_consen 79 FQLLLPKRW-D-SPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGR 156 (348)
T ss_pred EEEEECCcc-c-cCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHHHHHHh
Confidence 344556653 1 24589999888843322221222235578888999999986654432111 1000 0112234
Q ss_pred ChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 574 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 574 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
..+.+..+.+.||.++|+ .++++.|.||||.+|..+++..|.-..++-+.++
T Consensus 157 ~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~ 208 (348)
T PF09752_consen 157 ATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSW 208 (348)
T ss_pred HHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecc
Confidence 567778889999999987 5999999999999999999988876555444443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00011 Score=76.88 Aligned_cols=124 Identities=12% Similarity=0.158 Sum_probs=87.9
Q ss_pred EEEEEECCCCceeec--cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCC
Q 004368 218 TVYVIDIETGTPVGK--PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASES 295 (758)
Q Consensus 218 ~l~v~dl~~g~~~~~--~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~D 295 (758)
.|-|+|.++|+.... .+.+ ...+.-+|||+.+.++.+. .++|.+++.++. ..+.+........++.|+|+
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~-I~av~vs~dGK~~vvaNdr----~el~vididngn---v~~idkS~~~lItdf~~~~n 454 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGN-IEAVKVSPDGKKVVVANDR----FELWVIDIDNGN---VRLIDKSEYGLITDFDWHPN 454 (668)
T ss_pred eEEEEecCCceEEEeeCCccc-eEEEEEcCCCcEEEEEcCc----eEEEEEEecCCC---eeEecccccceeEEEEEcCC
Confidence 578889988887653 2333 4458889999655555443 479999999883 33444444556678899999
Q ss_pred CcEEEEEecCC-cceEEEEEeCCCCCceEEe-eccccceeeEEeecCCEEEEEEcCC
Q 004368 296 KKFLFIASESK-ITRFVFYLDVSKPEELRVL-TPRVVGVDTAASHRGNHFFITRRSD 350 (758)
Q Consensus 296 g~~l~~~s~~~-~~~~l~~~d~~~~~~~~~l-~~~~~~~~~~~s~dg~~l~~~s~~~ 350 (758)
++||++.-.+. -+..|.+.|.++++ .-.+ ++...+....|+|||+.|||++++.
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~K-iy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGK-IYDVTTPTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCe-EEEecCCcccccCcccCCCCcEEEEEeccc
Confidence 99999876543 34678889998876 4434 3444445566999999999999875
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3e-05 Score=75.79 Aligned_cols=198 Identities=20% Similarity=0.181 Sum_probs=110.4
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHc--C-cEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDR--G-FIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 590 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G-~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 590 (758)
.+.-++.+.|-|.+.+. +..|..+ + +.++.+.++|.+.. .+..-++|+.+.++.|..+-
T Consensus 6 ~~~~L~cfP~AGGsa~~-------fr~W~~~lp~~iel~avqlPGR~~r-----------~~ep~~~di~~Lad~la~el 67 (244)
T COG3208 6 ARLRLFCFPHAGGSASL-------FRSWSRRLPADIELLAVQLPGRGDR-----------FGEPLLTDIESLADELANEL 67 (244)
T ss_pred CCceEEEecCCCCCHHH-------HHHHHhhCCchhheeeecCCCcccc-----------cCCcccccHHHHHHHHHHHh
Confidence 34456777776544332 2333331 3 77899999987753 11233467777777776653
Q ss_pred C--CCCCcEEEEEeChhHHHHHHHHhhC------CCceeEEEEcCCccchhhccCCCCCCCChhh----hhcc-CCC---
Q 004368 591 Y--CTKEKLCIEGRSAGGLLIGAVLNMR------PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAE----WEEW-GDP--- 654 (758)
Q Consensus 591 ~--~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~----~~e~-g~p--- 654 (758)
. .-....+++||||||.++.-++.+. |..|-..-+.+|..+--... ......+ ..++ |.|
T Consensus 68 ~~~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i----~~~~D~~~l~~l~~lgG~p~e~ 143 (244)
T COG3208 68 LPPLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQI----HHLDDADFLADLVDLGGTPPEL 143 (244)
T ss_pred ccccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCc----cCCCHHHHHHHHHHhCCCChHH
Confidence 3 2335899999999999998777642 33333334445533211111 1111111 1223 444
Q ss_pred -CCHHHH-----------HHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCC
Q 004368 655 -WKEEFY-----------FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 722 (758)
Q Consensus 655 -~~~~~~-----------~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g 722 (758)
+|+|.. ..+..|.-... ..+.+| +.++.|++|..|...+...|.+.. +...++.++ ++|
T Consensus 144 led~El~~l~LPilRAD~~~~e~Y~~~~~-~pl~~p-i~~~~G~~D~~vs~~~~~~W~~~t---~~~f~l~~f----dGg 214 (244)
T COG3208 144 LEDPELMALFLPILRADFRALESYRYPPP-APLACP-IHAFGGEKDHEVSRDELGAWREHT---KGDFTLRVF----DGG 214 (244)
T ss_pred hcCHHHHHHHHHHHHHHHHHhcccccCCC-CCcCcc-eEEeccCcchhccHHHHHHHHHhh---cCCceEEEe----cCc
Confidence 355432 22222322211 345888 999999999999865555454432 346777777 589
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 723 HFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 723 H~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
|++..... ...++++.+.++
T Consensus 215 HFfl~~~~------~~v~~~i~~~l~ 234 (244)
T COG3208 215 HFFLNQQR------EEVLARLEQHLA 234 (244)
T ss_pred ceehhhhH------HHHHHHHHHHhh
Confidence 98753322 224567766664
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00027 Score=77.98 Aligned_cols=197 Identities=16% Similarity=0.152 Sum_probs=125.5
Q ss_pred eEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc---cCcceeEEEecCC-eEEEEEeCCCCCCceEEE
Q 004368 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---VGVTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (758)
Q Consensus 190 ~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~---~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~ 265 (758)
+.++..++.||||++||= |.+...|.|||..+|-=.. ++ ......+.|+.+| .++-.+.|.. |..
T Consensus 350 ~~~i~~l~YSpDgq~iaT-----G~eDgKVKvWn~~SgfC~v-TFteHts~Vt~v~f~~~g~~llssSLDGt-----VRA 418 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIAT-----GAEDGKVKVWNTQSGFCFV-TFTEHTSGVTAVQFTARGNVLLSSSLDGT-----VRA 418 (893)
T ss_pred ccceeeEEECCCCcEEEe-----ccCCCcEEEEeccCceEEE-EeccCCCceEEEEEEecCCEEEEeecCCe-----EEe
Confidence 568899999999999994 5556679999998875433 22 2235679999999 5555555654 555
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEE
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFF 344 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~ 344 (758)
+++... ..-..|+.+.+..+..++..|.|.-+. ....+.-+|+++++++|+.+..|..++..+.. .++|+|..|+
T Consensus 419 wDlkRY--rNfRTft~P~p~QfscvavD~sGelV~--AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 419 WDLKRY--RNFRTFTSPEPIQFSCVAVDPSGELVC--AGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred eeeccc--ceeeeecCCCceeeeEEEEcCCCCEEE--eeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE
Confidence 555443 334456666666666777778887543 45667789999999999733344444444433 4899999887
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
-.+.+. ..+++-+=-.. +..+ -++...++.--.|.++++.+.+...+ | +|.+|+...
T Consensus 495 S~SWDk---TVRiW~if~s~-~~vE-tl~i~sdvl~vsfrPdG~elaVaTld-g--qItf~d~~~ 551 (893)
T KOG0291|consen 495 SGSWDK---TVRIWDIFSSS-GTVE-TLEIRSDVLAVSFRPDGKELAVATLD-G--QITFFDIKE 551 (893)
T ss_pred eccccc---eEEEEEeeccC-ceee-eEeeccceeEEEEcCCCCeEEEEEec-c--eEEEEEhhh
Confidence 776654 34555432111 1222 22333344445677788888776653 3 366676653
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00013 Score=72.65 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=40.1
Q ss_pred HHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc
Q 004368 585 YLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 585 ~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
|+.++.-+|+++.+|+|+|+||++++.++..+|+.|.+.++.+|-+
T Consensus 127 ~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSl 172 (264)
T COG2819 127 FIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSL 172 (264)
T ss_pred HHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchh
Confidence 3334466899999999999999999999999999999999999853
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0081 Score=63.72 Aligned_cols=116 Identities=16% Similarity=0.054 Sum_probs=71.3
Q ss_pred CCCEEEEEEeCCC-CeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeC------CCCCCceEEEEEcCCCC
Q 004368 201 DNKLVAYAEDTKG-DEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMD------EILRPDKAWLHKLEADQ 272 (758)
Q Consensus 201 DG~~lAy~~~~~G-~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~------~~~~~~~v~~~~l~~~~ 272 (758)
|+++ +|..+..- +-..+|+|+|.++++.+.. .....-.. ..||||+.+|++.. .+.+...|-.+++.+..
T Consensus 11 ~~~~-v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARR-VYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCE-EEEECCcccccCceEEEEECCCCEEEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 5555 67776541 1115899999999988763 22222233 49999965566543 23344567788888774
Q ss_pred CCcEEEeeecCCc-----eeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 273 SNDICLYHEKDDI-----YSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 273 ~~~~~v~~~~~~~-----~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
....+... .++. .-..+.+|||||+|++. +......|-++|+++++
T Consensus 89 ~~~~i~~p-~~p~~~~~~~~~~~~ls~dgk~l~V~-n~~p~~~V~VvD~~~~k 139 (352)
T TIGR02658 89 PIADIELP-EGPRFLVGTYPWMTSLTPDNKTLLFY-QFSPSPAVGVVDLEGKA 139 (352)
T ss_pred EEeEEccC-CCchhhccCccceEEECCCCCEEEEe-cCCCCCEEEEEECCCCc
Confidence 43333332 2222 11246789999998874 33345678899998876
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.01 Score=60.97 Aligned_cols=245 Identities=11% Similarity=0.074 Sum_probs=116.7
Q ss_pred EEEEEEECC--CCceeec-cc--cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeee---cCCceee
Q 004368 217 YTVYVIDIE--TGTPVGK-PL--VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHE---KDDIYSL 288 (758)
Q Consensus 217 ~~l~v~dl~--~g~~~~~-~~--~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~---~~~~~~~ 288 (758)
..|++++++ +|+.... .+ .+..+.++|+|+++.+|+....+. ...+-.+.++....+-..+-.. ..+. +
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-~ggvaay~iD~~~G~Lt~ln~~~~~g~~p--~ 92 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-EGGVAAYRIDPDDGRLTFLNRQTLPGSPP--C 92 (346)
T ss_pred CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-cCcEEEEEEcCCCCeEEEeeccccCCCCC--e
Confidence 346666665 4444322 11 222455899999965566543322 2224444444321122222111 1222 4
Q ss_pred EEEEcCCCcEEEEEecCCcceEEEEEeCCCCC--ceEEeeccccc----------eeeE-EeecCCEEEEEEcCCCCCCc
Q 004368 289 GLQASESKKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVG----------VDTA-ASHRGNHFFITRRSDELFNS 355 (758)
Q Consensus 289 ~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~--~~~~l~~~~~~----------~~~~-~s~dg~~l~~~s~~~~~~~~ 355 (758)
.++.++||++++...-..+.-.++-+..+ |. ....+...... ..+. ++|+|++|+ +.+.+ ..
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~-v~DLG-~D-- 167 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLV-VPDLG-TD-- 167 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEE-EeecC-Cc--
Confidence 57789999998876655554444444333 33 12111111111 2333 899998654 44444 33
Q ss_pred EEEEEeCCCCCc--cee-eecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccC----c
Q 004368 356 ELLACPVDNTSE--TTV-LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID----P 428 (758)
Q Consensus 356 ~L~~~~~~~~~~--~~~-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~----~ 428 (758)
+++..+++.+.. ... .++++...+--.|.+.++..|++..-++ .+.++..+..++.+..++.- -.+|+ .
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~s--tV~v~~y~~~~g~~~~lQ~i--~tlP~dF~g~ 243 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNS--TVDVLEYNPAVGKFEELQTI--DTLPEDFTGT 243 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCC--EEEEEEEcCCCceEEEeeee--ccCccccCCC
Confidence 455555543211 111 3344333333345566666665554444 46666666543433333211 11232 1
Q ss_pred ccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEEEEEeee
Q 004368 429 VYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETV 475 (758)
Q Consensus 429 ~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~~~~~~~ 475 (758)
.+ ......+.|++.++. ..-.-.--.+|.+|..+++.++....+.
T Consensus 244 ~~-~aaIhis~dGrFLYa-sNRg~dsI~~f~V~~~~g~L~~~~~~~t 288 (346)
T COG2706 244 NW-AAAIHISPDGRFLYA-SNRGHDSIAVFSVDPDGGKLELVGITPT 288 (346)
T ss_pred Cc-eeEEEECCCCCEEEE-ecCCCCeEEEEEEcCCCCEEEEEEEecc
Confidence 11 122334566754433 2222234567788888888766655543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00023 Score=68.63 Aligned_cols=199 Identities=14% Similarity=0.132 Sum_probs=107.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccC---cceeEEEecCCeEEEEEeCCC----------
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG---VTASVEWAGNEALVYITMDEI---------- 257 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~---~~~~~~wspDg~l~y~~~~~~---------- 257 (758)
.+....++||++.||-. | +..|+++|+.++.+.+. ++++ .+..+.|--||+..|++.+++
T Consensus 42 qVNrLeiTpdk~~LAaa----~--~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~ 115 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAA----G--NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL 115 (311)
T ss_pred ceeeEEEcCCcchhhhc----c--CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc
Confidence 46778999999999843 3 47899999999887554 4433 256688888997778765442
Q ss_pred ---------------------------CCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceE
Q 004368 258 ---------------------------LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRF 310 (758)
Q Consensus 258 ---------------------------~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~ 310 (758)
+....|+.++++...-.. .+..|.+ .+.-++...|||++|+. .+++++-
T Consensus 116 ~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~-~liPe~~-~~i~sl~v~~dgsml~a-~nnkG~c- 191 (311)
T KOG0315|consen 116 SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH-ELIPEDD-TSIQSLTVMPDGSMLAA-ANNKGNC- 191 (311)
T ss_pred ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc-ccCCCCC-cceeeEEEcCCCcEEEE-ecCCccE-
Confidence 011234445554432111 1222222 23346778999999764 4555544
Q ss_pred EEEEeCCCCC---ceEEeecccc--c--eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCc-eeee
Q 004368 311 VFYLDVSKPE---ELRVLTPRVV--G--VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESV-KLQD 382 (758)
Q Consensus 311 l~~~d~~~~~---~~~~l~~~~~--~--~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~-~~~~ 382 (758)
|+.++-+.. .+.++.+-.. + ....+|||+++|+-.+.+. ..+|+.. ++--..+..+.....- =-..
T Consensus 192 -yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk---tv~iwn~--~~~~kle~~l~gh~rWvWdc~ 265 (311)
T KOG0315|consen 192 -YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK---TVKIWNT--DDFFKLELVLTGHQRWVWDCA 265 (311)
T ss_pred -EEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc---eEEEEec--CCceeeEEEeecCCceEEeee
Confidence 444543332 3444444221 1 2335899999887665543 3444443 3310111122211110 0123
Q ss_pred EEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 383 IQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
|+.++.+|+ +...++. .++|++..
T Consensus 266 FS~dg~Ylv-Tassd~~--~rlW~~~~ 289 (311)
T KOG0315|consen 266 FSADGEYLV-TASSDHT--ARLWDLSA 289 (311)
T ss_pred eccCccEEE-ecCCCCc--eeeccccc
Confidence 444555554 4444444 55677764
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00052 Score=73.32 Aligned_cols=235 Identities=13% Similarity=0.097 Sum_probs=136.0
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceee---ccccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG---KPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~---~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
-.-++||.|+|++|-..- ..|.|++..+=..+. +.++|+ ..+.|||-+ -|+|-+....+.|.++-+..+
T Consensus 308 WP~frWS~DdKy~Arm~~------~sisIyEtpsf~lld~Kslki~gI-r~FswsP~~~llAYwtpe~~~~parvtL~ev 380 (698)
T KOG2314|consen 308 WPIFRWSHDDKYFARMTG------NSISIYETPSFMLLDKKSLKISGI-RDFSWSPTSNLLAYWTPETNNIPARVTLMEV 380 (698)
T ss_pred cceEEeccCCceeEEecc------ceEEEEecCceeeecccccCCccc-cCcccCCCcceEEEEcccccCCcceEEEEec
Confidence 345789999999996653 346777654422222 134444 458999999 788887766677888888888
Q ss_pred CCCCCC-cEEEeeecCCceeeEEEEcCCCcEEEEEecCCcc---------eEEEEEeCCCCCceEEeeccccceeeEEee
Q 004368 269 EADQSN-DICLYHEKDDIYSLGLQASESKKFLFIASESKIT---------RFVFYLDVSKPEELRVLTPRVVGVDTAASH 338 (758)
Q Consensus 269 ~~~~~~-~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~---------~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~ 338 (758)
.+...- ...++.-.| +.+.|-..|+||.+...+... -+|+.++-.+- ++..+--...-+...|.|
T Consensus 381 Ps~~~iRt~nlfnVsD----ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~velke~vi~FaWEP 455 (698)
T KOG2314|consen 381 PSKREIRTKNLFNVSD----CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVVELKESVIAFAWEP 455 (698)
T ss_pred Cccceeeeccceeeec----cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceeeecchheeeeeecc
Confidence 766321 111333222 245699999999998765321 35666654332 222221122224456999
Q ss_pred cCCEEEEEEcCCCCCCcEEEEEeCCCCCccee-eecCCCCc--eeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccc
Q 004368 339 RGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESV--KLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLK 415 (758)
Q Consensus 339 dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~-l~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~ 415 (758)
.|+++.+++......+.+.|.+.... ..+ ++..-+.. .-..+++.|..+++.........+..|+.+...
T Consensus 456 ~gdkF~vi~g~~~k~tvsfY~~e~~~---~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~---- 528 (698)
T KOG2314|consen 456 HGDKFAVISGNTVKNTVSFYAVETNI---KKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD---- 528 (698)
T ss_pred CCCeEEEEEccccccceeEEEeecCC---CchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhh----
Confidence 99999988766534556677665322 222 22221111 223456667788877766555567788776311
Q ss_pred cccCCceeeccCcccccCCCCcccCCcEEEEEEecC
Q 004368 416 SLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSL 451 (758)
Q Consensus 416 ~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~ 451 (758)
.+.+..|++. ......+++.|..+.-..+++
T Consensus 529 ----~k~~~~~eh~-~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 529 ----LKDTASPEHF-AATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred ----hhhccCcccc-ccccceECCCCCEEEEeeehh
Confidence 1223333321 234466778777665544444
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.003 Score=70.14 Aligned_cols=241 Identities=12% Similarity=0.093 Sum_probs=137.6
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc--cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
..+..+.|+--|.+|||....-| +|-||+..+...+-... -.....++.||||+++.+..+++ +|.+++.
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klg----QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg----KVKvWn~ 379 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLG----QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG----KVKVWNT 379 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccc----eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC----cEEEEec
Confidence 35667788888999999887655 68888876655432111 11245689999997666665443 4777777
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc-e-eeEEeecCCEEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-V-DTAASHRGNHFFIT 346 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~-~~~~s~dg~~l~~~ 346 (758)
.++ -=...|++..... ..+.|+.+|+.|+-++-+ ++ |..+|+......+.++....- . ...++|.|. |+++
T Consensus 380 ~Sg--fC~vTFteHts~V-t~v~f~~~g~~llssSLD-Gt--VRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~A 452 (893)
T KOG0291|consen 380 QSG--FCFVTFTEHTSGV-TAVQFTARGNVLLSSSLD-GT--VRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCA 452 (893)
T ss_pred cCc--eEEEEeccCCCce-EEEEEEecCCEEEEeecC-Ce--EEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEe
Confidence 655 2244566655443 367899999887654443 33 344466543324444432221 1 123666676 5555
Q ss_pred EcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeecc
Q 004368 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFI 426 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p 426 (758)
...+ .+.|+++++.++.....+-.+...+.-..|++.++.|+-...+. .+++|++=...+.+ .++..+
T Consensus 453 G~~d---~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk---TVRiW~if~s~~~v------Etl~i~ 520 (893)
T KOG0291|consen 453 GAQD---SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK---TVRIWDIFSSSGTV------ETLEIR 520 (893)
T ss_pred eccc---eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc---eEEEEEeeccCcee------eeEeec
Confidence 4443 59999999987322222444443333335777777665443333 36667664221111 233332
Q ss_pred CcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCC
Q 004368 427 DPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMG 465 (758)
Q Consensus 427 ~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~ 465 (758)
. .+.++++.|++.++.+...+ .+|-.+|...+
T Consensus 521 s---dvl~vsfrPdG~elaVaTld----gqItf~d~~~~ 552 (893)
T KOG0291|consen 521 S---DVLAVSFRPDGKELAVATLD----GQITFFDIKEA 552 (893)
T ss_pred c---ceeEEEEcCCCCeEEEEEec----ceEEEEEhhhc
Confidence 2 23456778899998664432 35555665443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.015 Score=65.86 Aligned_cols=199 Identities=9% Similarity=0.070 Sum_probs=107.4
Q ss_pred EECCCCCEEEEEEeCC-CCeEEEEEEEECCCCceeecccc---CcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCC
Q 004368 197 QVSPDNKLVAYAEDTK-GDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~-G~e~~~l~v~dl~~g~~~~~~~~---~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
.++..++++|+..+.. |+....|.++++.....+. .+. +.+..++|+|+. .++++...+. .|.++++.++
T Consensus 33 ~ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~-~L~gH~~~V~~lafsP~~~~lLASgS~Dg----tIrIWDi~t~ 107 (568)
T PTZ00420 33 GIACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVI-KLKGHTSSILDLQFNPCFSEILASGSEDL----TIRVWEIPHN 107 (568)
T ss_pred eEeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEE-EEcCCCCCEEEEEEcCCCCCEEEEEeCCC----eEEEEECCCC
Confidence 3566788888887653 4445678888876554333 222 235668999984 6666654332 4677777643
Q ss_pred CC------CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEE
Q 004368 272 QS------NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFF 344 (758)
Q Consensus 272 ~~------~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~ 344 (758)
.. +....+... ......+.|+|++..+++++... ..|.++|+.++.....+. ....+. ..|+++|..|+
T Consensus 108 ~~~~~~i~~p~~~L~gH-~~~V~sVaf~P~g~~iLaSgS~D--gtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLa 183 (568)
T PTZ00420 108 DESVKEIKDPQCILKGH-KKKISIIDWNPMNYYIMCSSGFD--SFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLS 183 (568)
T ss_pred CccccccccceEEeecC-CCcEEEEEECCCCCeEEEEEeCC--CeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEE
Confidence 21 111223222 22334688999999887655443 346677887765222222 222232 34899999765
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeE-----EEeCCEEEEEEEeC-CeeEEEEEEcCC
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDI-----QLFIDHLAVYEREG-GLQKITTYRLPA 409 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~l~~~~~~~-g~~~l~v~~l~~ 409 (758)
..+ .+ ..|..+|+.+......+..+........+ +.+++.++.....+ ...++.+|++..
T Consensus 184 t~s-~D----~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 184 GTC-VG----KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEe-cC----CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 443 33 35777787653222223333322111112 12334554444332 224689999874
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00013 Score=71.25 Aligned_cols=101 Identities=11% Similarity=0.085 Sum_probs=64.1
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
+..++|||+|+.+|...... ...|.++|+++....... ......+.|||+| .++...... ....|.++++.+.
T Consensus 62 I~~~~WsP~g~~favi~g~~---~~~v~lyd~~~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n--~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSM---PAKVTLYDVKGKKIFSFG-TQPRNTISWSPDGRFLVLAGFGN--LNGDLEFWDVRKK 135 (194)
T ss_pred eEEEEECcCCCEEEEEEccC---CcccEEEcCcccEeEeec-CCCceEEEECCCCCEEEEEEccC--CCcEEEEEECCCC
Confidence 78899999999998776322 237889999743333221 2234568999999 555544432 2235777787633
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEec
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASE 304 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~ 304 (758)
..+...... ....+.|||||++++..+.
T Consensus 136 ----~~i~~~~~~-~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 136 ----KKISTFEHS-DATDVEWSPDGRYLATATT 163 (194)
T ss_pred ----EEeeccccC-cEEEEEEcCCCCEEEEEEe
Confidence 223322222 2457889999999987554
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0012 Score=67.70 Aligned_cols=193 Identities=17% Similarity=0.160 Sum_probs=112.3
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+..+.|+|++++|+.... ...|+++|+.+++.... .. ......+.|++++.++++...+ ..+..+++.+
T Consensus 54 i~~~~~~~~~~~l~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~i~~~~~~~ 124 (289)
T cd00200 54 VRDVAASADGTYLASGSS-----DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD----KTIKVWDVET 124 (289)
T ss_pred eeEEEECCCCCEEEEEcC-----CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCC----CeEEEEECCC
Confidence 467899999988877654 24799999988654432 21 2235668999998666665422 2477888875
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEEEcC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~ 349 (758)
. +....+.. .......+.++|++++|+... ....|+++|+.+++....+......+. ..|+++++.+++.+.
T Consensus 125 ~--~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 197 (289)
T cd00200 125 G--KCLTTLRG-HTDWVNSVAFSPDGTFVASSS---QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS- 197 (289)
T ss_pred c--EEEEEecc-CCCcEEEEEEcCcCCEEEEEc---CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-
Confidence 4 22333332 222334678999988776644 224578888876542333332222222 348899988877765
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+ ..|..+++........+..+. ..+..+.+..+ .+++....++ .+.+|++..
T Consensus 198 ~----~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~--~i~i~~~~~ 250 (289)
T cd00200 198 D----GTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPDGYLLASGSEDG--TIRVWDLRT 250 (289)
T ss_pred C----CcEEEEECCCCceecchhhcC--CceEEEEEcCCCcEEEEEcCCC--cEEEEEcCC
Confidence 2 357777775421111121222 24556666664 4444444355 377888763
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.011 Score=63.24 Aligned_cols=188 Identities=9% Similarity=0.062 Sum_probs=93.7
Q ss_pred EEEEEeCCCCeEEEEEEEECCC-Cceeec-cc--cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEee
Q 004368 205 VAYAEDTKGDEIYTVYVIDIET-GTPVGK-PL--VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYH 280 (758)
Q Consensus 205 lAy~~~~~G~e~~~l~v~dl~~-g~~~~~-~~--~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~ 280 (758)
.+|+....+ ..|.++|+.+ |+.... .+ .+....++++||++++|+.... ...+..+++.... .-..+-.
T Consensus 3 ~~y~~~~~~---~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~---~~~i~~~~~~~~g-~l~~~~~ 75 (330)
T PRK11028 3 IVYIASPES---QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP---EFRVLSYRIADDG-ALTFAAE 75 (330)
T ss_pred EEEEEcCCC---CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC---CCcEEEEEECCCC-ceEEeee
Confidence 456665433 4578888864 443321 22 2334558999999666665432 2346555664221 1111111
Q ss_pred ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCC-CC--ceEEeeccccc-eeeEEeecCCEEEEEEcCCCCCCcE
Q 004368 281 EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK-PE--ELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSE 356 (758)
Q Consensus 281 ~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~-~~--~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~ 356 (758)
.........+.++|||++|+..... ...|.++++++ +. ..........+ ....++|+|+++|+....+ ..
T Consensus 76 ~~~~~~p~~i~~~~~g~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~----~~ 149 (330)
T PRK11028 76 SPLPGSPTHISTDHQGRFLFSASYN--ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKE----DR 149 (330)
T ss_pred ecCCCCceEEEECCCCCEEEEEEcC--CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCC----CE
Confidence 1111122357899999998876543 34556666643 21 11111111111 2234899998877654432 45
Q ss_pred EEEEeCCCCCcce------eeecCCCCceeeeEE--EeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 357 LLACPVDNTSETT------VLIPHRESVKLQDIQ--LFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 357 L~~~~~~~~~~~~------~l~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
|..+++++.+... .-++... ....+. ++++++++.. .+...+.+|+++.
T Consensus 150 v~v~d~~~~g~l~~~~~~~~~~~~g~--~p~~~~~~pdg~~lyv~~--~~~~~v~v~~~~~ 206 (330)
T PRK11028 150 IRLFTLSDDGHLVAQEPAEVTTVEGA--GPRHMVFHPNQQYAYCVN--ELNSSVDVWQLKD 206 (330)
T ss_pred EEEEEECCCCcccccCCCceecCCCC--CCceEEECCCCCEEEEEe--cCCCEEEEEEEeC
Confidence 7777765422110 0111221 123344 4444555443 3345688888874
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00076 Score=68.94 Aligned_cols=120 Identities=20% Similarity=0.163 Sum_probs=67.9
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
+-..++||||++|| .|+...++++||+.|..+.. +..+ -.-.++||||| .|+--+.+. .+.+++-
T Consensus 118 Vl~~~fsp~g~~l~-----tGsGD~TvR~WD~~TeTp~~-t~KgH~~WVlcvawsPDgk~iASG~~dg-----~I~lwdp 186 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLV-----TGSGDTTVRLWDLDTETPLF-TCKGHKNWVLCVAWSPDGKKIASGSKDG-----SIRLWDP 186 (480)
T ss_pred EEEEEecCCCceEE-----ecCCCceEEeeccCCCCcce-eecCCccEEEEEEECCCcchhhccccCC-----eEEEecC
Confidence 33569999999998 45557999999999877654 3333 25668999999 565433332 4667776
Q ss_pred CCCCCCcEEEeeecCCceeeEEEE-----cCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQA-----SESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR 328 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~-----S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~ 328 (758)
.+++..-. .+.. ...+...++| .|..++|+ +++..++ +.++|+..+.....+...
T Consensus 187 ktg~~~g~-~l~g-H~K~It~Lawep~hl~p~~r~la-s~skDg~--vrIWd~~~~~~~~~lsgH 246 (480)
T KOG0271|consen 187 KTGQQIGR-ALRG-HKKWITALAWEPLHLVPPCRRLA-SSSKDGS--VRIWDTKLGTCVRTLSGH 246 (480)
T ss_pred CCCCcccc-cccC-cccceeEEeecccccCCCcccee-cccCCCC--EEEEEccCceEEEEeccC
Confidence 55543111 2222 2334445555 45666543 2333333 344455443323333333
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0004 Score=74.66 Aligned_cols=103 Identities=20% Similarity=0.236 Sum_probs=66.5
Q ss_pred CCCCEEEE----ecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHc
Q 004368 514 GSDPLLLY----GYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 589 (758)
Q Consensus 514 ~~~P~vl~----~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 589 (758)
.+.|.||. +|| +|...... ...+-..+..|.-|..+-+.-..+-| +++.|+..+....+++
T Consensus 67 ~krP~vViDPRAGHG-pGIGGFK~-dSevG~AL~~GHPvYFV~F~p~P~pg-------------QTl~DV~~ae~~Fv~~ 131 (581)
T PF11339_consen 67 TKRPFVVIDPRAGHG-PGIGGFKP-DSEVGVALRAGHPVYFVGFFPEPEPG-------------QTLEDVMRAEAAFVEE 131 (581)
T ss_pred CCCCeEEeCCCCCCC-CCccCCCc-ccHHHHHHHcCCCeEEEEecCCCCCC-------------CcHHHHHHHHHHHHHH
Confidence 45787777 576 45544332 23444455568888777765433333 4678877764432221
Q ss_pred ---CCCCCCcEEEEEeChhHHHHHHHHhhCCCcee-EEEEcCCccc
Q 004368 590 ---CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK-AAVAAVPFVD 631 (758)
Q Consensus 590 ---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~-a~v~~~~~~d 631 (758)
-.-+..|..++|-+.||.+++.+++.+|+++. .+++.+|+.-
T Consensus 132 V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsy 177 (581)
T PF11339_consen 132 VAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSY 177 (581)
T ss_pred HHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCccc
Confidence 12233499999999999999999999999987 4455666543
|
Their function is unknown. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00015 Score=82.73 Aligned_cols=116 Identities=12% Similarity=0.107 Sum_probs=77.0
Q ss_pred EeeEEECCCCCEEEEEEeCC-------CCeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCCCCCCceEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTK-------GDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAW 264 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~-------G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~ 264 (758)
+..|+|||||++|+|..+.+ .+...+|+++++++|+... .+++....+.||||| +++|+.. .+|+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~~------g~v~ 471 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMIIG------GKVY 471 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEEC------CEEE
Confidence 67899999999999887531 1224689999999888765 555557779999999 8999872 2577
Q ss_pred E---EEcCCCCCCcEEE-----eeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 265 L---HKLEADQSNDICL-----YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 265 ~---~~l~~~~~~~~~v-----~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
. .+.+.+ + ..+ +......-..++.|..|++ |++... .....+|.+++++..
T Consensus 472 Va~Vvr~~~G--~-~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~-~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 472 LAVVEQTEDG--Q-YALTNPREVGPGLGDTAVSLDWRTGDS-LVVGRS-DPEHPVWYVNLDGSN 530 (591)
T ss_pred EEEEEeCCCC--c-eeecccEEeecccCCccccceEecCCE-EEEEec-CCCCceEEEecCCcc
Confidence 6 333333 2 222 1111111124578999998 444433 345679999998754
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.6e-05 Score=79.09 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=76.6
Q ss_pred CCCEEEEecCCCccCCCCCCChHH---HHHHHc-CcEEEEEecCCCC--------------------CCchhHHhccccc
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSR---LSLLDR-GFIFAIAQIRGGG--------------------ELGRQWYENGKFL 570 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~---~~l~~~-G~~v~~~~~RG~g--------------------~~G~~~~~~~~~~ 570 (758)
+.+-||.+||...+. .-|.... ...+.. ++-++.+|-+--- +-...|......
T Consensus 3 ~k~riLcLHG~~~na--~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~- 79 (212)
T PF03959_consen 3 RKPRILCLHGYGQNA--EIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDD- 79 (212)
T ss_dssp ---EEEEE--TT--H--HHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S--
T ss_pred CCceEEEeCCCCcCH--HHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCC-
Confidence 457899999943322 2232222 233344 8888888754211 111233332211
Q ss_pred CCcChHhHHHHHHHHH----HHcCCCCCCcEEEEEeChhHHHHHHHHhhC--------CCceeEEEEcCCccchhhccCC
Q 004368 571 KKKNTFTDFIACAEYL----IKNCYCTKEKLCIEGRSAGGLLIGAVLNMR--------PDLFKAAVAAVPFVDVLTTMLD 638 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l----~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~--------p~~f~a~v~~~~~~d~~~~~~~ 638 (758)
.....++..++++| .++|- -.||+|+|.||.+++.++.+. ...|+.+|+.+++.-....
T Consensus 80 --~~~~~~~~~sl~~l~~~i~~~GP----fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--- 150 (212)
T PF03959_consen 80 --DHEYEGLDESLDYLRDYIEENGP----FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--- 150 (212)
T ss_dssp --SGGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE----
T ss_pred --cccccCHHHHHHHHHHHHHhcCC----eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh---
Confidence 22345555555554 33342 479999999999988777531 2257888888886421100
Q ss_pred CCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEec
Q 004368 639 PTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718 (758)
Q Consensus 639 ~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~ 718 (758)
+.....-.++++| +|-++|.+|+.+++..++++++..... .+. +..
T Consensus 151 ---------------------------~~~~~~~~~i~iP-tlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v-~~h-- 196 (212)
T PF03959_consen 151 ---------------------------YQELYDEPKISIP-TLHVIGENDPVVPPERSEALAEMFDPD---ARV-IEH-- 196 (212)
T ss_dssp ---------------------------GTTTT--TT---E-EEEEEETT-SSS-HHHHHHHHHHHHHH---EEE-EEE--
T ss_pred ---------------------------hhhhhccccCCCC-eEEEEeCCCCCcchHHHHHHHHhccCC---cEE-EEE--
Confidence 0000012234677 888899999999999999999888764 222 222
Q ss_pred CCCCCCCCCC
Q 004368 719 LGAGHFSKSG 728 (758)
Q Consensus 719 ~~~gH~~~~~ 728 (758)
+.||.....
T Consensus 197 -~gGH~vP~~ 205 (212)
T PF03959_consen 197 -DGGHHVPRK 205 (212)
T ss_dssp -SSSSS----
T ss_pred -CCCCcCcCC
Confidence 789987543
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.1e-05 Score=77.99 Aligned_cols=237 Identities=16% Similarity=0.130 Sum_probs=122.4
Q ss_pred eEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChH
Q 004368 497 TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF 576 (758)
Q Consensus 497 ~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~ 576 (758)
..+.+.+..|++. ...++.|++++.||....... .......++..++.++..+....++.+...+... ......
T Consensus 31 ~~~~~~l~~p~~~-~~~~~~p~v~~~h~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~ 104 (299)
T COG1073 31 IALAAVLHLPPSG-NEEKKLPAVVFLHGFGSSKEQ--SLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLA---DSEGYA 104 (299)
T ss_pred ceeeeEEEecCCC-CccccCceEEeccCccccccC--cchHHHHhhhceeEEeeecccccccccccccccc---Cccccc
Confidence 4577778888875 444689999999995433322 2225677888888877776521111111100000 000000
Q ss_pred hHHHHHHHHHHH---------cCCCCCCcEEEEEeChhHHHHHHHHhhCCC---ceeEEEEcCCc-----cchhhc----
Q 004368 577 TDFIACAEYLIK---------NCYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAVPF-----VDVLTT---- 635 (758)
Q Consensus 577 ~D~~~~~~~l~~---------~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~~~-----~d~~~~---- 635 (758)
.++......... ......++....|.+.||..+...+...+. ..+.++...++ +.....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~~~ 184 (299)
T COG1073 105 EDFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPEL 184 (299)
T ss_pred cccchhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccchHH
Confidence 111111111100 011223678888888888887777776652 22222222111 110000
Q ss_pred cCC------CCCCCChh--hhhccCCCCCHHHHHHHHhcCcccccCCCC-CCeEEEeccCCCCCCCChHHHHHHHHHHhc
Q 004368 636 MLD------PTIPLTTA--EWEEWGDPWKEEFYFYMKSYSPVDNVKAQN-YPHILVTAGLNDPRVMYSEPAKFVAKLREM 706 (758)
Q Consensus 636 ~~~------~~~~~~~~--~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~-~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~ 706 (758)
... ........ ....+..+... ...+...++...+.++. .| +|++||..|..||..++.+++.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~i~~~P-~l~~~G~~D~~vp~~~~~~~~~~~~~~ 261 (299)
T COG1073 185 ARELIDYLITPGGFAPLPAPEAPLDTLPLR--AVLLLLLDPFDDAEKISPRP-VLLVHGERDEVVPLRDAEDLYEAARER 261 (299)
T ss_pred HHhhhhhhccCCCCCCCCcccccccccccc--hhhhccCcchhhHhhcCCcc-eEEEecCCCcccchhhhHHHHhhhccC
Confidence 000 00000000 00000111111 12345667777777775 57 999999999999999999999998875
Q ss_pred CCCCceEEEEecCCCCCCCCC-ChHHHHHHHHHHHHHHHHhc
Q 004368 707 KTDDNILLFKCELGAGHFSKS-GRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 707 ~~~~~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~~~fl~~~l 747 (758)
+.+.++++ +.+|.... ......+...++..||.+++
T Consensus 262 --~~~~~~~~---~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 262 --PKKLLFVP---GGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred --CceEEEec---CCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 44455665 77787653 22322233445678888765
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.4e-05 Score=87.47 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=67.5
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchh--HH-----hcc---c---------ccCCcCh
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ--WY-----ENG---K---------FLKKKNT 575 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~--~~-----~~~---~---------~~~~~~~ 575 (758)
..|+||++||-.+.. ..|...+..|+++||.|+.+|+||+|+.... +. ... . +.+-.+.
T Consensus 448 g~P~VVllHG~~g~~--~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~ 525 (792)
T TIGR03502 448 GWPVVIYQHGITGAK--ENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQS 525 (792)
T ss_pred CCcEEEEeCCCCCCH--HHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHH
Confidence 468999999955433 2355666788889999999999999976322 00 000 0 1122455
Q ss_pred HhHHHHHHHHHH------Hc----CCCCCCcEEEEEeChhHHHHHHHHhh
Q 004368 576 FTDFIACAEYLI------KN----CYCTKEKLCIEGRSAGGLLIGAVLNM 615 (758)
Q Consensus 576 ~~D~~~~~~~l~------~~----~~~d~~~i~i~G~S~GG~l~~~~~~~ 615 (758)
+.|+......|. .+ +-.+..++.++|||+||++...++..
T Consensus 526 v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 526 ILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 677777777665 11 12456899999999999998877764
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00052 Score=65.88 Aligned_cols=184 Identities=17% Similarity=0.152 Sum_probs=108.1
Q ss_pred CCCEEEEecCCCccCCCCCCChHH---HHHHHcCcEEEEEecCC------C----C----------CC-chhHHhccc-c
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSR---LSLLDRGFIFAIAQIRG------G----G----------EL-GRQWYENGK-F 569 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~---~~l~~~G~~v~~~~~RG------~----g----------~~-G~~~~~~~~-~ 569 (758)
+.|-||++|| -......|+.-. ..++.+=+-.+.++-+- . + +. -..|..... .
T Consensus 4 ~k~rvLcLHG--frQsg~~F~~Ktg~~rK~l~k~~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~~ 81 (230)
T KOG2551|consen 4 KKLRVLCLHG--FRQSGKVFSEKTGSLRKLLKKLAELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEAS 81 (230)
T ss_pred CCceEEEecc--hhhccHHHHHHhhhHHHHHHhhheEEecCCCccCCcccCCcccccccccCCcccccchhhhhcccccc
Confidence 4578999999 333344454322 22222225555555441 0 0 11 134554433 2
Q ss_pred cCCcChHhH-HHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC--CC------ceeEEEEcCCccchhhccCCCC
Q 004368 570 LKKKNTFTD-FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR--PD------LFKAAVAAVPFVDVLTTMLDPT 640 (758)
Q Consensus 570 ~~~~~~~~D-~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~------~f~a~v~~~~~~d~~~~~~~~~ 640 (758)
......++. +....+|+.++|-.| ||.|+|.|+.|++.+++.. .. -|+-+|..+|+.-.
T Consensus 82 ~~~~~~~eesl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~-------- 149 (230)
T KOG2551|consen 82 FTEYFGFEESLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFP-------- 149 (230)
T ss_pred cccccChHHHHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCC--------
Confidence 223333444 555667888888876 8999999999999988821 11 36777777775321
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCC
Q 004368 641 IPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 720 (758)
Q Consensus 641 ~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 720 (758)
+.+.+... ....+++| .|-+.|+.|..||...+..+++....+ .++.. .
T Consensus 150 -----------~~~~~~~~-----------~~~~i~~P-SLHi~G~~D~iv~~~~s~~L~~~~~~a-----~vl~H---p 198 (230)
T KOG2551|consen 150 -----------SKKLDESA-----------YKRPLSTP-SLHIFGETDTIVPSERSEQLAESFKDA-----TVLEH---P 198 (230)
T ss_pred -----------cchhhhhh-----------hccCCCCC-eeEEecccceeecchHHHHHHHhcCCC-----eEEec---C
Confidence 00001111 12245788 788889999999999999999987654 33443 7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhc
Q 004368 721 AGHFSKSGRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 721 ~gH~~~~~~~~~~~~~~~~~~fl~~~l 747 (758)
+||...... ...+. +.+||...+
T Consensus 199 ggH~VP~~~-~~~~~---i~~fi~~~~ 221 (230)
T KOG2551|consen 199 GGHIVPNKA-KYKEK---IADFIQSFL 221 (230)
T ss_pred CCccCCCch-HHHHH---HHHHHHHHH
Confidence 899876544 33333 456665543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0017 Score=63.32 Aligned_cols=177 Identities=13% Similarity=0.107 Sum_probs=97.6
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQS 273 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~ 273 (758)
...|||||++++++... -.|-++|..+-+.... ...-......|.-++.+||.+..- ..-++. .-.+-
T Consensus 111 ~i~wsp~g~~~~~~~kd-----D~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl--G~v~IL--sypsL-- 179 (313)
T KOG1407|consen 111 NITWSPDGEYIAVGNKD-----DRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL--GCVEIL--SYPSL-- 179 (313)
T ss_pred EEEEcCCCCEEEEecCc-----ccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC--ceEEEE--ecccc--
Confidence 56899999999986542 3577778776665542 222224568898777677765432 122222 22211
Q ss_pred CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEEEcCCCC
Q 004368 274 NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRRSDEL 352 (758)
Q Consensus 274 ~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~ 352 (758)
+.+.-.. ..+.-.+.+.++|||||+++.+.+. -+-++|++.---.+.+......+. ..||+||+.|+-.+.+
T Consensus 180 kpv~si~-AH~snCicI~f~p~GryfA~GsADA---lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED--- 252 (313)
T KOG1407|consen 180 KPVQSIK-AHPSNCICIEFDPDGRYFATGSADA---LVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED--- 252 (313)
T ss_pred ccccccc-cCCcceEEEEECCCCceEeeccccc---eeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc---
Confidence 1221111 2334455788999999998865542 234556653222334433333343 3599999977755432
Q ss_pred CCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEE
Q 004368 353 FNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYE 394 (758)
Q Consensus 353 ~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 394 (758)
.-|-.+.+++ +..-|-++.... .-.+.|..++.++.+
T Consensus 253 --h~IDIA~vet-Gd~~~eI~~~~~--t~tVAWHPk~~LLAy 289 (313)
T KOG1407|consen 253 --HFIDIAEVET-GDRVWEIPCEGP--TFTVAWHPKRPLLAY 289 (313)
T ss_pred --ceEEeEeccc-CCeEEEeeccCC--ceeEEecCCCceeeE
Confidence 2344445555 345565555433 235666666544443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0029 Score=71.58 Aligned_cols=158 Identities=11% Similarity=0.079 Sum_probs=89.9
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
.+..+.|+|++..++.+...+| .|.|||+.+++.... .......+++|+|||.++.++..+ ..|.++++.+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~Dg----tIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D----~~IrIwD~Rs 198 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDS----FVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVG----KHMHIIDPRK 198 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCC----eEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecC----CEEEEEECCC
Confidence 5778999999998766654444 799999999875432 223345679999999554444322 2477888876
Q ss_pred CCCCcEEEeeecCCce----eeEEEEcCCCcEEEEEecCC-cceEEEEEeCCCCC-ceEEeec-cccc-eeeEEeecCCE
Q 004368 271 DQSNDICLYHEKDDIY----SLGLQASESKKFLFIASESK-ITRFVFYLDVSKPE-ELRVLTP-RVVG-VDTAASHRGNH 342 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~----~~~~~~S~Dg~~l~~~s~~~-~~~~l~~~d~~~~~-~~~~l~~-~~~~-~~~~~s~dg~~ 342 (758)
+. ....+....... .....+++|+++|+....+. ..+.|.++|+.+.. .+..+.- ...+ ....++++.+.
T Consensus 199 g~--~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 199 QE--IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred Cc--EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence 52 222333222211 11123568999887665544 33578888987533 2322211 1112 22345666555
Q ss_pred EEEEEcCCCCCCcEEEEEeCC
Q 004368 343 FFITRRSDELFNSELLACPVD 363 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~ 363 (758)
+|+....+ ..+..+++.
T Consensus 277 l~lsGkGD----~tIr~~e~~ 293 (568)
T PTZ00420 277 IYLIGKGD----GNCRYYQHS 293 (568)
T ss_pred EEEEEECC----CeEEEEEcc
Confidence 55444333 345555553
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0037 Score=64.05 Aligned_cols=65 Identities=26% Similarity=0.381 Sum_probs=47.6
Q ss_pred eEEeecccccCCC---C-eEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCc---ceeEEEec
Q 004368 176 HLILDENVKAEGR---G-FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV---TASVEWAG 245 (758)
Q Consensus 176 ~vllD~n~~~~~~---~-~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~---~~~~~wsp 245 (758)
--|.|+++..+-+ | +..+-.++|||||++|| .|....+|.+||.++|+..-.++.+. +.+++|-|
T Consensus 139 vR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iA-----SG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep 210 (480)
T KOG0271|consen 139 VRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIA-----SGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEP 210 (480)
T ss_pred EEeeccCCCCcceeecCCccEEEEEEECCCcchhh-----ccccCCeEEEecCCCCCcccccccCcccceeEEeecc
Confidence 4568887765322 2 34778899999999999 45555689999999998876566543 56689965
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00024 Score=74.22 Aligned_cols=199 Identities=13% Similarity=0.165 Sum_probs=116.8
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
-++..+.+|||+++||+.-. ...|+++...|++.... .+++....+.|+.||+.++.....+ +||.++|+
T Consensus 304 ~~~e~FeVShd~~fia~~G~-----~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~G----eV~v~nl~ 374 (514)
T KOG2055|consen 304 KSMERFEVSHDSNFIAIAGN-----NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTG----EVYVWNLR 374 (514)
T ss_pred chhheeEecCCCCeEEEccc-----CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCc----eEEEEecC
Confidence 47788999999999987533 34699999999987653 6788888899999994444433222 69999998
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeC--CCCCceEEeecc---cccee-eEEeecCCEE
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV--SKPEELRVLTPR---VVGVD-TAASHRGNHF 343 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~--~~~~~~~~l~~~---~~~~~-~~~s~dg~~l 343 (758)
.. .-+..|.....-...++..|.+|+|++..+.+. --.||-.+. .+. .++++..- ...+. ..|+||++.|
T Consensus 375 ~~--~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G-iVNIYd~~s~~~s~-~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 375 QN--SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG-IVNIYDGNSCFAST-NPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred Cc--ceEEEEeecCccceeeeeecCCCceEEeccCcc-eEEEeccchhhccC-CCCchhhhhhhheeeeeeeeCcchhhh
Confidence 76 333445444444455677899999888755442 234443221 111 23443221 11222 3499999999
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceee--eEEEeCCEEEEEEEeCCeeEEEEEEc
Q 004368 344 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQ--DIQLFIDHLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~l~v~~l 407 (758)
++.++.. ....+|+-++--+ --.+|-.....-..+. +|++.+.++. ..++.|. +.+|.|
T Consensus 451 AiaS~~~-knalrLVHvPS~T-VFsNfP~~n~~vg~vtc~aFSP~sG~lA-vGNe~gr--v~l~kL 511 (514)
T KOG2055|consen 451 AIASRVK-KNALRLVHVPSCT-VFSNFPTSNTKVGHVTCMAFSPNSGYLA-VGNEAGR--VHLFKL 511 (514)
T ss_pred hhhhhcc-ccceEEEecccee-eeccCCCCCCcccceEEEEecCCCceEE-eecCCCc--eeeEee
Confidence 9998875 3345666554322 1123322222111233 3444444554 4455554 445554
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00025 Score=70.97 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=84.0
Q ss_pred EEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec--cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 196 ~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
..+||+|++||-.++ +.+.|+|..|=+..++ -+.. +..+.|+.|+ .++.....+. .|....+...
T Consensus 14 c~fSp~g~yiAs~~~------yrlviRd~~tlq~~qlf~cldk-i~yieW~ads~~ilC~~yk~~----~vqvwsl~Qp- 81 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR------YRLVIRDSETLQLHQLFLCLDK-IVYIEWKADSCHILCVAYKDP----KVQVWSLVQP- 81 (447)
T ss_pred eeECCCCCeeeeeee------eEEEEeccchhhHHHHHHHHHH-hhheeeeccceeeeeeeeccc----eEEEEEeecc-
Confidence 478999999997764 7899999988766654 2233 3448999999 6666655432 2444555433
Q ss_pred CCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEee-ccccceeeEEeecCCEEEEEEcCC
Q 004368 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-PRVVGVDTAASHRGNHFFITRRSD 350 (758)
Q Consensus 273 ~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~-~~~~~~~~~~s~dg~~l~~~s~~~ 350 (758)
+-..-.+++... ...++||||||.|+..+.=. .+|-+..+.+.+ -..+. +...--.+.+.+||+..++.+.++
T Consensus 82 -ew~ckIdeg~ag-ls~~~WSPdgrhiL~tseF~--lriTVWSL~t~~-~~~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 82 -EWYCKIDEGQAG-LSSISWSPDGRHILLTSEFD--LRITVWSLNTQK-GYLLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred -eeEEEeccCCCc-ceeeeECCCcceEeeeecce--eEEEEEEeccce-eEEecccccCceeEEECCCCceeeeeeccc
Confidence 222222332222 33678999999998765433 333344444433 11111 111112456899999999998886
|
|
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00033 Score=74.05 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=107.4
Q ss_pred HhHHHHHHHHHHHcCCCCC--CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccch-hhccCCCCCCC---------
Q 004368 576 FTDFIACAEYLIKNCYCTK--EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDV-LTTMLDPTIPL--------- 643 (758)
Q Consensus 576 ~~D~~~~~~~l~~~~~~d~--~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~-~~~~~~~~~~~--------- 643 (758)
..|++.|+.+|.+.-.... -++.++|+|+||||+..++--.|.+|.+++-.++.+-. +++.....+.+
T Consensus 163 AiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~~ 242 (403)
T PF11144_consen 163 AIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGEF 242 (403)
T ss_pred HHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccccccccc
Confidence 4688888888887733333 48999999999999999999999999999977765432 22211111110
Q ss_pred -----------Chhhh-hccCCCC--CHHHHHHHHhcCcccccC---CC-CCCeEEEeccCCCCCCCChHHHHHHHHHHh
Q 004368 644 -----------TTAEW-EEWGDPW--KEEFYFYMKSYSPVDNVK---AQ-NYPHILVTAGLNDPRVMYSEPAKFVAKLRE 705 (758)
Q Consensus 644 -----------~~~~~-~e~g~p~--~~~~~~~l~~~sp~~~i~---~~-~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~ 705 (758)
....| ..-+.|. .++.+ .+|...-..++. +. +-|-....|+..|+.+|+.+-.+++..|++
T Consensus 243 ~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~-~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~ 321 (403)
T PF11144_consen 243 FNFKNIRIYCFDKTFWTRNKNSPYYFSKARY-IIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKN 321 (403)
T ss_pred cccCCEEEEEEeccccccCCCCccccChHHH-HHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHH
Confidence 00011 1112331 22222 233321112111 11 234456679999999999999999999999
Q ss_pred cCCCCceEEEEec--------CCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 004368 706 MKTDDNILLFKCE--------LGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVGS 755 (758)
Q Consensus 706 ~~~~~~~~~~~~~--------~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~ 755 (758)
.|-++++.+++.+ .+-.|+.+..-...++. ++.-+++.+........
T Consensus 322 lgfda~l~lIkdes~iDGkfIKnl~HGmgis~k~Lf~K---eLp~~lek~~~~~~~~~ 376 (403)
T PF11144_consen 322 LGFDATLHLIKDESEIDGKFIKNLEHGMGISDKALFKK---ELPLMLEKLQGRKSKMC 376 (403)
T ss_pred cCCCeEEEEecChhhccchheeccccCCCCCHHHHHHH---HhHHHHHHhhccccccc
Confidence 9999988888321 14567766554444433 46666666654444333
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00057 Score=76.03 Aligned_cols=194 Identities=15% Similarity=0.103 Sum_probs=111.1
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCc--ceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV--TASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~--~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+.+.++|||.++|. +.+|..++++|.+.+-.-+..--... ...+.|+|-|. ||.+. ..++-.+||..+-
T Consensus 453 PVyg~sFsPd~rfLl-----ScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy-YFata-s~D~tArLWs~d~- 524 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLL-----SCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY-YFATA-SHDQTARLWSTDH- 524 (707)
T ss_pred ceeeeeeccccccee-----eccCCcceeeeecccceeEEEecCCCcceeeEEecCCce-EEEec-CCCceeeeeeccc-
Confidence 456789999999986 34456788889888866544211111 44578899883 33333 2234446775432
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEEc
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRR 348 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~ 348 (758)
.....+|...-.... .+.+.|+..|++-.+. +. .+.++|..+|...+.++.+..-+.. .+||+|++|+-.
T Consensus 525 ---~~PlRifaghlsDV~-cv~FHPNs~Y~aTGSs-D~--tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg-- 595 (707)
T KOG0263|consen 525 ---NKPLRIFAGHLSDVD-CVSFHPNSNYVATGSS-DR--TVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASG-- 595 (707)
T ss_pred ---CCchhhhcccccccc-eEEECCcccccccCCC-Cc--eEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeec--
Confidence 234556654432221 3679999999765432 22 3455577666645555555444444 399999876543
Q ss_pred CCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+..+.|..+|+.+......+..+.. .+-++++..+.-++.. ..+...+.+|++.
T Consensus 596 ---~ed~~I~iWDl~~~~~v~~l~~Ht~--ti~SlsFS~dg~vLas-gg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 596 ---DEDGLIKIWDLANGSLVKQLKGHTG--TIYSLSFSRDGNVLAS-GGADNSVRLWDLT 649 (707)
T ss_pred ---ccCCcEEEEEcCCCcchhhhhcccC--ceeEEEEecCCCEEEe-cCCCCeEEEEEch
Confidence 2246788889876332223555533 3444444443333222 2334558888876
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.035 Score=54.98 Aligned_cols=197 Identities=14% Similarity=0.093 Sum_probs=113.1
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCC-----CceeeccccC---cceeEEEecCCeEEEEEeCCCCCCceE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-----GTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKA 263 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~-----g~~~~~~~~~---~~~~~~wspDg~l~y~~~~~~~~~~~v 263 (758)
.+...+..+++.-+.+..+++ -.+.+|+|.. |.+++ .+.+ ..+.++-|+||.+++...-+ ..+
T Consensus 17 ~Vt~la~~~~~~~~l~sasrD----k~ii~W~L~~dd~~~G~~~r-~~~GHsH~v~dv~~s~dg~~alS~swD----~~l 87 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRD----KTIIVWKLTSDDIKYGVPVR-RLTGHSHFVSDVVLSSDGNFALSASWD----GTL 87 (315)
T ss_pred eEEEEEeecCCCceEEEcccc----eEEEEEEeccCccccCceee-eeeccceEecceEEccCCceEEecccc----ceE
Confidence 455667777777777776653 4677777755 33333 3333 35678999999777665432 248
Q ss_pred EEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-ccceeeE-EeecCC
Q 004368 264 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVGVDTA-ASHRGN 341 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~-~s~dg~ 341 (758)
+++++.++ +....|... ..-.+++++|+|.+.|+-. ....+ |-+++.-+....+..... .+.+... |+|...
T Consensus 88 rlWDl~~g--~~t~~f~GH-~~dVlsva~s~dn~qivSG-SrDkT--iklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 88 RLWDLATG--ESTRRFVGH-TKDVLSVAFSTDNRQIVSG-SRDKT--IKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred EEEEecCC--cEEEEEEec-CCceEEEEecCCCceeecC-CCcce--eeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 88899887 345556543 3345688999999997632 22222 444455443212222111 2334443 899876
Q ss_pred EEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 342 HFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 342 ~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
..++++... ..-|-+.|+++....+-.+.+.....--.+++++.-+. ..-++| ++.+|+++.
T Consensus 162 ~p~Ivs~s~---DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslca-sGgkdg--~~~LwdL~~ 223 (315)
T KOG0279|consen 162 NPIIVSASW---DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCA-SGGKDG--EAMLWDLNE 223 (315)
T ss_pred CcEEEEccC---CceEEEEccCCcchhhccccccccEEEEEECCCCCEEe-cCCCCc--eEEEEEccC
Confidence 677776543 13455667766333333555554444444555554443 333444 467889884
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00044 Score=63.96 Aligned_cols=122 Identities=17% Similarity=0.246 Sum_probs=82.7
Q ss_pred cCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhh
Q 004368 570 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 649 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 649 (758)
.+....++|-++.++.-+.. -++.+.+++||.|+.+++..+.+.-..++++++.+|+ |+-+.+.
T Consensus 37 ~w~~P~~~dWi~~l~~~v~a---~~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVApp-d~~~~~~------------ 100 (181)
T COG3545 37 DWEAPVLDDWIARLEKEVNA---AEGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPP-DVSRPEI------------ 100 (181)
T ss_pred CCCCCCHHHHHHHHHHHHhc---cCCCeEEEEecccHHHHHHHHHhhhhccceEEEecCC-Ccccccc------------
Confidence 34456678888777655543 2566999999999999999998876678888888885 3222110
Q ss_pred ccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC
Q 004368 650 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 650 e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 726 (758)
.+ ..+..++|+... +...| .+++++.||+.|+++++..+++++-.. ++... ++||.+.
T Consensus 101 ------~~---~~~~tf~~~p~~-~lpfp-s~vvaSrnDp~~~~~~a~~~a~~wgs~-----lv~~g---~~GHiN~ 158 (181)
T COG3545 101 ------RP---KHLMTFDPIPRE-PLPFP-SVVVASRNDPYVSYEHAEDLANAWGSA-----LVDVG---EGGHINA 158 (181)
T ss_pred ------ch---hhccccCCCccc-cCCCc-eeEEEecCCCCCCHHHHHHHHHhccHh-----heecc---cccccch
Confidence 00 112234555433 33566 788899999999999999998887543 33343 6788654
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00026 Score=72.50 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=82.9
Q ss_pred eeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCC-----CCChHHHHHHH-cCcEEEEEecCCCCC
Q 004368 485 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-----AFNSSRLSLLD-RGFIFAIAQIRGGGE 558 (758)
Q Consensus 485 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~-----~~~~~~~~l~~-~G~~v~~~~~RG~g~ 558 (758)
.++++.+.. |+..|....+.-++. ++.-.||+.-|- +..... .....+..++. .|..|++.||||-|.
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a----~~~RWiL~s~GN-g~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~ 184 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEA----KPQRWILVSNGN-GECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGS 184 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCC----CCCcEEEEEcCC-hHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCcccc
Confidence 457777775 999999987764443 456678887663 222111 12334555655 599999999999764
Q ss_pred CchhHHhcccccCCcChHhHHHHHHHHHHHcC-CCCCCcEEEEEeChhHHHHHHHHhhC
Q 004368 559 LGRQWYENGKFLKKKNTFTDFIACAEYLIKNC-YCTKEKLCIEGRSAGGLLIGAVLNMR 616 (758)
Q Consensus 559 ~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~~ 616 (758)
+-. . .....-+.|..+|++||.++. .+.+++|.+.|+|.||.+++.++.++
T Consensus 185 S~G------~-~s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 185 STG------P-PSRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred CCC------C-CCHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 421 1 122345688899999998753 46899999999999999988877664
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0027 Score=71.09 Aligned_cols=197 Identities=18% Similarity=0.225 Sum_probs=109.9
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCc--eeeccccC---cceeEEEecCCeEEEEEeCCCCCCceEEE
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT--PVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWL 265 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~--~~~~~~~~---~~~~~~wspDg~l~y~~~~~~~~~~~v~~ 265 (758)
.++....+||||++++.+... ..++++++.+++ ... .+.+ .+..+.|||||+++....++ ..+++
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~-~l~~h~~~v~~~~fs~d~~~l~s~s~D----~tiri 229 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSD-----GLIRIWKLEGIKSNLLR-ELSGHTRGVSDVAFSPDGSYLLSGSDD----KTLRI 229 (456)
T ss_pred CceEEEEEcCCCCeEEEccCC-----CcEEEeecccccchhhc-cccccccceeeeEECCCCcEEEEecCC----ceEEE
Confidence 456668999999998876542 357778876666 322 2222 26679999999644444333 25777
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEE
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFF 344 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~ 344 (758)
+++.... .-..++. ....+..++.++|+|+ ++++.....+ |.++|+.+++..+.+......+.. .++++|..|+
T Consensus 230 wd~~~~~-~~~~~l~-gH~~~v~~~~f~p~g~-~i~Sgs~D~t--vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 230 WDLKDDG-RNLKTLK-GHSTYVTSVAFSPDGN-LLVSGSDDGT--VRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred eeccCCC-eEEEEec-CCCCceEEEEecCCCC-EEEEecCCCc--EEEEeccCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence 7873221 2233333 3444556788999995 4454444443 556677766534445555545443 4888888766
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCc--ceeeecCCCCceeeeEEEeCCEEEEEE-EeCCeeEEEEEEcCC
Q 004368 345 ITRRSDELFNSELLACPVDNTSE--TTVLIPHRESVKLQDIQLFIDHLAVYE-REGGLQKITTYRLPA 409 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~l~v~~l~~ 409 (758)
..+. + +.|..+|+.+... ...+........+..+.+..+..++.. ..++ .+.+|++..
T Consensus 305 s~s~-d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~--~~~~w~l~~ 365 (456)
T KOG0266|consen 305 SASY-D----GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR--TLKLWDLRS 365 (456)
T ss_pred EcCC-C----ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC--eEEEEEccC
Confidence 5522 2 4677778776321 111222222212334444444333332 2233 367777763
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00036 Score=70.79 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=66.0
Q ss_pred CeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc-c-cCcceeEEEecCC-eEEEEEeCCCCCCceEE-
Q 004368 189 GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-L-VGVTASVEWAGNE-ALVYITMDEILRPDKAW- 264 (758)
Q Consensus 189 ~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~-~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~- 264 (758)
|+.-+.+++|.+||..++=.+- | ...|.|||+++|.-.++. . .+.++-+.||||| .||..+.|.. ..||
T Consensus 194 gh~pVtsmqwn~dgt~l~tAS~--g--sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav---frlw~ 266 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILVTASF--G--SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV---FRLWQ 266 (445)
T ss_pred CCceeeEEEEcCCCCEEeeccc--C--cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce---eeeeh
Confidence 3456889999999999874443 3 367999999999877653 2 2235568999999 6766665542 3455
Q ss_pred EEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecC
Q 004368 265 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES 305 (758)
Q Consensus 265 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~ 305 (758)
.++.-+. +.. +... ...-...|||+|++|+|....
T Consensus 267 e~q~wt~--erw-~lgs---grvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 267 ENQSWTK--ERW-ILGS---GRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred hccccee--cce-eccC---CceeeeeecCCCCEEEEEEcC
Confidence 2222222 122 2211 122245699999999997643
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00035 Score=72.25 Aligned_cols=192 Identities=17% Similarity=0.132 Sum_probs=108.5
Q ss_pred EEeeEEECCC--CCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCC-eEEEEEeCCCCCCceEEE
Q 004368 192 SVGCFQVSPD--NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (758)
Q Consensus 192 ~i~~~~~SPD--G~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg-~l~y~~~~~~~~~~~v~~ 265 (758)
.++.+.|+|. +.-||=. .. ...+.+|++++.+++. .+++ ..+.++|.|+| .|.-.+.|..++ +
T Consensus 219 ~v~~~~fhP~~~~~~lat~-s~----Dgtvklw~~~~e~~l~-~l~gH~~RVs~VafHPsG~~L~TasfD~tWR---l-- 287 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATA-SA----DGTVKLWKLSQETPLQ-DLEGHLARVSRVAFHPSGKFLGTASFDSTWR---L-- 287 (459)
T ss_pred ceeeEEEccCCCccceeee-cc----CCceeeeccCCCcchh-hhhcchhhheeeeecCCCceeeecccccchh---h--
Confidence 5778899998 5555522 22 3468899998876665 3333 26779999999 555555666543 3
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEE
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFF 344 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~ 344 (758)
+++.++ .++++.++...-..+++|.+||.-+ .+..-....+|| |+.++...-.|......+. ..|||+|-+++
T Consensus 288 WD~~tk---~ElL~QEGHs~~v~~iaf~~DGSL~-~tGGlD~~~RvW--DlRtgr~im~L~gH~k~I~~V~fsPNGy~lA 361 (459)
T KOG0272|consen 288 WDLETK---SELLLQEGHSKGVFSIAFQPDGSLA-ATGGLDSLGRVW--DLRTGRCIMFLAGHIKEILSVAFSPNGYHLA 361 (459)
T ss_pred cccccc---hhhHhhcccccccceeEecCCCcee-eccCccchhhee--ecccCcEEEEecccccceeeEeECCCceEEe
Confidence 466665 3456666665555688999999754 333333345555 7777652223333333333 34999987665
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeecCCCC-ceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRES-VKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
--+.++ .-+| .|+..... .-++|...+ +.-..+++..+..++++..+...+ +|.-.
T Consensus 362 Tgs~Dn---t~kV--WDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~k--iWs~~ 418 (459)
T KOG0272|consen 362 TGSSDN---TCKV--WDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVK--IWSTR 418 (459)
T ss_pred ecCCCC---cEEE--eeeccccc-ceecccccchhhheEecccCCeEEEEcccCccee--eecCC
Confidence 443332 2344 45543212 124443322 222234444456666777666544 55433
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00027 Score=66.88 Aligned_cols=155 Identities=14% Similarity=0.184 Sum_probs=92.5
Q ss_pred HHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC
Q 004368 537 SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR 616 (758)
Q Consensus 537 ~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 616 (758)
....|+++|+.|+.+|-+ +-|.. ...-.....|+...+++..++.. .+++.++|.|+|+-++-.+.++-
T Consensus 21 ~a~~l~~~G~~VvGvdsl------~Yfw~---~rtP~~~a~Dl~~~i~~y~~~w~--~~~vvLiGYSFGADvlP~~~nrL 89 (192)
T PF06057_consen 21 IAEALAKQGVPVVGVDSL------RYFWS---ERTPEQTAADLARIIRHYRARWG--RKRVVLIGYSFGADVLPFIYNRL 89 (192)
T ss_pred HHHHHHHCCCeEEEechH------HHHhh---hCCHHHHHHHHHHHHHHHHHHhC--CceEEEEeecCCchhHHHHHhhC
Confidence 456899999999999954 11111 12223556888888888877754 48999999999999999999998
Q ss_pred CCce----eEEEEcCCccchhhccCCCCCCCChhhhhcc-CCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCC
Q 004368 617 PDLF----KAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRV 691 (758)
Q Consensus 617 p~~f----~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~-g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V 691 (758)
|... +.+++.+|- ... ++.... ..| |..... ..+.+..-++++...+++++.|..|.-.
T Consensus 90 p~~~r~~v~~v~Ll~p~----~~~---dFeihv---~~wlg~~~~~------~~~~~~pei~~l~~~~v~CiyG~~E~d~ 153 (192)
T PF06057_consen 90 PAALRARVAQVVLLSPS----TTA---DFEIHV---SGWLGMGGDD------AAYPVIPEIAKLPPAPVQCIYGEDEDDS 153 (192)
T ss_pred CHHHHhheeEEEEeccC----Ccc---eEEEEh---hhhcCCCCCc------ccCCchHHHHhCCCCeEEEEEcCCCCCC
Confidence 8644 444444442 110 110111 122 222111 1234444555664445999999887642
Q ss_pred CChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHH
Q 004368 692 MYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFE 731 (758)
Q Consensus 692 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~ 731 (758)
.. -.|+.. ..+.+.++ +||.+..+...
T Consensus 154 ~c-------p~l~~~--~~~~i~lp----GgHHfd~dy~~ 180 (192)
T PF06057_consen 154 LC-------PSLRQP--GVEVIALP----GGHHFDGDYDA 180 (192)
T ss_pred cC-------ccccCC--CcEEEEcC----CCcCCCCCHHH
Confidence 21 123332 45566664 77877655433
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0065 Score=68.13 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=90.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|+|++..+..+... ...|+|||+.+++.... . -.+....++|+|||.++++...+ ..|.++++.
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~----DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D----g~IrIwD~r 198 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGA----DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD----KKLNIIDPR 198 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeC----CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC----CEEEEEECC
Confidence 57788999997533333332 24799999999876542 1 12235669999999554554332 247788887
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecC-CcceEEEEEeCCCCC-ceEEeeccc-cce-eeEEeecCCEEEE
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES-KITRFVFYLDVSKPE-ELRVLTPRV-VGV-DTAASHRGNHFFI 345 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~-~~~~~l~~~d~~~~~-~~~~l~~~~-~~~-~~~~s~dg~~l~~ 345 (758)
++. ....+..........+.|.+++..|+....+ .....|.++|+.+.. ......... ... ...++++++.|++
T Consensus 199 sg~--~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~l 276 (493)
T PTZ00421 199 DGT--IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYI 276 (493)
T ss_pred CCc--EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEE
Confidence 652 2222222222222345688988776644432 234678888887644 222221111 112 2347889987776
Q ss_pred EEcCCCCCCcEEEEEeCCC
Q 004368 346 TRRSDELFNSELLACPVDN 364 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~ 364 (758)
....+ ..|..+++.+
T Consensus 277 ggkgD----g~Iriwdl~~ 291 (493)
T PTZ00421 277 GSKGE----GNIRCFELMN 291 (493)
T ss_pred EEeCC----CeEEEEEeeC
Confidence 65333 3455556544
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00064 Score=68.85 Aligned_cols=209 Identities=19% Similarity=0.162 Sum_probs=110.1
Q ss_pred EEEEecCCCccCCCCCCChHHHHHH-HcCcE--EEEEec--CCCCCCchhHHhcc-------cccCCc-----ChHhHHH
Q 004368 518 LLLYGYGSYEICNDPAFNSSRLSLL-DRGFI--FAIAQI--RGGGELGRQWYENG-------KFLKKK-----NTFTDFI 580 (758)
Q Consensus 518 ~vl~~hGg~~~~~~~~~~~~~~~l~-~~G~~--v~~~~~--RG~g~~G~~~~~~~-------~~~~~~-----~~~~D~~ 580 (758)
..||+||..+. ...|...+..+. ..|.+ ++.+++ -|.-.+...|.... ...... ....=+.
T Consensus 13 PTifihG~~gt--~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl~ 90 (255)
T PF06028_consen 13 PTIFIHGYGGT--ANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWLK 90 (255)
T ss_dssp EEEEE--TTGG--CCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHHH
T ss_pred cEEEECCCCCC--hhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHHH
Confidence 35567884443 445888888887 66544 444443 44333333332211 112222 1233456
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC------CCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCC
Q 004368 581 ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR------PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP 654 (758)
Q Consensus 581 ~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p 654 (758)
.++.+|.++..+ +++-++||||||..+...+..+ |.+=+.+.+..||-.........+. .....-| |
T Consensus 91 ~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~----~~~~~~g-p 163 (255)
T PF06028_consen 91 KVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQ----NDLNKNG-P 163 (255)
T ss_dssp HHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTT----T-CSTT--B
T ss_pred HHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchh----hhhcccC-C
Confidence 688888888665 8999999999999988888774 3344555566665443322111111 1112235 5
Q ss_pred -CCHHHHHHHHhc-CcccccCCCCCCeEEEeccC------CCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC
Q 004368 655 -WKEEFYFYMKSY-SPVDNVKAQNYPHILVTAGL------NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 655 -~~~~~~~~l~~~-sp~~~i~~~~~P~~Li~~G~------~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 726 (758)
...+.|+.|.+. . .++.+ .. .||-|.|. .|-+||...++.+..-++......+-+.+.- .++.|..-
T Consensus 164 ~~~~~~y~~l~~~~~--~~~p~-~i-~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G-~~a~HS~L 238 (255)
T PF06028_consen 164 KSMTPMYQDLLKNRR--KNFPK-NI-QVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTG-KDAQHSQL 238 (255)
T ss_dssp SS--HHHHHHHHTHG--GGSTT-T--EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEES-GGGSCCGG
T ss_pred cccCHHHHHHHHHHH--hhCCC-Ce-EEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEEC-CCCccccC
Confidence 344556665543 1 22222 23 38999998 8999999888877777766655556666652 24678654
Q ss_pred CChHHHHHHHHHHHHHH
Q 004368 727 SGRFERLREAAFTYTFL 743 (758)
Q Consensus 727 ~~~~~~~~~~~~~~~fl 743 (758)
....+..+. +..||
T Consensus 239 heN~~V~~~---I~~FL 252 (255)
T PF06028_consen 239 HENPQVDKL---IIQFL 252 (255)
T ss_dssp GCCHHHHHH---HHHHH
T ss_pred CCCHHHHHH---HHHHh
Confidence 334443333 35565
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.025 Score=66.49 Aligned_cols=204 Identities=9% Similarity=0.008 Sum_probs=115.0
Q ss_pred EEeCcEEEEEEecCCCeeEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecccccCCCCeEEEeeEEECCCCCEEEE
Q 004368 128 FRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAY 207 (758)
Q Consensus 128 ~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy 207 (758)
++.|.++.|.....|.+...++.+...++ ++|.++ +.. .. ..+.|++||+.|.|
T Consensus 135 Spdg~~la~~~d~~G~E~~~l~v~d~~tg-------------------~~l~~~--i~~----~~-~~~~w~~D~~~~~y 188 (686)
T PRK10115 135 TPDNTIMALAEDFLSRRQYGIRFRNLETG-------------------NWYPEL--LDN----VE-PSFVWANDSWTFYY 188 (686)
T ss_pred CCCCCEEEEEecCCCcEEEEEEEEECCCC-------------------CCCCcc--ccC----cc-eEEEEeeCCCEEEE
Confidence 46788888998888888887777655322 112221 111 11 34799999999999
Q ss_pred EEeCCC-CeEEEEEEEECCCCc--eeec-c-ccCcceeEEEec-CC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEee
Q 004368 208 AEDTKG-DEIYTVYVIDIETGT--PVGK-P-LVGVTASVEWAG-NE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYH 280 (758)
Q Consensus 208 ~~~~~G-~e~~~l~v~dl~~g~--~~~~-~-~~~~~~~~~wsp-Dg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~ 280 (758)
+....+ ....+||.+++.++. ...+ . ..+...-..|.+ |+ .++....... ..++++.+......+...+..
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~--~~~~~l~~~~~~~~~~~~~~~ 266 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASAT--TSEVLLLDAELADAEPFVFLP 266 (686)
T ss_pred EEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCc--cccEEEEECcCCCCCceEEEE
Confidence 987543 245789999999983 2221 1 111122134555 77 5543333222 234666664222122333433
Q ss_pred ecCCceeeEEEEcCCCcEEEEEecC-CcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEEEEcCCCCCCcEEE
Q 004368 281 EKDDIYSLGLQASESKKFLFIASES-KITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSELL 358 (758)
Q Consensus 281 ~~~~~~~~~~~~S~Dg~~l~~~s~~-~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~ 358 (758)
......+ .+. ..+..+++.++. .....|..+++.+...++.+.+...+ ....+...+++|++..+.++ ..+|+
T Consensus 267 ~~~~~~~-~~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g--~~~l~ 341 (686)
T PRK10115 267 RRKDHEY-SLD--HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRG--LTSLR 341 (686)
T ss_pred CCCCCEE-EEE--eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC--EEEEE
Confidence 3222222 222 223566666654 45578888888742237777766333 22234445788998888763 56788
Q ss_pred EEeCCC
Q 004368 359 ACPVDN 364 (758)
Q Consensus 359 ~~~~~~ 364 (758)
.++..+
T Consensus 342 ~~~~~~ 347 (686)
T PRK10115 342 QINRKT 347 (686)
T ss_pred EEcCCC
Confidence 888754
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0046 Score=65.82 Aligned_cols=215 Identities=12% Similarity=0.111 Sum_probs=129.8
Q ss_pred CceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc---c-CcceeEEEecCC--
Q 004368 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---V-GVTASVEWAGNE-- 247 (758)
Q Consensus 174 ~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~---~-~~~~~~~wspDg-- 247 (758)
.+.+++--+..++. +..-.-.+||-|.+++|+.+ | ..|+|.++ |+..-..++ . .....+.|||-|
T Consensus 117 sg~iv~sf~~~~q~--~~~Wp~~k~s~~D~y~ARvv---~---~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~ 187 (561)
T COG5354 117 SGMIVFSFNGISQP--YLGWPVLKFSIDDKYVARVV---G---SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNH 187 (561)
T ss_pred CceeEeeccccCCc--ccccceeeeeecchhhhhhc---c---CeEEEEec-CCccccCchhhccccceeeEEecCCCCC
Confidence 34555555555432 11111468999999999885 3 46889987 555433222 2 225668999985
Q ss_pred -eEEEEEeCCCCCCceEEEEEcCCCCCC-cEEEeeecCCceeeEEEEcCCCcEEEEEecCC--------cceEEEEEeCC
Q 004368 248 -ALVYITMDEILRPDKAWLHKLEADQSN-DICLYHEKDDIYSLGLQASESKKFLFIASESK--------ITRFVFYLDVS 317 (758)
Q Consensus 248 -~l~y~~~~~~~~~~~v~~~~l~~~~~~-~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~--------~~~~l~~~d~~ 317 (758)
.|+|.+....+.+..+.+..|+..... ...++.- ..+.+.|.+.|++|.+..... +.+.||++++.
T Consensus 188 ~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~----~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 188 DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV----SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee----cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 588887776777888888888744211 1112221 124578999999998765332 23789999998
Q ss_pred CCCceEEeeccccc-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEe
Q 004368 318 KPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYERE 396 (758)
Q Consensus 318 ~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 396 (758)
... .+......+- ..+.|+|+++.+.+++... -..+...++.+ ...-.+|++.... .-|++.+.++++..-.
T Consensus 264 e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~---pa~~s~~~lr~--Nl~~~~Pe~~rNT-~~fsp~~r~il~agF~ 336 (561)
T COG5354 264 ERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYM---PASVSVFDLRG--NLRFYFPEQKRNT-IFFSPHERYILFAGFD 336 (561)
T ss_pred ccc-cceeccccccceeeeecccCCceeEEeccc---ccceeeccccc--ceEEecCCccccc-ccccCcccEEEEecCC
Confidence 654 3333222222 3456999999999988543 23455666654 2333555554332 3566777777775555
Q ss_pred CCeeEEEEEEcC
Q 004368 397 GGLQKITTYRLP 408 (758)
Q Consensus 397 ~g~~~l~v~~l~ 408 (758)
+-...+.+++..
T Consensus 337 nl~gni~i~~~~ 348 (561)
T COG5354 337 NLQGNIEIFDPA 348 (561)
T ss_pred ccccceEEeccC
Confidence 544455566554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.015 Score=60.68 Aligned_cols=242 Identities=12% Similarity=0.040 Sum_probs=128.4
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSN 274 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~ 274 (758)
++.|-|+++.|.| +|-.| ..|+-++.++|+......++..++...-.++..+.+.... +++.+..++..
T Consensus 29 gP~w~~~~~~L~w-~DI~~---~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g------~~~~~~~~~~~- 97 (307)
T COG3386 29 GPVWDPDRGALLW-VDILG---GRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHG------VRLLDPDTGGK- 97 (307)
T ss_pred CccCcCCCCEEEE-EeCCC---CeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccc------cEEEeccCCce-
Confidence 6799999998855 45445 4788999988877665555544445444444333343322 44444433311
Q ss_pred cEEEeeec-C--CceeeEEEEcCCCcEEEEEecC---------CcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCC
Q 004368 275 DICLYHEK-D--DIYSLGLQASESKKFLFIASES---------KITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGN 341 (758)
Q Consensus 275 ~~~v~~~~-~--~~~~~~~~~S~Dg~~l~~~s~~---------~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~ 341 (758)
..++.+.. + ....-+....|||++- |.... ...-.||++|..+.. .+++...... -...|||||+
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~w-fgt~~~~~~~~~~~~~~G~lyr~~p~g~~-~~l~~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIW-FGDMGYFDLGKSEERPTGSLYRVDPDGGV-VRLLDDDLTIPNGLAFSPDGK 175 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEE-EeCCCccccCccccCCcceEEEEcCCCCE-EEeecCcEEecCceEECCCCC
Confidence 12222211 1 1111245578898764 44333 122479999985543 4443331111 1224999999
Q ss_pred EEEEEEcCCCCCCcEEEEEeCCC---C-Ccce-eeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCcccc
Q 004368 342 HFFITRRSDELFNSELLACPVDN---T-SETT-VLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKS 416 (758)
Q Consensus 342 ~l~~~s~~~~~~~~~L~~~~~~~---~-~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~ 416 (758)
.+|+.-.. ..+|++++++. . ...+ .+.-..+.....++..+.+..+.+....+-..+.+++.+ |+.+
T Consensus 176 tly~aDT~----~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~-- 247 (307)
T COG3386 176 TLYVADTP----ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLL-- 247 (307)
T ss_pred EEEEEeCC----CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEE--
Confidence 88887443 46899988752 1 1111 232222344567888888766554333332456677655 6643
Q ss_pred ccCCceeeccCcccccCCCCccc---CCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 417 LQGGKSVEFIDPVYSIDPSESVF---SSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 417 l~~~~~i~~p~~~~~i~~~~~~~---d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
..+.+|... + .+..+ +.++++++.+....+ ....-+..+|.
T Consensus 248 ----~~i~lP~~~--~--t~~~FgG~~~~~L~iTs~~~~~~-~~~~~~~~~G~ 291 (307)
T COG3386 248 ----GEIKLPVKR--P--TNPAFGGPDLNTLYITSARSGMS-RMLTADPLGGG 291 (307)
T ss_pred ----EEEECCCCC--C--ccceEeCCCcCEEEEEecCCCCC-ccccccccCce
Confidence 456666321 1 12223 357887777666555 33223333444
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0011 Score=66.06 Aligned_cols=197 Identities=15% Similarity=0.180 Sum_probs=103.1
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc-c---------cCcceeEEEecCC-eEEEEEeCCCCCCc
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-L---------VGVTASVEWAGNE-ALVYITMDEILRPD 261 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~---------~~~~~~~~wspDg-~l~y~~~~~~~~~~ 261 (758)
+....+||||++|+-. +-..-|-|||..+|+.+.+- . +...-.+.||.|+ .++-.+.|. .-
T Consensus 216 ~EcA~FSPDgqyLvsg-----SvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG---kI 287 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSG-----SVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG---KI 287 (508)
T ss_pred hhheeeCCCCceEeec-----cccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC---cE
Confidence 4566899999999843 33346889999999887431 1 1223446788887 443322222 23
Q ss_pred eEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce-eeEEeecC
Q 004368 262 KAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRG 340 (758)
Q Consensus 262 ~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg 340 (758)
+||+ +.+++ =..-|+.....-...+++|.|+..|+-.+.+.. +.+--+.+|+-++.+.....-+ +..+++||
T Consensus 288 KvWr--i~tG~--ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t---vRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 288 KVWR--IETGQ--CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT---VRIHGLKSGKCLKEFRGHSSYVNEATFTDDG 360 (508)
T ss_pred EEEE--Eecch--HHHHhhhhhccCeeEEEEccCcchhhcccccce---EEEeccccchhHHHhcCccccccceEEcCCC
Confidence 4554 55552 223344443333456789999999875444322 2333344444122222111111 22388999
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC---CEEEEEEEeCCeeEEEEEEcCCCCCcc
Q 004368 341 NHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI---DHLAVYEREGGLQKITTYRLPAVGEPL 414 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~l~v~~l~~~g~~~ 414 (758)
.++.-.+.++ .+-+++..+.+-....-+...+..+..+-+.. .++++.-+. +.++++++. |+-+
T Consensus 361 ~~iisaSsDg-----tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs---ntv~imn~q--GQvV 427 (508)
T KOG0275|consen 361 HHIISASSDG-----TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS---NTVYIMNMQ--GQVV 427 (508)
T ss_pred CeEEEecCCc-----cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC---CeEEEEecc--ceEE
Confidence 8877665543 23344444322222222333444555555543 355544333 347777776 6543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0092 Score=59.95 Aligned_cols=156 Identities=12% Similarity=0.159 Sum_probs=89.8
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
.+.++..||-+.... + ++..-+|++||+...+-.-. ...+ ..-.++.|.|-++.+..... .+.++++..
T Consensus 102 ~V~sL~~sP~~d~Fl--S---~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~----~IkLyD~Rs 171 (311)
T KOG1446|consen 102 RVNSLSVSPKDDTFL--S---SSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSE----LIKLYDLRS 171 (311)
T ss_pred eEEEEEecCCCCeEE--e---cccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCC----eEEEEEecc
Confidence 567788888775432 2 33346899999986554332 2222 22368999984444443321 355556543
Q ss_pred CCCCcEEEe--eecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec--cccc--eeeEEeecCCEEE
Q 004368 271 DQSNDICLY--HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP--RVVG--VDTAASHRGNHFF 344 (758)
Q Consensus 271 ~~~~~~~v~--~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~--~~~~--~~~~~s~dg~~l~ 344 (758)
-...+-..| ..++..-+-.+.+|||||+|+++.+. +.++++|.=+|.....+.. .... ....++|||+.++
T Consensus 172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~---s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl 248 (311)
T KOG1446|consen 172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA---SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVL 248 (311)
T ss_pred cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEE
Confidence 322233333 22222223478899999999997653 4589999877761111211 1111 3455899999655
Q ss_pred EEEcCCCCCCcEEEEEeCCCC
Q 004368 345 ITRRSDELFNSELLACPVDNT 365 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~ 365 (758)
..++ +++|..++++++
T Consensus 249 ~gs~-----dg~i~vw~~~tg 264 (311)
T KOG1446|consen 249 SGSD-----DGTIHVWNLETG 264 (311)
T ss_pred EecC-----CCcEEEEEcCCC
Confidence 4333 256888888663
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.013 Score=57.75 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=89.0
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCc---ceeEEEecCCeEEEEEeCCCCCCceEEEE
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV---TASVEWAGNEALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~---~~~~~wspDg~l~y~~~~~~~~~~~v~~~ 266 (758)
.++.+++|||.|++||-.+- ..+.-|+.-..++..-. ++++- .-.++||++|.++.+...+ ..||+.
T Consensus 62 rsVRsvAwsp~g~~La~aSF-----D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD----KSVWiW 132 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASF-----DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRD----KSVWIW 132 (312)
T ss_pred heeeeeeecCCCcEEEEeec-----cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC----CeEEEE
Confidence 57899999999999986543 34555665555655433 45543 4458999999544444322 259998
Q ss_pred EcCCCCCCc-EEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEe---eccccceee-EEeecCC
Q 004368 267 KLEADQSND-ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL---TPRVVGVDT-AASHRGN 341 (758)
Q Consensus 267 ~l~~~~~~~-~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l---~~~~~~~~~-~~s~dg~ 341 (758)
.+..+.+-+ .-++++.... .-.+.|.|--. |+++.+-.++-.+|.-+. +.. +..+ ..+...+.. .|++.|.
T Consensus 133 e~deddEfec~aVL~~HtqD-VK~V~WHPt~d-lL~S~SYDnTIk~~~~~~-ddd-W~c~~tl~g~~~TVW~~~F~~~G~ 208 (312)
T KOG0645|consen 133 EIDEDDEFECIAVLQEHTQD-VKHVIWHPTED-LLFSCSYDNTIKVYRDED-DDD-WECVQTLDGHENTVWSLAFDNIGS 208 (312)
T ss_pred EecCCCcEEEEeeecccccc-ccEEEEcCCcc-eeEEeccCCeEEEEeecC-CCC-eeEEEEecCccceEEEEEecCCCc
Confidence 887543211 1233332221 11456888543 455555555556665544 333 4333 222222222 3788888
Q ss_pred EEEEEEcCCCCCCcEEEE--EeC
Q 004368 342 HFFITRRSDELFNSELLA--CPV 362 (758)
Q Consensus 342 ~l~~~s~~~~~~~~~L~~--~~~ 362 (758)
++.-.+++. +.+|++ +++
T Consensus 209 rl~s~sdD~---tv~Iw~~~~~~ 228 (312)
T KOG0645|consen 209 RLVSCSDDG---TVSIWRLYTDL 228 (312)
T ss_pred eEEEecCCc---ceEeeeeccCc
Confidence 887776654 467777 454
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=9.5e-05 Score=85.05 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=83.0
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC-CCC--ChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccc
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAF--NSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 569 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~-~~~--~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~ 569 (758)
+.|- +.+-++.|+.. ...+ .|++|++|||.-.... ..| ......+..+..+|+.++||-| -+| |...+..
T Consensus 93 sEDC--LylNV~tp~~~-~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG-~lG--F~st~d~ 165 (545)
T KOG1516|consen 93 SEDC--LYLNVYTPQGC-SESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLG-PLG--FLSTGDS 165 (545)
T ss_pred cCCC--ceEEEeccCCC-ccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccce-ece--eeecCCC
Confidence 4454 44445556554 2213 8999999998332222 222 2223455567899999999964 122 2111111
Q ss_pred c-CCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhh--CCCceeEEEEcCCc
Q 004368 570 L-KKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPF 629 (758)
Q Consensus 570 ~-~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~~ 629 (758)
. .+-..+.|.+.|++|+.++ -..||++|.++|+|+||..+..++.- ...+|+.+|..+|.
T Consensus 166 ~~~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 166 AAPGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 1 2334567999999999665 33699999999999999988766653 12588888888774
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.025 Score=60.34 Aligned_cols=257 Identities=14% Similarity=0.110 Sum_probs=134.7
Q ss_pred ccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCcee-----ec-ccc-CcceeEEEecCC-eEEEEE
Q 004368 182 NVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-----GK-PLV-GVTASVEWAGNE-ALVYIT 253 (758)
Q Consensus 182 n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~-----~~-~~~-~~~~~~~wspDg-~l~y~~ 253 (758)
+++.-.++.-.+....+-|.|-+++ .|+-.|+++.||+.+-... .+ +-+ ..+.++.||+.| .|+.++
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~-----sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFV-----SGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceee-----eccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 4444457788899999999999987 5666799999999874321 11 222 236679999999 877766
Q ss_pred eCCCCCCceEEEEEcCCCCCCcEEEeeec------------CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCc
Q 004368 254 MDEILRPDKAWLHKLEADQSNDICLYHEK------------DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE 321 (758)
Q Consensus 254 ~~~~~~~~~v~~~~l~~~~~~~~~v~~~~------------~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~ 321 (758)
.... ..+.+-.+- ...-+-.. .-.......|.|+.+-.++++...++-+||-++-....
T Consensus 234 g~aq-----akl~DRdG~---~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q- 304 (641)
T KOG0772|consen 234 GSAQ-----AKLLDRDGF---EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ- 304 (641)
T ss_pred cCcc-----eeEEccCCc---eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-
Confidence 4321 111121111 01111110 00111234699999999999888888888866544333
Q ss_pred eEEeeccccc------eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcc-eeee--cCCCCceeeeEEEeCCEEEE
Q 004368 322 LRVLTPRVVG------VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSET-TVLI--PHRESVKLQDIQLFIDHLAV 392 (758)
Q Consensus 322 ~~~l~~~~~~------~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~-~~l~--~~~~~~~~~~~~~~~~~l~~ 392 (758)
.+.+.++..+ ....|++||++|+-.... +.|-.++..+.... ...+ .+.....+..+.+.-+.-++
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D-----GSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD-----GSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCCcchhhhcccC-----CceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence 4444433222 234599999985543332 33444443221111 1112 12332234444444333333
Q ss_pred EEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCC---CCCEEEEEECCCC
Q 004368 393 YEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLR---TPPSVYDYDMDMG 465 (758)
Q Consensus 393 ~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~---~P~~i~~~d~~~~ 465 (758)
..+ .....+.+|+|..-.+.+.. ...++.+ +.-....++++.. ++++-+|.. +++.++-||..+-
T Consensus 380 lSR-g~D~tLKvWDLrq~kkpL~~-----~tgL~t~-~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 380 LSR-GFDDTLKVWDLRQFKKPLNV-----RTGLPTP-FPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTL 447 (641)
T ss_pred hhc-cCCCceeeeeccccccchhh-----hcCCCcc-CCCCccccCCCce-EEEecccccCCCCCceEEEEeccce
Confidence 333 33345889999854333211 1112111 1112233456654 445554432 4667888876543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.01 Score=64.25 Aligned_cols=175 Identities=17% Similarity=0.177 Sum_probs=91.1
Q ss_pred EEEEEECCCCceeec-cccC-cceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCC
Q 004368 218 TVYVIDIETGTPVGK-PLVG-VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASES 295 (758)
Q Consensus 218 ~l~v~dl~~g~~~~~-~~~~-~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~D 295 (758)
.|.|+|.++.+.+.. ...+ ....+.++|||+.+|+...+ ..|-.+++.+.+. +-+-.-.....++++|+|
T Consensus 17 ~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd----g~vsviD~~~~~~----v~~i~~G~~~~~i~~s~D 88 (369)
T PF02239_consen 17 SVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD----GTVSVIDLATGKV----VATIKVGGNPRGIAVSPD 88 (369)
T ss_dssp EEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT----SEEEEEETTSSSE----EEEEE-SSEEEEEEE--T
T ss_pred EEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC----CeEEEEECCcccE----EEEEecCCCcceEEEcCC
Confidence 799999999887753 2222 24557899999666776532 2588889887732 222122223346889999
Q ss_pred CcEEEEEecCCcceEEEEEeCCCCCceEEeeccc-c------ceee-EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCc
Q 004368 296 KKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-V------GVDT-AASHRGNHFFITRRSDELFNSELLACPVDNTSE 367 (758)
Q Consensus 296 g~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~-~------~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~ 367 (758)
|+++++... ....+.++|.++.+..+.+.... . .... ..+|.+..+++.-.+ ..+++.+|..+...
T Consensus 89 G~~~~v~n~--~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 89 GKYVYVANY--EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD----TGEIWVVDYSDPKN 162 (369)
T ss_dssp TTEEEEEEE--ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT----TTEEEEEETTTSSC
T ss_pred CCEEEEEec--CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc----CCeEEEEEeccccc
Confidence 999977543 33467889988876233332111 0 1111 245666654444333 35889998765322
Q ss_pred ce-eeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 368 TT-VLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 368 ~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
.. ..+.. ...+.+..++.+.-++....++...+.+++..
T Consensus 163 ~~~~~i~~--g~~~~D~~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 163 LKVTTIKV--GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp EEEEEEE----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred cceeeecc--cccccccccCcccceeeecccccceeEEEeec
Confidence 11 12222 22455666666533333334455577777765
|
... |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.013 Score=58.72 Aligned_cols=186 Identities=17% Similarity=0.183 Sum_probs=98.5
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
..+||+-|.+||.+... | .|.|+|+.|-.+-. .+.. ...+++||+||+++.++..+ ..+.++++-.+
T Consensus 28 ~~~Fs~~G~~lAvGc~n-G----~vvI~D~~T~~iar-~lsaH~~pi~sl~WS~dgr~LltsS~D----~si~lwDl~~g 97 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCAN-G----RVVIYDFDTFRIAR-MLSAHVRPITSLCWSRDGRKLLTSSRD----WSIKLWDLLKG 97 (405)
T ss_pred eEEeccCcceeeeeccC-C----cEEEEEccccchhh-hhhccccceeEEEecCCCCEeeeecCC----ceeEEEeccCC
Confidence 56999999999988763 3 58899998865433 2221 15679999999555554322 24667777665
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce---ee---EEeecCCEEEE
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV---DT---AASHRGNHFFI 345 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~---~~---~~s~dg~~l~~ 345 (758)
..-....|. .+- ....|.|-.+-.++..--... -+++++..+. .+.|....++. .. .+++.|++++.
T Consensus 98 s~l~rirf~--spv--~~~q~hp~k~n~~va~~~~~s--p~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 98 SPLKRIRFD--SPV--WGAQWHPRKRNKCVATIMEES--PVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred CceeEEEcc--Ccc--ceeeeccccCCeEEEEEecCC--cEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEE
Confidence 322222232 222 245577644433333221111 3667776654 44443333321 11 26777887765
Q ss_pred EEcCCCCCCcEEEEEeCCCCCccee--eecCCCCceeee--EEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 346 TRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQD--IQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~~~~~--l~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
-+.+ ++|..++.++.....+ ++... .+.. ++..++.+++...+. .++.|++.
T Consensus 171 GtsK-----Gkllv~~a~t~e~vas~rits~~---~IK~I~~s~~g~~liiNtsDR---vIR~ye~~ 226 (405)
T KOG1273|consen 171 GTSK-----GKLLVYDAETLECVASFRITSVQ---AIKQIIVSRKGRFLIINTSDR---VIRTYEIS 226 (405)
T ss_pred ecCc-----ceEEEEecchheeeeeeeechhe---eeeEEEEeccCcEEEEecCCc---eEEEEehh
Confidence 4433 5677777665322222 22211 2233 334455565554432 35666553
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.035 Score=66.96 Aligned_cols=193 Identities=11% Similarity=0.100 Sum_probs=104.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCc----ee-----eccccCcceeEEEecCC-eEEEEEeCCCCCCc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT----PV-----GKPLVGVTASVEWAGNE-ALVYITMDEILRPD 261 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~----~~-----~~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~ 261 (758)
.+..+.|+|||++||-+.. ...|+|||+.+.. .. ..........+.|++.. .++.+...+ .
T Consensus 485 ~V~~i~fs~dg~~latgg~-----D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~D----g 555 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGV-----NKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFE----G 555 (793)
T ss_pred cEEEEEECCCCCEEEEEeC-----CCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCC----C
Confidence 4677899999999885432 3468999975421 10 00111224568998864 444444322 2
Q ss_pred eEEEEEcCCCCCCcEEEeeecCCceeeEEEEcC-CCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEE-ee
Q 004368 262 KAWLHKLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAA-SH 338 (758)
Q Consensus 262 ~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~-Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~-s~ 338 (758)
.|.++++.++ +....+.... ....++.|+| |+..|+..+.+ ..|.++|+.++.....+... ..+. ..| ++
T Consensus 556 ~v~lWd~~~~--~~~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs~D---g~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~ 628 (793)
T PLN00181 556 VVQVWDVARS--QLVTEMKEHE-KRVWSIDYSSADPTLLASGSDD---GSVKLWSINQGVSIGTIKTK-ANICCVQFPSE 628 (793)
T ss_pred eEEEEECCCC--eEEEEecCCC-CCEEEEEEcCCCCCEEEEEcCC---CEEEEEECCCCcEEEEEecC-CCeEEEEEeCC
Confidence 4777788765 2333343332 3344788986 67766544332 34677787765522233222 2222 235 34
Q ss_pred cCCEEEEEEcCCCCCCcEEEEEeCCCCCcce-eeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 339 RGNHFFITRRSDELFNSELLACPVDNTSETT-VLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 339 dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+|..|+..+. + +.|..+|+....... .+..+. ..+..+.+.....+++...++. +.+|++..
T Consensus 629 ~g~~latgs~-d----g~I~iwD~~~~~~~~~~~~~h~--~~V~~v~f~~~~~lvs~s~D~~--ikiWd~~~ 691 (793)
T PLN00181 629 SGRSLAFGSA-D----HKVYYYDLRNPKLPLCTMIGHS--KTVSYVRFVDSSTLVSSSTDNT--LKLWDLSM 691 (793)
T ss_pred CCCEEEEEeC-C----CeEEEEECCCCCccceEecCCC--CCEEEEEEeCCCEEEEEECCCE--EEEEeCCC
Confidence 5665554432 2 467888876532111 133332 2345566655455556666664 77888763
|
|
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0003 Score=78.37 Aligned_cols=115 Identities=23% Similarity=0.208 Sum_probs=70.3
Q ss_pred CCEEEEecCCCccCCC-CCCChHHHHHHHc-CcEEEEEecCCCCCCc---hhHHhcccccCCcChHhHHHHHHHHHHHcC
Q 004368 516 DPLLLYGYGSYEICND-PAFNSSRLSLLDR-GFIFAIAQIRGGGELG---RQWYENGKFLKKKNTFTDFIACAEYLIKNC 590 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G---~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 590 (758)
.|++|++-| -+.... .........|+++ |-.+++...|-=|++- ..-.+.-+...-.+.+.|+..-++++..+-
T Consensus 29 gpifl~~gg-E~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~ 107 (434)
T PF05577_consen 29 GPIFLYIGG-EGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKY 107 (434)
T ss_dssp SEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECC-CCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 799998854 222111 0011233456654 9999999999655431 111111223344578899999999988653
Q ss_pred -CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccc
Q 004368 591 -YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 631 (758)
Q Consensus 591 -~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 631 (758)
..+..++.++|+||||.|++++-.++|++|.|+++.++.+.
T Consensus 108 ~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 108 NTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp TTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred cCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 34557999999999999999999999999999999887655
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.017 Score=56.59 Aligned_cols=226 Identities=12% Similarity=0.087 Sum_probs=114.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
++....|+|-..-+.++.. | .-.|.+||..+++.... ...+....+.||||| ++++...++ .|-..+..
T Consensus 66 svdql~w~~~~~d~~atas--~--dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD-----~it~id~r 136 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATAS--G--DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDD-----RITFIDAR 136 (313)
T ss_pred chhhheeCCCCCcceEEec--C--CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcc-----cEEEEEec
Confidence 5566778877666555544 2 24799999999887653 222223447999999 777765443 25454544
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEEc
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRR 348 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~ 348 (758)
+- ..+-++.-.-+...+.|.-++.. +|..+.-+.-+|.-++. -++.+-+..+..+... .++|+|++|+.-+.
T Consensus 137 ~~----~~~~~~~~~~e~ne~~w~~~nd~-Fflt~GlG~v~ILsyps--Lkpv~si~AH~snCicI~f~p~GryfA~GsA 209 (313)
T KOG1407|consen 137 TY----KIVNEEQFKFEVNEISWNNSNDL-FFLTNGLGCVEILSYPS--LKPVQSIKAHPSNCICIEFDPDGRYFATGSA 209 (313)
T ss_pred cc----ceeehhcccceeeeeeecCCCCE-EEEecCCceEEEEeccc--cccccccccCCcceEEEEECCCCceEeeccc
Confidence 32 12222222223335677766554 55555545555555542 2223444445444443 39999998776544
Q ss_pred CCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCc
Q 004368 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDP 428 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~ 428 (758)
+ .-+-..|++..--.+.+...+..+.-.+|+-++..|+ ..+++-. |.|-...+ |..+ .+|.-..+
T Consensus 210 D-----AlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA-SaSEDh~--IDIA~vet-Gd~~------~eI~~~~~ 274 (313)
T KOG1407|consen 210 D-----ALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA-SASEDHF--IDIAEVET-GDRV------WEIPCEGP 274 (313)
T ss_pred c-----ceeeccChhHhhhheeeccccCceEEEEeccCcceee-ccCccce--EEeEeccc-CCeE------EEeeccCC
Confidence 3 2344456543211222333333333334444444443 3333332 33444442 4422 23332222
Q ss_pred ccccCCCCcccCCcEEEEEEecC
Q 004368 429 VYSIDPSESVFSSRILRFHYSSL 451 (758)
Q Consensus 429 ~~~i~~~~~~~d~~~l~~~~sS~ 451 (758)
.++ +.+.+...-+.|..+..
T Consensus 275 t~t---VAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 275 TFT---VAWHPKRPLLAYACDDK 294 (313)
T ss_pred cee---EEecCCCceeeEEecCC
Confidence 222 45666666666655443
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00025 Score=57.86 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=51.5
Q ss_pred CeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcCh
Q 004368 496 GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNT 575 (758)
Q Consensus 496 G~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~ 575 (758)
|.+|......|++ .+..+|+++||-...+. .|...+..|+++||.|+..|.||+|.+.. . ....+.
T Consensus 1 G~~L~~~~w~p~~-----~~k~~v~i~HG~~eh~~--ry~~~a~~L~~~G~~V~~~D~rGhG~S~g------~-rg~~~~ 66 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-----PPKAVVVIVHGFGEHSG--RYAHLAEFLAEQGYAVFAYDHRGHGRSEG------K-RGHIDS 66 (79)
T ss_pred CcEEEEEEecCCC-----CCCEEEEEeCCcHHHHH--HHHHHHHHHHhCCCEEEEECCCcCCCCCC------c-ccccCC
Confidence 4566666544442 25789999999533222 47778889999999999999999998752 1 112345
Q ss_pred HhHHHHHHHHH
Q 004368 576 FTDFIACAEYL 586 (758)
Q Consensus 576 ~~D~~~~~~~l 586 (758)
++++++-+..+
T Consensus 67 ~~~~v~D~~~~ 77 (79)
T PF12146_consen 67 FDDYVDDLHQF 77 (79)
T ss_pred HHHHHHHHHHH
Confidence 66666555443
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.033 Score=54.89 Aligned_cols=153 Identities=15% Similarity=0.150 Sum_probs=84.6
Q ss_pred EEeeEEECCC-CCEEEEEEeCCCCeEEEEEEEECCCCceee--cccc----CcceeEEEecCC-eEEEEEeCCCCCCceE
Q 004368 192 SVGCFQVSPD-NKLVAYAEDTKGDEIYTVYVIDIETGTPVG--KPLV----GVTASVEWAGNE-ALVYITMDEILRPDKA 263 (758)
Q Consensus 192 ~i~~~~~SPD-G~~lAy~~~~~G~e~~~l~v~dl~~g~~~~--~~~~----~~~~~~~wspDg-~l~y~~~~~~~~~~~v 263 (758)
.+-.++|+|- |..|| .++....|+|+++.++.... ..+. ..+.+++|||.| .++-.++|.. +
T Consensus 16 r~W~~awhp~~g~ilA-----scg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t-----~ 85 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILA-----SCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT-----V 85 (312)
T ss_pred cEEEEEeccCCceEEE-----eecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce-----E
Confidence 4678899998 88665 23334679999987543321 1222 236679999999 5555555543 2
Q ss_pred EEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCC-C--ceEEeeccccceeeE-Eeec
Q 004368 264 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP-E--ELRVLTPRVVGVDTA-ASHR 339 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~-~--~~~~l~~~~~~~~~~-~s~d 339 (758)
.+..-..+.=+-+..+++.... .-.++||++|.+|+-.+-+ ..||+...+.. + -...|.++..++.-. |.|.
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnE-VK~Vaws~sG~~LATCSRD---KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENE-VKCVAWSASGNYLATCSRD---KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred EEeecCCCceeEEeeeeccccc-eeEEEEcCCCCEEEEeeCC---CeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 2222122211122233433322 2368899999999865433 23566555433 2 233455665555443 6665
Q ss_pred CCEEEEEEcCCCCCCcEEEEEe
Q 004368 340 GNHFFITRRSDELFNSELLACP 361 (758)
Q Consensus 340 g~~l~~~s~~~~~~~~~L~~~~ 361 (758)
.+ |+|....+ ..-++|+-+
T Consensus 162 ~d-lL~S~SYD--nTIk~~~~~ 180 (312)
T KOG0645|consen 162 ED-LLFSCSYD--NTIKVYRDE 180 (312)
T ss_pred cc-eeEEeccC--CeEEEEeec
Confidence 44 55555544 145677654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.026 Score=56.76 Aligned_cols=208 Identities=15% Similarity=0.103 Sum_probs=106.1
Q ss_pred eecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCcee-----ecccc-CcceeEEEecCC-eEEE
Q 004368 179 LDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-----GKPLV-GVTASVEWAGNE-ALVY 251 (758)
Q Consensus 179 lD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~-----~~~~~-~~~~~~~wspDg-~l~y 251 (758)
||.+.+.. |+ -.+..+.||-|||+||-..+ ...|++|+++.=+.. +..++ +....++|+||- .+++
T Consensus 77 l~~~~LKg-H~-~~vt~~~FsSdGK~lat~~~-----Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv 149 (420)
T KOG2096|consen 77 LNVSVLKG-HK-KEVTDVAFSSDGKKLATISG-----DRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVV 149 (420)
T ss_pred hhhhhhhc-cC-CceeeeEEcCCCceeEEEeC-----CceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEE
Confidence 46676653 42 35778899999999986654 246888888752211 11122 134568999998 6655
Q ss_pred EEeCCCCCCceEEEEEcCCCC--C-------CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCce
Q 004368 252 ITMDEILRPDKAWLHKLEADQ--S-------NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL 322 (758)
Q Consensus 252 ~~~~~~~~~~~v~~~~l~~~~--~-------~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~ 322 (758)
.... ...|+.+.+.... . .|-+-|++......+++.....+++|+-.+. ...|.++++.+.. +
T Consensus 150 ~~~~----g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~---dt~i~lw~lkGq~-L 221 (420)
T KOG2096|consen 150 SVKR----GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL---DTKICLWDLKGQL-L 221 (420)
T ss_pred EEcc----CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecC---CCcEEEEecCCce-e
Confidence 5432 2346555543211 0 1222233333323344555555666543322 2457888888543 4
Q ss_pred EEeecc-ccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcce---e---eecCCCCceeeeEEEeCC-EEEEEE
Q 004368 323 RVLTPR-VVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETT---V---LIPHRESVKLQDIQLFID-HLAVYE 394 (758)
Q Consensus 323 ~~l~~~-~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~---~---l~~~~~~~~~~~~~~~~~-~l~~~~ 394 (758)
.-+-.. ..+....+||+|+.++...- .+..+++-.=....+..+ . +-.+.. .+..+.+.++ .-.++.
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gF---TpDVkVwE~~f~kdG~fqev~rvf~LkGH~s--aV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGF---TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS--AVLAAAFSNSSTRAVTV 296 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecC---CCCceEEEEEeccCcchhhhhhhheeccchh--heeeeeeCCCcceeEEE
Confidence 433322 23344569999996655432 233444432211111111 1 222222 2334444443 334567
Q ss_pred EeCCeeEEEEEEcC
Q 004368 395 REGGLQKITTYRLP 408 (758)
Q Consensus 395 ~~~g~~~l~v~~l~ 408 (758)
+.+|. +++|+.+
T Consensus 297 SkDG~--wriwdtd 308 (420)
T KOG2096|consen 297 SKDGK--WRIWDTD 308 (420)
T ss_pred ecCCc--EEEeecc
Confidence 77886 4566655
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.041 Score=56.45 Aligned_cols=119 Identities=16% Similarity=0.236 Sum_probs=78.8
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec---cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~---~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
++....||.||.+|| .|+-...|.|+...+|..... +..+... +.|.|-+.|++....++ .||.+.+
T Consensus 108 SVt~~~FshdgtlLA-----TGdmsG~v~v~~~stg~~~~~~~~e~~dieW-l~WHp~a~illAG~~DG----svWmw~i 177 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLA-----TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEW-LKWHPRAHILLAGSTDG----SVWMWQI 177 (399)
T ss_pred ceEEEEEccCceEEE-----ecCCCccEEEEEcccCceEEEeecccCceEE-EEecccccEEEeecCCC----cEEEEEC
Confidence 678889999999998 344455799999999887642 2223334 68889775554443332 4999999
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEee
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT 326 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~ 326 (758)
... ....++......... -.++||||.|+....+ .-|.++++.++.+...+.
T Consensus 178 p~~--~~~kv~~Gh~~~ct~-G~f~pdGKr~~tgy~d---gti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 178 PSQ--ALCKVMSGHNSPCTC-GEFIPDGKRILTGYDD---GTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred CCc--ceeeEecCCCCCccc-ccccCCCceEEEEecC---ceEEEEecCCCceeEEec
Confidence 875 355677665544332 3589999998765442 336667787776333443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0056 Score=66.26 Aligned_cols=202 Identities=13% Similarity=0.141 Sum_probs=114.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC--eEEEEEeCCCCCCceEEEEE-
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE--ALVYITMDEILRPDKAWLHK- 267 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg--~l~y~~~~~~~~~~~v~~~~- 267 (758)
.+..+++.|-|.+|| .|++..+++||.+.||.-+.. .+.+.+..++|+|.+ .++.++.... +++.+
T Consensus 402 ~Vr~iSvdp~G~wla-----sGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-----~~ivnp 471 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLA-----SGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-----VLIVNP 471 (733)
T ss_pred eEEEEEecCCcceee-----ecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-----eEEeCc
Confidence 466789999999998 455567899999999986654 566677889999998 4555544321 11111
Q ss_pred -cC-------------CC---CCC--cEEEeeec--------------CCceeeEEEEcCCCcEEEEEecCCcceEEEEE
Q 004368 268 -LE-------------AD---QSN--DICLYHEK--------------DDIYSLGLQASESKKFLFIASESKITRFVFYL 314 (758)
Q Consensus 268 -l~-------------~~---~~~--~~~v~~~~--------------~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~ 314 (758)
+| +. ... .+..+... .+.-.-.+.|..+|.||+....+..+..|++.
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 00 00 000 00011100 01111257899999999988888888889999
Q ss_pred eCCCCCceEEeeccccceeeE-EeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEE
Q 004368 315 DVSKPEELRVLTPRVVGVDTA-ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVY 393 (758)
Q Consensus 315 d~~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 393 (758)
.+.......++.....-+... |.|..-+|++.|... |..+|+........+.+...-...-++++.||.|++.
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~------vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS------VRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred ecccccccCchhhcCCceeEEEecCCCceEEEEeccc------eEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 887654112222222223333 666555566655443 4445654311112233332222222344556888766
Q ss_pred EEeCCeeEEEEEEcCCCCC
Q 004368 394 EREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 394 ~~~~g~~~l~v~~l~~~g~ 412 (758)
... .++..++++.+.+
T Consensus 626 s~d---~k~~WfDldlssk 641 (733)
T KOG0650|consen 626 SYD---KKMCWFDLDLSSK 641 (733)
T ss_pred cCC---CeeEEEEcccCcc
Confidence 543 3477788887544
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.02 Score=61.00 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=101.2
Q ss_pred HHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcC-CccchhhccC------CCCCCCChhhhhccCCC--
Q 004368 584 EYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV-PFVDVLTTML------DPTIPLTTAEWEEWGDP-- 654 (758)
Q Consensus 584 ~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~-~~~d~~~~~~------~~~~~~~~~~~~e~g~p-- 654 (758)
+++.++...+.++.+|.|.|==|..+..+++ ...+++|++..+ +++|+...+. ....+.....|-.-|-.
T Consensus 161 ~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~ 239 (367)
T PF10142_consen 161 EFLKKKFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQ 239 (367)
T ss_pred HHHHhhcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhh
Confidence 3445555678899999999999998887777 456777776554 3344332210 00112222222222322
Q ss_pred -CCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHH
Q 004368 655 -WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERL 733 (758)
Q Consensus 655 -~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~ 733 (758)
..++..+.+.-.+|+...++...| -||+.|.+|+...+..+.-|+..|...+ .++..++.+|.... ....
T Consensus 240 l~tp~f~~L~~ivDP~~Y~~rL~~P-K~ii~atgDeFf~pD~~~~y~d~L~G~K------~lr~vPN~~H~~~~--~~~~ 310 (367)
T PF10142_consen 240 LDTPEFDKLMQIVDPYSYRDRLTMP-KYIINATGDEFFVPDSSNFYYDKLPGEK------YLRYVPNAGHSLIG--SDVV 310 (367)
T ss_pred cCCHHHHHHHHhcCHHHHHHhcCcc-EEEEecCCCceeccCchHHHHhhCCCCe------eEEeCCCCCcccch--HHHH
Confidence 355666667778999999999998 8999999999999999999999997532 23334599997653 3333
Q ss_pred HHHHHHHHHHHHhcCCC
Q 004368 734 REAAFTYTFLMRALSML 750 (758)
Q Consensus 734 ~~~~~~~~fl~~~l~~~ 750 (758)
+. ..+|+...+...
T Consensus 311 ~~---l~~f~~~~~~~~ 324 (367)
T PF10142_consen 311 QS---LRAFYNRIQNGR 324 (367)
T ss_pred HH---HHHHHHHHHcCC
Confidence 33 578888766444
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0035 Score=72.39 Aligned_cols=142 Identities=17% Similarity=0.190 Sum_probs=80.1
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCC----------Ccee------ec-ccc---CcceeEEEecCCeEE
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET----------GTPV------GK-PLV---GVTASVEWAGNEALV 250 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~----------g~~~------~~-~~~---~~~~~~~wspDg~l~ 250 (758)
.++.-+.|||||++||.+.| ..-|.||+.+. |... .. .+. +-+..+.|+||+.++
T Consensus 70 ~sv~CVR~S~dG~~lAsGSD-----D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSD-----DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL 144 (942)
T ss_pred CceeEEEECCCCCeEeeccC-----cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence 46778899999999997555 45677777662 1110 00 111 124568999999544
Q ss_pred E-EEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccc
Q 004368 251 Y-ITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV 329 (758)
Q Consensus 251 y-~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~ 329 (758)
. .+.|. .|.+++..+- +...++... ....-++.|.|-|+|++-.+.++ +-.||...- -+- .+.+++..
T Consensus 145 vS~s~Dn-----sViiwn~~tF--~~~~vl~~H-~s~VKGvs~DP~Gky~ASqsdDr-tikvwrt~d-w~i-~k~It~pf 213 (942)
T KOG0973|consen 145 VSVSLDN-----SVIIWNAKTF--ELLKVLRGH-QSLVKGVSWDPIGKYFASQSDDR-TLKVWRTSD-WGI-EKSITKPF 213 (942)
T ss_pred EEecccc-----eEEEEccccc--eeeeeeecc-cccccceEECCccCeeeeecCCc-eEEEEEccc-cee-eEeeccch
Confidence 3 33333 3666665554 233344332 33445789999999988665543 345555211 111 23333322
Q ss_pred cc---e----eeEEeecCCEEEEEEc
Q 004368 330 VG---V----DTAASHRGNHFFITRR 348 (758)
Q Consensus 330 ~~---~----~~~~s~dg~~l~~~s~ 348 (758)
+. . ...|||||++|.....
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhh
Confidence 21 1 1249999998875543
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0036 Score=59.21 Aligned_cols=118 Identities=18% Similarity=0.054 Sum_probs=66.9
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCC
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKA 674 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~ 674 (758)
++++++|.|.||+.|.+++.++. . -+|+.+|.+.+-..+.. -+... .+|. -..++..+.++ +
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~~-~ig~~----~~y~-~~~~~h~~eL~-------~-- 121 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENMEG-KIDRP----EEYA-DIATKCVTNFR-------E-- 121 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHHH-HhCCC----cchh-hhhHHHHHHhh-------h--
Confidence 46999999999999999999874 3 45566776665432211 01000 0111 11233333333 1
Q ss_pred CCCC-eEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 675 QNYP-HILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 675 ~~~P-~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
+-| ..+++..+.|.+.++.++.+.++.. .+.++. +|+.|.+. +-...+ ..+.+|+.
T Consensus 122 -~~p~r~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~---~GGdH~f~-~fe~~l---~~I~~F~~ 178 (180)
T PRK04940 122 -KNRDRCLVILSRNDEVLDSQRTAEELHPY------YEIVWD---EEQTHKFK-NISPHL---QRIKAFKT 178 (180)
T ss_pred -cCcccEEEEEeCCCcccCHHHHHHHhccC------ceEEEE---CCCCCCCC-CHHHHH---HHHHHHHh
Confidence 122 2677789999999988777665432 123334 37888653 222323 33567773
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0057 Score=65.98 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=55.1
Q ss_pred hHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhh
Q 004368 536 SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM 615 (758)
Q Consensus 536 ~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 615 (758)
.....|++ |+-|++.|-+--+.- ....+.-.++|.+..+...++. +-++ +-++|.|+||.+++++++.
T Consensus 121 S~V~~Ll~-g~dVYl~DW~~p~~v--------p~~~~~f~ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa~Al 188 (406)
T TIGR01849 121 STVEALLP-DHDVYITDWVNARMV--------PLSAGKFDLEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAAVAL 188 (406)
T ss_pred HHHHHHhC-CCcEEEEeCCCCCCC--------chhcCCCCHHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHHHHH
Confidence 34567888 999999986432211 0123445567777644433322 2345 9999999999987765554
Q ss_pred C-----CCceeEEEEcCCccch
Q 004368 616 R-----PDLFKAAVAAVPFVDV 632 (758)
Q Consensus 616 ~-----p~~f~a~v~~~~~~d~ 632 (758)
. |+..+.+++..+.+|.
T Consensus 189 ~a~~~~p~~~~sltlm~~PID~ 210 (406)
T TIGR01849 189 MAENEPPAQPRSMTLMGGPIDA 210 (406)
T ss_pred HHhcCCCCCcceEEEEecCccC
Confidence 3 5568888888877774
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.011 Score=57.60 Aligned_cols=196 Identities=14% Similarity=0.175 Sum_probs=109.2
Q ss_pred eEEECC--CCCEEEEEE-eC---CCCeEEEEEEEECCCCceeec--c--ccCcceeEEEecCC-eEEEEEeCCCCCCceE
Q 004368 195 CFQVSP--DNKLVAYAE-DT---KGDEIYTVYVIDIETGTPVGK--P--LVGVTASVEWAGNE-ALVYITMDEILRPDKA 263 (758)
Q Consensus 195 ~~~~SP--DG~~lAy~~-~~---~G~e~~~l~v~dl~~g~~~~~--~--~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v 263 (758)
++++|| +++ ||... .. .| ...|+|.+++.++-+++ . ..+....++||+.. .++++...++ .|
T Consensus 13 svqfSPf~~nr-LavAt~q~yGl~G--~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDG----SL 85 (311)
T KOG0277|consen 13 SVQFSPFVENR-LAVATAQHYGLAG--NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDG----SL 85 (311)
T ss_pred eeEecccccch-hheeehhhccccc--CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCc----eE
Confidence 457777 444 33332 21 23 35799999974443322 1 23334459999987 5666655332 25
Q ss_pred EEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeE--EeecCC
Q 004368 264 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTA--ASHRGN 341 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~--~s~dg~ 341 (758)
.+.+++.. +.++..|.|..... .++.|.+-.++.+++++-.++-+||..+... .++..... ....|. |+|.-.
T Consensus 86 rl~d~~~~-s~Pi~~~kEH~~EV-~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--Sv~Tf~gh-~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 86 RLFDLTMP-SKPIHKFKEHKREV-YSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--SVQTFNGH-NSCIYQAAFSPHIP 160 (311)
T ss_pred EEeccCCC-CcchhHHHhhhhhe-EEeccccccceeEEeeccCCceEeecCCCCc--ceEeecCC-ccEEEEEecCCCCC
Confidence 56665544 34666777654333 3778988888888877656667788666543 24443332 233343 887655
Q ss_pred EEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 342 HFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 342 ~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
.++..+..+ ..+-..|+..++....+..+..+..--+++-.+..++++...++. ++.|++.
T Consensus 161 nlfas~Sgd----~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~--vr~wDir 221 (311)
T KOG0277|consen 161 NLFASASGD----GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL--VRGWDIR 221 (311)
T ss_pred CeEEEccCC----ceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce--EEEEehh
Confidence 555444433 234445555544433333343233333444455677777666665 6778776
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.092 Score=53.96 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=94.4
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
++-.++++|+.+++| .|++.-.-++|++.+|+..-. + -++.+....||.||.++.+.. -.-+|.+++..
T Consensus 66 svFavsl~P~~~l~a-----TGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGd----msG~v~v~~~s 136 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVA-----TGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGD----MSGKVLVFKVS 136 (399)
T ss_pred ceEEEEeCCCCceEE-----ecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecC----CCccEEEEEcc
Confidence 566778999888776 455566789999999985432 1 123356689999997665543 22358888888
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEEc
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRR 348 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~ 348 (758)
++..+ ..++.+.+. . .-+.|.|-+..|+..+.+ ..+|.+.+..+...+.+......... .+.|||++++-...
T Consensus 137 tg~~~-~~~~~e~~d-i-eWl~WHp~a~illAG~~D---GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 137 TGGEQ-WKLDQEVED-I-EWLKWHPRAHILLAGSTD---GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred cCceE-EEeecccCc-e-EEEEecccccEEEeecCC---CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence 77432 223323222 1 135799988777765443 34677777664313333332222222 28899998876655
Q ss_pred CCCCCCcEEEEEeCCC
Q 004368 349 SDELFNSELLACPVDN 364 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~ 364 (758)
. +.|.+.++.+
T Consensus 211 d-----gti~~Wn~kt 221 (399)
T KOG0296|consen 211 D-----GTIIVWNPKT 221 (399)
T ss_pred C-----ceEEEEecCC
Confidence 3 4577777766
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.053 Score=59.42 Aligned_cols=246 Identities=13% Similarity=0.095 Sum_probs=134.8
Q ss_pred EeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-cCcceeEEEecCC-eEEEEEe
Q 004368 178 ILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNE-ALVYITM 254 (758)
Q Consensus 178 llD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~wspDg-~l~y~~~ 254 (758)
+||.-.+.. + +-..-+.|| -...||.+.. ..+|+|+..+|++..+ .+ .+.+.++.|+++| .|+.-..
T Consensus 168 vLDaP~l~d--D-fY~nlldWs-s~n~laValg------~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 168 VLDAPGLQD--D-FYLNLLDWS-SANVLAVALG------QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hccCCcccc--c-HhhhHhhcc-cCCeEEEEec------ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeec
Confidence 457555532 2 334567899 5667777663 5799999999997765 44 3446779999999 5554443
Q ss_pred CCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeeccccc-e
Q 004368 255 DEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVG-V 332 (758)
Q Consensus 255 ~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~-~ 332 (758)
+. .|.++++.... ...-+..........++|.. . ++.+..+. ..|...|+...+ ....+...... .
T Consensus 238 ~g-----~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~~---~-~lssGsr~-~~I~~~dvR~~~~~~~~~~~H~qeVC 305 (484)
T KOG0305|consen 238 DG-----TVQIWDVKEQK--KTRTLRGSHASRVGSLAWNS---S-VLSSGSRD-GKILNHDVRISQHVVSTLQGHRQEVC 305 (484)
T ss_pred CC-----eEEEEehhhcc--ccccccCCcCceeEEEeccC---c-eEEEecCC-CcEEEEEEecchhhhhhhhcccceee
Confidence 32 36677765542 22223331222333566762 1 22232222 234444554433 11212222222 2
Q ss_pred eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCC
Q 004368 333 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 333 ~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
...|++|+..++--.|+ ..++..|...+.....+..+...+..-.|++....|+.+.--.....+.+|+... |.
T Consensus 306 gLkws~d~~~lASGgnD-----N~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~ 379 (484)
T KOG0305|consen 306 GLKWSPDGNQLASGGND-----NVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GA 379 (484)
T ss_pred eeEECCCCCeeccCCCc-----cceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-Cc
Confidence 33499999977644333 4677777755444444777777776667777767776555433344677887763 33
Q ss_pred ccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEE
Q 004368 413 PLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDY 460 (758)
Q Consensus 413 ~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~ 460 (758)
. +.-.+....|.++.++...+++..++--...--+||.|
T Consensus 380 ~---------i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 380 R---------IDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred E---------ecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 2 22112222344556777777776655433332234444
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.034 Score=56.87 Aligned_cols=152 Identities=16% Similarity=0.080 Sum_probs=85.1
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
.+.++.+||||+.+|+.....+ ...|++....+....... ......+.|+++|.++...... ....+++ ...++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~--~~~L~~~~~~~~~~~~~~-g~~l~~PS~d~~g~~W~v~~~~--~~~~~~~-~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDG--GRSLYVGPAGGPVRPVLT-GGSLTRPSWDPDGWVWTVDDGS--GGVRVVR-DSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCC--CCEEEEEcCCCcceeecc-CCccccccccCCCCEEEEEcCC--CceEEEE-ecCCC
Confidence 4678899999999999983333 478999886554333322 2235668999999666554322 1122232 22222
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCC---CCC-----ceEEeecc-ccce-eeEEeecCC
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS---KPE-----ELRVLTPR-VVGV-DTAASHRGN 341 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~---~~~-----~~~~l~~~-~~~~-~~~~s~dg~ 341 (758)
......+-......-...+.+||||..+++.....+..+||+.-+. ++. .+..+... ...+ ...|.+++.
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 2222222111111123468899999999998877666788876543 221 11222211 1122 344887765
Q ss_pred EEEEEEcCC
Q 004368 342 HFFITRRSD 350 (758)
Q Consensus 342 ~l~~~s~~~ 350 (758)
|++++...
T Consensus 179 -L~V~~~~~ 186 (253)
T PF10647_consen 179 -LVVLGRSA 186 (253)
T ss_pred -EEEEeCCC
Confidence 66666554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.049 Score=55.83 Aligned_cols=197 Identities=11% Similarity=0.087 Sum_probs=108.2
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc--cCcceeEEEecCC-eEEEEEeCCC---------C
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEI---------L 258 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~wspDg-~l~y~~~~~~---------~ 258 (758)
..+..++|.+ ..++|.+-.+. -.|+|+|-....+..+.. -.....++|-|-+ +-+-+.-..+ .
T Consensus 99 ~dlr~~aWhq--H~~~fava~nd---dvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQ--HIIAFAVATND---DVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTL 173 (445)
T ss_pred cceeeEeech--hhhhhhhhccC---cEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccc
Confidence 3577888888 66677665433 467788776644433321 1225669999988 4333322211 0
Q ss_pred CCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEee-ccccceee-EE
Q 004368 259 RPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-PRVVGVDT-AA 336 (758)
Q Consensus 259 ~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~-~~~~~~~~-~~ 336 (758)
...+.. +.++. ....++..+......+..|.+||..++- .+-+.+.+.+.|.+++. -.+|. .+..++.. -|
T Consensus 174 n~~r~~--~~~s~--~~~qvl~~pgh~pVtsmqwn~dgt~l~t--AS~gsssi~iWdpdtg~-~~pL~~~glgg~slLkw 246 (445)
T KOG2139|consen 174 NANRNI--RMMST--HHLQVLQDPGHNPVTSMQWNEDGTILVT--ASFGSSSIMIWDPDTGQ-KIPLIPKGLGGFSLLKW 246 (445)
T ss_pred cccccc--ccccc--cchhheeCCCCceeeEEEEcCCCCEEee--cccCcceEEEEcCCCCC-cccccccCCCceeeEEE
Confidence 001111 11111 1223444444344456789999987654 34455677788888876 44444 34455544 49
Q ss_pred eecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcC
Q 004368 337 SHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 337 s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
||||++|+..+-+. .++|+...- .....+|+...+ .++...|+ +..|++.. .|.+.++-...+
T Consensus 247 SPdgd~lfaAt~da---vfrlw~e~q-~wt~erw~lgsg---rvqtacWspcGsfLLf~~--sgsp~lysl~f~ 311 (445)
T KOG2139|consen 247 SPDGDVLFAATCDA---VFRLWQENQ-SWTKERWILGSG---RVQTACWSPCGSFLLFAC--SGSPRLYSLTFD 311 (445)
T ss_pred cCCCCEEEEecccc---eeeeehhcc-cceecceeccCC---ceeeeeecCCCCEEEEEE--cCCceEEEEeec
Confidence 99999887776654 367774321 122356666554 45555555 55665554 355665544443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.058 Score=60.59 Aligned_cols=147 Identities=14% Similarity=0.050 Sum_probs=79.8
Q ss_pred EECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEE-eCCCCCCceEEEEEcCCCCCC
Q 004368 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYIT-MDEILRPDKAWLHKLEADQSN 274 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~-~~~~~~~~~v~~~~l~~~~~~ 274 (758)
=++|||+.|.-. ......+.++|.++.+.... .+++....+.++|||+.+|++ .+.. ....+-.++.+.. .
T Consensus 199 PlpnDGk~l~~~----~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE-~G~tl~em~a~e~--d 271 (635)
T PRK02888 199 PLPNDGKDLDDP----KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSE-EGVTLAEMMAAER--D 271 (635)
T ss_pred ccCCCCCEeecc----cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcc-cCcceeeeccccC--c
Confidence 468999977311 22346788899998776532 445555558999999544444 3322 2223333333221 1
Q ss_pred cEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCC----CCceEEeec-cccceeeEEeecCCEEEEEEcC
Q 004368 275 DICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK----PEELRVLTP-RVVGVDTAASHRGNHFFITRRS 349 (758)
Q Consensus 275 ~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~----~~~~~~l~~-~~~~~~~~~s~dg~~l~~~s~~ 349 (758)
...+|.-.. . -.+.+||++.++. .+.|-++|..+ +.......+ ...-....+||||+++|+....
T Consensus 272 ~~vvfni~~--i---ea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 272 WVVVFNIAR--I---EEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred eEEEEchHH--H---HHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCC
Confidence 222222111 0 1357899998872 45788999887 211222222 1111233489999987765433
Q ss_pred CCCCCcEEEEEeCCC
Q 004368 350 DELFNSELLACPVDN 364 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~ 364 (758)
+ ..+-++|++.
T Consensus 342 S----~tVSVIDv~k 352 (635)
T PRK02888 342 S----PTVTVIDVRK 352 (635)
T ss_pred C----CcEEEEEChh
Confidence 2 3455666644
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.035 Score=56.11 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=34.7
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc-CcceeEEEecCCeE
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV-GVTASVEWAGNEAL 249 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~-~~~~~~~wspDg~l 249 (758)
..+++..|||||+.|.-++.- ...|-||.|.+.+..-..-+ ...-+++|.|||++
T Consensus 92 agls~~~WSPdgrhiL~tseF----~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEF----DLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQF 147 (447)
T ss_pred CcceeeeECCCcceEeeeecc----eeEEEEEEeccceeEEecccccCceeEEECCCCce
Confidence 357788999999999866543 35677777776554332211 12344677777743
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.036 Score=64.33 Aligned_cols=119 Identities=11% Similarity=0.147 Sum_probs=76.6
Q ss_pred CCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC--cceeEEEecCC-eEEE-EEeCCCCCCceEEEEEcCCCCCCcEE
Q 004368 202 NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVY-ITMDEILRPDKAWLHKLEADQSNDIC 277 (758)
Q Consensus 202 G~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~wspDg-~l~y-~~~~~~~~~~~v~~~~l~~~~~~~~~ 277 (758)
..+|||..+..| +|.+.|.+++......+.. ..-.+.||||| +|+| ++.....+...||+++|.+.....+.
T Consensus 318 ~tkiAfv~~~~~----~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vk 393 (912)
T TIGR02171 318 KAKLAFRNDVTG----NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVK 393 (912)
T ss_pred eeeEEEEEcCCC----eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceE
Confidence 357899998655 8999999988776542332 24558999999 8999 66654334556999999887654333
Q ss_pred Eeeec--CCceeeEEEEcCCCcEEEEEecCCc---------ceEEEEEeCCCCC--ceEEeecc
Q 004368 278 LYHEK--DDIYSLGLQASESKKFLFIASESKI---------TRFVFYLDVSKPE--ELRVLTPR 328 (758)
Q Consensus 278 v~~~~--~~~~~~~~~~S~Dg~~l~~~s~~~~---------~~~l~~~d~~~~~--~~~~l~~~ 328 (758)
+--+. -|+| ...+.|..+++...+.+ ...-|.+....|+ .++.|..+
T Consensus 394 l~ve~aaiprw----rv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg~p~kl~dg 453 (912)
T TIGR02171 394 LPVENAAIPRW----RVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFGTPKKLFDG 453 (912)
T ss_pred eecccccccce----EecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCCCchhhhcc
Confidence 32221 2343 24677766554443211 1246888888877 56666543
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.036 Score=62.23 Aligned_cols=232 Identities=15% Similarity=0.164 Sum_probs=123.6
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCcee----------e--------------------ccc---cCcc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV----------G--------------------KPL---VGVT 238 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~----------~--------------------~~~---~~~~ 238 (758)
.+....+|+|++.||-... ...|++|.+...+.. . .++ .+.+
T Consensus 380 ~v~ca~fSddssmlA~Gf~-----dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFV-----DSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred cceeEeecCCcchhhcccc-----ccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 4566789999999885443 355666666532210 0 001 1113
Q ss_pred eeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCC
Q 004368 239 ASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (758)
Q Consensus 239 ~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~ 318 (758)
.+..|+||.+++..+..+. .+.++.+.+- .-.++|...... ...+.++|-|-|.+- .+...+.+||..|-..
T Consensus 455 yg~sFsPd~rfLlScSED~----svRLWsl~t~--s~~V~y~GH~~P-VwdV~F~P~GyYFat-as~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDS----SVRLWSLDTW--SCLVIYKGHLAP-VWDVQFAPRGYYFAT-ASHDQTARLWSTDHNK 526 (707)
T ss_pred eeeeecccccceeeccCCc----ceeeeecccc--eeEEEecCCCcc-eeeEEecCCceEEEe-cCCCceeeeeecccCC
Confidence 3468999986555543221 2445556654 345566544322 235678899876543 3444556888877643
Q ss_pred CCceEEeecccccee-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeec-CCCCceeeeEEEeCCEEEEEEEe
Q 004368 319 PEELRVLTPRVVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIP-HRESVKLQDIQLFIDHLAVYERE 396 (758)
Q Consensus 319 ~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~ 396 (758)
+.+.+.....++. +.|.|+..++ .+... ...+-.+|+.++ ....++. +...+....+++.|.+|+ ...+
T Consensus 527 --PlRifaghlsDV~cv~FHPNs~Y~--aTGSs---D~tVRlWDv~~G-~~VRiF~GH~~~V~al~~Sp~Gr~La-Sg~e 597 (707)
T KOG0263|consen 527 --PLRIFAGHLSDVDCVSFHPNSNYV--ATGSS---DRTVRLWDVSTG-NSVRIFTGHKGPVTALAFSPCGRYLA-SGDE 597 (707)
T ss_pred --chhhhcccccccceEEECCccccc--ccCCC---CceEEEEEcCCC-cEEEEecCCCCceEEEEEcCCCceEe-eccc
Confidence 4566666666666 4488877643 33322 234555676653 3334443 333333334445454554 3334
Q ss_pred CCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEE
Q 004368 397 GGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVY 458 (758)
Q Consensus 397 ~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~ 458 (758)
+| .|.+|++.. |..+. .+-++..++.+++++.|++.++ ..+...--++|
T Consensus 598 d~--~I~iWDl~~-~~~v~--------~l~~Ht~ti~SlsFS~dg~vLa--sgg~DnsV~lW 646 (707)
T KOG0263|consen 598 DG--LIKIWDLAN-GSLVK--------QLKGHTGTIYSLSFSRDGNVLA--SGGADNSVRLW 646 (707)
T ss_pred CC--cEEEEEcCC-Ccchh--------hhhcccCceeEEEEecCCCEEE--ecCCCCeEEEE
Confidence 44 377899874 33221 1222233455567788887653 34444444444
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.21 Score=50.05 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=103.0
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCce-eeccccCc-ceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGKPLVGV-TASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~-~~~~~~~~-~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
+..+.||+|.++|+=.+. +| .|.|||.-|..- ...+++.. +-.-++||.| .++.-..+. ...|| ++.
T Consensus 58 i~~~~ws~Dsr~ivSaSq-DG----klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN---~Csiy--~ls 127 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQ-DG----KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN---KCSIY--PLS 127 (343)
T ss_pred eeeeEecCCcCeEEeecc-CC----eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc---eeEEE--ecc
Confidence 567899999999974433 33 689999877543 33355544 4457999999 555444332 22344 444
Q ss_pred CCCCCc-EEE---eeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEee-cCCEE
Q 004368 270 ADQSND-ICL---YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASH-RGNHF 343 (758)
Q Consensus 270 ~~~~~~-~~v---~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~-dg~~l 343 (758)
+...+. ..+ +. ....|.....+.+|+..| -.+ +....-++|+++++..+.+..+..++.. .++| +++.+
T Consensus 128 ~~d~~g~~~v~r~l~-gHtgylScC~f~dD~~il-T~S---GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELA-GHTGYLSCCRFLDDNHIL-TGS---GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred cccccccceeeeeec-CccceeEEEEEcCCCceE-ecC---CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 331111 111 11 123344445677776543 222 2234566788887634444444444433 4778 66644
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEE-EEEEeCCeeEEEEEEcCC
Q 004368 344 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLA-VYEREGGLQKITTYRLPA 409 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~l~v~~l~~ 409 (758)
+ ...-+ ..-+..|+..+...+....++.+ +..+.++++... .+.++++. .++|++..
T Consensus 203 v-Sg~cD----~~aklWD~R~~~c~qtF~ghesD--INsv~ffP~G~afatGSDD~t--cRlyDlRa 260 (343)
T KOG0286|consen 203 V-SGGCD----KSAKLWDVRSGQCVQTFEGHESD--INSVRFFPSGDAFATGSDDAT--CRLYDLRA 260 (343)
T ss_pred E-ecccc----cceeeeeccCcceeEeecccccc--cceEEEccCCCeeeecCCCce--eEEEeecC
Confidence 3 22222 22344566553223334444444 556666665443 34566665 45778874
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.33 Score=49.06 Aligned_cols=207 Identities=15% Similarity=0.216 Sum_probs=105.9
Q ss_pred CceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCc--ceeEEEecCCeEE
Q 004368 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV--TASVEWAGNEALV 250 (758)
Q Consensus 174 ~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~--~~~~~wspDg~l~ 250 (758)
.-++.++.-.++.-.. .+++++|.||.+.|+.+.+..+ .|+.++++ |+.++. .+.+. ..++++..+|.++
T Consensus 7 ~y~~~i~~~~l~g~~~--e~SGLTy~pd~~tLfaV~d~~~----~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~v 79 (248)
T PF06977_consen 7 DYRVVIEAKPLPGILD--ELSGLTYNPDTGTLFAVQDEPG----EIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYV 79 (248)
T ss_dssp T-EEEEEEEE-TT--S---EEEEEEETTTTEEEEEETTTT----EEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEE
T ss_pred CcEEEEeeeECCCccC--CccccEEcCCCCeEEEEECCCC----EEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEE
Confidence 3466666444443221 3889999999999888887765 58889985 566543 45543 5668998777554
Q ss_pred EEEeCCCCCCceEEEEEcCCCCCC----cEEEee--e---cCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-
Q 004368 251 YITMDEILRPDKAWLHKLEADQSN----DICLYH--E---KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE- 320 (758)
Q Consensus 251 y~~~~~~~~~~~v~~~~l~~~~~~----~~~v~~--~---~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~- 320 (758)
.+. .+..+++.+++...... +..-+. . .+..+ -+++|.+.++.|++. ..+....||-++.....
T Consensus 80 l~~----Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~-EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 80 LSE----ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGF-EGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp EEE----TTTTEEEEEEE----TT--EEEEEEEE---S---SS---EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS
T ss_pred EEE----cCCCcEEEEEEeccccccchhhceEEecccccCCCcce-EEEEEcCCCCEEEEE-eCCCChhhEEEccccCcc
Confidence 443 23456888888443211 111111 1 12223 378999988887764 34455678888862211
Q ss_pred ceEEee--ccc------cce-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCccee-eecC-----CCCceeeeEEE
Q 004368 321 ELRVLT--PRV------VGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPH-----RESVKLQDIQL 385 (758)
Q Consensus 321 ~~~~l~--~~~------~~~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~-l~~~-----~~~~~~~~~~~ 385 (758)
...... +.. .+. ...+.|..++||+++... ..|..+|.++.-.... +... ..-...+++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es----~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES----RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT----TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred ceeeccccccccccceeccccceEEcCCCCeEEEEECCC----CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEE
Confidence 111111 100 011 123678888999998875 5788888654211112 2221 11235788999
Q ss_pred eCCEEEEEEEeC
Q 004368 386 FIDHLAVYEREG 397 (758)
Q Consensus 386 ~~~~l~~~~~~~ 397 (758)
+.+.-.++.++-
T Consensus 230 d~~G~LYIvsEp 241 (248)
T PF06977_consen 230 DPDGNLYIVSEP 241 (248)
T ss_dssp -TT--EEEEETT
T ss_pred CCCCCEEEEcCC
Confidence 887655555543
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.016 Score=67.26 Aligned_cols=205 Identities=15% Similarity=0.078 Sum_probs=100.5
Q ss_pred CeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCC----Cce----ee------ccccCcceeEEEecCCeEEEEEe
Q 004368 189 GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET----GTP----VG------KPLVGVTASVEWAGNEALVYITM 254 (758)
Q Consensus 189 ~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~----g~~----~~------~~~~~~~~~~~wspDg~l~y~~~ 254 (758)
...++-++.++|||.++|=.-. +. ...+.||..+. .+. ++ ..-.+....+.|||||+.++...
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq--~~-d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQ--VL-DGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCc--cc-cccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 3345778899999999873210 01 12233554332 000 00 01133466688999994444444
Q ss_pred CCCCCCceEEEEEc-C------C-CCCC------cEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 255 DEILRPDKAWLHKL-E------A-DQSN------DICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 255 ~~~~~~~~v~~~~l-~------~-~~~~------~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
|+ +--.+|...- + + +... ...++.+.+. -..++.||||+.+++-.+.+ +.|.+++..+-+
T Consensus 89 DD--~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-DV~Dv~Wsp~~~~lvS~s~D---nsViiwn~~tF~ 162 (942)
T KOG0973|consen 89 DD--RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-DVLDVNWSPDDSLLVSVSLD---NSVIIWNAKTFE 162 (942)
T ss_pred Cc--ceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-ccceeccCCCccEEEEeccc---ceEEEEccccce
Confidence 43 2223344331 1 1 0010 1234444333 34578999999988754433 346667776654
Q ss_pred ceEEeeccccce-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCC----Ccee--eeEEEeCCEEEEE
Q 004368 321 ELRVLTPRVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE----SVKL--QDIQLFIDHLAVY 393 (758)
Q Consensus 321 ~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~----~~~~--~~~~~~~~~l~~~ 393 (758)
..+.+..+..-+ ...|+|-|++|+-.+++. .-+++++. +.+..+.+..+-+ ...+ .+++++|++|+..
T Consensus 163 ~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDr---tikvwrt~--dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 163 LLKVLRGHQSLVKGVSWDPIGKYFASQSDDR---TLKVWRTS--DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred eeeeeecccccccceEECCccCeeeeecCCc---eEEEEEcc--cceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 233333222212 234999999777666543 35566532 2112221211111 1112 3556667776543
Q ss_pred -EEeCCeeEEEEEEc
Q 004368 394 -EREGGLQKITTYRL 407 (758)
Q Consensus 394 -~~~~g~~~l~v~~l 407 (758)
+.+++.+-+.|+..
T Consensus 238 nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIER 252 (942)
T ss_pred hhccCCcceeEEEec
Confidence 34455555555544
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00048 Score=62.70 Aligned_cols=114 Identities=13% Similarity=0.153 Sum_probs=71.9
Q ss_pred HHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCC---CCCCCC-hhhhhccCCCCCHH
Q 004368 583 AEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD---PTIPLT-TAEWEEWGDPWKEE 658 (758)
Q Consensus 583 ~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~---~~~~~~-~~~~~e~g~p~~~~ 658 (758)
-.|++++-. |.+..+.|.|+||+.++...-++|++|..+|+.+|+.|...+..+ .+.-+. ...| -+| ..+|.
T Consensus 91 erYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yyddDv~ynsP~dy-lpg-~~dp~ 166 (227)
T COG4947 91 ERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDDDVYYNSPSDY-LPG-LADPF 166 (227)
T ss_pred HHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccCceeecChhhh-ccC-CcChH
Confidence 345666543 577899999999999999999999999999999999996544321 111000 0000 001 01222
Q ss_pred HHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEE
Q 004368 659 FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILL 714 (758)
Q Consensus 659 ~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~ 714 (758)
..+.++. . -+.+.+|..|+..+ +..++-+.|.+..++..+..
T Consensus 167 ~l~rlr~-----------~-~~vfc~G~e~~~L~--~~~~L~~~l~dKqipaw~~~ 208 (227)
T COG4947 167 RLERLRR-----------I-DMVFCIGDEDPFLD--NNQHLSRLLSDKQIPAWMHV 208 (227)
T ss_pred HHHHHhh-----------c-cEEEEecCcccccc--chHHHHHHhccccccHHHHH
Confidence 2222221 1 26677799888766 66788888888777764433
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.088 Score=51.91 Aligned_cols=189 Identities=16% Similarity=0.131 Sum_probs=105.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
++..+.++.|.+++. .|+....+.+||+++|+.+.. ..+...-.+.|+++| .++++..+.-.....|.+.++.
T Consensus 54 avW~~Did~~s~~li-----TGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 54 AVWCCDIDWDSKHLI-----TGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR 128 (327)
T ss_pred eEEEEEecCCcceee-----eccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence 566677778888876 466678999999999998864 333345668999999 7777776655556667777776
Q ss_pred CCC----C-CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEe-eccccce-eeEEeecCCE
Q 004368 270 ADQ----S-NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL-TPRVVGV-DTAASHRGNH 342 (758)
Q Consensus 270 ~~~----~-~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l-~~~~~~~-~~~~s~dg~~ 342 (758)
... . +..+....++... ...-|+|-+++|+..-. ...|-.+|+.++...... ......+ ...+++|..+
T Consensus 129 ~~~~~~~s~ep~~kI~t~~ski-t~a~Wg~l~~~ii~Ghe---~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~ 204 (327)
T KOG0643|consen 129 DDSSDIDSEEPYLKIPTPDSKI-TSALWGPLGETIIAGHE---DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY 204 (327)
T ss_pred CChhhhcccCceEEecCCccce-eeeeecccCCEEEEecC---CCcEEEEEcccCceeeechhhhccccccccccCCcce
Confidence 332 1 2233333333333 24569999999875322 234667788776411111 0011112 2237888764
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEE
Q 004368 343 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYER 395 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 395 (758)
++-. ..+ .+.+|+ |..+....+....+. .+.-..+++..+++++..-
T Consensus 205 FiT~-s~D--ttakl~--D~~tl~v~Kty~te~-PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 205 FITG-SKD--TTAKLV--DVRTLEVLKTYTTER-PVNTAAISPLLDHVILGGG 251 (327)
T ss_pred EEec-ccC--ccceee--eccceeeEEEeeecc-cccceecccccceEEecCC
Confidence 3332 222 245554 333221111222221 2233455666677776543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.035 Score=63.37 Aligned_cols=165 Identities=14% Similarity=0.055 Sum_probs=96.3
Q ss_pred CceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec--cccCcceeEEEecCCe-EE
Q 004368 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNEA-LV 250 (758)
Q Consensus 174 ~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~wspDg~-l~ 250 (758)
.+..+|+.-++ .+....++-||+++|++.+ .+.|.++++.++..... ..++-+..+.+.|.+. ++
T Consensus 87 ~~~~iL~Rftl-------p~r~~~v~g~g~~iaagsd-----D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLA 154 (933)
T KOG1274|consen 87 EEDTILARFTL-------PIRDLAVSGSGKMIAAGSD-----DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLA 154 (933)
T ss_pred Cccceeeeeec-------cceEEEEecCCcEEEeecC-----ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEE
Confidence 45556666544 3567799999999997554 57899999887654332 2333366689999994 54
Q ss_pred EEEeCCCCCCceEEEEEcCCCCCCcEE--Ee---eecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEe
Q 004368 251 YITMDEILRPDKAWLHKLEADQSNDIC--LY---HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL 325 (758)
Q Consensus 251 y~~~~~~~~~~~v~~~~l~~~~~~~~~--v~---~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l 325 (758)
....+. +|+++++.++.....+ +. +..+......++|+|+|..+++...+ ..|-+++..+-+....|
T Consensus 155 vss~dG-----~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d---~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 155 VSSCDG-----KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD---NTVKVYSRKGWELQFKL 226 (933)
T ss_pred EEecCc-----eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC---CeEEEEccCCceeheee
Confidence 444443 4788888755321111 11 11113445568999996665554433 23556666554411122
Q ss_pred eccc--ccee-eEEeecCCEEEEEEcCCCCCCcEEEEEeCC
Q 004368 326 TPRV--VGVD-TAASHRGNHFFITRRSDELFNSELLACPVD 363 (758)
Q Consensus 326 ~~~~--~~~~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~ 363 (758)
.... ..+. ..|||.|++|+..+- +++|.++|++
T Consensus 227 r~~~~ss~~~~~~wsPnG~YiAAs~~-----~g~I~vWnv~ 262 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWSPNGKYIAASTL-----DGQILVWNVD 262 (933)
T ss_pred cccccccceEEEEEcCCCcEEeeecc-----CCcEEEEecc
Confidence 2211 1122 349999998876543 3457777765
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.081 Score=55.93 Aligned_cols=211 Identities=14% Similarity=0.182 Sum_probs=115.7
Q ss_pred eEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceee-ccccCc-ceeEEEecCC-eEEEE
Q 004368 176 HLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGV-TASVEWAGNE-ALVYI 252 (758)
Q Consensus 176 ~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~-~~~~~~-~~~~~wspDg-~l~y~ 252 (758)
..|-|.|.-...+ -.|.+++|.|.-..|. +...+| ..+||-+|=++...++ ..+... .....|+|+| ..+++
T Consensus 201 krlkDaNa~~ps~--~~I~sv~FHp~~plll-vaG~d~--~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~ 275 (514)
T KOG2055|consen 201 KRLKDANAAHPSH--GGITSVQFHPTAPLLL-VAGLDG--TLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFT 275 (514)
T ss_pred EeecccccCCcCc--CCceEEEecCCCceEE-EecCCC--cEEEEEecCccChhheeeeeccCccceeeecCCCceEEEe
Confidence 3556777654333 3678889999776554 444444 3556666655444333 234443 4457899999 56666
Q ss_pred EeCCCCCCceEEEEEcCCCCCCcEE-EeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc
Q 004368 253 TMDEILRPDKAWLHKLEADQSNDIC-LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG 331 (758)
Q Consensus 253 ~~~~~~~~~~v~~~~l~~~~~~~~~-v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 331 (758)
+... . -+|.+++.+.+...+- ++... ....-.+..|+|+.+|++..+. ..|+++...+++ +..-.+-...
T Consensus 276 s~rr---k-y~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~---G~I~lLhakT~e-li~s~KieG~ 346 (514)
T KOG2055|consen 276 SGRR---K-YLYSYDLETAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNN---GHIHLLHAKTKE-LITSFKIEGV 346 (514)
T ss_pred cccc---e-EEEEeeccccccccccCCCCcc-cchhheeEecCCCCeEEEcccC---ceEEeehhhhhh-hhheeeeccE
Confidence 5432 2 3788888766432211 11111 2223346789999999886443 468888887766 2211121122
Q ss_pred e-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcC
Q 004368 332 V-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 332 ~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~ 408 (758)
+ ...|+.||+.|++... .+.||.+|+.........+ .+..+.-..+++.-+ .++.+.++.|. +-||+.+
T Consensus 347 v~~~~fsSdsk~l~~~~~-----~GeV~v~nl~~~~~~~rf~-D~G~v~gts~~~S~ng~ylA~GS~~Gi--VNIYd~~ 417 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLASGG-----TGEVYVWNLRQNSCLHRFV-DDGSVHGTSLCISLNGSYLATGSDSGI--VNIYDGN 417 (514)
T ss_pred EeeEEEecCCcEEEEEcC-----CceEEEEecCCcceEEEEe-ecCccceeeeeecCCCceEEeccCcce--EEEeccc
Confidence 2 2338889988776633 2579999997643222222 222222334443332 22234445554 5577654
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.014 Score=61.83 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=60.4
Q ss_pred ChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHh
Q 004368 535 NSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN 614 (758)
Q Consensus 535 ~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 614 (758)
......++++|.-|++++.|+-...-.. ........+++..|++.+.+.. -.++|-++|+|.||.+.+++++
T Consensus 129 ~s~V~~l~~~g~~vfvIsw~nPd~~~~~------~~~edYi~e~l~~aid~v~~it--g~~~InliGyCvGGtl~~~ala 200 (445)
T COG3243 129 KSLVRWLLEQGLDVFVISWRNPDASLAA------KNLEDYILEGLSEAIDTVKDIT--GQKDINLIGYCVGGTLLAAALA 200 (445)
T ss_pred ccHHHHHHHcCCceEEEeccCchHhhhh------ccHHHHHHHHHHHHHHHHHHHh--CccccceeeEecchHHHHHHHH
Confidence 3456788999999999998754432111 1111111245556777777653 3489999999999999998888
Q ss_pred hCCCc-eeEEEEcCCccc
Q 004368 615 MRPDL-FKAAVAAVPFVD 631 (758)
Q Consensus 615 ~~p~~-f~a~v~~~~~~d 631 (758)
..+.. .+.+....-.+|
T Consensus 201 ~~~~k~I~S~T~lts~~D 218 (445)
T COG3243 201 LMAAKRIKSLTLLTSPVD 218 (445)
T ss_pred hhhhcccccceeeecchh
Confidence 88876 666666655555
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.12 Score=54.33 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=93.7
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc---cCc-ceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---VGV-TASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~---~~~-~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
+......|.|.|+...+++ ..+-.-|+.+|..+.... .++ ..+.+|.|||-||-+...+ ..|.++++
T Consensus 306 V~~ls~h~tgeYllsAs~d-----~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d----~~vkiwdl 376 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASND-----GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD----GVVKIWDL 376 (506)
T ss_pred ceeeeeccCCcEEEEecCC-----ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCC----ceEEEEEc
Confidence 4567888999999877663 245567788887654321 123 5678999999554443322 35777888
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec--cccceeeEEeecCCEEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP--RVVGVDTAASHRGNHFFIT 346 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~--~~~~~~~~~s~dg~~l~~~ 346 (758)
.+.. ...-|...... .-.++||.+|-||+..+++.. |.++|+..-+..+.+.- ..+-..+.++..|..+.+.
T Consensus 377 ks~~--~~a~Fpght~~-vk~i~FsENGY~Lat~add~~---V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 377 KSQT--NVAKFPGHTGP-VKAISFSENGYWLATAADDGS---VKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred CCcc--ccccCCCCCCc-eeEEEeccCceEEEEEecCCe---EEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 7652 33445443222 336789999999988665432 78889876442332221 2222345588889887766
Q ss_pred EcCCCCCCcEEEEEeCC
Q 004368 347 RRSDELFNSELLACPVD 363 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~ 363 (758)
.+ ..++|.+.-.
T Consensus 451 g~-----~l~Vy~~~k~ 462 (506)
T KOG0289|consen 451 GS-----DLQVYICKKK 462 (506)
T ss_pred cc-----eeEEEEEecc
Confidence 22 3678887643
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=1.2 Score=50.13 Aligned_cols=162 Identities=13% Similarity=0.086 Sum_probs=100.7
Q ss_pred eeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCC--cceEEEEEe
Q 004368 239 ASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK--ITRFVFYLD 315 (758)
Q Consensus 239 ~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~--~~~~l~~~d 315 (758)
+.++-|||+ .++|.-...+.+.+.+...++.+++.-...+ ....-++.|.+|++.+++...+. ....||.-.
T Consensus 132 g~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i-----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 132 GAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI-----TNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh-----cccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 456778999 6888777667788889999998874211111 11223567999999999988653 347899988
Q ss_pred CCCCC-ceEEeeccccc-eeeE--EeecCCEEEEEEcCCCCCCcEEEEEeCCCCCccee-eecCCCCceeeeEEEeCCEE
Q 004368 316 VSKPE-ELRVLTPRVVG-VDTA--ASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFIDHL 390 (758)
Q Consensus 316 ~~~~~-~~~~l~~~~~~-~~~~--~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~l 390 (758)
+.+.. .-+.+....+. .... -+...++|++..+. ....+++.++.+.++...+ +.+...+... .++-.++..
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~--~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY-~~eh~~d~f 283 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGS--HITSEVRLLDADDPEAEPKVVLPRENGVEY-SVEHGGDRF 283 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCC--CcceeEEEEecCCCCCceEEEEEcCCCcEE-eeeecCcEE
Confidence 87733 23334433222 2111 34455666666543 3457888888877665545 4444333322 445557888
Q ss_pred EEEEEeCCeeEEEEEEcCC
Q 004368 391 AVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 391 ~~~~~~~g~~~l~v~~l~~ 409 (758)
++..+.+| ....++..+.
T Consensus 284 ~i~sN~~g-knf~l~~ap~ 301 (682)
T COG1770 284 YILSNADG-KNFKLVRAPV 301 (682)
T ss_pred EEEecCCC-cceEEEEccC
Confidence 88888888 4455666553
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0087 Score=65.32 Aligned_cols=165 Identities=19% Similarity=0.171 Sum_probs=94.8
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHH-cCcE--EEEEecCCC-CCCchhHHhcccccCCcChHhHHHHHHHH--HHH
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFI--FAIAQIRGG-GELGRQWYENGKFLKKKNTFTDFIACAEY--LIK 588 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~--v~~~~~RG~-g~~G~~~~~~~~~~~~~~~~~D~~~~~~~--l~~ 588 (758)
-.|++++.||++.......|...++.++. .|-+ +..+|++-. |+ .+-....+-++.+..+ +.-
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG-----------~nI~h~ae~~vSf~r~kvlei 243 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGG-----------ANIKHAAEYSVSFDRYKVLEI 243 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCCC-----------cchHHHHHHHHHHhhhhhhhh
Confidence 36899999998733223334444444443 2433 334444421 11 1101112223333332 222
Q ss_pred cCCCCCCcEEEEEeChhHHHHHHHHhhCCCce-eEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcC
Q 004368 589 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLF-KAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYS 667 (758)
Q Consensus 589 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f-~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~s 667 (758)
.+-.--..|.++|+|+|..++..+...+-|.+ .|+||..-.+|-.. -+ -|.. |+.. .
T Consensus 244 ~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vd------gp--------rgir-DE~L----l--- 301 (784)
T KOG3253|consen 244 TGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVD------GP--------RGIR-DEAL----L--- 301 (784)
T ss_pred hccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCC------cc--------cCCc-chhh----H---
Confidence 24445588999999999888887777665554 55554432222110 00 0222 2111 1
Q ss_pred cccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCC
Q 004368 668 PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 668 p~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
..+.| +||+.|.+|.++++..-+++.+++++. ++++++. +++|..
T Consensus 302 ------dmk~P-VLFV~Gsnd~mcspn~ME~vreKMqA~---~elhVI~---~adhsm 346 (784)
T KOG3253|consen 302 ------DMKQP-VLFVIGSNDHMCSPNSMEEVREKMQAE---VELHVIG---GADHSM 346 (784)
T ss_pred ------hcCCc-eEEEecCCcccCCHHHHHHHHHHhhcc---ceEEEec---CCCccc
Confidence 23566 999999999999999999999999875 4577776 899976
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.54 Score=49.10 Aligned_cols=246 Identities=17% Similarity=0.203 Sum_probs=114.8
Q ss_pred eeEEECCCCCEEEEEE----e-CCCCeEEEEEEEECCCCceeec-cccC-----c---ceeEEEecCCeEEEEEeCCCCC
Q 004368 194 GCFQVSPDNKLVAYAE----D-TKGDEIYTVYVIDIETGTPVGK-PLVG-----V---TASVEWAGNEALVYITMDEILR 259 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~----~-~~G~e~~~l~v~dl~~g~~~~~-~~~~-----~---~~~~~wspDg~l~y~~~~~~~~ 259 (758)
+.+.+||||+.+.... . ..|...--|-++|.+|=.+..+ .++. + ...++.|+||+++|+..-. .
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T--P 116 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT--P 116 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES--S
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC--C
Confidence 4678999999997542 1 2233333578899998665543 3332 1 3446899999555554311 1
Q ss_pred CceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEE---eeccccc--e-e
Q 004368 260 PDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV---LTPRVVG--V-D 333 (758)
Q Consensus 260 ~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~---l~~~~~~--~-~ 333 (758)
...|-.+++... ..+-+-+-+.+.. +.-+...++..+. ..++-..+.+|.++.. .+. +.....+ + .
T Consensus 117 a~SVtVVDl~~~----kvv~ei~~PGC~~-iyP~~~~~F~~lC--~DGsl~~v~Ld~~Gk~-~~~~t~~F~~~~dp~f~~ 188 (342)
T PF06433_consen 117 ATSVTVVDLAAK----KVVGEIDTPGCWL-IYPSGNRGFSMLC--GDGSLLTVTLDADGKE-AQKSTKVFDPDDDPLFEH 188 (342)
T ss_dssp SEEEEEEETTTT----EEEEEEEGTSEEE-EEEEETTEEEEEE--TTSCEEEEEETSTSSE-EEEEEEESSTTTS-B-S-
T ss_pred CCeEEEEECCCC----ceeeeecCCCEEE-EEecCCCceEEEe--cCCceEEEEECCCCCE-eEeeccccCCCCcccccc
Confidence 234667777654 2222223343332 2222222222211 1122222333333222 111 1111111 1 1
Q ss_pred eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCc---cee-eecCC---CCce-----eeeEEEeCCEEEEEEEe-----
Q 004368 334 TAASHRGNHFFITRRSDELFNSELLACPVDNTSE---TTV-LIPHR---ESVK-----LQDIQLFIDHLAVYERE----- 396 (758)
Q Consensus 334 ~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~---~~~-l~~~~---~~~~-----~~~~~~~~~~l~~~~~~----- 396 (758)
..++..+.+++|.|-. +.|+.+++.+... ..| +.... .+.. +-.+....++||+.--.
T Consensus 189 ~~~~~~~~~~~F~Sy~-----G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gs 263 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYE-----GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGS 263 (342)
T ss_dssp -EEETTTTEEEEEBTT-----SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-
T ss_pred cceECCCCeEEEEecC-----CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCC
Confidence 2345667788887653 5788888865321 223 22111 1112 22233334677765322
Q ss_pred --CCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 397 --GGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 397 --~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
++..+||++++.. ++.+ .++.+..+..+ ++.+.+..-+.|..+. .-..++.+|..+|+
T Consensus 264 HKdpgteVWv~D~~t-~krv------~Ri~l~~~~~S---i~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 264 HKDPGTEVWVYDLKT-HKRV------ARIPLEHPIDS---IAVSQDDKPLLYALSA--GDGTLDVYDAATGK 323 (342)
T ss_dssp TTS-EEEEEEEETTT-TEEE------EEEEEEEEESE---EEEESSSS-EEEEEET--TTTEEEEEETTT--
T ss_pred ccCCceEEEEEECCC-CeEE------EEEeCCCccce---EEEccCCCcEEEEEcC--CCCeEEEEeCcCCc
Confidence 3456789998874 4433 33444333222 2334455555565543 23579999999987
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0074 Score=67.21 Aligned_cols=132 Identities=13% Similarity=0.022 Sum_probs=77.3
Q ss_pred CeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCC----------------hHHHHHHHcCcEEEEEec-CCCCC
Q 004368 496 GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN----------------SSRLSLLDRGFIFAIAQI-RGGGE 558 (758)
Q Consensus 496 G~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~----------------~~~~~l~~~G~~v~~~~~-RG~g~ 558 (758)
+..+.-|++..+.. ....|+||+.+||||.+...+.- ..-..|.+.+ .++.+|. +|.|-
T Consensus 60 ~~~lFyw~~~s~~~---~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~-~~l~iDqP~G~G~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRNG---NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEA-YVIYVDQPAGVGF 135 (462)
T ss_pred CceEEEEEEEcCCC---CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccccc-CeEEEeCCCCcCc
Confidence 45676666554432 34679999999999987543211 1112455554 4555664 56553
Q ss_pred CchhHHhcccccCCcChHhHHHHHHHHHHH-cCCCCCCcEEEEEeChhHHHHHHHHhh----CC------CceeEEEEcC
Q 004368 559 LGRQWYENGKFLKKKNTFTDFIACAEYLIK-NCYCTKEKLCIEGRSAGGLLIGAVLNM----RP------DLFKAAVAAV 627 (758)
Q Consensus 559 ~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~d~~~i~i~G~S~GG~l~~~~~~~----~p------~~f~a~v~~~ 627 (758)
.-..... .........+|+..+++...+ .......++.|+|+||||..+..++.+ .. =-++++++..
T Consensus 136 S~~~~~~--~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGN 213 (462)
T PTZ00472 136 SYADKAD--YDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGN 213 (462)
T ss_pred ccCCCCC--CCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEec
Confidence 2111000 011112345677776664433 333456899999999999976555543 11 1378999999
Q ss_pred Cccchh
Q 004368 628 PFVDVL 633 (758)
Q Consensus 628 ~~~d~~ 633 (758)
|++|..
T Consensus 214 g~~dp~ 219 (462)
T PTZ00472 214 GLTDPY 219 (462)
T ss_pred cccChh
Confidence 988854
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.13 Score=55.91 Aligned_cols=230 Identities=10% Similarity=0.018 Sum_probs=130.6
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC-cceeEEEecCC---eEEEEEeCCCCCCceEEEEEcCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNE---ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-~~~~~~wspDg---~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
.++||+|..+.|+.+. ..++++++.+-+...-.+.. .++.++.||.+ .++.-.....+.|..|.++...-
T Consensus 130 ~~qfs~dEsl~arlv~------nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVS------NEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred ccccccchhhhhhhhc------ceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 6789999999888774 46888888763322212221 24568999986 34433333445566677766652
Q ss_pred CCCCcEEEeeecCCce----eeEEEEcCCCcEEEEEecC---C------cceEEEEEeCCCCCceEEeeccccceeeEEe
Q 004368 271 DQSNDICLYHEKDDIY----SLGLQASESKKFLFIASES---K------ITRFVFYLDVSKPEELRVLTPRVVGVDTAAS 337 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~----~~~~~~S~Dg~~l~~~s~~---~------~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s 337 (758)
.... ..+ . ...| .+...|.+-|.-|++.... . +.+.||+++.++......|.+...-..+.|+
T Consensus 204 ~~~~-~~~-a--~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~ 279 (566)
T KOG2315|consen 204 EGQH-QPV-A--NKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWS 279 (566)
T ss_pred cccc-chh-h--hccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEEC
Confidence 2111 111 0 1112 2456799988877654422 1 3468999999843333344433333445599
Q ss_pred ecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccc
Q 004368 338 HRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSL 417 (758)
Q Consensus 338 ~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l 417 (758)
++|+.+.++..-- -.++-..|+.. ...--++++... -.-|++.++.+++..-.+-...+.+|+... .
T Consensus 280 ~s~~EF~VvyGfM---PAkvtifnlr~--~~v~df~egpRN-~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~----- 346 (566)
T KOG2315|consen 280 PSGREFAVVYGFM---PAKVTIFNLRG--KPVFDFPEGPRN-TAFFNPHGNIILLAGFGNLPGDMEVWDVPN--R----- 346 (566)
T ss_pred CCCCEEEEEEecc---cceEEEEcCCC--CEeEeCCCCCcc-ceEECCCCCEEEEeecCCCCCceEEEeccc--h-----
Confidence 9999998886542 24555666653 222234444332 235677788888877666666788888763 1
Q ss_pred cCCceeeccCcccccCCCCcccCCcEEEEEEecC
Q 004368 418 QGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSL 451 (758)
Q Consensus 418 ~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~ 451 (758)
+.|.-+... ......|++||..+....+++
T Consensus 347 ---K~i~~~~a~-~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 347 ---KLIAKFKAA-NTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred ---hhccccccC-CceEEEEcCCCcEEEEEeccc
Confidence 222211111 112356788888776555554
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.061 Score=59.45 Aligned_cols=157 Identities=13% Similarity=0.162 Sum_probs=88.3
Q ss_pred eEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC------cceeEEEecCC-eEEEEEeCCCCCCce
Q 004368 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG------VTASVEWAGNE-ALVYITMDEILRPDK 262 (758)
Q Consensus 190 ~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~------~~~~~~wspDg-~l~y~~~~~~~~~~~ 262 (758)
..-+...++||||++|||+.-. +..||-+..+. .......+. ....+.|+-|+ .+++++.+. .+
T Consensus 382 ~~nIs~~aiSPdg~~Ia~st~~----~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~----~~ 452 (691)
T KOG2048|consen 382 KENISCAAISPDGNLIAISTVS----RTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNI----FS 452 (691)
T ss_pred ccceeeeccCCCCCEEEEeecc----ceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEeccc----ce
Confidence 3457788999999999998632 12333333322 211111111 13457889999 788877332 23
Q ss_pred EEEEEcCCCCCCcEEEeeec-CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc--ceeeEEee-
Q 004368 263 AWLHKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV--GVDTAASH- 338 (758)
Q Consensus 263 v~~~~l~~~~~~~~~v~~~~-~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~--~~~~~~s~- 338 (758)
+....+.++..+...-.... .......+..|+||.||++.+ +...|+++++++.+ .+.+..+.. .....++|
T Consensus 453 le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~---t~g~I~v~nl~~~~-~~~l~~rln~~vTa~~~~~~ 528 (691)
T KOG2048|consen 453 LEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS---TRGQIFVYNLETLE-SHLLKVRLNIDVTAAAFSPF 528 (691)
T ss_pred eEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe---ccceEEEEEcccce-eecchhccCcceeeeecccc
Confidence 55555555533222222221 222334577899999998865 44679999999887 555443332 11223553
Q ss_pred cCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 339 RGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 339 dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
+-..|++.+.. .+++..|++.
T Consensus 529 ~~~~lvvats~-----nQv~efdi~~ 549 (691)
T KOG2048|consen 529 VRNRLVVATSN-----NQVFEFDIEA 549 (691)
T ss_pred ccCcEEEEecC-----CeEEEEecch
Confidence 33456555442 4688777743
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.016 Score=64.20 Aligned_cols=141 Identities=14% Similarity=0.098 Sum_probs=78.3
Q ss_pred EEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCC---------C--------hHHHHHHHcCcEEEEE
Q 004368 489 KWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF---------N--------SSRLSLLDRGFIFAIA 551 (758)
Q Consensus 489 ~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~---------~--------~~~~~l~~~G~~v~~~ 551 (758)
+.+....+..+.-|++..++. ....|+||+..||||.+...+. . .....|.+. ..++.+
T Consensus 16 l~~~~~~~~~lfyw~~~s~~~---~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l~i 91 (415)
T PF00450_consen 16 LPVNDNENAHLFYWFFESRND---PEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLLFI 91 (415)
T ss_dssp EEECTTTTEEEEEEEEE-SSG---GCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEEEE
T ss_pred EecCCCCCcEEEEEEEEeCCC---CCCccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cceEEE
Confidence 344445667787775544432 3567999999999997653210 0 011234433 678888
Q ss_pred ecCCCCCCchhHHhcccccCCcChHhHHHHHHH-HHHHcCCCCCCcEEEEEeChhHHHHH----HHHhhC------CCce
Q 004368 552 QIRGGGELGRQWYENGKFLKKKNTFTDFIACAE-YLIKNCYCTKEKLCIEGRSAGGLLIG----AVLNMR------PDLF 620 (758)
Q Consensus 552 ~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~----~~~~~~------p~~f 620 (758)
|.+-+.||...-........-....+|+..++. ++...+......+.|.|.||||..+. .++.+. +=.+
T Consensus 92 D~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inL 171 (415)
T PF00450_consen 92 DQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINL 171 (415)
T ss_dssp --STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEE
T ss_pred eecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccccc
Confidence 988777665432211111112334456666554 45555556667999999999999543 333444 2248
Q ss_pred eEEEEcCCccchh
Q 004368 621 KAAVAAVPFVDVL 633 (758)
Q Consensus 621 ~a~v~~~~~~d~~ 633 (758)
+++++..|++|..
T Consensus 172 kGi~IGng~~dp~ 184 (415)
T PF00450_consen 172 KGIAIGNGWIDPR 184 (415)
T ss_dssp EEEEEESE-SBHH
T ss_pred ccceecCcccccc
Confidence 9999999998853
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.2 Score=50.61 Aligned_cols=160 Identities=14% Similarity=0.181 Sum_probs=86.1
Q ss_pred CceEEeecccccCCC---C-eEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-
Q 004368 174 PEHLILDENVKAEGR---G-FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE- 247 (758)
Q Consensus 174 ~~~vllD~n~~~~~~---~-~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg- 247 (758)
+.-|+.|-.++.-.. + ...+.++.||+||++|.=++. ...|.+||+..|..+.. .++.-..+..|.|-.
T Consensus 45 G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~-----D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~ 119 (405)
T KOG1273|consen 45 GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR-----DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKR 119 (405)
T ss_pred CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC-----CceeEEEeccCCCceeEEEccCccceeeeccccC
Confidence 445666654443211 1 246889999999999974443 35689999999987653 444445557888765
Q ss_pred -eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEE---EEcCCCcEEEEEecCCcceEEEEEeCCCCC--c
Q 004368 248 -ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL---QASESKKFLFIASESKITRFVFYLDVSKPE--E 321 (758)
Q Consensus 248 -~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~---~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~--~ 321 (758)
+.+.+-.+.. -++..++.+ ....+-...+....... .+.+-|+||+.. ++++ .+.++|.++-+ .
T Consensus 120 n~~va~~~~~s-----p~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG-tsKG--kllv~~a~t~e~va 189 (405)
T KOG1273|consen 120 NKCVATIMEES-----PVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITG-TSKG--KLLVYDAETLECVA 189 (405)
T ss_pred CeEEEEEecCC-----cEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEe-cCcc--eEEEEecchheeee
Confidence 4444444332 233344432 12222111222211122 267889997653 3333 45666776654 1
Q ss_pred eEEeeccccce-eeEEeecCCEEEEEEcC
Q 004368 322 LRVLTPRVVGV-DTAASHRGNHFFITRRS 349 (758)
Q Consensus 322 ~~~l~~~~~~~-~~~~s~dg~~l~~~s~~ 349 (758)
.-+++.- ..+ ...++-.|+.|++.+.+
T Consensus 190 s~rits~-~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 190 SFRITSV-QAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred eeeechh-eeeeEEEEeccCcEEEEecCC
Confidence 2222221 112 22377788877776554
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.059 Score=58.23 Aligned_cols=164 Identities=11% Similarity=0.105 Sum_probs=96.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCc-ceeEEEecCC-eEEEEEeCCCCC-------Cc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV-TASVEWAGNE-ALVYITMDEILR-------PD 261 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~-~~~~~wspDg-~l~y~~~~~~~~-------~~ 261 (758)
.|..+.|||-+..|||-.....+--.++-++.+-+++.++. .+-++ .-.+-|-..| .|.+-....... +.
T Consensus 348 gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~ 427 (698)
T KOG2314|consen 348 GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNL 427 (698)
T ss_pred cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeE
Confidence 47789999999999999887766567788888888877653 33333 2346898888 666544322111 12
Q ss_pred eEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCC--cceEEEEEeCCCCCceEEeecccc--ceeeEEe
Q 004368 262 KAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK--ITRFVFYLDVSKPEELRVLTPRVV--GVDTAAS 337 (758)
Q Consensus 262 ~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~--~~~~l~~~d~~~~~~~~~l~~~~~--~~~~~~s 337 (758)
++++++ ... -.+.+.+-.+ ..+.++|-|.|...++.+... .+-..|-+...... +..+..-.. --..+|+
T Consensus 428 eIfrir--eKd-Ipve~velke--~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~-~~lVk~~dk~~~N~vfws 501 (698)
T KOG2314|consen 428 EIFRIR--EKD-IPVEVVELKE--SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK-PSLVKELDKKFANTVFWS 501 (698)
T ss_pred EEEEee--ccC-CCceeeecch--heeeeeeccCCCeEEEEEccccccceeEEEeecCCCc-hhhhhhhcccccceEEEc
Confidence 333332 221 1122222222 345678999887766655443 33455655543333 333322111 1234599
Q ss_pred ecCCEEEEEEcCCCCCCcEEEEEeCC
Q 004368 338 HRGNHFFITRRSDELFNSELLACPVD 363 (758)
Q Consensus 338 ~dg~~l~~~s~~~~~~~~~L~~~~~~ 363 (758)
|.|+++++.+-.. .++.|..+|.+
T Consensus 502 PkG~fvvva~l~s--~~g~l~F~D~~ 525 (698)
T KOG2314|consen 502 PKGRFVVVAALVS--RRGDLEFYDTD 525 (698)
T ss_pred CCCcEEEEEEecc--cccceEEEecc
Confidence 9999887765543 35778888865
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.3 Score=51.92 Aligned_cols=151 Identities=11% Similarity=0.081 Sum_probs=86.2
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
-.+....|+-||..||+..- ...++||+..++....+. -.+-+.++.|+.+| .|+-...|. ...+++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~-----~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~-----ttilwd~ 305 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSE-----DGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDG-----TTILWDA 305 (524)
T ss_pred CCcceEEecCCCCeEEEeec-----CcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCc-----cEEEEec
Confidence 45788899999999998664 347889998776554432 23335569999999 565433332 2455565
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeE-EeecCCEEEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTA-ASHRGNHFFITR 347 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s 347 (758)
-++ +....|+..... .+++.|-.+.++. .+.....-.||.++.+.+ ...+..+...+... |.|.|..|+-.+
T Consensus 306 ~~g--~~~q~f~~~s~~-~lDVdW~~~~~F~--ts~td~~i~V~kv~~~~P--~~t~~GH~g~V~alk~n~tg~LLaS~S 378 (524)
T KOG0273|consen 306 HTG--TVKQQFEFHSAP-ALDVDWQSNDEFA--TSSTDGCIHVCKVGEDRP--VKTFIGHHGEVNALKWNPTGSLLASCS 378 (524)
T ss_pred cCc--eEEEeeeeccCC-ccceEEecCceEe--ecCCCceEEEEEecCCCc--ceeeecccCceEEEEECCCCceEEEec
Confidence 444 233444433221 2356676655542 233333345666666553 44455444444443 888787554444
Q ss_pred cCCCCCCcEEEEEe
Q 004368 348 RSDELFNSELLACP 361 (758)
Q Consensus 348 ~~~~~~~~~L~~~~ 361 (758)
++. ..+|+-+.
T Consensus 379 dD~---TlkiWs~~ 389 (524)
T KOG0273|consen 379 DDG---TLKIWSMG 389 (524)
T ss_pred CCC---eeEeeecC
Confidence 332 46676654
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0025 Score=44.11 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=21.5
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYV 221 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v 221 (758)
...+.|||||++|+|++++.+....+||+
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred ccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 45789999999999999998222577875
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.37 Score=50.30 Aligned_cols=201 Identities=17% Similarity=0.153 Sum_probs=101.9
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
...+++|.|||++.+.--.. ...+-|+|++.++.+.. .+++|..-+-|.+++ |+-.+.|. .+..+.|+..
T Consensus 97 ~~~~~ls~dgk~~~V~N~TP---a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~-F~~lC~DG-----sl~~v~Ld~~ 167 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTP---ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRG-FSMLCGDG-----SLLTVTLDAD 167 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESS---SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTE-EEEEETTS-----CEEEEEETST
T ss_pred ccceEEccCCcEEEEEccCC---CCeEEEEECCCCceeeeecCCCEEEEEecCCCc-eEEEecCC-----ceEEEEECCC
Confidence 35678999999986554332 26799999999998865 678885544454443 33333332 2444455433
Q ss_pred CCCcE---EEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-----ceEEeeccc--cc-----ee-eE
Q 004368 272 QSNDI---CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-----ELRVLTPRV--VG-----VD-TA 335 (758)
Q Consensus 272 ~~~~~---~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-----~~~~l~~~~--~~-----~~-~~ 335 (758)
+.+.. .+|...+...+....++.++.+++|.+-+ ..||.+|+.+.. ++..++..+ .+ .+ ..
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~---G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A 244 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYE---GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA 244 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTT---SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecC---CEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence 22111 13322222233355566665555554433 468888887765 111122111 11 12 22
Q ss_pred EeecCCEEEEEEcCCC-----CCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC--CEEEEEEEeCCeeEEEEEEcC
Q 004368 336 ASHRGNHFFITRRSDE-----LFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 336 ~s~dg~~l~~~s~~~~-----~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+.+..++||++-+.+. .+...|+.+|+++..... -++-.. .+.++.++. +-+++... .+...+.+++..
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~-Ri~l~~--~~~Si~Vsqd~~P~L~~~~-~~~~~l~v~D~~ 320 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA-RIPLEH--PIDSIAVSQDDKPLLYALS-AGDGTLDVYDAA 320 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE-EEEEEE--EESEEEEESSSS-EEEEEE-TTTTEEEEEETT
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE-EEeCCC--ccceEEEccCCCcEEEEEc-CCCCeEEEEeCc
Confidence 5566778888775431 245689999987632111 222111 233455544 33433333 233457788876
Q ss_pred C
Q 004368 409 A 409 (758)
Q Consensus 409 ~ 409 (758)
.
T Consensus 321 t 321 (342)
T PF06433_consen 321 T 321 (342)
T ss_dssp T
T ss_pred C
Confidence 4
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.04 Score=61.01 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=68.9
Q ss_pred CCCceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCc-ceeEEEecCC-eE
Q 004368 172 APPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE-AL 249 (758)
Q Consensus 172 ~~~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~-~~~~~wspDg-~l 249 (758)
+.++++++|+|.+.. ++.+.+..-++|-|++++||.....|+++..|..+..+.|+.....+... .+.++|.+|+ .+
T Consensus 106 ~~e~~~~ld~~~~~d-d~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~~e~~~~v~~~~~~~~~~~~~~~g~ 184 (712)
T KOG2237|consen 106 EKEEEVFLDPNALGD-DGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEGKELFTVVIDVKFSGPVWTHDGKGV 184 (712)
T ss_pred hcccceecCCccCCC-CceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCCCccceeeeeeccCCceeeccCCce
Confidence 357899999999985 67889999999999999999999999998888888888777766545444 6779999999 78
Q ss_pred EEEEeC
Q 004368 250 VYITMD 255 (758)
Q Consensus 250 ~y~~~~ 255 (758)
+|.+..
T Consensus 185 ~y~~w~ 190 (712)
T KOG2237|consen 185 SYLAWA 190 (712)
T ss_pred Eeeeec
Confidence 777654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.096 Score=56.80 Aligned_cols=141 Identities=12% Similarity=0.141 Sum_probs=83.3
Q ss_pred eEEECCCCCEEEEEE----eCCCC---eEEEEEEEECCCCcee-eccccCcceeEEEecCC-eEEEEEeCCCCCCceEEE
Q 004368 195 CFQVSPDNKLVAYAE----DTKGD---EIYTVYVIDIETGTPV-GKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~----~~~G~---e~~~l~v~dl~~g~~~-~~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~ 265 (758)
.+.|.+-|.-|.... |..|. ...+||.++.++.... ++.-.+-+..+.|+|+| .|..+-. -.|..+-+
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyG---fMPAkvti 298 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYG---FMPAKVTI 298 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEe---cccceEEE
Confidence 457888888776653 33221 1368999999843332 22323446679999999 5544432 23556777
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecC--CcceEEEEEeCCCCCceEEeec-cccceee-EEeecCC
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES--KITRFVFYLDVSKPEELRVLTP-RVVGVDT-AASHRGN 341 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~--~~~~~l~~~d~~~~~~~~~l~~-~~~~~~~-~~s~dg~ 341 (758)
+++... .+..+.+. ++. .+-|+|-|++|++..-. .+..++| |+.+.+ .+.. ...+..+ .|+|||+
T Consensus 299 fnlr~~---~v~df~eg-pRN--~~~fnp~g~ii~lAGFGNL~G~mEvw--Dv~n~K---~i~~~~a~~tt~~eW~PdGe 367 (566)
T KOG2315|consen 299 FNLRGK---PVFDFPEG-PRN--TAFFNPHGNIILLAGFGNLPGDMEVW--DVPNRK---LIAKFKAANTTVFEWSPDGE 367 (566)
T ss_pred EcCCCC---EeEeCCCC-Ccc--ceEECCCCCEEEEeecCCCCCceEEE--eccchh---hccccccCCceEEEEcCCCc
Confidence 777644 22233322 221 34589999999987633 4555555 655533 2222 2223333 4999999
Q ss_pred EEEEEEcC
Q 004368 342 HFFITRRS 349 (758)
Q Consensus 342 ~l~~~s~~ 349 (758)
+|+-.|..
T Consensus 368 ~flTATTa 375 (566)
T KOG2315|consen 368 YFLTATTA 375 (566)
T ss_pred EEEEEecc
Confidence 88877664
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.05 Score=59.57 Aligned_cols=153 Identities=14% Similarity=0.056 Sum_probs=94.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec--cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+-+.+||+||+++| .|+-...++|||..+.++... .-...+-.++|+|=- .|+.+.....++ .+.+++.
T Consensus 303 eVCgLkws~d~~~lA-----SGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~--~i~fwn~ 375 (484)
T KOG0305|consen 303 EVCGLKWSPDGNQLA-----SGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR--CIKFWNT 375 (484)
T ss_pred eeeeeEECCCCCeec-----cCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc--EEEEEEc
Confidence 567889999999998 444467899999855444331 223345568999976 676666543333 4666666
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCC-cceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK-ITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFIT 346 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~ 346 (758)
-++.. +-.-.......++.|++..+-|+.+.... +.-.||.++. .+....+..+..-+.+ .++|||..++..
T Consensus 376 ~~g~~----i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 376 NTGAR----IDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--MKLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred CCCcE----ecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--cceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 65532 21112233456889999998887655432 2235555543 3324445544443444 399999988877
Q ss_pred EcCCCCCCcEEEEE
Q 004368 347 RRSDELFNSELLAC 360 (758)
Q Consensus 347 s~~~~~~~~~L~~~ 360 (758)
+.++ +.+++.+
T Consensus 450 a~DE---Tlrfw~~ 460 (484)
T KOG0305|consen 450 AADE---TLRFWNL 460 (484)
T ss_pred cccC---cEEeccc
Confidence 6654 5666654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.21 Score=56.67 Aligned_cols=148 Identities=12% Similarity=0.176 Sum_probs=73.2
Q ss_pred eEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcC-CCcEEEEEecCCcceEEEEEeCCC
Q 004368 240 SVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSK 318 (758)
Q Consensus 240 ~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~-Dg~~l~~~s~~~~~~~l~~~d~~~ 318 (758)
.+.||.++.|+=.+.|.+ |.+++++.. +=..+|.. ..|...+++.| |.+|+ ++..-...-+||- +.+
T Consensus 374 DlSWSKn~fLLSSSMDKT-----VRLWh~~~~--~CL~~F~H--ndfVTcVaFnPvDDryF-iSGSLD~KvRiWs--I~d 441 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMDKT-----VRLWHPGRK--ECLKVFSH--NDFVTCVAFNPVDDRYF-ISGSLDGKVRLWS--ISD 441 (712)
T ss_pred ecccccCCeeEecccccc-----EEeecCCCc--ceeeEEec--CCeeEEEEecccCCCcE-eecccccceEEee--cCc
Confidence 367888876655555543 666677765 34556654 45777788999 66664 3333334445554 333
Q ss_pred CCceEEeeccccceee-EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCc-ceeeecCC-----CCceeeeEEEeC---C
Q 004368 319 PEELRVLTPRVVGVDT-AASHRGNHFFITRRSDELFNSELLACPVDNTSE-TTVLIPHR-----ESVKLQDIQLFI---D 388 (758)
Q Consensus 319 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~-~~~l~~~~-----~~~~~~~~~~~~---~ 388 (758)
.+ +.--+.-.+-+.. -+.|||+..++-+-.+ .-++| +..+..- ..+.|... ....+.++..+. +
T Consensus 442 ~~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G---~C~fY--~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~ 515 (712)
T KOG0283|consen 442 KK-VVDWNDLRDLITAVCYSPDGKGAVIGTFNG---YCRFY--DTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD 515 (712)
T ss_pred Ce-eEeehhhhhhheeEEeccCCceEEEEEecc---EEEEE--EccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC
Confidence 32 1111111111222 2789988666655432 22333 3222100 11111111 112577777663 3
Q ss_pred EEEEEEEeCCeeEEEEEEcC
Q 004368 389 HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 389 ~l~~~~~~~g~~~l~v~~l~ 408 (758)
.++++ ..| ++|+||++.
T Consensus 516 ~vLVT-SnD--SrIRI~d~~ 532 (712)
T KOG0283|consen 516 EVLVT-SND--SRIRIYDGR 532 (712)
T ss_pred eEEEe-cCC--CceEEEecc
Confidence 34444 434 468899874
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.23 Score=48.56 Aligned_cols=176 Identities=12% Similarity=0.112 Sum_probs=103.1
Q ss_pred EEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEc
Q 004368 216 IYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQAS 293 (758)
Q Consensus 216 ~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S 293 (758)
.-+|++|.+.+|.=... . .+.-...++-+||++.+.... ...|.++++.+.....+..|+..... ...+.|.
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~kN-VtaVgF~ 92 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTKN-VTAVGFQ 92 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCCc-eEEEEEe
Confidence 46899999999975542 1 122356688999994333322 23588889988866667777665433 3467889
Q ss_pred CCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeE-EeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeee
Q 004368 294 ESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTA-ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLI 372 (758)
Q Consensus 294 ~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~ 372 (758)
-||||++- .++.++-+|| |+.... .+++......+... ..|+...|+. .+. ++.|.+.|+....-...++
T Consensus 93 ~dgrWMyT-gseDgt~kIW--dlR~~~-~qR~~~~~spVn~vvlhpnQteLis-~dq----sg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 93 CDGRWMYT-GSEDGTVKIW--DLRSLS-CQRNYQHNSPVNTVVLHPNQTELIS-GDQ----SGNIRVWDLGENSCTHELI 163 (311)
T ss_pred ecCeEEEe-cCCCceEEEE--eccCcc-cchhccCCCCcceEEecCCcceEEe-ecC----CCcEEEEEccCCccccccC
Confidence 99999764 4555566666 444443 33332222222222 4455554443 333 3568888886532344477
Q ss_pred cCCCCceeeeEEEeCCEEEEE-EEeCCeeEEEEEEcCC
Q 004368 373 PHRESVKLQDIQLFIDHLAVY-EREGGLQKITTYRLPA 409 (758)
Q Consensus 373 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~l~v~~l~~ 409 (758)
|+. +..+.++.+..+.-.+. .+..| ..++|++-.
T Consensus 164 Pe~-~~~i~sl~v~~dgsml~a~nnkG--~cyvW~l~~ 198 (311)
T KOG0315|consen 164 PED-DTSIQSLTVMPDGSMLAAANNKG--NCYVWRLLN 198 (311)
T ss_pred CCC-CcceeeEEEcCCCcEEEEecCCc--cEEEEEccC
Confidence 765 45677777665543333 33334 477888863
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0021 Score=68.06 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=59.8
Q ss_pred CCCCCEEEEecCCCccCCCCCCCh-HHHHHHHc---CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHH
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNS-SRLSLLDR---GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK 588 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~---G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 588 (758)
+.+.|++|++||-.+......+.. ....++.+ .+.|+++|...+... .+..+.... ...-..+...+..|..
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~~n~--~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAVANT--RLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc--cccchhhhH--HHHHHHHHHHHHHHHh
Confidence 456899999999544442333333 33445554 899999998543221 111111100 0111234445677775
Q ss_pred cCCCCCCcEEEEEeChhHHHHHHHHhhCCC--ceeEEEEc
Q 004368 589 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPD--LFKAAVAA 626 (758)
Q Consensus 589 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~--~f~a~v~~ 626 (758)
...+++++|-++|||.|+++++.+..+... .+..+...
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgL 183 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGL 183 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEE
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEec
Confidence 556789999999999999999999988655 44444443
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.23 Score=52.73 Aligned_cols=226 Identities=16% Similarity=0.120 Sum_probs=118.6
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcc-eeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVT-ASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~-~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+-+++|+.+|.||+- |+-..++.+||..+|+..+. ++.... -.+.|-.+..|+-...+. .++..+++
T Consensus 278 PI~slKWnk~G~yilS-----~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~-----~i~V~kv~ 347 (524)
T KOG0273|consen 278 PIFSLKWNKKGTYILS-----GGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDG-----CIHVCKVG 347 (524)
T ss_pred ceEEEEEcCCCCEEEe-----ccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCc-----eEEEEEec
Confidence 4667899999999973 33345788999999988763 333322 347897666665443322 25666666
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCE------
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNH------ 342 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~------ 342 (758)
.+ .++..+...+.. ...+.|.|-|.-|+ +.++..+-.||-+.-+. ....+......+. ..|+|+|.-
T Consensus 348 ~~--~P~~t~~GH~g~-V~alk~n~tg~LLa-S~SdD~TlkiWs~~~~~--~~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 348 ED--RPVKTFIGHHGE-VNALKWNPTGSLLA-SCSDDGTLKIWSMGQSN--SVHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred CC--CcceeeecccCc-eEEEEECCCCceEE-EecCCCeeEeeecCCCc--chhhhhhhccceeeEeecCCCCccCCCcC
Confidence 55 334444443333 23577999887554 55556667777653322 1222322222222 237776641
Q ss_pred -EEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCc
Q 004368 343 -FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGK 421 (758)
Q Consensus 343 -l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~ 421 (758)
+.+++.. .+.-|..+|+..+.....+..+++.+.-..+++++.+++ ....+|. +.+++... ++.. +
T Consensus 422 ~~~l~sas---~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA-sGs~dg~--V~iws~~~-~~l~------~ 488 (524)
T KOG0273|consen 422 NLMLASAS---FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA-SGSLDGC--VHIWSTKT-GKLV------K 488 (524)
T ss_pred CceEEEee---cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE-ecCCCCe--eEeccccc-hhee------E
Confidence 1111111 123455556654322223556666655555555565654 3344443 56666553 2211 1
Q ss_pred eeeccCcccccCCCCcccCCcEEEEEEe
Q 004368 422 SVEFIDPVYSIDPSESVFSSRILRFHYS 449 (758)
Q Consensus 422 ~i~~p~~~~~i~~~~~~~d~~~l~~~~s 449 (758)
.. .+. ..|..+.++.+++.+...++
T Consensus 489 s~--~~~-~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 489 SY--QGT-GGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred ee--cCC-CeEEEEEEcCCCCEEEEEec
Confidence 11 111 12334556777777766654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0075 Score=60.32 Aligned_cols=105 Identities=19% Similarity=0.269 Sum_probs=63.8
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc----CcceeEEEecCC-eEEEEEeCCCCCCceEEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV----GVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~----~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~ 267 (758)
+-.+.+|.|...|| .|+-...|.||.+.+|.-++ .++ .....+.||.|+ +++-.+.|. .+.+|-
T Consensus 266 Vlci~FSRDsEMlA-----sGsqDGkIKvWri~tG~ClR-rFdrAHtkGvt~l~FSrD~SqiLS~sfD~-----tvRiHG 334 (508)
T KOG0275|consen 266 VLCISFSRDSEMLA-----SGSQDGKIKVWRIETGQCLR-RFDRAHTKGVTCLSFSRDNSQILSASFDQ-----TVRIHG 334 (508)
T ss_pred eEEEeecccHHHhh-----ccCcCCcEEEEEEecchHHH-HhhhhhccCeeEEEEccCcchhhcccccc-----eEEEec
Confidence 34557788888777 35445679999999998654 221 124568999999 776555543 367777
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEE
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVF 312 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~ 312 (758)
+.++. -..-|.+ ...+.-...+++||.+|+-.+ +.++-.+|
T Consensus 335 lKSGK--~LKEfrG-HsSyvn~a~ft~dG~~iisaS-sDgtvkvW 375 (508)
T KOG0275|consen 335 LKSGK--CLKEFRG-HSSYVNEATFTDDGHHIISAS-SDGTVKVW 375 (508)
T ss_pred cccch--hHHHhcC-ccccccceEEcCCCCeEEEec-CCccEEEe
Confidence 77662 1112222 233444566889998876443 33333333
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.051 Score=49.95 Aligned_cols=126 Identities=18% Similarity=0.175 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEc---CCccchhhccCCCCCCCChhhhhccCC
Q 004368 577 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA---VPFVDVLTTMLDPTIPLTTAEWEEWGD 653 (758)
Q Consensus 577 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~---~~~~d~~~~~~~~~~~~~~~~~~e~g~ 653 (758)
....+-++-++.+.. | ..++|+|.|.|||.+-++..++- +++++.. .|.-++..+...+..|.+..+|. -.
T Consensus 43 ~~a~~ele~~i~~~~-~-~~p~ivGssLGGY~At~l~~~~G--irav~~NPav~P~e~l~gylg~~en~ytg~~y~--le 116 (191)
T COG3150 43 QQALKELEKAVQELG-D-ESPLIVGSSLGGYYATWLGFLCG--IRAVVFNPAVRPYELLTGYLGRPENPYTGQEYV--LE 116 (191)
T ss_pred HHHHHHHHHHHHHcC-C-CCceEEeecchHHHHHHHHHHhC--ChhhhcCCCcCchhhhhhhcCCCCCCCCcceEE--ee
Confidence 445555555555532 2 33999999999999999998763 4554432 23333333333334444433321 00
Q ss_pred CCCHHHHHHHHhcCcccccCCCCCCeEEEeccCC-CCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCC
Q 004368 654 PWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLN-DPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 654 p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~-D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
+ .....+. ..++...+-|..|++-... |....+.++..++.... .++.. ++.|.+
T Consensus 117 ~---~hI~~l~----~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~~-------~~V~d---gg~H~F 172 (191)
T COG3150 117 S---RHIATLC----VLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPCY-------EIVWD---GGDHKF 172 (191)
T ss_pred h---hhHHHHH----HhhccccCCCcEEEeecccccHHHHHHHHHHHhhhhh-------heeec---CCCccc
Confidence 1 1111111 1234445556555555555 87776665555554432 23343 777865
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.052 Score=53.40 Aligned_cols=206 Identities=21% Similarity=0.182 Sum_probs=109.1
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcC-----cEEEEEecCCCCCCchhHHhcc-------cccCCcChHhH----
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRG-----FIFAIAQIRGGGELGRQWYENG-------KFLKKKNTFTD---- 578 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G-----~~v~~~~~RG~g~~G~~~~~~~-------~~~~~~~~~~D---- 578 (758)
..|+| |+||.-|... ++......++.+| -.++.++.-|+-..-....... -...+.++..|
T Consensus 45 ~iPTI-fIhGsgG~as--S~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w 121 (288)
T COG4814 45 AIPTI-FIHGSGGTAS--SLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW 121 (288)
T ss_pred ccceE-EEecCCCChh--HHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence 46754 5788555433 2455566666655 5577777777532211111100 01222333334
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC------CCceeEEEEcCCccchhhccCCCCCCCChhhhhccC
Q 004368 579 FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR------PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWG 652 (758)
Q Consensus 579 ~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g 652 (758)
+..++.+|.++..+ .++-++||||||......+..+ |.+=+-+.+.+||- .-....+++. + ++.-=|
T Consensus 122 lk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN-~~~l~~de~v--~--~v~~~~ 194 (288)
T COG4814 122 LKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN-VGNLVPDETV--T--DVLKDG 194 (288)
T ss_pred HHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc-ccccCCCcch--h--eeeccC
Confidence 45578899988765 7899999999999777766653 54555566666654 1111111111 1 110012
Q ss_pred CC-CCHHHHHHHHhcCcccccCCCCCCeEEEeccCC------CCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCC
Q 004368 653 DP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLN------DPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 653 ~p-~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~------D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
.+ ....+++++... +..+.+ +. -+|++.|+- |-.||...+.-.+.-+..++....--+++. +++-|.-
T Consensus 195 ~~~~~t~y~~y~~~n--~k~v~~-~~-evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~G-k~a~Hs~ 269 (288)
T COG4814 195 PGLIKTPYYDYIAKN--YKKVSP-NT-EVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKG-KDARHSK 269 (288)
T ss_pred ccccCcHHHHHHHhc--ceeCCC-Cc-EEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeC-Ccchhhc
Confidence 21 122234444321 111111 33 388888975 457888888877777776665544445542 3578865
Q ss_pred CCChHHHHHH
Q 004368 726 KSGRFERLRE 735 (758)
Q Consensus 726 ~~~~~~~~~~ 735 (758)
........+.
T Consensus 270 lhen~~v~~y 279 (288)
T COG4814 270 LHENPTVAKY 279 (288)
T ss_pred cCCChhHHHH
Confidence 4444444433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.26 Score=50.19 Aligned_cols=151 Identities=19% Similarity=0.293 Sum_probs=82.8
Q ss_pred CeEEEeeEEECCCCCEEEEEEeCCCC--eE--EEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceE
Q 004368 189 GFYSVGCFQVSPDNKLVAYAEDTKGD--EI--YTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKA 263 (758)
Q Consensus 189 ~~~~i~~~~~SPDG~~lAy~~~~~G~--e~--~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v 263 (758)
.........+.|||+ |-++...... .. ..|+.++.+ ++.... .--....+++|+||++.+|+.... ..+|
T Consensus 84 ~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~---~~~i 158 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF---NGRI 158 (246)
T ss_dssp CTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT---TTEE
T ss_pred ccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc---ccee
Confidence 467788999999999 4444432211 11 679999988 655432 112235679999999544554322 2358
Q ss_pred EEEEcCCCCC--CcEEEeee-cCC-ceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc-eeeEE-e
Q 004368 264 WLHKLEADQS--NDICLYHE-KDD-IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAA-S 337 (758)
Q Consensus 264 ~~~~l~~~~~--~~~~v~~~-~~~-~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~-s 337 (758)
+++++..... ....++.. ... ..--++.+..+|+ |++... ....|++++.+ ++....+.-.... ....| .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~--~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW--GGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE--TTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred EEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc--CCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 8888864322 12223322 222 2344677888986 444333 44678999987 4413323222122 22235 4
Q ss_pred ecCCEEEEEEc
Q 004368 338 HRGNHFFITRR 348 (758)
Q Consensus 338 ~dg~~l~~~s~ 348 (758)
++.+.||+.+.
T Consensus 235 ~~~~~L~vTta 245 (246)
T PF08450_consen 235 PDGKTLYVTTA 245 (246)
T ss_dssp TTSSEEEEEEB
T ss_pred CCCCEEEEEeC
Confidence 67788888764
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.75 Score=55.59 Aligned_cols=191 Identities=15% Similarity=0.114 Sum_probs=98.9
Q ss_pred EeeEEECCC-CCEEEEEEeCCCCeEEEEEEEECCCCceeecc--ccCcceeEEEec-CCeEEEEEeCCCCCCceEEEEEc
Q 004368 193 VGCFQVSPD-NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAG-NEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 193 i~~~~~SPD-G~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~wsp-Dg~l~y~~~~~~~~~~~v~~~~l 268 (758)
+..+.|+|. +++||- ...+ ..|++||+.+++.+... -.+.+..++|+| |+.++.+...+. .|.++++
T Consensus 535 v~~l~~~~~~~~~las-~~~D----g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg----~v~iWd~ 605 (793)
T PLN00181 535 LSGICWNSYIKSQVAS-SNFE----GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG----SVKLWSI 605 (793)
T ss_pred eeeEEeccCCCCEEEE-EeCC----CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC----EEEEEEC
Confidence 456778775 566553 3333 47999999988765421 122356689997 566656654332 4777788
Q ss_pred CCCCCCcEEEeeecCCceeeEEEE-cCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeeccccceeeE-EeecCCEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQA-SESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTA-ASHRGNHFFI 345 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~-S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~-~s~dg~~l~~ 345 (758)
.++. ....+... .....+.| +++|.+|+..+.+ ..|+++|+.+.. ....+......+... |. ++..|+.
T Consensus 606 ~~~~--~~~~~~~~--~~v~~v~~~~~~g~~latgs~d---g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 606 NQGV--SIGTIKTK--ANICCVQFPSESGRSLAFGSAD---HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred CCCc--EEEEEecC--CCeEEEEEeCCCCCEEEEEeCC---CeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEE
Confidence 7652 22233222 12335566 4578887765433 367888887654 233333333333333 54 6666554
Q ss_pred EEcCCCCCCcEEEEEeCCCCC-----c-ceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 346 TRRSDELFNSELLACPVDNTS-----E-TTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~-----~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
.+.+ ..|..+|+.... . ...+..+........+++.+. ++++...++. +.+|+..
T Consensus 678 ~s~D-----~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~--v~iw~~~ 738 (793)
T PLN00181 678 SSTD-----NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNE--VFVYHKA 738 (793)
T ss_pred EECC-----CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCE--EEEEECC
Confidence 4432 235555554210 0 111222222222233444444 3445555654 6677654
|
|
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0096 Score=62.32 Aligned_cols=130 Identities=21% Similarity=0.322 Sum_probs=82.6
Q ss_pred eEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCCh---HHHHHHH-cCcEEEEEecCCCCC---CchhHHhccc-
Q 004368 497 TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---SRLSLLD-RGFIFAIAQIRGGGE---LGRQWYENGK- 568 (758)
Q Consensus 497 ~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~-~G~~v~~~~~RG~g~---~G~~~~~~~~- 568 (758)
.+.+..++....+ -..+..|.++|. | -..... .|.. .+.-++. .+-.++.+..|--|+ +|.+-+....
T Consensus 63 ~tF~qRylin~~f-w~~g~gPIffYt-G-NEGdie-~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~h 138 (492)
T KOG2183|consen 63 KTFDQRYLINDDF-WKKGEGPIFFYT-G-NEGDIE-WFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARH 138 (492)
T ss_pred cceeeEEEEeccc-ccCCCCceEEEe-C-CcccHH-HHHhccchHHhhhHhhCceEEEeehhccccCCCCcchhccChhh
Confidence 3444444555444 233446776664 3 122211 1211 1233333 588899999996665 3444222111
Q ss_pred --ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEE-EcCCcc
Q 004368 569 --FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAV-AAVPFV 630 (758)
Q Consensus 569 --~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v-~~~~~~ 630 (758)
...-++...|+...+.+|...-......|.++|+||||+|+++.=.++|++..+++ +.+|++
T Consensus 139 lgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 139 LGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVL 203 (492)
T ss_pred hccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceE
Confidence 12335778999999999988866777899999999999999999999999876555 445654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.077 Score=56.54 Aligned_cols=189 Identities=14% Similarity=0.136 Sum_probs=105.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc----cCcceeEEEecCCeEEEEEeCCCCCCceEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL----VGVTASVEWAGNEALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~----~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~ 266 (758)
.+.+..++|||+.|.. |+|..+|-||||+....+-. .+ ..+.. ++-|||.++.|....+++ |.++
T Consensus 467 yiRSckL~pdgrtLiv-----GGeastlsiWDLAapTprikaeltssapaCyA-La~spDakvcFsccsdGn----I~vw 536 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIV-----GGEASTLSIWDLAAPTPRIKAELTSSAPACYA-LAISPDAKVCFSCCSDGN----IAVW 536 (705)
T ss_pred ceeeeEecCCCceEEe-----ccccceeeeeeccCCCcchhhhcCCcchhhhh-hhcCCccceeeeeccCCc----EEEE
Confidence 4678899999999874 66788999999998765422 22 22333 788999988888775542 6666
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc---eeeEEeecCCEE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG---VDTAASHRGNHF 343 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~---~~~~~s~dg~~l 343 (758)
+|-.. ..+..|...... ...+..|+||..|.- ..-. +-|.-+|+..+. .+....-. +.....|.|+|+
T Consensus 537 DLhnq--~~VrqfqGhtDG-ascIdis~dGtklWT-GGlD--ntvRcWDlregr---qlqqhdF~SQIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 537 DLHNQ--TLVRQFQGHTDG-ASCIDISKDGTKLWT-GGLD--NTVRCWDLREGR---QLQQHDFSSQIFSLGYCPTGDWL 607 (705)
T ss_pred Ecccc--eeeecccCCCCC-ceeEEecCCCceeec-CCCc--cceeehhhhhhh---hhhhhhhhhhheecccCCCccce
Confidence 77533 223334332221 124567899988753 2212 334455776543 22211111 112256889988
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 344 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
++-- .+..+.+....++. .-.+.-++.-+....|+..+++.+-+..+|- +-+|+.+
T Consensus 608 avGM-----ens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnl---LnawrtP 663 (705)
T KOG0639|consen 608 AVGM-----ENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNL---LNAWRTP 663 (705)
T ss_pred eeec-----ccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhh---hhhccCc
Confidence 7653 23455555554432 2223333322223346667777765555443 3455554
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0086 Score=59.19 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=50.0
Q ss_pred EEEecCCCccCCCCCCChHHHHHHHcCcE---EEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 519 LLYGYGSYEICNDPAFNSSRLSLLDRGFI---FAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 519 vl~~hGg~~~~~~~~~~~~~~~l~~~G~~---v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
||++||-. ......|......|.++||. ++..++-..... ....... .......++.+.++.+.+. +-.
T Consensus 4 VVlVHG~~-~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~--~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa- 75 (219)
T PF01674_consen 4 VVLVHGTG-GNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGS--PSVQNAH--MSCESAKQLRAFIDAVLAY--TGA- 75 (219)
T ss_dssp EEEE--TT-TTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCHH--THHHHHH--B-HHHHHHHHHHHHHHHHH--HT--
T ss_pred EEEECCCC-cchhhCHHHHHHHHHHcCCCcceeEeccCCCCCCC--Ccccccc--cchhhHHHHHHHHHHHHHh--hCC-
Confidence 56689944 33455688899999999999 788888433321 1111111 1122335566666655543 456
Q ss_pred cEEEEEeChhHHHHHHHHhh
Q 004368 596 KLCIEGRSAGGLLIGAVLNM 615 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~ 615 (758)
+|=|+|||+||.++-+++..
T Consensus 76 kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp -EEEEEETCHHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHHH
Confidence 99999999999998877754
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.021 Score=57.18 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=54.6
Q ss_pred CEEEEecCCCccCCCCCCChHHHHH--------HHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHH
Q 004368 517 PLLLYGYGSYEICNDPAFNSSRLSL--------LDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK 588 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~~~~l--------~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 588 (758)
..|||+||..|+.. .+......+ ....+.++..|+..... .++ |.... ...+-+..+++++.+
T Consensus 5 ~pVlFIhG~~Gs~~--q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s---~~~--g~~l~--~q~~~~~~~i~~i~~ 75 (225)
T PF07819_consen 5 IPVLFIHGNAGSYK--QVRSLASELQRKALLNDNSSHFDFFTVDFNEELS---AFH--GRTLQ--RQAEFLAEAIKYILE 75 (225)
T ss_pred CEEEEECcCCCCHh--HHHHHHHHHhhhhhhccCccceeEEEeccCcccc---ccc--cccHH--HHHHHHHHHHHHHHH
Confidence 56889999444321 111111111 11257788888764221 111 01111 112334456666655
Q ss_pred cC---CCCCCcEEEEEeChhHHHHHHHHhhCC---CceeEEEE
Q 004368 589 NC---YCTKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVA 625 (758)
Q Consensus 589 ~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~ 625 (758)
.. ...+++|.++||||||.++-.++...+ +.++.+|.
T Consensus 76 ~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iit 118 (225)
T PF07819_consen 76 LYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIIT 118 (225)
T ss_pred hhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEE
Confidence 43 467899999999999998887776543 34555554
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.42 Score=48.32 Aligned_cols=130 Identities=9% Similarity=0.027 Sum_probs=85.0
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccC---CCC-CCChHHHHHHHcCcEEEEEecCCCCCCch
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC---NDP-AFNSSRLSLLDRGFIFAIAQIRGGGELGR 561 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~---~~~-~~~~~~~~l~~~G~~v~~~~~RG~g~~G~ 561 (758)
+++..+.+.-|. |++.+.- ++.++.|+||..|.-.-.. ... .+.+.++.++++ +.+.-++.+|+-+--.
T Consensus 22 ~~e~~V~T~~G~-v~V~V~G-----d~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp 94 (326)
T KOG2931|consen 22 CQEHDVETAHGV-VHVTVYG-----DPKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAP 94 (326)
T ss_pred ceeeeecccccc-EEEEEec-----CCCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCc
Confidence 344445555564 6665432 2334678999999731111 111 123556788888 9999999998754212
Q ss_pred hHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 562 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
.+. ...-..+.+|+.+-+..+.+.- .-+-|..+|--+|+++-...|..+|+++-+.|+.++
T Consensus 95 ~~p----~~y~yPsmd~LAd~l~~VL~~f--~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~ 155 (326)
T KOG2931|consen 95 SFP----EGYPYPSMDDLADMLPEVLDHF--GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINC 155 (326)
T ss_pred cCC----CCCCCCCHHHHHHHHHHHHHhc--CcceEEEecccccHHHHHHHHhcChhheeEEEEEec
Confidence 111 1222456777777776666543 347899999999999999999999999999998764
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.014 Score=63.65 Aligned_cols=134 Identities=13% Similarity=0.126 Sum_probs=76.5
Q ss_pred EEEEEEEECCCCceeecc--ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCC--ceeeEE
Q 004368 216 IYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDD--IYSLGL 290 (758)
Q Consensus 216 ~~~l~v~dl~~g~~~~~~--~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~--~~~~~~ 290 (758)
..+|.+|||.+++....- -.+.+.+++||||| .++-+..|. .|+.|+-.+. ...+++.+.+ .....+
T Consensus 699 d~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg-----~~rVy~Prs~---e~pv~Eg~gpvgtRgARi 770 (1012)
T KOG1445|consen 699 DSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG-----TLRVYEPRSR---EQPVYEGKGPVGTRGARI 770 (1012)
T ss_pred cceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCc-----eEEEeCCCCC---CCccccCCCCccCcceeE
Confidence 578999999998765321 12224559999999 677776654 3666665544 3346655432 223356
Q ss_pred EEcCCCcEEEEEecCC-cceEEEEEeCCCCCceEEeeccccce-----eeEEeecCCEEEEEEcCCCCCCcEEEEEeC
Q 004368 291 QASESKKFLFIASESK-ITRFVFYLDVSKPEELRVLTPRVVGV-----DTAASHRGNHFFITRRSDELFNSELLACPV 362 (758)
Q Consensus 291 ~~S~Dg~~l~~~s~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~-----~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~ 362 (758)
.|.=||++|++..-++ ..++|-++|..+-. ...|....-++ ....+.|.. ++|++..+ ...++.+.+
T Consensus 771 ~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~-~~pl~t~~lDvaps~LvP~YD~Ds~-~lfltGKG---D~~v~~yEv 843 (1012)
T KOG1445|consen 771 LWACDGRIVIVVGFDKSSERQVQMYDAQTLD-LRPLYTQVLDVAPSPLVPHYDYDSN-VLFLTGKG---DRFVNMYEV 843 (1012)
T ss_pred EEEecCcEEEEecccccchhhhhhhhhhhcc-CCcceeeeecccCccccccccCCCc-eEEEecCC---CceEEEEEe
Confidence 7889999998876443 23556666665433 22221111111 122455655 56666665 245655554
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.75 Score=50.16 Aligned_cols=200 Identities=13% Similarity=0.092 Sum_probs=112.2
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
-....++++|+++. ..... ...+.++|.++.+.... .......+++++||++.+|+..... ....+...+-.+.
T Consensus 76 p~~i~v~~~~~~vy-v~~~~---~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~-~~~~vsvid~~t~ 150 (381)
T COG3391 76 PAGVAVNPAGNKVY-VTTGD---SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN-GNNTVSVIDAATN 150 (381)
T ss_pred ccceeeCCCCCeEE-EecCC---CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc-CCceEEEEeCCCC
Confidence 34668899999764 33322 24789999877666543 2222445689999995555554321 3345666665554
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEE------eeccccceeeEEeecCCEEEE
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV------LTPRVVGVDTAASHRGNHFFI 345 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~------l~~~~~~~~~~~s~dg~~l~~ 345 (758)
... ..+.....+ .++.++|||..+++.. ...+.|.++|..+.. ... +.....-....++++|..+|+
T Consensus 151 ~~~-~~~~vG~~P---~~~a~~p~g~~vyv~~--~~~~~v~vi~~~~~~-v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 151 KVT-ATIPVGNTP---TGVAVDPDGNKVYVTN--SDDNTVSVIDTSGNS-VVRGSVGSLVGVGTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred eEE-EEEecCCCc---ceEEECCCCCeEEEEe--cCCCeEEEEeCCCcc-eeccccccccccCCCCceEEECCCCCEEEE
Confidence 221 113222223 4678999999988765 455778999976654 332 111111123348999998887
Q ss_pred EEcCCCCCCcEEEEEeCCCCCcceeeecCCCC-ceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 346 TRRSDELFNSELLACPVDNTSETTVLIPHRES-VKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
.-... ....+.+++........+..+.... .....+.+.+..+++.... ...+.+.+..
T Consensus 224 ~~~~~--~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~--~~~V~vid~~ 283 (381)
T COG3391 224 ANDGS--GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ--GGTVSVIDGA 283 (381)
T ss_pred EeccC--CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC--CCeEEEEeCC
Confidence 65543 1357888887653222222222221 1223445556666555433 3446666554
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.2 Score=51.44 Aligned_cols=191 Identities=14% Similarity=0.091 Sum_probs=101.7
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEE-ecCC-eEEEEEeCCCCCCceEEEEEcCCC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEW-AGNE-ALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~w-spDg-~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
..+.|.|||++| ++...+| .|.+++...-+..+.++......+.| +-++ .|+-.+.+ +.|.++.++.+
T Consensus 17 t~i~~d~~gefi-~tcgsdg----~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~-----~tv~~y~fps~ 86 (933)
T KOG1274|consen 17 TLICYDPDGEFI-CTCGSDG----DIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQ-----NTVLRYKFPSG 86 (933)
T ss_pred EEEEEcCCCCEE-EEecCCC----ceEEeecCCcccCCchhhccCceeEEEeecccceEEeecc-----ceEEEeeCCCC
Confidence 345899999955 5555555 47777655543333344422122334 3444 34333322 34888899888
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEEEcCC
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRRSD 350 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~ 350 (758)
+. +.++..-.-+. -.+.++-+|+++++.+.+ ..|-++++.+....+.+.+....+. ..++|.|..|+..+-.
T Consensus 87 ~~-~~iL~Rftlp~--r~~~v~g~g~~iaagsdD---~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d- 159 (933)
T KOG1274|consen 87 EE-DTILARFTLPI--RDLAVSGSGKMIAAGSDD---TAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD- 159 (933)
T ss_pred Cc-cceeeeeeccc--eEEEEecCCcEEEeecCc---eeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecC-
Confidence 65 33332211121 145789999999886544 3467777776552333444333333 3488988877766543
Q ss_pred CCCCcEEEEEeCCCCCcc-ee--eecCCCC-----ceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 351 ELFNSELLACPVDNTSET-TV--LIPHRES-----VKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 351 ~~~~~~L~~~~~~~~~~~-~~--l~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+.|..+++.+.... .+ +.+..+. .....|++.+..+++...++. +.+|+..
T Consensus 160 ----G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~---Vkvy~r~ 218 (933)
T KOG1274|consen 160 ----GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT---VKVYSRK 218 (933)
T ss_pred ----ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe---EEEEccC
Confidence 46777787653221 12 2221111 112345555556655554433 5566655
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.6 Score=44.44 Aligned_cols=242 Identities=11% Similarity=0.040 Sum_probs=125.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccC-cceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG-VTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~-~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+.++.+|+||.+|+-..+ .-.|.++|..+|+.+.. .-.. ...-+.|.... .+.+.+. .....+.+..+
T Consensus 16 ~i~sl~fs~~G~~litss~-----dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt---k~d~tIryLsl 87 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSE-----DDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST---KEDDTIRYLSL 87 (311)
T ss_pred ceeEEEecCCCCEEEEecC-----CCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC---CCCCceEEEEe
Confidence 4678899999999986433 23699999999987763 2221 13346787666 7777665 22345766677
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEc
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRR 348 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~ 348 (758)
-+. +-+.-|.+.. ....++..+|-+.. ++++....+ |.++|+...+ -+-+..-.......++|.|-.+++..+
T Consensus 88 ~dN--kylRYF~GH~-~~V~sL~~sP~~d~-FlS~S~D~t--vrLWDlR~~~-cqg~l~~~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 88 HDN--KYLRYFPGHK-KRVNSLSVSPKDDT-FLSSSLDKT--VRLWDLRVKK-CQGLLNLSGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred ecC--ceEEEcCCCC-ceEEEEEecCCCCe-EEecccCCe--EEeeEecCCC-CceEEecCCCcceeECCCCcEEEEecC
Confidence 655 3444555443 33457788887754 344433333 5556666544 111111111123347888865544433
Q ss_pred CCCCCCcEEEEEeCCC--CCccee-eecCCC--CceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCcee
Q 004368 349 SDELFNSELLACPVDN--TSETTV-LIPHRE--SVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 423 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~--~~~~~~-l~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i 423 (758)
.+ .|-..|+.. .+.... .+.... +..--.|+.+|+.+++....+ .+++++.- .|... ...
T Consensus 161 ~~-----~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s---~~~~lDAf-~G~~~------~tf 225 (311)
T KOG1446|consen 161 SE-----LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS---FIYLLDAF-DGTVK------STF 225 (311)
T ss_pred CC-----eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC---cEEEEEcc-CCcEe------eeE
Confidence 22 444555532 123333 232122 222234566666776655433 24455432 24321 111
Q ss_pred eccCccccc-CCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 424 EFIDPVYSI-DPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 424 ~~p~~~~~i-~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
........+ .+...++|+.-+ ++-+ .-.+|..|++++++.
T Consensus 226 s~~~~~~~~~~~a~ftPds~Fv-l~gs---~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTPDSKFV-LSGS---DDGTIHVWNLETGKK 266 (311)
T ss_pred eeccCCCCcceeEEECCCCcEE-EEec---CCCcEEEEEcCCCcE
Confidence 111101111 123456777554 3332 224688899988874
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.017 Score=58.16 Aligned_cols=112 Identities=16% Similarity=0.210 Sum_probs=65.1
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCc--EEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGF--IFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~--~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 591 (758)
....++||+|| |+......-....+.....|+ .++.+.-+..|.. ..|..+ ...-..+-.++...++.|.+.
T Consensus 16 ~~~~vlvfVHG-yn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~~d--~~~a~~s~~~l~~~L~~L~~~-- 89 (233)
T PF05990_consen 16 PDKEVLVFVHG-YNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYFYD--RESARFSGPALARFLRDLARA-- 89 (233)
T ss_pred CCCeEEEEEeC-CCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhhhh--hhhHHHHHHHHHHHHHHHHhc--
Confidence 45689999999 554433222222232222333 6778887766642 222211 112223446666677777765
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCC---------CceeEEEEcCCccc
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRP---------DLFKAAVAAVPFVD 631 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p---------~~f~a~v~~~~~~d 631 (758)
....+|-|++||||+.++..++.+-. ..|..+|+.+|=+|
T Consensus 90 ~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 90 PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 23589999999999999887776521 24555666665444
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0054 Score=67.33 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=61.1
Q ss_pred CCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHH
Q 004368 532 PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGA 611 (758)
Q Consensus 532 ~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~ 611 (758)
..|...+..|.+.||.+ ..|++|.| .+|.... .....++++.+.++.+.+... ..++.++||||||+++..
T Consensus 108 ~~~~~li~~L~~~GY~~-~~dL~g~g---YDwR~~~---~~~~~~~~Lk~lIe~~~~~~g--~~kV~LVGHSMGGlva~~ 178 (440)
T PLN02733 108 YYFHDMIEQLIKWGYKE-GKTLFGFG---YDFRQSN---RLPETMDGLKKKLETVYKASG--GKKVNIISHSMGGLLVKC 178 (440)
T ss_pred HHHHHHHHHHHHcCCcc-CCCcccCC---CCccccc---cHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECHhHHHHHH
Confidence 44667778999999977 67888755 4565421 112345677777777665422 368999999999999999
Q ss_pred HHhhCCCc----eeEEEEcCC
Q 004368 612 VLNMRPDL----FKAAVAAVP 628 (758)
Q Consensus 612 ~~~~~p~~----f~a~v~~~~ 628 (758)
.+..+|+. .+..|+.++
T Consensus 179 fl~~~p~~~~k~I~~~I~la~ 199 (440)
T PLN02733 179 FMSLHSDVFEKYVNSWIAIAA 199 (440)
T ss_pred HHHHCCHhHHhHhccEEEECC
Confidence 99888874 355555444
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.12 Score=54.24 Aligned_cols=177 Identities=12% Similarity=0.093 Sum_probs=91.4
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc--cCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
..+++++||..||- |++...++||+..+-....... ..-+..+.||||| .|++++.+. ..||-.+-+.
T Consensus 148 k~vaf~~~gs~lat-----gg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~----~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLAT-----GGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADS----ARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeee-----ccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCc----eEEEEeccCc
Confidence 46789999999983 4455689999954443332211 2224568999999 788887652 3466444331
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCC--cEEEEEec--CCcceEEEEEeCCCCC---ceEEeeccccceee-EEeecCCE
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESK--KFLFIASE--SKITRFVFYLDVSKPE---ELRVLTPRVVGVDT-AASHRGNH 342 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg--~~l~~~s~--~~~~~~l~~~d~~~~~---~~~~l~~~~~~~~~-~~s~dg~~ 342 (758)
.-.+ ... .+.+. .+-.+.++.|+ ..+.+... ..+.-.++.+-+-.+. ..+....+...+.. .+|.||+.
T Consensus 219 ~~a~-~t~-~~k~~-~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 219 ALAR-KTP-FSKDE-MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred hhhh-cCC-cccch-hhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 1100 000 11122 22244566655 23333222 2222333333333221 23333444444443 49999999
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC
Q 004368 343 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID 388 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 388 (758)
+++-++++ .+..++...- +.-.++++-....+.++.+..+
T Consensus 296 ~AlGT~dG-----sVai~~~~~l-q~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 296 LALGTMDG-----SVAIYDAKSL-QRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred EEEeccCC-----cEEEEEecee-eeeEeehhhheeeeeeEEEcCC
Confidence 99988854 3555555431 1122555555445566555544
|
|
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.021 Score=58.82 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=70.4
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHH---HcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHH----HHHHHHH
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLL---DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIA----CAEYLIK 588 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~---~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~----~~~~l~~ 588 (758)
.++|+++-|-||... .|......|. ...+.|......|+...... .. .....+.-+++|.++ .++.++.
T Consensus 2 ~~li~~IPGNPGlv~--fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~-~~-~~~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVE--FYEEFLSALYEKLNPQFEILGISHAGHSTSPSN-SK-FSPNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCChHH--HHHHHHHHHHHhCCCCCeeEEecCCCCcCCccc-cc-ccCCCCccCHHHHHHHHHHHHHHHhh
Confidence 578999999777532 1333333444 34899999999888654432 00 001233344455444 4444444
Q ss_pred cCCCCCCcEEEEEeChhHHHHHHHHhhCC---CceeEEEEcCCc
Q 004368 589 NCYCTKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVAAVPF 629 (758)
Q Consensus 589 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~~~ 629 (758)
+..-...++.++|||.|+|+++.++.+.+ ..++.+++.-|.
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPT 121 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPT 121 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCc
Confidence 32224589999999999999999999998 567777777765
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.043 Score=55.24 Aligned_cols=140 Identities=18% Similarity=0.166 Sum_probs=74.0
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEEC---CCCceee---c-cccCc---ceeEEEecCC-eEEEEEeCCCCCCceE
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDI---ETGTPVG---K-PLVGV---TASVEWAGNE-ALVYITMDEILRPDKA 263 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl---~~g~~~~---~-~~~~~---~~~~~wspDg-~l~y~~~~~~~~~~~v 263 (758)
..++||||++||..--+ .++.||.+ +.|+... . .+.+. ...++||+++ +++-++.|..+ +|
T Consensus 233 ~aavSP~GRFia~~gFT-----pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~w---ri 304 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFT-----PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKW---RI 304 (420)
T ss_pred ceeeCCCCcEEEEecCC-----CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcE---EE
Confidence 46899999999865432 23444443 3344321 1 33332 4457899999 77777766654 35
Q ss_pred EEEEcCCCCCCcEEEeeec------CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-ccccee-eE
Q 004368 264 WLHKLEADQSNDICLYHEK------DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGVD-TA 335 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~------~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~~~-~~ 335 (758)
|-.++.-...+|.-++.+. ...--+.++.||.|+.|+++..+ .|-++..++++....+.. ....+. ..
T Consensus 305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs----~l~~~~se~g~~~~~~e~~h~~~Is~is 380 (420)
T KOG2096|consen 305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS----DLKVFASEDGKDYPELEDIHSTTISSIS 380 (420)
T ss_pred eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC----ceEEEEcccCccchhHHHhhcCceeeEE
Confidence 5333221111222222211 11122467899999999886543 355666666551111111 111222 34
Q ss_pred EeecCCEEEEE
Q 004368 336 ASHRGNHFFIT 346 (758)
Q Consensus 336 ~s~dg~~l~~~ 346 (758)
|+++|++++-.
T Consensus 381 ~~~~g~~~atc 391 (420)
T KOG2096|consen 381 YSSDGKYIATC 391 (420)
T ss_pred ecCCCcEEeee
Confidence 89999966543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.065 Score=56.95 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=49.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.||++|..+.=+ +-...|.+||++||+...- ........+.+-||+ .+|++..-+. +|..+++.
T Consensus 260 ~Vrd~~~s~~g~~fLS~-----sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~----ki~~wDiR 330 (503)
T KOG0282|consen 260 PVRDASFNNCGTSFLSA-----SFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDK----KIRQWDIR 330 (503)
T ss_pred hhhhhhccccCCeeeee-----ecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCC----cEEEEecc
Confidence 56678899999987522 2246799999999998763 334445668899999 7777654322 46666666
Q ss_pred CC
Q 004368 270 AD 271 (758)
Q Consensus 270 ~~ 271 (758)
++
T Consensus 331 s~ 332 (503)
T KOG0282|consen 331 SG 332 (503)
T ss_pred ch
Confidence 55
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.17 Score=54.37 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=86.4
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc-----cC--c-ceeEEEecCC-eEEEEEeCCCCCCc
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-----VG--V-TASVEWAGNE-ALVYITMDEILRPD 261 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~-----~~--~-~~~~~wspDg-~l~y~~~~~~~~~~ 261 (758)
..+..-.|.|+.+-...+...+| +++|||+..-+.....+ .+ + ...-+|++|| .|+-...+. .-
T Consensus 269 a~lt~g~whP~~k~~FlT~s~Dg----tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG---SI 341 (641)
T KOG0772|consen 269 AELTCGCWHPDNKEEFLTCSYDG----TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG---SI 341 (641)
T ss_pred eeeeccccccCcccceEEecCCC----cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC---ce
Confidence 45667789999998877776666 68899987543221111 11 1 4556999999 554433333 22
Q ss_pred eEEEEEcCCCCCCcEEEeeec-CC-ceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceE---EeeccccceeeE
Q 004368 262 KAWLHKLEADQSNDICLYHEK-DD-IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELR---VLTPRVVGVDTA 335 (758)
Q Consensus 262 ~v~~~~l~~~~~~~~~v~~~~-~~-~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~---~l~~~~~~~~~~ 335 (758)
++| +.++-........... .+ .-..++.+|.||++|+-.+. .++ |-++|+...+ ++. -|.....+....
T Consensus 342 Q~W--~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-D~t--LKvWDLrq~kkpL~~~tgL~t~~~~tdc~ 416 (641)
T KOG0772|consen 342 QIW--DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF-DDT--LKVWDLRQFKKPLNVRTGLPTPFPGTDCC 416 (641)
T ss_pred eee--ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC-CCc--eeeeeccccccchhhhcCCCccCCCCccc
Confidence 344 3333322222222221 22 12346889999999864322 233 4555666543 111 122223334456
Q ss_pred EeecCCEEEEEEcCC-CCCCcEEEEEeCCC
Q 004368 336 ASHRGNHFFITRRSD-ELFNSELLACPVDN 364 (758)
Q Consensus 336 ~s~dg~~l~~~s~~~-~~~~~~L~~~~~~~ 364 (758)
|||+.+.|+--+... +...+.|+.+|.-+
T Consensus 417 FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 417 FSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred cCCCceEEEecccccCCCCCceEEEEeccc
Confidence 999887554333321 12234677776543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.035 Score=56.85 Aligned_cols=169 Identities=16% Similarity=0.137 Sum_probs=101.1
Q ss_pred EEeecccccCC----CCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEE
Q 004368 177 LILDENVKAEG----RGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVY 251 (758)
Q Consensus 177 vllD~n~~~~~----~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y 251 (758)
-|+|++....- -|+-++..+.++|-...|.-+... ...|.++|+.++.++.. .+.-....++|+| ..+-|
T Consensus 170 ~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s----DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF 244 (433)
T KOG0268|consen 170 DIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS----DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNF 244 (433)
T ss_pred eecccccCCccceeecCCCceeEEecCCCcchheeeecc----CCceEEEecccCCccceeeeeccccceecCc-cccce
Confidence 36776432211 255577788889988877644422 23599999999988764 3333356699999 44556
Q ss_pred EEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEE--eeccc
Q 004368 252 ITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV--LTPRV 329 (758)
Q Consensus 252 ~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~--l~~~~ 329 (758)
+..+ +.+.+|.+++..-. ....++.+. ..-.+++.+||-|+-++-.+-++ .|.+++...+. -+- -+++.
T Consensus 245 ~~a~---ED~nlY~~DmR~l~-~p~~v~~dh-vsAV~dVdfsptG~EfvsgsyDk---sIRIf~~~~~~-SRdiYhtkRM 315 (433)
T KOG0268|consen 245 VAAN---EDHNLYTYDMRNLS-RPLNVHKDH-VSAVMDVDFSPTGQEFVSGSYDK---SIRIFPVNHGH-SRDIYHTKRM 315 (433)
T ss_pred eecc---ccccceehhhhhhc-ccchhhccc-ceeEEEeccCCCcchhccccccc---eEEEeecCCCc-chhhhhHhhh
Confidence 6644 34568888876442 234454432 23356788999999876433332 24555555443 221 23344
Q ss_pred cceeeE-EeecCCEEEEEEcCCCCCCcEEEEEeC
Q 004368 330 VGVDTA-ASHRGNHFFITRRSDELFNSELLACPV 362 (758)
Q Consensus 330 ~~~~~~-~s~dg~~l~~~s~~~~~~~~~L~~~~~ 362 (758)
..+... ||.|.++++- ..+ ..|.+|++...
T Consensus 316 q~V~~Vk~S~Dskyi~S--GSd-d~nvRlWka~A 346 (433)
T KOG0268|consen 316 QHVFCVKYSMDSKYIIS--GSD-DGNVRLWKAKA 346 (433)
T ss_pred heeeEEEEeccccEEEe--cCC-Ccceeeeecch
Confidence 444443 8999885443 333 34789998765
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.11 Score=60.44 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=50.4
Q ss_pred EEeeEEECCCCCEEEE-EEeCCCCeEEEEEEEECCCCc--eeeccccCcceeEEE--ecCC--eEEEEEeCCCCC-----
Q 004368 192 SVGCFQVSPDNKLVAY-AEDTKGDEIYTVYVIDIETGT--PVGKPLVGVTASVEW--AGNE--ALVYITMDEILR----- 259 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy-~~~~~G~e~~~l~v~dl~~g~--~~~~~~~~~~~~~~w--spDg--~l~y~~~~~~~~----- 259 (758)
.+-.|.|||||++||| +.-++=+....|||.||.+.. .+.+.++++.. +.| ...| .|.|++....+.
T Consensus 351 ~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aai-prwrv~e~gdt~ivyv~~a~nn~d~~~~ 429 (912)
T TIGR02171 351 SVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAI-PRWRVLENGDTVIVYVSDASNNKDDATF 429 (912)
T ss_pred ceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccc-cceEecCCCCeEEEEEcCCCCCcchhhh
Confidence 4567999999999999 544440115789999998643 34445565533 456 5777 599997644332
Q ss_pred -CceEEEEEcCCC
Q 004368 260 -PDKAWLHKLEAD 271 (758)
Q Consensus 260 -~~~v~~~~l~~~ 271 (758)
....|.+....+
T Consensus 430 ~~~stw~v~f~~g 442 (912)
T TIGR02171 430 AAYSTWQVPFANG 442 (912)
T ss_pred hhcceEEEEecCC
Confidence 334566665544
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.02 E-value=2.3 Score=43.99 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=69.5
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec--cccCc--ceeEEEecCCeEEEEEeCCCCCCc-eEEEEEcC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGV--TASVEWAGNEALVYITMDEILRPD-KAWLHKLE 269 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~--~~~~~wspDg~l~y~~~~~~~~~~-~v~~~~l~ 269 (758)
.+..+|+...+++...+.| .-+.++|..+|+.... ..++. ++.-+|||||+++|++.++-.... .|-+++..
T Consensus 9 ~~a~~p~~~~avafaRRPG---~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPG---TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ceeeCCCCCeEEEEEeCCC---cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 4678995555555555567 3588999999998753 22332 566799999977788765432222 34455654
Q ss_pred CCCCCcEEEeeecCCce-eeEEEEcCCCcEEEEEecC------Cc---------ceEEEEEeCCCCC
Q 004368 270 ADQSNDICLYHEKDDIY-SLGLQASESKKFLFIASES------KI---------TRFVFYLDVSKPE 320 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~-~~~~~~S~Dg~~l~~~s~~------~~---------~~~l~~~d~~~~~ 320 (758)
.+ -..+-+-..... --.+.+.|||+.|++.... .+ ...|.++|..+++
T Consensus 86 ~~---~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ 149 (305)
T PF07433_consen 86 RG---YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA 149 (305)
T ss_pred CC---cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc
Confidence 22 112211111000 0135689999999886422 00 1357778777776
|
|
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.035 Score=53.24 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=75.6
Q ss_pred CEEEEecCCCccCCC--CCCChHHHHHHHcCcEEEEEecCCCC-CCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 517 PLLLYGYGSYEICND--PAFNSSRLSLLDRGFIFAIAQIRGGG-ELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 517 P~vl~~hGg~~~~~~--~~~~~~~~~l~~~G~~v~~~~~RG~g-~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
-.|||+ ||.+.... +.-.....++.+.+|-.+.+..|-+- +||.. .-..+.+|+..+++++...++.
T Consensus 37 ~~vvfi-GGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~--------slk~D~edl~~l~~Hi~~~~fS- 106 (299)
T KOG4840|consen 37 VKVVFI-GGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTF--------SLKDDVEDLKCLLEHIQLCGFS- 106 (299)
T ss_pred EEEEEE-cccCCCccccccHHHHHHHHhhccceeeeeeccccccccccc--------cccccHHHHHHHHHHhhccCcc-
Confidence 344444 55554432 21223345778889999999998765 35542 2235678999999999877764
Q ss_pred CCcEEEEEeChhHHHHHHHHhh--CCCceeEEEEcCCccchh
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPFVDVL 633 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~~~d~~ 633 (758)
..|.++|||-|..=++..+++ .|...+|+|+.+|+.|-.
T Consensus 107 -t~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 107 -TDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred -cceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 599999999999977777754 356789999999999954
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.42 Score=53.76 Aligned_cols=184 Identities=17% Similarity=0.172 Sum_probs=99.2
Q ss_pred EEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc--ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEE----Ec
Q 004368 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH----KL 268 (758)
Q Consensus 196 ~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~----~l 268 (758)
..+=|.+++|..+.. ...|.|+|+++....... -++...+++-+||+ .++-.+.|.. -+.|-. ..
T Consensus 418 ~~Fvpgd~~Iv~G~k-----~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt---VkfWdf~l~~~~ 489 (888)
T KOG0306|consen 418 SKFVPGDRYIVLGTK-----NGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT---VKFWDFKLVVSV 489 (888)
T ss_pred EEecCCCceEEEecc-----CCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE---EEEEeEEEEecc
Confidence 356677777765443 236888999888766531 14456667888999 5544443332 122211 11
Q ss_pred CCCCCCcEE------EeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCC
Q 004368 269 EADQSNDIC------LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGN 341 (758)
Q Consensus 269 ~~~~~~~~~------v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~ 341 (758)
++.+ +.++ +++-.+ -.+.++.||||++|+++--+ .+-.||.+|.=.- ..-|..+.-- ....+|||++
T Consensus 490 ~gt~-~k~lsl~~~rtLel~d--dvL~v~~Spdgk~LaVsLLd-nTVkVyflDtlKF--flsLYGHkLPV~smDIS~DSk 563 (888)
T KOG0306|consen 490 PGTQ-KKVLSLKHTRTLELED--DVLCVSVSPDGKLLAVSLLD-NTVKVYFLDTLKF--FLSLYGHKLPVLSMDISPDSK 563 (888)
T ss_pred Cccc-ceeeeeccceEEeccc--cEEEEEEcCCCcEEEEEecc-CeEEEEEecceee--eeeecccccceeEEeccCCcC
Confidence 1111 1111 111112 23567899999999886543 3456777764221 1112222111 2234899988
Q ss_pred EEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCe
Q 004368 342 HFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGL 399 (758)
Q Consensus 342 ~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 399 (758)
.++ ....+ .|.+++=.|..+ -.+-++.+++.+.-..|.+ ..++++++..++.
T Consensus 564 liv-TgSAD--KnVKiWGLdFGD--CHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~k 615 (888)
T KOG0306|consen 564 LIV-TGSAD--KNVKIWGLDFGD--CHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGK 615 (888)
T ss_pred eEE-eccCC--CceEEeccccch--hhhhhhcccCceeEEEEcc-cceeEEEecCcce
Confidence 443 33333 367777766532 2333777765433333434 5678888888775
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.96 E-value=2.1 Score=43.23 Aligned_cols=115 Identities=13% Similarity=0.082 Sum_probs=67.4
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc---cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---VGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~---~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+....|+|||..+| .|+-..+|++|++-+...-.-.+ .+++.++.|++|+..+|....+. .|+.+++
T Consensus 49 eI~~~~F~P~gs~~a-----SgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk----~v~~wD~ 119 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFA-----SGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK----TVRGWDA 119 (338)
T ss_pred eEEEEEECCCCCeEe-----ecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc----eEEEEec
Confidence 466779999999998 34445789999986644321122 23466789999995445544332 4788888
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
.+++. ..-+.. +..+.-.+..+.-|-.|+.+..+..+-+|| |..+.+
T Consensus 120 ~tG~~--~rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~--D~R~k~ 166 (338)
T KOG0265|consen 120 ETGKR--IRKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLW--DIRKKE 166 (338)
T ss_pred cccee--eehhcc-ccceeeecCccccCCeEEEecCCCceEEEE--eecccc
Confidence 87732 222221 223332333444566666655555555555 554433
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.26 Score=51.90 Aligned_cols=118 Identities=17% Similarity=0.145 Sum_probs=72.4
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+.+.++.|||-.++ .|.....|.|||++++.... .+++ -+..+.||.+|.++.+..+++ .|.+++|
T Consensus 349 ~~ts~~fHpDgLifg-----tgt~d~~vkiwdlks~~~~a-~Fpght~~vk~i~FsENGY~Lat~add~----~V~lwDL 418 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFG-----TGTPDGVVKIWDLKSQTNVA-KFPGHTGPVKAISFSENGYWLATAADDG----SVKLWDL 418 (506)
T ss_pred eeEEeeEcCCceEEe-----ccCCCceEEEEEcCCccccc-cCCCCCCceeEEEeccCceEEEEEecCC----eEEEEEe
Confidence 355667777776654 35556799999999887544 3333 256689999994444544432 2778888
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEe
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL 325 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l 325 (758)
.....-.....++.. -..++.+...|++|++. ...-.||..+-.+.. |+.+
T Consensus 419 RKl~n~kt~~l~~~~--~v~s~~fD~SGt~L~~~---g~~l~Vy~~~k~~k~-W~~~ 469 (506)
T KOG0289|consen 419 RKLKNFKTIQLDEKK--EVNSLSFDQSGTYLGIA---GSDLQVYICKKKTKS-WTEI 469 (506)
T ss_pred hhhcccceeeccccc--cceeEEEcCCCCeEEee---cceeEEEEEeccccc-ceee
Confidence 755322222222221 13356788899999886 233456776655554 6554
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.46 Score=48.30 Aligned_cols=147 Identities=17% Similarity=0.170 Sum_probs=81.5
Q ss_pred CCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-----cccC--cceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 199 SPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-----PLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 199 SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-----~~~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
-|+-.+.|.++.. .-|++||.-+|+.+.- ..+. ...++.||||| +| |...... |...++..
T Consensus 120 qP~t~l~a~ssr~-----~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeql-faGykrc-----irvFdt~R 188 (406)
T KOG2919|consen 120 QPSTNLFAVSSRD-----QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQL-FAGYKRC-----IRVFDTSR 188 (406)
T ss_pred CCccceeeecccc-----CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeE-eecccce-----EEEeeccC
Confidence 4677777765542 4599999999998631 1111 13458999999 55 4444321 33334321
Q ss_pred CCCCcEEEeee------cCCceeeEEEEcC-CCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCE
Q 004368 271 DQSNDICLYHE------KDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNH 342 (758)
Q Consensus 271 ~~~~~~~v~~~------~~~~~~~~~~~S~-Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~ 342 (758)
.. .+-.++.. ....+...+++|| |.+.+++.+-. ....||.-| +..++..+..+..++.. .|-+||.+
T Consensus 189 pG-r~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-q~~giy~~~--~~~pl~llggh~gGvThL~~~edGn~ 264 (406)
T KOG2919|consen 189 PG-RDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-QRVGIYNDD--GRRPLQLLGGHGGGVTHLQWCEDGNK 264 (406)
T ss_pred CC-CCCcchhhhhcccccccceeeeeeccCCCCcceeeeccc-ceeeeEecC--CCCceeeecccCCCeeeEEeccCcCe
Confidence 11 22222211 1122333466777 44566654432 223344333 33346666666666654 48999999
Q ss_pred EEEEEcCCCCCCcEEEEEeCCC
Q 004368 343 FFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
|+.-+..+ -+|...|+..
T Consensus 265 lfsGaRk~----dkIl~WDiR~ 282 (406)
T KOG2919|consen 265 LFSGARKD----DKILCWDIRY 282 (406)
T ss_pred ecccccCC----CeEEEEeehh
Confidence 88766654 4688888764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.85 E-value=2.3 Score=44.02 Aligned_cols=63 Identities=21% Similarity=0.141 Sum_probs=42.1
Q ss_pred CeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc--cCc-ceeEEEecCC-eEEE
Q 004368 189 GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGV-TASVEWAGNE-ALVY 251 (758)
Q Consensus 189 ~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~-~~~~~wspDg-~l~y 251 (758)
+-...+.-.+||||++|.-+...-.+.+-.|-|+|++.+-.+...+ .++ --.+.|.||| +|+.
T Consensus 49 gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvV 115 (305)
T PF07433_consen 49 GRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVV 115 (305)
T ss_pred CCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEE
Confidence 4455667799999999877766555557889999998433222222 333 3457899999 6543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.06 Score=59.66 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=74.3
Q ss_pred CCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCC-eEEEEEeCCCCCCce
Q 004368 187 GRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDK 262 (758)
Q Consensus 187 ~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg-~l~y~~~~~~~~~~~ 262 (758)
+|| +.+.....||+|+.||=.....--+...|++|+..+=.... .+.+ .+..++||||| .|+-++.|+. ..
T Consensus 523 GHG-yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-~L~~HsLTVT~l~FSpdg~~LLsvsRDRt---~s 597 (764)
T KOG1063|consen 523 GHG-YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-ELEGHSLTVTRLAFSPDGRYLLSVSRDRT---VS 597 (764)
T ss_pred cCc-eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh-eecccceEEEEEEECCCCcEEEEeecCce---EE
Confidence 344 57888999999999998776666677899999976533322 2332 26779999999 5665655442 23
Q ss_pred EEEEEcCCCCCCcEEEe--eecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEe
Q 004368 263 AWLHKLEADQSNDICLY--HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLD 315 (758)
Q Consensus 263 v~~~~l~~~~~~~~~v~--~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d 315 (758)
|| ....+. .+..-| .....++..+.+|+||+++ ++++++..+-.+|...
T Consensus 598 l~--~~~~~~-~~e~~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 598 LY--EVQEDI-KDEFRFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEEP 648 (764)
T ss_pred ee--eeeccc-chhhhhccccccceEEEEcccCcccce-eEEecCCceEEEEecc
Confidence 44 332221 111112 2234455667889999999 4445544445555543
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.011 Score=63.22 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=70.9
Q ss_pred EEEEecCCCccCCCCCCChH-HHHHHH-cCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHc---CCC
Q 004368 518 LLLYGYGSYEICNDPAFNSS-RLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN---CYC 592 (758)
Q Consensus 518 ~vl~~hGg~~~~~~~~~~~~-~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~ 592 (758)
++|++|||.--+..++.... ...|+. ...+|+.+|||-|. +|.=+........+.-.+-|..=|++|+.++ -..
T Consensus 137 VlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~-FGFL~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~aFGG 215 (601)
T KOG4389|consen 137 VLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGA-FGFLYLPGHPEAPGNMGLLDQQLALQWVQENIAAFGG 215 (601)
T ss_pred EEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeecc-ceEEecCCCCCCCCccchHHHHHHHHHHHHhHHHhCC
Confidence 88999997443334433222 234444 35788999999542 3322111111223333457888899999776 335
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhCC---CceeEEEEcCCccc
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVAAVPFVD 631 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~~~~d 631 (758)
||++|.++|.|+|..-+.+=+.. | .+|+-+|+++|-.+
T Consensus 216 np~~vTLFGESAGaASv~aHLls-P~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 216 NPSRVTLFGESAGAASVVAHLLS-PGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CcceEEEeccccchhhhhheecC-CCchhhHHHHHhhcCCCC
Confidence 99999999999999855433332 4 37999999988654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=95.82 E-value=2.1 Score=53.05 Aligned_cols=196 Identities=17% Similarity=0.177 Sum_probs=103.0
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc------------------CcceeEEEecCCeEEEEEe
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV------------------GVTASVEWAGNEALVYITM 254 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~------------------~~~~~~~wspDg~l~y~~~ 254 (758)
..++.++++|..| |..|..+ ..|+++|+.++........ +...+++++|++..+|++.
T Consensus 626 P~GIavd~~gn~L-YVaDt~n---~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 626 PQGLAYNAKKNLL-YVADTEN---HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CcEEEEeCCCCEE-EEEeCCC---ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 3567888888875 5555443 4688889887765432100 0123578999663334443
Q ss_pred CCCCCCceEEEEEcCCCCCCcEEEeeec------C------C--ceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 255 DEILRPDKAWLHKLEADQSNDICLYHEK------D------D--IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 255 ~~~~~~~~v~~~~l~~~~~~~~~v~~~~------~------~--~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
.. .++|+.++..++. ...+... + . ..-.+++++|||++|++... ..+.|+++|++++.
T Consensus 702 ~~---~~~I~v~d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 702 AG---QHQIWEYNISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGG 773 (1057)
T ss_pred CC---CCeEEEEECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCc
Confidence 22 2357777765441 1122110 0 0 01125789999999887543 34678899987754
Q ss_pred ceEEeeccc-------------cc----------eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCC--
Q 004368 321 ELRVLTPRV-------------VG----------VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHR-- 375 (758)
Q Consensus 321 ~~~~l~~~~-------------~~----------~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~-- 375 (758)
...+.... ++ ....++++|+ +|+. +.. +.+|.++|.++. ....+....
T Consensus 774 -~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVA-Ds~---N~rIrviD~~tg-~v~tiaG~G~~ 846 (1057)
T PLN02919 774 -SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVA-DSY---NHKIKKLDPATK-RVTTLAGTGKA 846 (1057)
T ss_pred -EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEE-ECC---CCEEEEEECCCC-eEEEEeccCCc
Confidence 32222100 00 0123677776 5544 332 568888887652 212222111
Q ss_pred ----------CCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 376 ----------ESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 376 ----------~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
.-....++.++.+ .+++.- .+...|+++++..
T Consensus 847 G~~dG~~~~a~l~~P~GIavd~dG~lyVaD--t~Nn~Irvid~~~ 889 (1057)
T PLN02919 847 GFKDGKALKAQLSEPAGLALGENGRLFVAD--TNNSLIRYLDLNK 889 (1057)
T ss_pred CCCCCcccccccCCceEEEEeCCCCEEEEE--CCCCEEEEEECCC
Confidence 0012345666544 444433 3334688888874
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.1 Score=55.72 Aligned_cols=146 Identities=20% Similarity=0.198 Sum_probs=86.7
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
..++|||.| |+|+.-.+| +|.||||.....++ .+.+ ..+.+.-|+|| +|+--..|. .|..+++.+
T Consensus 514 ALa~spDak-vcFsccsdG----nI~vwDLhnq~~Vr-qfqGhtDGascIdis~dGtklWTGGlDn-----tvRcWDlre 582 (705)
T KOG0639|consen 514 ALAISPDAK-VCFSCCSDG----NIAVWDLHNQTLVR-QFQGHTDGASCIDISKDGTKLWTGGLDN-----TVRCWDLRE 582 (705)
T ss_pred hhhcCCccc-eeeeeccCC----cEEEEEcccceeee-cccCCCCCceeEEecCCCceeecCCCcc-----ceeehhhhh
Confidence 457899987 578877667 59999998776655 3322 35668899999 665333333 366777765
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEEcC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~ 349 (758)
+ ....-++- ..-.+++...|.|.||++...+ +.++++...+.+ .-.|.-.+.-+.. -|++-|+|++- +..
T Consensus 583 g--rqlqqhdF--~SQIfSLg~cP~~dWlavGMen---s~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvS-tGk 653 (705)
T KOG0639|consen 583 G--RQLQQHDF--SSQIFSLGYCPTGDWLAVGMEN---SNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVS-TGK 653 (705)
T ss_pred h--hhhhhhhh--hhhheecccCCCccceeeeccc---CcEEEEecCCcc-ceeecccccEEEEEEecccCceeee-cCc
Confidence 5 22212111 1123467789999999986543 457888776655 3333333222222 28888986553 333
Q ss_pred CCCCCcEEEEEeC
Q 004368 350 DELFNSELLACPV 362 (758)
Q Consensus 350 ~~~~~~~L~~~~~ 362 (758)
+. -...|+++-
T Consensus 654 Dn--lLnawrtPy 664 (705)
T KOG0639|consen 654 DN--LLNAWRTPY 664 (705)
T ss_pred hh--hhhhccCcc
Confidence 31 233555543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.22 Score=52.20 Aligned_cols=157 Identities=13% Similarity=0.073 Sum_probs=81.5
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-cc--CcceeEEEecCC-e-EEEEEe-CCCCCCceE
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LV--GVTASVEWAGNE-A-LVYITM-DEILRPDKA 263 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~--~~~~~~~wspDg-~-l~y~~~-~~~~~~~~v 263 (758)
..+.+..+||||+.||+.... ...||++.+|..+.. + .. .......|+.|+ + .+|+.. ......-.+
T Consensus 187 ~eV~DL~FS~dgk~lasig~d------~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~ 260 (398)
T KOG0771|consen 187 AEVKDLDFSPDGKFLASIGAD------SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRL 260 (398)
T ss_pred CccccceeCCCCcEEEEecCC------ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeE
Confidence 468889999999999987642 578999999965532 2 11 125567888887 2 222222 111111112
Q ss_pred EEEEcCCCCCCcEEEeeec--CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce---eeEEee
Q 004368 264 WLHKLEADQSNDICLYHEK--DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV---DTAASH 338 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~--~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~---~~~~s~ 338 (758)
+...+-.+ ...+..... ...-..+...|+||+++++.+.+ ..|-++++.+-+ ...+.++.... ...|+|
T Consensus 261 ~~~~~w~~--~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d---GsVai~~~~~lq-~~~~vk~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 261 CDISLWSG--SNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD---GSVAIYDAKSLQ-RLQYVKEAHLGFVTGLTFSP 334 (398)
T ss_pred EEeeeecc--ccccchhhhhhccCcceeEEEcCCCcEEEEeccC---CcEEEEEeceee-eeEeehhhheeeeeeEEEcC
Confidence 22222221 111111111 11112356789999999997763 335566665433 22233322211 123788
Q ss_pred cCCEEEEEEcCCCCCCcEEEEEeC
Q 004368 339 RGNHFFITRRSDELFNSELLACPV 362 (758)
Q Consensus 339 dg~~l~~~s~~~~~~~~~L~~~~~ 362 (758)
|.+.+.-++... ...|..+.+
T Consensus 335 dsr~~~svSs~~---~~~v~~l~v 355 (398)
T KOG0771|consen 335 DSRYLASVSSDN---EAAVTKLAV 355 (398)
T ss_pred CcCcccccccCC---ceeEEEEee
Confidence 877665543332 244555544
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=2.6 Score=42.51 Aligned_cols=169 Identities=14% Similarity=0.151 Sum_probs=94.2
Q ss_pred CCceEEeecccccCCC----CeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCC--c---eeeccccC---ccee
Q 004368 173 PPEHLILDENVKAEGR----GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG--T---PVGKPLVG---VTAS 240 (758)
Q Consensus 173 ~~~~vllD~n~~~~~~----~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g--~---~~~~~~~~---~~~~ 240 (758)
++.-++.|.-+-.+.+ ....+-..++||.|++||-. +-....-|+++.+. + .+...+.+ ..+.
T Consensus 76 DGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcG-----GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylSc 150 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACG-----GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSC 150 (343)
T ss_pred CCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEec-----CcCceeEEEecccccccccceeeeeecCccceeEE
Confidence 3556777753322222 23466678899999999953 22345556666643 2 11112333 2455
Q ss_pred EEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcC-CCcEEEEEecCCcceEEEEEeCCCC
Q 004368 241 VEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKP 319 (758)
Q Consensus 241 ~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~-Dg~~l~~~s~~~~~~~l~~~d~~~~ 319 (758)
-.|.+|+.|+-.+.|. .-.++++.++ ..+..|..... -.++++.+| |++.. ++........|| |+..+
T Consensus 151 C~f~dD~~ilT~SGD~-----TCalWDie~g--~~~~~f~GH~g-DV~slsl~p~~~ntF-vSg~cD~~aklW--D~R~~ 219 (343)
T KOG0286|consen 151 CRFLDDNHILTGSGDM-----TCALWDIETG--QQTQVFHGHTG-DVMSLSLSPSDGNTF-VSGGCDKSAKLW--DVRSG 219 (343)
T ss_pred EEEcCCCceEecCCCc-----eEEEEEcccc--eEEEEecCCcc-cEEEEecCCCCCCeE-Eecccccceeee--eccCc
Confidence 6888888775444332 3556788887 45667765433 345788899 77764 444444444444 66555
Q ss_pred CceEEeeccccceeeE-EeecCCEEEEEEcCCCCCCcEEEEE
Q 004368 320 EELRVLTPRVVGVDTA-ASHRGNHFFITRRSDELFNSELLAC 360 (758)
Q Consensus 320 ~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~~L~~~ 360 (758)
...+.+..++.++... |-|+|..|+ +..+ ...-+||-+
T Consensus 220 ~c~qtF~ghesDINsv~ffP~G~afa--tGSD-D~tcRlyDl 258 (343)
T KOG0286|consen 220 QCVQTFEGHESDINSVRFFPSGDAFA--TGSD-DATCRLYDL 258 (343)
T ss_pred ceeEeecccccccceEEEccCCCeee--ecCC-CceeEEEee
Confidence 4244444454444433 778887544 4433 123455543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=95.74 E-value=2.9 Score=50.94 Aligned_cols=187 Identities=13% Similarity=0.112 Sum_probs=99.7
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEE----ECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCC----CCCc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVI----DIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEI----LRPD 261 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~----dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~----~~~~ 261 (758)
.+-++.+-+|...|.+... +| +|.++ +..+.+.... .++.....++||||+ .+++++.... .+..
T Consensus 77 ~ivs~~yl~d~~~l~~~~~-~G----di~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALA-SG----DIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred cEEEEEeccCCCcEEEEEC-Cc----eEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 4667777888887766654 33 46666 4444443322 445456678999999 6666654321 0000
Q ss_pred eE--------------EEEEcCCCCCCcEEEeee--------------------c---CCceeeEEEEcCCCcEEEEEec
Q 004368 262 KA--------------WLHKLEADQSNDICLYHE--------------------K---DDIYSLGLQASESKKFLFIASE 304 (758)
Q Consensus 262 ~v--------------~~~~l~~~~~~~~~v~~~--------------------~---~~~~~~~~~~S~Dg~~l~~~s~ 304 (758)
++ -.+.+|=|. ..+.|.+ . .......++|-.||+|+++++-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGk--KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGK--KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCc--ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence 00 011222111 1111100 0 1112356889999999999885
Q ss_pred C--Cc-ceEEEEEeCCCCCceEEeeccccceee--EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecC-CCCc
Q 004368 305 S--KI-TRFVFYLDVSKPEELRVLTPRVVGVDT--AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPH-RESV 378 (758)
Q Consensus 305 ~--~~-~~~l~~~d~~~~~~~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~-~~~~ 378 (758)
. .+ .+.+.+++-+ |. +.-......+.+. .|-|.|..++-..... ....|....-++--...-.++. ..+.
T Consensus 230 ~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~--~~~~VvFfErNGLrhgeF~l~~~~~~~ 305 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLP--DRHDVVFFERNGLRHGEFTLRFDPEEE 305 (928)
T ss_pred EcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcC--CCcEEEEEecCCcEeeeEecCCCCCCc
Confidence 3 33 4566666665 43 5544444455443 4999999877766543 3456666665442111122221 2344
Q ss_pred eeeeEEEeCCE
Q 004368 379 KLQDIQLFIDH 389 (758)
Q Consensus 379 ~~~~~~~~~~~ 389 (758)
.+..+.|..+.
T Consensus 306 ~v~~l~Wn~ds 316 (928)
T PF04762_consen 306 KVIELAWNSDS 316 (928)
T ss_pred eeeEEEECCCC
Confidence 56777777654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1 Score=43.80 Aligned_cols=157 Identities=13% Similarity=0.094 Sum_probs=79.1
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCCeEEEEEe-CCC----------C
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYITM-DEI----------L 258 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg~l~y~~~-~~~----------~ 258 (758)
+-....|-|...+| .++..-.+++||++||+..+. +.+ -...+.|..++.+++... |.. .
T Consensus 62 VlD~~~s~Dnskf~-----s~GgDk~v~vwDV~TGkv~Rr-~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ 135 (307)
T KOG0316|consen 62 VLDAALSSDNSKFA-----SCGGDKAVQVWDVNTGKVDRR-FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF 135 (307)
T ss_pred eeeccccccccccc-----cCCCCceEEEEEcccCeeeee-cccccceeeEEEecCcceEEEeccccceeEEEEcccCCC
Confidence 33456677777776 233357899999999998762 222 245577766665555432 221 1
Q ss_pred CCceE--------EEEEcCC-----C-CCCcEEEeeecCCc--------eeeEEEEcCCCcEEEEEecCCcceEEEEEeC
Q 004368 259 RPDKA--------WLHKLEA-----D-QSNDICLYHEKDDI--------YSLGLQASESKKFLFIASESKITRFVFYLDV 316 (758)
Q Consensus 259 ~~~~v--------~~~~l~~-----~-~~~~~~v~~~~~~~--------~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~ 316 (758)
+|-|+ .-+++.. + ....+..|.-.... -..++++|+||...++.+-+ +.|.++|-
T Consensus 136 ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~---stlrLlDk 212 (307)
T KOG0316|consen 136 EPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLD---STLRLLDK 212 (307)
T ss_pred CccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeecc---ceeeeccc
Confidence 11111 1111110 0 00111222111100 11246789999988876644 34788888
Q ss_pred CCCCceEEeeccccceeeE----EeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 317 SKPEELRVLTPRVVGVDTA----ASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~----~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
++++ +-...++..+.+|- +.. ....++...+ .+.+|.+|+.+
T Consensus 213 ~tGk-lL~sYkGhkn~eykldc~l~q-sdthV~sgSE----DG~Vy~wdLvd 258 (307)
T KOG0316|consen 213 ETGK-LLKSYKGHKNMEYKLDCCLNQ-SDTHVFSGSE----DGKVYFWDLVD 258 (307)
T ss_pred chhH-HHHHhcccccceeeeeeeecc-cceeEEeccC----CceEEEEEecc
Confidence 8876 32222222233332 322 2334444333 36788888754
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.8 Score=47.83 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=72.5
Q ss_pred eeEEECCCCCE-EEEEEeCCCCeEEEEEEEECCCCceee-c-----cccC---cceeEEEecCC-eEEEEEeCCCCCCce
Q 004368 194 GCFQVSPDNKL-VAYAEDTKGDEIYTVYVIDIETGTPVG-K-----PLVG---VTASVEWAGNE-ALVYITMDEILRPDK 262 (758)
Q Consensus 194 ~~~~~SPDG~~-lAy~~~~~G~e~~~l~v~dl~~g~~~~-~-----~~~~---~~~~~~wspDg-~l~y~~~~~~~~~~~ 262 (758)
-...|.|=... || +|+|..+|.||.+-.+-... + .+.+ ..+-++|.|-. -++.++. ..+.
T Consensus 85 LDi~w~PfnD~vIA-----SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag----~Dn~ 155 (472)
T KOG0303|consen 85 LDIDWCPFNDCVIA-----SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG----SDNT 155 (472)
T ss_pred cccccCccCCceee-----cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc----CCce
Confidence 35578885443 44 58888999999876543321 1 1222 25668999887 5555543 2346
Q ss_pred EEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 263 AWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 263 v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
|.+++++++. ..+.+. .+....+++|+.||..|.-+..+ ..|.++|..+++
T Consensus 156 v~iWnv~tge--ali~l~--hpd~i~S~sfn~dGs~l~TtckD---KkvRv~dpr~~~ 206 (472)
T KOG0303|consen 156 VSIWNVGTGE--ALITLD--HPDMVYSMSFNRDGSLLCTTCKD---KKVRVIDPRRGT 206 (472)
T ss_pred EEEEeccCCc--eeeecC--CCCeEEEEEeccCCceeeeeccc---ceeEEEcCCCCc
Confidence 8999999983 333333 56667788999999988654433 457888888776
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.25 Score=53.17 Aligned_cols=143 Identities=11% Similarity=0.099 Sum_probs=84.3
Q ss_pred eEEECCCCCEEEEEEeCCC---Ce---EEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEE
Q 004368 195 CFQVSPDNKLVAYAEDTKG---DE---IYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G---~e---~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~ 266 (758)
.+.|.+.|++|.+...+.- .. ..+||+.++.......+ .+.+.+-.++|.|++ +|..+..- .+..+-.+
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~---~pa~~s~~ 303 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGY---MPASVSVF 303 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecc---cccceeec
Confidence 4579999999998865432 11 26899999974433322 334556669999999 77666521 12345566
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccceee-EEeecCCEEE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGVDT-AASHRGNHFF 344 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~ 344 (758)
++.+. -+-.+.+. .+- .+.+||.++||++..-......+-++|..+. ...+.. ...+..+ .|+|||+.++
T Consensus 304 ~lr~N---l~~~~Pe~-~rN--T~~fsp~~r~il~agF~nl~gni~i~~~~~r--f~~~~~~~~~n~s~~~wspd~qF~~ 375 (561)
T COG5354 304 DLRGN---LRFYFPEQ-KRN--TIFFSPHERYILFAGFDNLQGNIEIFDPAGR--FKVAGAFNGLNTSYCDWSPDGQFYD 375 (561)
T ss_pred ccccc---eEEecCCc-ccc--cccccCcccEEEEecCCccccceEEeccCCc--eEEEEEeecCCceEeeccCCceEEE
Confidence 66543 11122221 111 2347999999998765554555566677653 344322 2233444 4999998665
Q ss_pred EEEc
Q 004368 345 ITRR 348 (758)
Q Consensus 345 ~~s~ 348 (758)
..+.
T Consensus 376 ~~~t 379 (561)
T COG5354 376 TDTT 379 (561)
T ss_pred ecCC
Confidence 5443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.76 Score=48.74 Aligned_cols=196 Identities=13% Similarity=0.151 Sum_probs=111.1
Q ss_pred EEECCCCCEEEEEEeCCCCeEEEEEEEECCCCcee-----ecc-c---cCcceeEEEecCC-eEEEEEeCCCCCCceEEE
Q 004368 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-----GKP-L---VGVTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (758)
Q Consensus 196 ~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~-----~~~-~---~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~ 265 (758)
+.|++.-.--.. +|++..+|.+||+...... +.. + ..++..++|.+-. .+|-...++ ..|.+
T Consensus 183 lsWn~~~~g~Ll----s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd----~~L~i 254 (422)
T KOG0264|consen 183 LSWNRQQEGTLL----SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD----GKLMI 254 (422)
T ss_pred cccccccceeEe----eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC----CeEEE
Confidence 567765432222 2344567899998754331 111 1 2235668999877 444333332 25888
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeecccccee-eEEeecCCEE
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVD-TAASHRGNHF 343 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~-~~~s~dg~~l 343 (758)
+++.++..+........... ...++|.|-+.+|+.+.+.. ..|.++|+..-. .+..+....+.+. ..|||+.+.+
T Consensus 255 wD~R~~~~~~~~~~~ah~~~-vn~~~fnp~~~~ilAT~S~D--~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 255 WDTRSNTSKPSHSVKAHSAE-VNCVAFNPFNEFILATGSAD--KTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred EEcCCCCCCCcccccccCCc-eeEEEeCCCCCceEEeccCC--CcEEEeechhcccCceeccCCCcceEEEEeCCCCCce
Confidence 88876422222222222222 33678899888887765543 346777887654 3444444444443 3499999988
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCcc-----------eeeecCC-CCceeeeEEEeCC--EEEEEEEeCCeeEEEEEEcC
Q 004368 344 FITRRSDELFNSELLACPVDNTSET-----------TVLIPHR-ESVKLQDIQLFID--HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~~-----------~~l~~~~-~~~~~~~~~~~~~--~l~~~~~~~g~~~l~v~~l~ 408 (758)
+..+..+ .+|.+.|+..-+.. ..++.+. ....+.+|+|... +++....+++. +.||.+.
T Consensus 332 LASSg~D----~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~--LqIW~~s 404 (422)
T KOG0264|consen 332 LASSGTD----RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI--LQIWQMA 404 (422)
T ss_pred eEecccC----CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCce--EEEeecc
Confidence 8777654 57777777532211 1233333 3345678887764 67777777754 5566665
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.067 Score=59.74 Aligned_cols=131 Identities=18% Similarity=0.166 Sum_probs=86.8
Q ss_pred EEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCCh-HHHHHHHcCcEEEEEecCCCCCCc----hhHHh--ccccc
Q 004368 498 QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS-SRLSLLDRGFIFAIAQIRGGGELG----RQWYE--NGKFL 570 (758)
Q Consensus 498 ~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~G~~v~~~~~RG~g~~G----~~~~~--~~~~~ 570 (758)
.|..-+..|.+. +.-.+..+-||+.......... ....-+.+||+++.-|- |+.+.. ..|.. .....
T Consensus 16 ~i~fev~LP~~W-----NgR~~~~GgGG~~G~i~~~~~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~d 89 (474)
T PF07519_consen 16 NIRFEVWLPDNW-----NGRFLQVGGGGFAGGINYADGKASMATALARGYATASTDS-GHQGSAGSDDASFGNNPEALLD 89 (474)
T ss_pred eEEEEEECChhh-----ccCeEEECCCeeeCcccccccccccchhhhcCeEEEEecC-CCCCCcccccccccCCHHHHHH
Confidence 566566667654 2345555666665544332211 13455778999999994 443332 12220 01123
Q ss_pred CCcChHhHHHHHHHHHHHcCC-CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh
Q 004368 571 KKKNTFTDFIACAEYLIKNCY-CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT 634 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~~~-~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~ 634 (758)
.....+.+...+.+.|++..| ..|++-...|+|-||--.+.++.++|+.|.++|+.+|..++..
T Consensus 90 fa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~~ 154 (474)
T PF07519_consen 90 FAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWTH 154 (474)
T ss_pred HHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHHH
Confidence 334556666777788887744 4679999999999999999999999999999999999887543
|
It also includes several bacterial homologues of unknown function. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=95.50 E-value=9.7 Score=47.36 Aligned_cols=154 Identities=12% Similarity=0.130 Sum_probs=84.4
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc---c------------CcceeEEEecCCeEEEEEeCCCC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---V------------GVTASVEWAGNEALVYITMDEIL 258 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~---~------------~~~~~~~wspDg~l~y~~~~~~~ 258 (758)
+.+.+++++..| |..|... .+|+++|+.+........ . +...++++.+++..+|++...
T Consensus 571 ~gvavd~~~g~l-yVaDs~n---~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~-- 644 (1057)
T PLN02919 571 GKLAIDLLNNRL-FISDSNH---NRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE-- 644 (1057)
T ss_pred ceEEEECCCCeE-EEEECCC---CeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC--
Confidence 467888876654 4555443 578889987543322111 0 012457888888555665432
Q ss_pred CCceEEEEEcCCCCCCcEEEeee----------cC------CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCce
Q 004368 259 RPDKAWLHKLEADQSNDICLYHE----------KD------DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL 322 (758)
Q Consensus 259 ~~~~v~~~~l~~~~~~~~~v~~~----------~~------~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~ 322 (758)
.+.|..+++.++ .+..+.. .. -..-.++.++|++..|+++.. ....|+++|..++. .
T Consensus 645 -n~~Ir~id~~~~---~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~--~~~~I~v~d~~~g~-v 717 (1057)
T PLN02919 645 -NHALREIDFVNE---TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA--GQHQIWEYNISDGV-T 717 (1057)
T ss_pred -CceEEEEecCCC---EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--CCCeEEEEECCCCe-E
Confidence 234666665443 1211111 00 001125788997777776543 34568888887654 3
Q ss_pred EEeeccc-----cc-----------eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 323 RVLTPRV-----VG-----------VDTAASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 323 ~~l~~~~-----~~-----------~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
..+.... .+ ....++++|++||+.... +.+|.++|+++
T Consensus 718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~----n~~Irv~D~~t 771 (1057)
T PLN02919 718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE----SSSIRALDLKT 771 (1057)
T ss_pred EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC----CCeEEEEECCC
Confidence 2221110 00 112388999988876443 36788888765
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.17 Score=53.93 Aligned_cols=150 Identities=12% Similarity=0.139 Sum_probs=87.3
Q ss_pred EEeeEEECC-CCCEEEEEEeCCCCeEEEEEEEECCC-CceeeccccC---cceeEEEecCC-eEEEEEeCCCCCCceEEE
Q 004368 192 SVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (758)
Q Consensus 192 ~i~~~~~SP-DG~~lAy~~~~~G~e~~~l~v~dl~~-g~~~~~~~~~---~~~~~~wspDg-~l~y~~~~~~~~~~~v~~ 265 (758)
.++.+.|.| -|.+|+ + ++-...|+||++-+ ++.++ +.-+ .+..+.|+.+| +|+-.+.|.. |.+
T Consensus 216 gvsai~~fp~~~hLlL-S----~gmD~~vklW~vy~~~~~lr-tf~gH~k~Vrd~~~s~~g~~fLS~sfD~~-----lKl 284 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLL-S----GGMDGLVKLWNVYDDRRCLR-TFKGHRKPVRDASFNNCGTSFLSASFDRF-----LKL 284 (503)
T ss_pred ccchhhhccceeeEEE-e----cCCCceEEEEEEecCcceeh-hhhcchhhhhhhhccccCCeeeeeeccee-----eee
Confidence 577889999 666554 2 22346899999876 44444 3322 25568999999 7776666643 667
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccc-ccee-eEEeecCCEE
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-VGVD-TAASHRGNHF 343 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~-~~~s~dg~~l 343 (758)
+++.+++ -..-|...... ..+.+.||+..+++..... .+|..+|..+++ +..-..+. ..+. ..|-++|+++
T Consensus 285 wDtETG~--~~~~f~~~~~~--~cvkf~pd~~n~fl~G~sd--~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 285 WDTETGQ--VLSRFHLDKVP--TCVKFHPDNQNIFLVGGSD--KKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred eccccce--EEEEEecCCCc--eeeecCCCCCcEEEEecCC--CcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceE
Confidence 7888773 23334332222 2467889997777654433 457778888776 21111111 1122 2255778766
Q ss_pred EEEEcCCCCCCcEEEEEeC
Q 004368 344 FITRRSDELFNSELLACPV 362 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~ 362 (758)
+..+++. ..+++-...
T Consensus 358 issSDdk---s~riWe~~~ 373 (503)
T KOG0282|consen 358 ISSSDDK---SVRIWENRI 373 (503)
T ss_pred eeeccCc---cEEEEEcCC
Confidence 5555443 466665443
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.19 Score=47.99 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=63.9
Q ss_pred EEEeeccccccCCCCCEEEEecCCCccCCC-C------------C-CChHHHHHHHcCcEEEEEecCCCCCCchhHHhcc
Q 004368 502 CIVYRKNLVKLDGSDPLLLYGYGSYEICND-P------------A-FNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG 567 (758)
Q Consensus 502 ~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~-~------------~-~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~ 567 (758)
+++..++. ...+..++|++||+.-.... | + --+.+..-.+.||-|++.|.- .-+.|++.-
T Consensus 89 FiF~s~~~--lt~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N----~~~kfye~k 162 (297)
T KOG3967|consen 89 FIFMSEDA--LTNPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPN----RERKFYEKK 162 (297)
T ss_pred eEEEChhH--hcCccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCc----hhhhhhhcc
Confidence 34444443 34556789999995322111 1 0 112334556679999998864 122344321
Q ss_pred cccCC--cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCC
Q 004368 568 KFLKK--KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD 618 (758)
Q Consensus 568 ~~~~~--~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~ 618 (758)
....+ ...++-+..+-.+++. ...++.++++.||+||++++.++.+.|+
T Consensus 163 ~np~kyirt~veh~~yvw~~~v~--pa~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 163 RNPQKYIRTPVEHAKYVWKNIVL--PAKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred cCcchhccchHHHHHHHHHHHhc--ccCcceEEEEEeccCChhHHHHHHhcCC
Confidence 11111 1334444444444443 3567999999999999999999999986
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.17 Score=55.49 Aligned_cols=197 Identities=12% Similarity=0.061 Sum_probs=93.0
Q ss_pred EEEeeEEECC-CCCEEEEEEeCCCCeEEEEEEEECCCCce--eecc------ccC-cceeEEEecCC-e-EEEEEeCCCC
Q 004368 191 YSVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTP--VGKP------LVG-VTASVEWAGNE-A-LVYITMDEIL 258 (758)
Q Consensus 191 ~~i~~~~~SP-DG~~lAy~~~~~G~e~~~l~v~dl~~g~~--~~~~------~~~-~~~~~~wspDg-~-l~y~~~~~~~ 258 (758)
..+..+.|.| |-.+||...+. .+|.+|.+..+.. ...+ +.+ .+.++.|.|=. . ++-.+.+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~dd-----g~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd--- 699 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDD-----GQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD--- 699 (1012)
T ss_pred ceeeecccCCCChHHeeecccC-----ceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc---
Confidence 3566778888 77788876653 3456665544322 1101 111 13335665543 2 2222222
Q ss_pred CCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-----cccee
Q 004368 259 RPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-----VVGVD 333 (758)
Q Consensus 259 ~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-----~~~~~ 333 (758)
..+.++++.+.. +..-+...... .++++|||||+.++-...+. .|.++....++ +++..+ ..+..
T Consensus 700 --~Ti~lWDl~~~~--~~~~l~gHtdq-If~~AWSpdGr~~AtVcKDg---~~rVy~Prs~e--~pv~Eg~gpvgtRgAR 769 (1012)
T KOG1445|consen 700 --STIELWDLANAK--LYSRLVGHTDQ-IFGIAWSPDGRRIATVCKDG---TLRVYEPRSRE--QPVYEGKGPVGTRGAR 769 (1012)
T ss_pred --ceeeeeehhhhh--hhheeccCcCc-eeEEEECCCCcceeeeecCc---eEEEeCCCCCC--CccccCCCCccCccee
Confidence 235666777663 33344443333 34899999999987544332 35555655543 222221 12233
Q ss_pred eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCC---cceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 334 TAASHRGNHFFITRRSDELFNSELLACPVDNTS---ETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 334 ~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
..|.-||+.+++..-+. ....+|..++..... ....++.......+..++.+.+-|+++. .|...+..|.+-
T Consensus 770 i~wacdgr~viv~Gfdk-~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG--KGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 770 ILWACDGRIVIVVGFDK-SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG--KGDRFVNMYEVI 844 (1012)
T ss_pred EEEEecCcEEEEecccc-cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec--CCCceEEEEEec
Confidence 44777777655543322 223344444432211 0111111111222333444444444443 455566677654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=3.2 Score=42.18 Aligned_cols=175 Identities=16% Similarity=0.224 Sum_probs=94.6
Q ss_pred CceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCc--ceeEEEecCCeEEE
Q 004368 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV--TASVEWAGNEALVY 251 (758)
Q Consensus 174 ~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~--~~~~~wspDg~l~y 251 (758)
+-++.+|...+... ..-+++..|+||-+.| |+....+ .+|.-++.++.-....++.+. ...++|.-+|.++.
T Consensus 71 ~y~~~i~akpi~g~--~~nvS~LTynp~~rtL-Fav~n~p---~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi 144 (316)
T COG3204 71 EYRARIDAKPILGE--TANVSSLTYNPDTRTL-FAVTNKP---AAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVI 144 (316)
T ss_pred CceEEEeccccccc--cccccceeeCCCcceE-EEecCCC---ceEEEEecCCceEEEecccccCChhHeEEecCCEEEE
Confidence 34555565433322 2348899999999997 4443333 466666765433333355554 34588988886655
Q ss_pred EEeCCCCCCceEEEEEcCCCCC----Cc-EEEeeec---CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ce
Q 004368 252 ITMDEILRPDKAWLHKLEADQS----ND-ICLYHEK---DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-EL 322 (758)
Q Consensus 252 ~~~~~~~~~~~v~~~~l~~~~~----~~-~~v~~~~---~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~ 322 (758)
+.. |.++++.+.+..+.. +. .+.++.. +..| -+++|+|..+.+++ +..+....||.++..... ..
T Consensus 145 ~dE----R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~Gf-EGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~ 218 (316)
T COG3204 145 VDE----RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGF-EGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSV 218 (316)
T ss_pred Eeh----hcceEEEEEEcCCccEEeccceEEeccccCCCCcCc-eeeecCCCCceEEE-EEccCCcEEEEEecCCccccc
Confidence 432 334677777665421 11 1122221 3333 37899999888776 444556778887743311 11
Q ss_pred EEee-cc-c-----cce-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 323 RVLT-PR-V-----VGV-DTAASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 323 ~~l~-~~-~-----~~~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
.... +. . .++ ...+.+..++|++++.+. ..|..++.++
T Consensus 219 ~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ES----r~l~Evd~~G 264 (316)
T COG3204 219 HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDES----RRLLEVDLSG 264 (316)
T ss_pred ccccCcccccceEeeccccceecCCCCcEEEEecCC----ceEEEEecCC
Confidence 1111 10 0 011 112555567788887765 3566666654
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.13 Score=52.14 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=39.0
Q ss_pred CCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCC
Q 004368 676 NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 676 ~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
.+| -|.+.+.+|..|++.+.+++++..++.|.+++...+. +.+|..
T Consensus 178 ~~p-~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~---~S~HV~ 223 (240)
T PF05705_consen 178 RCP-RLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFE---DSPHVA 223 (240)
T ss_pred CCC-eEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCC---CCchhh
Confidence 566 7888999999999999999999999999888777776 555643
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=2.7 Score=45.20 Aligned_cols=199 Identities=13% Similarity=0.107 Sum_probs=111.6
Q ss_pred eEEEeeEEECCCCC-EEEEEEeCCCCeEEEEEEEECCCCceeec--cccCcceeEEEecCCeEEEEEeCCCCCCceEEEE
Q 004368 190 FYSVGCFQVSPDNK-LVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNEALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 190 ~~~i~~~~~SPDG~-~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~ 266 (758)
+-+++++.+||..- -+|.+.+ ..+.+++..+-.+... .+.....++.|-.||+++......+ .|-..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S------~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG----~V~vf 95 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS------VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESG----HVKVF 95 (487)
T ss_pred cCcceeEecCCCCCCceEEecc------cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcC----cEEEe
Confidence 34688899999443 2344432 3455566656555442 4555666799999998876554332 25555
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceE-Eeeccccceee-EEeecCCEEE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR-VLTPRVVGVDT-AASHRGNHFF 344 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~-~l~~~~~~~~~-~~s~dg~~l~ 344 (758)
++.+. .....+....... -.+.++|++..++.+.++.....+| |+++.. .+ .+....+-+.. .|+|..++++
T Consensus 96 D~k~r--~iLR~~~ah~apv-~~~~f~~~d~t~l~s~sDd~v~k~~--d~s~a~-v~~~l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 96 DMKSR--VILRQLYAHQAPV-HVTKFSPQDNTMLVSGSDDKVVKYW--DLSTAY-VQAELSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred ccccH--HHHHHHhhccCce-eEEEecccCCeEEEecCCCceEEEE--EcCCcE-EEEEecCCcceeEeeccccCCCeEE
Confidence 53331 1111222222111 1345889888877766655555555 555543 22 23333333333 3888888888
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCc
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEP 413 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~ 413 (758)
+....+ +.+-.+|.... ..|+..-+.+..++.+.+.+. .++..+ |-+.+.||++..+|+.
T Consensus 170 vtGsYD----g~vrl~DtR~~--~~~v~elnhg~pVe~vl~lpsgs~iasA---gGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 170 VTGSYD----GKVRLWDTRSL--TSRVVELNHGCPVESVLALPSGSLIASA---GGNSVKVWDLTTGGQL 230 (487)
T ss_pred EecCCC----ceEEEEEeccC--CceeEEecCCCceeeEEEcCCCCEEEEc---CCCeEEEEEecCCcee
Confidence 876655 44555565442 245555555666788776654 554333 3366899999865553
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.061 Score=57.88 Aligned_cols=58 Identities=24% Similarity=0.387 Sum_probs=41.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec--cccCcceeEEEecCCeEEEEEe
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNEALVYITM 254 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~wspDg~l~y~~~ 254 (758)
.+..+.+||||++||-++.+ | .|+|+|.++.+.+.. ..-+..--+.|||||+++.+..
T Consensus 292 ~in~f~FS~DG~~LA~VSqD-G----fLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQD-G----FLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred cccceeEcCCCceEEEEecC-c----eEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC
Confidence 78889999999999987653 3 699999988666542 1122234479999996555543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.14 E-value=2.7 Score=45.25 Aligned_cols=223 Identities=12% Similarity=0.086 Sum_probs=114.2
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
+.+..|=.||+++| .|++...+.|+|.++...++ .+.. ......|+|++ +++-...|+. .+..+++
T Consensus 71 v~s~~fR~DG~Lla-----aGD~sG~V~vfD~k~r~iLR-~~~ah~apv~~~~f~~~d~t~l~s~sDd~----v~k~~d~ 140 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLA-----AGDESGHVKVFDMKSRVILR-QLYAHQAPVHVTKFSPQDNTMLVSGSDDK----VVKYWDL 140 (487)
T ss_pred eeEEEeecCCeEEE-----ccCCcCcEEEeccccHHHHH-HHhhccCceeEEEecccCCeEEEecCCCc----eEEEEEc
Confidence 55678889999998 46666789999976644433 2211 13446899988 6665555442 2445566
Q ss_pred CCCCCCcEEEeee-cCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeE-EeecCCEEEEE
Q 004368 269 EADQSNDICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTA-ASHRGNHFFIT 346 (758)
Q Consensus 269 ~~~~~~~~~v~~~-~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~ 346 (758)
.+.. + +++. ....+.-..+|+|-...|+++.+-.+.-++|-....+.. ...+ ....-++.. +-|.|..++-.
T Consensus 141 s~a~---v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~-v~el-nhg~pVe~vl~lpsgs~iasA 214 (487)
T KOG0310|consen 141 STAY---V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR-VVEL-NHGCPVESVLALPSGSLIASA 214 (487)
T ss_pred CCcE---E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce-eEEe-cCCCceeeEEEcCCCCEEEEc
Confidence 6542 2 3332 233444456799998899887666665555544444321 2222 222223332 44666644422
Q ss_pred EcCCCCCCcEEEEEeCCCCCccee-eecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCccccccCCceee
Q 004368 347 RRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE 424 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~ 424 (758)
+ + ..+-++|+-+++.... ...+ .-.+..+....+ ..++...-++. +.+|+... -.+ -..+.
T Consensus 215 ---g-G--n~vkVWDl~~G~qll~~~~~H--~KtVTcL~l~s~~~rLlS~sLD~~--VKVfd~t~--~Kv-----v~s~~ 277 (487)
T KOG0310|consen 215 ---G-G--NSVKVWDLTTGGQLLTSMFNH--NKTVTCLRLASDSTRLLSGSLDRH--VKVFDTTN--YKV-----VHSWK 277 (487)
T ss_pred ---C-C--CeEEEEEecCCceehhhhhcc--cceEEEEEeecCCceEeecccccc--eEEEEccc--eEE-----EEeee
Confidence 2 2 2355567654222111 1112 223344444332 22334444443 56776441 111 13445
Q ss_pred ccCcccccCCCCcccCCcEEEEEEecC
Q 004368 425 FIDPVYSIDPSESVFSSRILRFHYSSL 451 (758)
Q Consensus 425 ~p~~~~~i~~~~~~~d~~~l~~~~sS~ 451 (758)
+|.+.-+ ...++++.++++..++-
T Consensus 278 ~~~pvLs---iavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 278 YPGPVLS---IAVSPDDQTVVIGMSNG 301 (487)
T ss_pred cccceee---EEecCCCceEEEecccc
Confidence 6655333 33456777776655543
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.059 Score=54.09 Aligned_cols=96 Identities=13% Similarity=0.043 Sum_probs=56.6
Q ss_pred EEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHH-HHHHHHcCCCCCCc
Q 004368 518 LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC-AEYLIKNCYCTKEK 596 (758)
Q Consensus 518 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~~ 596 (758)
.|+++|++.|.. ..|...+..+...++.|..+..+|.+.. .....+++++++. ++.+..... ...
T Consensus 2 ~lf~~p~~gG~~--~~y~~la~~l~~~~~~v~~i~~~~~~~~----------~~~~~si~~la~~y~~~I~~~~~--~gp 67 (229)
T PF00975_consen 2 PLFCFPPAGGSA--SSYRPLARALPDDVIGVYGIEYPGRGDD----------EPPPDSIEELASRYAEAIRARQP--EGP 67 (229)
T ss_dssp EEEEESSTTCSG--GGGHHHHHHHTTTEEEEEEECSTTSCTT----------SHEESSHHHHHHHHHHHHHHHTS--SSS
T ss_pred eEEEEcCCccCH--HHHHHHHHhCCCCeEEEEEEecCCCCCC----------CCCCCCHHHHHHHHHHHhhhhCC--CCC
Confidence 567788866632 3355555555544588888988877521 1222445555553 334433321 238
Q ss_pred EEEEEeChhHHHHHHHHhh---CCCceeEEEEcC
Q 004368 597 LCIEGRSAGGLLIGAVLNM---RPDLFKAAVAAV 627 (758)
Q Consensus 597 i~i~G~S~GG~l~~~~~~~---~p~~f~a~v~~~ 627 (758)
..++|+|+||.+|..++.+ .-.....+++..
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD 101 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILID 101 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence 9999999999998777764 222344555444
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.92 Score=44.53 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=99.4
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCC-eEEEEEeCCCCCCceEEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~ 267 (758)
-+...++|-|.++|. .|+..--|+|+|+...+.-+..+.+ .+..+.|.... .|+-.+.+. .|.+++
T Consensus 102 ivk~~af~~ds~~ll-----tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~-----tVRLWD 171 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLL-----TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK-----TVRLWD 171 (334)
T ss_pred eeeeEEecccchhhh-----ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC-----ceEEEE
Confidence 455667777777665 2333446888888765544433333 24457887655 565443332 255566
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec--ccccee-eEEeecCCEEE
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP--RVVGVD-TAASHRGNHFF 344 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~--~~~~~~-~~~s~dg~~l~ 344 (758)
..++.. +.-++-+.+ .-+...|+||++|.+.-. +.|-.+|..+-. +|.. -.-++. .+.+|+. .+|
T Consensus 172 ~rTgt~--v~sL~~~s~--VtSlEvs~dG~ilTia~g----ssV~Fwdaksf~---~lKs~k~P~nV~SASL~P~k-~~f 239 (334)
T KOG0278|consen 172 HRTGTE--VQSLEFNSP--VTSLEVSQDGRILTIAYG----SSVKFWDAKSFG---LLKSYKMPCNVESASLHPKK-EFF 239 (334)
T ss_pred eccCcE--EEEEecCCC--CcceeeccCCCEEEEecC----ceeEEecccccc---ceeeccCccccccccccCCC-ceE
Confidence 666532 222222222 125678999999987543 335556665432 2221 122233 2377765 566
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCE-EEEEEEeCCeeEEE
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKIT 403 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~l~ 403 (758)
+..+. .+.+++.|-.+. ...-....+....+-.+.+..+. ++...+++|.-+||
T Consensus 240 VaGge----d~~~~kfDy~Tg-eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 240 VAGGE----DFKVYKFDYNTG-EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred EecCc----ceEEEEEeccCC-ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 65444 488999998763 22222222222334455555554 45566788875544
|
|
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.11 Score=56.14 Aligned_cols=116 Identities=20% Similarity=0.131 Sum_probs=77.5
Q ss_pred CCCEEEEecCCCccCCCC-CC-ChHHHHHHH-cCcEEEEEecCCCCCC---chhHHhcccccCCcChHhHHHHHHHHHHH
Q 004368 515 SDPLLLYGYGSYEICNDP-AF-NSSRLSLLD-RGFIFAIAQIRGGGEL---GRQWYENGKFLKKKNTFTDFIACAEYLIK 588 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~-~~-~~~~~~l~~-~G~~v~~~~~RG~g~~---G~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 588 (758)
..|+.|++-|-.-....| .. ...+..|+. .|-.|+....|-=|.. +..-....+...-.+.+.|+...|+.+..
T Consensus 85 ~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~ 164 (514)
T KOG2182|consen 85 GGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNA 164 (514)
T ss_pred CCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHh
Confidence 368888886521122122 11 223455655 5999999999954421 11111112233335678888888888866
Q ss_pred c-CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc
Q 004368 589 N-CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 589 ~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
+ +.-|+.+...+|+||-|.|++++=..+|++..++|+.+..+
T Consensus 165 k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 165 KFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred hcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 6 45666799999999999999999999999988888776643
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.19 Score=49.93 Aligned_cols=166 Identities=16% Similarity=0.074 Sum_probs=91.7
Q ss_pred EEEEecCCCccCCCCC--CChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 518 LLLYGYGSYEICNDPA--FNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 518 ~vl~~hGg~~~~~~~~--~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.||..-||......|. |......|+++||+|+..-|.-+-.. +.. ....+..+..|.+.|.+.+..++.
T Consensus 18 gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH---~~~------A~~~~~~f~~~~~~L~~~~~~~~~ 88 (250)
T PF07082_consen 18 GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDH---QAI------AREVWERFERCLRALQKRGGLDPA 88 (250)
T ss_pred EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcH---HHH------HHHHHHHHHHHHHHHHHhcCCCcc
Confidence 5666666644444443 44555788999999999988643221 111 122345677788888887655444
Q ss_pred --cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhh----hhccCCCCCHHHHHHHHhcCcc
Q 004368 596 --KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAE----WEEWGDPWKEEFYFYMKSYSPV 669 (758)
Q Consensus 596 --~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~----~~e~g~p~~~~~~~~l~~~sp~ 669 (758)
.+.-+|||+|+-+-+.+....+..-++-|+.+ |-| +-.+..+|+...- -.|| .|.-.+....+++.
T Consensus 89 ~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS-FNN---~~a~~aIP~~~~l~~~l~~EF-~PsP~ET~~li~~~--- 160 (250)
T PF07082_consen 89 YLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS-FNN---FPADEAIPLLEQLAPALRLEF-TPSPEETRRLIRES--- 160 (250)
T ss_pred cCCeeeeecccchHHHHHHhhhccCcccceEEEe-cCC---hHHHhhCchHhhhccccccCc-cCCHHHHHHHHHHh---
Confidence 67789999999988777665543223323222 111 1112234432100 0122 23333344344431
Q ss_pred cccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCC
Q 004368 670 DNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKT 708 (758)
Q Consensus 670 ~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~ 708 (758)
..+ +..|++-=.+|.. .|+..+.+.|+....
T Consensus 161 Y~~-----~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~ 191 (250)
T PF07082_consen 161 YQV-----RRNLLIKFNDDDI---DQTDELEQILQQRFP 191 (250)
T ss_pred cCC-----ccceEEEecCCCc---cchHHHHHHHhhhcc
Confidence 122 3356666666643 599999999987643
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.06 Score=37.07 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=21.5
Q ss_pred eeEEEEcCCCcEEEEEecCC--cceEEEE
Q 004368 287 SLGLQASESKKFLFIASESK--ITRFVFY 313 (758)
Q Consensus 287 ~~~~~~S~Dg~~l~~~s~~~--~~~~l~~ 313 (758)
...+.|||||++|+|.+... +..+||+
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred ccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 44688999999999999887 7778874
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.51 Score=49.40 Aligned_cols=196 Identities=10% Similarity=0.032 Sum_probs=102.2
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc-CcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-GVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~-~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
..+..+.||+||.++. +.|.+ ..|.+|+..-..+... .-. ..+..++|||....|.+..+++ .+.+++.
T Consensus 139 s~Vr~m~ws~~g~wmi-SgD~g----G~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg----~ikiWdf 209 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMI-SGDKG----GMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDG----TIKIWDF 209 (464)
T ss_pred ccceeEEEccCCCEEE-EcCCC----ceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCC----eEEEEec
Confidence 3678899999999975 33333 4688888765444322 111 2356689999764444544432 2444454
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITR 347 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s 347 (758)
-....+ .++....-. .-++.|.|... |+++.+. ++ -|-++|..++..+-.+.....-+. ..|.++|.+|+-.+
T Consensus 210 ~~~kee--~vL~GHgwd-VksvdWHP~kg-Liasgsk-Dn-lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s 283 (464)
T KOG0284|consen 210 RMPKEE--RVLRGHGWD-VKSVDWHPTKG-LIASGSK-DN-LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS 283 (464)
T ss_pred cCCchh--heeccCCCC-cceeccCCccc-eeEEccC-Cc-eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc
Confidence 443222 333332211 22578999754 4443332 22 567778887652222323333232 34899997666554
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
.+. -+-++|+..-.+....-.+..++.-..+.+....|+.+.-.+|. +..+.+.
T Consensus 284 kD~-----~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs--vvh~~v~ 337 (464)
T KOG0284|consen 284 KDQ-----SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS--VVHWVVG 337 (464)
T ss_pred CCc-----eEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc--eEEEecc
Confidence 432 34555664311111122244444444456666777666655665 3344443
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.2 Score=50.96 Aligned_cols=191 Identities=10% Similarity=0.055 Sum_probs=103.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.|=++.||.++-+|--+.| -++++|++...+=+.. .-.+.+..++|.|-. .+|....- ..++.++.|-
T Consensus 371 DILDlSWSKn~fLLSSSMD------KTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL----D~KvRiWsI~ 440 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSSSMD------KTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL----DGKVRLWSIS 440 (712)
T ss_pred hheecccccCCeeEecccc------ccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc----ccceEEeecC
Confidence 5567889998877765554 5799999987765553 224457889999976 55444322 1246666775
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC---ceE-Eee-------ccccceeeEEee
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE---ELR-VLT-------PRVVGVDTAASH 338 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~---~~~-~l~-------~~~~~~~~~~s~ 338 (758)
.. .+..+.+- ......+.++|||++.++.+-.+ .+++++..+-+ ... .+. .+.-|+++. .-
T Consensus 441 d~---~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G---~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~-p~ 512 (712)
T KOG0283|consen 441 DK---KVVDWNDL-RDLITAVCYSPDGKGAVIGTFNG---YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFF-PG 512 (712)
T ss_pred cC---eeEeehhh-hhhheeEEeccCCceEEEEEecc---EEEEEEccCCeEEEeeeEeeccCccccCceeeeeEec-CC
Confidence 32 33333332 23445678999999998876432 23333333322 000 000 112233332 11
Q ss_pred cCCEEEEEEcCCCCCCcEEEEEeCCCCCcceee--ecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 339 RGNHFFITRRSDELFNSELLACPVDNTSETTVL--IPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 339 dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+-+.+++.+|+. +|-.+|+.+......+ +..........|+.++++++... ++ ..+++|+++
T Consensus 513 ~~~~vLVTSnDS-----rIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s-eD--s~VYiW~~~ 576 (712)
T KOG0283|consen 513 DPDEVLVTSNDS-----RIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS-ED--SWVYIWKND 576 (712)
T ss_pred CCCeEEEecCCC-----ceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee-cC--ceEEEEeCC
Confidence 223677777754 5656666321111111 11111122345667778887665 33 358899875
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.78 E-value=1 Score=50.89 Aligned_cols=193 Identities=19% Similarity=0.158 Sum_probs=100.7
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECC-----CCce---------eeccccCcceeEEEecCCeEEEEEe-CC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE-----TGTP---------VGKPLVGVTASVEWAGNEALVYITM-DE 256 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~-----~g~~---------~~~~~~~~~~~~~wspDg~l~y~~~-~~ 256 (758)
.+..++.+|||+..+-+. ...++.+||.+ .|.. +.+.+++-...+..||||+++.++. +.
T Consensus 456 aIWsi~~~pD~~g~vT~s-----aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGS-----ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred ceeeeeecCCCCceEEec-----CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC
Confidence 677889999999876332 23456555542 2222 1223455566689999996555544 32
Q ss_pred CCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeE-
Q 004368 257 ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTA- 335 (758)
Q Consensus 257 ~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~- 335 (758)
. .+||. +++-. =-+.+|...=| ..++..|||++.|+-.+.+ .+-.+|=+|..+ -.+-+..+.+.+.+.
T Consensus 531 T---VkVyf--lDtlK-FflsLYGHkLP--V~smDIS~DSklivTgSAD-KnVKiWGLdFGD--CHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 531 T---VKVYF--LDTLK-FFLSLYGHKLP--VLSMDISPDSKLIVTGSAD-KNVKIWGLDFGD--CHKSFFAHDDSVMSVQ 599 (888)
T ss_pred e---EEEEE--eccee-eeeeecccccc--eeEEeccCCcCeEEeccCC-CceEEeccccch--hhhhhhcccCceeEEE
Confidence 2 23443 33331 12234433333 3356689999977654443 445677666643 123344454554433
Q ss_pred EeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 336 ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 336 ~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
|-| ..+++|...++ .++-.+|.+.-...+.+-.+..++.-..+.+.|+++ +...++-. +++|...
T Consensus 600 F~P-~~~~FFt~gKD----~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~v-vs~shD~s--IRlwE~t 664 (888)
T KOG0306|consen 600 FLP-KTHLFFTCGKD----GKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFV-VSSSHDKS--IRLWERT 664 (888)
T ss_pred Ecc-cceeEEEecCc----ceEEeechhhhhhheeeccchheeeeeEEcCCCCeE-EeccCCce--eEeeecc
Confidence 667 56788887776 456666654322222233333232222333444444 34444433 5566544
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.084 Score=57.54 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=65.4
Q ss_pred CCCEEEEecCC-CccCCCCCCChHHHHHHH-cCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHc---
Q 004368 515 SDPLLLYGYGS-YEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN--- 589 (758)
Q Consensus 515 ~~P~vl~~hGg-~~~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--- 589 (758)
+.-+|+++||| |-.....+.......|+. .|.-++.+||.-..|- .-+...+++.-|.-|++++
T Consensus 395 S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPEa-----------PFPRaleEv~fAYcW~inn~al 463 (880)
T KOG4388|consen 395 SRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPEA-----------PFPRALEEVFFAYCWAINNCAL 463 (880)
T ss_pred CceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCCC-----------CCCcHHHHHHHHHHHHhcCHHH
Confidence 45689999986 555667777777777765 6999999999876653 2345568888888898876
Q ss_pred -CCCCCCcEEEEEeChhHHHHHHH
Q 004368 590 -CYCTKEKLCIEGRSAGGLLIGAV 612 (758)
Q Consensus 590 -~~~d~~~i~i~G~S~GG~l~~~~ 612 (758)
|++ .+||++.|.|+||.+..-+
T Consensus 464 lG~T-gEriv~aGDSAGgNL~~~V 486 (880)
T KOG4388|consen 464 LGST-GERIVLAGDSAGGNLCFTV 486 (880)
T ss_pred hCcc-cceEEEeccCCCcceeehh
Confidence 554 6999999999999965433
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.87 Score=46.02 Aligned_cols=193 Identities=12% Similarity=0.206 Sum_probs=98.7
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCC------------Cceee---c--cc-cCc--ceeEEEecCCeEEEEE
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET------------GTPVG---K--PL-VGV--TASVEWAGNEALVYIT 253 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~------------g~~~~---~--~~-~~~--~~~~~wspDg~l~y~~ 253 (758)
...++||||.++| .|+....|.|+|++- |...+ . ++ +.+ +..+.|.|-.+|+...
T Consensus 116 R~aafs~DG~lvA-----TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 116 RAAAFSPDGSLVA-----TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred eeeeeCCCCcEEE-----ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 4568999999998 466567899999861 11110 0 11 111 3457888887766654
Q ss_pred eCCCCCCceEEEEEcCCCCC-CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec---cc
Q 004368 254 MDEILRPDKAWLHKLEADQS-NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP---RV 329 (758)
Q Consensus 254 ~~~~~~~~~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~---~~ 329 (758)
..+ ..|.+.++..... +.-.+|++..+ ..++++.|.|.+|++.... .-+.++|+.+- +.+.+ ..
T Consensus 191 srD----~tvKlFDfsK~saKrA~K~~qd~~~--vrsiSfHPsGefllvgTdH---p~~rlYdv~T~---QcfvsanPd~ 258 (430)
T KOG0640|consen 191 SRD----NTVKLFDFSKTSAKRAFKVFQDTEP--VRSISFHPSGEFLLVGTDH---PTLRLYDVNTY---QCFVSANPDD 258 (430)
T ss_pred cCC----CeEEEEecccHHHHHHHHHhhccce--eeeEeecCCCceEEEecCC---CceeEEeccce---eEeeecCccc
Confidence 432 2366666643321 12224443332 3467899999999885443 22445566553 22221 11
Q ss_pred ---cceee-EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEE
Q 004368 330 ---VGVDT-AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTY 405 (758)
Q Consensus 330 ---~~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~ 405 (758)
+.+.. ..++.|+ +|+....+| .|-.+|--...-.+.+-.......+.+..+..+.-++..+ +-.+.+.+|
T Consensus 259 qht~ai~~V~Ys~t~~-lYvTaSkDG----~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS-G~DS~vkLW 332 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGS-LYVTASKDG----AIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS-GKDSTVKLW 332 (430)
T ss_pred ccccceeEEEecCCcc-EEEEeccCC----cEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec-CCcceeeee
Confidence 11111 2566554 777777663 3444442110000111112223345555566655544433 223456778
Q ss_pred EcCC
Q 004368 406 RLPA 409 (758)
Q Consensus 406 ~l~~ 409 (758)
.+.+
T Consensus 333 Ei~t 336 (430)
T KOG0640|consen 333 EIST 336 (430)
T ss_pred eecC
Confidence 7764
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.67 E-value=1.9 Score=46.97 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=94.7
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC-cceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
..+.++|||+.+. ..+... ....+.++|-++++.......+ ...+++.+|||..+|+..... ..|...+..+..
T Consensus 119 ~~~~~~~~~~~vY-V~n~~~-~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~---~~v~vi~~~~~~ 193 (381)
T COG3391 119 VGLAVDPDGKYVY-VANAGN-GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDD---NTVSVIDTSGNS 193 (381)
T ss_pred ceEEECCCCCEEE-EEeccc-CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCC---CeEEEEeCCCcc
Confidence 4678999999974 444331 2468999999998887642112 235689999996556655222 236665643321
Q ss_pred CCcEEEee----ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEe--eccc-cceeeEEeecCCEEEE
Q 004368 273 SNDICLYH----EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL--TPRV-VGVDTAASHRGNHFFI 345 (758)
Q Consensus 273 ~~~~~v~~----~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l--~~~~-~~~~~~~s~dg~~l~~ 345 (758)
...-. -.....-..+.+++||+++++.........+..+|..++. .... .... ....-..+|+|+.+|+
T Consensus 194 ---v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~-v~~~~~~~~~~~~~~v~~~p~g~~~yv 269 (381)
T COG3391 194 ---VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN-VTATDLPVGSGAPRGVAVDPAGKAAYV 269 (381)
T ss_pred ---eeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce-EEEeccccccCCCCceeECCCCCEEEE
Confidence 11000 0011111356799999998876655545688999998876 2221 1111 1122347899998888
Q ss_pred EEcCCCCCCcEEEEEeCCC
Q 004368 346 TRRSDELFNSELLACPVDN 364 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~ 364 (758)
..... ..+..+|...
T Consensus 270 ~~~~~----~~V~vid~~~ 284 (381)
T COG3391 270 ANSQG----GTVSVIDGAT 284 (381)
T ss_pred EecCC----CeEEEEeCCC
Confidence 76653 4677777654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.60 E-value=5.5 Score=40.66 Aligned_cols=159 Identities=9% Similarity=0.004 Sum_probs=82.6
Q ss_pred ceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeC
Q 004368 238 TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV 316 (758)
Q Consensus 238 ~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~ 316 (758)
..++++|+|| .++++..+ .....|+....+.. ...+.... -...++|+++|...++ ........++. +.
T Consensus 26 ~~s~AvS~dg~~~A~v~~~--~~~~~L~~~~~~~~---~~~~~~g~---~l~~PS~d~~g~~W~v-~~~~~~~~~~~-~~ 95 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEG--DGGRSLYVGPAGGP---VRPVLTGG---SLTRPSWDPDGWVWTV-DDGSGGVRVVR-DS 95 (253)
T ss_pred ccceEECCCCCeEEEEEEc--CCCCEEEEEcCCCc---ceeeccCC---ccccccccCCCCEEEE-EcCCCceEEEE-ec
Confidence 4568999999 78888822 23346887766543 22332221 2346789999654444 33333333333 32
Q ss_pred CCCC-ceEEee-cccc-ce-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCC--CCCcceee-----ecCCCCceeeeEEE
Q 004368 317 SKPE-ELRVLT-PRVV-GV-DTAASHRGNHFFITRRSDELFNSELLACPVD--NTSETTVL-----IPHRESVKLQDIQL 385 (758)
Q Consensus 317 ~~~~-~~~~l~-~~~~-~~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~--~~~~~~~l-----~~~~~~~~~~~~~~ 385 (758)
.++. ....+. .... .+ ...+||||.+++++...++ ..+|++.-+. +.+....+ +.......+.+++|
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~--~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGG--GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCC--CCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence 2333 122221 1111 23 3459999999999987653 3667766542 21211111 11112234567888
Q ss_pred eCC-EEEEEEEeCCeeEEEEEEcC
Q 004368 386 FID-HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 386 ~~~-~l~~~~~~~g~~~l~v~~l~ 408 (758)
..+ .|++.....+......+..+
T Consensus 174 ~~~~~L~V~~~~~~~~~~~~v~~d 197 (253)
T PF10647_consen 174 SDDSTLVVLGRSAGGPVVRLVSVD 197 (253)
T ss_pred cCCCEEEEEeCCCCCceeEEEEcc
Confidence 764 56655555554433334444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.19 Score=55.54 Aligned_cols=133 Identities=12% Similarity=0.127 Sum_probs=75.2
Q ss_pred CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCCh---------------------HHHHHHHcCcEEEEEec
Q 004368 495 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---------------------SRLSLLDRGFIFAIAQI 553 (758)
Q Consensus 495 dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---------------------~~~~l~~~G~~v~~~~~ 553 (758)
.+..+.-|++.... . ....|+|++.-||||.+...+.-. .-..|.+. ..++.+|.
T Consensus 50 ~~~~lf~~f~es~~--~-~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~-anllfiDq 125 (437)
T PLN02209 50 ENVQFFYYFIKSDK--N-PQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKT-ANIIFLDQ 125 (437)
T ss_pred CCeEEEEEEEecCC--C-CCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhc-CcEEEecC
Confidence 35556555444332 2 245799999999999764421100 00133332 46778887
Q ss_pred CCCCCCchhHHhcccccCCcChHhHHHHHHH-HHHHcCCCCCCcEEEEEeChhHHHHH----HHHhhC-----C-CceeE
Q 004368 554 RGGGELGRQWYENGKFLKKKNTFTDFIACAE-YLIKNCYCTKEKLCIEGRSAGGLLIG----AVLNMR-----P-DLFKA 622 (758)
Q Consensus 554 RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~----~~~~~~-----p-~~f~a 622 (758)
+-|.||...-.... ......+.+|+..+++ |+...+......+.|+|.||||.-+- .+..+. + =-+++
T Consensus 126 PvGtGfSy~~~~~~-~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~G 204 (437)
T PLN02209 126 PVGSGFSYSKTPIE-RTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQG 204 (437)
T ss_pred CCCCCccCCCCCCC-ccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeee
Confidence 77666642111101 1111123466666554 44444444557899999999998433 332222 1 14789
Q ss_pred EEEcCCccch
Q 004368 623 AVAAVPFVDV 632 (758)
Q Consensus 623 ~v~~~~~~d~ 632 (758)
+++..|++|.
T Consensus 205 i~igng~td~ 214 (437)
T PLN02209 205 YVLGNPITHI 214 (437)
T ss_pred EEecCcccCh
Confidence 9999999885
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.7 Score=45.22 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=77.7
Q ss_pred EEEEEECCCCceeec--cc-cCcceeEEEecCC---eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEE
Q 004368 218 TVYVIDIETGTPVGK--PL-VGVTASVEWAGNE---ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQ 291 (758)
Q Consensus 218 ~l~v~dl~~g~~~~~--~~-~~~~~~~~wspDg---~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~ 291 (758)
+|||+|+.+-+.+.. +. ++..+-.++||.. .++|-. ..-..+|+++++-+- +.+........ -...++
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~---s~t~GdV~l~d~~nl--~~v~~I~aH~~-~lAala 180 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPG---STTSGDVVLFDTINL--QPVNTINAHKG-PLAALA 180 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecC---CCCCceEEEEEcccc--eeeeEEEecCC-ceeEEE
Confidence 599999999887752 22 2223445676654 566653 233456888887655 23444443332 234678
Q ss_pred EcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce---eeEEeecCCEEEEEEcCCCCCCcEEEEEeC
Q 004368 292 ASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV---DTAASHRGNHFFITRRSDELFNSELLACPV 362 (758)
Q Consensus 292 ~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~---~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~ 362 (758)
+++||..|+-.+...+ -|.++...+++.+..+..+..-+ ...|++|++.|...++.+ .-++++++.
T Consensus 181 fs~~G~llATASeKGT--VIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te---TVHiFKL~~ 249 (391)
T KOG2110|consen 181 FSPDGTLLATASEKGT--VIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE---TVHIFKLEK 249 (391)
T ss_pred ECCCCCEEEEeccCce--EEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC---eEEEEEecc
Confidence 9999998875544333 34445555554233332221111 123899999777777654 467777654
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.58 E-value=2 Score=48.46 Aligned_cols=194 Identities=11% Similarity=0.087 Sum_probs=103.3
Q ss_pred eEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecC-----CeEEEEEeCCCCCCceE
Q 004368 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGN-----EALVYITMDEILRPDKA 263 (758)
Q Consensus 190 ~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspD-----g~l~y~~~~~~~~~~~v 263 (758)
+-.+.+..+++|+.-+.+... .-.+.|||+.+-+.+.. +......++...++ |.++|++..++ .+
T Consensus 192 ~S~vtsL~~~~d~~~~ls~~R-----Dkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g----~~ 262 (775)
T KOG0319|consen 192 KSAVTSLAFSEDSLELLSVGR-----DKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG----VV 262 (775)
T ss_pred hhheeeeeeccCCceEEEecc-----CcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc----eE
Confidence 346788999999988876654 24689999965443321 22222334566665 24667765443 23
Q ss_pred EEEEcCCCCCCcEEEeeec-CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee--eEEeecC
Q 004368 264 WLHKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD--TAASHRG 340 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~-~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~--~~~s~dg 340 (758)
...+..++. ........ .+.+.-......+++.+++++ ..+++++|.++....+.+....+.+. -++.|+.
T Consensus 263 ~~~d~es~~--~~~~~~~~~~~e~~~~~~~~~~~~~l~vta----eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 263 QYWDSESGK--CVYKQRQSDSEEIDHLLAIESMSQLLLVTA----EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred EEEecccch--hhhhhccCCchhhhcceeccccCceEEEEc----cceEEEEEccccEEehhhcCCchhheeeeecCCcc
Confidence 333443331 11110011 111111122345666666543 24578888876542223333222222 2478888
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEE-eCCEEEEEEEeCCeeEEEEEEcC
Q 004368 341 NHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL-FIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+++++.||.. ..++| ++.+. .-.+++...+. +-+++. ..+.++.+...+.. +.+|+++
T Consensus 337 ~~laVATNs~---~lr~y--~~~~~--~c~ii~GH~e~-vlSL~~~~~g~llat~sKD~s--vilWr~~ 395 (775)
T KOG0319|consen 337 SHLAVATNSP---ELRLY--TLPTS--YCQIIPGHTEA-VLSLDVWSSGDLLATGSKDKS--VILWRLN 395 (775)
T ss_pred ceEEEEeCCC---ceEEE--ecCCC--ceEEEeCchhh-eeeeeecccCcEEEEecCCce--EEEEEec
Confidence 9999999975 46777 65542 22366554443 445553 33346666666665 5566664
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.58 E-value=5.9 Score=40.07 Aligned_cols=131 Identities=9% Similarity=0.064 Sum_probs=72.3
Q ss_pred EECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCC--eEEEEEeCCCCCCceEEEEEcCCCCCC
Q 004368 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE--ALVYITMDEILRPDKAWLHKLEADQSN 274 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg--~l~y~~~~~~~~~~~v~~~~l~~~~~~ 274 (758)
..-+||++=+.+.+..|. -.....++...-+++++|-. .++|.+.+.. -.+..+..+.+ +
T Consensus 42 f~~~dgs~g~a~~~eaGk-------------~v~~~~lpaR~Hgi~~~p~~~ravafARrPGt----f~~vfD~~~~~-~ 103 (366)
T COG3490 42 FDARDGSFGAATLSEAGK-------------IVFATALPARGHGIAFHPALPRAVAFARRPGT----FAMVFDPNGAQ-E 103 (366)
T ss_pred eeccCCceeEEEEccCCc-------------eeeeeecccccCCeecCCCCcceEEEEecCCc----eEEEECCCCCc-C
Confidence 445666666665555552 11122333334458888887 5777765432 24455555443 2
Q ss_pred cEEEeeecCCceeeEEEEcCCCcEEEEEecCCcce--EEEEEeCCCCCceEEeec----cccceeeEEeecCCEEEEEE
Q 004368 275 DICLYHEKDDIYSLGLQASESKKFLFIASESKITR--FVFYLDVSKPEELRVLTP----RVVGVDTAASHRGNHFFITR 347 (758)
Q Consensus 275 ~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~--~l~~~d~~~~~~~~~l~~----~~~~~~~~~s~dg~~l~~~s 347 (758)
.+++....+-.|+-.-.+|+||++|+.+-++.+.+ -|=++|...+ .+.+-. ...-.+..|.+||+.+++.-
T Consensus 104 pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 104 PVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeC
Confidence 44444444444554445999999999887775443 3445565532 333321 11223445899999777653
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=2.8 Score=44.82 Aligned_cols=58 Identities=10% Similarity=0.188 Sum_probs=42.1
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCCeEEEEEeCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYITMDE 256 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg~l~y~~~~~ 256 (758)
+....-+|+|.+|+- |.+..+||+|.+.+|+.+.. +.. ...-+.||.||..++++..+
T Consensus 84 v~al~s~n~G~~l~a-----g~i~g~lYlWelssG~LL~v-~~aHYQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 84 VHALASSNLGYFLLA-----GTISGNLYLWELSSGILLNV-LSAHYQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred eeeeecCCCceEEEe-----ecccCcEEEEEeccccHHHH-HHhhccceeEEEEeCCCcEEEecCCC
Confidence 456677999999973 33556899999999998753 222 24567999999777776544
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.085 Score=45.55 Aligned_cols=58 Identities=29% Similarity=0.464 Sum_probs=41.2
Q ss_pred CeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 678 PHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 678 P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
+|+||+.+++|+.+|+..++++.++|.. .+++... +.||+.......=..+. +.+||.
T Consensus 35 ~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~---g~gHg~~~~~s~C~~~~--v~~yl~ 92 (103)
T PF08386_consen 35 PPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVD---GAGHGVYAGGSPCVDKA--VDDYLL 92 (103)
T ss_pred CCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEe---ccCcceecCCChHHHHH--HHHHHH
Confidence 4599999999999999999999998864 3567776 78998653222222222 456765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.46 E-value=7.3 Score=40.65 Aligned_cols=187 Identities=12% Similarity=0.103 Sum_probs=95.4
Q ss_pred CEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeee
Q 004368 203 KLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHE 281 (758)
Q Consensus 203 ~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~ 281 (758)
.+||+..-..+ ..+.+++.+.+...-. ..+...-.+....+ +++..-. .++|+|+|..-.--..+....
T Consensus 57 SLvaiV~~~qp---r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~-RLvV~Le------e~IyIydI~~MklLhTI~t~~ 126 (391)
T KOG2110|consen 57 SLVAIVSIKQP---RKLKVVHFKKKTTICEIFFPTSILAVRMNRK-RLVVCLE------ESIYIYDIKDMKLLHTIETTP 126 (391)
T ss_pred ceeEEEecCCC---ceEEEEEcccCceEEEEecCCceEEEEEccc-eEEEEEc------ccEEEEecccceeehhhhccC
Confidence 45555544333 4677777766554432 22322222333223 3333221 138999987652101111112
Q ss_pred cCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEEcCCCCCCcEEEE-
Q 004368 282 KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRRSDELFNSELLA- 359 (758)
Q Consensus 282 ~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~- 359 (758)
+++.-.+.++.+.++.||++- .+.+..+|+++|+.+-.+...+..+...+.. .|+++|..|+-.+..+ .|.|
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp-~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKG-----TVIRV 200 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYP-GSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKG-----TVIRV 200 (391)
T ss_pred CCccceEeeccCCCCceEEec-CCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCc-----eEEEE
Confidence 334334455666777799885 3345678999998875523334444444443 3999999777665543 2333
Q ss_pred EeCCCCCcceeeecCC---CCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 360 CPVDNTSETTVLIPHR---ESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 360 ~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
..+.++. .+..-+ .-..+-++++..+.-++....+. ..++++.|+.
T Consensus 201 f~v~~G~---kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T-eTVHiFKL~~ 249 (391)
T KOG2110|consen 201 FSVPEGQ---KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT-ETVHIFKLEK 249 (391)
T ss_pred EEcCCcc---EeeeeeCCceeeEEEEEEECCCCCeEEEecCC-CeEEEEEecc
Confidence 3343311 111111 12345555666655555555444 3478888873
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.43 E-value=1.4 Score=46.32 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=80.9
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCC-CChHHHHHHHcCcEEEEEecCC--CCCCch--
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQIRG--GGELGR-- 561 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~~RG--~g~~G~-- 561 (758)
+.+++.. ++.++.+ |+.|... ....-+||++||-......++ ....+..|.++||..+.+..+. ......
T Consensus 63 e~~~L~~-~~~~fla-L~~~~~~---~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~ 137 (310)
T PF12048_consen 63 EVQWLQA-GEERFLA-LWRPANS---AKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRA 137 (310)
T ss_pred hcEEeec-CCEEEEE-EEecccC---CCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccC
Confidence 3444443 5566655 3555543 345779999998544333222 2345568889999999988775 110000
Q ss_pred ----hHHhccc---------------------ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC
Q 004368 562 ----QWYENGK---------------------FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR 616 (758)
Q Consensus 562 ----~~~~~~~---------------------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 616 (758)
.-..++. ......-+.-+.+++.++.+++. .+|+++|+..|++++..++...
T Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~la~~ 214 (310)
T PF12048_consen 138 TEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARYLAEK 214 (310)
T ss_pred CCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHHHhcC
Confidence 0000000 01111233445667777777764 5699999999999999999987
Q ss_pred CC-ceeEEEEcCCc
Q 004368 617 PD-LFKAAVAAVPF 629 (758)
Q Consensus 617 p~-~f~a~v~~~~~ 629 (758)
+. ...+.|+.++.
T Consensus 215 ~~~~~daLV~I~a~ 228 (310)
T PF12048_consen 215 PPPMPDALVLINAY 228 (310)
T ss_pred CCcccCeEEEEeCC
Confidence 64 36777776664
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.31 E-value=2.1 Score=46.09 Aligned_cols=122 Identities=15% Similarity=0.207 Sum_probs=81.7
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec--cccCc-ceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGV-TASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~-~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
++.-..+||--+.+.-+...+| .+.+||+.+..+.-- ..... ..++.|||-...++++. +...+++++++
T Consensus 166 svRll~ys~skr~lL~~asd~G----~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV---G~Dkki~~yD~ 238 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKG----AVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV---GYDKKINIYDI 238 (673)
T ss_pred eEEEeecccccceeeEeeccCC----eEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe---cccceEEEeec
Confidence 4456788999999988887776 688999987655421 11111 45689999993333332 12346999999
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeec
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTP 327 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~ 327 (758)
++....+.+.++.+ ...++++++|.+|++... ..+|+.+|+...+ ++..+..
T Consensus 239 ~s~~s~~~l~y~~P----lstvaf~~~G~~L~aG~s---~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 239 RSQASTDRLTYSHP----LSTVAFSECGTYLCAGNS---KGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred ccccccceeeecCC----cceeeecCCceEEEeecC---CceEEEEecccCCCCceEeee
Confidence 98766677776543 236789999999877433 2478999997755 4444433
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.31 E-value=1.6 Score=45.84 Aligned_cols=152 Identities=11% Similarity=0.086 Sum_probs=75.5
Q ss_pred EEEeeEEECCCCCEEEEEEe-----CCC-CeEEEEEEEECCCCceeeccccC--cceeEEEecCCeEEEEEeCCCCCCce
Q 004368 191 YSVGCFQVSPDNKLVAYAED-----TKG-DEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNEALVYITMDEILRPDK 262 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~-----~~G-~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~wspDg~l~y~~~~~~~~~~~ 262 (758)
.+.....+.|||++.+=... ... .+.-.||.+|..++.... .... +..+++|||||+.+|...-. ..+
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l-~~~~~~~~NGla~SpDg~tly~aDT~---~~~ 186 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL-LDDDLTIPNGLAFSPDGKTLYVADTP---ANR 186 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe-ecCcEEecCceEECCCCCEEEEEeCC---CCe
Confidence 44556788899887543332 111 122368888875444333 2221 35679999999544554322 235
Q ss_pred EEEEEcCC--CC-CC-c-EEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEe-eccc-cceeeE
Q 004368 263 AWLHKLEA--DQ-SN-D-ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL-TPRV-VGVDTA 335 (758)
Q Consensus 263 v~~~~l~~--~~-~~-~-~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l-~~~~-~~~~~~ 335 (758)
+++..+.. +. .. . ...+.. .+..--+.....||.. .+ +...+...|-+++.++.. ...+ .+.. ...-.+
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~l-w~-~a~~~g~~v~~~~pdG~l-~~~i~lP~~~~t~~~F 262 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNL-WV-AAVWGGGRVVRFNPDGKL-LGEIKLPVKRPTNPAF 262 (307)
T ss_pred EEEEecCcccCccCCcceEEEccC-CCCCCCceEEeCCCCE-EE-ecccCCceEEEECCCCcE-EEEEECCCCCCccceE
Confidence 77766642 11 11 1 112221 1111113345556653 22 333334567777777332 2222 2211 111223
Q ss_pred EeecCCEEEEEEcCC
Q 004368 336 ASHRGNHFFITRRSD 350 (758)
Q Consensus 336 ~s~dg~~l~~~s~~~ 350 (758)
-.++.+.||+.++..
T Consensus 263 gG~~~~~L~iTs~~~ 277 (307)
T COG3386 263 GGPDLNTLYITSARS 277 (307)
T ss_pred eCCCcCEEEEEecCC
Confidence 567788999988876
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.1 Score=52.04 Aligned_cols=74 Identities=19% Similarity=0.172 Sum_probs=46.7
Q ss_pred ecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCC----ceeEEEEc
Q 004368 552 QIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAA 626 (758)
Q Consensus 552 ~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~ 626 (758)
=+||.......|.+........ .......|++|+.+.---.++.|.+.|||-||.+|..++...++ ++..++..
T Consensus 42 aFRGTd~t~~~W~ed~~~~~~~-~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~f 119 (224)
T PF11187_consen 42 AFRGTDDTLVDWKEDFNMSFQD-ETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSF 119 (224)
T ss_pred EEECCCCchhhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEe
Confidence 3577766667787665443321 22334566777654422234579999999999999988887543 45555543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.23 E-value=4.2 Score=42.49 Aligned_cols=190 Identities=17% Similarity=0.159 Sum_probs=107.9
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCce-----------------------eec-cccC---cceeEEE
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-----------------------VGK-PLVG---VTASVEW 243 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~-----------------------~~~-~~~~---~~~~~~w 243 (758)
..+..+...+||.+++ .|+....|.||+.++.+. .+. ++.+ ..+++.|
T Consensus 194 ~~V~sVsv~~sgtr~~-----SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFC-----SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred cceeEEEecCCCCeEE-----eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 4677888999999987 355567888888322111 011 2232 3677999
Q ss_pred ecCCeEEEEE-eCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC--
Q 004368 244 AGNEALVYIT-MDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-- 320 (758)
Q Consensus 244 spDg~l~y~~-~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-- 320 (758)
++. ..+|.. .| +.+..+++.+++..+. +.. ..-+..++.+|..+.|+-.+. ...+.+.|..++.
T Consensus 269 ~d~-~v~yS~SwD-----HTIk~WDletg~~~~~-~~~---~ksl~~i~~~~~~~Ll~~gss---dr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 269 SDA-TVIYSVSWD-----HTIKVWDLETGGLKST-LTT---NKSLNCISYSPLSKLLASGSS---DRHIRLWDPRTGDGS 335 (423)
T ss_pred cCC-CceEeeccc-----ceEEEEEeecccceee-eec---CcceeEeecccccceeeecCC---CCceeecCCCCCCCc
Confidence 884 444554 33 3477788887754332 222 223446788887766554322 2456777877655
Q ss_pred -ceEEeeccccceeeE-EeecCCEEEEEEcCCCCCCcEEEEEeCCCCCccee-eecCCCCceeeeEEEeCCEEEEEEEeC
Q 004368 321 -ELRVLTPRVVGVDTA-ASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFIDHLAVYEREG 397 (758)
Q Consensus 321 -~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~~~ 397 (758)
....+..+...+... |+|-..+.++....+ ..+...|+......-- +..+ +..+-.+.|.+..+++....+
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D----~t~klWDvRS~k~plydI~~h--~DKvl~vdW~~~~~IvSGGaD 409 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD----NTVKLWDVRSTKAPLYDIAGH--NDKVLSVDWNEGGLIVSGGAD 409 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecC----CeEEEEEeccCCCcceeeccC--CceEEEEeccCCceEEeccCc
Confidence 223344554444443 888777666655554 3456667655321111 3333 335667888877666655444
Q ss_pred CeeEEEEEE
Q 004368 398 GLQKITTYR 406 (758)
Q Consensus 398 g~~~l~v~~ 406 (758)
. +++++.
T Consensus 410 ~--~l~i~~ 416 (423)
T KOG0313|consen 410 N--KLRIFK 416 (423)
T ss_pred c--eEEEec
Confidence 3 455553
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.17 Score=55.83 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=74.9
Q ss_pred CeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCC-------CC--------------hHHHHHHHcCcEEEEEecC
Q 004368 496 GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-------FN--------------SSRLSLLDRGFIFAIAQIR 554 (758)
Q Consensus 496 G~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~-------~~--------------~~~~~l~~~G~~v~~~~~R 554 (758)
+..+.-|++...+ . ....|+||+.-||||.+...+ +. ..-..|.+. ..++.+|.+
T Consensus 49 ~~~lfy~f~es~~--~-~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~-anllfiDqP 124 (433)
T PLN03016 49 NVQFFYYFIKSEN--N-PKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKM-ANIIFLDQP 124 (433)
T ss_pred CeEEEEEEEecCC--C-cccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhc-CcEEEecCC
Confidence 4556666554332 2 346799999999999764211 10 001233332 567788877
Q ss_pred CCCCCchhHHhcccccC-CcChHhHHHHHHH-HHHHcCCCCCCcEEEEEeChhHHHHHHHHh----hC-----C-CceeE
Q 004368 555 GGGELGRQWYENGKFLK-KKNTFTDFIACAE-YLIKNCYCTKEKLCIEGRSAGGLLIGAVLN----MR-----P-DLFKA 622 (758)
Q Consensus 555 G~g~~G~~~~~~~~~~~-~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~----~~-----p-~~f~a 622 (758)
-|.||... ....... ...+.+|+..++. |+...+......+.|.|.||||..+..++. .+ + =-+++
T Consensus 125 vGtGfSy~--~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkG 202 (433)
T PLN03016 125 VGSGFSYS--KTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQG 202 (433)
T ss_pred CCCCccCC--CCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCccccee
Confidence 66665421 1111111 1122345655543 455554445678999999999984443332 22 1 14789
Q ss_pred EEEcCCccchh
Q 004368 623 AVAAVPFVDVL 633 (758)
Q Consensus 623 ~v~~~~~~d~~ 633 (758)
+++..|++|..
T Consensus 203 i~iGNg~t~~~ 213 (433)
T PLN03016 203 YMLGNPVTYMD 213 (433)
T ss_pred eEecCCCcCch
Confidence 99999988753
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.03 E-value=2.1 Score=44.42 Aligned_cols=117 Identities=16% Similarity=0.206 Sum_probs=68.1
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec--cccCcceeEEEecCC---eEEEEEeCC--------CC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE---ALVYITMDE--------IL 258 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~wspDg---~l~y~~~~~--------~~ 258 (758)
.+..++++-||..+|- ++...+|.+|-+++++-... ..+....-++|.|.. .+...+... ..
T Consensus 237 wvr~v~v~~DGti~As-----~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIAS-----CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred hEEEEEecCCeeEEEe-----cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 4566789999999883 33356899999988843321 222234556787775 232222111 11
Q ss_pred CCceEEEEEcCCCCCCcEEEee-ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 259 RPDKAWLHKLEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 259 ~~~~v~~~~l~~~~~~~~~v~~-~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
+...+.++++.++ ..+++ .....+..+++++|.||||+-.+.+ .+ |.++|+.++.
T Consensus 312 rDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD-kt--lrvwdl~~~~ 367 (406)
T KOG0295|consen 312 RDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCADD-KT--LRVWDLKNLQ 367 (406)
T ss_pred ccceEEEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEecC-Cc--EEEEEeccce
Confidence 2234566777776 23433 2345566789999999998654433 33 4455666543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.45 Score=56.05 Aligned_cols=176 Identities=11% Similarity=0.121 Sum_probs=106.1
Q ss_pred CCceEEeecccccCCC----------CeEEEeeEEECCCCC-EEEEEEeCCCCeEEEEEEEECCCCceeeccc-----cC
Q 004368 173 PPEHLILDENVKAEGR----------GFYSVGCFQVSPDNK-LVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-----VG 236 (758)
Q Consensus 173 ~~~~vllD~n~~~~~~----------~~~~i~~~~~SPDG~-~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~-----~~ 236 (758)
++--+|.|++.+..+. -.-.+.+..|+|.+. .|| .|+...+|+|||+..-+. +-+. ..
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLA-----SGa~~geI~iWDlnn~~t-P~~~~~~~~~~ 162 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLA-----SGADDGEILIWDLNKPET-PFTPGSQAPPS 162 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceee-----ccCCCCcEEEeccCCcCC-CCCCCCCCCcc
Confidence 4567888888762111 123566789999888 777 455567899999976221 1111 12
Q ss_pred cceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCce-eeEEEEcCCCcE-EEEEecCCcceEEEE
Q 004368 237 VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIY-SLGLQASESKKF-LFIASESKITRFVFY 313 (758)
Q Consensus 237 ~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~S~Dg~~-l~~~s~~~~~~~l~~ 313 (758)
-+..++|...- .|+-..... + +..++||... +.++-+.+...+. ...+.|.||+.. |++.+++....-|-+
T Consensus 163 eI~~lsWNrkvqhILAS~s~s-g---~~~iWDlr~~--~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql 236 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSHILASGSPS-G---RAVIWDLRKK--KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL 236 (1049)
T ss_pred cceEeccchhhhHHhhccCCC-C---CceeccccCC--CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence 24457886554 555444332 1 2555677654 3444444433322 346789998865 455555555566667
Q ss_pred EeCCCCC-ceEEeeccccceee-EEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 314 LDVSKPE-ELRVLTPRVVGVDT-AASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 314 ~d~~~~~-~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
.|+.-.. +.+.++.+..|+.. .|.+.+.++++.+..+ .+++..+.++
T Consensus 237 WDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD----~~ii~wN~~t 285 (1049)
T KOG0307|consen 237 WDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD----NRIICWNPNT 285 (1049)
T ss_pred ecccccCCchhhhcccccceeeeccCCCCchhhhcccCC----CCeeEecCCC
Confidence 7765443 45666666666554 4889888888887766 4677777665
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.88 E-value=2.1 Score=42.65 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=72.1
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCC-------Ccee-eccc-cCcceeEEEecCC-eEEEEEeCCCCCC
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-------GTPV-GKPL-VGVTASVEWAGNE-ALVYITMDEILRP 260 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~-------g~~~-~~~~-~~~~~~~~wspDg-~l~y~~~~~~~~~ 260 (758)
..+....+|++|.++++..|..-+....|.++|+.. .++. .++. +.....+.|+|-+ .|++--.+
T Consensus 94 ~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~----- 168 (327)
T KOG0643|consen 94 SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED----- 168 (327)
T ss_pred CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCC-----
Confidence 467788999999999999988766677899999873 3322 2221 2235568999999 56554322
Q ss_pred ceEEEEEcCCCCCCcEEEee-ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 261 DKAWLHKLEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 261 ~~v~~~~l~~~~~~~~~v~~-~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
-.+-.+++.++. +++-. +....-.-++.+|+|..+.+ ++....+.. ++|..+-+
T Consensus 169 G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~T~Fi-T~s~Dttak--l~D~~tl~ 223 (327)
T KOG0643|consen 169 GSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDRTYFI-TGSKDTTAK--LVDVRTLE 223 (327)
T ss_pred CcEEEEEcccCc---eeeechhhhccccccccccCCcceEE-ecccCccce--eeecccee
Confidence 247777777662 22211 11111223577899988754 444444444 44655533
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.33 Score=50.85 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=66.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCc-----ceeEEEecCC-eEEEEEeCCCCCCceEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV-----TASVEWAGNE-ALVYITMDEILRPDKAW 264 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~-----~~~~~wspDg-~l~y~~~~~~~~~~~v~ 264 (758)
.+.++.+|+||..|.-... ..++.++|+.+.+.... ..++. .+.+.||||| .++--+.+. .||
T Consensus 343 ~vtSl~ls~~g~~lLsssR-----Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg-----sv~ 412 (459)
T KOG0288|consen 343 RVTSLDLSMDGLELLSSSR-----DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG-----SVY 412 (459)
T ss_pred ceeeEeeccCCeEEeeecC-----CCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCC-----cEE
Confidence 6788899999998865432 24689999998887653 22221 4668999999 555444333 488
Q ss_pred EEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEE
Q 004368 265 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIA 302 (758)
Q Consensus 265 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~ 302 (758)
++.+.++.-+.++-....++. ..+++|+|.|++|+-.
T Consensus 413 iW~v~tgKlE~~l~~s~s~~a-I~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAA-ITSLSWNPSGSGLLSA 449 (459)
T ss_pred EEEccCceEEEEeccCCCCcc-eEEEEEcCCCchhhcc
Confidence 889888744333332223332 3478899999998643
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.78 E-value=8.8 Score=39.05 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=91.7
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCC-Cceeec---cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGK---PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~-g~~~~~---~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~ 267 (758)
+|+.++|||.-+.++.. |+...++++|++.. |..... ...+-.-.++|+.||..+|+..-+. ++.+++
T Consensus 29 sIS~l~FSP~~~~~~~A----~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk----~~k~wD 100 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAA----GSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDK----QAKLWD 100 (347)
T ss_pred chheeEeccccCceEEe----cccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCC----ceEEEE
Confidence 68889999943333322 44456789999876 444432 2333345589999995445543222 477779
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEE
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITR 347 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s 347 (758)
|.+++.. .+ ...+... -.+.|-+..-+=.+...+.+ .-|-.+|.....++..+ ...+..|..+---. ++++.
T Consensus 101 L~S~Q~~--~v-~~Hd~pv-kt~~wv~~~~~~cl~TGSWD-KTlKfWD~R~~~pv~t~--~LPeRvYa~Dv~~p-m~vVa 172 (347)
T KOG0647|consen 101 LASGQVS--QV-AAHDAPV-KTCHWVPGMNYQCLVTGSWD-KTLKFWDTRSSNPVATL--QLPERVYAADVLYP-MAVVA 172 (347)
T ss_pred ccCCCee--ee-eecccce-eEEEEecCCCcceeEecccc-cceeecccCCCCeeeee--eccceeeehhccCc-eeEEE
Confidence 9888542 22 2222221 13445554443223333322 22455666554312111 11222333222122 23332
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcC
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~ 408 (758)
..+ ..|..++|+++......+...-......++.+.| ..+.+..-+|. +.+..++
T Consensus 173 ta~----r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr--v~iq~id 228 (347)
T KOG0647|consen 173 TAE----RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR--VAIQYID 228 (347)
T ss_pred ecC----CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce--EEEEecC
Confidence 222 3577777765322111222223344556655543 22234444454 3344454
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.69 E-value=13 Score=41.83 Aligned_cols=151 Identities=9% Similarity=0.063 Sum_probs=89.1
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc----CcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV----GVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~----~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
+.++++|.+.+.||.+... | .|-+|++..+-.....+. ....+++|++.+++|-...+. .|..+++
T Consensus 28 I~slA~s~kS~~lAvsRt~-g----~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg-----~i~EwDl 97 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTD-G----NIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSG-----SITEWDL 97 (691)
T ss_pred eEEEEEeccCCceeeeccC-C----cEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCc-----eEEEEec
Confidence 5677889999999877653 3 578888877544432332 236679999666886554433 4777777
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeecccccee--eEEeecCCEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVD--TAASHRGNHFFI 345 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~--~~~s~dg~~l~~ 345 (758)
-+. +....++. ...-..+++..|.+..+.+...+. -++.++...+. ....+..++.+.. ..|.++|.+++.
T Consensus 98 ~~l--k~~~~~d~-~gg~IWsiai~p~~~~l~IgcddG---vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~ 171 (691)
T KOG2048|consen 98 HTL--KQKYNIDS-NGGAIWSIAINPENTILAIGCDDG---VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG 171 (691)
T ss_pred ccC--ceeEEecC-CCcceeEEEeCCccceEEeecCCc---eEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe
Confidence 765 22333322 222233567788888888765543 55666655444 3334444443332 348888877764
Q ss_pred EEcCCCCCCcEEEEEeCCC
Q 004368 346 TRRSDELFNSELLACPVDN 364 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~ 364 (758)
-+. .+.|...|+..
T Consensus 172 Gs~-----Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 172 GSI-----DGVIRIWDVKS 185 (691)
T ss_pred ccc-----CceEEEEEcCC
Confidence 433 24455556544
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=93.65 E-value=2.3 Score=42.79 Aligned_cols=142 Identities=11% Similarity=0.152 Sum_probs=81.9
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCcee-ec-cc----cC--cceeEEEec--CC-eEEEEEeCCCCCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GK-PL----VG--VTASVEWAG--NE-ALVYITMDEILRP 260 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~-~~-~~----~~--~~~~~~wsp--Dg-~l~y~~~~~~~~~ 260 (758)
.+.-+.|-||+++||-..+ ..|.+|+++.+..+ .. .. +. ...+-+||| || .++- ..+.
T Consensus 125 ~i~cvew~Pns~klasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~---- 193 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDS---- 193 (370)
T ss_pred ceeeEEEcCCCCeeEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCC----
Confidence 4677899999999997764 46888998876552 21 11 11 144568998 66 5544 3333
Q ss_pred ceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeeccccceeeE-Eee
Q 004368 261 DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTA-ASH 338 (758)
Q Consensus 261 ~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~-~s~ 338 (758)
.++.+++.+... ..-.+........++.+.|..++++++..+.+.-++ +|....+ +++.+.+..-.+... +.|
T Consensus 194 -tl~~~D~RT~~~--~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvri--WD~R~tk~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 194 -TLQFWDLRTMKK--NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRI--WDTRKTKFPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred -cEEEEEccchhh--hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEE--EeccCCCccccccCCCceEEEEEEecC
Confidence 377777776522 222233333445567789999999888776665444 4665544 344443332222222 444
Q ss_pred cCCEEEEEEcC
Q 004368 339 RGNHFFITRRS 349 (758)
Q Consensus 339 dg~~l~~~s~~ 349 (758)
--+.|++....
T Consensus 269 ~hdqLiLs~~S 279 (370)
T KOG1007|consen 269 EHDQLILSGGS 279 (370)
T ss_pred ccceEEEecCC
Confidence 44555554443
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.42 Score=52.47 Aligned_cols=141 Identities=16% Similarity=0.077 Sum_probs=85.0
Q ss_pred EEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHH---------HHHH------cCcEEEEEec
Q 004368 489 KWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRL---------SLLD------RGFIFAIAQI 553 (758)
Q Consensus 489 ~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~---------~l~~------~G~~v~~~~~ 553 (758)
+.+.-..|..+..|++--... ....|+||+.-||||.+...+...+.- .|.. +=-.++..|.
T Consensus 49 v~v~~~~~~~LFYwf~eS~~~---P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~ 125 (454)
T KOG1282|consen 49 VTVNESEGRQLFYWFFESENN---PETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQ 125 (454)
T ss_pred EECCCCCCceEEEEEEEccCC---CCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEec
Confidence 444444677888876654422 345799999999999765433222111 0110 1134677777
Q ss_pred CCCCCCchhHHhcccccCCcChHhHHHH-HHHHHHHcCCCCCCcEEEEEeChhHHH----HHHHHhhC-----C-CceeE
Q 004368 554 RGGGELGRQWYENGKFLKKKNTFTDFIA-CAEYLIKNCYCTKEKLCIEGRSAGGLL----IGAVLNMR-----P-DLFKA 622 (758)
Q Consensus 554 RG~g~~G~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~~d~~~i~i~G~S~GG~l----~~~~~~~~-----p-~~f~a 622 (758)
+-|.||.-.-........-..+.+|+.. ..+|+.+.+.-..+.+.|.|.||+|.- |..+...+ | =-+++
T Consensus 126 PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG 205 (454)
T KOG1282|consen 126 PVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKG 205 (454)
T ss_pred CCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceE
Confidence 7666554321111111222334456555 457888887777899999999999974 44444433 1 24799
Q ss_pred EEEcCCccch
Q 004368 623 AVAAVPFVDV 632 (758)
Q Consensus 623 ~v~~~~~~d~ 632 (758)
.++..|++|.
T Consensus 206 ~~IGNg~td~ 215 (454)
T KOG1282|consen 206 YAIGNGLTDP 215 (454)
T ss_pred EEecCcccCc
Confidence 9999999884
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.63 E-value=2 Score=50.15 Aligned_cols=100 Identities=16% Similarity=0.077 Sum_probs=61.8
Q ss_pred EEEeeEEECCCCCEEEEEEeC-CC---CeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCCCCCCceEEE
Q 004368 191 YSVGCFQVSPDNKLVAYAEDT-KG---DEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~-~G---~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~ 265 (758)
..++.+.++|+|+.++|..+. +. .....+|+.|..+ ............+.||||| .+++.. ....+..++|+
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~spdg~~~~~~~-~~~~~~~~l~l 89 (620)
T COG1506 13 ARVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VRLLTFGGGVSELRWSPDGSVLAFVS-TDGGRVAQLYL 89 (620)
T ss_pred hcccCcccCCCCceeEEeeccccccccccccceEEEeccc--ccccccCCcccccccCCCCCEEEEEe-ccCCCcceEEE
Confidence 356778999999999999875 21 1235688877655 2222333345668999999 677766 33344667888
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEE
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFI 301 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~ 301 (758)
..++ + ....+... .....|+++|+.+++
T Consensus 90 ~~~~-g---~~~~~~~~----v~~~~~~~~g~~~~~ 117 (620)
T COG1506 90 VDVG-G---LITKTAFG----VSDARWSPDGDRIAF 117 (620)
T ss_pred EecC-C---ceeeeecc----cccceeCCCCCeEEE
Confidence 7766 3 11111111 113458888888777
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.54 E-value=6.1 Score=47.54 Aligned_cols=205 Identities=14% Similarity=0.128 Sum_probs=98.1
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCC-------CC--
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEIL-------RP-- 260 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~-------~~-- 260 (758)
.+-++.+--|+..|.+... .| +|.+.|.++....-. .+++.+..++||||. .++.++..... .+
T Consensus 70 ~i~s~~fl~d~~~i~v~~~-~G----~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITA-LG----DIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred ceEEEEEecccceEEEEec-CC----cEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 4555566666666655443 23 466667777654432 344446668999999 66666543210 00
Q ss_pred -ceE--------EEEEcCCCCCCcEEEeee--------------c------CCceeeEEEEcCCCcEEEEEecC--Ccce
Q 004368 261 -DKA--------WLHKLEADQSNDICLYHE--------------K------DDIYSLGLQASESKKFLFIASES--KITR 309 (758)
Q Consensus 261 -~~v--------~~~~l~~~~~~~~~v~~~--------------~------~~~~~~~~~~S~Dg~~l~~~s~~--~~~~ 309 (758)
..+ -..++|=+ +...-|.+ . -...-.+++|--||++++++... .+..
T Consensus 145 E~~L~~d~~~~sk~v~VGwG--rkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWG--RKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred ccccccccccccccceeccc--ccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 000 00111111 11111110 0 00112348899999999887643 2336
Q ss_pred EEEEEeCCCCCceEEeeccccce--eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCce-eeeEEEe
Q 004368 310 FVFYLDVSKPEELRVLTPRVVGV--DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVK-LQDIQLF 386 (758)
Q Consensus 310 ~l~~~d~~~~~~~~~l~~~~~~~--~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~ 386 (758)
.+-++|.+ +. +.-......+. ...|-|.|..++..-... . ..+|....-++-....-+++...+.. .+++.|.
T Consensus 223 kirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~-s-d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 223 KIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT-S-DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred eEEEeccc-ch-hhcccCcccccccceeecCCCCeEeeeeecC-C-CCcEEEEecCCccccccccCCcccccchheeeec
Confidence 77778876 33 32222222222 234888887766554433 1 23566555443211222333333333 5666665
Q ss_pred CC--EEEEEEEeCCeeEEEEEEc
Q 004368 387 ID--HLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 387 ~~--~l~~~~~~~g~~~l~v~~l 407 (758)
.+ -|++........++.+|..
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred CCCCceeeeecccccceEEEEEe
Confidence 43 3333222222333555543
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.2 Score=51.06 Aligned_cols=235 Identities=15% Similarity=0.206 Sum_probs=116.6
Q ss_pred eCCCCeEEEEEEEeeccccccCCCCCEEEEecCC-Cc--cCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccc
Q 004368 492 SASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGS-YE--ICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGK 568 (758)
Q Consensus 492 ~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg-~~--~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~ 568 (758)
++.-| .|.+.+. + +++++.|+||..|-- .+ ++....|.......+...+.++=+|.+|+.+-......
T Consensus 5 ~t~~G-~v~V~v~---G--~~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~~f~i~Hi~aPGqe~ga~~~p~--- 75 (283)
T PF03096_consen 5 ETPYG-SVHVTVQ---G--DPKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEILQNFCIYHIDAPGQEEGAATLPE--- 75 (283)
T ss_dssp EETTE-EEEEEEE---S--S--TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHHTTSEEEEEE-TTTSTT-----T---
T ss_pred ccCce-EEEEEEE---e--cCCCCCceEEEeccccccchHHHHHHhcchhHHHHhhceEEEEEeCCCCCCCcccccc---
Confidence 34445 4666543 1 233468999999962 11 11223344445555667899999999998763332221
Q ss_pred ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc------cchhhccCC----
Q 004368 569 FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF------VDVLTTMLD---- 638 (758)
Q Consensus 569 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~------~d~~~~~~~---- 638 (758)
.....+++++.+.+..+.+.-.+ +.+..+|--+|+++....+..+|+++-+.|+..|. .+|...-..
T Consensus 76 -~y~yPsmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~L 152 (283)
T PF03096_consen 76 -GYQYPSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWLL 152 (283)
T ss_dssp -T-----HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH----
T ss_pred -cccccCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhcccc
Confidence 22345566766666665554323 67999999999999999999999999999988764 333221000
Q ss_pred CCCCCC--hhhh---hccC------CCCCHHHH-HHHHh-cCc---------------c-cccCCCCCCeEEEeccCCCC
Q 004368 639 PTIPLT--TAEW---EEWG------DPWKEEFY-FYMKS-YSP---------------V-DNVKAQNYPHILVTAGLNDP 689 (758)
Q Consensus 639 ~~~~~~--~~~~---~e~g------~p~~~~~~-~~l~~-~sp---------------~-~~i~~~~~P~~Li~~G~~D~ 689 (758)
....++ ..+| .-|| +++.-..| +.+.+ .+| + ...+...+| +|++.|.+-+
T Consensus 153 ~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~-vLlvvG~~Sp 231 (283)
T PF03096_consen 153 YSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCP-VLLVVGDNSP 231 (283)
T ss_dssp ---CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS--EEEEEETTST
T ss_pred cccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCC-eEEEEecCCc
Confidence 001111 1111 1122 11111111 12221 222 1 222334787 8888899876
Q ss_pred CCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 690 RVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 690 ~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
.+ .++.++..+|-..+ . -+++.. +.|=. ...++-...+..+.+|.+=+|.
T Consensus 232 ~~--~~vv~~ns~Ldp~~--t--tllkv~-dcGgl---V~eEqP~klaea~~lFlQG~G~ 281 (283)
T PF03096_consen 232 HV--DDVVEMNSKLDPTK--T--TLLKVA-DCGGL---VLEEQPGKLAEAFKLFLQGMGY 281 (283)
T ss_dssp TH--HHHHHHHHHS-CCC--E--EEEEET-T-TT----HHHH-HHHHHHHHHHHHHHTTB
T ss_pred ch--hhHHHHHhhcCccc--c--eEEEec-ccCCc---ccccCcHHHHHHHHHHHccCCc
Confidence 44 47788888885432 3 344432 55432 2334444555567777776653
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.42 E-value=3.6 Score=41.75 Aligned_cols=117 Identities=12% Similarity=0.085 Sum_probs=69.7
Q ss_pred eEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-----cccCcceeEEEecCCeEEEEEeCCCCCCceEE
Q 004368 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-----PLVGVTASVEWAGNEALVYITMDEILRPDKAW 264 (758)
Q Consensus 190 ~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-----~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~ 264 (758)
..-+.++++.|.|.+|+...+ ...++++|++|-+-..- ...+.+..+.+|+.|.+|.+...++ . +.
T Consensus 216 ~~~vrsiSfHPsGefllvgTd-----Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG--~--Ik 286 (430)
T KOG0640|consen 216 TEPVRSISFHPSGEFLLVGTD-----HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDG--A--IK 286 (430)
T ss_pred cceeeeEeecCCCceEEEecC-----CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCC--c--EE
Confidence 446788899999999997554 56899999988654321 2233466789999998887776443 2 33
Q ss_pred EEEcCCCCCCcEEEeeec-CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 265 LHKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 265 ~~~l~~~~~~~~~v~~~~-~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
+++=-++ +=+..+.+. +..-.++..++++||||+- +... +-++++.+.++.
T Consensus 287 lwDGVS~--rCv~t~~~AH~gsevcSa~Ftkn~kyiLs-SG~D--S~vkLWEi~t~R 338 (430)
T KOG0640|consen 287 LWDGVSN--RCVRTIGNAHGGSEVCSAVFTKNGKYILS-SGKD--STVKLWEISTGR 338 (430)
T ss_pred eeccccH--HHHHHHHhhcCCceeeeEEEccCCeEEee-cCCc--ceeeeeeecCCc
Confidence 3331111 111122222 2333456779999999763 3322 334455555544
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.22 Score=51.91 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=64.8
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEE----EEEecCCCC-CCchhHHhcccccCCcChHhHHHHHHHHHHHc
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIF----AIAQIRGGG-ELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 589 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v----~~~~~RG~g-~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 589 (758)
..-++|++|| |+.+....-...++..-+.|+-. +..--+|.- +|.. .++.-..+-.++...+.+|.+.
T Consensus 115 ~k~vlvFvHG-fNntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~------DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 115 AKTVLVFVHG-FNNTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNY------DRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred CCeEEEEEcc-cCCchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeeccc------chhhhhhhHHHHHHHHHHHHhC
Confidence 3468999999 55443322222233333444332 222223221 2211 1122234567889999999988
Q ss_pred CCCCCCcEEEEEeChhHHHHHHHHhh--------CCCceeEEEEcCCccc
Q 004368 590 CYCTKEKLCIEGRSAGGLLIGAVLNM--------RPDLFKAAVAAVPFVD 631 (758)
Q Consensus 590 ~~~d~~~i~i~G~S~GG~l~~~~~~~--------~p~~f~a~v~~~~~~d 631 (758)
.-. ++|-|+.||||.++++.++.| -+..++-+|+.+|=.|
T Consensus 188 ~~~--~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD 235 (377)
T COG4782 188 KPV--KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDID 235 (377)
T ss_pred CCC--ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCC
Confidence 753 899999999999998777654 1235778888888555
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.34 E-value=2.3 Score=41.92 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=63.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCC--------------
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDE-------------- 256 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~-------------- 256 (758)
.|....|-...+.|.-+.+ .-++++||..+|+.++. .++....+++.++||.|+-++...
T Consensus 145 ~Ir~v~wc~eD~~iLSSad-----d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK 219 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSAD-----DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK 219 (334)
T ss_pred cceeEEEeccCceEEeecc-----CCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccccccee
Confidence 4555555444444432222 34799999999998763 344445668889998433332211
Q ss_pred ----------------------CCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEE
Q 004368 257 ----------------------ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYL 314 (758)
Q Consensus 257 ----------------------~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~ 314 (758)
+++...+|.++..++ +++-.+......-...+.+||||..-+. .+..++-+||..
T Consensus 220 s~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg--eEi~~~nkgh~gpVhcVrFSPdGE~yAs-GSEDGTirlWQt 296 (334)
T KOG0278|consen 220 SYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG--EEIGSYNKGHFGPVHCVRFSPDGELYAS-GSEDGTIRLWQT 296 (334)
T ss_pred eccCccccccccccCCCceEEecCcceEEEEEeccCC--ceeeecccCCCCceEEEEECCCCceeec-cCCCceEEEEEe
Confidence 012334555555555 3333332222233345778888864322 233455667766
Q ss_pred eCC
Q 004368 315 DVS 317 (758)
Q Consensus 315 d~~ 317 (758)
...
T Consensus 297 ~~~ 299 (334)
T KOG0278|consen 297 TPG 299 (334)
T ss_pred cCC
Confidence 553
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.15 E-value=3.3 Score=46.82 Aligned_cols=155 Identities=12% Similarity=0.108 Sum_probs=81.1
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCce-eecccc---CcceeEEEecCCeEEEEEeCCCCCCceEEEE
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGKPLV---GVTASVEWAGNEALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~-~~~~~~---~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~ 266 (758)
+.-+.++||++|+.|+-.. | ..|-+.|+++++. .+.... .....+.-+||+..+|+.... ..+..+
T Consensus 20 YtGG~~~~s~nG~~L~t~~---~---d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs----~llrv~ 89 (775)
T KOG0319|consen 20 YTGGPVAWSSNGQHLYTAC---G---DRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRS----QLLRVW 89 (775)
T ss_pred ecCCceeECCCCCEEEEec---C---ceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeecc----ceEEEE
Confidence 4445689999999997544 3 3588899999988 332111 225668899999444444332 235555
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeE--EeecCCEEE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTA--ASHRGNHFF 344 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~--~s~dg~~l~ 344 (758)
.+.++. -...+-.....-.+..+++|-| .|+-+....+ .+-++|...+.-...+. +.+|+... |.|+-.+..
T Consensus 90 ~L~tgk--~irswKa~He~Pvi~ma~~~~g-~LlAtggaD~--~v~VWdi~~~~~th~fk-G~gGvVssl~F~~~~~~~l 163 (775)
T KOG0319|consen 90 SLPTGK--LIRSWKAIHEAPVITMAFDPTG-TLLATGGADG--RVKVWDIKNGYCTHSFK-GHGGVVSSLLFHPHWNRWL 163 (775)
T ss_pred Ecccch--HhHhHhhccCCCeEEEEEcCCC-ceEEeccccc--eEEEEEeeCCEEEEEec-CCCceEEEEEeCCccchhh
Confidence 666652 2212211111122345678888 4433333333 34455665543122232 22333322 545444433
Q ss_pred EEEcCCCCCCcEEEEEeCCC
Q 004368 345 ITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~ 364 (758)
+.+. +++..+..+++..
T Consensus 164 L~sg---~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 164 LASG---ATDGTVRVWNLND 180 (775)
T ss_pred eeec---CCCceEEEEEccc
Confidence 3333 3346777788764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.09 E-value=3 Score=43.91 Aligned_cols=106 Identities=13% Similarity=0.099 Sum_probs=61.8
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC--cceeEEEecCC-eEEEEEeCCCCCCc------eE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPD------KA 263 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~wspDg-~l~y~~~~~~~~~~------~v 263 (758)
+....||||+.++++.+- ...++++|+..|.......+. ...+++|.|-+ .+.-.+.++..+.. .+
T Consensus 126 iydL~Ws~d~~~l~s~s~-----dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~ 200 (434)
T KOG1009|consen 126 IYDLAWSPDSNFLVSGSV-----DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVI 200 (434)
T ss_pred hhhhhccCCCceeeeeec-----cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeee
Confidence 456789999999987653 367999999999887642222 25668998887 44444433311111 11
Q ss_pred EEEE-------cCCC-CCCcEEEeee-cCCceeeEEEEcCCCcEEEEEe
Q 004368 264 WLHK-------LEAD-QSNDICLYHE-KDDIYSLGLQASESKKFLFIAS 303 (758)
Q Consensus 264 ~~~~-------l~~~-~~~~~~v~~~-~~~~~~~~~~~S~Dg~~l~~~s 303 (758)
+++. .+.. .+.-..+|.+ .-+.|+...+|||||..++.-+
T Consensus 201 ~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 201 KRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 1111 1111 1112223332 2345676789999999877544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.02 E-value=10 Score=37.64 Aligned_cols=164 Identities=15% Similarity=0.176 Sum_probs=84.1
Q ss_pred eeEEEec--CCeEEEEEeC--CCCCCceEEEEEcCCCCCC-cEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEE
Q 004368 239 ASVEWAG--NEALVYITMD--EILRPDKAWLHKLEADQSN-DICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFY 313 (758)
Q Consensus 239 ~~~~wsp--Dg~l~y~~~~--~~~~~~~v~~~~l~~~~~~-~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~ 313 (758)
.++.||| +++|+..+.. .-...-+++++++..++.- ...-|+-.|. ..++.||+.-.-+++.....++-+||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~--LfdV~Wse~~e~~~~~a~GDGSLrl~- 88 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDG--LFDVAWSENHENQVIAASGDGSLRLF- 88 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccc--eeEeeecCCCcceEEEEecCceEEEe-
Confidence 3478888 4565544321 1223446899888633221 1112333333 34789999988888877766666665
Q ss_pred EeCCCCC-ceEEeeccccceee-EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEE
Q 004368 314 LDVSKPE-ELRVLTPRVVGVDT-AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLA 391 (758)
Q Consensus 314 ~d~~~~~-~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 391 (758)
|+.-+. +++.+......+.. .|..-.+..++.+.-+ ..-+|+..+... .......+..-+.-..+++.-..++
T Consensus 89 -d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD--~TiKLW~~~r~~--Sv~Tf~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 89 -DLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD--GTIKLWDPNRPN--SVQTFNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred -ccCCCCcchhHHHhhhhheEEeccccccceeEEeeccC--CceEeecCCCCc--ceEeecCCccEEEEEecCCCCCCeE
Confidence 443332 34444444333332 2555555555555433 246777655432 1121222221111122344444566
Q ss_pred EEEEeCCeeEEEEEEcCCCCC
Q 004368 392 VYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 392 ~~~~~~g~~~l~v~~l~~~g~ 412 (758)
...+.++. +.+++++..|+
T Consensus 164 as~Sgd~~--l~lwdvr~~gk 182 (311)
T KOG0277|consen 164 ASASGDGT--LRLWDVRSPGK 182 (311)
T ss_pred EEccCCce--EEEEEecCCCc
Confidence 66666665 66777776565
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.42 Score=54.41 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=43.1
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYIT 253 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~ 253 (758)
.+.++.+|||||||+-..- ...|++||+.+|....- .++....++.+||.|.++.+.
T Consensus 578 ritd~~FS~DgrWlisasm-----D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 578 RITDMTFSPDGRWLISASM-----DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred ceeeeEeCCCCcEEEEeec-----CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEE
Confidence 6889999999999986654 25799999999988753 344445569999999443343
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.75 E-value=2.9 Score=46.69 Aligned_cols=54 Identities=22% Similarity=0.288 Sum_probs=41.4
Q ss_pred eEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCCeEE
Q 004368 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALV 250 (758)
Q Consensus 190 ~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg~l~ 250 (758)
+..+.++.+-|||..|....+ ..++|+|+..|..++ ++.+ ....++||.||+.|
T Consensus 12 ~hci~d~afkPDGsqL~lAAg------~rlliyD~ndG~llq-tLKgHKDtVycVAys~dGkrF 68 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILAAG------SRLLVYDTSDGTLLQ-PLKGHKDTVYCVAYAKDGKRF 68 (1081)
T ss_pred ccchheeEECCCCceEEEecC------CEEEEEeCCCccccc-ccccccceEEEEEEccCCcee
Confidence 346888999999999987663 479999999988776 4433 35668999999443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.52 E-value=11 Score=36.57 Aligned_cols=208 Identities=14% Similarity=0.116 Sum_probs=100.4
Q ss_pred CceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCC--Cce----eecc-ccCcceeEEEecC
Q 004368 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET--GTP----VGKP-LVGVTASVEWAGN 246 (758)
Q Consensus 174 ~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~--g~~----~~~~-~~~~~~~~~wspD 246 (758)
+..|+.--|+--. -++.-..|||+|.+||-. +..-.|.++.... ... +... -++.+..++|..|
T Consensus 77 pp~v~~kr~khhk----gsiyc~~ws~~geliatg-----sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~ 147 (350)
T KOG0641|consen 77 PPSVLCKRNKHHK----GSIYCTAWSPCGELIATG-----SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDD 147 (350)
T ss_pred CCeEEeeeccccC----ccEEEEEecCccCeEEec-----CCCceEEEEecccccccccCcceeeeecCCceeeeEEecC
Confidence 4467776665433 356677999999999944 3345677765532 221 1211 1233455666554
Q ss_pred C----eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCce
Q 004368 247 E----ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL 322 (758)
Q Consensus 247 g----~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~ 322 (758)
. .|+... +....++|..+-+.++. ..-+......+..-.+| .|-+ + .+.+.+ ..|..+|+.-....
T Consensus 148 ~~s~~~il~s~---gagdc~iy~tdc~~g~~--~~a~sghtghilalysw--n~~m-~-~sgsqd-ktirfwdlrv~~~v 217 (350)
T KOG0641|consen 148 PESGGAILASA---GAGDCKIYITDCGRGQG--FHALSGHTGHILALYSW--NGAM-F-ASGSQD-KTIRFWDLRVNSCV 217 (350)
T ss_pred CCcCceEEEec---CCCcceEEEeecCCCCc--ceeecCCcccEEEEEEe--cCcE-E-EccCCC-ceEEEEeeecccee
Confidence 3 343332 23356789888888743 22333322222211234 4433 2 233322 22334444322212
Q ss_pred EEeec-c-ccce-----e-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEE
Q 004368 323 RVLTP-R-VVGV-----D-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYE 394 (758)
Q Consensus 323 ~~l~~-~-~~~~-----~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 394 (758)
..+-. . ..+. . ..++|.|+.|+ .... ...-+.+|+.+.-..+...|+..++.-..|++...++ ++.
T Consensus 218 ~~l~~~~~~~glessavaav~vdpsgrll~-sg~~----dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yl-lt~ 291 (350)
T KOG0641|consen 218 NTLDNDFHDGGLESSAVAAVAVDPSGRLLA-SGHA----DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYL-LTC 291 (350)
T ss_pred eeccCcccCCCcccceeEEEEECCCcceee-eccC----CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEE-EEe
Confidence 22211 1 1111 1 12778777433 2222 2456667776633344477777665544455444444 344
Q ss_pred EeCCeeEEEEEEcC
Q 004368 395 REGGLQKITTYRLP 408 (758)
Q Consensus 395 ~~~g~~~l~v~~l~ 408 (758)
+.+- .+.+-++.
T Consensus 292 syd~--~ikltdlq 303 (350)
T KOG0641|consen 292 SYDM--KIKLTDLQ 303 (350)
T ss_pred cccc--eEEEeecc
Confidence 4443 35566665
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=92.47 E-value=6 Score=48.26 Aligned_cols=107 Identities=12% Similarity=0.133 Sum_probs=62.8
Q ss_pred eEEECCCCCEEEEEEeCCCC-eEEEEEEEECCCCceee--ccccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGD-EIYTVYVIDIETGTPVG--KPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~-e~~~l~v~dl~~g~~~~--~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
.++|-.||+++|.+.-.... ....|+|++-+ |+... ....+....++|.|.| -|+-+.. ..++..-++.-+-|-
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfErNGL 291 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFERNGL 291 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEecCCc
Confidence 45899999999988652222 36789999976 55443 2445556779999999 5554443 333322223222222
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEec
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASE 304 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~ 304 (758)
...+-.+.+ .....-...+.|++|+..|++...
T Consensus 292 rhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 292 RHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred EeeeEecCC-CCCCceeeEEEECCCCCEEEEEec
Confidence 211111112 112222356889999999988664
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.15 Score=50.89 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=18.2
Q ss_pred CCcEEEEEeChhHHHHHHHHhh
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNM 615 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~ 615 (758)
..+|.++|||+||.++-.++..
T Consensus 77 ~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred cccceEEEecccHHHHHHHHHH
Confidence 3689999999999988766663
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=92.29 E-value=2 Score=46.39 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=57.5
Q ss_pred EECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCc-ceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCC
Q 004368 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSN 274 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~-~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~ 274 (758)
.+.|-| .||.... ...+.|+|.++...+.+...+. .+-+.+|||| .|+.-+.|. .+|++++..+..
T Consensus 414 ~fhpsg-~va~Gt~-----~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~-----~iyiy~Vs~~g~- 481 (626)
T KOG2106|consen 414 DFHPSG-VVAVGTA-----TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN-----HIYIYRVSANGR- 481 (626)
T ss_pred eccCcc-eEEEeec-----cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCC-----eEEEEEECCCCc-
Confidence 455555 4443332 3467889998866655533333 5668999999 666554433 488888866532
Q ss_pred cEEEeeecCCceeeEEEEcCCCcEEEE
Q 004368 275 DICLYHEKDDIYSLGLQASESKKFLFI 301 (758)
Q Consensus 275 ~~~v~~~~~~~~~~~~~~S~Dg~~l~~ 301 (758)
.......-...+...+.||+|+++|.-
T Consensus 482 ~y~r~~k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred EEEEeeeecCceeEEeeecCCCceEEe
Confidence 233333333355667889999998764
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.25 E-value=12 Score=39.34 Aligned_cols=152 Identities=8% Similarity=0.091 Sum_probs=81.3
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc--ccC---cceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~---~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
++.||| +.+..-..|+=...|+++...+|....+. +.+ .+..+.|||.- .+|++..-+. .+.++++
T Consensus 216 ~LdWSp----~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg----sIrIWDi 287 (440)
T KOG0302|consen 216 GLDWSP----IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG----SIRIWDI 287 (440)
T ss_pred eeeccc----ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc----eEEEEEe
Confidence 568998 23332334666678999999998876542 222 24568999987 6766654221 2555666
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC---ceEEeeccccceee-EEeecCCEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE---ELRVLTPRVVGVDT-AASHRGNHFF 344 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~---~~~~l~~~~~~~~~-~~s~dg~~l~ 344 (758)
..++.+.- ++......-.--++|+.+-.. +.+..+.++-. ++|+..-+ +...+.-...-+.. .|.|....++
T Consensus 288 Rs~~~~~~-~~~kAh~sDVNVISWnr~~~l-LasG~DdGt~~--iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 288 RSGPKKAA-VSTKAHNSDVNVISWNRREPL-LASGGDDGTLS--IWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred cCCCccce-eEeeccCCceeeEEccCCcce-eeecCCCceEE--EEEhhhccCCCcceeEEeccCCeeEEEeccccCceE
Confidence 66644333 333322221213568776653 33333344444 44554322 22222222222332 3888877777
Q ss_pred EEEcCCCCCCcEEEEEeC
Q 004368 345 ITRRSDELFNSELLACPV 362 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~ 362 (758)
.++..+ .+|...|+
T Consensus 364 aasg~D----~QitiWDl 377 (440)
T KOG0302|consen 364 AASGED----NQITIWDL 377 (440)
T ss_pred EeccCC----CcEEEEEe
Confidence 666654 34555555
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.24 E-value=4.7 Score=42.14 Aligned_cols=114 Identities=14% Similarity=0.076 Sum_probs=70.9
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc-cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
-.+.++.|++ .-.+|+..- .-+|.+|||.+|....... ......+..+|...++..... .+ .+.+|+-.
T Consensus 261 ~~Vs~V~w~d--~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gss--dr--~irl~DPR 330 (423)
T KOG0313|consen 261 EPVSSVVWSD--ATVIYSVSW----DHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSS--DR--HIRLWDPR 330 (423)
T ss_pred cceeeEEEcC--CCceEeecc----cceEEEEEeecccceeeeecCcceeEeecccccceeeecCC--CC--ceeecCCC
Confidence 3578889998 556776643 4689999999998765322 223556788888755444332 22 25555555
Q ss_pred CCCCCcEE-EeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEe
Q 004368 270 ADQSNDIC-LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLD 315 (758)
Q Consensus 270 ~~~~~~~~-v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d 315 (758)
++...-+. .|.. ...+..++.|+|-..+++++....++..+|-+.
T Consensus 331 ~~~gs~v~~s~~g-H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 331 TGDGSVVSQSLIG-HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred CCCCceeEEeeec-chhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 54332211 1222 233556788999999999887777766666443
|
|
| >KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.18 E-value=2 Score=42.99 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=54.8
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHc-CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
.|+|| .||-...+....+....+.+-+. |..|.+.+.--+ -...|. .+..+.+.-+.+.+... ---+
T Consensus 24 ~P~ii-~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig~g--~~~s~l--------~pl~~Qv~~~ce~v~~m-~~ls 91 (296)
T KOG2541|consen 24 VPVIV-WHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIGDG--IKDSSL--------MPLWEQVDVACEKVKQM-PELS 91 (296)
T ss_pred CCEEE-EeccCcccccchHHHHHHHHHhCCCCeeEEEEecCC--cchhhh--------ccHHHHHHHHHHHHhcc-hhcc
Confidence 56555 59865555544444444555554 888888886322 112222 12234444455555533 3346
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCC
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPD 618 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~ 618 (758)
+-.-++|.|.||+++=+++...++
T Consensus 92 qGynivg~SQGglv~Raliq~cd~ 115 (296)
T KOG2541|consen 92 QGYNIVGYSQGGLVARALIQFCDN 115 (296)
T ss_pred CceEEEEEccccHHHHHHHHhCCC
Confidence 789999999999998888877654
|
|
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.097 Score=56.13 Aligned_cols=37 Identities=24% Similarity=0.184 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHH
Q 004368 577 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVL 613 (758)
Q Consensus 577 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~ 613 (758)
.-+.+++++|..+|+-++++|.+.|.|+||+-+..-+
T Consensus 138 ~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 138 RILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 4578899999999999999999999999999765443
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.49 Score=48.02 Aligned_cols=85 Identities=18% Similarity=0.056 Sum_probs=51.9
Q ss_pred CEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCc
Q 004368 517 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 596 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 596 (758)
|.|+++|++.|.. +.|.+....|... ..|+....+|-+... ....+++|..+..-..+.+.. -...
T Consensus 1 ~pLF~fhp~~G~~--~~~~~L~~~l~~~-~~v~~l~a~g~~~~~----------~~~~~l~~~a~~yv~~Ir~~Q-P~GP 66 (257)
T COG3319 1 PPLFCFHPAGGSV--LAYAPLAAALGPL-LPVYGLQAPGYGAGE----------QPFASLDDMAAAYVAAIRRVQ-PEGP 66 (257)
T ss_pred CCEEEEcCCCCcH--HHHHHHHHHhccC-ceeeccccCcccccc----------cccCCHHHHHHHHHHHHHHhC-CCCC
Confidence 5678889865532 2344444455444 778888888765322 223445665554322222211 2358
Q ss_pred EEEEEeChhHHHHHHHHhh
Q 004368 597 LCIEGRSAGGLLIGAVLNM 615 (758)
Q Consensus 597 i~i~G~S~GG~l~~~~~~~ 615 (758)
..+.|+|+||.++..++.+
T Consensus 67 y~L~G~S~GG~vA~evA~q 85 (257)
T COG3319 67 YVLLGWSLGGAVAFEVAAQ 85 (257)
T ss_pred EEEEeeccccHHHHHHHHH
Confidence 9999999999999887775
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.79 E-value=3.4 Score=43.50 Aligned_cols=104 Identities=22% Similarity=0.282 Sum_probs=62.0
Q ss_pred eEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECC--------C-----Cc-eee-ccccC---cceeEEEecCC-eEE
Q 004368 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE--------T-----GT-PVG-KPLVG---VTASVEWAGNE-ALV 250 (758)
Q Consensus 190 ~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~--------~-----g~-~~~-~~~~~---~~~~~~wspDg-~l~ 250 (758)
..++..+.|||+|..||=..| ..++.+|-.. + .+ .+. ..+.+ -....+|+||+ .+.
T Consensus 65 ~~aVN~vRf~p~gelLASg~D-----~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~ 139 (434)
T KOG1009|consen 65 TRAVNVVRFSPDGELLASGGD-----GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV 139 (434)
T ss_pred cceeEEEEEcCCcCeeeecCC-----CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceee
Confidence 467889999999999984333 3445555443 3 11 011 11111 13347999999 565
Q ss_pred EEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCC
Q 004368 251 YITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK 306 (758)
Q Consensus 251 y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~ 306 (758)
..+.+. .++.+++..++ -..++.+ +..+..+++|.|-++|+...+.++
T Consensus 140 s~s~dn-----s~~l~Dv~~G~--l~~~~~d-h~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 140 SGSVDN-----SVRLWDVHAGQ--LLAILDD-HEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred eeeccc-----eEEEEEeccce--eEeeccc-cccccceeecchhhhhhhhhccCc
Confidence 555543 37777888773 2233332 344555788999999887655443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.74 E-value=9.4 Score=43.27 Aligned_cols=107 Identities=13% Similarity=0.216 Sum_probs=56.3
Q ss_pred EEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce-----eeEEeecCCEEEEEEcCCCCCCcEEEEEeCC
Q 004368 289 GLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-----DTAASHRGNHFFITRRSDELFNSELLACPVD 363 (758)
Q Consensus 289 ~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-----~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~ 363 (758)
+....|..++++....+ ..|.+++.+.++ .+...+...+. ....+|.| +|+.+.-. +-.|..+|.-
T Consensus 601 Dm~Vdp~~k~v~t~cQD---rnirif~i~sgK-q~k~FKgs~~~eG~lIKv~lDPSg--iY~atScs---dktl~~~Df~ 671 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQD---RNIRIFDIESGK-QVKSFKGSRDHEGDLIKVILDPSG--IYLATSCS---DKTLCFVDFV 671 (1080)
T ss_pred EeeeCCCcceEEEEecc---cceEEEeccccc-eeeeecccccCCCceEEEEECCCc--cEEEEeec---CCceEEEEec
Confidence 45566777776654433 346777888776 55555433222 12355655 45555433 2347777765
Q ss_pred CCCcceeeecCCCCceeeeEEEeCC--EEEEEEEeCCeeEEEEEEcCC
Q 004368 364 NTSETTVLIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 364 ~~~~~~~l~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~l~v~~l~~ 409 (758)
..+-....+.+.+- +.++-+.+| +|+ ....+|. |.||.++.
T Consensus 672 sgEcvA~m~GHsE~--VTG~kF~nDCkHlI-SvsgDgC--IFvW~lp~ 714 (1080)
T KOG1408|consen 672 SGECVAQMTGHSEA--VTGVKFLNDCKHLI-SVSGDGC--IFVWKLPL 714 (1080)
T ss_pred cchhhhhhcCcchh--eeeeeecccchhhe-eecCCce--EEEEECch
Confidence 43222234445443 445555554 443 4445555 66777663
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.71 E-value=3 Score=43.96 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=73.3
Q ss_pred CCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecC---Ccee
Q 004368 213 GDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKD---DIYS 287 (758)
Q Consensus 213 G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~---~~~~ 287 (758)
|.-.-.|+.||..++..+.. +..+...++.-++|| .+.-.+.++ .+-.+++.+. +-..+|.... ..-+
T Consensus 318 gH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd-----tl~viDlRt~--eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 318 GHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD-----TLKVIDLRTK--EIRQTFSAEGFKCASDW 390 (459)
T ss_pred cccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC-----ceeeeecccc--cEEEEeecccccccccc
Confidence 43345699999887776653 455567779999999 665444433 2566676655 2333443211 1112
Q ss_pred eEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEee--cccc-cee-eEEeecCCEEEEEE
Q 004368 288 LGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT--PRVV-GVD-TAASHRGNHFFITR 347 (758)
Q Consensus 288 ~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~--~~~~-~~~-~~~s~dg~~l~~~s 347 (758)
..+.+||||+|++..+.+ ..||++++.+++ ...+. .... ++. ..|++.|..++-..
T Consensus 391 trvvfSpd~~YvaAGS~d---gsv~iW~v~tgK-lE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSAD---GSVYIWSVFTGK-LEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred ceeEECCCCceeeeccCC---CcEEEEEccCce-EEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 246699999998765433 358888988887 33222 2222 232 34888887665443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.68 E-value=7.4 Score=39.35 Aligned_cols=157 Identities=14% Similarity=0.143 Sum_probs=88.4
Q ss_pred EEeeEEECC-CCCEEEEEEeCCCCeEEEEEEEECCCCce---e-ec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEE
Q 004368 192 SVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTP---V-GK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAW 264 (758)
Q Consensus 192 ~i~~~~~SP-DG~~lAy~~~~~G~e~~~l~v~dl~~g~~---~-~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~ 264 (758)
.+.++.|.- |-++|.-+ +- ..+.-|||+++|.. . ++ .-+.-+..++|+.+| .+|.+...++ .|.
T Consensus 152 PlTSFDWne~dp~~igtS-Si----DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDG----SvR 222 (364)
T KOG0290|consen 152 PLTSFDWNEVDPNLIGTS-SI----DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADG----SVR 222 (364)
T ss_pred cccccccccCCcceeEee-cc----cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCC----cEE
Confidence 455666654 44444332 22 25677889988733 1 22 112224559999988 5544433221 366
Q ss_pred EEEcCCCCCCcEEEeeecC-CceeeEEEEcCC-CcEEEEEecCCcceEEEEEeCCCCC-ceEEeeccccceee-EEeecC
Q 004368 265 LHKLEADQSNDICLYHEKD-DIYSLGLQASES-KKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDT-AASHRG 340 (758)
Q Consensus 265 ~~~l~~~~~~~~~v~~~~~-~~~~~~~~~S~D-g~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~-~~s~dg 340 (758)
+.+|..-+ -..++|+.+. ..-.+.++|.+. -++++- -..+.++|.++|+.-+. +...|..+...+.. .|.|..
T Consensus 223 mFDLR~le-HSTIIYE~p~~~~pLlRLswnkqDpnymAT--f~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 223 MFDLRSLE-HSTIIYEDPSPSTPLLRLSWNKQDPNYMAT--FAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred EEEecccc-cceEEecCCCCCCcceeeccCcCCchHHhh--hhcCCceEEEEEecCCCcceehhhcCcccccceEecCCC
Confidence 66776553 3567887765 233456778774 444432 22355789999988765 44455544443332 388876
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 341 NHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
...+....+ ..+....|+..
T Consensus 300 ~~hictaGD----D~qaliWDl~q 319 (364)
T KOG0290|consen 300 SSHICTAGD----DCQALIWDLQQ 319 (364)
T ss_pred CceeeecCC----cceEEEEeccc
Confidence 655444333 35677788765
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.83 Score=49.51 Aligned_cols=87 Identities=11% Similarity=0.016 Sum_probs=55.3
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc-CcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV-GVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~-~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
+-...|||....|+ .|+|.+...|||--+.....-... -...+++|.|| ++|.+..-.. .+
T Consensus 189 iL~~~W~~~s~lI~-----sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt------~R------ 250 (737)
T KOG1524|consen 189 VLSLSWSTQSNIIA-----SGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNT------AR------ 250 (737)
T ss_pred EEEeecCcccccee-----ecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeeee------ee------
Confidence 34568888888887 578889999999765443332222 23677999999 5544432111 11
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEec
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASE 304 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~ 304 (758)
++.++....+.++||+||..++....
T Consensus 251 -------~~~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 251 -------FSSPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred -------ecCCCccceEEEEEcCCCceeecccc
Confidence 33333344457899999999876543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.66 E-value=2.8 Score=44.12 Aligned_cols=193 Identities=14% Similarity=0.126 Sum_probs=105.8
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceee-ccccCc-ceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGV-TASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~-~~~~~~-~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
-+|..+++||.....+=.++ ..+|.|||..-.+... +.-.+- ..++.|.|.-.++++..++. -|.+++-
T Consensus 181 eaIRdlafSpnDskF~t~Sd-----Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn----lVKlWDp 251 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSD-----DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN----LVKLWDP 251 (464)
T ss_pred hhhheeccCCCCceeEEecC-----CCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc----eeEeecC
Confidence 46888999995555442232 3479999976554432 222232 55689999876766665443 3666666
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITR 347 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s 347 (758)
.++.. +..+. ......+.+.|+++|.||+-.+.+. .+-++|+.+-+.+.........+. ..|.|-...|+...
T Consensus 252 rSg~c--l~tlh-~HKntVl~~~f~~n~N~Llt~skD~---~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 252 RSGSC--LATLH-GHKNTVLAVKFNPNGNWLLTGSKDQ---SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred CCcch--hhhhh-hccceEEEEEEcCCCCeeEEccCCc---eEEEEehhHhHHHHHhhcchhhheeeccccccccceeec
Confidence 66522 21111 2233456788999999987544332 456667764333444443333333 23777766666554
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC-CEEEEEEEeCCeeEEE
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI-DHLAVYEREGGLQKIT 403 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~l~ 403 (758)
..+ +.|+...+.. ......++...+..+-++++.. ++|+.....+...+.+
T Consensus 326 g~D----gsvvh~~v~~-~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 326 GSD----GSVVHWVVGL-EEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred cCC----CceEEEeccc-cccccCCCcccccceeeeeccccceeEeecCCCcceeee
Confidence 443 3344444321 1122245555555566666655 4665555555444433
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.62 E-value=7.1 Score=41.09 Aligned_cols=142 Identities=17% Similarity=0.127 Sum_probs=74.1
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
.++-+.|.|--.-+..+. |. .++|.+||+.||+.+-. .-++...++.|+-||.++.++..+ .+|.+++..+
T Consensus 133 rVg~V~wHPtA~NVLlsa---g~-Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckD----KkvRv~dpr~ 204 (472)
T KOG0303|consen 133 RVGLVQWHPTAPNVLLSA---GS-DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKD----KKVRVIDPRR 204 (472)
T ss_pred eEEEEeecccchhhHhhc---cC-CceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccc----ceeEEEcCCC
Confidence 455666666554443332 22 47899999999997642 334556679999999554554432 2466666554
Q ss_pred CCCCcEEEeeec-C-CceeeEEEEcCCCcEEEEEec-CCcceEEEEEeCCCCCce---EEeecccccee-eEEeecCCEE
Q 004368 271 DQSNDICLYHEK-D-DIYSLGLQASESKKFLFIASE-SKITRFVFYLDVSKPEEL---RVLTPRVVGVD-TAASHRGNHF 343 (758)
Q Consensus 271 ~~~~~~~v~~~~-~-~~~~~~~~~S~Dg~~l~~~s~-~~~~~~l~~~d~~~~~~~---~~l~~~~~~~~-~~~s~dg~~l 343 (758)
+ .++.+.. . ..--..+-|-.+|+ |+-+.- .....++-++|.+.-+.+ ..| ....|+. .++++|.+.+
T Consensus 205 ~----~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-DtSnGvl~PFyD~dt~iv 278 (472)
T KOG0303|consen 205 G----TVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL-DTSNGVLLPFYDPDTSIV 278 (472)
T ss_pred C----cEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEe-ccCCceEEeeecCCCCEE
Confidence 4 2333321 1 00111234667887 333322 223355566665543311 222 1223333 3477776655
Q ss_pred EEEE
Q 004368 344 FITR 347 (758)
Q Consensus 344 ~~~s 347 (758)
|+..
T Consensus 279 Yl~G 282 (472)
T KOG0303|consen 279 YLCG 282 (472)
T ss_pred EEEe
Confidence 5553
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.47 E-value=16 Score=42.18 Aligned_cols=165 Identities=17% Similarity=0.145 Sum_probs=87.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCce----eeccccC-cceeEEEecCCeEEEEEeCCCCCCceEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP----VGKPLVG-VTASVEWAGNEALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~----~~~~~~~-~~~~~~wspDg~l~y~~~~~~~~~~~v~~~ 266 (758)
.+.++.+|+||+.+|+... .+ ..+++-.+..+.. ....+.+ ....+.|.++|.++-+ +......++.+.
T Consensus 364 ~~~s~avS~~g~~~A~v~~-~~---~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g~vWtv--d~~~~~~~vl~v 437 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA-DG---DSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRGDLWVV--DRDPADPRLLWL 437 (599)
T ss_pred CccceEEcCCCceEEEEcC-CC---cEEEEeccCCCCccccccceeeccCcccCCcCcCCCCEEEe--cCCCCCceEEEE
Confidence 4668899999999999843 22 5788877655443 1111222 2566889888854433 221112233322
Q ss_pred EcCCCCCCcEEEee-ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCC---CCC----ceEEeeccccce-eeEEe
Q 004368 267 KLEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS---KPE----ELRVLTPRVVGV-DTAAS 337 (758)
Q Consensus 267 ~l~~~~~~~~~v~~-~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~---~~~----~~~~l~~~~~~~-~~~~s 337 (758)
.-+++. ...+-. .-...-...+..|+||-.+++.....+..+|++--+. ++. .++.+....... ...|.
T Consensus 438 ~~~~G~--~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~ 515 (599)
T PRK13613 438 LQGDGE--PVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWA 515 (599)
T ss_pred EcCCCc--EEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEc
Confidence 212331 211111 1112234468899999999887766555566653322 221 122333322222 23476
Q ss_pred ecCCEEEEEEcCCCCCCcEEEEEeCCCCC
Q 004368 338 HRGNHFFITRRSDELFNSELLACPVDNTS 366 (758)
Q Consensus 338 ~dg~~l~~~s~~~~~~~~~L~~~~~~~~~ 366 (758)
.++. |+++.... ..+..++++.+++..
T Consensus 516 ~~~s-L~Vlg~~~-~~~~~v~~v~vdG~~ 542 (599)
T PRK13613 516 GDSQ-LVVLGREE-GGVQQARYVQVDGST 542 (599)
T ss_pred CCCE-EEEEeccC-CCCcceEEEecCCcC
Confidence 6554 66654333 235678888888643
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.3 Score=49.65 Aligned_cols=113 Identities=13% Similarity=0.126 Sum_probs=62.9
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC--cceeEEEecCC-eEEEEEeCCCCCCceEE--EE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAW--LH 266 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~--~~ 266 (758)
.+..++|||||+|+|-... | ....+.||+|+....+..-.+. ....++|||.+ .+.-+...... --.|| +.
T Consensus 80 ~~t~vAfS~~GryvatGEc--G-~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDM-IVnv~dWr~ 155 (1080)
T KOG1408|consen 80 PLTCVAFSQNGRYVATGEC--G-RTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDM-IVNVNDWRV 155 (1080)
T ss_pred ceeEEEEcCCCcEEEeccc--C-CCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccce-EEEhhhhhh
Confidence 5778899999999985543 2 2467999999987655432222 25668999999 45433322111 00122 22
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCC
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~ 318 (758)
++... .+.-......+++|.||.|.+-..+. .-.+|.++...
T Consensus 156 N~~~a--------snkiss~Vsav~fsEdgSYfvT~gnr--Hvk~wyl~~~~ 197 (1080)
T KOG1408|consen 156 NSSGA--------SNKISSVVSAVAFSEDGSYFVTSGNR--HVKLWYLQIQS 197 (1080)
T ss_pred ccccc--------ccccceeEEEEEEccCCceeeeeeee--eEEEEEeeccc
Confidence 22111 11111122346799999986544332 23456666543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.27 E-value=5.8 Score=40.64 Aligned_cols=158 Identities=12% Similarity=0.109 Sum_probs=83.3
Q ss_pred CeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEEC-CCCceeec--c-------ccCcceeEEEecCC-e-EEEEEeCC
Q 004368 189 GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDI-ETGTPVGK--P-------LVGVTASVEWAGNE-A-LVYITMDE 256 (758)
Q Consensus 189 ~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl-~~g~~~~~--~-------~~~~~~~~~wspDg-~-l~y~~~~~ 256 (758)
++...-+..|||||.+|.-.. ...|+|+|+ ..|..-+. + ..++.+.++++|-. + ++.-+...
T Consensus 157 e~taAhsL~Fs~DGeqlfaGy------krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q 230 (406)
T KOG2919|consen 157 EYTAAHSLQFSPDGEQLFAGY------KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ 230 (406)
T ss_pred hhhhheeEEecCCCCeEeecc------cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccc
Confidence 344556789999999986322 467999998 45543221 1 13456778999866 3 44333321
Q ss_pred CCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeecccc----c
Q 004368 257 ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVV----G 331 (758)
Q Consensus 257 ~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~----~ 331 (758)
...+|..+ .. +...++.+.... ...+.|-+||..|+..+ +...+|-.+|+.... .+..|..... -
T Consensus 231 ---~~giy~~~--~~--~pl~llggh~gG-vThL~~~edGn~lfsGa--Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQR 300 (406)
T KOG2919|consen 231 ---RVGIYNDD--GR--RPLQLLGGHGGG-VTHLQWCEDGNKLFSGA--RKDDKILCWDIRYSRDPVYALERHVGDTNQR 300 (406)
T ss_pred ---eeeeEecC--CC--CceeeecccCCC-eeeEEeccCcCeecccc--cCCCeEEEEeehhccchhhhhhhhccCccce
Confidence 12244322 11 222233222222 33578999999876433 223455666765432 2222221111 1
Q ss_pred eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCc
Q 004368 332 VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSE 367 (758)
Q Consensus 332 ~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~ 367 (758)
+.+..+|+|++|+-- ...+-|-++|+++.+.
T Consensus 301 I~FDld~~~~~LasG-----~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 301 ILFDLDPKGEILASG-----DTDGSVRVWDLKDLGN 331 (406)
T ss_pred EEEecCCCCceeecc-----CCCccEEEEecCCCCC
Confidence 233467777765421 2345677778776443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.4 Score=46.15 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=37.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec--cccCcceeEEEecCC-eEEEEEeC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMD 255 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~wspDg-~l~y~~~~ 255 (758)
.+..-+|||||.-|. ++ +|...|.+|.- +|-.+.. ........++|.|++ .++|...+
T Consensus 106 A~~~gRW~~dGtgLl-t~----GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~ 166 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLL-TA----GEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG 166 (737)
T ss_pred hhhhcccCCCCceee-ee----cCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCC
Confidence 344568999999775 22 23457888875 4544432 222235668999999 89998653
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.7 Score=49.34 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=57.7
Q ss_pred EEEEecCCCccCCCCCCChHHHHHHHcCcE---EEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 518 LLLYGYGSYEICNDPAFNSSRLSLLDRGFI---FAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 518 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~---v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
.++++||. +. ....|......+...|+. +..+.+.+....+.. ....+-+.+-++....... .
T Consensus 61 pivlVhG~-~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~ql~~~V~~~l~~~g--a 126 (336)
T COG1075 61 PIVLVHGL-GG-GYGNFLPLDYRLAILGWLTNGVYAFELSGGDGTYSL----------AVRGEQLFAYVDEVLAKTG--A 126 (336)
T ss_pred eEEEEccC-cC-CcchhhhhhhhhcchHHHhcccccccccccCCCccc----------cccHHHHHHHHHHHHhhcC--C
Confidence 57778996 22 222344444455556777 666776654211111 1111233333333333322 3
Q ss_pred CcEEEEEeChhHHHHHHHHhhCC--CceeEEEEcCC
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRP--DLFKAAVAAVP 628 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p--~~f~a~v~~~~ 628 (758)
.++.++|||+||.++-.++...+ .+++.++...+
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~t 162 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGT 162 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEecc
Confidence 89999999999999998888887 67888776654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.54 E-value=24 Score=36.79 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=39.1
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCCeEEEEEe
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYITM 254 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg~l~y~~~ 254 (758)
.+..+.+-|-..++| .|+...+|.|||+++|+... ++.+ ...+++.|+---.+|...
T Consensus 153 WVr~vavdP~n~wf~-----tgs~DrtikIwDlatg~Lkl-tltGhi~~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFA-----TGSADRTIKIWDLATGQLKL-TLTGHIETVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred eEEEEeeCCCceeEE-----ecCCCceeEEEEcccCeEEE-eecchhheeeeeeecccCceEEEec
Confidence 566778888888876 34446789999999998765 4443 245678887763334443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=90.49 E-value=20 Score=35.69 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=90.1
Q ss_pred CCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEE
Q 004368 199 SPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDIC 277 (758)
Q Consensus 199 SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~ 277 (758)
.+++++|... +.. ..|+.+|.++|+.+-. .+++......-..++.+++...+ ..++..++.++.. .-
T Consensus 33 ~~~~~~v~~~-~~~----~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~-----~~l~~~d~~tG~~--~W 100 (238)
T PF13360_consen 33 VPDGGRVYVA-SGD----GNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSD-----GSLYALDAKTGKV--LW 100 (238)
T ss_dssp EEETTEEEEE-ETT----SEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETT-----SEEEEEETTTSCE--EE
T ss_pred EEeCCEEEEE-cCC----CEEEEEECCCCCEEEEeeccccccceeeecccccccccce-----eeeEecccCCcce--ee
Confidence 4456665444 322 4799999999987632 33332221222334467655522 1688888777632 11
Q ss_pred E-eeec--CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeeccccc---------eeeEEeecCCEEE
Q 004368 278 L-YHEK--DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVG---------VDTAASHRGNHFF 344 (758)
Q Consensus 278 v-~~~~--~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~---------~~~~~s~dg~~l~ 344 (758)
. .... ............++..+++... ...|+.+|+++++ .+..-...... ......-.++.+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (238)
T PF13360_consen 101 SIYLTSSPPAGVRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVY 177 (238)
T ss_dssp EEEE-SSCTCSTB--SEEEEETTEEEEEET---CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEE
T ss_pred eeccccccccccccccCceEecCEEEEEec---cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEE
Confidence 1 1111 1111112223334666666543 4568888988876 22221111110 0112222234565
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+.+... +++.+|+.+. ...|-.+. ......+...++.+++.. +++ .+..+++.+
T Consensus 178 ~~~~~g-----~~~~~d~~tg-~~~w~~~~--~~~~~~~~~~~~~l~~~~-~~~--~l~~~d~~t 231 (238)
T PF13360_consen 178 VSSGDG-----RVVAVDLATG-EKLWSKPI--SGIYSLPSVDGGTLYVTS-SDG--RLYALDLKT 231 (238)
T ss_dssp EECCTS-----SEEEEETTTT-EEEEEECS--S-ECECEECCCTEEEEEE-TTT--EEEEEETTT
T ss_pred EEcCCC-----eEEEEECCCC-CEEEEecC--CCccCCceeeCCEEEEEe-CCC--EEEEEECCC
Confidence 554432 3667788763 33463331 112222556677777666 454 477777763
|
... |
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.19 E-value=24 Score=36.23 Aligned_cols=138 Identities=15% Similarity=0.163 Sum_probs=70.8
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc--cCcceeEEEecCC--eEEEEEeCCCCCCceEEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE--ALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~wspDg--~l~y~~~~~~~~~~~v~~~~ 267 (758)
++..+++ +|.++| .|+..-+|+|+|+........-+ .+......|.++- .-+....+++ ++..++
T Consensus 45 sitavAV--s~~~~a-----SGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG----~i~iw~ 113 (362)
T KOG0294|consen 45 SITALAV--SGPYVA-----SGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG----HIIIWR 113 (362)
T ss_pred ceeEEEe--cceeEe-----ccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC----cEEEEE
Confidence 3444444 467766 35546789999998766554322 2335556777765 2222222222 355555
Q ss_pred cCCCCCCcEEEee-ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-c-eEEeeccccceeeEEeecCCEEE
Q 004368 268 LEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-E-LRVLTPRVVGVDTAASHRGNHFF 344 (758)
Q Consensus 268 l~~~~~~~~~v~~-~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~-~~~l~~~~~~~~~~~s~dg~~l~ 344 (758)
.+.= +++-. .....-..+++..|.||. +++...... +.++||-.+. . ...|. .......|+|.|++++
T Consensus 114 ~~~W----~~~~slK~H~~~Vt~lsiHPS~KL-ALsVg~D~~--lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 114 VGSW----ELLKSLKAHKGQVTDLSIHPSGKL-ALSVGGDQV--LRTWNLVRGRVAFVLNLK--NKATLVSWSPQGDHFV 184 (362)
T ss_pred cCCe----EEeeeecccccccceeEecCCCce-EEEEcCCce--eeeehhhcCccceeeccC--CcceeeEEcCCCCEEE
Confidence 5431 22211 111122345778899874 555554433 4445665554 1 11221 1122344889999888
Q ss_pred EEEcC
Q 004368 345 ITRRS 349 (758)
Q Consensus 345 ~~s~~ 349 (758)
+....
T Consensus 185 v~~~~ 189 (362)
T KOG0294|consen 185 VSGRN 189 (362)
T ss_pred EEecc
Confidence 76543
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=90.16 E-value=1.1 Score=57.65 Aligned_cols=99 Identities=12% Similarity=0.021 Sum_probs=61.0
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.++++||+.+... .|...... +..++.|+.++.+|.+.. .....+++++.+.+...+..-. ...
T Consensus 1068 ~~~l~~lh~~~g~~~--~~~~l~~~-l~~~~~v~~~~~~g~~~~----------~~~~~~l~~la~~~~~~i~~~~-~~~ 1133 (1296)
T PRK10252 1068 GPTLFCFHPASGFAW--QFSVLSRY-LDPQWSIYGIQSPRPDGP----------MQTATSLDEVCEAHLATLLEQQ-PHG 1133 (1296)
T ss_pred CCCeEEecCCCCchH--HHHHHHHh-cCCCCcEEEEECCCCCCC----------CCCCCCHHHHHHHHHHHHHhhC-CCC
Confidence 366888898665432 24333333 345799999999987632 1112345555554333332211 125
Q ss_pred cEEEEEeChhHHHHHHHHhh---CCCceeEEEEcCC
Q 004368 596 KLCIEGRSAGGLLIGAVLNM---RPDLFKAAVAAVP 628 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~---~p~~f~a~v~~~~ 628 (758)
+..++|+|+||.++..++.+ +++....+++..+
T Consensus 1134 p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1134 PYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred CEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 79999999999999888775 5777777765544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.02 E-value=3.9 Score=45.28 Aligned_cols=180 Identities=15% Similarity=0.205 Sum_probs=76.3
Q ss_pred CceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCCeEEEEE
Q 004368 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYIT 253 (758)
Q Consensus 174 ~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg~l~y~~ 253 (758)
++.+.+....+.... .....++.+|+|+.++. . |+..+.|+- ....+....+....++|++.++++...
T Consensus 18 g~~~~l~~k~lg~~~--~~p~~ls~npngr~v~V--~--g~geY~iyt-----~~~~r~k~~G~g~~~vw~~~n~yAv~~ 86 (443)
T PF04053_consen 18 GERLPLSVKELGSCE--IYPQSLSHNPNGRFVLV--C--GDGEYEIYT-----ALAWRNKAFGSGLSFVWSSRNRYAVLE 86 (443)
T ss_dssp TS-B----EEEEE-S--S--SEEEE-TTSSEEEE--E--ETTEEEEEE-----TTTTEEEEEEE-SEEEE-TSSEEEEE-
T ss_pred CceeeEEeccCCCCC--cCCeeEEECCCCCEEEE--E--cCCEEEEEE-----ccCCcccccCceeEEEEecCccEEEEE
Confidence 344444444443322 23567899999999988 2 222577775 111111122334458999977755443
Q ss_pred eCCCCCCceEEE-EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce
Q 004368 254 MDEILRPDKAWL-HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV 332 (758)
Q Consensus 254 ~~~~~~~~~v~~-~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 332 (758)
. ...+.+ .++..... ..+ ..+ +.+.--+. |..|.+.+++ .|.++|.++++..+.+. ...+
T Consensus 87 ~-----~~~I~I~kn~~~~~~--k~i-~~~---~~~~~If~--G~LL~~~~~~----~i~~yDw~~~~~i~~i~--v~~v 147 (443)
T PF04053_consen 87 S-----SSTIKIYKNFKNEVV--KSI-KLP---FSVEKIFG--GNLLGVKSSD----FICFYDWETGKLIRRID--VSAV 147 (443)
T ss_dssp T-----TS-EEEEETTEE-TT--------S---S-EEEEE---SSSEEEEETT----EEEEE-TTT--EEEEES--S-E-
T ss_pred C-----CCeEEEEEcCccccc--eEE-cCC---cccceEEc--CcEEEEECCC----CEEEEEhhHcceeeEEe--cCCC
Confidence 2 123444 33322210 011 111 11110022 7766665433 48889998876222221 1223
Q ss_pred ee-EEeecCCEEEEEEcCCCCCCcEEEEEeCC------CCCcc-ee-eecCCCCceeeeEEEeCC
Q 004368 333 DT-AASHRGNHFFITRRSDELFNSELLACPVD------NTSET-TV-LIPHRESVKLQDIQLFID 388 (758)
Q Consensus 333 ~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~------~~~~~-~~-l~~~~~~~~~~~~~~~~~ 388 (758)
.+ .|+++|+.+++++... .-|+..+.+ ..+.. .. ++.+ -...+.+..|.++
T Consensus 148 k~V~Ws~~g~~val~t~~~----i~il~~~~~~~~~~~~~g~e~~f~~~~E-~~~~IkSg~W~~d 207 (443)
T PF04053_consen 148 KYVIWSDDGELVALVTKDS----IYILKYNLEAVAAIPEEGVEDAFELIHE-ISERIKSGCWVED 207 (443)
T ss_dssp EEEEE-TTSSEEEEE-S-S----EEEEEE-HHHHHHBTTTB-GGGEEEEEE-E-S--SEEEEETT
T ss_pred cEEEEECCCCEEEEEeCCe----EEEEEecchhcccccccCchhceEEEEE-ecceeEEEEEEcC
Confidence 33 4999999999987653 556666554 10111 11 2222 1345778889999
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.98 E-value=4.4 Score=40.16 Aligned_cols=133 Identities=16% Similarity=0.107 Sum_probs=66.4
Q ss_pred CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHH-HHHHH-cC--cEEEEEecCCCCCCchhHHhccccc
Q 004368 495 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSR-LSLLD-RG--FIFAIAQIRGGGELGRQWYENGKFL 570 (758)
Q Consensus 495 dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~-~~l~~-~G--~~v~~~~~RG~g~~G~~~~~~~~~~ 570 (758)
.|..+....+.|--. +.+...|.|+++-|.||. .+|...+ ..|.. .+ .-+..+-.-|+-.....-.+.....
T Consensus 9 ~gl~~si~~~~~~v~-~~~~~~~li~~IpGNPG~---~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~ 84 (301)
T KOG3975|consen 9 SGLPTSILTLKPWVT-KSGEDKPLIVWIPGNPGL---LGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHT 84 (301)
T ss_pred cCCcccceeeeeeec-cCCCCceEEEEecCCCCc---hhHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccc
Confidence 344444444444433 445678999999997764 3344333 23322 22 2233333334433332111111111
Q ss_pred -CCcChHhHHHH-HHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCc---eeEEEEcCCccch
Q 004368 571 -KKKNTFTDFIA-CAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL---FKAAVAAVPFVDV 632 (758)
Q Consensus 571 -~~~~~~~D~~~-~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~---f~a~v~~~~~~d~ 632 (758)
...-+.+|.+. -+++ +++....-.||.++|||-|+|+++.++-..-+. -||+.+..-+.+|
T Consensus 85 ~~eifsL~~QV~HKlaF-ik~~~Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPTIerM 150 (301)
T KOG3975|consen 85 NEEIFSLQDQVDHKLAF-IKEYVPKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPTIERM 150 (301)
T ss_pred cccccchhhHHHHHHHH-HHHhCCCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecchHHHH
Confidence 11223334333 2333 333444558999999999999999988743222 3444444434443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.81 E-value=1.6 Score=50.02 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=55.0
Q ss_pred eEEEEEEEECCCCceeec--cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEE
Q 004368 215 EIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQ 291 (758)
Q Consensus 215 e~~~l~v~dl~~g~~~~~--~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~ 291 (758)
+.+.|.++|+.|.+..+. .-.+....+.||||| +|+-.+.|. .+..+++.++.--|-+.++. + ..+++
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-----tIr~wDlpt~~lID~~~vd~--~--~~sls 624 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-----TIRTWDLPTGTLIDGLLVDS--P--CTSLS 624 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-----cEEEEeccCcceeeeEecCC--c--ceeeE
Confidence 457899999988777663 122346779999999 665555554 37788998885545444432 2 34678
Q ss_pred EcCCCcEEEEEe
Q 004368 292 ASESKKFLFIAS 303 (758)
Q Consensus 292 ~S~Dg~~l~~~s 303 (758)
+||.|.+|+...
T Consensus 625 ~SPngD~LAT~H 636 (910)
T KOG1539|consen 625 FSPNGDFLATVH 636 (910)
T ss_pred ECCCCCEEEEEE
Confidence 999999997643
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.81 E-value=1.3 Score=46.37 Aligned_cols=117 Identities=20% Similarity=0.233 Sum_probs=70.5
Q ss_pred CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHc---C------cEEEEEecCCCCCCchhHHh
Q 004368 495 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR---G------FIFAIAQIRGGGELGRQWYE 565 (758)
Q Consensus 495 dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~---G------~~v~~~~~RG~g~~G~~~~~ 565 (758)
.|.+|+-.-+.|+...+..+..| ||+.||-+|+-.. |...+..|.+- | |-|++|-++|-| |.+
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~P-lLl~HGwPGsv~E--FykfIPlLT~p~~hg~~~d~~FEVI~PSlPGyg-----wSd 203 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKP-LLLLHGWPGSVRE--FYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYG-----WSD 203 (469)
T ss_pred cceeEEEEEecCCccccCCcccc-eEEecCCCchHHH--HHhhhhhhcCccccCCccceeEEEeccCCCCcc-----cCc
Confidence 68888877777765412233455 5557998876432 43333344332 2 568888888643 333
Q ss_pred cccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEE
Q 004368 566 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAA 623 (758)
Q Consensus 566 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~ 623 (758)
+. ...+-+.+.-..-..+.+...|+ ++..|.|+-+|..++..++..+|+.+.+.
T Consensus 204 ~~-sk~GFn~~a~ArvmrkLMlRLg~---nkffiqGgDwGSiI~snlasLyPenV~Gl 257 (469)
T KOG2565|consen 204 AP-SKTGFNAAATARVMRKLMLRLGY---NKFFIQGGDWGSIIGSNLASLYPENVLGL 257 (469)
T ss_pred CC-ccCCccHHHHHHHHHHHHHHhCc---ceeEeecCchHHHHHHHHHhhcchhhhHh
Confidence 22 12222322221112233455565 89999999999999999999999976554
|
|
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.85 Score=49.83 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=54.4
Q ss_pred CCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHH
Q 004368 533 AFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAV 612 (758)
Q Consensus 533 ~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~ 612 (758)
.|...+..|.+.||..- .+++| .+-+|+.... .....+..+...|+.+.+.. ..+|.|+||||||+++..+
T Consensus 66 ~~~~li~~L~~~GY~~~-~~l~~---~pYDWR~~~~--~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~f 136 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRG-KDLFA---APYDWRLSPA--ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYF 136 (389)
T ss_pred hHHHHHHHHHhcCcccC-CEEEE---Eeechhhchh--hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHH
Confidence 46677788888887631 11111 1234443322 11233456666777665543 5899999999999999999
Q ss_pred HhhCCC------ceeEEEEcCC
Q 004368 613 LNMRPD------LFKAAVAAVP 628 (758)
Q Consensus 613 ~~~~p~------~f~a~v~~~~ 628 (758)
+...+. .+++.|..++
T Consensus 137 l~~~~~~~W~~~~i~~~i~i~~ 158 (389)
T PF02450_consen 137 LQWMPQEEWKDKYIKRFISIGT 158 (389)
T ss_pred HHhccchhhHHhhhhEEEEeCC
Confidence 888753 3566666554
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.42 E-value=10 Score=40.79 Aligned_cols=196 Identities=15% Similarity=0.164 Sum_probs=102.8
Q ss_pred EEEeeEEECCCCC-EEEEEEeCCCCeEEEEEEEECCCCceeecc-----cc-CcceeEEEecCC--eEEEEEeCCCCCCc
Q 004368 191 YSVGCFQVSPDNK-LVAYAEDTKGDEIYTVYVIDIETGTPVGKP-----LV-GVTASVEWAGNE--ALVYITMDEILRPD 261 (758)
Q Consensus 191 ~~i~~~~~SPDG~-~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-----~~-~~~~~~~wspDg--~l~y~~~~~~~~~~ 261 (758)
-.+...+|.|-.. .|+-+-|..| +|-+||+.+.+...+. .. +-++++.|+|-+ +|+-++.|..
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G----~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt---- 258 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGG----QVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT---- 258 (498)
T ss_pred cceEEEEecccCcceEEEEccCCC----cEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce----
Confidence 4677889999776 5544444444 7899999643332211 11 126778999988 6776777664
Q ss_pred eEEEEEcCCCCCCcEEEeee-cCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeecccccee-eEEee
Q 004368 262 KAWLHKLEADQSNDICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVD-TAASH 338 (758)
Q Consensus 262 ~v~~~~l~~~~~~~~~v~~~-~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~-~~~s~ 338 (758)
+...++.....+ .++.- .+..++.+..++.+.+.+++..+-. .-.++.....+.+ ....+.+. .+. ..+.|
T Consensus 259 -iR~~D~~~~i~e--~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP 332 (498)
T KOG4328|consen 259 -IRLQDFEGNISE--EVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLHKK--KITSVALNP 332 (498)
T ss_pred -eeeeeecchhhH--HHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhhhhc--ccceeecCC
Confidence 566677665432 22222 2344555667888877777754433 3333333333332 12222222 222 23556
Q ss_pred cCCEEEEEEcCCCCCCcEEEEEeCCCCCc-ce-e--eecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEc
Q 004368 339 RGNHFFITRRSDELFNSELLACPVDNTSE-TT-V--LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 339 dg~~l~~~s~~~~~~~~~L~~~~~~~~~~-~~-~--l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l 407 (758)
-..+++.....+ ...+|| |+..... .. . .+++...+...-|++.+..|+-+.. + ..|+||+-
T Consensus 333 ~~p~~laT~s~D--~T~kIW--D~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~-D--~~IRv~ds 398 (498)
T KOG4328|consen 333 VCPWFLATASLD--QTAKIW--DLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ-D--NEIRVFDS 398 (498)
T ss_pred CCchheeecccC--cceeee--ehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc-C--CceEEeec
Confidence 666555554443 123344 4432111 11 1 4455544455567777777543333 3 34777765
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=89.22 E-value=27 Score=35.45 Aligned_cols=238 Identities=12% Similarity=0.108 Sum_probs=113.9
Q ss_pred EEeeEEEC--CCCC-EEEEEEe-CCCCeEEEEEEEECCCCceeec-cccCc--ceeEEEecCC-e----EEEEEeCCCCC
Q 004368 192 SVGCFQVS--PDNK-LVAYAED-TKGDEIYTVYVIDIETGTPVGK-PLVGV--TASVEWAGNE-A----LVYITMDEILR 259 (758)
Q Consensus 192 ~i~~~~~S--PDG~-~lAy~~~-~~G~e~~~l~v~dl~~g~~~~~-~~~~~--~~~~~wspDg-~----l~y~~~~~~~~ 259 (758)
.+.+..|| ||-+ +||.++- +.-+...+|.-.|.++++.+.. .++.. ..-+.|.||. . ++-++.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D---- 121 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD---- 121 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC----
Confidence 34455666 4444 6666532 2222345666677778887765 33322 4557899996 2 3333322
Q ss_pred CceEEEEEcCCCCCC--cEEEee-ecCCce---eeEEEEcC-CCcEEEEEecCCcceEEEEEeCC-CCC-ceEEeecccc
Q 004368 260 PDKAWLHKLEADQSN--DICLYH-EKDDIY---SLGLQASE-SKKFLFIASESKITRFVFYLDVS-KPE-ELRVLTPRVV 330 (758)
Q Consensus 260 ~~~v~~~~l~~~~~~--~~~v~~-~~~~~~---~~~~~~S~-Dg~~l~~~s~~~~~~~l~~~d~~-~~~-~~~~l~~~~~ 330 (758)
.|.+++++....+ ...++. ..+..+ ..++.|.. |-++ +.+++-.++.-||-+... .+. +.+.+....+
T Consensus 122 --~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~-igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE 198 (364)
T KOG0290|consen 122 --FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL-IGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE 198 (364)
T ss_pred --eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce-eEeecccCeEEEEEEeeccccceeeEEEecCcc
Confidence 2445555543211 111221 112222 22455655 4444 444555566666654432 111 2333333333
Q ss_pred ceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCC-CceeeeEEEeCCEE-EEEEEeCCeeEEEEEEcC
Q 004368 331 GVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE-SVKLQDIQLFIDHL-AVYEREGGLQKITTYRLP 408 (758)
Q Consensus 331 ~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l-~~~~~~~g~~~l~v~~l~ 408 (758)
-....|+..|..++.....+ +.+...|+......+.+..... ...+..++|.+.-. ++..-.....++.+.++.
T Consensus 199 V~DIaf~~~s~~~FASvgaD----GSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGAD----GSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred eeEEEeccCccceEEEecCC----CcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 23344777666666555554 3455667755333333433322 44566777765322 222222334556677776
Q ss_pred CCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEE
Q 004368 409 AVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHY 448 (758)
Q Consensus 409 ~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~ 448 (758)
.-..++ ..+..+..+|-+..+.+.+..-..+.
T Consensus 275 ~P~tpv--------a~L~~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 275 VPCTPV--------ARLRNHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred CCCcce--------ehhhcCcccccceEecCCCCceeeec
Confidence 433322 12233344555666666655544433
|
|
| >PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function | Back alignment and domain information |
|---|
Probab=88.83 E-value=1.1 Score=34.51 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCceeEEEEeeCCCCeEEEEEEEeecc-ccccCCCCCEEEEecCCCccCCC
Q 004368 482 NNYFTERKWASASDGTQIPICIVYRKN-LVKLDGSDPLLLYGYGSYEICND 531 (758)
Q Consensus 482 ~~~~~~~~~~~s~dG~~i~~~l~~p~~-~~~~~~~~P~vl~~hGg~~~~~~ 531 (758)
.+|.+|+..+++.||.-+.+.=+.++. .....++.|.|++.||-.+++..
T Consensus 8 ~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~ 58 (63)
T PF04083_consen 8 HGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDD 58 (63)
T ss_dssp TT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGG
T ss_pred cCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChHH
Confidence 467889999999999988776555444 11244678999999997666544
|
The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.82 E-value=24 Score=42.80 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=67.8
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec--cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
.+.|--||+++|.+.-..+...-.|.|+|-+ |..-.. +..+....++|-|.| .++-+...... ..-++.-+-|-.
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd-~~IvffErNGL~ 277 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSD-SDIVFFERNGLR 277 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCC-CcEEEEecCCcc
Confidence 4689999999998765555444789999987 443322 233446679999988 55554433221 111222222221
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCC
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~ 318 (758)
..+-.+-+.. |..-...+.|..++.-|++.......+.|.++-+.+
T Consensus 278 hg~f~l~~p~-de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 278 HGEFVLPFPL-DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccccccCCcc-cccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 1111111211 111134678999999888866555555455554443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.50 E-value=13 Score=37.81 Aligned_cols=141 Identities=12% Similarity=0.107 Sum_probs=79.9
Q ss_pred eEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc--ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEE
Q 004368 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 190 ~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~ 266 (758)
.+.+.++.|.-++..+- .|.=..+|.+||+..+..+-.. -.+.+.++.-||+| .+.=.+.+.. +.++
T Consensus 174 kyqltAv~f~d~s~qv~-----sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-----vrvw 243 (338)
T KOG0265|consen 174 KYQLTAVGFKDTSDQVI-----SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-----VRVW 243 (338)
T ss_pred ceeEEEEEeccccccee-----eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-----EEEE
Confidence 35666777777776653 1222457999999666554321 12235668889999 5554444432 4444
Q ss_pred EcCC--CCCCcEEEeeecCCce---eeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee--eEEeec
Q 004368 267 KLEA--DQSNDICLYHEKDDIY---SLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD--TAASHR 339 (758)
Q Consensus 267 ~l~~--~~~~~~~v~~~~~~~~---~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~--~~~s~d 339 (758)
++.. ....-+.+|+...-.| .+..+|||+++++.+.+.+ ..+|++|..... .....++..+.. ..|.|.
T Consensus 244 d~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~d---r~vyvwd~~~r~-~lyklpGh~gsvn~~~Fhp~ 319 (338)
T KOG0265|consen 244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD---RFVYVWDTTSRR-ILYKLPGHYGSVNEVDFHPT 319 (338)
T ss_pred EecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccccc---ceEEEeeccccc-EEEEcCCcceeEEEeeecCC
Confidence 4332 1122366777655443 3567899999998765544 347888876643 333334333321 236665
Q ss_pred CCEEE
Q 004368 340 GNHFF 344 (758)
Q Consensus 340 g~~l~ 344 (758)
...+.
T Consensus 320 e~iil 324 (338)
T KOG0265|consen 320 EPIIL 324 (338)
T ss_pred CcEEE
Confidence 55333
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=88.43 E-value=40 Score=36.27 Aligned_cols=144 Identities=11% Similarity=0.101 Sum_probs=75.7
Q ss_pred EEEEcCCCcEEEEEecCCcceEEEEEeCCCCC----ceEEeecc-ccceee-EEeecCCEEEEEEcCCCCCCcEEEEEeC
Q 004368 289 GLQASESKKFLFIASESKITRFVFYLDVSKPE----ELRVLTPR-VVGVDT-AASHRGNHFFITRRSDELFNSELLACPV 362 (758)
Q Consensus 289 ~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~----~~~~l~~~-~~~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~ 362 (758)
+++|++.-..-+++......-.+|-+.....+ .++.+..+ ...++. .|.+-...++-...++ .+|...|+
T Consensus 182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd----~~L~iwD~ 257 (422)
T KOG0264|consen 182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD----GKLMIWDT 257 (422)
T ss_pred ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC----CeEEEEEc
Confidence 46788866665555554444444444332221 22233322 222222 2555555555554444 67888888
Q ss_pred CCC-Ccce-eeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccC
Q 004368 363 DNT-SETT-VLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFS 440 (758)
Q Consensus 363 ~~~-~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d 440 (758)
... .... .+..+..++.-..|.+.++.++.+...++. |.+|++..=.. ....+..+...|..+.+++.
T Consensus 258 R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t--V~LwDlRnL~~--------~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 258 RSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT--VALWDLRNLNK--------PLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred CCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc--EEEeechhccc--------CceeccCCCcceEEEEeCCC
Confidence 741 1222 244455555566777788888877776664 77888762111 22334443333444556666
Q ss_pred CcEEEE
Q 004368 441 SRILRF 446 (758)
Q Consensus 441 ~~~l~~ 446 (758)
..++..
T Consensus 328 ~etvLA 333 (422)
T KOG0264|consen 328 NETVLA 333 (422)
T ss_pred CCceeE
Confidence 666543
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=88.31 E-value=0.92 Score=41.35 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=27.5
Q ss_pred HhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhh
Q 004368 576 FTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM 615 (758)
Q Consensus 576 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 615 (758)
.+.+...++.+.++.- +.+|.+.|||.||.++..++..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 3456666666665543 4899999999999988766654
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.22 E-value=3.5 Score=45.02 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=32.7
Q ss_pred EEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccceeeE-EeecCCEEEEE
Q 004368 289 GLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGVDTA-ASHRGNHFFIT 346 (758)
Q Consensus 289 ~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~~~~~-~s~dg~~l~~~ 346 (758)
.+.+||||++|+..+.+. . |.++|.++.+ +.-+.+ -..+.... |||||++|+.-
T Consensus 295 ~f~FS~DG~~LA~VSqDG-f--LRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 295 EFAFSPDGKYLATVSQDG-F--LRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred ceeEcCCCceEEEEecCc-e--EEEeeccHHH-HHHHHHhhccceEEEEEcCCccEEEec
Confidence 356899999998866543 3 4455555544 333333 23444443 99999966543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.21 E-value=10 Score=39.65 Aligned_cols=146 Identities=12% Similarity=0.159 Sum_probs=77.6
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCce----eecccc-----CcceeEEEecCCeEEEEEeCCCCCCc
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP----VGKPLV-----GVTASVEWAGNEALVYITMDEILRPD 261 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~----~~~~~~-----~~~~~~~wspDg~l~y~~~~~~~~~~ 261 (758)
-.+..+.+|.+|++|| .|++.....+|+++.--. .++.+. ..+..++|.-.++++|.... ..
T Consensus 57 GCiNAlqFS~N~~~L~-----SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~----~~ 127 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLA-----SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER----WG 127 (609)
T ss_pred cccceeeeccCCeEEe-----ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC----cc
Confidence 3578889999999998 455567888888764211 111111 11334677444477787543 34
Q ss_pred eEEEEEcCCCCCCcEEEeeecCCc-eeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-c--eEEeeccccceee-EE
Q 004368 262 KAWLHKLEADQSNDICLYHEKDDI-YSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-E--LRVLTPRVVGVDT-AA 336 (758)
Q Consensus 262 ~v~~~~l~~~~~~~~~v~~~~~~~-~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~--~~~l~~~~~~~~~-~~ 336 (758)
+|..|++.+.+ .+-++.+.+.+ -......+|-...+++.+. ...|.++|..... . +.++......+.. .|
T Consensus 128 ~VI~HDiEt~q--si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~---~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 128 TVIKHDIETKQ--SIYVANENNNRGDVYHMDQHPTDNTLIVVTR---AKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred eeEeeecccce--eeeeecccCcccceeecccCCCCceEEEEec---CceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 69999999874 34556554421 1223445664333333222 2345556665433 2 2233222222222 25
Q ss_pred eecCCEEEEEEcCC
Q 004368 337 SHRGNHFFITRRSD 350 (758)
Q Consensus 337 s~dg~~l~~~s~~~ 350 (758)
.|-.-.|+.+.+..
T Consensus 203 ~P~~P~Li~~~~~~ 216 (609)
T KOG4227|consen 203 HPETPALILVNSET 216 (609)
T ss_pred cCCCceeEEecccc
Confidence 56555566555554
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.15 E-value=32 Score=36.02 Aligned_cols=111 Identities=10% Similarity=-0.004 Sum_probs=63.7
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCcee-e-c-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-G-K-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~-~-~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~ 267 (758)
++..+.++.-|++||=.+. ...+.+||.++-... . . .-+...+.+.+-|-| .|+-.+.|. .+..++
T Consensus 152 sv~di~~~a~Gk~l~tcSs-----Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~-----tik~We 221 (406)
T KOG0295|consen 152 SVFDISFDASGKYLATCSS-----DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN-----TIKAWE 221 (406)
T ss_pred ceeEEEEecCccEEEecCC-----ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccccc-----ceeEEe
Confidence 4778889999998874433 234788887653111 1 1 112246778899998 665444333 366777
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeC
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV 316 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~ 316 (758)
+.++- -+-.|... +.+.-.+..+-||..++-. +...+-.+|.+..
T Consensus 222 ~~tg~--cv~t~~~h-~ewvr~v~v~~DGti~As~-s~dqtl~vW~~~t 266 (406)
T KOG0295|consen 222 CDTGY--CVKTFPGH-SEWVRMVRVNQDGTIIASC-SNDQTLRVWVVAT 266 (406)
T ss_pred cccce--eEEeccCc-hHhEEEEEecCCeeEEEec-CCCceEEEEEecc
Confidence 77763 33344433 3355557788888654432 2233455665543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=87.98 E-value=28 Score=39.84 Aligned_cols=160 Identities=11% Similarity=0.100 Sum_probs=76.5
Q ss_pred EEEEcCCCcEEEEEecC-CcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC---
Q 004368 289 GLQASESKKFLFIASES-KITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDN--- 364 (758)
Q Consensus 289 ~~~~S~Dg~~l~~~s~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~--- 364 (758)
.+.+++||+++++++.+ .....+-.++..+.. ......- ...+ .+..+|+..++ + + .++.++|...
T Consensus 239 ~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvfni-~~ie-a~vkdGK~~~V--~-g----n~V~VID~~t~~~ 308 (635)
T PRK02888 239 NVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVFNI-ARIE-EAVKAGKFKTI--G-G----SKVPVVDGRKAAN 308 (635)
T ss_pred cceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEEch-HHHH-HhhhCCCEEEE--C-C----CEEEEEECCcccc
Confidence 45789999999988733 333456666664433 2222211 1111 24567886665 2 1 3677788654
Q ss_pred -CCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCcc-ccccCCceee-ccCcccccCCCCcccCC
Q 004368 365 -TSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPL-KSLQGGKSVE-FIDPVYSIDPSESVFSS 441 (758)
Q Consensus 365 -~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~-~~l~~~~~i~-~p~~~~~i~~~~~~~d~ 441 (758)
.......++-....---.++++++++++. ....+.+.|+++..-.... ..+.....+. -++ . -.......+|+
T Consensus 309 ~~~~v~~yIPVGKsPHGV~vSPDGkylyVa--nklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-v-GlGPLHTaFDg 384 (635)
T PRK02888 309 AGSALTRYVPVPKNPHGVNTSPDGKYFIAN--GKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-L-GLGPLHTAFDG 384 (635)
T ss_pred CCcceEEEEECCCCccceEECCCCCEEEEe--CCCCCcEEEEEChhhhhhhhccCCccceEEEeec-c-CCCcceEEECC
Confidence 11122234433221122445555666544 3445567888876311100 0000000010 000 0 01122223444
Q ss_pred cEEEEEEecCCCCCEEEEEECCC
Q 004368 442 RILRFHYSSLRTPPSVYDYDMDM 464 (758)
Q Consensus 442 ~~l~~~~sS~~~P~~i~~~d~~~ 464 (758)
+-- .|+|+-.-+++..+|+.+
T Consensus 385 ~G~--aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 385 RGN--AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCC--EEEeEeecceeEEEehHH
Confidence 432 556777777899998765
|
|
| >PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children | Back alignment and domain information |
|---|
Probab=87.79 E-value=2.4 Score=43.29 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=44.8
Q ss_pred CCCCCEEEEecCCCccCCCCCCChHHHHHHHc---CcEEEEEecCCCCCCchhHHhcccccCCcChHhHH-HHHHHHHHH
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR---GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF-IACAEYLIK 588 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~---G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~-~~~~~~l~~ 588 (758)
..+.|+|| .||-...+..+.-......++++ |.-|..++. |.+.. .+ ...+.. ..+.+. ..+.+-|..
T Consensus 3 ~~~~PvVi-wHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~i-g~~~~-~D-~~~s~f----~~v~~Qv~~vc~~l~~ 74 (279)
T PF02089_consen 3 PSPLPVVI-WHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEI-GNDPS-ED-VENSFF----GNVNDQVEQVCEQLAN 74 (279)
T ss_dssp TSS--EEE-E--TT--S--TTTHHHHHHHHHHHSTT--EEE--S-SSSHH-HH-HHHHHH----SHHHHHHHHHHHHHHH
T ss_pred CCCCcEEE-EEcCccccCChhHHHHHHHHHHHhCCCceEEEEEE-CCCcc-hh-hhhhHH----HHHHHHHHHHHHHHhh
Confidence 34567666 49854333222112233445443 766666654 22110 00 000000 112333 334444554
Q ss_pred cCCCCCCcEEEEEeChhHHHHHHHHhhCCC-ceeEEEEc
Q 004368 589 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPD-LFKAAVAA 626 (758)
Q Consensus 589 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~ 626 (758)
..... +-+-++|+|.||.+.=+++.++|+ ..+-.|..
T Consensus 75 ~p~L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISl 112 (279)
T PF02089_consen 75 DPELA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISL 112 (279)
T ss_dssp -GGGT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEE
T ss_pred Chhhh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEe
Confidence 33332 679999999999999888888865 35555544
|
Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A. |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.65 E-value=45 Score=36.46 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=91.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccC--cceeEEEecCC-eEEEEEeCCCCCCceEEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~ 267 (758)
.+..+...-...+||-+++ +| +|.|..++++..... .++. ...-+.+||-. .++-+..+.+ .|-+++
T Consensus 123 tvt~v~YN~~DeyiAsvs~-gG----diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G----~VtlwD 193 (673)
T KOG4378|consen 123 TVTYVDYNNTDEYIASVSD-GG----DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKG----AVTLWD 193 (673)
T ss_pred eeEEEEecCCcceeEEecc-CC----cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCC----eEEEEe
Confidence 3445555666677775554 23 588888888765432 3332 23346788887 4554544433 366677
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEE
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITR 347 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s 347 (758)
+.+. ....-+.+....-..++.+||....|+++..- ..+|+++|........+|+-...-....|+++|-.|.+-
T Consensus 194 v~g~--sp~~~~~~~HsAP~~gicfspsne~l~vsVG~--Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG- 268 (673)
T KOG4378|consen 194 VQGM--SPIFHASEAHSAPCRGICFSPSNEALLVSVGY--DKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAG- 268 (673)
T ss_pred ccCC--CcccchhhhccCCcCcceecCCccceEEEecc--cceEEEeecccccccceeeecCCcceeeecCCceEEEee-
Confidence 7544 23333433333334467899998888876653 356888888654422333322221233488888766543
Q ss_pred cCCCCCCcEEEEEeCCC
Q 004368 348 RSDELFNSELLACPVDN 364 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~ 364 (758)
..+++|+.+|+..
T Consensus 269 ----~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 269 ----NSKGELIAYDMRS 281 (673)
T ss_pred ----cCCceEEEEeccc
Confidence 2357899999875
|
|
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=87.59 E-value=12 Score=41.03 Aligned_cols=116 Identities=21% Similarity=0.199 Sum_probs=72.5
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHH-cCcE-EEEEecCCCCCC---chhHHhccc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFI-FAIAQIRGGGEL---GRQWYENGK 568 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~-v~~~~~RG~g~~---G~~~~~~~~ 568 (758)
..+.++- +.+.|-+. +.|+.||.-| |.. ..+|.. ..++. .|.- .++-|.|--||. |.+=++
T Consensus 273 ~~reEi~-yYFnPGD~-----KPPL~VYFSG-yR~--aEGFEg--y~MMk~Lg~PfLL~~DpRleGGaFYlGs~eyE--- 338 (511)
T TIGR03712 273 SKRQEFI-YYFNPGDF-----KPPLNVYFSG-YRP--AEGFEG--YFMMKRLGAPFLLIGDPRLEGGAFYLGSDEYE--- 338 (511)
T ss_pred CCCCeeE-EecCCcCC-----CCCeEEeecc-Ccc--cCcchh--HHHHHhcCCCeEEeeccccccceeeeCcHHHH---
Confidence 3455663 34667665 4699999877 332 334543 22232 3443 566788865541 322121
Q ss_pred ccCCcChHhHHHHHHHH-HHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh
Q 004368 569 FLKKKNTFTDFIACAEY-LIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT 634 (758)
Q Consensus 569 ~~~~~~~~~D~~~~~~~-l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~ 634 (758)
.-++..|+. |...| .+.+.+.+.|.|||-+-|+..++.- .-+|+|..=|++++-.
T Consensus 339 --------~~I~~~I~~~L~~Lg-F~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~NLGt 394 (511)
T TIGR03712 339 --------QGIINVIQEKLDYLG-FDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVNLGT 394 (511)
T ss_pred --------HHHHHHHHHHHHHhC-CCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccchhh
Confidence 334555543 44445 4789999999999999998888763 1389999999998644
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=87.27 E-value=8.3 Score=42.90 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=55.2
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
+...++||+.++++.+... ..|.++|...+........-...-++|.|||.++.+..+.+ ++...|++-..
T Consensus 262 v~~ca~sp~E~kLvlGC~D-----gSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qG----elQ~FD~ALsp 332 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCED-----GSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQG----ELQCFDMALSP 332 (545)
T ss_pred ceEEecCcccceEEEEecC-----CeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCc----eEEEEEeecCc
Confidence 4567899999999987652 46899998776544322222245589999998777765543 47777777665
Q ss_pred CCcEEEeeecCCce
Q 004368 273 SNDICLYHEKDDIY 286 (758)
Q Consensus 273 ~~~~~v~~~~~~~~ 286 (758)
-+-.++-++..+..
T Consensus 333 i~~qLlsEd~~P~~ 346 (545)
T PF11768_consen 333 IKMQLLSEDATPKS 346 (545)
T ss_pred cceeeccccCCCcc
Confidence 44444445444443
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=87.26 E-value=0.79 Score=51.29 Aligned_cols=67 Identities=10% Similarity=0.163 Sum_probs=48.8
Q ss_pred eEEEeccCCCCCCCChHHHHHHHHHHhcCCC-----CceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 679 HILVTAGLNDPRVMYSEPAKFVAKLREMKTD-----DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 679 ~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~-----~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
.||+.||..|+.|++..+..|++++.+.-.. .+++.|-..++.+|..+.......+.+....+|.++
T Consensus 355 KLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 355 KLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred eEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 3999999999999999999999999876422 345666666799998754433334444445677764
|
It also includes several bacterial homologues of unknown function. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=87.18 E-value=22 Score=38.52 Aligned_cols=101 Identities=11% Similarity=0.093 Sum_probs=51.0
Q ss_pred ceeEEEecCCeEEEEEeCCCCCCceEEEE-EcCCCC-C--CcEEEeeecCC------ceeeEEEEcCCCcEEEEEecCCc
Q 004368 238 TASVEWAGNEALVYITMDEILRPDKAWLH-KLEADQ-S--NDICLYHEKDD------IYSLGLQASESKKFLFIASESKI 307 (758)
Q Consensus 238 ~~~~~wspDg~l~y~~~~~~~~~~~v~~~-~l~~~~-~--~~~~v~~~~~~------~~~~~~~~S~Dg~~l~~~s~~~~ 307 (758)
..+++|.+|| +|. +.. .+|++. +...+. . +.+.++..-.. ....++.|.|||+ |+++..+..
T Consensus 74 p~Gi~~~~~G-lyV-~~~-----~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~ 145 (367)
T TIGR02604 74 VTGLAVAVGG-VYV-ATP-----PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTL 145 (367)
T ss_pred ccceeEecCC-EEE-eCC-----CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCC
Confidence 3568999998 544 321 146655 332211 1 22334332111 1223578999995 566544210
Q ss_pred -----------------ceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEEEEc
Q 004368 308 -----------------TRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRR 348 (758)
Q Consensus 308 -----------------~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~ 348 (758)
...++.++.++++ ...+.....+ ....|+++|+ +++.-|
T Consensus 146 ~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 146 ASKVTRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred CceeccCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCC-EEEEcc
Confidence 1357888887765 5555443222 2234777765 444434
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.14 E-value=13 Score=35.92 Aligned_cols=112 Identities=23% Similarity=0.292 Sum_probs=67.7
Q ss_pred eEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC--cceeEEEecCC-eEEEEEeCCCCCCceEEEE
Q 004368 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 190 ~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~ 266 (758)
.-.+.++.+-|.|++|| .|.+.....++|+.+|+..+.--+. -+..+.|||.. .++-.+.+. ++.+.
T Consensus 231 ssavaav~vdpsgrll~-----sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~-----~iklt 300 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLA-----SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM-----KIKLT 300 (350)
T ss_pred cceeEEEEECCCcceee-----eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccc-----eEEEe
Confidence 45778889999999998 4555677888999999987642222 25668999987 444334443 46666
Q ss_pred EcCCCCCC--cEEEeee-cCCceeeEEEEcCCCcEEEEEecCCcceEEEEE
Q 004368 267 KLEADQSN--DICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVFYL 314 (758)
Q Consensus 267 ~l~~~~~~--~~~v~~~-~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~ 314 (758)
++..+-.. ...+..| +|. .+...|.|.. +-+++++...+..+|.+
T Consensus 301 dlqgdla~el~~~vv~ehkdk--~i~~rwh~~d-~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDK--AIQCRWHPQD-FSFISSSADKTATLWAL 348 (350)
T ss_pred ecccchhhcCceEEEEeccCc--eEEEEecCcc-ceeeeccCcceEEEecc
Confidence 66544322 1223333 333 3456788864 33444444444556654
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.88 E-value=39 Score=34.46 Aligned_cols=98 Identities=12% Similarity=0.017 Sum_probs=64.0
Q ss_pred CCeEEEEEEEECCCCceeec-cccCcceeEEEecCC---eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceee
Q 004368 213 GDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE---ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSL 288 (758)
Q Consensus 213 G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg---~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~ 288 (758)
++-.-+|.|||..|-+...+ ..++.+.+-+|||=. .++.+..+ ..+|.+-++.++. -.-.+.+... -.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr----~~~VrLCDi~SGs--~sH~LsGHr~-~vl 192 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTR----DVQVRLCDIASGS--FSHTLSGHRD-GVL 192 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecC----CCcEEEEeccCCc--ceeeeccccC-ceE
Confidence 45557899999988665543 556655557899976 35444433 3357777888773 2233433332 345
Q ss_pred EEEEcCCCcEEEEEecCCcceEEEEEeCC
Q 004368 289 GLQASESKKFLFIASESKITRFVFYLDVS 317 (758)
Q Consensus 289 ~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~ 317 (758)
.+.|||...|++.+....+.-++|-+.-.
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRra 221 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRA 221 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecc
Confidence 78999999999988776666666655444
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=86.75 E-value=33 Score=39.32 Aligned_cols=161 Identities=13% Similarity=-0.003 Sum_probs=85.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC-cceeEEEecCCeEEEEEeCCCCCCceEEEEEc-C
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNEALVYITMDEILRPDKAWLHKL-E 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l-~ 269 (758)
.+.++.+|+||+.+|+... . ...+++... ++.... .+.+ ....+.|.++|.++ +..+.. +.+|.+.+- +
T Consensus 344 ~~~s~avS~~g~~~A~~~~---~-~~~l~~~~~-g~~~~~-~~~g~~Lt~PS~d~~g~vW-tv~~g~--~~~vv~~~~~g 414 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNG---S-RTTLYTVSP-GQPARA-LTSGSTLTRPSFSPQDWVW-TAGPGG--NGRIVAYRPTG 414 (573)
T ss_pred cccceeecCCCceEEEecC---C-CcEEEEecC-CCccee-eecCCCccCCcccCCCCEE-EeeCCC--CceEEEEecCC
Confidence 4667899999999999732 2 257777665 333322 2222 24568898888444 433321 224555332 2
Q ss_pred CCCCC--c--EEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeC---CCCCceEEeeccc------cceeeEE
Q 004368 270 ADQSN--D--ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV---SKPEELRVLTPRV------VGVDTAA 336 (758)
Q Consensus 270 ~~~~~--~--~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~---~~~~~~~~l~~~~------~~~~~~~ 336 (758)
++... . ......-+..-...+..|+||-.+++.....+..+|++.-+ .++. ++.|+... ......|
T Consensus 415 ~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~-P~~L~~~~~~~~~~~~~sl~W 493 (573)
T PRK13614 415 VAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGT-PRELTAPITLAADSDADTGAW 493 (573)
T ss_pred CcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCC-eEEccCceecccCCCcceeEE
Confidence 21100 0 11111111222446789999999988775555556666332 2332 44443221 1122347
Q ss_pred eecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 337 SHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 337 s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
..++ .|++++... ..+..++.+.+..
T Consensus 494 ~~~~-sl~V~~~~~-~~~~~~~~v~v~~ 519 (573)
T PRK13614 494 VGDS-TVVVTKASA-TSNVVPELLSVDA 519 (573)
T ss_pred cCCC-EEEEEeccC-CCcceEEEEEeCC
Confidence 6654 477776554 2455677777743
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.64 E-value=39 Score=36.49 Aligned_cols=110 Identities=17% Similarity=0.265 Sum_probs=54.3
Q ss_pred eeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCC-EEEEEEcCCCCCCcEEEEEeCCCC
Q 004368 287 SLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGN-HFFITRRSDELFNSELLACPVDNT 365 (758)
Q Consensus 287 ~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~-~l~~~s~~~~~~~~~L~~~~~~~~ 365 (758)
.+.++.|+||+||+... ....|.++|.++.+..+.+..+.+.+....-..|. .+|..+.+. .+-.++++..
T Consensus 205 il~~avS~Dgkylatgg---~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr-----svkvw~~~~~ 276 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGG---RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR-----SVKVWSIDQL 276 (479)
T ss_pred eEEEEEcCCCcEEEecC---CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCC-----ceEEEehhHh
Confidence 45678999999988632 23456678888876333333333333222112232 344333221 2333333321
Q ss_pred CcceeeecCCCCceeeeEEEeC-CEEEEEEEeCCeeEEEEEEcC
Q 004368 366 SETTVLIPHRESVKLQDIQLFI-DHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+....++.++. .+.+++... .+++-+.-++.. +++|.++
T Consensus 277 s~vetlyGHqd--~v~~IdaL~reR~vtVGgrDrT--~rlwKi~ 316 (479)
T KOG0299|consen 277 SYVETLYGHQD--GVLGIDALSRERCVTVGGRDRT--VRLWKIP 316 (479)
T ss_pred HHHHHHhCCcc--ceeeechhcccceEEeccccce--eEEEecc
Confidence 12222555543 345665544 455555545554 5567775
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.58 E-value=1.6 Score=45.13 Aligned_cols=141 Identities=15% Similarity=0.205 Sum_probs=78.4
Q ss_pred CceEEeecccccCCCC---eEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCc-eeecccc--CcceeEEEecCC
Q 004368 174 PEHLILDENVKAEGRG---FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT-PVGKPLV--GVTASVEWAGNE 247 (758)
Q Consensus 174 ~~~vllD~n~~~~~~~---~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~-~~~~~~~--~~~~~~~wspDg 247 (758)
...+|+|..+-..-.. ...-..+.|+|. -..|+. |+|.++||.+|+..=+ ++..-.+ ...-++.|||-|
T Consensus 210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPe--afnF~~---a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVILTMRTNTICWNPE--AFNFVA---ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred CceEEEecccCCccceeeeeccccceecCcc--ccceee---ccccccceehhhhhhcccchhhcccceeEEEeccCCCc
Confidence 4467777654332111 112346789993 233443 6778999999975321 1111111 235568999999
Q ss_pred -eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEee
Q 004368 248 -ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT 326 (758)
Q Consensus 248 -~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~ 326 (758)
.|+-.+.|.. +.+..+..+... -+|....-...+.+.||-|.+||+- .++..+-+||...... .+-+++
T Consensus 285 ~EfvsgsyDks-----IRIf~~~~~~SR--diYhtkRMq~V~~Vk~S~Dskyi~S-GSdd~nvRlWka~Ase--klgv~t 354 (433)
T KOG0268|consen 285 QEFVSGSYDKS-----IRIFPVNHGHSR--DIYHTKRMQHVFCVKYSMDSKYIIS-GSDDGNVRLWKAKASE--KLGVIT 354 (433)
T ss_pred chhccccccce-----EEEeecCCCcch--hhhhHhhhheeeEEEEeccccEEEe-cCCCcceeeeecchhh--hcCCCC
Confidence 6766666553 444455444332 2443333333457899999999753 4444556778766543 233445
Q ss_pred ccc
Q 004368 327 PRV 329 (758)
Q Consensus 327 ~~~ 329 (758)
+++
T Consensus 355 ~rE 357 (433)
T KOG0268|consen 355 PRE 357 (433)
T ss_pred hhH
Confidence 443
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.54 E-value=24 Score=40.52 Aligned_cols=197 Identities=9% Similarity=-0.057 Sum_probs=102.6
Q ss_pred CceEEeecccccC--------CCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCc--ceeEEE
Q 004368 174 PEHLILDENVKAE--------GRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV--TASVEW 243 (758)
Q Consensus 174 ~~~vllD~n~~~~--------~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~--~~~~~w 243 (758)
+.-++.|.|.... +| ..++..+.|++-.-.|..+-.. ...|.+||+....-......+. +..+.|
T Consensus 110 G~i~vWdlnk~~rnk~l~~f~EH-~Rs~~~ldfh~tep~iliSGSQ----Dg~vK~~DlR~~~S~~t~~~nSESiRDV~f 184 (839)
T KOG0269|consen 110 GVISVWDLNKSIRNKLLTVFNEH-ERSANKLDFHSTEPNILISGSQ----DGTVKCWDLRSKKSKSTFRSNSESIRDVKF 184 (839)
T ss_pred CcEEEEecCccccchhhhHhhhh-ccceeeeeeccCCccEEEecCC----CceEEEEeeecccccccccccchhhhceee
Confidence 4567777776211 12 2467788898888877765444 4589999998776655322222 556899
Q ss_pred ecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC--
Q 004368 244 AGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-- 320 (758)
Q Consensus 244 spDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-- 320 (758)
+|-- ..|+...+.+ -|-.++|..... -..-+.. .....+.+.|+|++.||+-. ++.....|| |..++.
T Consensus 185 sp~~~~~F~s~~dsG----~lqlWDlRqp~r-~~~k~~A-H~GpV~c~nwhPnr~~lATG-GRDK~vkiW--d~t~~~~~ 255 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSG----YLQLWDLRQPDR-CEKKLTA-HNGPVLCLNWHPNREWLATG-GRDKMVKIW--DMTDSRAK 255 (839)
T ss_pred ccCCCceEEEecCCc----eEEEeeccCchh-HHHHhhc-ccCceEEEeecCCCceeeec-CCCccEEEE--eccCCCcc
Confidence 9976 4444444433 255667654311 1112222 22334567899998887643 333445555 444433
Q ss_pred ceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC
Q 004368 321 ELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI 387 (758)
Q Consensus 321 ~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 387 (758)
....+.....-...-|-|+-.+.+..+... ....|.++|+.-|=..-..+.+. ...+.++.|..
T Consensus 256 ~~~tInTiapv~rVkWRP~~~~hLAtcsmv--~dtsV~VWDvrRPYIP~~t~~eH-~~~vt~i~W~~ 319 (839)
T KOG0269|consen 256 PKHTINTIAPVGRVKWRPARSYHLATCSMV--VDTSVHVWDVRRPYIPYATFLEH-TDSVTGIAWDS 319 (839)
T ss_pred ceeEEeecceeeeeeeccCccchhhhhhcc--ccceEEEEeeccccccceeeecc-CccccceeccC
Confidence 122221111101122667655433333322 24678888876542222222222 22455666665
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=85.93 E-value=43 Score=34.06 Aligned_cols=33 Identities=36% Similarity=0.378 Sum_probs=26.2
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCcee
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 230 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~ 230 (758)
-...+||||+..|||+.+. .+|+|+|+.+.+..
T Consensus 46 WRkl~WSpD~tlLa~a~S~-----G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAEST-----GTIRVFDLMGSELF 78 (282)
T ss_pred heEEEECCCCcEEEEEcCC-----CeEEEEecccceeE
Confidence 4567999999999999873 36889999876554
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.86 E-value=33 Score=37.08 Aligned_cols=60 Identities=22% Similarity=0.188 Sum_probs=39.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCC-eEEEEEeCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNE-ALVYITMDE 256 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg-~l~y~~~~~ 256 (758)
.+-..++||||++||++- -...|.|||..+.+.+.. . ..+.+.+.+|-..- .+|-.+.|.
T Consensus 204 eil~~avS~Dgkylatgg-----~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGG-----RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR 266 (479)
T ss_pred eeEEEEEcCCCcEEEecC-----CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCC
Confidence 455679999999999642 246788999999988764 1 22335567774333 565555443
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.65 E-value=9.3 Score=43.70 Aligned_cols=119 Identities=11% Similarity=0.103 Sum_probs=73.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCcee--eccc-cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV--GKPL-VGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~--~~~~-~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
++..++|||--...-++...+| .|..||+..-..- +.+. .+......|+|++.++.+.. |...+.+++.
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG----~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG----RDK~vkiWd~ 249 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSG----YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG----RDKMVKIWDM 249 (839)
T ss_pred hhhceeeccCCCceEEEecCCc----eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC----CCccEEEEec
Confidence 5778889986555545555555 5888898643321 1121 23355579999874444443 3334666677
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
++.............+ .-.+.|-|+..+.+.++..-....|+++|+..+-
T Consensus 250 t~~~~~~~~tInTiap--v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 250 TDSRAKPKHTINTIAP--VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred cCCCccceeEEeecce--eeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 7654433333322222 2357899999988777777677788999987654
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=85.39 E-value=1.2 Score=41.43 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCC
Q 004368 577 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP 617 (758)
Q Consensus 577 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p 617 (758)
..+...++....+ ....+|.++|||+||.++..++....
T Consensus 12 ~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 12 NLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred HHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3344444443332 24589999999999999988777654
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=85.35 E-value=46 Score=33.87 Aligned_cols=162 Identities=8% Similarity=0.060 Sum_probs=83.1
Q ss_pred CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce-eeEEeecCCEEEEEEcCCCCCCcEEEEEe
Q 004368 283 DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSDELFNSELLACP 361 (758)
Q Consensus 283 ~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~ 361 (758)
...|.-++.+..|| .|+-++..-+.|.|..+|+++++ ...-.+-.... .-.+..-+++||-+|.++ ...++.|
T Consensus 43 ~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~-~~~~~~l~~~~FgEGit~~~d~l~qLTWk~----~~~f~yd 116 (264)
T PF05096_consen 43 PTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGK-VLQSVPLPPRYFGEGITILGDKLYQLTWKE----GTGFVYD 116 (264)
T ss_dssp TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSS-EEEEEE-TTT--EEEEEEETTEEEEEESSS----SEEEEEE
T ss_pred CcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCc-EEEEEECCccccceeEEEECCEEEEEEecC----CeEEEEc
Confidence 34455567675565 46677777788999999999987 32222211111 112555688999999986 4678888
Q ss_pred CCCCCcceeeecC-CCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCC-ccc
Q 004368 362 VDNTSETTVLIPH-RESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSE-SVF 439 (758)
Q Consensus 362 ~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~-~~~ 439 (758)
.++..... -++. .+. =+++.+++.|+ ..+|.++|+.++... -+.. +.+........+...| ..+
T Consensus 117 ~~tl~~~~-~~~y~~EG---WGLt~dg~~Li---~SDGS~~L~~~dP~~-f~~~------~~i~V~~~g~pv~~LNELE~ 182 (264)
T PF05096_consen 117 PNTLKKIG-TFPYPGEG---WGLTSDGKRLI---MSDGSSRLYFLDPET-FKEV------RTIQVTDNGRPVSNLNELEY 182 (264)
T ss_dssp TTTTEEEE-EEE-SSS-----EEEECSSCEE---EE-SSSEEEEE-TTT--SEE------EEEE-EETTEE---EEEEEE
T ss_pred cccceEEE-EEecCCcc---eEEEcCCCEEE---EECCccceEEECCcc-cceE------EEEEEEECCEECCCcEeEEE
Confidence 76532211 1221 111 13345566665 347888888776442 1111 2222211111111111 112
Q ss_pred CCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 440 SSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 440 d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
-.+.++... =.-+.|+++|+.+|+.
T Consensus 183 i~G~IyANV---W~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 183 INGKIYANV---WQTDRIVRIDPETGKV 207 (264)
T ss_dssp ETTEEEEEE---TTSSEEEEEETTT-BE
T ss_pred EcCEEEEEe---CCCCeEEEEeCCCCeE
Confidence 233444333 2457899999999984
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=85.07 E-value=8.4 Score=39.49 Aligned_cols=130 Identities=19% Similarity=0.263 Sum_probs=75.4
Q ss_pred ceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCce------eeccccCcceeEEEecCC-
Q 004368 175 EHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP------VGKPLVGVTASVEWAGNE- 247 (758)
Q Consensus 175 ~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~------~~~~~~~~~~~~~wspDg- 247 (758)
.-|||--|.- ...+.|||.+.++|..+ |. -.|-|.-.+..+. ...++...+..+.|.|++
T Consensus 93 tlvLlRiNrA--------At~V~WsP~enkFAVgS---ga--r~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV 159 (361)
T KOG1523|consen 93 TLVLLRINRA--------ATCVKWSPKENKFAVGS---GA--RLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV 159 (361)
T ss_pred ceeEEEeccc--------eeeEeecCcCceEEecc---Cc--cEEEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence 3456655532 23579999999998654 22 2344443333221 122445556779999999
Q ss_pred eEEEEEeCCCCCCceEEEEEcCCCCCC----cEEEe-----ee-cCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCC
Q 004368 248 ALVYITMDEILRPDKAWLHKLEADQSN----DICLY-----HE-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS 317 (758)
Q Consensus 248 ~l~y~~~~~~~~~~~v~~~~l~~~~~~----~~~v~-----~~-~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~ 317 (758)
.++-.+.|..-|-...|+..++...+. ....| +- ..+.+..++.|||+|..|.+...+. -+.+.|..
T Consensus 160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds---~v~~~da~ 236 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS---TVSFVDAA 236 (361)
T ss_pred eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC---ceEEeecC
Confidence 666665565555555666666544321 11112 11 2244556788999999998876543 35677766
Q ss_pred CCC
Q 004368 318 KPE 320 (758)
Q Consensus 318 ~~~ 320 (758)
++.
T Consensus 237 ~p~ 239 (361)
T KOG1523|consen 237 GPS 239 (361)
T ss_pred CCc
Confidence 543
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=85.06 E-value=57 Score=34.73 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=59.1
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCce-eec-ccc-------CcceeEEEecC----C--eEEEEEeCC--
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGK-PLV-------GVTASVEWAGN----E--ALVYITMDE-- 256 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~-~~~-~~~-------~~~~~~~wspD----g--~l~y~~~~~-- 256 (758)
.+++|.|||+. |...+.| .|++++. .|.. ... .+. ...-++++.|+ + .++|+..+.
T Consensus 5 ~~~a~~pdG~l--~v~e~~G----~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 5 RSMAFLPDGRL--LVAERSG----RIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp EEEEEETTSCE--EEEETTT----EEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred eEEEEeCCCcE--EEEeCCc----eEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 46789999976 4455566 5888883 4433 111 111 11345788885 4 344443311
Q ss_pred CCCCceEEEEEcCCCC---CCcEEEeee-cC----CceeeEEEEcCCCcEEEEEecCCc-----------ceEEEEEeCC
Q 004368 257 ILRPDKAWLHKLEADQ---SNDICLYHE-KD----DIYSLGLQASESKKFLFIASESKI-----------TRFVFYLDVS 317 (758)
Q Consensus 257 ~~~~~~v~~~~l~~~~---~~~~~v~~~-~~----~~~~~~~~~S~Dg~~l~~~s~~~~-----------~~~l~~~d~~ 317 (758)
......|.+..+..+. .....++.. +. ......+.+.||| +|+++..+.. ...|.+++.+
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d 156 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPD 156 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEeccc
Confidence 2223457766665431 112223322 21 2233457899999 7888775422 2368888876
Q ss_pred C
Q 004368 318 K 318 (758)
Q Consensus 318 ~ 318 (758)
+
T Consensus 157 G 157 (331)
T PF07995_consen 157 G 157 (331)
T ss_dssp S
T ss_pred C
Confidence 5
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.63 E-value=58 Score=36.34 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=22.5
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG 227 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g 227 (758)
..+.+||||+||.- .|.-..+|.++|++.=
T Consensus 55 t~ik~s~DGqY~lA----tG~YKP~ikvydlanL 84 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLA----TGTYKPQIKVYDLANL 84 (703)
T ss_pred ceeEecCCCcEEEE----ecccCCceEEEEcccc
Confidence 46789999999863 2444578999998763
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=84.33 E-value=7.9 Score=41.93 Aligned_cols=128 Identities=15% Similarity=0.169 Sum_probs=55.5
Q ss_pred EEEEEEECCCCceeec-ccc--C-cceeEEEe--cCCeEEEEEeCCCCCCceEEEEEc-CCCC--CCcEEEeee-c---C
Q 004368 217 YTVYVIDIETGTPVGK-PLV--G-VTASVEWA--GNEALVYITMDEILRPDKAWLHKL-EADQ--SNDICLYHE-K---D 283 (758)
Q Consensus 217 ~~l~v~dl~~g~~~~~-~~~--~-~~~~~~ws--pDg~l~y~~~~~~~~~~~v~~~~l-~~~~--~~~~~v~~~-~---~ 283 (758)
.+|++||+.+.+.++. .+. + ..-.+.|. |+..--|+... ....||+.-- ..+. .+.+.-... + .
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a---Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA---LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE-----EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe---ccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 6899999999988763 332 1 22235555 44434444321 1223443322 1110 011111110 0 0
Q ss_pred ------------CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-ccc------------------c-
Q 004368 284 ------------DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVV------------------G- 331 (758)
Q Consensus 284 ------------~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~------------------~- 331 (758)
+....++..|-|.|+|+++..- ..+|..+|+.++..++.+-. ... +
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~--~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL--HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETT--TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEccc--CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 2344578899999999986543 34677788877653333211 000 1
Q ss_pred eeeEEeecCCEEEEEEcC
Q 004368 332 VDTAASHRGNHFFITRRS 349 (758)
Q Consensus 332 ~~~~~s~dg~~l~~~s~~ 349 (758)
.....|-||++||+.+..
T Consensus 377 qMvqlS~DGkRlYvTnSL 394 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVTNSL 394 (461)
T ss_dssp --EEE-TTSSEEEEE---
T ss_pred CeEEEccCCeEEEEEeec
Confidence 112478899999988653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.26 E-value=5.9 Score=41.40 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=72.6
Q ss_pred eecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceee----ccccCcceeEEEecCCeEEEEEe
Q 004368 179 LDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG----KPLVGVTASVEWAGNEALVYITM 254 (758)
Q Consensus 179 lD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~----~~~~~~~~~~~wspDg~l~y~~~ 254 (758)
+|.+-+.. | ..++..++|||..+-+.++.+..| .|.|||+..+.-.. .....-+.-+.|+.+-.++....
T Consensus 248 vd~~Pf~g-H-~~SVEDLqWSptE~~vfaScS~Dg----sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~ 321 (440)
T KOG0302|consen 248 VDQRPFTG-H-TKSVEDLQWSPTEDGVFASCSCDG----SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGG 321 (440)
T ss_pred ecCccccc-c-ccchhhhccCCccCceEEeeecCc----eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecC
Confidence 35555542 2 357889999999999988888777 49999998874322 11122245578976654333333
Q ss_pred CCCCCCceEEEEEcCCCCC-CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeC
Q 004368 255 DEILRPDKAWLHKLEADQS-NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV 316 (758)
Q Consensus 255 ~~~~~~~~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~ 316 (758)
|++ - +.+++|..-+. ..+..|.-....+ .++.|+|....++..+.....--||-+.+
T Consensus 322 DdG--t--~~iwDLR~~~~~~pVA~fk~Hk~pI-tsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 322 DDG--T--LSIWDLRQFKSGQPVATFKYHKAPI-TSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CCc--e--EEEEEhhhccCCCcceeEEeccCCe-eEEEeccccCceEEeccCCCcEEEEEeec
Confidence 322 1 23333332211 2444555443333 37899997777666555554444454433
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.94 E-value=66 Score=34.69 Aligned_cols=151 Identities=11% Similarity=0.109 Sum_probs=83.9
Q ss_pred EEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCC
Q 004368 241 VEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP 319 (758)
Q Consensus 241 ~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~ 319 (758)
++|.-.- .+++...- ...|.++++.++.. ...++..... .-.+.|.|-.-.++++..-. ..+-+.|+...
T Consensus 249 Ls~n~~~~nVLaSgsa----D~TV~lWD~~~g~p--~~s~~~~~k~-Vq~l~wh~~~p~~LLsGs~D--~~V~l~D~R~~ 319 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSA----DKTVKLWDVDTGKP--KSSITHHGKK-VQTLEWHPYEPSVLLSGSYD--GTVALKDCRDP 319 (463)
T ss_pred HHhccccceeEEecCC----CceEEEEEcCCCCc--ceehhhcCCc-eeEEEecCCCceEEEecccc--ceEEeeeccCc
Confidence 5565554 45555432 23588889988854 3344322222 22567888665555544332 33556666532
Q ss_pred CceEEeeccccceee-EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCccee-eecCCCCceeeeEEEeC--CEEEEEEE
Q 004368 320 EELRVLTPRVVGVDT-AASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFI--DHLAVYER 395 (758)
Q Consensus 320 ~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~--~~l~~~~~ 395 (758)
...-.-.+....++- .|.|.....++.+..+ +.|+.+|+..++...| +..++. .+.+++... ..++.+..
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd----G~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD----GTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCC----ceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeecc
Confidence 200011111223443 3888888777777655 5799999988777777 555554 456666654 34544544
Q ss_pred eCCeeEEEEEEcC
Q 004368 396 EGGLQKITTYRLP 408 (758)
Q Consensus 396 ~~g~~~l~v~~l~ 408 (758)
.++ .+.+|+++
T Consensus 394 ~d~--~Vklw~~~ 404 (463)
T KOG0270|consen 394 TDK--VVKLWKFD 404 (463)
T ss_pred ccc--eEEEEeec
Confidence 444 46677776
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.93 E-value=41 Score=34.68 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=44.7
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+++.|.||. |.++. | ...|+.|||-.|+.-.. .+......+.|+|.| +|+....+ .|-.+.++
T Consensus 129 ~Vt~lsiHPS~KL-ALsVg--~--D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~------~i~i~q~d 197 (362)
T KOG0294|consen 129 QVTDLSIHPSGKL-ALSVG--G--DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN------KIDIYQLD 197 (362)
T ss_pred ccceeEecCCCce-EEEEc--C--CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc------EEEEEecc
Confidence 3788899999985 55553 3 24688999988875432 555555569999999 55544432 25455555
Q ss_pred C
Q 004368 270 A 270 (758)
Q Consensus 270 ~ 270 (758)
.
T Consensus 198 ~ 198 (362)
T KOG0294|consen 198 N 198 (362)
T ss_pred c
Confidence 4
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=83.61 E-value=13 Score=30.90 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=41.4
Q ss_pred EEEcCCCcEEEEEecC---------------CcceEEEEEeCCCCCceEEeeccccce-eeEEeecCCEEEEEEcCCCCC
Q 004368 290 LQASESKKFLFIASES---------------KITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSDELF 353 (758)
Q Consensus 290 ~~~S~Dg~~l~~~s~~---------------~~~~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~ 353 (758)
+...+++..|+|+..+ ..+.+|+.+|..+++ .+.|..+..-- ...+++|++.+++.-..
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~-~~vl~~~L~fpNGVals~d~~~vlv~Et~---- 77 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE-TTVLLDGLYFPNGVALSPDESFVLVAETG---- 77 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE-EEEEEEEESSEEEEEE-TTSSEEEEEEGG----
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe-EEEehhCCCccCeEEEcCCCCEEEEEecc----
Confidence 4556675566666543 234689999999986 66665442211 22389999988777543
Q ss_pred CcEEEEEeCCC
Q 004368 354 NSELLACPVDN 364 (758)
Q Consensus 354 ~~~L~~~~~~~ 364 (758)
..+|.+.-+.+
T Consensus 78 ~~Ri~rywl~G 88 (89)
T PF03088_consen 78 RYRILRYWLKG 88 (89)
T ss_dssp GTEEEEEESSS
T ss_pred CceEEEEEEeC
Confidence 47888887765
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PLN02633 palmitoyl protein thioesterase family protein | Back alignment and domain information |
|---|
Probab=83.54 E-value=10 Score=39.36 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=58.1
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHc-CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 592 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 592 (758)
.+.|+||+ ||-......++.....+.+.+. |.-+.++.+- .+ .-..| -.+..+.+..+.+.|.+....
T Consensus 24 ~~~P~Viw-HG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~ig-~~-~~~s~--------~~~~~~Qve~vce~l~~~~~l 92 (314)
T PLN02633 24 VSVPFIML-HGIGTQCSDATNANFTQLLTNLSGSPGFCLEIG-NG-VGDSW--------LMPLTQQAEIACEKVKQMKEL 92 (314)
T ss_pred CCCCeEEe-cCCCcccCCchHHHHHHHHHhCCCCceEEEEEC-CC-ccccc--------eeCHHHHHHHHHHHHhhchhh
Confidence 45787775 8854444444333333444332 6666666552 22 11111 123335555566666654433
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhCCC--ceeEEEEc
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMRPD--LFKAAVAA 626 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~p~--~f~a~v~~ 626 (758)
++-+-++|+|.||.++=+++.++|+ ..+-.|..
T Consensus 93 -~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISl 127 (314)
T PLN02633 93 -SQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISL 127 (314)
T ss_pred -hCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEe
Confidence 3569999999999999999998886 25555543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.31 E-value=8.3 Score=46.02 Aligned_cols=199 Identities=10% Similarity=0.032 Sum_probs=104.2
Q ss_pred EEeeEEECCCCCE----EEEEEeCCCCeEEEEEEEECCC---Cceee-c----cccCcceeEEEecCC-eEEEEEeCCCC
Q 004368 192 SVGCFQVSPDNKL----VAYAEDTKGDEIYTVYVIDIET---GTPVG-K----PLVGVTASVEWAGNE-ALVYITMDEIL 258 (758)
Q Consensus 192 ~i~~~~~SPDG~~----lAy~~~~~G~e~~~l~v~dl~~---g~~~~-~----~~~~~~~~~~wspDg-~l~y~~~~~~~ 258 (758)
......|++-|.. || +|.|...|-++|.+. +.... + .-.+.+.++.|.+.. -++-...++
T Consensus 66 rF~kL~W~~~g~~~~GlIa-----GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~-- 138 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIA-----GGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD-- 138 (1049)
T ss_pred cceeeeecccCCCccceee-----ccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC--
Confidence 4456689888887 55 555666788888764 22211 1 113335558899987 354444333
Q ss_pred CCceEEEEEcCCCCCCcEEEeeec-CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce---ee
Q 004368 259 RPDKAWLHKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV---DT 334 (758)
Q Consensus 259 ~~~~v~~~~l~~~~~~~~~v~~~~-~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~---~~ 334 (758)
.+++++++...+. ...+... .+.....++|...-.+|+.+.+..+.. .++|+...+....+....... ..
T Consensus 139 --geI~iWDlnn~~t--P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~--~iWDlr~~~pii~ls~~~~~~~~S~l 212 (1049)
T KOG0307|consen 139 --GEILIWDLNKPET--PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRA--VIWDLRKKKPIIKLSDTPGRMHCSVL 212 (1049)
T ss_pred --CcEEEeccCCcCC--CCCCCCCCCcccceEeccchhhhHHhhccCCCCCc--eeccccCCCcccccccCCCccceeee
Confidence 2589999875421 1111111 112223466776666666555544444 445665544233333222212 23
Q ss_pred EEeecCC-EEEEEEcCCCCCCcEEEEEeCCCCCccee-eecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCC
Q 004368 335 AASHRGN-HFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 335 ~~s~dg~-~l~~~s~~~~~~~~~L~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
.|.|++. .++..++++..+. |-..|+........ +..+.. -+..++|. +.++++..-.++. +..|+..+
T Consensus 213 ~WhP~~aTql~~As~dd~~Pv--iqlWDlR~assP~k~~~~H~~--GilslsWc~~D~~lllSsgkD~~--ii~wN~~t 285 (1049)
T KOG0307|consen 213 AWHPDHATQLLVASGDDSAPV--IQLWDLRFASSPLKILEGHQR--GILSLSWCPQDPRLLLSSGKDNR--IICWNPNT 285 (1049)
T ss_pred eeCCCCceeeeeecCCCCCce--eEeecccccCCchhhhccccc--ceeeeccCCCCchhhhcccCCCC--eeEecCCC
Confidence 4888875 4566666654444 34445443222222 323333 34466665 4478878777765 55666553
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.18 E-value=74 Score=34.52 Aligned_cols=140 Identities=13% Similarity=0.124 Sum_probs=81.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc--cC-cceeEEEecCC-eEEEEEeCCCCCCceEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL--VG-VTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~--~~-~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~ 266 (758)
.++.+.+||...--.|+.+.+| +|+..|++++..... .. .. .++++.++.+. .++|... -+ ...++-+
T Consensus 236 ~Vs~l~F~P~n~s~i~ssSyDG----tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~-~G--~f~~iD~ 308 (498)
T KOG4328|consen 236 PVSGLKFSPANTSQIYSSSYDG----TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN-VG--NFNVIDL 308 (498)
T ss_pred cccceEecCCChhheeeeccCc----eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec-cc--ceEEEEe
Confidence 4788899998887788888777 699999988754332 22 22 25667787777 5555432 11 3445555
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ce-EEeeccccce-eeEEeecCCE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-EL-RVLTPRVVGV-DTAASHRGNH 342 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~-~~l~~~~~~~-~~~~s~dg~~ 342 (758)
+.+...-+...+... -..++++.|-..+++.+++...+-.||-+.--.++ .+ .-..+....+ ..+|||.|..
T Consensus 309 R~~~s~~~~~~lh~k----KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt 383 (498)
T KOG4328|consen 309 RTDGSEYENLRLHKK----KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT 383 (498)
T ss_pred ecCCccchhhhhhhc----ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc
Confidence 554332222222211 22367788988888887777666666643221222 11 1112222223 3359999998
|
|
| >PLN02606 palmitoyl-protein thioesterase | Back alignment and domain information |
|---|
Probab=82.97 E-value=10 Score=39.29 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=56.7
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHH-cCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 592 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 592 (758)
.+.|+|| .||-......+++......+.+ .|.-+..+.. |.+ .-..| -.+..+.+..+.+.|.+....
T Consensus 25 ~~~PvVi-wHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~i-g~~-~~~s~--------~~~~~~Qv~~vce~l~~~~~L 93 (306)
T PLN02606 25 LSVPFVL-FHGFGGECSNGKVSNLTQFLINHSGYPGTCVEI-GNG-VQDSL--------FMPLRQQASIACEKIKQMKEL 93 (306)
T ss_pred CCCCEEE-ECCCCcccCCchHHHHHHHHHhCCCCCeEEEEE-CCC-ccccc--------ccCHHHHHHHHHHHHhcchhh
Confidence 4577666 5995444444445444444432 3665555542 221 10011 122335555566666664433
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhCCC--ceeEEEE
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMRPD--LFKAAVA 625 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~p~--~f~a~v~ 625 (758)
++-+-++|+|.||.+.=+++.++|+ -.+-.|.
T Consensus 94 -~~G~naIGfSQGglflRa~ierc~~~p~V~nlIS 127 (306)
T PLN02606 94 -SEGYNIVAESQGNLVARGLIEFCDNAPPVINYVS 127 (306)
T ss_pred -cCceEEEEEcchhHHHHHHHHHCCCCCCcceEEE
Confidence 3569999999999999999998876 2444443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.69 E-value=29 Score=34.22 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=60.9
Q ss_pred EeeEEECCCCCEEEEEEeCCCCe----EEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceE--E
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDE----IYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKA--W 264 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e----~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v--~ 264 (758)
+..-.++|||++.+=+....|.+ ...||.+-+ ++++... .--++..+++|+-|- .+||+-. .++.| |
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs----ln~~V~a~ 185 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYIDS----LNYEVDAY 185 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEEcc----CceEEeee
Confidence 44558899999966555554432 135666544 3443321 112345679999887 6666632 23455 5
Q ss_pred EEEcCCCCC-CcEEEeeecC-CceeeEEEEcCCCcE------EEEEecCCcceEEEEEeCCCCC
Q 004368 265 LHKLEADQS-NDICLYHEKD-DIYSLGLQASESKKF------LFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 265 ~~~l~~~~~-~~~~v~~~~~-~~~~~~~~~S~Dg~~------l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
-++..++.. ....+|.-.. ..+. +.-|||-. |++..- ....|+.+|+.+++
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e---~~~PDGm~ID~eG~L~Va~~--ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFE---SLEPDGMTIDTEGNLYVATF--NGGTVQKVDPTTGK 244 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcC---CCCCCcceEccCCcEEEEEe--cCcEEEEECCCCCc
Confidence 555666542 2233443211 1110 11233322 333322 34568899998887
|
|
| >COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.03 E-value=3.5 Score=45.24 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=64.0
Q ss_pred CCCCEEEEecCCCccCCCCCC-------------Ch----HHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChH
Q 004368 514 GSDPLLLYGYGSYEICNDPAF-------------NS----SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF 576 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~-------------~~----~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~ 576 (758)
.+.|++++.-||||.+....+ .+ .--.|.+++= ++.+|.+-+.||...-..+ +.......-
T Consensus 99 ~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~ad-LvFiDqPvGTGfS~a~~~e-~~~d~~~~~ 176 (498)
T COG2939 99 ANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDFAD-LVFIDQPVGTGFSRALGDE-KKKDFEGAG 176 (498)
T ss_pred CCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccCCc-eEEEecCcccCcccccccc-cccchhccc
Confidence 568999999999987643321 11 1235666543 5567766666665541111 111111222
Q ss_pred hHHHHHHHH----HHHcCCCCCCcEEEEEeChhHHHH----HHHHhh--CCC---ceeEEEEcCC-ccchh
Q 004368 577 TDFIACAEY----LIKNCYCTKEKLCIEGRSAGGLLI----GAVLNM--RPD---LFKAAVAAVP-FVDVL 633 (758)
Q Consensus 577 ~D~~~~~~~----l~~~~~~d~~~i~i~G~S~GG~l~----~~~~~~--~p~---~f~a~v~~~~-~~d~~ 633 (758)
+|+....+. +.+..- .-.+..|+|.||||+-+ ..+..+ .++ ++..+...++ .+|.+
T Consensus 177 ~D~~~~~~~f~~~fp~~~r-~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssvligng~~t~Pl 246 (498)
T COG2939 177 KDVYSFLRLFFDKFPHYAR-LLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVLIGNGLWTDPL 246 (498)
T ss_pred hhHHHHHHHHHHHHHHHhh-hcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeeeeecCCcccChh
Confidence 455554443 333321 12589999999999944 333343 122 3566666666 55543
|
|
| >PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria | Back alignment and domain information |
|---|
Probab=81.73 E-value=3.8 Score=39.06 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCC
Q 004368 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP 617 (758)
Q Consensus 578 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p 617 (758)
++.+.++-|.... ....++.++|||||..+++.++.+.+
T Consensus 93 ~L~~f~~gl~a~~-~~~~~~tv~GHSYGS~v~G~A~~~~~ 131 (177)
T PF06259_consen 93 RLARFLDGLRATH-GPDAHLTVVGHSYGSTVVGLAAQQGG 131 (177)
T ss_pred HHHHHHHHhhhhc-CCCCCEEEEEecchhHHHHHHhhhCC
Confidence 3333444443333 45679999999999999999988733
|
Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=81.28 E-value=1.1e+02 Score=35.15 Aligned_cols=157 Identities=9% Similarity=-0.103 Sum_probs=83.1
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC-cceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
..++.+|+||+.+|+... . ..+++....+ .... ...+ ....+.|.++|.++ +..+.. +..+.... +++
T Consensus 336 ~~s~avS~dg~~~A~v~~-~----~~l~vg~~~~-~~~~-~~~~~~Lt~PS~d~~g~vW-tv~~g~--~~~l~~~~-~~G 404 (557)
T PRK13615 336 ADAATLSADGRQAAVRNA-S----GVWSVGDGDR-DAVL-LDTRPGLVAPSLDAQGYVW-STPASD--PRGLVAWG-PDG 404 (557)
T ss_pred cccceEcCCCceEEEEcC-C----ceEEEecCCC-ccee-eccCCccccCcCcCCCCEE-EEeCCC--ceEEEEec-CCC
Confidence 367899999999999943 1 2677776552 2222 1222 24568898888444 433332 22233322 122
Q ss_pred CCCcEEE-eeecCCceeeEEEEcCCCcEEEEEecCCcceEEEE--EeCCCCCceEEe-ec-c-----ccc-eeeEEeecC
Q 004368 272 QSNDICL-YHEKDDIYSLGLQASESKKFLFIASESKITRFVFY--LDVSKPEELRVL-TP-R-----VVG-VDTAASHRG 340 (758)
Q Consensus 272 ~~~~~~v-~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~--~d~~~~~~~~~l-~~-~-----~~~-~~~~~s~dg 340 (758)
+...+ .+-....-...+..|+||-.+++.....+..+|++ +--.++. ++.| +. . ... ....|..++
T Consensus 405 --~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~-P~~L~~~p~~l~~~l~~v~sl~W~~~~ 481 (557)
T PRK13615 405 --VGHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGV-PTSLTTTPLELLASPGTPLDATWVDEL 481 (557)
T ss_pred --ceEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCc-ceEeeeccEEcccCcCcceeeEEcCCC
Confidence 11111 11111223446789999999988776555555665 2223332 3333 21 1 111 123376655
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCCCC
Q 004368 341 NHFFITRRSDELFNSELLACPVDNT 365 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~~~ 365 (758)
. |++++... ..+..++.+.+.++
T Consensus 482 ~-laVl~~~~-~~~~~v~~v~v~g~ 504 (557)
T PRK13615 482 D-VATLTLAP-DGERQVELHQVGGP 504 (557)
T ss_pred E-EEEEeccC-CCCceEEEEECCCc
Confidence 4 77776443 24566888888764
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=81.18 E-value=14 Score=38.26 Aligned_cols=176 Identities=16% Similarity=0.186 Sum_probs=84.3
Q ss_pred CCCeEEEEEEEECCCCceeeccccCc--ceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeE
Q 004368 212 KGDEIYTVYVIDIETGTPVGKPLVGV--TASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLG 289 (758)
Q Consensus 212 ~G~e~~~l~v~dl~~g~~~~~~~~~~--~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~ 289 (758)
.|+...+|.|||+.+|+.+..-+..+ .-.+.|+. |.++-.+. ++...||...-.++.. -..++-+.... +.
T Consensus 252 sGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n-g~mvtcSk---DrsiaVWdm~sps~it-~rrVLvGHrAa--VN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN-GYMVTCSK---DRSIAVWDMASPTDIT-LRRVLVGHRAA--VN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC-CEEEEecC---CceeEEEeccCchHHH-HHHHHhhhhhh--ee
Confidence 46667899999999999886434333 33466743 33332222 2334455443222110 00111121111 11
Q ss_pred EEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcce
Q 004368 290 LQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETT 369 (758)
Q Consensus 290 ~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~ 369 (758)
+ ..-|.|+|+-.+++ .+ |-+++..+.+-.+.+.....|+... .-.++|++....+ ..|-..|++. +.--
T Consensus 325 v-Vdfd~kyIVsASgD-RT--ikvW~~st~efvRtl~gHkRGIACl--QYr~rlvVSGSSD----ntIRlwdi~~-G~cL 393 (499)
T KOG0281|consen 325 V-VDFDDKYIVSASGD-RT--IKVWSTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSD----NTIRLWDIEC-GACL 393 (499)
T ss_pred e-eccccceEEEecCC-ce--EEEEeccceeeehhhhcccccceeh--hccCeEEEecCCC----ceEEEEeccc-cHHH
Confidence 1 23366766543333 23 4455666665234455555555432 1133455443333 2355556654 2222
Q ss_pred eeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 370 VLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 370 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
.+....++ .+.-+.++.++++ ...-+|. +.||++..
T Consensus 394 RvLeGHEe-LvRciRFd~krIV-SGaYDGk--ikvWdl~a 429 (499)
T KOG0281|consen 394 RVLEGHEE-LVRCIRFDNKRIV-SGAYDGK--IKVWDLQA 429 (499)
T ss_pred HHHhchHH-hhhheeecCceee-eccccce--EEEEeccc
Confidence 23322222 3455666666665 4445665 67888874
|
|
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.83 E-value=1.6 Score=49.96 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHcC----CCC---CCcEEEEEeChhHHHHHHHHhhCCCceeEE
Q 004368 577 TDFIACAEYLIKNC----YCT---KEKLCIEGRSAGGLLIGAVLNMRPDLFKAA 623 (758)
Q Consensus 577 ~D~~~~~~~l~~~~----~~d---~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~ 623 (758)
+=+.+||.++.+.. --+ |.-|+++||||||.++-++++. |...+..
T Consensus 157 EYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl-kn~~~~s 209 (973)
T KOG3724|consen 157 EYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL-KNEVQGS 209 (973)
T ss_pred HHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh-hhhccch
Confidence 33566777765531 122 6779999999999998888875 5444443
|
|
| >PLN02454 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=80.08 E-value=2.8 Score=45.36 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=29.8
Q ss_pred hHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHh
Q 004368 575 TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN 614 (758)
Q Consensus 575 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 614 (758)
..+++.+.++.|+++.--..-.|.++|||+||.||..++.
T Consensus 208 ~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~ 247 (414)
T PLN02454 208 ARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAF 247 (414)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHH
Confidence 3467888888888764322235999999999999877764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 758 | ||||
| 2xe4_A | 751 | Structure Of Oligopeptidase B From Leishmania Major | 1e-144 | ||
| 3iun_A | 693 | Appep_d622n Opened State Length = 693 | 6e-63 | ||
| 3mun_A | 693 | Appep_pepclose Closed State Length = 693 | 1e-62 | ||
| 3ivm_A | 693 | Appep_wt+pp Closed State Length = 693 | 5e-62 | ||
| 3iuj_A | 693 | Appep_wt2 Opened State Length = 693 | 6e-62 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 4e-56 | ||
| 1yr2_A | 741 | Structural And Mechanistic Analysis Of Two Prolyl E | 1e-55 | ||
| 3ddu_A | 709 | Prolyl Oligopeptidase With Gsk552 Length = 709 | 6e-42 | ||
| 1qfm_A | 710 | Prolyl Oligopeptidase From Porcine Muscle Length = | 2e-41 | ||
| 1qfs_A | 710 | Prolyl Oligopeptidase From Porcine Muscle With Cova | 3e-41 | ||
| 1vz2_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y73c/v427 | 5e-41 | ||
| 1vz3_A | 710 | Prolyl Oligopeptidase From Porcine Brain, T597c Mut | 5e-41 | ||
| 1e8m_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant, C | 6e-41 | ||
| 1h2x_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y473f Mut | 8e-41 | ||
| 1e5t_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant Le | 9e-41 | ||
| 1o6g_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641n Mut | 9e-41 | ||
| 1o6f_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641a Mut | 2e-40 | ||
| 4ax4_A | 710 | Prolyl Oligopeptidase From Porcine Brain, H680a Mut | 4e-40 | ||
| 4hvt_A | 711 | Structure Of A Post-Proline Cleaving Enzyme From Ri | 2e-35 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 5e-04 | ||
| 3o4h_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 5e-04 | ||
| 1ve6_A | 582 | Crystal Structure Of An Acylpeptide HydrolaseESTERA | 5e-04 | ||
| 2qzp_A | 562 | Crystal Structure Of Mutation Of An Acylptide Hydro | 6e-04 |
| >pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major Length = 751 | Back alignment and structure |
|
| >pdb|3IUN|A Chain A, Appep_d622n Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3MUN|A Chain A, Appep_pepclose Closed State Length = 693 | Back alignment and structure |
|
| >pdb|3IVM|A Chain A, Appep_wt+pp Closed State Length = 693 | Back alignment and structure |
|
| >pdb|3IUJ|A Chain A, Appep_wt2 Opened State Length = 693 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 741 | Back alignment and structure |
|
| >pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552 Length = 709 | Back alignment and structure |
|
| >pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle Length = 710 | Back alignment and structure |
|
| >pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently Bound Inhibitor Z-Pro-Prolinal Length = 710 | Back alignment and structure |
|
| >pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant, Complexed With Inhibitor Length = 710 | Back alignment and structure |
|
| >pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant Length = 710 | Back alignment and structure |
|
| >pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From Rickettsia Typhi Length = 711 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM Aeropyrum Pernix K1 Length = 582 | Back alignment and structure |
|
| >pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide HydrolaseESTERASE FROM AEROPYRUM PERNIX K1 Length = 562 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 758 | |||
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 0.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 0.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 0.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 0.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 0.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 3e-29 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 5e-26 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 5e-13 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 2e-12 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 1e-11 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 1e-10 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 8e-10 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 9e-10 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 3e-08 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 4e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-05 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 7e-08 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 1e-07 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 3e-07 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 5e-07 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 7e-07 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 8e-07 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 5e-05 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 4e-04 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 8e-04 |
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Length = 751 | Back alignment and structure |
|---|
Score = 950 bits (2458), Expect = 0.0
Identities = 291/757 (38%), Positives = 417/757 (55%), Gaps = 42/757 (5%)
Query: 27 SSSSLSSSDSKTSTATMMSQSKLPSPPVAKKVEHKMEL--------------FGDVRVDN 72
SS + +S +++ + PP+A K H++ L R D
Sbjct: 11 SSGLVPRGSHMSSDSSVAAS---AQPPIAAKKPHRVTLGYVEGEDRGPNPMNPPRYREDP 67
Query: 73 YYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGS 132
Y+W+RDD R DP V+ +L +E YF++ + ++ D+++AE I ++D+SAP+ G
Sbjct: 68 YFWMRDDDRKDPAVIEHLNKEKVYFQARSADIAQLRDDIYAEHISHINEDDMSAPYVYGK 127
Query: 133 YYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYS 192
Y YYTR ++GK Y +CR D E +I+D N AEG+ F
Sbjct: 128 YRYYTREVKGKPYKIYCRVFTDK------------EPGDVAAEEVIIDVNQVAEGKAFCD 175
Query: 193 VGCFQ-VSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGKPLVGVTASVEWAG-NEAL 249
V + P++ LVA++ D G+E+YT+ I + + G + W + +L
Sbjct: 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSL 235
Query: 250 VYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITR 309
Y+T DE LR +K W H + QS D+CLY E + ++S + + L I S+S T
Sbjct: 236 FYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETA 295
Query: 310 FVFYLDVSKPE---ELRVLTPRVVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNT 365
V LD+ K L ++ PR GV H +H I N +LL P
Sbjct: 296 EVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP 355
Query: 366 SE-TTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE 424
S+ + VL+ H E V ++ I + ++L V R GL +I T + K+ G + V
Sbjct: 356 SDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVV 415
Query: 425 FIDPVYSIDPSESV---FSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDT 481
+P++++ ES + R YSSL TP + +D K+ V GGFD
Sbjct: 416 MEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGGFDA 475
Query: 482 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSL 541
NY ER++A+A D T+IP+ +VY K+L + P +LYGYGSY + DP F+ L
Sbjct: 476 ANYKVERRFATAPDQTKIPLSVVYHKDL-DMSQPQPCMLYGYGSYGLSMDPQFSIQHLPY 534
Query: 542 LDRGFIFAIAQIRGGGELGRQWYENG-KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIE 600
DRG IFAIA IRGG ELGR WYE G K+L K+NTF+DFIA AE+L+ T +L E
Sbjct: 535 CDRGMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACE 594
Query: 601 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFY 660
GRSAGGLL+GAVLNMRPDLFK A+A VPFVDV+TTM DP+IPLTT EWEEWG+P + ++Y
Sbjct: 595 GRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGEWEEWGNPNEYKYY 654
Query: 661 FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 720
YM SYSP+DNV+AQ YP+I+V GL+DPRV Y EPAK+V+KLRE KTD+N +L ++
Sbjct: 655 DYMLSYSPMDNVRAQEYPNIMVQCGLHDPRVAYWEPAKWVSKLRECKTDNNEILLNIDME 714
Query: 721 AGHFSKSGRFERLREAAFTYTFLMRALSMLPSVGSEQ 757
+GHFS R++ +E+A F+ + L + +
Sbjct: 715 SGHFSAKDRYKFWKESAIQQAFVCKHLKSTVRLLVRR 751
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Length = 693 | Back alignment and structure |
|---|
Score = 868 bits (2246), Expect = 0.0
Identities = 186/725 (25%), Positives = 319/725 (44%), Gaps = 59/725 (8%)
Query: 41 ATMMSQSKLPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESA 100
+ MS PV ++ E FG D Y WL DD PE A++K +N +
Sbjct: 1 GSHMSGKARLHYPVTRQGEQVDHYFGQAVADPYRWLEDDR--SPETEAWVKAQNAVTQDY 58
Query: 101 MSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPP 160
++ + +L APFR+G Y+Y+ + + R+
Sbjct: 59 LAQIP-YRAAIKEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQ--------- 108
Query: 161 SVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVY 220
+ P + LD N + G ++ S D +++AY+ G + ++
Sbjct: 109 ---------QEGKPAEVFLDPNTLSPD-GTTALDQLSFSRDGRILAYSLSLAGSDWREIH 158
Query: 221 VIDIETGTPVGKPLVGVTAS-VEWAGNEALVYITMDE--------ILRPDKAWLHKLEAD 271
++D+E+ P+ PL V S + W GNE Y + D+ K + H+L
Sbjct: 159 LMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTA 218
Query: 272 QSNDICLYHEKDDIY--SLGLQASESKKFLFIASESKITRF-VFYLDVSKPE-ELRVLTP 327
Q +D ++ + +G +E +FL I++ + + ++ D+S+ L +
Sbjct: 219 QEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG 278
Query: 328 RVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSET--TVLIPHRESVKLQDIQL 385
+ + ++G+ ++ D N L+ N LIP R+ V +
Sbjct: 279 DLDADVSLVDNKGSTLYLLTNRDA-PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS 335
Query: 386 FIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDP-VYSIDPSESVFSSRIL 444
+L ++ + +G + E P + S+ L
Sbjct: 336 GSGYLFAEYMVDATARVEQF----------DYEGKRVREVALPGLGSVSGFNGKHDDPAL 385
Query: 445 RFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIV 504
F + + PP++Y ++ G L + F +Y +E+++ + DGT++P+ I
Sbjct: 386 YFGFENYAQPPTLYRFEPKSGAISLYRASAA--PFKPEDYVSEQRFYQSKDGTRVPLIIS 443
Query: 505 YRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 564
YRK L KLDGS+P +LYGYG +++ P+F+ S + LD G ++A+A +RGGGE G+ W+
Sbjct: 444 YRKGL-KLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWH 502
Query: 565 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAV 624
G K+N F DFIA AEYL Y ++L I G S GGLL+GAV+ RPDL +
Sbjct: 503 LAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMR--- 559
Query: 625 AAVPFVDVLTTMLDPTIPLTTAEWEEWGDPW-KEEFYFYMKSYSPVDNVK-AQNYPHILV 682
A+P V VL + T T ++G E + Y+K YSP+ NV+ +YP +V
Sbjct: 560 VALPAVGVLDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVRPGVSYPSTMV 619
Query: 683 TAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTF 742
T +D RV+ + KF A L+ + L + E AGH + + + + ++A Y F
Sbjct: 620 TTADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAF 679
Query: 743 LMRAL 747
+ +
Sbjct: 680 TLYEM 684
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Length = 695 | Back alignment and structure |
|---|
Score = 849 bits (2195), Expect = 0.0
Identities = 179/723 (24%), Positives = 312/723 (43%), Gaps = 53/723 (7%)
Query: 51 SPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDN 110
S P + + L G D Y WL D+ PEV ++ +N + A++ +
Sbjct: 2 SYPATRAEQVVDTLHGVQVADPYRWLEDEK--APEVQTWMTAQNAHAREALAKFP-GREA 58
Query: 111 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 170
+ A K + VS P R+ ++Y RT + KE R
Sbjct: 59 LAARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWR-----------------QG 101
Query: 171 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 230
++ E ++LD N ++ G S+G + VS D K VA+A+ + ++VID+++G
Sbjct: 102 ESGQEKVLLDPNGWSKD-GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS 160
Query: 231 GKPLVGVTA--SVEWA-GNEALVY--------ITMDEILRPDKAWLHKLEADQSNDICLY 279
++ + +W ++ Y I +DE H L + S D ++
Sbjct: 161 KVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH 220
Query: 280 HEKDD-IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASH 338
D L S K+LF+ + Y ++ R+L + VG
Sbjct: 221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLL-VKGVGAKYEVHA 279
Query: 339 RGNHFFITRRSDELFNSELLACPVDNTSET--TVLIPHRESVKLQDIQLFIDHLAVYERE 396
+ F++ + + + ++P S L + + HL++ +
Sbjct: 280 WKDRFYV-LTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLK 338
Query: 397 GGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPS 456
++ L G+P+++ V+ + + + ++S TP
Sbjct: 339 DATSEVRVATLK--GKPVRT------VQLPGVGAASNLMGL-EDLDDAYYVFTSFTTPRQ 389
Query: 457 VYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSD 516
+Y + G S L V + Y E+ + ++ DGT++P+ +V+RK+L K DG+
Sbjct: 390 IYKTSVSTGKSELWAKVDV--PMNPEQYQVEQVFYASKDGTKVPMFVVHRKDL-KRDGNA 446
Query: 517 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF 576
P LLYGYG + + + F SS L LD G ++A+A +RGGGE G+ W++ G+ KK+N F
Sbjct: 447 PTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVF 506
Query: 577 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM 636
DF A AEYL++ Y ++L I G S GGLL+GA + RP+L+ A V AVP +D++
Sbjct: 507 DDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYH 566
Query: 637 LDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMYSE 695
L + E+ P E + + +YSP +V+ YP +L+ A +D RV
Sbjct: 567 LFGSGRTWIPEYGTAEKP---EDFKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMH 623
Query: 696 PAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVGS 755
KFVA ++ + L + E AGH + + + Y+FL + L + + G
Sbjct: 624 ARKFVAAVQNSPGNPATALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVLDVQGAQGG 683
Query: 756 EQS 758
+
Sbjct: 684 VAA 686
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Length = 741 | Back alignment and structure |
|---|
Score = 836 bits (2162), Expect = 0.0
Identities = 186/761 (24%), Positives = 312/761 (40%), Gaps = 58/761 (7%)
Query: 8 KHTLLISTSGWLNLPRVICSSSSLSSSDSKTSTATMMSQSKLPSPPVAKKVEHKMELFGD 67
K+ L ++ + P + + + + + + M LP P + +V + FG+
Sbjct: 2 KNRLWLAMA----APLALATPVAFAQTPPTLAKDQAMPS--LPPYPASPQVPLVEDHFGE 55
Query: 68 VRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAP 127
D + WL D R+D +V A+++ ++ Y + + + +K I E P
Sbjct: 56 KVSDPWRWLEADVRTDAKVAAWVQAQSAYTAAYLKQLP-ERAALEKRMKALIDYERFGLP 114
Query: 128 FRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEG 187
R+G+ +Y+ Q R P ++LD N A+
Sbjct: 115 QRRGASVFYSWNSGLMNQSQLLVRP--------------ADAPVGTKGRVLLDPNTWAKD 160
Query: 188 RGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTAS-VEWAGN 246
G ++ + S D +L+AY+ G + TV + + G P+ L V S + W GN
Sbjct: 161 -GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN 219
Query: 247 EALVY---------ITMDEILRPDKAWLHKLEADQSNDICLYHEKDD-IYSLGLQASESK 296
+AL+Y + WLH+L QS D ++ + G S
Sbjct: 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG 279
Query: 297 KFLFIASESKITRF--VFYLDVSKPE--ELRVLTPRVVGVDTAASHRGNHFFITRRSDEL 352
+++ I S V V+ + + L P + G+ + D
Sbjct: 280 RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWF-VSGDGA 338
Query: 353 FNSELLACPVDNTSE-TTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVG 411
+++ + ++ ++P + L+ + + + L ++ + L G
Sbjct: 339 PLKKIVRVDLSGSTPRFDTVVPESKDN-LESVGIAGNRLFASYIHDAKSQVLAFDLD--G 395
Query: 412 EPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKK 471
+P + V + S +SS P +V D + +
Sbjct: 396 KPAGA------VSLPGIGSASGLSGRPGDRH-AYLSFSSFTQPATVLALDPATAKTTPWE 448
Query: 472 IETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND 531
V FD ++ E+ + + DGT++P+ IV RK+ G P LLYGYG + +
Sbjct: 449 --PVHLTFDPADFRVEQVFYPSKDGTKVPMFIVRRKDA---KGPLPTLLYGYGGFNVALT 503
Query: 532 PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591
P F++ ++ +D G FA+A +RGGGE G W++ G+ KK+N F DFIA E+LI N
Sbjct: 504 PWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDKKQNVFDDFIAAGEWLIANGV 563
Query: 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW 651
+ L IEG S GGLLIGAV N RPDLF AA AV +D + +++
Sbjct: 564 TPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMD---MLRFDQFTAGRYWVDDY 620
Query: 652 GDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 710
G P KE + ++ YSP NV++ +YP ILVT D RV+ K+ A L+
Sbjct: 621 GYPEKEADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGP 680
Query: 711 NILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLP 751
L + E AGH S +++ E A FL + P
Sbjct: 681 KPHLIRIETRAGHGSGKPIDKQIEETADVQAFLAHFTGLTP 721
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Length = 710 | Back alignment and structure |
|---|
Score = 823 bits (2128), Expect = 0.0
Identities = 166/745 (22%), Positives = 294/745 (39%), Gaps = 77/745 (10%)
Query: 43 MMSQSKLPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMS 102
M+ P V + + G D Y WL D + A+++ +N +
Sbjct: 1 ML---SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPD--SEQTKAFVEAQNKITVPFLE 55
Query: 103 GTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSV 162
I + S F++G Y+Y G + +
Sbjct: 56 QCP-IRGLYKERMTELYDYPKYSCHFKKGKRYFYFYN-TGLQNQRVLYV----------- 102
Query: 163 HDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVI 222
+ LD N+ ++ G ++ + S D + AY G + T+ +
Sbjct: 103 -----QDSLEGEARVFLDPNILSDD-GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFM 156
Query: 223 DIETGTPVGKPLVGVT-ASVEWAG-NEALVYITMDE-----------ILRPDKAWLHKLE 269
++ + L V + + W + + Y + K + H L
Sbjct: 157 KVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLG 216
Query: 270 ADQSNDICLYHEKDD-IYSLGLQASESKKFLFIASESKITR--FVFYLDVSKPE-ELRVL 325
DQS DI D+ + G + S+ +++ ++ ++Y D+ + + +
Sbjct: 217 TDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276
Query: 326 TPRVVGVDT------AASHRGNHFFITRRSDELFNSELLACPVDNTSET--TVLIPHRES 377
V +D ++ G F N L+ + E+ VL+P E
Sbjct: 277 LKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-NYRLINIDFTDPEESKWKVLVPEHEK 335
Query: 378 VKLQDIQLFI-DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE-FIDPVYSIDPS 435
L+ + + L + + + L G ++ F V S+
Sbjct: 336 DVLEWVACVRSNFLVLCYLHDVKNTLQLH----------DLATGALLKIFPLEVGSVVGY 385
Query: 436 ESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKI-ETVLGGFDTNNYFTERKWASAS 494
+ + ++S +P +Y D+ + E + G D ++Y T + + +
Sbjct: 386 SGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSK 445
Query: 495 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQI 553
DGT+IP+ IV++K + KLDGS P LYGYG + I P ++ SRL + G + A+A I
Sbjct: 446 DGTKIPMFIVHKKGI-KLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANI 504
Query: 554 RGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVL 613
RGGGE G W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+
Sbjct: 505 RGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCA 564
Query: 614 NMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVK 673
N RPDLF +A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 565 NQRPDLFGCVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVK 621
Query: 674 AQ-----NYPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHF 724
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH
Sbjct: 622 LPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHG 681
Query: 725 SKSGRFERLREAAFTYTFLMRALSM 749
+ + + E + + F+ R L++
Sbjct: 682 AGKPTAKVIEEVSDMFAFIARCLNI 706
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 3e-29
Identities = 92/565 (16%), Positives = 167/565 (29%), Gaps = 73/565 (12%)
Query: 199 SPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGKPLVGVTASVEWAGNEALVYITMDEI 257
+++ + +KG E + ++ ++ G V + V T
Sbjct: 72 YGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGA-- 129
Query: 258 LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS 317
D+ L+ L+ ++ + + +F ++
Sbjct: 130 -TEDRVALYALDGGGLREL---ARLPGFGFVS--DIRGDLIAGLGFFGGGRVSLFTSNL- 182
Query: 318 KPEELRVLTPRVVGVDTAA-SHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE 376
LRV +A+ S + E + L+ + S + +P ++
Sbjct: 183 SSGGLRVFDSGEGSFSSASISPGMKVTAGLETARE---ARLVTVDPRDGSVEDLELPSKD 239
Query: 377 SVKLQDIQLFI------DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVY 430
+ + LAV R G + GE +++ QG
Sbjct: 240 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-----GERVEAPQG----------- 283
Query: 431 SIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFT-ERK 489
+ V L ++SL TPP + +E L +
Sbjct: 284 --NHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGE-----PLLEGGLPEDLRRSIAGSRLV 336
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
W + DG+++P V + P ++ +G + ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESG--RAPTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGF--H 391
Query: 550 IAQI--RGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGL 607
+ RG G +W D A A + ++ +L I G S GG
Sbjct: 392 VVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGL--ASELYIMGYSYGGY 449
Query: 608 LIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYS 667
+ L M+P LFKA VA VD + G E +S S
Sbjct: 450 MTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSR--EIM---RSRS 504
Query: 668 P---VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGH- 723
P VD +K P + + N R + + +L + AGH
Sbjct: 505 PINHVDRIKE---P-LALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIP---DAGHA 557
Query: 724 FSKSG-RFERLREAAFTYTFLMRAL 747
+ + L A FL
Sbjct: 558 INTMEDAVKILLPAV---FFLATQR 579
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 5e-26
Identities = 64/345 (18%), Positives = 112/345 (32%), Gaps = 33/345 (9%)
Query: 417 LQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVL 476
+ G+ V+ P + +V +R + +S RT V + D G
Sbjct: 323 PESGELVDAAGPWTEWAATLTVSGTRAV-GVAASPRTAYEVVELDTVTG-RARTIGARHT 380
Query: 477 GGFDTNNYFT-ERKWASASDGTQIPICIVYRKNLVKLDGSD----PLLLYGYGSYEICND 531
D Y + + +A DG +I +Y + G P ++ +G
Sbjct: 381 DPVDPAYYPEPQIRTFTAPDGREIH-AHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVP 439
Query: 532 PAFNSSRLSLLDRGFIFAIAQI--RGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 589
+ RG +A + G GR + E + D A A L +
Sbjct: 440 AVLDLDVAYFTSRGI--GVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEE 497
Query: 590 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 649
+ +L + G SAGG + L + D++ P +D+L T + +
Sbjct: 498 GTADRARLAVRGGSAGGWTAASSL-VSTDVYACGTVLYPVLDLLGWADGGTHDFESRYLD 556
Query: 650 EW-GDPWKE-EFYFYMKSYSP---VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLR 704
G + E Y + +P D V+ P L+ GL DP + +F+ +
Sbjct: 557 FLIGSFEEFPERY---RDRAPLTRADRVRV---P-FLLLQGLEDPVCPPEQCDRFLEAVA 609
Query: 705 EMKTDDNILLFKCELGAGH-FSKSG-RFERLREAAFTYTFLMRAL 747
L F+ G GH F + L + +
Sbjct: 610 GCGVPHAYLSFE---GEGHGFRRKETMVRALEA---ELSLYAQVF 648
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 5e-13
Identities = 44/243 (18%), Positives = 78/243 (32%), Gaps = 40/243 (16%)
Query: 517 PLLLY--GYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRG-GGELGRQWYENGKFLKK- 572
P ++ GY + + ++ G+ +RG +G L
Sbjct: 83 PAIVKYHGYNA----SYDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWM 138
Query: 573 ------------KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLF 620
+ + D + E + + ++ + G S GG L A +
Sbjct: 139 TKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-P 197
Query: 621 KAAVAAVPFVDVLTTMLDPTIPLTTAE----WEEWGDPWKEEFYFYMKSY-SP---VDNV 672
KAAVA P++ +D + E + G P E SY D V
Sbjct: 198 KAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRV 257
Query: 673 KAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGH-FSKSGRFE 731
K P +L++ GL D S L K + +++ GH + + + E
Sbjct: 258 KV---P-VLMSIGLIDKVTPPSTVFAAYNHLETKKE---LKVYR---YFGHEYIPAFQTE 307
Query: 732 RLR 734
+L
Sbjct: 308 KLA 310
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 43/260 (16%), Positives = 85/260 (32%), Gaps = 50/260 (19%)
Query: 517 PLLLY--GYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRG----------------GGE 558
P L+ GY S + +L+ + GF +RG G
Sbjct: 109 PALIRFHGYSSN-----SGDWNDKLNYVAAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGH 163
Query: 559 LGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD 618
+ R ++ + ++ F D A ++ ++++ + G S GG L A + P
Sbjct: 164 IIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR 223
Query: 619 LFKAAVAAVPFVDVLTTMLDPTIPLTT----AEWEEWGDPWKE---EFYFYMKSYSPV-- 669
+ V+ PF+ + D + ++ DP E E + +
Sbjct: 224 -VRKVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNL 282
Query: 670 -DNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG 728
+K +L+ GL D S A +++ +I ++ GH G
Sbjct: 283 AKRIKG----DVLMCVGLMDQVCPPST---VFAAYNNIQSKKDIKVYP---DYGHEPMRG 332
Query: 729 RFERLREAAFTYTFLMRALS 748
+ + F++ S
Sbjct: 333 FGDLAMQ------FMLELYS 346
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 27/208 (12%), Positives = 53/208 (25%), Gaps = 18/208 (8%)
Query: 541 LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIE 600
+ G I +RG + D A + L Y + +
Sbjct: 51 AVGLGCICMTFDLRGHEGYASMRQSVTRA----QNLDDIKAAYDQLASLPYVDAHSIAVV 106
Query: 601 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFY 660
G S GG L + RP + A + + D ++ +
Sbjct: 107 GLSYGGYLSALLTRERPVEWLALRSPALYKDAHWDQPKVSL------NADPDLMDYRRRA 160
Query: 661 FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 720
+ +L+ ND V + + ++ + ++ G
Sbjct: 161 LAPGDNLALAACAQYKGD-VLLVEAENDVIVPHPVMRNYADAFTNARSLTSRVIA----G 215
Query: 721 AGH-FSKSGRFERLREAAFTYTFLMRAL 747
A H S + A +L +
Sbjct: 216 ADHALSVKEHQQEYTRA--LIDWLTEMV 241
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 1e-10
Identities = 35/197 (17%), Positives = 62/197 (31%), Gaps = 14/197 (7%)
Query: 541 LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIE 600
+LDRG A G GE+ G + A + L K + + +
Sbjct: 175 VLDRGMATATFDGPGQGEMFEYKRIAG------DYEKYTSAVVDLLTKLEAIRNDAIGVL 228
Query: 601 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFY 660
GRS GG P A ++ F D+ L+ + + ++ D +E
Sbjct: 229 GRSLGGNYALKSAACEPR-LAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARL 287
Query: 661 FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 720
+ D + P + G++D V S + + N+++ K
Sbjct: 288 HVHAALETRDVLSQIACP-TYILHGVHD-EVPLSFVDTVLELVP--AEHLNLVVEK---D 340
Query: 721 AGHFSKSGRFERLREAA 737
H + E A
Sbjct: 341 GDHCCHNLGIRPRLEMA 357
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 8e-10
Identities = 37/180 (20%), Positives = 56/180 (31%), Gaps = 18/180 (10%)
Query: 573 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDV 632
+ FTD + E +E++ I G S GG + AV + KA + VPF+
Sbjct: 170 RRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKK-AKALLCDVPFLCH 228
Query: 633 LTTMLDPTIPLTTAEWEEW--GDPWKEEFYF----YMKSYSPVDNVKAQNYPHILVTAGL 686
+ AE + KEE F Y + K P L + GL
Sbjct: 229 FRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKI---P-ALFSVGL 284
Query: 687 NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 746
D S A I ++ H G F+ + + F +
Sbjct: 285 MDNICPPST---VFAAYNYYAGPKEIRIYP---YNNHEG-GGSFQAVEQVKFLKKLFEKG 337
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 9e-10
Identities = 32/210 (15%), Positives = 57/210 (27%), Gaps = 24/210 (11%)
Query: 518 LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGEL--GRQWYENGKFLK--KK 573
L L+G + +RGF+ GE ++ ++++ +
Sbjct: 28 LALHGLQGSKEHILALLPG----YAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYR 83
Query: 574 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVL 633
+ L + G S G + +L
Sbjct: 84 VALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLA--------- 134
Query: 634 TTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMY 693
+ P+ + + DP Y P +A +L G D V
Sbjct: 135 --FIGSGFPMKLPQGQVVEDPGVLALY----QAPPATRGEAYGGVPLLHLHGSRDHIVPL 188
Query: 694 SEPAKFVAKLREMKTDDNILLFKCELGAGH 723
+ K + LR + + F E GAGH
Sbjct: 189 ARMEKTLEALRPHYPEGRLARFVEE-GAGH 217
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 34/232 (14%), Positives = 66/232 (28%), Gaps = 23/232 (9%)
Query: 416 SLQGGKSVEFIDPVYSIDPSESVFSSRILRF------HYSSLRTPPSVYDYDMDMGISVL 469
S+ + + +++ + P S
Sbjct: 390 SIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD----- 444
Query: 470 KKIETVLGGFDTNNYFTERKWAS------ASDGTQIPICIVYRKNLVKLDGSDPLLLYGY 523
++I+ + + N + D + ++ + PLL+ Y
Sbjct: 445 QEIKILEENKELENALKNIQLPKEEIKKLEVDEITLWYKMILPPQFDR-SKKYPLLIQVY 503
Query: 524 G---SYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK-KKNTFTDF 579
G S + + A N G + A+ RG G + + K D
Sbjct: 504 GGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKL-LYAVYRKLGVYEVEDQ 562
Query: 580 IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 631
I I+ + ++++ I G S GG + L LFK +A P
Sbjct: 563 ITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSS 614
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 84/518 (16%), Positives = 169/518 (32%), Gaps = 126/518 (24%)
Query: 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETG-----TPVGKPLV--GVTASV-------- 241
++SP V++ ++VID+ +G T G + G+ V
Sbjct: 158 KLSPKGGFVSFIRG------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRH 211
Query: 242 ---EWAGN-EALVYITMDEILRPDKAWLHKLEADQSNDICL-YH---EKDDIYSLGLQAS 293
WA + A+ Y +DE P +++ AD+++ I Y + + L
Sbjct: 212 TGYWWAPDDSAIAYARIDESPVPV-QKRYEVYADRTDVIEQRYPAAGDANVQVKL----- 265
Query: 294 ESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFIT---RRSD 350
+ +E T+ ++D+ K +++ + RV D H R
Sbjct: 266 ----GVISPAEQAQTQ---WIDLGKEQDIYL--ARVNWRD------PQHLSFQRQSRDQK 310
Query: 351 ELFNSELLACPVDNTSETTVLIPHRES----VKLQDIQLFID--------------HLAV 392
+L +L+ + + + + E+ V L + F+D HL
Sbjct: 311 KL---DLVEVTLASNQQRVL---AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYR 364
Query: 393 YEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFI----DP----VYSIDPSES------- 437
+ +G +T V E L + F +Y++
Sbjct: 365 IDSKGKAAALTHGNWS-VDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK 423
Query: 438 -------VFSS--RILRFHYSSLRTPPSVYDYDMDMGISV------LKKIETVLGGFDTN 482
F+ + +S+ TPP + + + L + +
Sbjct: 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEKIATLVENDLADPKHPYARYREA 483
Query: 483 NYFTERKWASASDG-TQIPICIVYRKNLVKLDGSD--PLLLYGYG---SYEICNDPAFNS 536
E +A+DG T + ++ D + P+ +Y YG S + +
Sbjct: 484 QRPVEFGTLTAADGKTPLNYSVIKPAGF---DPAKRYPVAVYVYGGPASQTVTDSWPGRG 540
Query: 537 SRL---SLLDRGFIFAIAQI--RGGGELGRQWYENGKFLK-KKNTFTDFIACAEYLIKNC 590
L L +G++ + + RG GR + + K D + +L +
Sbjct: 541 DHLFNQYLAQQGYV--VFSLDNRGTPRRGRDF-GGALYGKQGTVEVADQLRGVAWLKQQP 597
Query: 591 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628
+ ++ ++G S GG + +L D + VA P
Sbjct: 598 WVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAP 635
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 6e-08
Identities = 68/523 (13%), Positives = 156/523 (29%), Gaps = 164/523 (31%)
Query: 246 NEALVYITMDEILRPDKAWL----HKLEADQSNDICLYHE-KDDIYSLGLQASESKKFLF 300
E +V ++E+LR + +L + S +Y E +D +Y ++++ F
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY------NDNQVF-- 126
Query: 301 IASESKITRFVFYLDVSKP-EELRVLTPRVV--G----------VDTAASHR------GN 341
++ ++R YL + + ELR V+ G +D S++
Sbjct: 127 --AKYNVSRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 342 HFFIT----RRSDELFN-----SELLACPVDNTSETTVLIPHR-ESVKLQDIQLF----- 386
F++ + + + + S+ + I R S++ + +L
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 387 ------IDHLAVYERE------GGLQKITTYRLPAVGEPLKSLQGGK-SVEFIDPVYSID 433
+ + V + + + T R V + L + S++ + D
Sbjct: 244 ENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 434 PSESVFSS--------------RILRFHYS----SLRTPPSVYDYDMDMGISVLKK-IET 474
+S+ S S+R + +D + L IE+
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 475 VLGGFDTN---NYFTERKWASASDGTQIP---ICIV----------------YRKNLVKL 512
L + F + + IP + ++ ++ +LV+
Sbjct: 362 SLNVLEPAEYRKMF--DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 513 DGSDPLLLYGYGSY-----EICNDPA--------------FNSSRLSLL-DRGFIFA--- 549
+ Y ++ N+ A F+S L + ++
Sbjct: 420 Q-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 550 --IAQIRGGGE--LGRQWYENGKFLKKK---------------NTFTDFIACAEYLIKNC 590
+ I L R + + +FL++K NT Y+ N
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 591 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVL 633
+ + ++ + + +L + + D+L
Sbjct: 539 PKYERLVN--------AILDFLPKIEENLICS-----KYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 9e-07
Identities = 95/572 (16%), Positives = 157/572 (27%), Gaps = 175/572 (30%)
Query: 265 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV 324
L E ++ +D S+ L E + T +F+ +SK EE
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--- 77
Query: 325 LTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQ-DI 383
+ + V R N+ F+ +E + T + I R+ +L D
Sbjct: 78 MVQKFVE----EVLRINYKFLMSP----IKTE----QRQPSMMTRMYIEQRD--RLYNDN 123
Query: 384 QLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQ--------G----GKSVEFIDPVYS 431
Q+F + V R Q R + L L+ G GK+ +D V
Sbjct: 124 QVFAKY-NVS-RL---QPYLKLR-----QALLELRPAKNVLIDGVLGSGKTWVALD-VCL 172
Query: 432 IDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWA 491
+ +I + + +P +VL+ ++ +L D N W
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPE-----------TVLEMLQKLLYQIDPN-------WT 214
Query: 492 SASDGTQ-IPICI--------------VYRKNLVKLDG-SDPLLLYGYGSYEICNDPAFN 535
S SD + I + I Y L+ L + + N AFN
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA---------KAWN--AFN 263
Query: 536 -SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594
S ++ L R + + T T L+K C
Sbjct: 264 LSCKILLTTRF--KQVTDFLSAATTTHISLD-----HHSMTLTPDEV-KSLLLKYLDCRP 315
Query: 595 EKLCIEGRSAGGL---LIGAVL---NMRPDLFKAAVAAVPFVDVLTTM-------LDPT- 640
+ L E + +I + D +K D LTT+ L+P
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-----VNCDKLTTIIESSLNVLEPAE 370
Query: 641 ----------------IPLTTAE--WEE--WGDP----------------WKEEFYF--- 661
IP W + D KE
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 662 -YMKSYSPVDNVKAQNYPH-ILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN-ILLFKCE 718
Y++ ++N A H +V Y+ P F + D
Sbjct: 431 IYLELKVKLENEYAL---HRSIVDH--------YNIPKTFDSDDLIPPYLDQYFYSH--- 476
Query: 719 LGAGHFSK---SGRFERLREAAFTYTFLMRAL 747
+G H R R + FL + +
Sbjct: 477 IGH-HLKNIEHPERMTLFRMVFLDFRFLEQKI 507
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 5e-05
Identities = 48/340 (14%), Positives = 100/340 (29%), Gaps = 108/340 (31%)
Query: 18 WLN-----LPRVICSSSSLSSSDSKTSTATMMSQSKLPSPPVAKKVEHKMELF------G 66
+L+ LPR + +++ S S ++ K+ +E
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 67 DVRVDNYYW----LRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGR--IK 120
+ R + + +L+ + + + + +L ++
Sbjct: 370 EYR--KMFDRLSVFPPSAHIPTILLSLIWFDVIKSD---------VMVVVNKLHKYSLVE 418
Query: 121 QEDVSAPFRQGSYYYYTRTLEGK-----EYVQHCRRLIHNNEAPPSVHDTMETGPDAPPE 175
++ ++ + + LE K EY H R ++ ++ P D+ + P P
Sbjct: 419 KQP-----KESTISIPSIYLELKVKLENEYALH-RSIV-DHYNIPKTFDSDDLIP--PYL 469
Query: 176 ----------HLILDENVKAEGRGFYSVGCFQVSPD-----NKL---------VAYAEDT 211
HL E+ + F V F D K+ +T
Sbjct: 470 DQYFYSHIGHHLKNIEHPE-RMTLFRMV--FL---DFRFLEQKIRHDSTAWNASGSILNT 523
Query: 212 KGD-EIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270
+ Y Y+ D + E LV +D +L K+E
Sbjct: 524 LQQLKFYKPYICDND------------------PKYERLVNAILD--------FLPKIEE 557
Query: 271 DQSNDICLYHEKD-DIYSLGLQASESKKFLFIASESKITR 309
+ L K D+ + L A + +F + ++ R
Sbjct: 558 N------LICSKYTDLLRIALMAEDE--AIFEEAHKQVQR 589
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 7e-08
Identities = 34/197 (17%), Positives = 73/197 (37%), Gaps = 27/197 (13%)
Query: 447 HYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDG-TQIPICIVY 505
+ S P V ++ G L + + G+ T A+DG T + +
Sbjct: 418 IFQSPTVPRKVTVTNIGKGSHTLLEAKNPDTGYAMPEIRTGT--IMAADGQTPLYYKLTM 475
Query: 506 RKNLVKLDGSD--PLLLYGYG---SYEICNDPAFNSSRL----SLLDRGFIFAIAQI--R 554
+ D + P+++Y YG + + + SS + +G+ + + R
Sbjct: 476 PLHF---DPAKKYPVIVYVYGGPHAQLVTK--TWRSSVGGWDIYMAQKGYA--VFTVDSR 528
Query: 555 GGGELGRQWYENGKFLKKK---NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGA 611
G G + + + ++ D + ++L + +++ + G S GG +
Sbjct: 529 GSANRGAAFE---QVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTN 585
Query: 612 VLNMRPDLFKAAVAAVP 628
++ D+FK VA P
Sbjct: 586 LMLTHGDVFKVGVAGGP 602
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 1e-07
Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 32/228 (14%)
Query: 511 KLDGSDPLLLYGYGSYEICNDPAFNSSRLSLL-DRGFIFAIAQIRGGGELGRQWYENGKF 569
G P ++ +G+ R SLL +GF +L +
Sbjct: 169 PEPGPFPGIVDMFGT-----GGGLLEYRASLLAGKGFAVMALAYYNYEDLPKTMETLH-- 221
Query: 570 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629
F YL+ + + + G S GG L ++ + + A V
Sbjct: 222 ------LEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSV 275
Query: 630 VDVLTTML-----DPTIPLTTAEWEEWGDPWKEEFYFY--------MKSYSPVDNVKAQN 676
+V T+ P + + + D + + KS+ PV+ ++
Sbjct: 276 ANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAES-- 333
Query: 677 YPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHF 724
L G +D A K + + GH+
Sbjct: 334 --TFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYP-ETGHY 378
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 30/145 (20%), Positives = 48/145 (33%), Gaps = 10/145 (6%)
Query: 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYG---SYEICNDPAFNSSRLSLLDRGFIFA 549
+ T+ ++ + K PLLL Y S + N + I A
Sbjct: 480 ILNETKFWYQMILPPHFDK-SKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVA 538
Query: 550 IAQIRGGGELGRQWYENGKFLKKK---NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGG 606
RG G G + + ++ D I A K + +++ I G S GG
Sbjct: 539 SFDGRGSGYQGDKIM---HAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGG 595
Query: 607 LLIGAVLNMRPDLFKAAVAAVPFVD 631
+ VL +FK +A P
Sbjct: 596 YVTSMVLGSGSGVFKCGIAVAPVSR 620
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 5e-07
Identities = 32/236 (13%), Positives = 66/236 (27%), Gaps = 32/236 (13%)
Query: 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLL-DRGFIFAIAQIRGGGELGR 561
+ L G P ++ +G R SLL GF +L
Sbjct: 145 VRATLFLPPGPGPFPGIIDIFGI-----GGGLLEYRASLLAGHGFATLALAYYNFEDLPN 199
Query: 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621
F Y++++ + + G S G + ++ + ++
Sbjct: 200 NMDNIS--------LEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSA 251
Query: 622 AAVAAVPFVDVLT--TMLDPTIP-----LTTAEWEEWGDPWKEEFY------FYMKSYSP 668
+ T +IP L + G + + S P
Sbjct: 252 TVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIP 311
Query: 669 VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHF 724
++ + IL+ G +D A+ V++ + + + G GH+
Sbjct: 312 IEKAQG----PILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYP-GTGHY 362
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 34/214 (15%), Positives = 64/214 (29%), Gaps = 31/214 (14%)
Query: 438 VFSSRILRF--HYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWAS--- 492
FS + F P D KK+ + +R+
Sbjct: 416 SFSHSMDFFLLKCEGPGVPMVTVHNTTDK-----KKMFDLETNEHVKKAINDRQMPKVEY 470
Query: 493 ---ASDGTQIPICIVYRKNLVKLDGSD--PLLLYGYG---SYEICNDPAFNSSRLSLLDR 544
D +P+ I+ + PLLL G S + + + +
Sbjct: 471 RDIEIDDYNLPMQILKPATF---TDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSH 527
Query: 545 GFIFAIAQIRGGGELGRQWYENGKFLKKK---NTFTDFIACAEYLIKNCYCTKEKLCIEG 601
G + RG G G + ++++ D + ++K Y + ++ + G
Sbjct: 528 GAVVVKCDGRGSGFQGTKLL---HEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFG 584
Query: 602 RSAGGLLIGAVLNMRPD----LFKAAVAAVPFVD 631
+ GG L +L + + F A P D
Sbjct: 585 KDYGGYLSTYILPAKGENQGQTFTCGSALSPITD 618
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 8e-07
Identities = 38/253 (15%), Positives = 67/253 (26%), Gaps = 48/253 (18%)
Query: 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLL--LYGYGSYEICNDPAFNSSR 538
+ F + G +IP + K++ D PL+ L+G G N +R
Sbjct: 140 IIDDFLAFTFKDPETGVEIPYRLFVPKDVNP-DRKYPLVVFLHGAGERGTDNYLQVAGNR 198
Query: 539 LSLL--------DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 590
+++ Q + + + I L+
Sbjct: 199 GAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEY 258
Query: 591 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEE 650
+ ++ I G S GG + P+LF AA+ DV
Sbjct: 259 NIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVS----------------- 301
Query: 651 WGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 710
++ + I V +DP V V KL E+
Sbjct: 302 -----------KVERIKDI---------PIWVFHAEDDPVVPVENSRVLVKKLAEIGGKV 341
Query: 711 NILLFKCELGAGH 723
++ H
Sbjct: 342 RYTEYEKGFMEKH 354
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 5e-05
Identities = 36/257 (14%), Positives = 64/257 (24%), Gaps = 49/257 (19%)
Query: 513 DGSDPLLLY--GYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 570
D + L+ G + + F S + + + + G G+ Q
Sbjct: 156 DKAQDTLIVVGGGDTS---REDLFYMLGYSGWEHDYNVLMVDLPGQGKNPNQGL------ 206
Query: 571 KKKNTFTDFI-ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629
F A ++ EK+ I G S GG + KA +A+ P
Sbjct: 207 ----HFEVDARAAISAILDWYQAPTEKIAIAGFSGGGYFTAQAVEKDKR-IKAWIASTPI 261
Query: 630 VDVLTTML-------------------DPTIPLTTAEWEEWGDPWK------EEFYFYMK 664
DV T AE W+ +
Sbjct: 262 YDVAEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVL 321
Query: 665 SYSP---VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 721
+ + + L G + + + ++ D + F E GA
Sbjct: 322 EQAQIVDYNKIDVP----SLFLVGAGEDSELMRQSQVLYDNFKQRGIDVTLRKFSSESGA 377
Query: 722 GHFSKSGRFERLREAAF 738
+ F + F
Sbjct: 378 DAHCQVNNFRLMHYQVF 394
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 24/178 (13%), Positives = 47/178 (26%), Gaps = 19/178 (10%)
Query: 541 LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIE 600
L + G + + A L Y ++ +
Sbjct: 217 LAKHDIAMLTVDMPSVGYSSKYPLTE-------DYSRLHQAVLNELFSIPYVDHHRVGLI 269
Query: 601 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD--PTIPLTTAEW--EEWGDPWK 656
G GG + + + + KA V + + +P + G
Sbjct: 270 GFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVLASRLGKSVV 329
Query: 657 EEFYFY--MKSYS----PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKT 708
+ + M ++S + + P IL + DP YS+ + VA
Sbjct: 330 DIYSLSGQMAAWSLKVQGFLSSRKTKVP-ILAMSLEGDPVSPYSD-NQMVAFFSTYGK 385
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 Length = 615 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 8e-04
Identities = 30/165 (18%), Positives = 52/165 (31%), Gaps = 18/165 (10%)
Query: 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLL----YGYGSYEICNDPAFNS 536
+N+Y DG ++ ++ K + P++L Y
Sbjct: 20 SNDYIKREVMIPMRDGVKL-HTVIVLP---KGAKNAPIVLTRTPYDASGRTERLASPHMK 75
Query: 537 SRLS-----LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF-----TDFIACAEYL 586
LS ++ G+I +RG + N TD ++L
Sbjct: 76 DLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWL 135
Query: 587 IKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 631
+KN + K+ + G S G + L K AV P +D
Sbjct: 136 VKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMID 180
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 758 | |||
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.92 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.9 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.89 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.88 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.88 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.87 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.87 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.87 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.87 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.87 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.86 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.86 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.85 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.85 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.85 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.85 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.84 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.84 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.83 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.83 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.83 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.83 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.83 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.83 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.82 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.82 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.82 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.82 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.82 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.82 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.82 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.82 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.81 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.81 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.81 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.81 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.81 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.81 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.81 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.8 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.8 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.8 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.8 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.79 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.79 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.79 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.78 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.78 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.78 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.78 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.77 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.77 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.77 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.76 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.76 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.76 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.76 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.75 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.75 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.74 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.74 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.73 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.73 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.72 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.72 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.72 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.72 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.71 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.71 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.71 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.71 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.7 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.7 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.7 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.69 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.69 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.69 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.68 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.68 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.68 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.68 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.68 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.67 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.67 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.67 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.66 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.66 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.66 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.66 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.65 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.64 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.64 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.63 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.62 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.62 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.62 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.61 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.61 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.61 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.61 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.61 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.61 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.6 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.6 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.6 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.6 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.59 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.58 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.58 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.58 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.58 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.58 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.58 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.58 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.57 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.57 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.57 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.56 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.56 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.56 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.55 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.55 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.55 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.55 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.55 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.54 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.54 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.54 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.54 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.54 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.53 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.53 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.53 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.53 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.53 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.52 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.52 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.52 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.51 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.51 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.51 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.51 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.51 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.51 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.49 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.49 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.49 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.48 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.48 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.47 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.47 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.47 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.47 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.47 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.46 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.46 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.46 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.45 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.45 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.45 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.44 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.44 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.44 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.44 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.43 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.43 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.43 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.43 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.42 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.42 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.42 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.42 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.41 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.41 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.41 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.41 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.41 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.41 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.4 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.4 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.4 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.4 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.39 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.39 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.39 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.39 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.38 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.38 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.38 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.37 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.37 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.37 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.37 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.36 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.35 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.35 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.34 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.34 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.34 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.33 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.31 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.31 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.31 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 98.96 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.28 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.28 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.26 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.25 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.25 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.24 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.23 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.23 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.22 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.21 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.21 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.16 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.14 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.14 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.12 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.11 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 99.1 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.09 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.06 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 99.05 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.02 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 99.01 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.01 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.01 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.0 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.0 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.99 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 98.97 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.97 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 98.93 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 98.93 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.93 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 98.93 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.92 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 98.92 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.91 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 98.9 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.9 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 98.9 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.89 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.88 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.88 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.87 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 98.86 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 98.84 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.84 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.83 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.83 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.82 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.8 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.8 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 98.8 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.78 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.78 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.78 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.76 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.76 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.75 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.73 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.73 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.73 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.73 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.72 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.7 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.7 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.7 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.69 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.69 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.68 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.68 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.66 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.65 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.65 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.64 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.63 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.62 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.62 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.62 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.61 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.61 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.6 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.6 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 98.6 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.6 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.59 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.59 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.59 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.57 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.57 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.57 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.57 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.56 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.56 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.55 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.55 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.54 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.5 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.5 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.49 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.49 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.48 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.46 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.46 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.44 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.44 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.44 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.44 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.43 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.43 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.42 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.42 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.42 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.42 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.41 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.41 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.4 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.38 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.38 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.37 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.37 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.37 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.35 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.34 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.33 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.32 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.31 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.31 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.31 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.3 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.28 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.27 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.27 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.26 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.26 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.25 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.25 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.24 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.24 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.24 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.24 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.23 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.23 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.23 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.23 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.22 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.21 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.2 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.18 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.18 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.17 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.17 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.17 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.15 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.15 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.15 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.15 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.14 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.13 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.13 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.08 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 98.08 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.05 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.04 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.04 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.03 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.02 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.02 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.01 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.01 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.01 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 97.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.97 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 97.95 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.95 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.95 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.94 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 97.92 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.89 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.88 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.87 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.87 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.84 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.83 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.82 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.8 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 97.77 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.74 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.71 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.69 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.69 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 97.68 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.67 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.67 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.66 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 97.65 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.65 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 97.64 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.64 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.63 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.63 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.62 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.62 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.62 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.61 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.6 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.6 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.57 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.56 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.53 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 97.53 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 97.52 | |
| 4ebb_A | 472 | Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2 | 97.52 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.48 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 97.45 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 97.43 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.4 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.39 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.38 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.37 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.36 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.35 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.35 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.31 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.27 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.24 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.23 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 97.22 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.21 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.18 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.17 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.13 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 97.13 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.12 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 97.11 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 97.09 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.09 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 97.06 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.04 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.04 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.03 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.02 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.02 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.95 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 96.94 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.92 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.92 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.9 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.9 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.83 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.81 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.78 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 96.76 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 96.71 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 96.66 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 96.66 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.44 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.41 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.39 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.38 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 96.37 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.31 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.3 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 96.28 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.27 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 96.26 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.23 | |
| 4az3_A | 300 | Lysosomal protective protein 32 kDa chain; hydrola | 96.22 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.2 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.2 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.19 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.16 | |
| 1gxs_A | 270 | P-(S)-hydroxymandelonitrIle lyase chain A; inhibit | 96.07 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.07 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 96.02 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 95.95 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 95.92 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 95.92 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.86 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 95.79 |
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-99 Score=886.61 Aligned_cols=665 Identities=27% Similarity=0.473 Sum_probs=572.5
Q ss_pred CCCCCCCcccceEEeecCCeeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHccccCCCCCCcE
Q 004368 49 LPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPF 128 (758)
Q Consensus 49 ~~~~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~~ev~~~l~~en~y~~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~ 128 (758)
.+.||+|+|+|+++++||+++.|||+||||.+ +|||++||++||+||+++|+++ ++|++|++||++++.+++.++|.
T Consensus 9 ~~~~p~~~~~~~~~~~~g~~~~d~y~wl~~~~--~~~~~~~~~~~n~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~p~ 85 (693)
T 3iuj_A 9 RLHYPVTRQGEQVDHYFGQAVADPYRWLEDDR--SPETEAWVKAQNAVTQDYLAQI-PYRAAIKEKLAASWNYAKEGAPF 85 (693)
T ss_dssp -CCCCCCCCCCCEEEETTEEEECTTGGGGCTT--SHHHHHHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHSCCCEECCCE
T ss_pred CCCCCCCCCCCeEEEeCCccccCCchhhcCCC--CHHHHHHHHHHHHHHHHHHccC-hhHHHHHHHHHHhhccccCCCCE
Confidence 45699999999999999999999999999987 9999999999999999999999 89999999999999999999999
Q ss_pred EeCcEEEEEEecCCCeeEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecccccCCCCeEEEeeEEECCCCCEEEEE
Q 004368 129 RQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYA 208 (758)
Q Consensus 129 ~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~ 208 (758)
++|+|+||.++.++++|+++||+... ++++||||+|+++++ +++.+++++|||||++|||+
T Consensus 86 ~~g~~~y~~~~~~~~~~~~~~r~~~~------------------~~~~vllD~n~la~~-~~~~l~~~~~SpDg~~lAy~ 146 (693)
T 3iuj_A 86 REGRYHYFFKNDGLQNQNVLWRQQEG------------------KPAEVFLDPNTLSPD-GTTALDQLSFSRDGRILAYS 146 (693)
T ss_dssp EETTEEEEEEECSSCSSCEEEEECTT------------------SCCEEEECGGGGSTT-SCCEEEEEEECTTSSEEEEE
T ss_pred EECCEEEEEEEcCCCceeEEEEeCCC------------------CCcEEEEehhhccCC-CcEEEEEEEECCCCCEEEEE
Confidence 99999999999999999999996431 467999999999986 67899999999999999999
Q ss_pred EeCCCCeEEEEEEEECCCCceeeccccCc-ceeEEEecCC-eEEEEEeCCC--------CCCceEEEEEcCCCCCCcEEE
Q 004368 209 EDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE-ALVYITMDEI--------LRPDKAWLHKLEADQSNDICL 278 (758)
Q Consensus 209 ~~~~G~e~~~l~v~dl~~g~~~~~~~~~~-~~~~~wspDg-~l~y~~~~~~--------~~~~~v~~~~l~~~~~~~~~v 278 (758)
.+.+|+++++|+|+|+++|+.+.+.+.++ .++++|| || +|+|++.+.. .++.+||+|++++++.+++++
T Consensus 147 ~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v 225 (693)
T 3iuj_A 147 LSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLV 225 (693)
T ss_dssp EECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEE
T ss_pred EecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEE
Confidence 99999999999999999999887777766 5779999 99 8999998754 678899999999998888999
Q ss_pred eeecC--CceeeEEEEcCCCcEEEEEecCCcc-eEEEEEeCCCCC-ceEEeeccccceeeEEeecCCEEEEEEcCCCCCC
Q 004368 279 YHEKD--DIYSLGLQASESKKFLFIASESKIT-RFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITRRSDELFN 354 (758)
Q Consensus 279 ~~~~~--~~~~~~~~~S~Dg~~l~~~s~~~~~-~~l~~~d~~~~~-~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~ 354 (758)
+++.+ +.+.+++.|||||++|++.+..... ++||++|++++. .++.++.+.....+.++++|++|||.+|.+ +++
T Consensus 226 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~-~~~ 304 (693)
T 3iuj_A 226 FGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRD-APN 304 (693)
T ss_dssp ESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTT-CTT
T ss_pred EecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCC-CCC
Confidence 98765 5567789999999999998876544 699999998774 477888776665556899999999999987 678
Q ss_pred cEEEEEeCCCCCccee--eecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCccccc
Q 004368 355 SELLACPVDNTSETTV--LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSI 432 (758)
Q Consensus 355 ~~L~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i 432 (758)
++|++++++++...+| ++++..+. + ++++++++|++..+++|..+|++++++ |+.. +.+.+|+.. .+
T Consensus 305 ~~l~~~d~~~~~~~~~~~l~~~~~~~-~-~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~------~~l~~p~~~-~~ 373 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWRDLIPERQQV-L-TVHSGSGYLFAEYMVDATARVEQFDYE--GKRV------REVALPGLG-SV 373 (693)
T ss_dssp CEEEEEETTSCCGGGCEEEECCCSSC-E-EEEEETTEEEEEEEETTEEEEEEECTT--SCEE------EEECCSSSS-EE
T ss_pred CEEEEEeCCCCCccccEEEecCCCCE-E-EEEEECCEEEEEEEECCeeEEEEEECC--CCee------EEeecCCCc-eE
Confidence 9999999987544333 77776654 5 999999999999999999999999877 4432 455566543 33
Q ss_pred CCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCceeEEEEeeCCCCeEEEEEEEeecccccc
Q 004368 433 DPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKL 512 (758)
Q Consensus 433 ~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~ 512 (758)
.+++.+++++.++|.++|+++|+++|.+|+.+++.++++... ..+++..+.++++++++.||++|++++++|++. ..
T Consensus 374 ~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~~~--~~~~~~~~~~~~~~~~~~dg~~i~~~l~~p~~~-~~ 450 (693)
T 3iuj_A 374 SGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRASA--APFKPEDYVSEQRFYQSKDGTRVPLIISYRKGL-KL 450 (693)
T ss_dssp EECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEECCC--SSCCGGGEEEEEEEEECTTSCEEEEEEEEESSC-CC
T ss_pred EeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEeCC--CCcChhhCeeEEEEEecCCCcEEEEEEEecCCC-CC
Confidence 445667889999999999999999999999998866655433 257778889999999999999999999999987 66
Q ss_pred CCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCC
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 592 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 592 (758)
+++.|+||++|||++.+..+.|...++.|+++||+|+++|+||+|++|..|+.++....+.+.++|+++++++|++++++
T Consensus 451 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 530 (693)
T 3iuj_A 451 DGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYT 530 (693)
T ss_dssp SSCCCEEEECCCCTTCCCCCCCCHHHHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCccEEEEECCCCCcCCCCccCHHHHHHHHCCCEEEEEeCCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHH-HHHHHhcCcccc
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEF-YFYMKSYSPVDN 671 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~-~~~l~~~sp~~~ 671 (758)
|++||+|+|+|+||++++++++++|++|+|+|+.+|++|+..++. .......+.+||+|.+++. +++|.++||+++
T Consensus 531 d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~---~~~~~~~~~~~g~p~~~~~~~~~~~~~sp~~~ 607 (693)
T 3iuj_A 531 RTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHT---FTAGTGWAYDYGTSADSEAMFDYLKGYSPLHN 607 (693)
T ss_dssp CGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGGG---SGGGGGCHHHHCCTTSCHHHHHHHHHHCHHHH
T ss_pred CcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhcc---CCCchhHHHHcCCccCHHHHHHHHHhcCHHHh
Confidence 999999999999999999999999999999999999999887642 1222223478899987776 889999999999
Q ss_pred cCC-CCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCC
Q 004368 672 VKA-QNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 672 i~~-~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
+++ +++||+||+||.+|++||++++++|+++|++++.....+.+.+.+++||++........+..+++++||.++||..
T Consensus 608 ~~~~~~~Pp~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 687 (693)
T 3iuj_A 608 VRPGVSYPSTMVTTADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMGYR 687 (693)
T ss_dssp CCTTCCCCEEEEEEESSCSSSCTHHHHHHHHHHHHHCCSSSCEEEEEEC-------CHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hcccCCCCceeEEecCCCCCCChhHHHHHHHHHHhhCCCCCCEEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHcCCC
Confidence 999 8999999999999999999999999999999853222344444459999987666777888888999999999987
Q ss_pred CCCC
Q 004368 751 PSVG 754 (758)
Q Consensus 751 ~~~~ 754 (758)
..+.
T Consensus 688 ~~~~ 691 (693)
T 3iuj_A 688 ELPR 691 (693)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 5443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-98 Score=888.15 Aligned_cols=680 Identities=41% Similarity=0.731 Sum_probs=593.6
Q ss_pred CCCCCCCcccceEEeecC---------------CeeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCchHhHHHHHH
Q 004368 49 LPSPPVAKKVEHKMELFG---------------DVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFA 113 (758)
Q Consensus 49 ~~~~P~a~~~~~~~~~hG---------------~~~~DpY~WLed~~~~~~ev~~~l~~en~y~~~~l~~~~~~~~~l~~ 113 (758)
.+.||+|+|+|++++ || +++.|||+||||++++||||++||++||+||+++|++++++|++|++
T Consensus 30 ~~~~p~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~d~y~wl~d~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~l~~ 108 (751)
T 2xe4_A 30 SAQPPIAAKKPHRVT-LGYVEGEDRGPNPMNPPRYREDPYFWMRDDDRKDPAVIEHLNKEKVYFQARSADIAQLRDDIYA 108 (751)
T ss_dssp CCCCCCCCCCCCEEE-ESCCTTSCCCSSCCSSCEEEECTTGGGCCTTSCCHHHHHHHHHHHHHHHHHHGGGHHHHHHHHH
T ss_pred CCCCCCCCCCCeeec-CCCcccccccccccCCCeEEeeCCccccCCCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 356899999999999 99 99999999999976679999999999999999999999999999999
Q ss_pred HHHccccCCCCCCcEEeCcEEEEEEecCCCeeEEEEEEecC--CCCCCCCccccCCCCCCCC--CceEEeecccccCCCC
Q 004368 114 ELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIH--NNEAPPSVHDTMETGPDAP--PEHLILDENVKAEGRG 189 (758)
Q Consensus 114 e~~~~~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~--~~~vllD~n~~~~~~~ 189 (758)
||++|+.+++.++|.++|+|+||+++.+|++|+++||++.. .+ + .++||||+|+++++++
T Consensus 109 e~~~~~~~~~~~~p~~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~----------------~~~~~~vlld~n~~a~~~~ 172 (751)
T 2xe4_A 109 EHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCRVFTDKEPG----------------DVAAEEVIIDVNQVAEGKA 172 (751)
T ss_dssp HHHHTSCSSEECCCEEETTEEEEEEECTTCCSCEEEEEETTSCTT----------------CTTTCEEEEEHHHHTTTCS
T ss_pred HHHHhcccccCCCCeEECCEEEEEEECCCCceeEEEEEcCCCCCC----------------CCcCCEEEechhHhccCCC
Confidence 99999999999999999999999999999999999998751 11 3 5799999999999889
Q ss_pred eEEEeeEEEC-CCCCEEEEEEeCCCCeEEEEEEEECCCC-ceeeccccCcceeEEEecCC-eEEEEEeCCCCCCceEEEE
Q 004368 190 FYSVGCFQVS-PDNKLVAYAEDTKGDEIYTVYVIDIETG-TPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 190 ~~~i~~~~~S-PDG~~lAy~~~~~G~e~~~l~v~dl~~g-~~~~~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~ 266 (758)
++.++.++|| |||++|||+.+..|+++++|+++|+++| +.+...++++.++++||||| +|+|++.+...++.+||++
T Consensus 173 ~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 173 FCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp CCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred eEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 9999999999 9999999999999999999999999999 75544455556679999999 8999998776777899999
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ce--EEeeccccceeeEEe-ecCCE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-EL--RVLTPRVVGVDTAAS-HRGNH 342 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~--~~l~~~~~~~~~~~s-~dg~~ 342 (758)
++++++.++++++++.+..+..++.|||||++|++.+.+...++||++|++++. .+ +.++++..+..+.++ ++|++
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~ 332 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH 332 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence 999987667889987777777889999999999999887788999999998764 36 778776555555555 56999
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCCCccee-eecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC-----CCCc-cc
Q 004368 343 FFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA-----VGEP-LK 415 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~-----~g~~-~~ 415 (758)
|||+++.+++.+++|+++++++++..+. ++++..+..+.++++++++|++.++.+|..++++++++. .++. .
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~- 411 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGL- 411 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCC-
T ss_pred EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCccc-
Confidence 9999998645689999999875333345 788887878899999999999999999999999998721 1322 2
Q ss_pred cccCCceeeccCcccccCCC--Cc--ccCCcEEEEEEecCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCceeEEEEe
Q 004368 416 SLQGGKSVEFIDPVYSIDPS--ES--VFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWA 491 (758)
Q Consensus 416 ~l~~~~~i~~p~~~~~i~~~--~~--~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (758)
+.+.+|+..+.+ ++ +. +++++.++|+++|+++|+++|.+|+.+++.++++.......+++..+.++++++
T Consensus 412 -----~~l~l~~~~~~~-~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 485 (751)
T 2xe4_A 412 -----REVVMEEPIFTV-HLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGGFDAANYKVERRFA 485 (751)
T ss_dssp -----EECCCCCSSCEE-EECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEEECCCCTTCCGGGEEEEEEEE
T ss_pred -----eEECCCCceeEE-EeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEeccccccCCCccceEEEEEEE
Confidence 445566543322 22 22 567889999999999999999999999887666544433357777888999999
Q ss_pred eCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHh-ccccc
Q 004368 492 SASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE-NGKFL 570 (758)
Q Consensus 492 ~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~-~~~~~ 570 (758)
++.||++|++++++|++. +++++.|+||++|||++....+.|...++.|+++||+|+++|+||+|++|..|+. .+...
T Consensus 486 ~s~dG~~i~~~l~~p~~~-~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~G~~~~~~~~~~~ 564 (751)
T 2xe4_A 486 TAPDQTKIPLSVVYHKDL-DMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDRGMIFAIAHIRGGSELGRAWYEIGAKYL 564 (751)
T ss_dssp ECTTCCEEEEEEEEETTS-CTTSCCCEEEECCCCTTCCCCCCCCGGGHHHHTTTCEEEEECCTTSCTTCTHHHHTTSSGG
T ss_pred ECCCCcEEEEEEEcCCCC-CCCCCccEEEEECCCCCcCCCCcchHHHHHHHhCCcEEEEEeeCCCCCcCcchhhcccccc
Confidence 999999999999999986 6678899999999999988888899999999999999999999999999999999 99988
Q ss_pred CCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhc
Q 004368 571 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEE 650 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e 650 (758)
++.+.++|+++++++|++++++|++||+|+|+|+||++++++++++|++|+|+|+.+|++|+..++.+..++++...|.+
T Consensus 565 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 644 (751)
T 2xe4_A 565 TKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGEWEE 644 (751)
T ss_dssp GTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCHHHHHTCTTSTTHHHHTTT
T ss_pred ccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeCCcchHHhhhcccCcccchhhHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999988777777777777788
Q ss_pred cCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChH
Q 004368 651 WGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRF 730 (758)
Q Consensus 651 ~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~ 730 (758)
||+|.+++.++.+..+||+++++++++||+||+||++|.+||++++++|+++|++.+++.+++++.+.+++||++.....
T Consensus 645 ~g~p~~~~~~~~~~~~sp~~~~~~~~~Pp~Lii~G~~D~~vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~ 724 (751)
T 2xe4_A 645 WGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMVQCGLHDPRVAYWEPAKWVSKLRECKTDNNEILLNIDMESGHFSAKDRY 724 (751)
T ss_dssp TCCTTSHHHHHHHHHHCTGGGCCSSCCCEEEEEEETTCSSSCTHHHHHHHHHHHHHCCSCCCEEEEEETTCCSSCCSSHH
T ss_pred cCCCCCHHHHHHHHhcChhhhhccCCCCceeEEeeCCCCCCCHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCcCChh
Confidence 99998888888999999999999999988999999999999999999999999999887777888777799999877777
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCC
Q 004368 731 ERLREAAFTYTFLMRALSMLPSV 753 (758)
Q Consensus 731 ~~~~~~~~~~~fl~~~l~~~~~~ 753 (758)
..++..+.+++||.++|+..+.+
T Consensus 725 ~~~~~~~~~~~Fl~~~l~~~~~~ 747 (751)
T 2xe4_A 725 KFWKESAIQQAFVCKHLKSTVRL 747 (751)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCG
T ss_pred HHHHHHHHHHHHHHHHhCCCchh
Confidence 77888888999999999987654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-91 Score=821.67 Aligned_cols=660 Identities=26% Similarity=0.414 Sum_probs=566.6
Q ss_pred CCCCCcccceEEeecCCeeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHccccCCCCCCcEEe
Q 004368 51 SPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQ 130 (758)
Q Consensus 51 ~~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~~ev~~~l~~en~y~~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~~~ 130 (758)
.||+|+|+|+++++||+++.|||+||||.+ +|||++||++||+||+++|+++ ++|++|++||++++..++.+.|.++
T Consensus 2 ~~p~~~~~~~~~~~~g~~~~d~y~wl~~~~--~~~~~~~~~~en~~t~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p~~d 78 (695)
T 2bkl_A 2 SYPATRAEQVVDTLHGVQVADPYRWLEDEK--APEVQTWMTAQNAHAREALAKF-PGREALAARFKELFYTDSVSTPSRR 78 (695)
T ss_dssp CCSCCCCCCCEEEETTEEEECTTGGGGCTT--SHHHHHHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHSCCEECCCEEE
T ss_pred CCCCCCCCCeeeeeCCcEEecCChHhcCCC--CHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHhhccccCCCCEEE
Confidence 489999999999999999999999999977 9999999999999999999999 9999999999999999999999999
Q ss_pred CcEEEEEEecCCCeeEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEe
Q 004368 131 GSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAED 210 (758)
Q Consensus 131 g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~ 210 (758)
|+++||.++.+|++++++||+...+ +.+++|+|+|++++++ ...+..++|||||++|||+.+
T Consensus 79 G~~~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~l~d~~~~a~~~-~~~~~~~~~SPDG~~la~~~~ 140 (695)
T 2bkl_A 79 NGRFFYVRTHKDKEKAILYWRQGES-----------------GQEKVLLDPNGWSKDG-TVSLGTWAVSWDGKKVAFAQK 140 (695)
T ss_dssp TTEEEEEEECTTCSSCEEEEEESTT-----------------SCCEEEECGGGSSSSS-CEEEEEEEECTTSSEEEEEEE
T ss_pred CCEEEEEEEcCCCeEEEEEEEcCCC-----------------CCcEEEEchHHhccCC-CEEEEEEEECCCCCEEEEEEC
Confidence 9999999999999999999987532 3678999999999865 478999999999999999999
Q ss_pred CCCCeEEEEEEEECCCCcee-eccccCc-ceeEEEecCC-eEEEEEeCCC--------CCCceEEEEEcCCCCCCcEEEe
Q 004368 211 TKGDEIYTVYVIDIETGTPV-GKPLVGV-TASVEWAGNE-ALVYITMDEI--------LRPDKAWLHKLEADQSNDICLY 279 (758)
Q Consensus 211 ~~G~e~~~l~v~dl~~g~~~-~~~~~~~-~~~~~wspDg-~l~y~~~~~~--------~~~~~v~~~~l~~~~~~~~~v~ 279 (758)
.+|++..+|+++|+++|+.+ ...+.++ ..+++||||| .|+|++.+.. .++.+||++++++++.++++++
T Consensus 141 ~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~ 220 (695)
T 2bkl_A 141 PNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH 220 (695)
T ss_dssp ETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE
T ss_pred CCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE
Confidence 99999999999999999987 4455555 3679999999 8999987654 4577899999999876678888
Q ss_pred eecCC-ceeeEEEEcCCCcEEEEEecCC-cceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEE
Q 004368 280 HEKDD-IYSLGLQASESKKFLFIASESK-ITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSEL 357 (758)
Q Consensus 280 ~~~~~-~~~~~~~~S~Dg~~l~~~s~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L 357 (758)
++.+. .+..++.|||||++|++.+.+. ..++||+++..+++ ++.+..+.....+.++++|+ +|+.++.+ +++++|
T Consensus 221 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~g~-l~~~s~~~-~~~~~l 297 (695)
T 2bkl_A 221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHAWKDR-FYVLTDEG-APRQRV 297 (695)
T ss_dssp CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEEETTE-EEEEECTT-CTTCEE
T ss_pred ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEecCCc-EEEEECCC-CCCCEE
Confidence 76553 4667889999999999988776 67899999887665 77887766655555668999 99999876 678999
Q ss_pred EEEeCCCCCcc--eeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCC
Q 004368 358 LACPVDNTSET--TVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPS 435 (758)
Q Consensus 358 ~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~ 435 (758)
++++++++... +.++++..+..+.+++++++++++..+.++..+|++++++ |+.. +.+.+++.. .+.++
T Consensus 298 ~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~--g~~~------~~l~~~~~~-~v~~~ 368 (695)
T 2bkl_A 298 FEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLK--GKPV------RTVQLPGVG-AASNL 368 (695)
T ss_dssp EEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETT--CCEE------EECCCSSSS-EECCC
T ss_pred EEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC--CCee------EEecCCCCe-EEEEe
Confidence 99999764432 3477776566788899999999999999999999988875 4422 334454332 34456
Q ss_pred CcccCCcEEEEEEecCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCceeEEEEeeCCCCeEEEEEEEeeccccccCCC
Q 004368 436 ESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGS 515 (758)
Q Consensus 436 ~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~ 515 (758)
+.+++++.++|+++|+++|.++|.+|+.+++.++++.... .|++..+.++++++++.||.+|++++++|++. ..+++
T Consensus 369 ~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~~~~--~~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~-~~~~~ 445 (695)
T 2bkl_A 369 MGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKVDV--PMNPEQYQVEQVFYASKDGTKVPMFVVHRKDL-KRDGN 445 (695)
T ss_dssp BSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEECCC--SSCGGGEEEEEEEEECTTSCEEEEEEEEETTC-CCSSC
T ss_pred ecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCCC--CCCHHHCeEEEEEEECCCCCEEEEEEEECCCC-CCCCC
Confidence 6677899999999999999999999999998766654432 37777889999999999999999999999986 66788
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|+||++|||++....+.|....+.|+++||+|+++|+||+|++|..|+..+....+.+.++|+++++++|++++++|++
T Consensus 446 ~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~ 525 (695)
T 2bkl_A 446 APTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPK 525 (695)
T ss_dssp CCEEEECCCCTTCCCCCCCCGGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGG
T ss_pred ccEEEEECCCCccccCCCcCHHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhcCCCcHHHHHHHHHHHHHcCCCCcc
Confidence 99999999999998888899988999999999999999999999999999999888999999999999999999999999
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCC
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ 675 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~ 675 (758)
||+|+|+|+||++++++++++|++|+|+|+.+|++|+..+. ..+.....+.+||+|.+++.++.+..+||+++++++
T Consensus 526 ~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~ 602 (695)
T 2bkl_A 526 RLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYH---LFGSGRTWIPEYGTAEKPEDFKTLHAYSPYHHVRPD 602 (695)
T ss_dssp GEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGG---GSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCSS
T ss_pred cEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhcc---ccCCCcchHHHhCCCCCHHHHHHHHhcChHhhhhhc
Confidence 99999999999999999999999999999999999988653 233444445789999889999999999999999987
Q ss_pred C-CCeEEEeccCCCCCCCChHHHHHHHHHHh---cCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCC
Q 004368 676 N-YPHILVTAGLNDPRVMYSEPAKFVAKLRE---MKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLP 751 (758)
Q Consensus 676 ~-~P~~Li~~G~~D~~V~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 751 (758)
+ +||+||+||.+|.+|+++++++|+++|++ .+.+.+++++ +++||++........+..+.+++||.++|+..+
T Consensus 603 ~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 679 (695)
T 2bkl_A 603 VRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGNPATALLRIE---ANAGHGGADQVAKAIESSVDLYSFLFQVLDVQG 679 (695)
T ss_dssp CCCCEEEEEEETTCSSSCTHHHHHHHHHHHTSTTCCSCEEEEEE---TTCBTTBCSCHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CCCCCEEEEeeCCCCCCChHHHHHHHHHHHhhccCCCCEEEEEe---CCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4 57799999999999999999999999998 4555554444 599998766666677778889999999998765
Q ss_pred C
Q 004368 752 S 752 (758)
Q Consensus 752 ~ 752 (758)
.
T Consensus 680 ~ 680 (695)
T 2bkl_A 680 A 680 (695)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-90 Score=821.71 Aligned_cols=664 Identities=25% Similarity=0.376 Sum_probs=569.1
Q ss_pred CCCCCCcccc-eEEeecCCeeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHccccCCCCCCcE
Q 004368 50 PSPPVAKKVE-HKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPF 128 (758)
Q Consensus 50 ~~~P~a~~~~-~~~~~hG~~~~DpY~WLed~~~~~~ev~~~l~~en~y~~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~ 128 (758)
+.||+|+|+| +++++||+++.|||+||||.+ +|||++||++||+|++++|+++ ++|++|++||++++..++.+.|.
T Consensus 4 ~~~p~~~~~~~~~~~~~g~~~~d~y~wl~~~~--~~~~~~~~~~en~~~~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p~ 80 (710)
T 2xdw_A 4 FQYPDVYRDETAIQDYHGHKVCDPYAWLEDPD--SEQTKAFVEAQNKITVPFLEQC-PIRGLYKERMTELYDYPKYSCHF 80 (710)
T ss_dssp SCCCCCCCCTTCEEEETTEEEECTTGGGGCTT--SHHHHHHHHHHHHHHHHHHHHS-THHHHHHHHHHHHHCSCEECCCE
T ss_pred CCCCCCCCCCCeeeeeCCcEEccCChhhcCCC--CHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHhhccccCCCCE
Confidence 4589999999 999999999999999999977 9999999999999999999999 99999999999999999999999
Q ss_pred EeCcEEEEEEecCCCeeEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecccccCCCCeEEEeeEEECCCCCEEEEE
Q 004368 129 RQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYA 208 (758)
Q Consensus 129 ~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~ 208 (758)
++|+|+||.++.+++.++++||+...+ +.+++|||+|.+++++ ...+..++|||||++|||+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~lld~~~l~~~~-~~~~~~~~~SPDg~~la~~ 142 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLE-----------------GEARVFLDPNILSDDG-TVALRGYAFSEDGEYFAYG 142 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTT-----------------SCCEEEECGGGGCTTS-CEEEEEEEECTTSSEEEEE
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCC-----------------CCcEEEECHHHhccCC-CEEEEEEEECCCCCEEEEE
Confidence 999999999999999999999976432 3578999999998754 4588999999999999999
Q ss_pred EeCCCCeEEEEEEEECCCCceeeccccCc-ceeEEEecCC-eEEEEEeCCC-----------CCCceEEEEEcCCCCCCc
Q 004368 209 EDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE-ALVYITMDEI-----------LRPDKAWLHKLEADQSND 275 (758)
Q Consensus 209 ~~~~G~e~~~l~v~dl~~g~~~~~~~~~~-~~~~~wspDg-~l~y~~~~~~-----------~~~~~v~~~~l~~~~~~~ 275 (758)
.+.+|+++++|+++|+++|+.+.+++.+. ..+++||||| .|+|++.+.. .++.+||++++++++.++
T Consensus 143 ~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~ 222 (710)
T 2xdw_A 143 LSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED 222 (710)
T ss_dssp EEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC
T ss_pred EcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc
Confidence 99999999999999999999887655544 4669999999 8999987654 457789999999987667
Q ss_pred EEEeeecC-CceeeEEEEcCCCcEEEEEecCCc--ceEEEEEeCCC------CC-ceEEeeccccceeeEEeecCCEEEE
Q 004368 276 ICLYHEKD-DIYSLGLQASESKKFLFIASESKI--TRFVFYLDVSK------PE-ELRVLTPRVVGVDTAASHRGNHFFI 345 (758)
Q Consensus 276 ~~v~~~~~-~~~~~~~~~S~Dg~~l~~~s~~~~--~~~l~~~d~~~------~~-~~~~l~~~~~~~~~~~s~dg~~l~~ 345 (758)
++++++.+ +.+..++.|||||++|++.+.... .++||++|+++ +. .++.+..+.....+.|+++|++|||
T Consensus 223 ~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~ 302 (710)
T 2xdw_A 223 ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTF 302 (710)
T ss_dssp EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEE
T ss_pred eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEE
Confidence 88887654 555678899999999999886443 68999999986 53 3777877666666679999999999
Q ss_pred EEcCCCCCCcEEEEEeCCCCCcc--eeeecCCCCceeeeEEEe-CCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCce
Q 004368 346 TRRSDELFNSELLACPVDNTSET--TVLIPHRESVKLQDIQLF-IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKS 422 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~ 422 (758)
.++.+ +++++|++++++++... +.++++.....+.++.++ ++++++.++.++..+|+++++.. |+.+ +.
T Consensus 303 ~s~~~-~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~------~~ 374 (710)
T 2xdw_A 303 KTNRH-SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALL------KI 374 (710)
T ss_dssp EECTT-CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEE------EE
T ss_pred EECCC-CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEE------Ee
Confidence 99987 67899999999875322 347777665567888888 78999999999999999998743 4422 33
Q ss_pred eeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc--EEEEEEeeecCCCCCCCceeEEEEeeCCCCeEEE
Q 004368 423 VEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI--SVLKKIETVLGGFDTNNYFTERKWASASDGTQIP 500 (758)
Q Consensus 423 i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~ 500 (758)
+.++ ...+.+++.+++++.++|+++|+++|.++|.+|+.+++ .++++...+ ..|++..+.++++++++.||++|+
T Consensus 375 l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~dg~~i~ 451 (710)
T 2xdw_A 375 FPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTV-KGIDASDYQTVQIFYPSKDGTKIP 451 (710)
T ss_dssp ECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCC-TTCCGGGEEEEEEEEECTTSCEEE
T ss_pred cCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeeeccc-CCcCccccEEEEEEEEcCCCCEEE
Confidence 4444 22343455567889999999999999999999999888 666665443 357888899999999999999999
Q ss_pred EEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHH-cCcEEEEEecCCCCCCchhHHhcccccCCcChHhHH
Q 004368 501 ICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF 579 (758)
Q Consensus 501 ~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~ 579 (758)
+++++|++. ..+++.|+||++|||++....+.|...++.|++ +||+|+++|+||+|++|..|+.++....+.+.++|+
T Consensus 452 ~~~~~p~~~-~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~ 530 (710)
T 2xdw_A 452 MFIVHKKGI-KLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDF 530 (710)
T ss_dssp EEEEEETTC-CCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHTTSGGGTHHHHHHH
T ss_pred EEEEecCCC-CCCCCccEEEEEcCCCCCcCCCcccHHHHHHHHhCCcEEEEEccCCCCCCChHHHHhhhhhcCCchHHHH
Confidence 999999986 667889999999999999888899988889999 999999999999999999999999989999999999
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHH
Q 004368 580 IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEF 659 (758)
Q Consensus 580 ~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~ 659 (758)
++++++|++++++|++||+|+|+|+||++++++++++|++|+|+|+.+|++|+..++... .....+.+||+|.+++.
T Consensus 531 ~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~---~~~~~~~~~g~~~~~~~ 607 (710)
T 2xdw_A 531 QCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYT---IGHAWTTDYGCSDSKQH 607 (710)
T ss_dssp HHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGST---TGGGGHHHHCCTTSHHH
T ss_pred HHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccccC---CChhHHHhCCCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999988765321 11123378899988888
Q ss_pred HHHHHhcCcccccC-----CCCCCeEEEeccCCCCCCCChHHHHHHHHHHhc-------CCCCceEEEEecCCCCCCCCC
Q 004368 660 YFYMKSYSPVDNVK-----AQNYPHILVTAGLNDPRVMYSEPAKFVAKLREM-------KTDDNILLFKCELGAGHFSKS 727 (758)
Q Consensus 660 ~~~l~~~sp~~~i~-----~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~-------~~~~~~~~~~~~~~~gH~~~~ 727 (758)
++.+.++||++++. ++++||+||+||++|.+|+++++.+|+++|++. +.+++++++ +++||++..
T Consensus 608 ~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~gH~~~~ 684 (710)
T 2xdw_A 608 FEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVD---TKAGHGAGK 684 (710)
T ss_dssp HHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCEEEEEE---SSCCSSTTC
T ss_pred HHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccChhHHHHHHHHHHhhhccccCCCcCEEEEEe---CCCCcCCCC
Confidence 99999999999999 789877999999999999999999999999988 666555555 499999877
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCC
Q 004368 728 GRFERLREAAFTYTFLMRALSMLPS 752 (758)
Q Consensus 728 ~~~~~~~~~~~~~~fl~~~l~~~~~ 752 (758)
......+..+.+++||.++|+..+.
T Consensus 685 ~~~~~~~~~~~~~~fl~~~l~~~~~ 709 (710)
T 2xdw_A 685 PTAKVIEEVSDMFAFIARCLNIDWI 709 (710)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCccC
Confidence 6666677888899999999998753
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-90 Score=819.11 Aligned_cols=669 Identities=27% Similarity=0.407 Sum_probs=557.6
Q ss_pred CCCCCCCcccceEEeecCCeeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHccccCCCCCCcE
Q 004368 49 LPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPF 128 (758)
Q Consensus 49 ~~~~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~~ev~~~l~~en~y~~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~ 128 (758)
++.||+|+|+|+++++||+++.|||+||||.+|++|||++||++||+|++++|+++ +++++|++||++++..+..+.|.
T Consensus 37 ~~~~p~~~~~~~~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~~aen~~t~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p~ 115 (741)
T 1yr2_A 37 LPPYPASPQVPLVEDHFGEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTAAYLKQL-PERAALEKRMKALIDYERFGLPQ 115 (741)
T ss_dssp -CCCCCCCCCCCEEEETTEEEECTTGGGGSCTTTCHHHHHHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHSCCCEECCCE
T ss_pred cCCCCCCCCCCeeeeeCCcEEccCcHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHhhcccccCCCE
Confidence 45689999999999999999999999999986669999999999999999999999 99999999999999999999999
Q ss_pred EeCcEEEEEEecCCCeeEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecccccCCCCeEEEeeEEECCCCCEEEEE
Q 004368 129 RQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYA 208 (758)
Q Consensus 129 ~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~ 208 (758)
++|+|+||.++.++++++++||+..... +.+.+++|||+|++++++ ...+..+.|||||++|||+
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~lld~~~l~~~~-~~~~~~~~~SPDG~~la~~ 180 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAP--------------VGTKGRVLLDPNTWAKDG-ATALDAWAASDDGRLLAYS 180 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSC--------------TTCCCEEEECGGGCC-----EEEEEEEECTTSSEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCcc--------------CCCCCEEEECHHHhccCC-CEEEEeEEECCCCCEEEEE
Confidence 9999999999999999999999875310 013679999999998754 4788999999999999999
Q ss_pred EeCCCCeEEEEEEEECCCCceeeccccCc-ceeEEEecCCeEEEEEeCCCC---------CCceEEEEEcCCCCCCcEEE
Q 004368 209 EDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNEALVYITMDEIL---------RPDKAWLHKLEADQSNDICL 278 (758)
Q Consensus 209 ~~~~G~e~~~l~v~dl~~g~~~~~~~~~~-~~~~~wspDg~l~y~~~~~~~---------~~~~v~~~~l~~~~~~~~~v 278 (758)
.+.+|+++.+|+++|+++|+.+.+.+.+. ..+++||||..|+|++.+... ++.+||++++++++.++.++
T Consensus 181 ~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv 260 (741)
T 1yr2_A 181 VQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV 260 (741)
T ss_dssp EEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEE
T ss_pred EcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEE
Confidence 99999999999999999999877655554 357999999558888765542 36789999999987767888
Q ss_pred eeecCC-ceeeEEEEcCCCcEEEEEecCC--cceEEEEEeCCCCC-c-eEEeeccccceeeEEeecCCEEEEEEcCCCCC
Q 004368 279 YHEKDD-IYSLGLQASESKKFLFIASESK--ITRFVFYLDVSKPE-E-LRVLTPRVVGVDTAASHRGNHFFITRRSDELF 353 (758)
Q Consensus 279 ~~~~~~-~~~~~~~~S~Dg~~l~~~s~~~--~~~~l~~~d~~~~~-~-~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~ 353 (758)
+++.+. .+..++.|||||++|++.+.+. ..++||++|++++. . ++.|..+.....+.++|+|++||+.++.+ ++
T Consensus 261 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~-~~ 339 (741)
T 1yr2_A 261 FATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDG-AP 339 (741)
T ss_dssp ECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTT-CT
T ss_pred eccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCC-CC
Confidence 887653 4567889999999999988664 56899999998763 3 67777766555666789999999999987 67
Q ss_pred CcEEEEEeCCCCC-cceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCccccc
Q 004368 354 NSELLACPVDNTS-ETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSI 432 (758)
Q Consensus 354 ~~~L~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i 432 (758)
+++|++++++++. ..+.++++... .+.+++++++++++..+.++..+|++++++ |+.. +.+.+|+.. .+
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~--g~~~------~~l~~~~~~-~v 409 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIAGNRLFASYIHDAKSQVLAFDLD--GKPA------GAVSLPGIG-SA 409 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEEBTEEEEEEEETTEEEEEEEETT--SCEE------EECBCSSSC-EE
T ss_pred CCEEEEEeCCCCccccEEEecCCCC-eEEEEEEECCEEEEEEEECCEEEEEEEeCC--CCce------eeccCCCCe-EE
Confidence 8999999997642 23337776544 577889999999999999999999998875 4422 344554432 33
Q ss_pred CCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCceeEEEEeeCCCCeEEEEEEEeecccccc
Q 004368 433 DPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKL 512 (758)
Q Consensus 433 ~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~ 512 (758)
.+++.+++++.++|+++|+++|.++|.+|+.+++.++++... ..|++..+.++++++++.||.+|++++++|++.
T Consensus 410 ~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~~~--~~~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~--- 484 (741)
T 1yr2_A 410 SGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEPVH--LTFDPADFRVEQVFYPSKDGTKVPMFIVRRKDA--- 484 (741)
T ss_dssp EEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECSCCC--CSSCGGGEEEEEEEEECTTSCEEEEEEEEETTC---
T ss_pred EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCC--CCCChhHCEEEEEEEEcCCCCEEEEEEEecCCC---
Confidence 345566788999999999999999999999998865544322 257778889999999999999999999999874
Q ss_pred CCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCC
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 592 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 592 (758)
+++.|+||++|||++....+.|....+.|+++||+|+++|+||+|++|..|+.++...++.+.++|+++++++|++++++
T Consensus 485 ~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 564 (741)
T 1yr2_A 485 KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDKKQNVFDDFIAAGEWLIANGVT 564 (741)
T ss_dssp CSCCCEEEECCCCTTCCCCCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCcEEEEECCCCCccCCCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCC
Confidence 46789999999999998888999999999999999999999999999999999999888899999999999999999999
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCccccc
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV 672 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i 672 (758)
|++||+|+|+|+||++++++++++|++|+|+|+.+|++|+..+. ..+.....+.+||+|.+++.++.+..+||++++
T Consensus 565 ~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~ 641 (741)
T 1yr2_A 565 PRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFD---QFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNV 641 (741)
T ss_dssp CTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGG---GSTTGGGGHHHHCCTTSHHHHHHHHTTCGGGCC
T ss_pred ChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCcccccccc---CCCCCchhHHHcCCCCCHHHHHHHHHcCchhhh
Confidence 99999999999999999999999999999999999999988753 233333445788999888999999999999999
Q ss_pred CC-CCCCeEEEeccCCCCCCCChHHHHHHHHHHh---cCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 673 KA-QNYPHILVTAGLNDPRVMYSEPAKFVAKLRE---MKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 673 ~~-~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
++ +++||+||+||.+|.+|+++++.+++++|++ .+.+++++++ +++||++..+.....+..+.+++||.++|+
T Consensus 642 ~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~g~~~~l~~~---~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 718 (741)
T 1yr2_A 642 RSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPHLIRIE---TRAGHGSGKPIDKQIEETADVQAFLAHFTG 718 (741)
T ss_dssp CTTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHHSCCCSSCEEEEEC------------CHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhhhhcCCCCEEEEEe---CCCCcCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 98 8887799999999999999999999999999 6666555554 499999877666667778889999999999
Q ss_pred CCCCCCC
Q 004368 749 MLPSVGS 755 (758)
Q Consensus 749 ~~~~~~~ 755 (758)
..+.+.+
T Consensus 719 ~~~~~~~ 725 (741)
T 1yr2_A 719 LTPRPWS 725 (741)
T ss_dssp CCCCCCC
T ss_pred CCccchh
Confidence 8766543
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-81 Score=727.85 Aligned_cols=654 Identities=21% Similarity=0.280 Sum_probs=534.0
Q ss_pred eecCCeeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHccccCC-CCCCcEEeCcEEEEEEecC
Q 004368 63 ELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQE-DVSAPFRQGSYYYYTRTLE 141 (758)
Q Consensus 63 ~~hG~~~~DpY~WLed~~~~~~ev~~~l~~en~y~~~~l~~~~~~~~~l~~e~~~~~~~~-~~s~p~~~g~~~y~~~~~~ 141 (758)
.-||+++.|||+||||.+ +||+++|+++||++|.++|++. |.+++|+++|++.+..+ ..+.|.++|+|+|+.++.+
T Consensus 14 ~~~~~~~~Dpy~wLEd~~--~~~~~~wv~aqN~~T~~~l~~~-p~~~~l~~~~~~~~~~~~ri~~p~~~g~~~y~f~~d~ 90 (711)
T 4hvt_A 14 NNKQIFNPKETKFLEEAE--GVEALEWAKERTSKTEKALQAM-QEYKQIKKEIETIFYDQRKTPYGVIRKGYVYNFWMDD 90 (711)
T ss_dssp ------CHHHHGGGGSSS--SSHHHHHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHTCTTSCCCCEEETTEEEEEECCS
T ss_pred CCCceeeCCCchhhcCCC--CHHHHHHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHhccccccCCcEEECCEEEEEEecC
Confidence 458999999999999988 9999999999999999999999 78999999999998887 6899999999999999999
Q ss_pred CCeeEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecccccCCCCe-EEEeeEE-ECCCCCEEEEEEeCCCCeEEEE
Q 004368 142 GKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGF-YSVGCFQ-VSPDNKLVAYAEDTKGDEIYTV 219 (758)
Q Consensus 142 g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~~~~~~~-~~i~~~~-~SPDG~~lAy~~~~~G~e~~~l 219 (758)
.+++.++.|..... .+ .+.+.+|||||+|++++..|. ..+.+.. +||||+++||+.+.+|++...|
T Consensus 91 ~~~~gl~rrt~~~~----------~~--~~~p~wevllD~d~l~~~~g~~~~~~g~~~~~~~~~~~~~~ls~~G~d~~~~ 158 (711)
T 4hvt_A 91 KNPQGLWRRTLVDN----------YS--KDKPNWEVLIDFDKLSKKIGKKVAYRGVSNCFQNPNRYLISMSFGGKDEMFF 158 (711)
T ss_dssp SCSSCEEEEEEHHH----------HT--SSSCCCEEEEEHHHHHHHHTSCEEEEEEEECSSSTTEEEEEEEETTCSEEEE
T ss_pred CCCcEEEEEccchh----------cc--cCCCCcEEEeccccccccCCCcEEEeceeecCCCCCEEEEEeCCCCCceeEE
Confidence 99995555433310 00 012468999999999976454 7788888 9999999999999999999999
Q ss_pred EEEECCCCceeecccc-Cc---------ceeEEEecCCeEEEEEe------CCCCCCceEEEEEcCCCCCCcEEEeeecC
Q 004368 220 YVIDIETGTPVGKPLV-GV---------TASVEWAGNEALVYITM------DEILRPDKAWLHKLEADQSNDICLYHEKD 283 (758)
Q Consensus 220 ~v~dl~~g~~~~~~~~-~~---------~~~~~wspDg~l~y~~~------~~~~~~~~v~~~~l~~~~~~~~~v~~~~~ 283 (758)
+++|+++++.+.+.+. .+ ++.++|.+++++||.+. .+.+.+.+||+|++|+++.++++||++.+
T Consensus 159 ~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~ 238 (711)
T 4hvt_A 159 REWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPK 238 (711)
T ss_dssp EEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCT
T ss_pred EEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCC
Confidence 9999999999876544 22 24459985558877642 23456889999999999999999999988
Q ss_pred CceeeEEEEcCCCcE----EEEEec-CCcceEEEEEeCCCCC-ceEEeeccccceeeEEeecCCEEEEEEcCC------C
Q 004368 284 DIYSLGLQASESKKF----LFIASE-SKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITRRSD------E 351 (758)
Q Consensus 284 ~~~~~~~~~S~Dg~~----l~~~s~-~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~------~ 351 (758)
..++++...++|+++ +++... +..++++|++|++.+. .+..|....+ ... ++..++++|+.+..+ +
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~ 316 (711)
T 4hvt_A 239 EYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD-ATL-QGSFKEYVFWLLRSDWKFKSHN 316 (711)
T ss_dssp TSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT-CEE-EEEETTEEEEECSSCEEETTEE
T ss_pred CceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc-ceE-eeeECCEEEEEECccccccccc
Confidence 888888888999985 566544 4556999999987543 3455532221 222 344577888877543 1
Q ss_pred CCCcEEEEEeCCCCC-----ccee--eecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCce-e
Q 004368 352 LFNSELLACPVDNTS-----ETTV--LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKS-V 423 (758)
Q Consensus 352 ~~~~~L~~~~~~~~~-----~~~~--l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~-i 423 (758)
.++++|++++++++. ..+| +++++.+..++++.++++++++.+.+++..++.++++.. |+.. .+. +
T Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-g~~~-----~~~~i 390 (711)
T 4hvt_A 317 IKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLATYDNVVAKVVTFTLEN-EQWT-----KPVVL 390 (711)
T ss_dssp ECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEEEEETTEEEEEEECEET-TEEC-----CCEEE
T ss_pred CCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEECCC-CceE-----EEecc
Confidence 478999999987632 2233 677888889999999999999999999999999987753 3200 133 5
Q ss_pred eccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCceeEEEEeeCCCCeEEEEEE
Q 004368 424 EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICI 503 (758)
Q Consensus 424 ~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l 503 (758)
.+|+. +++...+.+.+++.+++.++|+++|+++|.+|+. ++.++++. ....+++..+.++++++++.||++|++++
T Consensus 391 ~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l~~--~~~~~~~~~~~~e~v~~~s~DG~~i~~~l 466 (711)
T 4hvt_A 391 KLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELKIIRK--ALYSFDSENYVLEQKEATSFDGVKIPYFL 466 (711)
T ss_dssp CCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEEEEEC--CSSCCCGGGEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEEEEec--CCcccCcccCeeEEEEEECCCCeEEEEEE
Confidence 66643 2343344457888999999999999999999998 66544433 23467778888999999999999999999
Q ss_pred EeeccccccCCCCCEEEEecCCCccCCCCCCChHH-HHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHH
Q 004368 504 VYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSR-LSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC 582 (758)
Q Consensus 504 ~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~-~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~ 582 (758)
++|++. +++++.|+||++|||++.+..+.|.... +.|+++||+|+++|+||+|++|..|+..+...++.+.++|++++
T Consensus 467 ~~P~~~-~~~~~~P~vl~~HGG~~~~~~~~~~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aa 545 (711)
T 4hvt_A 467 VYKKGI-KFDGKNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAV 545 (711)
T ss_dssp EEETTC-CCSSCCCEEEECCCCTTCCCCCCCCHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHH
T ss_pred EecCCC-CCCCCccEEEEECCCCCCCCCCcccHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHH
Confidence 999987 6678999999999999999999999877 49999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHH
Q 004368 583 AEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFY 662 (758)
Q Consensus 583 ~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~ 662 (758)
++||++++++|++||+|+|+|+||++++++++++|++|+|+|+.+|++|+..+... ........+||+|.+++.++.
T Consensus 546 v~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f~a~V~~~pv~D~~~~~~~---~~~~~~~~~~G~p~~~~~~~~ 622 (711)
T 4hvt_A 546 SEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDMIRYKEF---GAGHSWVTEYGDPEIPNDLLH 622 (711)
T ss_dssp HHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGS---TTGGGGHHHHCCTTSHHHHHH
T ss_pred HHHHHHcCCCCcccEEEEeECHHHHHHHHHHHhCcCceEEEEEeCCccchhhhhcc---ccchHHHHHhCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876421 111222378899998888899
Q ss_pred HHhcCcccccCCCC-CCeEEEeccCCCCCCCChHHHHHHHHH-HhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHH
Q 004368 663 MKSYSPVDNVKAQN-YPHILVTAGLNDPRVMYSEPAKFVAKL-REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTY 740 (758)
Q Consensus 663 l~~~sp~~~i~~~~-~P~~Li~~G~~D~~V~~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 740 (758)
+.++||++++++++ +||+||+||++|++||++++++++++| ++.+.++++++++ ++||++........+..+.++
T Consensus 623 l~~~SP~~~v~~i~~~pPvLii~G~~D~~Vp~~~s~~~~~aL~~~~g~pv~l~~~p---~~gHg~~~~~~~~~~~~~~i~ 699 (711)
T 4hvt_A 623 IKKYAPLENLSLTQKYPTVLITDSVLDQRVHPWHGRIFEYVLAQNPNTKTYFLESK---DSGHGSGSDLKESANYFINLY 699 (711)
T ss_dssp HHHHCGGGSCCTTSCCCEEEEEEETTCCSSCTHHHHHHHHHHTTCTTCCEEEEEES---SCCSSSCSSHHHHHHHHHHHH
T ss_pred HHHcCHHHHHhhcCCCCCEEEEecCCCCcCChHHHHHHHHHHHHHcCCCEEEEEEC---CCCCcCcCCcchHHHHHHHHH
Confidence 99999999999985 577999999999999999999999999 9999887766665 999998777777888888899
Q ss_pred HHHHHhcCCC
Q 004368 741 TFLMRALSML 750 (758)
Q Consensus 741 ~fl~~~l~~~ 750 (758)
+||.++||..
T Consensus 700 ~FL~~~Lg~~ 709 (711)
T 4hvt_A 700 TFFANALKLK 709 (711)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHhCCc
Confidence 9999999875
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-49 Score=461.48 Aligned_cols=521 Identities=15% Similarity=0.093 Sum_probs=383.1
Q ss_pred CCCCCE-EEEEEeCCCCeEEEEEEEECC--C-Cceeeccc------cCcceeEEEecCC-eEEEEEeCCC-----CCCce
Q 004368 199 SPDNKL-VAYAEDTKGDEIYTVYVIDIE--T-GTPVGKPL------VGVTASVEWAGNE-ALVYITMDEI-----LRPDK 262 (758)
Q Consensus 199 SPDG~~-lAy~~~~~G~e~~~l~v~dl~--~-g~~~~~~~------~~~~~~~~wspDg-~l~y~~~~~~-----~~~~~ 262 (758)
||||++ |||+.+.. .+||+++++ + ++...++. ......++||||| .|+|++.+.. ....+
T Consensus 87 SPDg~~~la~~~~~~----~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 87 RPAGGPLLVFTHFGD----QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp CSSSSCEEEEEBTTT----CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred ecCCCeEEEEEECCC----CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 599999 99987653 469999998 5 76665432 1235678999999 8999886521 23357
Q ss_pred EEEEEcCCCC----CCcEEEeeecCCceeeEEEEcCCCcEEEEEecCC-----cceEEEEEeCC-CCC--ceEEeeccc-
Q 004368 263 AWLHKLEADQ----SNDICLYHEKDDIYSLGLQASESKKFLFIASESK-----ITRFVFYLDVS-KPE--ELRVLTPRV- 329 (758)
Q Consensus 263 v~~~~l~~~~----~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~-----~~~~l~~~d~~-~~~--~~~~l~~~~- 329 (758)
||++++.+.. .+...+. +....+...+.|||||++|++.+.+. ...+||++|++ ++. ..+.+....
T Consensus 163 i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAVRELS-DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp EEEEETTSTTTTCGGGSEESS-CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred EEEEECCCCccccCCceeEEE-ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 9999998721 1334444 12234555788999999999887654 34789999998 462 255665542
Q ss_pred cce-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCce-------eeeEEEe-CCEEEEEEEeCCee
Q 004368 330 VGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVK-------LQDIQLF-IDHLAVYEREGGLQ 400 (758)
Q Consensus 330 ~~~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~-~~~l~~~~~~~g~~ 400 (758)
... ...|+|||+ ++|.++.++ ..+|+++++++ +....+++...... +..+.+. ++.+++.... +..
T Consensus 242 ~~~~~~~~spdg~-l~~~~~~~~--~~~l~~~~~~~-~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (662)
T 3azo_A 242 EAIAQAEWAPDGS-LIVATDRTG--WWNLHRVDPAT-GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA 316 (662)
T ss_dssp BCEEEEEECTTSC-EEEEECTTS--SCEEEEECTTT-CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC
T ss_pred ceEcceEECCCCe-EEEEECCCC--CeEEEEEECCC-CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc
Confidence 222 345999999 888888763 56899999865 23333444332221 3455665 4667777777 877
Q ss_pred EEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEEEEEeeecCCCC
Q 004368 401 KITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFD 480 (758)
Q Consensus 401 ~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~~~~~~~~~~~~ 480 (758)
+|++++++ ++.++. +..+ ...+..+ ++++++.++|..++...|.++|.+|+.+++.+.+.... ...++
T Consensus 317 ~l~~~d~~--~~~~~~------l~~~--~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~-~~~~~ 384 (662)
T 3azo_A 317 VLGILDPE--SGELVD------AAGP--WTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARH-TDPVD 384 (662)
T ss_dssp EEEEEETT--TTEEEE------CCSS--CCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCC-CCSSC
T ss_pred EEEEEECC--CCcEEE------ecCC--CCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCC-cccCC
Confidence 77777765 432322 2211 1122212 15678899999999999999999999998854443221 12334
Q ss_pred CCCc-eeEEEEeeCCCCeEEEEEEEeeccccc----cCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCC
Q 004368 481 TNNY-FTERKWASASDGTQIPICIVYRKNLVK----LDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRG 555 (758)
Q Consensus 481 ~~~~-~~~~~~~~s~dG~~i~~~l~~p~~~~~----~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG 555 (758)
+..+ ..+.+.+++.||.+|+++++.|++. . ++++.|+||++||+++......|...++.|+++||+|+.+|+||
T Consensus 385 ~~~~~~~~~~~~~~~dg~~i~~~~~~P~~~-~~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG 463 (662)
T 3azo_A 385 PAYYPEPQIRTFTAPDGREIHAHIYPPHSP-DFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGG 463 (662)
T ss_dssp GGGSCCCEEEEEECTTSCEEEEEEECCCCS-SEECCTTCCCCEEEEECSSSSSCCCCSCCHHHHHHHTTTCEEEEEECTT
T ss_pred ccccCcceEEEEEcCCCCEEEEEEECCCCc-cccCCCCCCccEEEEECCCCCccCcccchHHHHHHHhCCCEEEEECCCC
Confidence 3334 3688899998999999999999875 3 45679999999999887777788888999999999999999999
Q ss_pred CCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhc
Q 004368 556 GGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 635 (758)
Q Consensus 556 ~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~ 635 (758)
++++|..|........+...++|+.+++++|++++++|+++|+|+|+|+||+++++++.+ |++|+|+|+.+|+.|+...
T Consensus 464 ~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~~~~~~~~~ 542 (662)
T 3azo_A 464 STGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGW 542 (662)
T ss_dssp CSSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEESCCCCHHHH
T ss_pred CCCccHHHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecCCccCHHHH
Confidence 999999999877666677789999999999999999999999999999999999998886 9999999999999998765
Q ss_pred cCCCCCCCChhhh--hccCCC-CCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCce
Q 004368 636 MLDPTIPLTTAEW--EEWGDP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 712 (758)
Q Consensus 636 ~~~~~~~~~~~~~--~e~g~p-~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~ 712 (758)
.......+ ...+ ..+|.+ .+. +.+..++|+.++.++++| +||+||++|.+||+.++++++++|++.+.++++
T Consensus 543 ~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~sp~~~~~~~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 617 (662)
T 3azo_A 543 ADGGTHDF-ESRYLDFLIGSFEEFP---ERYRDRAPLTRADRVRVP-FLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAY 617 (662)
T ss_dssp HTTCSCGG-GTTHHHHHTCCTTTCH---HHHHHTCGGGGGGGCCSC-EEEEEETTCSSSCTHHHHHHHHHHTTSCCCEEE
T ss_pred hcccccch-hhHhHHHHhCCCccch---hHHHhhChHhHhccCCCC-EEEEeeCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 43111111 1112 124543 343 345678999999999988 999999999999999999999999999988887
Q ss_pred EEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 004368 713 LLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPS 752 (758)
Q Consensus 713 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 752 (758)
++++ ++||+... .....+....+++||.++|+..+.
T Consensus 618 ~~~~---~~gH~~~~-~~~~~~~~~~~~~fl~~~l~~~~~ 653 (662)
T 3azo_A 618 LSFE---GEGHGFRR-KETMVRALEAELSLYAQVFGVEVA 653 (662)
T ss_dssp EEET---TCCSSCCS-HHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred EEEC---CCCCCCCC-hHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7776 89998643 333444556679999999987654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-46 Score=441.62 Aligned_cols=528 Identities=15% Similarity=0.114 Sum_probs=372.6
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCc--------------------ceeEEEecCC-eEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV--------------------TASVEWAGNE-ALVY 251 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~--------------------~~~~~wspDg-~l~y 251 (758)
+..+.|||||++|||+.+ .+||++|+++|+..+++..+. ...+.||||| .|+|
T Consensus 114 ~~~~~~SPdG~~la~~~~------~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~ 187 (740)
T 4a5s_A 114 TQWVTWSPVGHKLAYVWN------NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAY 187 (740)
T ss_dssp EEEEEECSSTTCEEEEET------TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEE
T ss_pred ceeeEECCCCCEEEEEEC------CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEE
Confidence 668899999999999965 379999999998776543321 1248899999 8999
Q ss_pred EEeCCCCC-------------------------------CceEEEEEcCC---CCC-CcEEEeee----cCCceeeEEEE
Q 004368 252 ITMDEILR-------------------------------PDKAWLHKLEA---DQS-NDICLYHE----KDDIYSLGLQA 292 (758)
Q Consensus 252 ~~~~~~~~-------------------------------~~~v~~~~l~~---~~~-~~~~v~~~----~~~~~~~~~~~ 292 (758)
.+.+...- ..+|+++++.+ +.. +...+... ....+...++|
T Consensus 188 ~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w 267 (740)
T 4a5s_A 188 AQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTW 267 (740)
T ss_dssp EEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEE
T ss_pred EEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEE
Confidence 88654310 11577788876 521 11122110 13345567899
Q ss_pred cCCCcEEEEEecCC-cceEEEEEeCCCCC------ceEEe-ecccc-ce------eeEEeecCCEEE-EEEcCCCCCCcE
Q 004368 293 SESKKFLFIASESK-ITRFVFYLDVSKPE------ELRVL-TPRVV-GV------DTAASHRGNHFF-ITRRSDELFNSE 356 (758)
Q Consensus 293 S~Dg~~l~~~s~~~-~~~~l~~~d~~~~~------~~~~l-~~~~~-~~------~~~~s~dg~~l~-~~s~~~~~~~~~ 356 (758)
||||+.+++..++. ....|+++|+++++ ....+ ..... .+ ...|+|||+.|+ +.+.+++ ..+
T Consensus 268 spdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G--~~~ 345 (740)
T 4a5s_A 268 ATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG--YRH 345 (740)
T ss_dssp EETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS--CEE
T ss_pred eCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC--ceE
Confidence 99999887766654 45689999988764 01112 11111 11 345999999988 6666653 578
Q ss_pred EEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEe----CCeeEEEEEEcCCCCCccc-cccCCceeeccCcccc
Q 004368 357 LLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYERE----GGLQKITTYRLPAVGEPLK-SLQGGKSVEFIDPVYS 431 (758)
Q Consensus 357 L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~l~v~~l~~~g~~~~-~l~~~~~i~~p~~~~~ 431 (758)
|+.+++++ +....++....++ ..-+.++++.+++.... .+..+|+.++++ |.... +|+.. +......
T Consensus 346 l~~~~~~~-~~~~~lT~g~~~v-~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~--g~~~~~~lt~~----~~~~~~~ 417 (740)
T 4a5s_A 346 ICYFQIDK-KDCTFITKGTWEV-IGIEALTSDYLYYISNEYKGMPGGRNLYKIQLI--DYTKVTCLSCE----LNPERCQ 417 (740)
T ss_dssp EEEEETTC-SSCEESCCSSSCE-EEEEEECSSEEEEEESCGGGCTTCBEEEEEETT--EEEEEEESSTT----TSTTTBC
T ss_pred EEEEECCC-CceEecccCCEEE-EEEEEEeCCEEEEEEecCCCCCceeEEEEEECC--CCCcceeeccc----cCCCCCc
Confidence 99999876 3444565544332 22344678888888776 345566666665 43211 22210 0000112
Q ss_pred cCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEE-EEEEee-ecCCCCCCCc-eeEEEEeeCCCCeEEEEEEEeecc
Q 004368 432 IDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV-LKKIET-VLGGFDTNNY-FTERKWASASDGTQIPICIVYRKN 508 (758)
Q Consensus 432 i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~-~~~~~~-~~~~~~~~~~-~~~~~~~~s~dG~~i~~~l~~p~~ 508 (758)
...+++++++..+++.++++. |+.++.++..+++.. ++.... ....+....+ ..+.+.+ +.||.+|+++++.|++
T Consensus 418 ~~~~~~S~dg~~~~~~~s~~~-~p~~~l~~~~~~~~~~~l~~n~~~~~~~~~~~~~~~~~~~~-~~dg~~l~~~~~~P~~ 495 (740)
T 4a5s_A 418 YYSVSFSKEAKYYQLRCSGPG-LPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFI-ILNETKFWYQMILPPH 495 (740)
T ss_dssp BEEEEECTTSSEEEEEECSBS-SCEEEEEETTTTEEEEEEECCHHHHHHHTTEECCEEEEEEE-EETTEEEEEEEEECTT
T ss_pred eEEEEECCCCCEEEEEeCCCC-CCEEEEEECCCCcEEEEeccChhhhhhhhhccCCccEEEEE-ccCCeEEEEEEEeCCC
Confidence 233567789999999999987 889999999877632 222211 1111222222 3455666 7899999999999998
Q ss_pred ccccCCCCCEEEEecCCCccCC-CCCCC-hHHHHHH-HcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHH
Q 004368 509 LVKLDGSDPLLLYGYGSYEICN-DPAFN-SSRLSLL-DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEY 585 (758)
Q Consensus 509 ~~~~~~~~P~vl~~hGg~~~~~-~~~~~-~~~~~l~-~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~ 585 (758)
+ ++.++.|+||++|||++... ...|. .....++ ++||+|+.+|+||+|++|..|........+...++|+.+++++
T Consensus 496 ~-~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~ 574 (740)
T 4a5s_A 496 F-DKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQ 574 (740)
T ss_dssp C-CTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHH
T ss_pred C-CCCCCccEEEEECCCCcccccccccCcCHHHHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHH
Confidence 7 66788999999999987743 33343 2334555 4899999999999999999999888878888889999999999
Q ss_pred HHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhh-c-cCCCCCHHHHHHH
Q 004368 586 LIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE-E-WGDPWKEEFYFYM 663 (758)
Q Consensus 586 l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~-e-~g~p~~~~~~~~l 663 (758)
|++++++|++||+|+|+|+||++++.++.++|++|+|+|+.+|+.|+..+. ..|. . .|.|...+..+.+
T Consensus 575 l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~---------~~~~~~~~~~p~~~~~~~~~ 645 (740)
T 4a5s_A 575 FSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD---------SVYTERYMGLPTPEDNLDHY 645 (740)
T ss_dssp HHTSTTEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSB---------HHHHHHHHCCSSTTTTHHHH
T ss_pred HHhcCCcCCccEEEEEECHHHHHHHHHHHhCCCceeEEEEcCCccchHHhh---------hHHHHHHcCCCCccccHHHH
Confidence 999999999999999999999999999999999999999999999976431 1221 2 2655222233345
Q ss_pred HhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHH
Q 004368 664 KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 743 (758)
Q Consensus 664 ~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 743 (758)
...+|+.++++++.||+||+||++|.+||+.++.+++++|++++.++++++++ ++||+... .....+....+.+||
T Consensus 646 ~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~---~~~H~~~~-~~~~~~~~~~i~~fl 721 (740)
T 4a5s_A 646 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYT---DEDHGIAS-STAHQHIYTHMSHFI 721 (740)
T ss_dssp HHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEET---TCCTTCCS-HHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHhcCCCCcEEEEEcCCCCccCHHHHHHHHHHHHHCCCCeEEEEEC---CCCCcCCC-CccHHHHHHHHHHHH
Confidence 67899999999887559999999999999999999999999999998888887 99998632 222333445578999
Q ss_pred HHhcCCCCC
Q 004368 744 MRALSMLPS 752 (758)
Q Consensus 744 ~~~l~~~~~ 752 (758)
.++|+....
T Consensus 722 ~~~l~~~~~ 730 (740)
T 4a5s_A 722 KQCFSLPAA 730 (740)
T ss_dssp HHHTTCC--
T ss_pred HHHcCCCCC
Confidence 999986643
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=417.62 Aligned_cols=494 Identities=17% Similarity=0.130 Sum_probs=363.1
Q ss_pred EEeeEEECCCCCEEEEEEeC-CCCeEEEEEEEEC--CCCceeeccccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDT-KGDEIYTVYVIDI--ETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~-~G~e~~~l~v~dl--~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~ 267 (758)
.+..+.|||| .++|+.+. .|.+...||++++ +++........+ ...++||||| .++|++.... .+.+++
T Consensus 66 ~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~-~~~~~~s~dg~~~~~~s~~~~----~~~l~d 138 (582)
T 3o4h_A 66 SVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP-MRILSGVDTGEAVVFTGATED----RVALYA 138 (582)
T ss_dssp EECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCS-BEEEEEEECSSCEEEEEECSS----CEEEEE
T ss_pred ccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccccccCCCC-ceeeeeCCCCCeEEEEecCCC----CceEEE
Confidence 5678899999 68888875 6666789999999 665542212233 3347999999 7888765432 233557
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCC-cceEEEEEeCCCCCceEEeeccccce-eeEEeecCCEEEE
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK-ITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFI 345 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~ 345 (758)
+.++ +...+..... .++.|||||++|++.+.+. +...||++|+++++ .+.++...... ...|||||++|+
T Consensus 139 ~~~g--~~~~l~~~~~----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~~l~~~~~~~~~~~~SpDG~~l~- 210 (582)
T 3o4h_A 139 LDGG--GLRELARLPG----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LRVFDSGEGSFSSASISPGMKVTA- 210 (582)
T ss_dssp EETT--EEEEEEEESS----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CEEECCSSCEEEEEEECTTSCEEE-
T ss_pred ccCC--cEEEeecCCC----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ceEeecCCCccccceECCCCCEEE-
Confidence 7665 3344443332 4678999999999877653 33679999999887 77776554333 345999999998
Q ss_pred EEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeee----------EEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccc
Q 004368 346 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQD----------IQLFIDHLAVYEREGGLQKITTYRLPAVGEPLK 415 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~ 415 (758)
.+..+ ...+|+++|+++. ... ++... +..+.. +++++ .+++....++. +.+|.+ |+..
T Consensus 211 ~~~~~--~~~~i~~~d~~~~-~~~-~~~~~-~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~--~~l~~~---g~~~- 278 (582)
T 3o4h_A 211 GLETA--REARLVTVDPRDG-SVE-DLELP-SKDFSSYRPTAITWLGYLPDG-RLAVVARREGR--SAVFID---GERV- 278 (582)
T ss_dssp EEECS--SCEEEEEECTTTC-CEE-ECCCS-CSHHHHHCCSEEEEEEECTTS-CEEEEEEETTE--EEEEET---TEEE-
T ss_pred EccCC--CeeEEEEEcCCCC-cEE-EccCC-CcChhhhhhccccceeEcCCC-cEEEEEEcCCc--EEEEEE---CCee-
Confidence 44443 2468999999763 333 33322 222222 44445 77778888886 446665 4311
Q ss_pred cccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEEEEEeeecCCCC----CCCceeEEEEe
Q 004368 416 SLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFD----TNNYFTERKWA 491 (758)
Q Consensus 416 ~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 491 (758)
..+. ..+..++++ + +.++++.++..+|+++|.+|..+ +. ..+ .++ ......+.+.+
T Consensus 279 --------~~~~--~~v~~~~~s-d-g~~l~~~s~~~~p~~l~~~d~~~-~~--~~l-----~~~~~~~~~~~~~~~~~~ 338 (582)
T 3o4h_A 279 --------EAPQ--GNHGRVVLW-R-GKLVTSHTSLSTPPRIVSLPSGE-PL--LEG-----GLPEDLRRSIAGSRLVWV 338 (582)
T ss_dssp --------CCCS--SEEEEEEEE-T-TEEEEEEEETTEEEEEEEETTCC-EE--ECC-----CCCHHHHHTEEEEEEEEE
T ss_pred --------ccCC--CceEEEEec-C-CEEEEEEcCCCCCCeEEEEcCCC-ce--EEE-----ecCCccccccCcceEEEE
Confidence 1111 123334445 4 46678999999999999999865 42 211 122 22336788999
Q ss_pred eCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccC
Q 004368 492 SASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK 571 (758)
Q Consensus 492 ~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~ 571 (758)
++.||.+|+++++.|++. . .+.|+||++||+++......|....+.|+++||+|+.+|+||++++|..|........
T Consensus 339 ~~~~g~~i~~~~~~p~~~-~--~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~~~~ 415 (582)
T 3o4h_A 339 ESFDGSRVPTYVLESGRA-P--TPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDP 415 (582)
T ss_dssp ECTTSCEEEEEEEEETTS-C--SSEEEEEEECSSSSCCCCSSCCHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCT
T ss_pred ECCCCCEEEEEEEcCCCC-C--CCCcEEEEECCCcccccccccCHHHHHHHhCCCEEEEeccCCCCCCchhHHhhhhhhc
Confidence 999999999999999875 2 3789999999998877777888999999999999999999999999999999888888
Q ss_pred CcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhh--
Q 004368 572 KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE-- 649 (758)
Q Consensus 572 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~-- 649 (758)
....++|+.+++++|.+++.+| +|+++|+|+||++++.++.++|++|+++|+.+|+.|+.......... ...+.
T Consensus 416 ~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~ 491 (582)
T 3o4h_A 416 CGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAA--FRNFIEQ 491 (582)
T ss_dssp TTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCCCHHHHHHTCCHH--HHHHHHH
T ss_pred ccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCccCHHHHhhcccch--hHHHHHH
Confidence 8888999999999999998887 99999999999999999999999999999999999987654221110 01121
Q ss_pred ccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCCh
Q 004368 650 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGR 729 (758)
Q Consensus 650 e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~ 729 (758)
.+| .++ +.+..++|+.++.+++.| +|++||++|.+||+.++++++++|+.++.+.++++++ ++||+.. ..
T Consensus 492 ~~~--~~~---~~~~~~sp~~~~~~i~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~---~~gH~~~-~~ 561 (582)
T 3o4h_A 492 LTG--GSR---EIMRSRSPINHVDRIKEP-LALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIP---DAGHAIN-TM 561 (582)
T ss_dssp HTT--TCH---HHHHHTCGGGGGGGCCSC-EEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEET---TCCSSCC-BH
T ss_pred HcC--cCH---HHHHhcCHHHHHhcCCCC-EEEEecCCCCCcCHHHHHHHHHHHHhCCCCEEEEEEC---CCCCCCC-Ch
Confidence 123 333 345778999999999987 9999999999999999999999999999888888886 8999875 22
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 004368 730 FERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 730 ~~~~~~~~~~~~fl~~~l~~ 749 (758)
....+....+.+||.++|+.
T Consensus 562 ~~~~~~~~~i~~fl~~~l~~ 581 (582)
T 3o4h_A 562 EDAVKILLPAVFFLATQRER 581 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 33344455578999999864
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-44 Score=423.59 Aligned_cols=513 Identities=16% Similarity=0.194 Sum_probs=369.7
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCc------------------ceeEEEecCC-eEEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV------------------TASVEWAGNE-ALVYIT 253 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~------------------~~~~~wspDg-~l~y~~ 253 (758)
+..+.|||||++|||+.+. +|+++|+++|+....+..+. ...++||||| .|+|.+
T Consensus 154 ~~~~~~SPDG~~la~~~~~------~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~ 227 (741)
T 2ecf_A 154 ATDAKLSPKGGFVSFIRGR------NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR 227 (741)
T ss_dssp EEEEEECTTSSEEEEEETT------EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred cccccCCCCCCEEEEEeCC------cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence 6678999999999999752 79999999998766432221 2568999999 798887
Q ss_pred eCCCCC----------------------------CceEEEEEcCC-CCCCcEEEeee-cCCceeeEEEEcCCCcEEEEEe
Q 004368 254 MDEILR----------------------------PDKAWLHKLEA-DQSNDICLYHE-KDDIYSLGLQASESKKFLFIAS 303 (758)
Q Consensus 254 ~~~~~~----------------------------~~~v~~~~l~~-~~~~~~~v~~~-~~~~~~~~~~~S~Dg~~l~~~s 303 (758)
.+.... ...|+.+++.+ +. ...+... ........+.| |||++|++.+
T Consensus 228 ~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~ 304 (741)
T 2ecf_A 228 IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ--TQWIDLGKEQDIYLARVNW-RDPQHLSFQR 304 (741)
T ss_dssp EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC--CEEECCCSCSSEEEEEEEE-EETTEEEEEE
T ss_pred EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc--eEEecCCCCcceEEEEEEe-CCCCEEEEEE
Confidence 654211 12678888876 53 2333222 22334557889 9999999877
Q ss_pred cC--CcceEEEEEeCCCCCceEEeeccccc------eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCC
Q 004368 304 ES--KITRFVFYLDVSKPEELRVLTPRVVG------VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHR 375 (758)
Q Consensus 304 ~~--~~~~~l~~~d~~~~~~~~~l~~~~~~------~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~ 375 (758)
.+ .....|+++|+.+++ .+.+...... ....|+|||+ +++.++.++ ..+|+.+++++. ...+..+.
T Consensus 305 ~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g--~~~l~~~~~~~~--~~~l~~~~ 378 (741)
T 2ecf_A 305 QSRDQKKLDLVEVTLASNQ-QRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTG--FQHLYRIDSKGK--AAALTHGN 378 (741)
T ss_dssp EETTSSEEEEEEEETTTCC-EEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTS--SCEEEEECSSSC--EEESCCSS
T ss_pred ecccCCeEEEEEEECCCCc-eEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCC--ccEEEEEcCCCC--eeeeeecc
Confidence 53 345789999999887 5555433221 1345999999 666666652 478999987652 33354443
Q ss_pred CCce-eeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCC
Q 004368 376 ESVK-LQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTP 454 (758)
Q Consensus 376 ~~~~-~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P 454 (758)
.... +..++.+++.+++....++...+.+|+++.+|+.++.|+. .. .+..+.+++|++.+++.++++..|
T Consensus 379 ~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~------~~---~~~~~~~spdg~~l~~~~~~~~~p 449 (741)
T 2ecf_A 379 WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK------AP---GMHSASFARNASVYVDSWSNNSTP 449 (741)
T ss_dssp SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC------SC---SEEEEEECTTSSEEEEEEEETTEE
T ss_pred eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc------CC---CceEEEECCCCCEEEEEecCCCCC
Confidence 3321 1235666778888887766334445555543543322221 11 122356788999999999999999
Q ss_pred CEEEEEECCCCcEEEEEEeee-cC--CCCCC--Cc-eeEEEEeeCCCC-eEEEEEEEeeccccccCCCCCEEEEecCCCc
Q 004368 455 PSVYDYDMDMGISVLKKIETV-LG--GFDTN--NY-FTERKWASASDG-TQIPICIVYRKNLVKLDGSDPLLLYGYGSYE 527 (758)
Q Consensus 455 ~~i~~~d~~~~~~~~~~~~~~-~~--~~~~~--~~-~~~~~~~~s~dG-~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~ 527 (758)
+.+|.++..++..+.+..... .. .+... .+ ..+.+.+++.|| .+|+++++.|++. .++++.|+||++||+++
T Consensus 450 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~P~~~-~~~~~~p~vv~~hG~~~ 528 (741)
T 2ecf_A 450 PQIELFRANGEKIATLVENDLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAGF-DPAKRYPVAVYVYGGPA 528 (741)
T ss_dssp EEEEEEETTSCEEECSSCCCSSSTTSTTHHHHTTCCCEEEEEEECTTSSCEEEEEEECCSSC-CTTSCEEEEEECCCSTT
T ss_pred CeEEEEEcCCCeEEEeccCcccccccchhhhhccCCCcEEEEEEcCCCCEEEEEEEEeCCCC-CCCCCcCEEEEEcCCCC
Confidence 999999987654322211110 00 11111 33 578899999999 9999999999875 45567899999999877
Q ss_pred cCC-CCCCC-----hHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEE
Q 004368 528 ICN-DPAFN-----SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEG 601 (758)
Q Consensus 528 ~~~-~~~~~-----~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G 601 (758)
... ...|. .....|+++||+|+.+|+||+|++|..|........+...++|+.+++++|.+++.+|+++|+++|
T Consensus 529 ~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G 608 (741)
T 2ecf_A 529 SQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQG 608 (741)
T ss_dssp CCSCSSCCCCSHHHHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred cccccccccccchhHHHHHHHhCCCEEEEEecCCCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEE
Confidence 642 23454 467788899999999999999999999987766666677899999999999999989999999999
Q ss_pred eChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhh-hc-cCCCC-CHHHHHHHHhcCcccccCCCCCC
Q 004368 602 RSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW-EE-WGDPW-KEEFYFYMKSYSPVDNVKAQNYP 678 (758)
Q Consensus 602 ~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~-~e-~g~p~-~~~~~~~l~~~sp~~~i~~~~~P 678 (758)
+|+||++++.++.++|++|+++|+.+|+.|+..+. ..| .. .+.|. +++ .+...+|+.++.+++.|
T Consensus 609 ~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~P 676 (741)
T 2ecf_A 609 WSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLYD---------SHYTERYMDLPARNDA---GYREARVLTHIEGLRSP 676 (741)
T ss_dssp ETHHHHHHHHHHHHCTTTCSEEEEESCCCCGGGSB---------HHHHHHHHCCTGGGHH---HHHHHCSGGGGGGCCSC
T ss_pred EChHHHHHHHHHHhCCCceEEEEEcCCCcchhhhc---------cccchhhcCCcccChh---hhhhcCHHHHHhhCCCC
Confidence 99999999999999999999999999998864321 111 12 25553 233 34567999999988887
Q ss_pred eEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 679 HILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 679 ~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
+||+||++|.+|++.++.+++++|+..+.+.++++++ ++||+...... .+....+.+||.++|+
T Consensus 677 -~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~---~~~H~~~~~~~--~~~~~~i~~fl~~~l~ 740 (741)
T 2ecf_A 677 -LLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYP---GAKHGLSGADA--LHRYRVAEAFLGRCLK 740 (741)
T ss_dssp -EEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEET---TCCSSCCHHHH--HHHHHHHHHHHHHHHC
T ss_pred -EEEEccCCCCCCCHHHHHHHHHHHHHCCCceEEEEEC---CCCCCCCCCch--hHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999888888886 89998753322 3334457899999986
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-44 Score=422.13 Aligned_cols=524 Identities=13% Similarity=0.060 Sum_probs=362.0
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCc--------------------ceeEEEecCC-eEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV--------------------TASVEWAGNE-ALVY 251 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~--------------------~~~~~wspDg-~l~y 251 (758)
+..+.|||||++|||+.+ .+|+++|+++|+..+++..+. ...++||||| .|+|
T Consensus 112 ~~~~~~SPDG~~la~~~~------~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~ 185 (719)
T 1z68_A 112 IQYLCWSPVGSKLAYVYQ------NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY 185 (719)
T ss_dssp BCCEEECSSTTCEEEEET------TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred cccceECCCCCEEEEEEC------CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence 457899999999999964 279999999988765432221 1369999999 8999
Q ss_pred EEeCCCC-----------------------------CCceEEEEEcCCCCCC-cEEEee----ecCCceeeEEEEcCCCc
Q 004368 252 ITMDEIL-----------------------------RPDKAWLHKLEADQSN-DICLYH----EKDDIYSLGLQASESKK 297 (758)
Q Consensus 252 ~~~~~~~-----------------------------~~~~v~~~~l~~~~~~-~~~v~~----~~~~~~~~~~~~S~Dg~ 297 (758)
.+.+... ...+|+++++.++... ...+.. .........+.|||||+
T Consensus 186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~ 265 (719)
T 1z68_A 186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER 265 (719)
T ss_dssp EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE
T ss_pred EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe
Confidence 8865422 1125777777655210 011110 01233445789999987
Q ss_pred EEEEEecC-CcceEEEEEe----CCCCCceEEee----cc-ccce------eeEEeecCCEEEEEEcCCCCCCcEEEEEe
Q 004368 298 FLFIASES-KITRFVFYLD----VSKPEELRVLT----PR-VVGV------DTAASHRGNHFFITRRSDELFNSELLACP 361 (758)
Q Consensus 298 ~l~~~s~~-~~~~~l~~~d----~~~~~~~~~l~----~~-~~~~------~~~~s~dg~~l~~~s~~~~~~~~~L~~~~ 361 (758)
.++...++ ....+||++| +.+++ .+.+. .. ...+ ...|+|||+.+++.+... ....+|+.++
T Consensus 266 ~~~~~~~~~~~~~~l~~~d~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~g~~~l~~~~ 343 (719)
T 1z68_A 266 VCLQWLKRVQNVSVLSICDFREDWQTWD-CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK-DGYKHIHYIK 343 (719)
T ss_dssp EEEEEEESSTTEEEEEEEEECSSSSSEE-CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT-TSCEEEEEES
T ss_pred EEEEEeccccCeEEEEEEcccCCCCCCc-eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc-CCceEEEEEE
Confidence 65553333 3447899999 77665 33333 12 1122 345999999998865543 2367899999
Q ss_pred CCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEe----CCeeEEEEEEcCCCCC-ccccccCCceeeccCcccccCCCC
Q 004368 362 VDNTSETTVLIPHRESVKLQDIQLFIDHLAVYERE----GGLQKITTYRLPAVGE-PLKSLQGGKSVEFIDPVYSIDPSE 436 (758)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~l~v~~l~~~g~-~~~~l~~~~~i~~p~~~~~i~~~~ 436 (758)
+++. ....+.....+..-..+. +++.+++.... .+..+++.++++. |. ..+.++.. ++.....+....
T Consensus 344 ~~~~-~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~l~~~----~~~~~~~~~~~~ 416 (719)
T 1z68_A 344 DTVE-NAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS-YPPSKKCVTCH----LRKERCQYYTAS 416 (719)
T ss_dssp SCST-TCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS-SSCCEEESSTT----TTTTTBCBEEEE
T ss_pred CCCC-ceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC-CCCCceeccCc----cCCCCCceEEEE
Confidence 8763 334454433332211223 66788877765 4555666555532 21 11122110 111111222345
Q ss_pred cccCCcEEEEEEecCCCCCEEEEEECCCCcE-EEEEEeeec-CCCCCCCc-eeEEEEeeCCCCeEEEEEEEeeccccccC
Q 004368 437 SVFSSRILRFHYSSLRTPPSVYDYDMDMGIS-VLKKIETVL-GGFDTNNY-FTERKWASASDGTQIPICIVYRKNLVKLD 513 (758)
Q Consensus 437 ~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~-~~~~~~~~~-~~~~~~~~-~~~~~~~~s~dG~~i~~~l~~p~~~~~~~ 513 (758)
++++++.+++.++++..| .++.+|+.+++. .++..++.. ..++...+ ..+.+.+++.| .+|+++++.|++. +++
T Consensus 417 ~s~dg~~l~~~~s~~~~p-~~~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~P~~~-~~~ 493 (719)
T 1z68_A 417 FSDYAKYYALVCYGPGIP-ISTLHDGRTDQEIKILEENKELENALKNIQLPKEEIKKLEVDE-ITLWYKMILPPQF-DRS 493 (719)
T ss_dssp ECGGGSSEEEEECCBSSC-EEEEECSSSCCEEEEEECCHHHHHHTTSBCCCEEEEEEEEETT-EEEEEEEEECTTC-CSS
T ss_pred ECCCCCEEEEEcCCCCCC-eEEEEECCCCCEEEEeecchhhhhhhccccCCceEEEEEecCC-eEEEEEEEeCCCC-CCC
Confidence 677888999999999888 688999988873 333322211 12333333 56888999888 8999999999886 566
Q ss_pred CCCCEEEEecCCCccCC-CCCCCh-HHHHHH-HcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcC
Q 004368 514 GSDPLLLYGYGSYEICN-DPAFNS-SRLSLL-DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 590 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~-~~~~~~-~~~~l~-~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 590 (758)
++.|+||++||+++... ...|.. ....|+ ++||+|+.+|+||+|++|..|........+...++|+.+++++|.+++
T Consensus 494 ~~~p~vl~~hG~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~ 573 (719)
T 1z68_A 494 KKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMG 573 (719)
T ss_dssp SCEEEEEEECCCTTBCCCCCCCCCCHHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHHHTTS
T ss_pred CCccEEEEECCCCCcCcccccchhhHHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHHHhcC
Confidence 78899999999887653 334442 334454 689999999999999999999887777777778999999999999998
Q ss_pred CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhh--ccCCCCCHHHHHHHHhcCc
Q 004368 591 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE--EWGDPWKEEFYFYMKSYSP 668 (758)
Q Consensus 591 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~--e~g~p~~~~~~~~l~~~sp 668 (758)
.+|+++|+|+|+|+||++++.++.++|++|+++|+.+|+.|+..+. ..|. .+|.|...+..+.+...+|
T Consensus 574 ~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~---------~~~~~~~~g~~~~~~~~~~~~~~~~ 644 (719)
T 1z68_A 574 FIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYA---------SVYTERFMGLPTKDDNLEHYKNSTV 644 (719)
T ss_dssp CEEEEEEEEEEETHHHHHHHHHHTTSSSCCSEEEEESCCCCTTTSB---------HHHHHHHHCCSSTTTTHHHHHHTCS
T ss_pred CCCCceEEEEEECHHHHHHHHHHHhCCCceEEEEEcCCccChHHhc---------cccchhhcCCcccccchhhhhhCCH
Confidence 8999999999999999999999999999999999999998865321 1121 2366632222334567899
Q ss_pred ccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 669 VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 669 ~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
+.++.++++||+||+||++|.+||+.++.+++++|++.+.++++++++ ++||+.... ...+....+.+||.++|+
T Consensus 645 ~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~---~~gH~~~~~--~~~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 645 MARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYS---DQNHGLSGL--STNHLYTHMTHFLKQCFS 719 (719)
T ss_dssp GGGGGGGTTSEEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEET---TCCTTCCTH--HHHHHHHHHHHHHHHHHC
T ss_pred hHHHhcCCCCcEEEEEeCCCCCcCHHHHHHHHHHHHHCCCceEEEEEC---cCCCCCCcc--cHHHHHHHHHHHHHHhhC
Confidence 999999888669999999999999999999999999999888888886 899987322 223334457899999875
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-43 Score=413.75 Aligned_cols=510 Identities=15% Similarity=0.176 Sum_probs=363.3
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCC-----CceeeccccCc----------------ceeEEEecCC-eEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-----GTPVGKPLVGV----------------TASVEWAGNE-ALV 250 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~-----g~~~~~~~~~~----------------~~~~~wspDg-~l~ 250 (758)
+..++|||||++|||+.+ .+|+++|+++ |+....+..+. ...+.||||| .|+
T Consensus 123 ~~~~~~SpdG~~la~~~~------~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la 196 (706)
T 2z3z_A 123 TASLDFSPVGDRVAYVRN------HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLA 196 (706)
T ss_dssp CTTCEECTTSSEEEEEET------TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEE
T ss_pred ccCCcCCCCCCEEEEEEC------CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEE
Confidence 456799999999999743 3799999998 87765432221 2568999999 788
Q ss_pred EEEeCCC----------------------------CCCceEEEEEcCCCCCCcEEEeee-cCCceeeEEEEcCCCcEEEE
Q 004368 251 YITMDEI----------------------------LRPDKAWLHKLEADQSNDICLYHE-KDDIYSLGLQASESKKFLFI 301 (758)
Q Consensus 251 y~~~~~~----------------------------~~~~~v~~~~l~~~~~~~~~v~~~-~~~~~~~~~~~S~Dg~~l~~ 301 (758)
|.+.+.. ....+|+++++.++. ...+... ........+.|||||++|++
T Consensus 197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~ 274 (706)
T 2z3z_A 197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK--TVYLQTGEPKEKFLTNLSWSPDENILYV 274 (706)
T ss_dssp EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE--EEECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc--eEeeccCCCCceeEeeEEEECCCCEEEE
Confidence 8875432 123468888887662 2233322 22334457899999999998
Q ss_pred EecCC--cceEEEEEeCCCCCceEEeeccccc------eeeEEee--cCCEEEEEEcCCCCCCcEEEEEeCCCCCcceee
Q 004368 302 ASESK--ITRFVFYLDVSKPEELRVLTPRVVG------VDTAASH--RGNHFFITRRSDELFNSELLACPVDNTSETTVL 371 (758)
Q Consensus 302 ~s~~~--~~~~l~~~d~~~~~~~~~l~~~~~~------~~~~~s~--dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l 371 (758)
.+.+. ....|+++|+.+++..+.+...... ....|+| ||+ +++.++.++ ..+|+.++.++ .....+
T Consensus 275 ~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g--~~~l~~~~~~~-~~~~~l 350 (706)
T 2z3z_A 275 AEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDG--WNHLYLYDTTG-RLIRQV 350 (706)
T ss_dssp EEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTS--SCEEEEEETTS-CEEEEC
T ss_pred EEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCC--ccEEEEEECCC-CEEEec
Confidence 76543 3468999999987314444322111 1235899 887 445555552 57899998654 223334
Q ss_pred ecCCCCce-eeeEEEeCCEEEEEEEeCC--eeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEE
Q 004368 372 IPHRESVK-LQDIQLFIDHLAVYEREGG--LQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHY 448 (758)
Q Consensus 372 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g--~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~ 448 (758)
..+..... +..++++++.|++....++ ...++.+++. ++.++.++. .. .+..+.+++|++.+++.+
T Consensus 351 ~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~------~~---~~~~~~~spdg~~l~~~~ 419 (706)
T 2z3z_A 351 TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK--GGKTKDLTP------ES---GMHRTQLSPDGSAIIDIF 419 (706)
T ss_dssp CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT--CCCCEESCC------SS---SEEEEEECTTSSEEEEEE
T ss_pred CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC--CCCceeccC------CC---ceEEEEECCCCCEEEEEe
Confidence 44332221 1244555677887776655 3466666665 332322221 11 123356778999999999
Q ss_pred ecCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCc-eeEEEEeeCCCC-eEEEEEEEeeccccccCCCCCEEEEecCCC
Q 004368 449 SSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNY-FTERKWASASDG-TQIPICIVYRKNLVKLDGSDPLLLYGYGSY 526 (758)
Q Consensus 449 sS~~~P~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dG-~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~ 526 (758)
++...|.+++.+|+.+++..++.... .+....+ ..+.+.+++.|| .+++++++.|++. +++++.|+||++|||+
T Consensus 420 ~~~~~p~~i~l~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~-~~~~~~p~iv~~HGg~ 495 (706)
T 2z3z_A 420 QSPTVPRKVTVTNIGKGSHTLLEAKN---PDTGYAMPEIRTGTIMAADGQTPLYYKLTMPLHF-DPAKKYPVIVYVYGGP 495 (706)
T ss_dssp ECSSCSCEEEEEESSSCEEEEEECC---------CCCCEEEEEEECTTSSSEEEEEEECCTTC-CTTSCEEEEEECCCCT
T ss_pred cCCCCCcEEEEEECCCCeEeeccccc---hhhhcCCCCcEEEEEEcCCCCEEEEEEEEeCCCC-CCCCCccEEEEecCCC
Confidence 99999999999999888732222111 1221122 467888999999 8999999999886 5567789999999987
Q ss_pred ccCCC-CCCCh----HHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEE
Q 004368 527 EICND-PAFNS----SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEG 601 (758)
Q Consensus 527 ~~~~~-~~~~~----~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G 601 (758)
+.... ..|.. ..+.|+++||+|+.+|+||+|++|..|........+...++|+.+++++|.+++.+|+++++|+|
T Consensus 496 ~~~~~~~~~~~~~~~~~~~la~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G 575 (706)
T 2z3z_A 496 HAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHG 575 (706)
T ss_dssp TCCCCCSCC----CCHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred CceeeccccccCchHHHHHHHhCCcEEEEEecCCCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEE
Confidence 76532 34554 46788899999999999999999999988776677777889999999999999999999999999
Q ss_pred eChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhh-hc-cCCCC-CHHHHHHHHhcCcccccCCCCCC
Q 004368 602 RSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW-EE-WGDPW-KEEFYFYMKSYSPVDNVKAQNYP 678 (758)
Q Consensus 602 ~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~-~e-~g~p~-~~~~~~~l~~~sp~~~i~~~~~P 678 (758)
+|+||++++.++.++|++|+++|+.+|+.|+..+. ..+ .. .+.|. +++.+ ...+|...+.+++.|
T Consensus 576 ~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~P 643 (706)
T 2z3z_A 576 WSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYA---------IMYGERYFDAPQENPEGY---DAANLLKRAGDLKGR 643 (706)
T ss_dssp ETHHHHHHHHHHHHSTTTEEEEEEESCCCCGGGSB---------HHHHHHHHCCTTTCHHHH---HHHCGGGGGGGCCSE
T ss_pred EChHHHHHHHHHHhCCCcEEEEEEcCCccchHHHH---------hhhhhhhcCCcccChhhh---hhCCHhHhHHhCCCC
Confidence 99999999999999999999999999998865321 112 12 25563 44443 567898888888887
Q ss_pred eEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 004368 679 HILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 679 ~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 747 (758)
+||+||++|.+||+.++++++++|+..+.+.++++++ ++||....... .+....+.+||.++|
T Consensus 644 -~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~---~~gH~~~~~~~--~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 644 -LMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYP---SHEHNVMGPDR--VHLYETITRYFTDHL 706 (706)
T ss_dssp -EEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEET---TCCSSCCTTHH--HHHHHHHHHHHHHHC
T ss_pred -EEEEeeCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeC---CCCCCCCcccH--HHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999888888886 99998764422 233444789998875
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=420.93 Aligned_cols=522 Identities=12% Similarity=0.120 Sum_probs=358.5
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---c-----------------ceeEEEecCC-eEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---V-----------------TASVEWAGNE-ALVY 251 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~-----------------~~~~~wspDg-~l~y 251 (758)
+..+.|||||++|||..+ .+|+++|+++|+..+.+..+ + ...++||||| .|+|
T Consensus 116 ~~~~~~SPdG~~la~~~~------~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~ 189 (723)
T 1xfd_A 116 LQYAGWGPKGQQLIFIFE------NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY 189 (723)
T ss_dssp CSBCCBCSSTTCEEEEET------TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEE
T ss_pred ccccEECCCCCEEEEEEC------CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEE
Confidence 457899999999999986 27999999999876543221 1 1469999999 8998
Q ss_pred EEeCCCC-----------------------------CCceEEEEEcCCCCCCcEEEeeecC-----CceeeEEEEcCCCc
Q 004368 252 ITMDEIL-----------------------------RPDKAWLHKLEADQSNDICLYHEKD-----DIYSLGLQASESKK 297 (758)
Q Consensus 252 ~~~~~~~-----------------------------~~~~v~~~~l~~~~~~~~~v~~~~~-----~~~~~~~~~S~Dg~ 297 (758)
.+.+... ....|+++++.++.. ...+.... ......+.|||||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~l~~~~~~~~~~~~~~~~~~SpDg~ 267 (723)
T 1xfd_A 190 AAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPPDDPRMREYYITMVKWATSTK 267 (723)
T ss_dssp EEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred EEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce--eEEeeCCccCCCccceeEEEEEeCCCe
Confidence 8765321 112678888876632 12222211 23345688999999
Q ss_pred EEEEEecC-CcceEEEEEeCCCCCceEEeecc-ccc------eeeEEeecCCEEEEE-EcCCC--CCCcEEEEEe-CCCC
Q 004368 298 FLFIASES-KITRFVFYLDVSKPEELRVLTPR-VVG------VDTAASHRGNHFFIT-RRSDE--LFNSELLACP-VDNT 365 (758)
Q Consensus 298 ~l~~~s~~-~~~~~l~~~d~~~~~~~~~l~~~-~~~------~~~~~s~dg~~l~~~-s~~~~--~~~~~L~~~~-~~~~ 365 (758)
+|++.+++ .....|+++|+++++ ...+... ..+ ....|+|||++|++. +..++ ....+|+.++ ..+
T Consensus 268 ~l~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~- 345 (723)
T 1xfd_A 268 VAVTWLNRAQNVSILTLCDATTGV-CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN- 345 (723)
T ss_dssp EEEEEEETTSCEEEEEEEETTTCC-EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC-
T ss_pred EEEEEEcCCCCeEEEEEEeCCCCc-ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC-
Confidence 88766554 345789999999887 4444321 111 134599999999988 44442 1245899998 444
Q ss_pred Cc---ceeeecCCCCce-eeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCC-ccccccCCceeeccCcccccCCCCcccC
Q 004368 366 SE---TTVLIPHRESVK-LQDIQLFIDHLAVYEREGGLQKITTYRLPAVGE-PLKSLQGGKSVEFIDPVYSIDPSESVFS 440 (758)
Q Consensus 366 ~~---~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~-~~~~l~~~~~i~~p~~~~~i~~~~~~~d 440 (758)
+. ...+.....+.. ...++++++.|++....++...+.+|+++.++. ....++.. +. +...+..+.++++
T Consensus 346 ~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~----~~-~~~~~~~~~~spd 420 (723)
T 1xfd_A 346 SSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD----LV-ENCTYFSASFSHS 420 (723)
T ss_dssp SSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT----SS-SSCCCCEEEECTT
T ss_pred CCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc----cc-CCCCeEEEEECCC
Confidence 33 333443333221 234666677888777665222344556554343 22112110 00 1122344667889
Q ss_pred CcEEEEEEecCCCCCEEEEEECCCCcE-EEEEEeeec-CCCCCCCc-eeEEEEeeCCCCeEEEEEEEeeccccccCCCCC
Q 004368 441 SRILRFHYSSLRTPPSVYDYDMDMGIS-VLKKIETVL-GGFDTNNY-FTERKWASASDGTQIPICIVYRKNLVKLDGSDP 517 (758)
Q Consensus 441 ~~~l~~~~sS~~~P~~i~~~d~~~~~~-~~~~~~~~~-~~~~~~~~-~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P 517 (758)
++.+++.++++..|..++. +..+++. .++...... ..+....+ ..+.+.+++.|| +|+++++.|++. ..+++.|
T Consensus 421 g~~l~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~P~~~-~~~~~~p 497 (723)
T 1xfd_A 421 MDFFLLKCEGPGVPMVTVH-NTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDY-NLPMQILKPATF-TDTTHYP 497 (723)
T ss_dssp SSEEEEECCSSSSCCEEEE-ETTTCCEEEEEECCHHHHHHHHTSCCCBCCBCCEEETTE-EECCBEEBCSSC-CSSSCEE
T ss_pred CCEEEEEccCCCCCeEEEE-ECCCCCEEEEeccChhhhhhhhhccCCCceEEEEEcCCc-eEEEEEEeCCCC-CCCCccC
Confidence 9999999999999987664 7655542 222111100 01111122 457788888999 999999999886 5667899
Q ss_pred EEEEecCCCccCC-CCCCC--hHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 518 LLLYGYGSYEICN-DPAFN--SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 518 ~vl~~hGg~~~~~-~~~~~--~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
+||++||+++... ...|. .....|+++||+|+.+|+||+|++|..|........+...++|+.+++++|.+++.+|+
T Consensus 498 ~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~ 577 (723)
T 1xfd_A 498 LLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDR 577 (723)
T ss_dssp EEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEE
T ss_pred EEEEEcCCCCccccCccccccHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcCh
Confidence 9999999887642 23333 44556677899999999999999999988766666666789999999999999988999
Q ss_pred CcEEEEEeChhHHHHHHHHhhC----CCceeEEEEcCCccchhhccCCCCCCCChhhhh--ccCCCC-CHHHHHHHHhcC
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMR----PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE--EWGDPW-KEEFYFYMKSYS 667 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~--e~g~p~-~~~~~~~l~~~s 667 (758)
+||+|+|+|+||++++.++.++ |++|+++|+.+|+.|+..+. ..+. ..|.|. ..+ .+...+
T Consensus 578 ~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~---~~~~~~ 645 (723)
T 1xfd_A 578 TRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYA---------SAFSERYLGLHGLDNR---AYEMTK 645 (723)
T ss_dssp EEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSB---------HHHHHHHHCCCSSCCS---STTTTC
T ss_pred hhEEEEEECHHHHHHHHHHHhccccCCCeEEEEEEccCCcchHHhh---------hhccHhhcCCccCChh---HHHhcC
Confidence 9999999999999999999999 99999999999998865321 1111 124442 222 224567
Q ss_pred cccccCCCC-CCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 668 PVDNVKAQN-YPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 668 p~~~i~~~~-~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
|...+.+++ .| +||+||++|.+||+.++++++++|++++.+.++++++ ++||+... .....+....+.+||.++
T Consensus 646 ~~~~~~~~~~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~---~~~H~~~~-~~~~~~~~~~i~~fl~~~ 720 (723)
T 1xfd_A 646 VAHRVSALEEQQ-FLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYP---DESHYFTS-SSLKQHLYRSIINFFVEC 720 (723)
T ss_dssp THHHHTSCCSCE-EEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEET---TCCSSCCC-HHHHHHHHHHHHHHHTTT
T ss_pred hhhHHhhcCCCC-EEEEEeCCCCCcCHhHHHHHHHHHHHCCCCeEEEEEC---CCCccccc-CcchHHHHHHHHHHHHHH
Confidence 777888887 56 9999999999999999999999999999888888887 99998632 222233344578999988
Q ss_pred cCC
Q 004368 747 LSM 749 (758)
Q Consensus 747 l~~ 749 (758)
|++
T Consensus 721 l~~ 723 (723)
T 1xfd_A 721 FRI 723 (723)
T ss_dssp TCC
T ss_pred hcC
Confidence 864
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-25 Score=238.77 Aligned_cols=280 Identities=16% Similarity=0.036 Sum_probs=197.4
Q ss_pred EEEEEecCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEec
Q 004368 444 LRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGY 523 (758)
Q Consensus 444 l~~~~sS~~~P~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~h 523 (758)
+++..+++..|.++|.+|..+..............++...+.++++++++ ||.+|+++++.|++. ++.|+||++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-dg~~i~~~l~~p~~~----~~~P~vl~~h 159 (386)
T 2jbw_A 85 LLMSAALCAQYAQFLWFDERRQKGQARKVELYQKAAPLLSPPAERHELVV-DGIPMPVYVRIPEGP----GPHPAVIMLG 159 (386)
T ss_dssp HHHHHHHHHHHHHTTCCSTHHHHHHHHHHHHHHHHGGGSSSCEEEEEEEE-TTEEEEEEEECCSSS----CCEEEEEEEC
T ss_pred HHHHHHHhhceeeeeccCCCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEe-CCEEEEEEEEcCCCC----CCCCEEEEeC
Confidence 44556667777777776542110000001111112222345688999988 899999999888764 5789999988
Q ss_pred CCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeC
Q 004368 524 GSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRS 603 (758)
Q Consensus 524 Gg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S 603 (758)
|+.+. ... +......|+++||+|+.+|+||+|++. ..........+|+.+++++|.+++.+++++|+|+|+|
T Consensus 160 G~~~~-~~~-~~~~~~~l~~~G~~v~~~d~rG~G~s~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S 231 (386)
T 2jbw_A 160 GLEST-KEE-SFQMENLVLDRGMATATFDGPGQGEMF------EYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRS 231 (386)
T ss_dssp CSSCC-TTT-THHHHHHHHHTTCEEEEECCTTSGGGT------TTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEET
T ss_pred CCCcc-HHH-HHHHHHHHHhCCCEEEEECCCCCCCCC------CCCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEC
Confidence 85433 222 333477889999999999999988751 1122334445678999999999999999999999999
Q ss_pred hhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCCh--hhhhccCCCCCHHHH-HHHHhcCcccccCCCCCCeE
Q 004368 604 AGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTT--AEWEEWGDPWKEEFY-FYMKSYSPVDNVKAQNYPHI 680 (758)
Q Consensus 604 ~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~--~~~~e~g~p~~~~~~-~~l~~~sp~~~i~~~~~P~~ 680 (758)
+||++++.++.+ |++|+++|+. |+.|+..... ..+... .....+|.+...+.+ ..+..++|..++.++++| +
T Consensus 232 ~GG~la~~~a~~-~~~~~a~v~~-~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P-~ 306 (386)
T 2jbw_A 232 LGGNYALKSAAC-EPRLAACISW-GGFSDLDYWD--LETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACP-T 306 (386)
T ss_dssp HHHHHHHHHHHH-CTTCCEEEEE-SCCSCSTTGG--GSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSC-E
T ss_pred hHHHHHHHHHcC-CcceeEEEEe-ccCChHHHHH--hccHHHHHHHHHHhCCCCHHHHHHHHHHhCChhhhhcccCCC-E
Confidence 999999999998 8999999999 9988765431 111100 011235655445555 677889999899988988 9
Q ss_pred EEeccCCCCCCCChHHHHHHHHH-HhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCC
Q 004368 681 LVTAGLNDPRVMYSEPAKFVAKL-REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLP 751 (758)
Q Consensus 681 Li~~G~~D~~V~~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 751 (758)
||+||++|. |++.++.+++++| +. +.++++++ ++||......... ...+.+||.++|+...
T Consensus 307 Lii~G~~D~-v~~~~~~~l~~~l~~~---~~~~~~~~---~~gH~~~~~~~~~---~~~i~~fl~~~l~~~~ 368 (386)
T 2jbw_A 307 YILHGVHDE-VPLSFVDTVLELVPAE---HLNLVVEK---DGDHCCHNLGIRP---RLEMADWLYDVLVAGK 368 (386)
T ss_dssp EEEEETTSS-SCTHHHHHHHHHSCGG---GEEEEEET---TCCGGGGGGTTHH---HHHHHHHHHHHHTSSC
T ss_pred EEEECCCCC-CCHHHHHHHHHHhcCC---CcEEEEeC---CCCcCCccchHHH---HHHHHHHHHHhcCCcC
Confidence 999999999 9999999999998 64 34566665 8999753323232 3346899999998653
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=224.51 Aligned_cols=247 Identities=19% Similarity=0.166 Sum_probs=180.0
Q ss_pred CCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCc
Q 004368 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG 560 (758)
Q Consensus 481 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G 560 (758)
...+.++.+++++.||.+|+++++.|++. +++.|+||++||+.+.. .+......|+++||+|+.+|+||+|+++
T Consensus 63 ~~~~~~~~~~~~~~dg~~i~~~~~~P~~~---~~~~p~vv~~HG~g~~~---~~~~~~~~l~~~G~~v~~~d~rG~g~s~ 136 (337)
T 1vlq_A 63 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE---EEKLPCVVQYIGYNGGR---GFPHDWLFWPSMGYICFVMDTRGQGSGW 136 (337)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS---CSSEEEEEECCCTTCCC---CCGGGGCHHHHTTCEEEEECCTTCCCSS
T ss_pred CCCeEEEEEEEEcCCCCEEEEEEEecCCC---CCCccEEEEEcCCCCCC---CCchhhcchhhCCCEEEEecCCCCCCcc
Confidence 44667899999999999999999998763 35689999999965542 3444556888999999999999999654
Q ss_pred hh-----------------HHhcccccCC----cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCc
Q 004368 561 RQ-----------------WYENGKFLKK----KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL 619 (758)
Q Consensus 561 ~~-----------------~~~~~~~~~~----~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~ 619 (758)
.. |...+..... ...++|+.+++++|.+++.+|+++|+++|+|+||++++.++.++| .
T Consensus 137 ~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p-~ 215 (337)
T 1vlq_A 137 LKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-K 215 (337)
T ss_dssp SCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-S
T ss_pred cCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCC-C
Confidence 32 0000000000 146889999999999998899999999999999999999999998 5
Q ss_pred eeEEEEcCCccchhhccC--CCCCCCChhhhhcc--CCC-CCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCCh
Q 004368 620 FKAAVAAVPFVDVLTTML--DPTIPLTTAEWEEW--GDP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYS 694 (758)
Q Consensus 620 f~a~v~~~~~~d~~~~~~--~~~~~~~~~~~~e~--g~p-~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~ 694 (758)
++++|+.+|+++....+. ....++ ..+.++ +.+ ...+.+..+..++|...+.+++.| +||++|++|..||+.
T Consensus 216 v~~~vl~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~lii~G~~D~~~p~~ 292 (337)
T 1vlq_A 216 AKALLCDVPFLCHFRRAVQLVDTHPY--AEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIP-ALFSVGLMDNICPPS 292 (337)
T ss_dssp CCEEEEESCCSCCHHHHHHHCCCTTH--HHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSC-EEEEEETTCSSSCHH
T ss_pred ccEEEECCCcccCHHHHHhcCCCcch--HHHHHHHHhCchhHHHHHHhhhhccHHHHHHHcCCC-EEEEeeCCCCCCCch
Confidence 899999998655332211 111111 111122 234 234556667778898888888877 999999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 695 EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 695 ~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
++.+++++|+. +.++++++ ++||... ... ....+++||.++|+
T Consensus 293 ~~~~~~~~l~~---~~~~~~~~---~~gH~~~--~~~---~~~~~~~fl~~~l~ 335 (337)
T 1vlq_A 293 TVFAAYNYYAG---PKEIRIYP---YNNHEGG--GSF---QAVEQVKFLKKLFE 335 (337)
T ss_dssp HHHHHHHHCCS---SEEEEEET---TCCTTTT--HHH---HHHHHHHHHHHHHC
T ss_pred hHHHHHHhcCC---CcEEEEcC---CCCCCCc--chh---hHHHHHHHHHHHHh
Confidence 99999998864 35566665 8999752 222 23446899999885
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=208.37 Aligned_cols=216 Identities=18% Similarity=0.124 Sum_probs=140.0
Q ss_pred eeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHH
Q 004368 485 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 564 (758)
Q Consensus 485 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~ 564 (758)
+.|+.+....||.+|+++++.|++. ++.|+||++||+.+....+.+...++.|+++||+|+.+|+||+|+.+....
T Consensus 29 ~~e~~~~~~~dG~~i~g~l~~P~~~----~~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~~~~ 104 (259)
T 4ao6_A 29 VQERGFSLEVDGRTVPGVYWSPAEG----SSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQA 104 (259)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESSS----CCSEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCCC---------
T ss_pred ceEEEEEEeeCCeEEEEEEEeCCCC----CCCCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccCCCCCCCCccc
Confidence 3444444567999999999999765 567999999998776555666677889999999999999999998765433
Q ss_pred hcccccC---------------CcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 565 ENGKFLK---------------KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 565 ~~~~~~~---------------~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
....... ....+.|..+++++|... +|+++|+++|+|+||+++..++...|+ ++|+|+..+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~pr-i~Aav~~~~~ 181 (259)
T 4ao6_A 105 GREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKR-IKVALLGLMG 181 (259)
T ss_dssp ----CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCTT-EEEEEEESCC
T ss_pred ccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCCc-eEEEEEeccc
Confidence 2111100 012345777788888654 688999999999999999999999885 5555544432
Q ss_pred cchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCC
Q 004368 630 VDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 709 (758)
Q Consensus 630 ~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~ 709 (758)
.+... ..++...+.++++| +||+||++|++||+.++++++++|... +
T Consensus 182 ~~~~~------------------------------~~~~~~~a~~i~~P-~Li~hG~~D~~vp~~~~~~l~~al~~~--~ 228 (259)
T 4ao6_A 182 VEGVN------------------------------GEDLVRLAPQVTCP-VRYLLQWDDELVSLQSGLELFGKLGTK--Q 228 (259)
T ss_dssp TTSTT------------------------------HHHHHHHGGGCCSC-EEEEEETTCSSSCHHHHHHHHHHCCCS--S
T ss_pred ccccc------------------------------ccchhhhhccCCCC-EEEEecCCCCCCCHHHHHHHHHHhCCC--C
Confidence 21100 11233345567788 999999999999999999999988432 2
Q ss_pred CceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 710 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 710 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
.+++++ .++|.. ..+.+.. ...++||.++|+
T Consensus 229 k~l~~~----~G~H~~-~p~~e~~---~~~~~fl~~hLk 259 (259)
T 4ao6_A 229 KTLHVN----PGKHSA-VPTWEMF---AGTVDYLDQRLK 259 (259)
T ss_dssp EEEEEE----SSCTTC-CCHHHHT---HHHHHHHHHHCC
T ss_pred eEEEEe----CCCCCC-cCHHHHH---HHHHHHHHHhcC
Confidence 334444 357753 2333333 346899999985
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-22 Score=201.06 Aligned_cols=225 Identities=16% Similarity=0.153 Sum_probs=163.8
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchh
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~ 562 (758)
++..+.+.+++ +|..++++++.|++. .++.|+||++||..+.. ..+......|+++||.|+++|+||.|+....
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~p~~~---~~~~p~vv~~HG~~g~~--~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~~ 76 (241)
T 3f67_A 3 AIIAGETSIPS-QGENMPAYHARPKNA---DGPLPIVIVVQEIFGVH--EHIRDLCRRLAQEGYLAIAPELYFRQGDPNE 76 (241)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEETTC---CSCEEEEEEECCTTCSC--HHHHHHHHHHHHTTCEEEEECTTTTTCCGGG
T ss_pred cceeeeEEEec-CCcceEEEEecCCCC---CCCCCEEEEEcCcCccC--HHHHHHHHHHHHCCcEEEEecccccCCCCCc
Confidence 45667888888 889999999988754 35689999999955432 3345556788899999999999998776543
Q ss_pred HHhccc-------ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhc
Q 004368 563 WYENGK-------FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 635 (758)
Q Consensus 563 ~~~~~~-------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~ 635 (758)
+..... ........+|+.+++++|.+++ +|+++|+++|+|+||.+++.++.++|+ ++++|+..+.....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~~~-- 152 (241)
T 3f67_A 77 YHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLVGE-- 152 (241)
T ss_dssp CCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCSCC--
T ss_pred hhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEeccccCC--
Confidence 321111 0111245789999999999987 889999999999999999999999998 66666655532100
Q ss_pred cCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEE
Q 004368 636 MLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 715 (758)
Q Consensus 636 ~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 715 (758)
. .. +...+|...+.+++.| +|+++|++|..||+.++.+++++|++.+.+.+++++
T Consensus 153 -----~-------~~------------~~~~~~~~~~~~~~~P-~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ 207 (241)
T 3f67_A 153 -----K-------SL------------NSPKHPVDIAVDLNAP-VLGLYGAKDASIPQDTVETMRQALRAANATAEIVVY 207 (241)
T ss_dssp -----C-------CS------------SSCCCHHHHGGGCCSC-EEEEEETTCTTSCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred -----C-------cc------------CCccCHHHhhhhcCCC-EEEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 0 00 1123455555666777 999999999999999999999999998888877777
Q ss_pred EecCCCCCCCCCC------hHHHHHHHHHHHHHHHH
Q 004368 716 KCELGAGHFSKSG------RFERLREAAFTYTFLMR 745 (758)
Q Consensus 716 ~~~~~~gH~~~~~------~~~~~~~~~~~~~fl~~ 745 (758)
+ +++|++... .....+....+.+||.+
T Consensus 208 ~---~~~H~~~~~~~~~~~~~~~~~~~~~~~~fl~~ 240 (241)
T 3f67_A 208 P---EADHAFNADYRASYHEESAKDGWQRMLAWFAQ 240 (241)
T ss_dssp T---TCCTTTTCTTSTTCCHHHHHHHHHHHHHHHTT
T ss_pred C---CCCcceecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 6 899987421 22223334456778764
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-22 Score=204.26 Aligned_cols=239 Identities=13% Similarity=0.087 Sum_probs=169.9
Q ss_pred EEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCcc-CCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcc
Q 004368 489 KWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG 567 (758)
Q Consensus 489 ~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~ 567 (758)
..+.+.+|..+.+++..|... ..+++.|+||++|||... .....+......|+++||.|+.+|+||+|+... +
T Consensus 17 ~~~~~~~g~~l~~~~~~~~~~-~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~-~---- 90 (276)
T 3hxk_A 17 STFSLNDTAWVDFYQLQNPRQ-NENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGTN-Y---- 90 (276)
T ss_dssp EECCCBTTBEEEEECCCC-------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCCC-S----
T ss_pred ccccCCCCeEEEEEEeCCccc-ccCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcCC-C----
Confidence 456677898888775544432 234678999999996533 233345556678889999999999999876331 0
Q ss_pred cccCCcChHhHHHHHHHHHHHcC---CCCCCcEEEEEeChhHHHHHHHHhh-CCCceeEEEEcCCccchhhccCCCCCCC
Q 004368 568 KFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNM-RPDLFKAAVAAVPFVDVLTTMLDPTIPL 643 (758)
Q Consensus 568 ~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~~~~d~~~~~~~~~~~~ 643 (758)
......+.|+.++++++.++. .+|+++|+++|+|+||++++.++.+ .++.++++|+.+|++++...... .+.
T Consensus 91 --~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~~--~~~ 166 (276)
T 3hxk_A 91 --NFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPS--DLS 166 (276)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCSS--SSS
T ss_pred --CcCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhCCc--chh
Confidence 111245689999999998864 3789999999999999999999988 78899999999999886543211 100
Q ss_pred ChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCC
Q 004368 644 TTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGH 723 (758)
Q Consensus 644 ~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH 723 (758)
+..+- +.. . ..++|...+.++..| +||+||++|..||+.++.+++++|++.+.++++++++ ++||
T Consensus 167 ----~~~~~-~~~-----~-~~~~~~~~~~~~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~---~~~H 231 (276)
T 3hxk_A 167 ----HFNFE-IEN-----I-SEYNISEKVTSSTPP-TFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFE---SGPH 231 (276)
T ss_dssp ----SSCCC-CSC-----C-GGGBTTTTCCTTSCC-EEEEEETTCSSSCTHHHHHHHHHHHTTTCCEEEEEES---CCCT
T ss_pred ----hhhcC-chh-----h-hhCChhhccccCCCC-EEEEecCCCceeChHHHHHHHHHHHHcCCCeEEEEEC---CCCC
Confidence 11111 111 0 356788888887777 9999999999999999999999999998888888886 8999
Q ss_pred CCCCChH-----------HHHHHHHHHHHHHHHhcCCCCC
Q 004368 724 FSKSGRF-----------ERLREAAFTYTFLMRALSMLPS 752 (758)
Q Consensus 724 ~~~~~~~-----------~~~~~~~~~~~fl~~~l~~~~~ 752 (758)
++..... ...+......+||.++......
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~ 271 (276)
T 3hxk_A 232 GVSLANRTTAPSDAYCLPSVHRWVSWASDWLERQIKNLEH 271 (276)
T ss_dssp TCTTCSTTSCSSSTTCCHHHHTHHHHHHHHHHHHHHTTC-
T ss_pred CccccCccccccccccCchHHHHHHHHHHHHHhCcccccc
Confidence 7643211 2223334467899988765544
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.9e-23 Score=218.63 Aligned_cols=291 Identities=14% Similarity=0.056 Sum_probs=171.4
Q ss_pred CCcEEEEEEecCCCCCEEEEEECCCCcE-EEEEEeeecCCCCC---CCceeEEEEeeCCCCeEEEEEEEeeccccccCCC
Q 004368 440 SSRILRFHYSSLRTPPSVYDYDMDMGIS-VLKKIETVLGGFDT---NNYFTERKWASASDGTQIPICIVYRKNLVKLDGS 515 (758)
Q Consensus 440 d~~~l~~~~sS~~~P~~i~~~d~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~ 515 (758)
+.+.+.|.+.++..|...++++.. |+. ++..........++ .++..+.+.+.+ +..+++.++.|++....+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~r~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~~P~~~~~~~~~ 82 (338)
T 2o7r_A 6 LETTGSSDPNTNLLKYLPIVLNPD-RTITRPIQIPSTAASPDPTSSSPVLTKDLALNP--LHNTFVRLFLPRHALYNSAK 82 (338)
T ss_dssp ------------CTTTCSCEECTT-SCEECCSCCCBCCCCCCTTSSCSEEEEEEEEET--TTTEEEEEEEEGGGGGSSCC
T ss_pred CCCceeeccCcccccccceEECCC-CeEEecCCCCCCCCCCCcccCCCEEEEEEEecC--CCCeEEEEEeCCCCCcCCCC
Confidence 455677788888888777777653 332 11111112222232 456788888876 44577777788752023467
Q ss_pred CCEEEEecCCCccCCCCC---CChHHHHHH-HcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcC-
Q 004368 516 DPLLLYGYGSYEICNDPA---FNSSRLSLL-DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC- 590 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~---~~~~~~~l~-~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~- 590 (758)
.|+||++|||........ |...+..|+ ++||+|+.+|+||+++.. ....++|+.++++||.++.
T Consensus 83 ~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~~~-----------~~~~~~d~~~~~~~l~~~~~ 151 (338)
T 2o7r_A 83 LPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAPEHR-----------LPAAYDDAMEALQWIKDSRD 151 (338)
T ss_dssp EEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCTTTTC-----------TTHHHHHHHHHHHHHHTCCC
T ss_pred ceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCCCCCC-----------CchHHHHHHHHHHHHHhCCc
Confidence 899999999764433322 555567787 789999999999987642 2356799999999999863
Q ss_pred -----CCCCCcEEEEEeChhHHHHHHHHhhCCC--------ceeEEEEcCCccchhhccC----CCCCCC-Chh----hh
Q 004368 591 -----YCTKEKLCIEGRSAGGLLIGAVLNMRPD--------LFKAAVAAVPFVDVLTTML----DPTIPL-TTA----EW 648 (758)
Q Consensus 591 -----~~d~~~i~i~G~S~GG~l~~~~~~~~p~--------~f~a~v~~~~~~d~~~~~~----~~~~~~-~~~----~~ 648 (758)
.+|+++++|+|+|+||+++..++.++|+ +++++|+.+|+.+...... ....+. ... .|
T Consensus 152 ~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
T 2o7r_A 152 EWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTGSELRLANDSRLPTFVLDLIW 231 (338)
T ss_dssp HHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCCSSCCHHHHHTTTCSSSCHHHHHHHH
T ss_pred chhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCCCcCChhhhccCCCcccCHHHHHHHH
Confidence 2677999999999999999999999888 8999999999877432110 000000 000 00
Q ss_pred hcc---CCCCCHHHHHHHHhcCcccccCCC-CCC-eEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCC
Q 004368 649 EEW---GDPWKEEFYFYMKSYSPVDNVKAQ-NYP-HILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGH 723 (758)
Q Consensus 649 ~e~---g~p~~~~~~~~l~~~sp~~~i~~~-~~P-~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH 723 (758)
..+ +...+......+...+|+.++.++ +.| |+||++|++|..|+ ++.+++++|++.+.++++++++ ++||
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~Lvi~G~~D~~~~--~~~~~~~~l~~~~~~~~~~~~~---g~gH 306 (338)
T 2o7r_A 232 ELSLPMGADRDHEYCNPTAESEPLYSFDKIRSLGWRVMVVGCHGDPMID--RQMELAERLEKKGVDVVAQFDV---GGYH 306 (338)
T ss_dssp HHHSCTTCCTTSTTTCCC----CCTHHHHHHHHTCEEEEEEETTSTTHH--HHHHHHHHHHHTTCEEEEEEES---SCCT
T ss_pred HHhCCCCCCCCCcccCCCCCCcccccHhhhcCCCCCEEEEECCCCcchH--HHHHHHHHHHHCCCcEEEEEEC---CCce
Confidence 111 100000000000001111111111 133 59999999999987 6788999999988877777776 8999
Q ss_pred CCCCC-hHHHHHHHHHHHHHHHHhcCC
Q 004368 724 FSKSG-RFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 724 ~~~~~-~~~~~~~~~~~~~fl~~~l~~ 749 (758)
++... .....+....+.+||.++++.
T Consensus 307 ~~~~~~~~~~~~~~~~i~~Fl~~~~~~ 333 (338)
T 2o7r_A 307 AVKLEDPEKAKQFFVILKKFVVDSCTT 333 (338)
T ss_dssp TGGGTCHHHHHHHHHHHHHHHC-----
T ss_pred EEeccChHHHHHHHHHHHHHHHhhccc
Confidence 76432 222223344568899887753
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=225.92 Aligned_cols=255 Identities=16% Similarity=0.187 Sum_probs=178.8
Q ss_pred CCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCC-----C-CCC----ChHHHHHHHcCcEEEE
Q 004368 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN-----D-PAF----NSSRLSLLDRGFIFAI 550 (758)
Q Consensus 481 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~-----~-~~~----~~~~~~l~~~G~~v~~ 550 (758)
...|..+.+.+++.||.+|.++++.|++. ++.|+||++|| ++... . ..| ....+.|+++||+|+.
T Consensus 20 ~~~~~~~~v~i~~~DG~~L~~~~~~P~~~----~~~P~vl~~hg-yg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~ 94 (615)
T 1mpx_A 20 SNDYIKREVMIPMRDGVKLHTVIVLPKGA----KNAPIVLTRTP-YDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVF 94 (615)
T ss_dssp TCSEEEEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEES-SCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEE
T ss_pred cCCCEEEEEEEECCCCCEEEEEEEeCCCC----CCeeEEEEEcC-CCCccccccccccccccccchhHHHHHhCCeEEEE
Confidence 34567788999999999999999888753 56899999996 33321 1 111 1111789999999999
Q ss_pred EecCCCCCCchhHHhccc-----ccCCcChHhHHHHHHHHHHHc-CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEE
Q 004368 551 AQIRGGGELGRQWYENGK-----FLKKKNTFTDFIACAEYLIKN-CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAV 624 (758)
Q Consensus 551 ~~~RG~g~~G~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v 624 (758)
+|+||+|+++..+..... ..++....+|+.++++||.++ ++.| .||+++|+||||+++++++.++|+.++|+|
T Consensus 95 ~D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v 173 (615)
T 1mpx_A 95 QDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAV 173 (615)
T ss_dssp EECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEE
T ss_pred ECCCCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEE
Confidence 999999998876643311 122227789999999999998 7876 599999999999999999988899999999
Q ss_pred EcCCccchhh-c-cCCCCC-CCC----------------------hhhh------------------------hcc-CCC
Q 004368 625 AAVPFVDVLT-T-MLDPTI-PLT----------------------TAEW------------------------EEW-GDP 654 (758)
Q Consensus 625 ~~~~~~d~~~-~-~~~~~~-~~~----------------------~~~~------------------------~e~-g~p 654 (758)
+.+|+.|+.. . ...... .+. ...| .++ ..+
T Consensus 174 ~~~~~~d~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 253 (615)
T 1mpx_A 174 PESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHA 253 (615)
T ss_dssp EESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTC
T ss_pred ecCCccccccccccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCC
Confidence 9999999533 1 100000 000 0000 000 111
Q ss_pred CCHHHHHHHHhcCcccccCC--CCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCC---CceEEEEecCCCCCCCCC--
Q 004368 655 WKEEFYFYMKSYSPVDNVKA--QNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD---DNILLFKCELGAGHFSKS-- 727 (758)
Q Consensus 655 ~~~~~~~~l~~~sp~~~i~~--~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~gH~~~~-- 727 (758)
... +++++.||..++++ +++| +|++||.+|.+ ++.++.+++++|++++.+ .++++.+ .+|+...
T Consensus 254 ~~d---~~w~~~Sp~~~~~~~~I~~P-~Lii~G~~D~~-~~~~~~~~~~aL~~~g~p~~~~~lvigp----~~H~~~~~~ 324 (615)
T 1mpx_A 254 AYD---AFWQEQALDKVMARTPLKVP-TMWLQGLWDQE-DMWGAIHSYAAMEPRDKRNTLNYLVMGP----WRHSQVNYD 324 (615)
T ss_dssp SSC---HHHHTTCHHHHHHTSCCCSC-EEEEEETTCSS-CSSHHHHHHHHHGGGCTTSSSEEEEEES----CCTTGGGSC
T ss_pred CcC---hhhhhcChhhhhhccCCCCC-EEEeecccCcc-ccccHHHHHHHHHhhcCCCcCCEEEECC----CCCCCcccc
Confidence 111 34567899988888 9998 99999999998 889999999999998754 4555554 3675410
Q ss_pred ----------ChHHHHHHHHHHHHHHHHhcCCC
Q 004368 728 ----------GRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 728 ----------~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
...........+++||.++|+..
T Consensus 325 ~~~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 357 (615)
T 1mpx_A 325 GSALGALNFEGDTARQFRHDVLRPFFDQYLVDG 357 (615)
T ss_dssp CSEETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred ccccCccccCcccchhhhhhHHHHHHHHHhcCC
Confidence 01111111334689999999865
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-21 Score=198.18 Aligned_cols=235 Identities=11% Similarity=0.093 Sum_probs=163.1
Q ss_pred eeEEEEeeCCCCeEEEEEEEeecccc--ccCCCCCEEEEecCCCcc-CCCCCCChHHHHHHHcCcEEEEEecCCCCCCch
Q 004368 485 FTERKWASASDGTQIPICIVYRKNLV--KLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR 561 (758)
Q Consensus 485 ~~~~~~~~s~dG~~i~~~l~~p~~~~--~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~ 561 (758)
..+.+.+. .+|..+++.+++|+... ...++.|+||++|||... .....|...+..|+++||.|+.+|+||+|+.+.
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~ 81 (277)
T 3bxp_A 3 QVEQRTLN-TAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQS 81 (277)
T ss_dssp EEEEEEEC-STTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCCSTTTCC
T ss_pred ceEEEEec-cCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEecccCCCCCc
Confidence 34566664 57778999989887310 234678999999996433 223345556678888999999999999774332
Q ss_pred hHHhcccccCCcChHhHHHHHHHHHHHcC---CCCCCcEEEEEeChhHHHHHHHHhhC--------------CCceeEEE
Q 004368 562 QWYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMR--------------PDLFKAAV 624 (758)
Q Consensus 562 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--------------p~~f~a~v 624 (758)
.....+.|+.+++++|.+.. .+|+++|+++|+|+||++++.++.++ |..++++|
T Consensus 82 ---------~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~v 152 (277)
T 3bxp_A 82 ---------VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAII 152 (277)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSEEE
T ss_pred ---------cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCEEE
Confidence 12345789999999998762 26788999999999999999999885 77899999
Q ss_pred EcCCccchhhccCCCCCCCChhhhh-ccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHH
Q 004368 625 AAVPFVDVLTTMLDPTIPLTTAEWE-EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKL 703 (758)
Q Consensus 625 ~~~~~~d~~~~~~~~~~~~~~~~~~-e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L 703 (758)
+.+|+.|+...+ ... ..+. .+- ......+|...+.+...| +||+||++|..||+.++.+++++|
T Consensus 153 ~~~p~~~~~~~~-----~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~P-~lii~G~~D~~vp~~~~~~~~~~l 217 (277)
T 3bxp_A 153 LGYPVIDLTAGF-----PTT-SAARNQIT--------TDARLWAAQRLVTPASKP-AFVWQTATDESVPPINSLKYVQAM 217 (277)
T ss_dssp EESCCCBTTSSS-----SSS-HHHHHHHC--------SCGGGSBGGGGCCTTSCC-EEEEECTTCCCSCTHHHHHHHHHH
T ss_pred EeCCcccCCCCC-----CCc-cccchhcc--------chhhhcCHhhccccCCCC-EEEEeeCCCCccChHHHHHHHHHH
Confidence 999998754221 000 0011 110 012356777777776666 999999999999999999999999
Q ss_pred HhcCCCCceEEEEecCCCCCCCCCCh-------------HHHHHHHHHHHHHHHHhc
Q 004368 704 REMKTDDNILLFKCELGAGHFSKSGR-------------FERLREAAFTYTFLMRAL 747 (758)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~gH~~~~~~-------------~~~~~~~~~~~~fl~~~l 747 (758)
++.+.++++++++ +++|.+.... ....+....+.+||.++.
T Consensus 218 ~~~~~~~~~~~~~---~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 271 (277)
T 3bxp_A 218 LQHQVATAYHLFG---SGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQG 271 (277)
T ss_dssp HHTTCCEEEEECC---CC----------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCeEEEEEeC---CCCcccccccccccCccccccccchHHHHHHHHHHHHHhcc
Confidence 9998887777776 8999653221 112333445678998764
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-21 Score=203.35 Aligned_cols=236 Identities=14% Similarity=0.090 Sum_probs=166.7
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccC-CCCCCChHHHHHHH-cCcEEEEEecCCCCCCc
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC-NDPAFNSSRLSLLD-RGFIFAIAQIRGGGELG 560 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G 560 (758)
.+..+.+++++.|| .|++.+++|++. +.|+||++|||.... ....+...+..|++ .||+|+.+|+|++++..
T Consensus 60 ~~~~~~~~~~~~~g-~i~~~~~~p~~~-----~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~~ 133 (326)
T 3ga7_A 60 SMTTRTCAVPTPYG-DVTTRLYSPQPT-----SQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQAR 133 (326)
T ss_dssp CCEEEEEEECCTTS-CEEEEEEESSSS-----CSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTSC
T ss_pred CcceEEEEeecCCC-CeEEEEEeCCCC-----CCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCCC
Confidence 45568999999999 799999988754 239999999976332 33345555667777 79999999999987653
Q ss_pred hhHHhcccccCCcChHhHHHHHHHHHHHcC---CCCCCcEEEEEeChhHHHHHHHHhhCCCc------eeEEEEcCCccc
Q 004368 561 RQWYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMRPDL------FKAAVAAVPFVD 631 (758)
Q Consensus 561 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~------f~a~v~~~~~~d 631 (758)
. ...++|+.++++|+.++. .+|++||+|+|+|+||++++.++.+.|+. ++++|+.+|+.+
T Consensus 134 ~-----------~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~~~ 202 (326)
T 3ga7_A 134 Y-----------PQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYG 202 (326)
T ss_dssp T-----------THHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCCCS
T ss_pred C-----------CcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEeccccc
Confidence 2 345689999999998874 57999999999999999999999887764 899999999877
Q ss_pred hhhccC----CCCC-CCChhhh----hcc-CCCCCHHHHHHHHhcCccc-----ccCCCCCCeEEEeccCCCCCCCChHH
Q 004368 632 VLTTML----DPTI-PLTTAEW----EEW-GDPWKEEFYFYMKSYSPVD-----NVKAQNYPHILVTAGLNDPRVMYSEP 696 (758)
Q Consensus 632 ~~~~~~----~~~~-~~~~~~~----~e~-g~p~~~~~~~~l~~~sp~~-----~i~~~~~P~~Li~~G~~D~~V~~~~~ 696 (758)
...... .... .+..... ..| +... ...+|+. .+.+ ..||+||+||++|+.| .++
T Consensus 203 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~P~li~~G~~D~~~--~~~ 271 (326)
T 3ga7_A 203 LQDSVSRRLFGGAWDGLTREDLDMYEKAYLRNDE--------DRESPWYCLFNNDLTR-DVPPCFIASAEFDPLI--DDS 271 (326)
T ss_dssp CSCCHHHHHCCCTTTTCCHHHHHHHHHHHCSSGG--------GGGCTTTSGGGSCCSS-CCCCEEEEEETTCTTH--HHH
T ss_pred cCCChhHhhhcCCCCCCCHHHHHHHHHHhCCCCC--------ccCCcccCCCcchhhc-CCCCEEEEecCcCcCH--HHH
Confidence 532110 0000 0111000 001 1000 1123332 2222 3556999999999998 499
Q ss_pred HHHHHHHHhcCCCCceEEEEecCCCCCCCCC---ChHHHHHHHHHHHHHHHHhcCC
Q 004368 697 AKFVAKLREMKTDDNILLFKCELGAGHFSKS---GRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 697 ~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~---~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
.+++++|+++|.++++++++ +.+|++.. ......+...++.+||.++|+.
T Consensus 272 ~~~~~~l~~~g~~~~~~~~~---g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l~~ 324 (326)
T 3ga7_A 272 RLLHQTLQAHQQPCEYKMYP---GTLHAFLHYSRMMTIADDALQDGARFFMARMKT 324 (326)
T ss_dssp HHHHHHHHHTTCCEEEEEET---TCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCcEEEEEeC---CCccchhhhcCccHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999988888886 99998731 1123344455678999998864
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=205.76 Aligned_cols=246 Identities=15% Similarity=0.124 Sum_probs=172.3
Q ss_pred CCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCcc-CCCCCCChHHHHHHHcCcEEEEEecCCCCCCc
Q 004368 482 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG 560 (758)
Q Consensus 482 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G 560 (758)
..+..+.+.+++.||..|+++++.|++. ++.|+||++||+.+. ... + .....|+++||.|+.+|+||.|+.+
T Consensus 52 ~~~~~~~~~~~~~~g~~i~~~~~~P~~~----~~~p~vv~~HG~~~~~~~~--~-~~~~~l~~~g~~v~~~d~rg~g~s~ 124 (318)
T 1l7a_A 52 DGVKVYRLTYKSFGNARITGWYAVPDKE----GPHPAIVKYHGYNASYDGE--I-HEMVNWALHGYATFGMLVRGQQRSE 124 (318)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEESSC----SCEEEEEEECCTTCCSGGG--H-HHHHHHHHTTCEEEEECCTTTSSSC
T ss_pred CCeEEEEEEEEccCCCEEEEEEEeeCCC----CCccEEEEEcCCCCCCCCC--c-ccccchhhCCcEEEEecCCCCCCCC
Confidence 4556788899988999999999888752 568999999997654 221 2 2345788899999999999999877
Q ss_pred hhHHhcccccC-----C---------cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEc
Q 004368 561 RQWYENGKFLK-----K---------KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 626 (758)
Q Consensus 561 ~~~~~~~~~~~-----~---------~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 626 (758)
..+...+.... + ...++|+.+++++|.++..+|+++|+++|+|+||.+++.++.++|+ ++++|+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~~ 203 (318)
T 1l7a_A 125 DTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVAD 203 (318)
T ss_dssp CCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEE
T ss_pred CcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEec
Confidence 55321111100 0 2357899999999999988899999999999999999999999887 6677778
Q ss_pred CCccc-hhhcc-CCCCCCCCh-hhh-hccCCC-CCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHH
Q 004368 627 VPFVD-VLTTM-LDPTIPLTT-AEW-EEWGDP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVA 701 (758)
Q Consensus 627 ~~~~d-~~~~~-~~~~~~~~~-~~~-~e~g~p-~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~ 701 (758)
+|+++ +.... .....++.. ..+ ..++.+ .....+..+..+++...+.+++.| +||++|++|..||+.++.++++
T Consensus 204 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~li~~g~~D~~~~~~~~~~~~~ 282 (318)
T 1l7a_A 204 YPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVP-VLMSIGLIDKVTPPSTVFAAYN 282 (318)
T ss_dssp SCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSC-EEEEEETTCSSSCHHHHHHHHH
T ss_pred CCcccCHHHHHhcCCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhhCCCC-EEEEeccCCCCCCcccHHHHHh
Confidence 88644 22211 011111111 111 111212 123344455566777777777877 9999999999999999999998
Q ss_pred HHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 702 KLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 702 ~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
++.. +.++++++ ++||... ... ...+.+||.++|+
T Consensus 283 ~l~~---~~~~~~~~---~~~H~~~---~~~---~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 283 HLET---KKELKVYR---YFGHEYI---PAF---QTEKLAFFKQILK 317 (318)
T ss_dssp HCCS---SEEEEEET---TCCSSCC---HHH---HHHHHHHHHHHHC
T ss_pred hcCC---CeeEEEcc---CCCCCCc---chh---HHHHHHHHHHHhC
Confidence 8764 24566665 8999832 222 3346799999886
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=224.04 Aligned_cols=253 Identities=17% Similarity=0.180 Sum_probs=179.7
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCC--CCCCC--------hHH-HHHHHcCcEEEEE
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN--DPAFN--------SSR-LSLLDRGFIFAIA 551 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~--~~~~~--------~~~-~~l~~~G~~v~~~ 551 (758)
.+..+.+.+++.||.+|.++++.|++. ++.|+||+.|| |+... ...|. ... +.|+++||+|+.+
T Consensus 34 ~~~~~~v~i~~~DG~~L~~~l~~P~~~----~~~PvIl~~hp-yg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~ 108 (652)
T 2b9v_A 34 DYIKREVMVPMRDGVKLYTVIVIPKNA----RNAPILLTRTP-YNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQ 108 (652)
T ss_dssp SEEEEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEES-SCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEE
T ss_pred CcEEEEEEEECCCCcEEEEEEEecCCC----CCccEEEEECC-CCCCcccccccccccccccccchHHHHHhCCCEEEEE
Confidence 456788899999999999999888753 56899999885 33221 11111 113 8899999999999
Q ss_pred ecCCCCCCchhHHhccc-----ccCCcChHhHHHHHHHHHHHc-CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEE
Q 004368 552 QIRGGGELGRQWYENGK-----FLKKKNTFTDFIACAEYLIKN-CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 625 (758)
Q Consensus 552 ~~RG~g~~G~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 625 (758)
|+||+|+++..|..... ...+...++|+.++++||.++ +++| .||+++|+||||++++++++++|+.|+|+|+
T Consensus 109 D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~ 187 (652)
T 2b9v_A 109 DIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAP 187 (652)
T ss_dssp ECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEE
T ss_pred ecCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEe
Confidence 99999999887654321 112237889999999999999 8887 6999999999999999999988999999999
Q ss_pred cCCccchhh--ccCCCCC-CCC-hh---------------------hh------------------------hcc-CCCC
Q 004368 626 AVPFVDVLT--TMLDPTI-PLT-TA---------------------EW------------------------EEW-GDPW 655 (758)
Q Consensus 626 ~~~~~d~~~--~~~~~~~-~~~-~~---------------------~~------------------------~e~-g~p~ 655 (758)
.+|+.|+.. .+..... .+. .. .| .+| +.|.
T Consensus 188 ~~~~~d~~~~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 267 (652)
T 2b9v_A 188 ESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPA 267 (652)
T ss_dssp EEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCS
T ss_pred cccccccccccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCCC
Confidence 999999653 1100000 000 00 00 001 1121
Q ss_pred CHHHHHHHHhcCcccccCC--CCCCeEEEeccCCCCCCCChHHHHHHHHHHhcC--CCCceEEEEecCCCCCCCCC----
Q 004368 656 KEEFYFYMKSYSPVDNVKA--QNYPHILVTAGLNDPRVMYSEPAKFVAKLREMK--TDDNILLFKCELGAGHFSKS---- 727 (758)
Q Consensus 656 ~~~~~~~l~~~sp~~~i~~--~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~--~~~~~~~~~~~~~~gH~~~~---- 727 (758)
.. ++++..||..++++ +++| +|++||.+|.+ +..++.+++++|++++ .+.++++.+ .+|+...
T Consensus 268 ~d---~yw~~~Sp~~~~~~~~I~~P-vLiv~G~~D~~-~~~~~~~~~~aL~~~g~~~~~~lvigp----~~H~~~~~~~~ 338 (652)
T 2b9v_A 268 YD---AFWQGQALDKILAQRKPTVP-MLWEQGLWDQE-DMWGAIHAWQALKDADVKAPNTLVMGP----WRHSGVNYNGS 338 (652)
T ss_dssp SS---HHHHTTCHHHHHHHHCCCSC-EEEEEETTCSS-CSSHHHHHHHHHHHTTCSSCEEEEEES----CCTTGGGSCCS
T ss_pred CC---hHHhcCChhhhhhcCCCCCC-EEEEeecCCcc-ccccHHHHHHHHHhcCCCCCCEEEECC----CCCCCcccccc
Confidence 11 23567899888888 9998 99999999998 7789999999999988 776666654 4786411
Q ss_pred --------ChHHHHHHHHHHHHHHHHhcCCC
Q 004368 728 --------GRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 728 --------~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
...........+++||.++|+..
T Consensus 339 ~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 369 (652)
T 2b9v_A 339 TLGPLEFEGDTAHQYRRDVFRPFFDEYLKPG 369 (652)
T ss_dssp EETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred cCCccccccccchhhhhhHHHHHHHHHhCCC
Confidence 01111112334689999999864
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-20 Score=200.85 Aligned_cols=250 Identities=11% Similarity=0.082 Sum_probs=165.8
Q ss_pred CCceeEEEEeeCCCCeEEEEEEEe-eccc-------------------cccCCCCCEEEEecCCCccCCCCC---CChHH
Q 004368 482 NNYFTERKWASASDGTQIPICIVY-RKNL-------------------VKLDGSDPLLLYGYGSYEICNDPA---FNSSR 538 (758)
Q Consensus 482 ~~~~~~~~~~~s~dG~~i~~~l~~-p~~~-------------------~~~~~~~P~vl~~hGg~~~~~~~~---~~~~~ 538 (758)
..+..+.+.+.+.|| +.+.++. |+.. ...+++.|+||++|||........ |...+
T Consensus 60 ~~v~~~dv~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~~~ 137 (365)
T 3ebl_A 60 EGVSSFDHIIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLC 137 (365)
T ss_dssp TTEEEEEEEEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHHHH
T ss_pred CCCceeeEEecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHHHH
Confidence 355678899999898 5566665 6542 013467899999999854332222 44556
Q ss_pred HHHHHc-CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcC----CCCCC-cEEEEEeChhHHHHHHH
Q 004368 539 LSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC----YCTKE-KLCIEGRSAGGLLIGAV 612 (758)
Q Consensus 539 ~~l~~~-G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-~i~i~G~S~GG~l~~~~ 612 (758)
..|+++ ||+|+.+|+|++++... ...++|+.++++||.++. .+|++ ||+|+|+|+||++++.+
T Consensus 138 ~~la~~~g~~Vv~~dyR~~p~~~~-----------~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~~ 206 (365)
T 3ebl_A 138 RRFVKLSKGVVVSVNYRRAPEHRY-----------PCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHHV 206 (365)
T ss_dssp HHHHHHHTSEEEEECCCCTTTSCT-----------THHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHHH
T ss_pred HHHHHHCCCEEEEeeCCCCCCCCC-----------cHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHHH
Confidence 778886 99999999998876432 245799999999999775 58999 99999999999999999
Q ss_pred HhhCCC---ceeEEEEcCCccchhhccCC----CCCCC-Chhh----hhcc-CCCCCHHHHHHHHhcCcc----cccCCC
Q 004368 613 LNMRPD---LFKAAVAAVPFVDVLTTMLD----PTIPL-TTAE----WEEW-GDPWKEEFYFYMKSYSPV----DNVKAQ 675 (758)
Q Consensus 613 ~~~~p~---~f~a~v~~~~~~d~~~~~~~----~~~~~-~~~~----~~e~-g~p~~~~~~~~l~~~sp~----~~i~~~ 675 (758)
+.+.++ .++++|+.+|++|....... ...+. .... |..+ +....... ...+|+ ..++.+
T Consensus 207 a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~l~~~ 282 (365)
T 3ebl_A 207 AVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDH----PACNPFGPNGRRLGGL 282 (365)
T ss_dssp HHHHHHTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTS----TTTCTTSTTCCCCTTS
T ss_pred HHHHHhcCCceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCC----cccCCCCCcchhhccC
Confidence 887665 79999999999885421100 00010 0000 0111 10000000 112343 233333
Q ss_pred CCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC--CChHHHHHHHHHHHHHHHHhcCCCCCC
Q 004368 676 NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK--SGRFERLREAAFTYTFLMRALSMLPSV 753 (758)
Q Consensus 676 ~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~--~~~~~~~~~~~~~~~fl~~~l~~~~~~ 753 (758)
.+||+||+||++|..+ .++.+++++|++.|.++++++++ +++|++. .......+....+.+||.++++.+.+.
T Consensus 283 ~~pP~Li~~G~~D~l~--~~~~~~~~~L~~~g~~v~l~~~~---g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~~~~~~ 357 (365)
T 3ebl_A 283 PFAKSLIIVSGLDLTC--DRQLAYADALREDGHHVKVVQCE---NATVGFYLLPNTVHYHEVMEEISDFLNANLYYGSHH 357 (365)
T ss_dssp CCCCEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEET---TCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC-----
T ss_pred CCCCEEEEEcCcccch--hHHHHHHHHHHHCCCCEEEEEEC---CCcEEEeccCCCHHHHHHHHHHHHHHHHhhhcccch
Confidence 5678999999999755 47799999999999988888886 9999764 112334444556789999999866543
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=205.07 Aligned_cols=215 Identities=18% Similarity=0.162 Sum_probs=167.0
Q ss_pred eEEEEeeCC-CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCC--------CChH--HHHHHHcCcEEEEEecC
Q 004368 486 TERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA--------FNSS--RLSLLDRGFIFAIAQIR 554 (758)
Q Consensus 486 ~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~--------~~~~--~~~l~~~G~~v~~~~~R 554 (758)
.+.+.+.+. ||..+++.++.|++. .++++.|+||++||+.+...... +... ......+|+.++.+|+|
T Consensus 144 ~~~~~~~~~~dg~~l~~~v~~P~~~-~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~pd~~ 222 (380)
T 3doh_A 144 FLAFTFKDPETGVEIPYRLFVPKDV-NPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCP 222 (380)
T ss_dssp EEEEEEECTTTCCEEEEEEECCSSC-CTTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEECCC
T ss_pred ccceeeccCCCCcEEEEEEEcCCCC-CCCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEecCC
Confidence 467788888 999999999999886 56678899999999765432211 1111 12334578999999999
Q ss_pred CCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh
Q 004368 555 GGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT 634 (758)
Q Consensus 555 G~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~ 634 (758)
|++++|..|...+........+.|+.+++++++++..+|++||+|+|+|+||++++.++.++|++|+++|+.+|..+..
T Consensus 223 g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~~~~- 301 (380)
T 3doh_A 223 PNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVS- 301 (380)
T ss_dssp TTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGG-
T ss_pred CCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCCChh-
Confidence 9999998888755555556788999999999999888999999999999999999999999999999999999975211
Q ss_pred ccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCC-CCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceE
Q 004368 635 TMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 713 (758)
Q Consensus 635 ~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~-~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 713 (758)
.+.++ ..| +|++||++|..||+.++.+++++|++.+.+.+++
T Consensus 302 ------------------------------------~~~~~~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 344 (380)
T 3doh_A 302 ------------------------------------KVERIKDIP-IWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYT 344 (380)
T ss_dssp ------------------------------------GGGGGTTSC-EEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEE
T ss_pred ------------------------------------hhhhccCCC-EEEEecCCCCccCHHHHHHHHHHHHHCCCceEEE
Confidence 01112 245 9999999999999999999999999999888888
Q ss_pred EEEecCCC--------CCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 714 LFKCELGA--------GHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 714 ~~~~~~~~--------gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
+++ ++ +|. .....+. ...+++||.++
T Consensus 345 ~~~---~~~h~~h~~~~H~---~~~~~~~-~~~i~~wL~~~ 378 (380)
T 3doh_A 345 EYE---KGFMEKHGWDPHG---SWIPTYE-NQEAIEWLFEQ 378 (380)
T ss_dssp EEC---TTHHHHTTCCTTC---THHHHHT-CHHHHHHHHTC
T ss_pred Eec---CCcccCCCCCCch---hHHHhcC-CHHHHHHHHhh
Confidence 887 77 553 1222222 11467898765
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=206.64 Aligned_cols=243 Identities=18% Similarity=0.244 Sum_probs=172.6
Q ss_pred CCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCch
Q 004368 482 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR 561 (758)
Q Consensus 482 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~ 561 (758)
..+..+.+.+++.||.+|+++++.|++. ++.|+||++||+.+.... |. ....++++||.|+.+|+||.|+.+.
T Consensus 78 ~~~~~~~~~~~~~~g~~l~~~~~~P~~~----~~~p~vv~~HG~g~~~~~--~~-~~~~~~~~G~~v~~~D~rG~g~s~~ 150 (346)
T 3fcy_A 78 SFAECYDLYFTGVRGARIHAKYIKPKTE----GKHPALIRFHGYSSNSGD--WN-DKLNYVAAGFTVVAMDVRGQGGQSQ 150 (346)
T ss_dssp TTEEEEEEEEECGGGCEEEEEEEEESCS----SCEEEEEEECCTTCCSCC--SG-GGHHHHTTTCEEEEECCTTSSSSCC
T ss_pred CceEEEEEEEEcCCCCEEEEEEEecCCC----CCcCEEEEECCCCCCCCC--hh-hhhHHHhCCcEEEEEcCCCCCCCCC
Confidence 4567889999999999999999988753 578999999997665433 33 3347789999999999999997765
Q ss_pred hHHhc------ccccCC----------cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEE
Q 004368 562 QWYEN------GKFLKK----------KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 625 (758)
Q Consensus 562 ~~~~~------~~~~~~----------~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 625 (758)
..... +....+ ...++|+.++++++.....+|+++|+++|+|+||.+++.++.++|+ ++++|+
T Consensus 151 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~vl 229 (346)
T 3fcy_A 151 DVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVVS 229 (346)
T ss_dssp CCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEEE
T ss_pred CCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEEE
Confidence 42211 000000 1236899999999999988899999999999999999999999998 999999
Q ss_pred cCCccchhhccCCCCCCC-Chh---hhhccCCC---CCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHH
Q 004368 626 AVPFVDVLTTMLDPTIPL-TTA---EWEEWGDP---WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAK 698 (758)
Q Consensus 626 ~~~~~d~~~~~~~~~~~~-~~~---~~~e~g~p---~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~ 698 (758)
.+|+++-........... ... .+..+..| .....+..+..+++...+.++++| +|+++|++|..||+.++.+
T Consensus 230 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P-~lii~G~~D~~~~~~~~~~ 308 (346)
T 3fcy_A 230 EYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGD-VLMCVGLMDQVCPPSTVFA 308 (346)
T ss_dssp ESCSSCCHHHHHHTTCCCGGGHHHHHHHHHHCTTCTTHHHHHHHHGGGCHHHHGGGCCSE-EEEEEETTCSSSCHHHHHH
T ss_pred CCCcccCHHHHhhccccccchHHHHHHHHhcCCCcchHHHHHHHhCcccHHHHHHhcCCC-EEEEeeCCCCcCCHHHHHH
Confidence 999754322211111000 001 11111122 234455556667777777888887 9999999999999998888
Q ss_pred HHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 699 FVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 699 ~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
+++++.. +.++++++ +.||.... .. ...+.+||.+
T Consensus 309 ~~~~~~~---~~~~~~~~---~~gH~~~~---~~---~~~i~~fl~~ 343 (346)
T 3fcy_A 309 AYNNIQS---KKDIKVYP---DYGHEPMR---GF---GDLAMQFMLE 343 (346)
T ss_dssp HHTTCCS---SEEEEEET---TCCSSCCT---TH---HHHHHHHHHT
T ss_pred HHHhcCC---CcEEEEeC---CCCCcCHH---HH---HHHHHHHHHH
Confidence 8877654 45666665 89998761 21 2235688865
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-21 Score=202.06 Aligned_cols=213 Identities=13% Similarity=0.082 Sum_probs=156.5
Q ss_pred eEEEEeeCCCCeEEEEEEEeecccc--ccCCCCCEEEEecCCCcc-CCCCCCChHHHHHHHcCcEEEEEecCCCCCCchh
Q 004368 486 TERKWASASDGTQIPICIVYRKNLV--KLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~--~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~ 562 (758)
.+.+.+.+.+|..+++.++ |+... ..+++.|+||++|||... .....|...+..|+++||.|+.+|+||.++.+
T Consensus 19 ~~~v~~~~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~~~~~-- 95 (283)
T 3bjr_A 19 GMQVIKQKLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYTLLTDQQ-- 95 (283)
T ss_dssp SSEEEEEECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCCHHHHHHHHHHHHTTTCEEEEEECCCTTTCS--
T ss_pred CcceEEeecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCCccccHHHHHHHHhCCcEEEEEeccCCCccc--
Confidence 4677888889988888877 76510 134678999999996532 22233455567888899999999999988753
Q ss_pred HHhcccccCCcChHhHHHHHHHHHHHcC---CCCCCcEEEEEeChhHHHHHHHHhhCCCc-------------eeEEEEc
Q 004368 563 WYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMRPDL-------------FKAAVAA 626 (758)
Q Consensus 563 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~-------------f~a~v~~ 626 (758)
......+.|+.+++++|.+.. .+|+++|+++|+|+||.+++.++.++|+. ++++|+.
T Consensus 96 -------~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ 168 (283)
T 3bjr_A 96 -------PLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVLG 168 (283)
T ss_dssp -------SCBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCSSEEEE
T ss_pred -------cCchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCccEEEEc
Confidence 111245679999999998763 46788999999999999999999999987 8999999
Q ss_pred CCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhc
Q 004368 627 VPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREM 706 (758)
Q Consensus 627 ~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~ 706 (758)
+|+.|+...+... ...+..+ +..+...+|...+.++..| +|++||++|..||+.++.+++++|+..
T Consensus 169 ~p~~~~~~~~~~~-----~~~~~~~--------~~~~~~~~~~~~~~~~~~P-~lii~G~~D~~~p~~~~~~~~~~l~~~ 234 (283)
T 3bjr_A 169 YPVISPLLGFPKD-----DATLATW--------TPTPNELAADQHVNSDNQP-TFIWTTADDPIVPATNTLAYATALATA 234 (283)
T ss_dssp SCCCCTTSBC-------------CC--------CCCGGGGCGGGSCCTTCCC-EEEEEESCCTTSCTHHHHHHHHHHHHT
T ss_pred CCccccccccccc-----cchHHHH--------HHHhHhcCHHHhccCCCCC-EEEEEcCCCCCCChHHHHHHHHHHHHC
Confidence 9988743221100 0000111 0012456777778777777 999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCCCCC
Q 004368 707 KTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 707 ~~~~~~~~~~~~~~~gH~~ 725 (758)
+.+.++++++ ++||.+
T Consensus 235 g~~~~~~~~~---~~~H~~ 250 (283)
T 3bjr_A 235 KIPYELHVFK---HGPHGL 250 (283)
T ss_dssp TCCEEEEEEC---CCSHHH
T ss_pred CCCeEEEEeC---CCCccc
Confidence 8888888886 899964
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-20 Score=199.56 Aligned_cols=236 Identities=11% Similarity=0.030 Sum_probs=161.6
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccc--------------cCCCCCEEEEecCCCccCCCCC---CChHHHHHH-Hc
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVK--------------LDGSDPLLLYGYGSYEICNDPA---FNSSRLSLL-DR 544 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~--------------~~~~~P~vl~~hGg~~~~~~~~---~~~~~~~l~-~~ 544 (758)
....+.+.+.+ +..+++.++.|++. . .+++.|+||++|||........ |...+..|+ ++
T Consensus 69 ~v~~~dv~~~~--~~~l~~~~~~P~~~-~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~ 145 (351)
T 2zsh_A 69 GVFSFDVLIDR--RINLLSRVYRPAYA-DQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLC 145 (351)
T ss_dssp TEEEEEEEEET--TTTEEEEEEEECCT-TCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHH
T ss_pred CceEEEEEecC--CCCeEEEEEecCCc-cccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHHHHHHHHHHc
Confidence 44566777765 44578888888764 2 2467899999999754332222 455667788 68
Q ss_pred CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcC----CCCCC-cEEEEEeChhHHHHHHHHhhCCC-
Q 004368 545 GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC----YCTKE-KLCIEGRSAGGLLIGAVLNMRPD- 618 (758)
Q Consensus 545 G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-~i~i~G~S~GG~l~~~~~~~~p~- 618 (758)
||+|+.+|+||+++... ...++|+.++++||.++. .+|++ +|+++|+|+||.+++.++.++|+
T Consensus 146 g~~vv~~d~rg~~~~~~-----------~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~ 214 (351)
T 2zsh_A 146 KCVVVSVNYRRAPENPY-----------PCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGES 214 (351)
T ss_dssp TSEEEEECCCCTTTSCT-----------THHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTT
T ss_pred CCEEEEecCCCCCCCCC-----------chhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhcc
Confidence 99999999999876532 245799999999999865 47899 99999999999999999999888
Q ss_pred --ceeEEEEcCCccchhhccCCCCCCCChhhhhccCCC-CCHHHHH-HHH------------hcCcc----cccCCCCCC
Q 004368 619 --LFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP-WKEEFYF-YMK------------SYSPV----DNVKAQNYP 678 (758)
Q Consensus 619 --~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p-~~~~~~~-~l~------------~~sp~----~~i~~~~~P 678 (758)
+++++|+.+|+++..... .......+.+ ....... .+. ..+|+ .+++++.+|
T Consensus 215 ~~~v~~~vl~~p~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~p 286 (351)
T 2zsh_A 215 GIDVLGNILLNPMFGGNERT--------ESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFP 286 (351)
T ss_dssp TCCCCEEEEESCCCCCSSCC--------HHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTSCCCTTCCCC
T ss_pred CCCeeEEEEECCccCCCcCC--------hhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCccchhhCCCC
Confidence 899999999987743210 0000001111 0000000 001 12232 345555777
Q ss_pred eEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCC--ChHHHHHHHHHHHHHHHH
Q 004368 679 HILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS--GRFERLREAAFTYTFLMR 745 (758)
Q Consensus 679 ~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~ 745 (758)
|+||+||++|..++ ++.+++++|++.+.++++++++ ++||++.. ......+....+.+||.+
T Consensus 287 P~Lii~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~---g~gH~~~~~~~~~~~~~~~~~i~~Fl~~ 350 (351)
T 2zsh_A 287 KSLVVVAGLDLIRD--WQLAYAEGLKKAGQEVKLMHLE---KATVGFYLLPNNNHFHNVMDEISAFVNA 350 (351)
T ss_dssp EEEEEEETTSTTHH--HHHHHHHHHHHTTCCEEEEEET---TCCTTTTSSSCSHHHHHHHHHHHHHHHC
T ss_pred CEEEEEcCCCcchH--HHHHHHHHHHHcCCCEEEEEEC---CCcEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 79999999999886 7889999999998888777776 99997653 112222233346778764
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=196.75 Aligned_cols=240 Identities=17% Similarity=0.159 Sum_probs=168.6
Q ss_pred CCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCc-cCCCCCCChHHHHHHH-cCcEEEEEecCCCCCC
Q 004368 482 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE-ICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGEL 559 (758)
Q Consensus 482 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~ 559 (758)
..+.++.+++++.||..|+++++.|++ ++.|+||++|||.. ......+...+..|+. .||+|+.+|+|++++.
T Consensus 56 ~~~~~~~~~i~~~~G~~i~~~~~~P~~-----~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~ 130 (317)
T 3qh4_A 56 AGVAVADDVVTGEAGRPVPVRIYRAAP-----TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEH 130 (317)
T ss_dssp HCCEEEEEEEECTTSCEEEEEEEECSC-----SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS
T ss_pred CcceEEEEEecCCCCCeEEEEEEecCC-----CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCCCC
Confidence 355678899999999899999888764 46799999999643 3344446666777875 5999999999988765
Q ss_pred chhHHhcccccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhCCC----ceeEEEEcCCccch
Q 004368 560 GRQWYENGKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVDV 632 (758)
Q Consensus 560 G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~d~ 632 (758)
.. ...++|+.++++|+.++ ..+|++||+|+|+|+||.+++.++.+.++ .++++++.+|++|.
T Consensus 131 ~~-----------p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~ 199 (317)
T 3qh4_A 131 PY-----------PAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDD 199 (317)
T ss_dssp CT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCCCCS
T ss_pred CC-----------chHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECceecC
Confidence 32 34578999999999886 35789999999999999999999887655 48999999999886
Q ss_pred hhccC---CCCCC-CChhh----hhcc-CCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHH
Q 004368 633 LTTML---DPTIP-LTTAE----WEEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKL 703 (758)
Q Consensus 633 ~~~~~---~~~~~-~~~~~----~~e~-g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L 703 (758)
..... ....+ +.... |..| +.... -...+|.....-...||+||+||++|+.++ ++.+++++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~p~~~~~l~~lpP~li~~G~~D~~~~--~~~~~a~~l 271 (317)
T 3qh4_A 200 RPTASRSEFRATPAFDGEAASLMWRHYLAGQTP------SPESVPGRRGQLAGLPATLITCGEIDPFRD--EVLDYAQRL 271 (317)
T ss_dssp SCCHHHHHTTTCSSSCHHHHHHHHHHHHTTCCC------CTTTCGGGCSCCTTCCCEEEEEEEESTTHH--HHHHHHHHH
T ss_pred CCCcCHHHhcCCCCcCHHHHHHHHHHhcCCCCC------CcccCCCcccccCCCCceeEEecCcCCCch--hHHHHHHHH
Confidence 41100 00000 11000 0111 11100 011234332222256679999999999876 899999999
Q ss_pred HhcCCCCceEEEEecCCCCCCCC---CChHHHHHHHHHHHHHHHHhcC
Q 004368 704 REMKTDDNILLFKCELGAGHFSK---SGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~gH~~~---~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
++++.++++++++ +.+|++. .......+....+.+||.++|+
T Consensus 272 ~~~g~~~~l~~~~---g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 272 LGAGVSTELHIFP---RACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp HHTTCCEEEEEEE---EEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCEEEEEeC---CCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 9999999999998 8899742 1122334445557899999875
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=200.70 Aligned_cols=233 Identities=12% Similarity=0.093 Sum_probs=159.0
Q ss_pred EEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHh
Q 004368 498 QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFT 577 (758)
Q Consensus 498 ~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~ 577 (758)
.+.+.++.|++. ++.|+||++||+.+. .+...+..|+++||+|+.+|+||+|+....+ ....++
T Consensus 144 ~l~~~l~~P~~~----~~~P~Vv~~hG~~~~----~~~~~a~~La~~Gy~V~a~D~rG~g~~~~~~--------~~~~~~ 207 (422)
T 3k2i_A 144 RVRATLFLPPGP----GPFPGIIDIFGIGGG----LLEYRASLLAGHGFATLALAYYNFEDLPNNM--------DNISLE 207 (422)
T ss_dssp TEEEEEEECSSS----CCBCEEEEECCTTCS----CCCHHHHHHHTTTCEEEEEECSSSTTSCSSC--------SCEETH
T ss_pred cEEEEEEcCCCC----CCcCEEEEEcCCCcc----hhHHHHHHHHhCCCEEEEEccCCCCCCCCCc--------ccCCHH
Confidence 589998888753 568999999997553 2445577888999999999999988765432 224579
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc---CC---CCCCCChhh----
Q 004368 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM---LD---PTIPLTTAE---- 647 (758)
Q Consensus 578 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~---~~---~~~~~~~~~---- 647 (758)
|+.+++++|.++..+|+++|+++|+|+||++++.++.++|+ ++++|+.+|..+..... .. +..+.....
T Consensus 208 d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (422)
T 3k2i_A 208 YFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVA 286 (422)
T ss_dssp HHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECCCCBCGGGCEEC
T ss_pred HHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCCcccchhhcccC
Confidence 99999999999988899999999999999999999999998 89999988875422110 00 001000000
Q ss_pred ------h-hccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHH-HHHHHHHHhcCCC-CceEEEEec
Q 004368 648 ------W-EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEP-AKFVAKLREMKTD-DNILLFKCE 718 (758)
Q Consensus 648 ------~-~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~-~~~~~~L~~~~~~-~~~~~~~~~ 718 (758)
+ ..+.++... ...++...+.++++| +|++||++|..||..+. ..++++|++.+.+ .++++|+
T Consensus 287 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~P-~Lii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~~-- 357 (422)
T 3k2i_A 287 FSGLVDIVDIRNALVGG------YKNPSMIPIEKAQGP-ILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYP-- 357 (422)
T ss_dssp TTSCEECTTCBCCCTTG------GGSTTBCCGGGCCSC-EEEEEETTCSSSCHHHHHHHHHHHHHHTTCCCCEEEEET--
T ss_pred cchhHHHHHHHhhhhhc------ccccccccHHHCCCC-EEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEC--
Confidence 0 111122111 112333345566787 99999999999998866 5889999999888 7888886
Q ss_pred CCCCCCCCCC--------------------------hHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 004368 719 LGAGHFSKSG--------------------------RFERLREAAFTYTFLMRALSMLPSVGSEQ 757 (758)
Q Consensus 719 ~~~gH~~~~~--------------------------~~~~~~~~~~~~~fl~~~l~~~~~~~~~~ 757 (758)
++||..... .....+....+.+||.++|+......++|
T Consensus 358 -gagH~~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~~~~~~~~~k 421 (422)
T 3k2i_A 358 -GTGHYIEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLGGTQKTAVPK 421 (422)
T ss_dssp -TCCSCCCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred -CCCCEECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcCCccccCCCC
Confidence 999986211 12233345567899999998765544443
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=184.26 Aligned_cols=209 Identities=15% Similarity=0.096 Sum_probs=156.6
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC---CCCChHHHHHHHcCcEEEEEecCCCCCCchhH
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND---PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 563 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~---~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~ 563 (758)
+++.+++.|| +|.++++.|++ ++.|+||++||..+.... ..|......|+++||.|+.+|+||.|.....+
T Consensus 24 ~~~~~~~~~g-~l~~~~~~p~~-----~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~s~~~~ 97 (249)
T 2i3d_A 24 PEVIFNGPAG-RLEGRYQPSKE-----KSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGEF 97 (249)
T ss_dssp CEEEEEETTE-EEEEEEECCSS-----TTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSCC
T ss_pred eEEEEECCCc-eEEEEEEcCCC-----CCCCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
Confidence 3889999898 89998665543 457999999996432221 12244557888999999999999988654332
Q ss_pred HhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCC
Q 004368 564 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPL 643 (758)
Q Consensus 564 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~ 643 (758)
. .....++|+.+++++|..++. ++++++++|+|+||.+++.++.++|+ ++++|+.+|..+...
T Consensus 98 ~------~~~~~~~d~~~~i~~l~~~~~-~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~--------- 160 (249)
T 2i3d_A 98 D------HGAGELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD--------- 160 (249)
T ss_dssp C------SSHHHHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC---------
T ss_pred C------CccchHHHHHHHHHHHHHhCC-CCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh---------
Confidence 1 123456899999999988864 78899999999999999999999998 999999998765321
Q ss_pred ChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHh-cCCCCceEEEEecCCCC
Q 004368 644 TTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLRE-MKTDDNILLFKCELGAG 722 (758)
Q Consensus 644 ~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~g 722 (758)
...+.+++.| +|+++|++|..|++.++.++++++.. .+...++++++ ++|
T Consensus 161 -------------------------~~~~~~~~~P-~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~ 211 (249)
T 2i3d_A 161 -------------------------FSFLAPCPSS-GLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLP---GAN 211 (249)
T ss_dssp -------------------------CTTCTTCCSC-EEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEET---TCC
T ss_pred -------------------------hhhhcccCCC-EEEEEcCCCCCCCHHHHHHHHHHHhhccCCceeEEEEC---CCC
Confidence 1123345677 99999999999999999999999986 34456666665 899
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCC
Q 004368 723 HFSKSGRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 723 H~~~~~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
|..........+ .+.+||.+++...
T Consensus 212 H~~~~~~~~~~~---~i~~fl~~~l~~~ 236 (249)
T 2i3d_A 212 HFFNGKVDELMG---ECEDYLDRRLNGE 236 (249)
T ss_dssp TTCTTCHHHHHH---HHHHHHHHHHTTC
T ss_pred cccccCHHHHHH---HHHHHHHHhcCCC
Confidence 987633333222 3678999998644
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=190.89 Aligned_cols=242 Identities=12% Similarity=0.047 Sum_probs=166.2
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCcc-CCCCCCChHHHHHHHc-CcEEEEEecCCCCCCc
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELG 560 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G 560 (758)
....+.+.+++.|| +|++.++.|++. .++.|+||++|||... .....|......|+++ ||.|+.+|+||+++.+
T Consensus 45 ~~~~~~~~i~~~~g-~l~~~~~~P~~~---~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~~~~~ 120 (310)
T 2hm7_A 45 VAEVREFDMDLPGR-TLKVRMYRPEGV---EPPYPALVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHK 120 (310)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEECTTC---CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC
T ss_pred cceEEEEEeccCCC-eEEEEEEecCCC---CCCCCEEEEECCCccccCChhHhHHHHHHHHHhcCCEEEEeCCCCCCCCC
Confidence 45678888998888 899998888763 3567999999997532 3334466667788876 9999999999998754
Q ss_pred hhHHhcccccCCcChHhHHHHHHHHHHHcC---CCCCCcEEEEEeChhHHHHHHHHhhCCC----ceeEEEEcCCccchh
Q 004368 561 RQWYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVDVL 633 (758)
Q Consensus 561 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~d~~ 633 (758)
. ...++|+.++++|+.++. .+|+++|+++|+|+||.+++.++.++|+ .++++|+.+|++|..
T Consensus 121 ~-----------~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~~~~~ 189 (310)
T 2hm7_A 121 F-----------PAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYD 189 (310)
T ss_dssp T-----------THHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCCCCCC
T ss_pred C-----------CccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcCCC
Confidence 2 234689999999998874 3678999999999999999999988776 699999999988754
Q ss_pred hccCC-------CCCCCChhh----hhcc-CCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHH
Q 004368 634 TTMLD-------PTIPLTTAE----WEEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVA 701 (758)
Q Consensus 634 ~~~~~-------~~~~~~~~~----~~e~-g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~ 701 (758)
..... ....+.... +..| +.+... .....+|.....-...||+||+||++|..+ .++.++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~l~~~~P~lii~G~~D~~~--~~~~~~~~ 263 (310)
T 2hm7_A 190 PAHPPASIEENAEGYLLTGGMMLWFRDQYLNSLEEL----THPWFSPVLYPDLSGLPPAYIATAQYDPLR--DVGKLYAE 263 (310)
T ss_dssp TTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGG----GCTTTCGGGCSCCTTCCCEEEEEEEECTTH--HHHHHHHH
T ss_pred cccCCcchhhcCCCCCCCHHHHHHHHHHhCCCCCcc----CCccCCCCcCccccCCCCEEEEEecCCCch--HHHHHHHH
Confidence 11000 000000000 0111 110000 001234543222123456999999999987 68999999
Q ss_pred HHHhcCCCCceEEEEecCCCCCCCCC---ChHHHHHHHHHHHHHHHHhcC
Q 004368 702 KLREMKTDDNILLFKCELGAGHFSKS---GRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 702 ~L~~~~~~~~~~~~~~~~~~gH~~~~---~~~~~~~~~~~~~~fl~~~l~ 748 (758)
+|++.+.++++++++ +.||++.. .....-+....+.+||.++|+
T Consensus 264 ~l~~~g~~~~~~~~~---g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 310 (310)
T 2hm7_A 264 ALNKAGVKVEIENFE---DLIHGFAQFYSLSPGATKALVRIAEKLRDALA 310 (310)
T ss_dssp HHHHTTCCEEEEEEE---EEETTGGGGTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCEEEEEeC---CCccchhhhcccChHHHHHHHHHHHHHHHHhC
Confidence 999999888888887 88996532 112222334456899988764
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-20 Score=181.44 Aligned_cols=214 Identities=15% Similarity=0.125 Sum_probs=152.6
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchh
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~ 562 (758)
.+..+.+.+++ ||.++.++++.|++ +.|+||++||..+....+.+......|+++||.|+.+|+||.|.....
T Consensus 9 ~~~~~~~~~~~-~g~~l~~~~~~p~~------~~p~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~ 81 (223)
T 2o2g_A 9 QPQEYAVSVSV-GEVKLKGNLVIPNG------ATGIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLTQEEEEID 81 (223)
T ss_dssp CCCEEEEEEEE-TTEEEEEEEECCTT------CCEEEEEECCTTCCTTCHHHHHHHHHHHHHTCEEEEECSSCHHHHHHH
T ss_pred CceeeEEEEec-CCeEEEEEEecCCC------CceEEEEecCCCCCCCccchHHHHHHHHHCCCEEEEEcCCCcCCCCcc
Confidence 45567888886 99999999877653 479999999976554433344556788889999999999987654332
Q ss_pred HHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCC
Q 004368 563 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 642 (758)
Q Consensus 563 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~ 642 (758)
.........-....+|+.++++++..++.+|+++++++|+|+||.+++.++.++|++++++|+.+|..++..
T Consensus 82 ~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~-------- 153 (223)
T 2o2g_A 82 LRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLAP-------- 153 (223)
T ss_dssp HHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGCT--------
T ss_pred chhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcCH--------
Confidence 211000011123357889999999999889999999999999999999999999999999999998755311
Q ss_pred CChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCC
Q 004368 643 LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 722 (758)
Q Consensus 643 ~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g 722 (758)
..+.+++.| +|+++|++|..+|. + ..+.+++.+.+.+++.++ ++|
T Consensus 154 ---------------------------~~~~~~~~P-~l~i~g~~D~~~~~-~---~~~~~~~~~~~~~~~~~~---~~~ 198 (223)
T 2o2g_A 154 ---------------------------SALPHVKAP-TLLIVGGYDLPVIA-M---NEDALEQLQTSKRLVIIP---RAS 198 (223)
T ss_dssp ---------------------------TTGGGCCSC-EEEEEETTCHHHHH-H---HHHHHHHCCSSEEEEEET---TCC
T ss_pred ---------------------------HHHhcCCCC-EEEEEccccCCCCH-H---HHHHHHhhCCCeEEEEeC---CCC
Confidence 112334566 99999999998862 2 334455555666666665 899
Q ss_pred CCCCCC-hHHHHHHHHHHHHHHHHhcC
Q 004368 723 HFSKSG-RFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 723 H~~~~~-~~~~~~~~~~~~~fl~~~l~ 748 (758)
|..... ....+. ..+.+||.++|+
T Consensus 199 H~~~~~~~~~~~~--~~i~~fl~~~l~ 223 (223)
T 2o2g_A 199 HLFEEPGALTAVA--QLASEWFMHYLR 223 (223)
T ss_dssp TTCCSTTHHHHHH--HHHHHHHHHHCC
T ss_pred cccCChHHHHHHH--HHHHHHHHHhcC
Confidence 986542 223222 336789998874
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.7e-19 Score=187.26 Aligned_cols=241 Identities=16% Similarity=0.084 Sum_probs=166.1
Q ss_pred CCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCc-cCCCCCCChHHHHHHHc-CcEEEEEecCCCCCC
Q 004368 482 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE-ICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGEL 559 (758)
Q Consensus 482 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~ 559 (758)
....++.+.+++.+| .|++.++.|++. ++.|+||++|||.. ......|...+..|+++ ||.|+.+|+||+++.
T Consensus 61 ~~~~~~~~~i~~~~~-~i~~~iy~P~~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~La~~~g~~Vv~~Dyrg~~~~ 135 (323)
T 3ain_A 61 EVGKIEDITIPGSET-NIKARVYYPKTQ----GPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPEN 135 (323)
T ss_dssp CCSEEEEEEEECSSS-EEEEEEEECSSC----SCCCEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS
T ss_pred CccEEEEEEecCCCC-eEEEEEEecCCC----CCCcEEEEECCCccccCChHHHHHHHHHHHHhcCCEEEEecCCCCCCC
Confidence 455778899998888 799998888642 56899999999752 33344566667778764 999999999999875
Q ss_pred chhHHhcccccCCcChHhHHHHHHHHHHHcCCC--CCCcEEEEEeChhHHHHHHHHhhCCCce---eEEEEcCCccchhh
Q 004368 560 GRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC--TKEKLCIEGRSAGGLLIGAVLNMRPDLF---KAAVAAVPFVDVLT 634 (758)
Q Consensus 560 G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~--d~~~i~i~G~S~GG~l~~~~~~~~p~~f---~a~v~~~~~~d~~~ 634 (758)
.. ...++|+.++++|+.++... |+++|+|+|+|+||.+++.++.++|+.. +++|+.+|++|...
T Consensus 136 ~~-----------p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~~~ 204 (323)
T 3ain_A 136 KF-----------PAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSFDL 204 (323)
T ss_dssp CT-----------THHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSCCS
T ss_pred CC-----------cchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccCCC
Confidence 32 23568999999999876311 7899999999999999999998888766 89999999887432
Q ss_pred ccC-----CCCCCCChhh----hhcc-CCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHH
Q 004368 635 TML-----DPTIPLTTAE----WEEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLR 704 (758)
Q Consensus 635 ~~~-----~~~~~~~~~~----~~e~-g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~ 704 (758)
... .....+.... +..| +.+.+.. -...+|+.. .-...||+||++|++|+.+ .++.+++++|+
T Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~sp~~~-~l~~l~P~lii~G~~D~l~--~~~~~~a~~l~ 277 (323)
T 3ain_A 205 ITKSLYDNGEGFFLTREHIDWFGQQYLRSFADLL----DFRFSPILA-DLNDLPPALIITAEHDPLR--DQGEAYANKLL 277 (323)
T ss_dssp CCHHHHHHSSSSSSCHHHHHHHHHHHCSSGGGGG----CTTTCGGGS-CCTTCCCEEEEEETTCTTH--HHHHHHHHHHH
T ss_pred CCccHHHhccCCCCCHHHHHHHHHHhCCCCcccC----CcccCcccC-cccCCCHHHEEECCCCccH--HHHHHHHHHHH
Confidence 100 0000011100 0111 1110000 012355543 2124556999999999987 48899999999
Q ss_pred hcCCCCceEEEEecCCCCCCCCCC---hHHHHHHHHHHHHHHHHhcC
Q 004368 705 EMKTDDNILLFKCELGAGHFSKSG---RFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 705 ~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~ 748 (758)
+++.++++++++ +.+|++... ....-+....+.+||.++|+
T Consensus 278 ~ag~~~~~~~~~---g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 321 (323)
T 3ain_A 278 QSGVQVTSVGFN---NVIHGFVSFFPFIEQGRDAIGLIGYVLRKVFY 321 (323)
T ss_dssp HTTCCEEEEEET---TCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEEEC---CCccccccccCcCHHHHHHHHHHHHHHHHHhc
Confidence 999888888886 899986421 12222334456889998875
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-20 Score=195.09 Aligned_cols=231 Identities=17% Similarity=0.122 Sum_probs=155.0
Q ss_pred EEEEEEeeccccccCCCCCEEEEecCCCccCCC-CCCChHHHHHHH-cCcEEEEEecCCCCCCchhHHhcccccCCcChH
Q 004368 499 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF 576 (758)
Q Consensus 499 i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~ 576 (758)
|+++++.|++. ++.|+||++|||...... ..+...+..|+. .||+|+.+|+|++++... ...+
T Consensus 67 i~~~~~~p~~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~~-----------~~~~ 131 (322)
T 3fak_A 67 CAAEWVRAPGC----QAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHPF-----------PAAV 131 (322)
T ss_dssp EEEEEEECTTC----CTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTSCT-----------THHH
T ss_pred eEEEEEeCCCC----CCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCC-----------CcHH
Confidence 88888888653 568999999997533222 223344556666 599999999999876532 3456
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCc----eeEEEEcCCccchhhccC-----CCCCC-CChh
Q 004368 577 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL----FKAAVAAVPFVDVLTTML-----DPTIP-LTTA 646 (758)
Q Consensus 577 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~~~~d~~~~~~-----~~~~~-~~~~ 646 (758)
+|+.++++||.++ .+|++||+|+|+|+||++++.++.+.|+. ++++|+.+|++|+..... ....+ +...
T Consensus 132 ~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
T 3fak_A 132 EDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKTRAEADPMVAPG 210 (322)
T ss_dssp HHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTHHHHTTTTCCSCCSS
T ss_pred HHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcCHHHhCccCcccCHH
Confidence 9999999999998 57999999999999999999998876654 999999999998643210 00001 0000
Q ss_pred hh----hcc-CCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCC
Q 004368 647 EW----EEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 721 (758)
Q Consensus 647 ~~----~e~-g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 721 (758)
.+ ..| +... .. ....+|+....+ ..||+||+||+.|..+ .++.+++++|+++|+++++++|+ +.
T Consensus 211 ~~~~~~~~~~~~~~-~~----~~~~sp~~~~~~-~~pP~li~~g~~D~~~--~~~~~~~~~l~~~g~~~~~~~~~---g~ 279 (322)
T 3fak_A 211 GINKMAARYLNGAD-AK----HPYASPNFANLK-GLPPLLIHVGRDEVLL--DDSIKLDAKAKADGVKSTLEIWD---DM 279 (322)
T ss_dssp HHHHHHHHHHTTSC-TT----CTTTCGGGSCCT-TCCCEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEET---TC
T ss_pred HHHHHHHHhcCCCC-CC----CcccCCCccccc-CCChHhEEEcCcCccH--HHHHHHHHHHHHcCCCEEEEEeC---Cc
Confidence 00 111 1110 00 012456533222 4567999999999874 58999999999999998888886 99
Q ss_pred CCCCCC---ChHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 004368 722 GHFSKS---GRFERLREAAFTYTFLMRALSMLPSVGSE 756 (758)
Q Consensus 722 gH~~~~---~~~~~~~~~~~~~~fl~~~l~~~~~~~~~ 756 (758)
+|++.. ......+....+.+||.++|+.....-+|
T Consensus 280 ~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~~~~~~~ 317 (322)
T 3fak_A 280 IHVWHAFHPMLPEGKQAIVRVGEFMREQWAALAAALEH 317 (322)
T ss_dssp CTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eeehhhccCCCHHHHHHHHHHHHHHHHHHhcchhhhhh
Confidence 997631 12233344556789999999766554444
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=192.54 Aligned_cols=244 Identities=15% Similarity=0.138 Sum_probs=158.8
Q ss_pred eeEEEEeeC-CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCC-CChHHHHHHHcCcEEEEEecCCCCC----
Q 004368 485 FTERKWASA-SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQIRGGGE---- 558 (758)
Q Consensus 485 ~~~~~~~~s-~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~~RG~g~---- 558 (758)
..+++.+.| .+|.++++.++.|++. ..+++.|+||++||+.+....+. +......+.++|++|+.+|.++.|.
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~-~~~~~~P~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~~~~ 92 (280)
T 3ls2_A 14 WHKQYTHSAVSTHCTMRFAVFLPPGA-SESNKVPVLYWLSGLTCTDENFMQKAGAFKKAAELGIAIVAPDTSPRGDNVPN 92 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTC-BTTBCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCC
T ss_pred eEEEEEEechhcCCceEEEEEcCCCC-CCCCCcCEEEEeCCCCCChhhhhcchhHHHHHhhCCeEEEEeCCccccccccc
Confidence 345566655 5789999999999987 55678999999999755432210 1112345666799999999875542
Q ss_pred -------CchhHHhccccc--CCcCh-HhHHH-HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcC
Q 004368 559 -------LGRQWYENGKFL--KKKNT-FTDFI-ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV 627 (758)
Q Consensus 559 -------~G~~~~~~~~~~--~~~~~-~~D~~-~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 627 (758)
.|..|+...... .+... .+++. +++.++.+... .+++++|+|+|+||++++.++.++|++|+++++.+
T Consensus 93 ~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s 171 (280)
T 3ls2_A 93 EDSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFP-VTSTKAISGHSMGGHGALMIALKNPQDYVSASAFS 171 (280)
T ss_dssp CSCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHHSS-EEEEEEEEEBTHHHHHHHHHHHHSTTTCSCEEEES
T ss_pred ccccccccCCccccccccccccccccHHHHHHHHHHHHHHhhCC-CCCCeEEEEECHHHHHHHHHHHhCchhheEEEEec
Confidence 222333221110 01112 22222 23444444332 35899999999999999999999999999999999
Q ss_pred CccchhhccCCCCCCCChhhh-hccCCCCCHHHHHHHHhcCcccccCCCC---CCeEEEeccCCCCCCCChH-HHHHHHH
Q 004368 628 PFVDVLTTMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKAQN---YPHILVTAGLNDPRVMYSE-PAKFVAK 702 (758)
Q Consensus 628 ~~~d~~~~~~~~~~~~~~~~~-~e~g~p~~~~~~~~l~~~sp~~~i~~~~---~P~~Li~~G~~D~~V~~~~-~~~~~~~ 702 (758)
|++++... ++....+ ..+|.. .+ .+..++|...+++.+ .+|+||+||++|..|+... +++++++
T Consensus 172 ~~~~~~~~------~~~~~~~~~~~g~~--~~---~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~ 240 (280)
T 3ls2_A 172 PIVNPINC------PWGVKAFTGYLGAD--KT---TWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQNLVAV 240 (280)
T ss_dssp CCSCGGGS------HHHHHHHHHHHCSC--GG---GTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCCCCCCHHHHHHH
T ss_pred CccCcccC------cchhhHHHhhcCch--HH---HHHhcCHHHHHHhccccCCCcEEEEEeCCCcccCCchhHHHHHHH
Confidence 98875431 1111111 112321 11 123556666555553 3349999999999999854 8999999
Q ss_pred HHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 703 LREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 703 L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
|++.+.++++++++ +.+|... .......+.++|+.++|.
T Consensus 241 l~~~g~~~~~~~~~---g~~H~~~----~~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 241 AKQKDYPLTLEMQT---GYDHSYF----FISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HHHHTCCEEEEEET---TCCSSHH----HHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCceEEEeC---CCCCchh----hHHHHHHHHHHHHHHHhc
Confidence 99999988887776 8899631 222334456899998875
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-20 Score=188.82 Aligned_cols=239 Identities=18% Similarity=0.270 Sum_probs=157.6
Q ss_pred EEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccc
Q 004368 489 KWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGK 568 (758)
Q Consensus 489 ~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~ 568 (758)
+.++ .||.+|.+++..|++. .++.|+||++||..+......|......|+++||.|+.+|+||+|........
T Consensus 4 ~~~~-~~g~~l~~~~~~p~~~---~~~~p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~--- 76 (251)
T 2wtm_A 4 MYID-CDGIKLNAYLDMPKNN---PEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFED--- 76 (251)
T ss_dssp EEEE-ETTEEEEEEEECCTTC---CSSEEEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCGGG---
T ss_pred eEEe-cCCcEEEEEEEccCCC---CCCCCEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEecCCCCCCCCCcccc---
Confidence 3444 4889999988877642 24578999999965542233455566788889999999999999976542211
Q ss_pred ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccC-----CCCC-C
Q 004368 569 FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML-----DPTI-P 642 (758)
Q Consensus 569 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~-----~~~~-~ 642 (758)
..-....+|+.+++++|.+...+ +++.++|+|+||.+++.++.++|++++++|+.+|...+..... .... +
T Consensus 77 -~~~~~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 153 (251)
T 2wtm_A 77 -HTLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDP 153 (251)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHHHHTEETTEECBT
T ss_pred -CCHHHHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHHhhhhhccccCCc
Confidence 01112357888888998765433 5999999999999999999999999999999998754322100 0000 0
Q ss_pred CChhhhh-cc-CCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCC
Q 004368 643 LTTAEWE-EW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 720 (758)
Q Consensus 643 ~~~~~~~-e~-g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 720 (758)
.....+. .+ +.......+..+...++...+.++++| +|++||++|..||+..+.++++.+. +.++++++ +
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~---~ 225 (251)
T 2wtm_A 154 ENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKP-VLIVHGDQDEAVPYEASVAFSKQYK----NCKLVTIP---G 225 (251)
T ss_dssp TBCCSEEEETTTEEEETHHHHHHTTCCHHHHHHHCCSC-EEEEEETTCSSSCHHHHHHHHHHSS----SEEEEEET---T
T ss_pred hhcchHHhhhhccccchHHHHHHHccCHHHHHHhcCCC-EEEEEeCCCCCcChHHHHHHHHhCC----CcEEEEEC---C
Confidence 0000000 11 100112223333444555556667888 9999999999999999988877653 34566665 8
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 721 AGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 721 ~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
+||.. ....+.+.+ .+.+||.+++.
T Consensus 226 ~gH~~-~~~~~~~~~--~i~~fl~~~~~ 250 (251)
T 2wtm_A 226 DTHCY-DHHLELVTE--AVKEFMLEQIA 250 (251)
T ss_dssp CCTTC-TTTHHHHHH--HHHHHHHHHHC
T ss_pred CCccc-chhHHHHHH--HHHHHHHHhcc
Confidence 99987 554444433 36789988764
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-19 Score=189.81 Aligned_cols=247 Identities=19% Similarity=0.191 Sum_probs=168.0
Q ss_pred CCceeEEEEeeCCCCe-EEEEEEEeeccccccCCCCCEEEEecCCCcc-CCCCCCChHHHHHHH-cCcEEEEEecCCCCC
Q 004368 482 NNYFTERKWASASDGT-QIPICIVYRKNLVKLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLLD-RGFIFAIAQIRGGGE 558 (758)
Q Consensus 482 ~~~~~~~~~~~s~dG~-~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~ 558 (758)
..+..+.+.+++.||. +|++.++.|++. .++.|+||++|||... .....|......|++ .||.|+.+|+||+|+
T Consensus 47 ~~~~~~~~~i~~~~g~~~l~~~~~~P~~~---~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~~ 123 (323)
T 1lzl_A 47 DGVSLRELSAPGLDGDPEVKIRFVTPDNT---AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPE 123 (323)
T ss_dssp TTEEEEEEEECCSTTCCCEEEEEEEESSC---CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTT
T ss_pred CCceEEEEEecCCCCCceeEEEEEecCCC---CCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCCC
Confidence 4567888999999997 799999888753 3567999999997532 222335556677877 499999999999987
Q ss_pred CchhHHhcccccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhCCC----ceeEEEEcCCccc
Q 004368 559 LGRQWYENGKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVD 631 (758)
Q Consensus 559 ~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~d 631 (758)
... ...++|+.++++|+.++ -.+|+++|+++|+|+||++++.++.++|+ .++++|+.+|++|
T Consensus 124 ~~~-----------~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~ 192 (323)
T 1lzl_A 124 TTF-----------PGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELD 192 (323)
T ss_dssp SCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCC
T ss_pred CCC-----------CchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCccC
Confidence 532 23468999999999874 23688999999999999999999888765 4999999999987
Q ss_pred hhhcc-----CCCCCCCChhh----hhcc-CCCCC----HHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHH
Q 004368 632 VLTTM-----LDPTIPLTTAE----WEEW-GDPWK----EEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPA 697 (758)
Q Consensus 632 ~~~~~-----~~~~~~~~~~~----~~e~-g~p~~----~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~ 697 (758)
..... ......+.... +..| +.+.. ... ....+|.........||+||+||++|..+ .++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~sp~~~~~~~~~~P~li~~G~~D~~~--~~~~ 267 (323)
T 1lzl_A 193 DRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDV---SIYAAPSRATDLTGLPPTYLSTMELDPLR--DEGI 267 (323)
T ss_dssp TTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCC---CTTTCGGGCSCCTTCCCEEEEEETTCTTH--HHHH
T ss_pred CCcCchhHHHhccCCCCCHHHHHHHHHHhCCCCcccccccCC---CcccCcccCcccCCCChhheEECCcCCch--HHHH
Confidence 54210 00000111100 0111 11100 000 01234543322223456999999999987 5889
Q ss_pred HHHHHHHhcCCCCceEEEEecCCCCCCCCC--ChHHHHHHHHHHHHHHHHhcCCC
Q 004368 698 KFVAKLREMKTDDNILLFKCELGAGHFSKS--GRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 698 ~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
+++++|++++.++++++++ +.+|++.. ......+....+.+||.++++..
T Consensus 268 ~~~~~l~~~g~~~~~~~~~---g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 319 (323)
T 1lzl_A 268 EYALRLLQAGVSVELHSFP---GTFHGSALVATAAVSERGAAEALTAIRRGLRSL 319 (323)
T ss_dssp HHHHHHHHTTCCEEEEEET---TCCTTGGGSTTSHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHcCCCEEEEEeC---cCccCcccCccCHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999888888886 89997531 11222233445789999998643
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-20 Score=187.93 Aligned_cols=213 Identities=15% Similarity=0.108 Sum_probs=153.5
Q ss_pred EEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhc-
Q 004368 488 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN- 566 (758)
Q Consensus 488 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~- 566 (758)
.+.+++.||.++.++++.|++ ++.|+||++||..+... .|......|+++||.|+.+|+||+|+.+..+...
T Consensus 5 ~~~~~~~~g~~l~~~~~~p~~-----~~~p~vv~~hG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~ 77 (236)
T 1zi8_A 5 GISIQSYDGHTFGALVGSPAK-----APAPVIVIAQDIFGVNA--FMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQD 77 (236)
T ss_dssp TCCEECTTSCEECEEEECCSS-----CSEEEEEEECCTTBSCH--HHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCTTC
T ss_pred eEEEecCCCCeEEEEEECCCC-----CCCCEEEEEcCCCCCCH--HHHHHHHHHHhCCcEEEeccccccCCCcccccccc
Confidence 456778899999999877753 46799999999665432 3555667888899999999999998765321100
Q ss_pred ----------ccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc
Q 004368 567 ----------GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM 636 (758)
Q Consensus 567 ----------~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~ 636 (758)
..........+|+.+++++|.++..++ ++|+++|+|+||.+++.++.++| ++++++.+|....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~---- 150 (236)
T 1zi8_A 78 ERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVGLE---- 150 (236)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSSGG----
T ss_pred hhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcccc----
Confidence 001111234689999999998876555 79999999999999999999988 8888887764211
Q ss_pred CCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEE
Q 004368 637 LDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 716 (758)
Q Consensus 637 ~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 716 (758)
++...+.+++.| +|+++|.+|..|++.++.++++++++.+ +.+++.++
T Consensus 151 ------------------------------~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 198 (236)
T 1zi8_A 151 ------------------------------KQLNKVPEVKHP-ALFHMGGQDHFVPAPSRQLITEGFGANP-LLQVHWYE 198 (236)
T ss_dssp ------------------------------GCGGGGGGCCSC-EEEEEETTCTTSCHHHHHHHHHHHTTCT-TEEEEEET
T ss_pred ------------------------------cchhhhhhcCCC-EEEEecCCCCCCCHHHHHHHHHHHHhCC-CceEEEEC
Confidence 112234445677 9999999999999999999999998765 66666665
Q ss_pred ecCCCCCCCCCChH------HHHHHHHHHHHHHHHhcCC
Q 004368 717 CELGAGHFSKSGRF------ERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 717 ~~~~~gH~~~~~~~------~~~~~~~~~~~fl~~~l~~ 749 (758)
++||....... ..-+....+.+||.++|+.
T Consensus 199 ---~~~H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 234 (236)
T 1zi8_A 199 ---EAGHSFARTGSSGYVASAAALANERTLDFLVPLQSR 234 (236)
T ss_dssp ---TCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC-
T ss_pred ---CCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcCC
Confidence 89997653311 1122234468999998864
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-20 Score=192.85 Aligned_cols=241 Identities=16% Similarity=0.163 Sum_probs=155.2
Q ss_pred EEEEee-CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCC-CChHHHHHHHcCcEEEEEec--CCCCCCchh
Q 004368 487 ERKWAS-ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQI--RGGGELGRQ 562 (758)
Q Consensus 487 ~~~~~~-s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~~--RG~g~~G~~ 562 (758)
+.+.+. ..+|..+++.++.|++. . .++.|+||++||+.+....+. +......++++||+|+.+|+ ||.++.|..
T Consensus 17 ~~~~~~s~~~~~~~~~~v~~P~~~-~-~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~~~~~ 94 (282)
T 3fcx_A 17 KVFEHDSVELNCKMKFAVYLPPKA-E-TGKCPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDTSPRGCNIKGED 94 (282)
T ss_dssp EEEEEEETTTTEEEEEEEEECGGG-G-TSCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC----
T ss_pred EEEEEEchhcCCeeEEEEEcCCCC-C-CCCCCEEEEEcCCCCCccchhhcchHHHHhhcCCeEEEEeccccCcccccccc
Confidence 444444 45788999999999875 3 367899999999765433211 11124567789999999999 888765533
Q ss_pred --H--------HhcccccC---CcChHhHHH-HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 563 --W--------YENGKFLK---KKNTFTDFI-ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 563 --~--------~~~~~~~~---~~~~~~D~~-~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
| +....... ......++. ++++++.++..+|++||+++|+|+||++++.++.++|++|+++|+.+|
T Consensus 95 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~ 174 (282)
T 3fcx_A 95 ESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAP 174 (282)
T ss_dssp ----CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCEEEESC
T ss_pred ccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEEEEeCC
Confidence 1 11100000 001123333 344555545458899999999999999999999999999999999999
Q ss_pred ccchhhccCCCCCCCChhhh-hccCCCCCHHHHHHHHhcCcccccCCC---CCCeEEEeccCCCCCCCChH--HHHHHHH
Q 004368 629 FVDVLTTMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKAQ---NYPHILVTAGLNDPRVMYSE--PAKFVAK 702 (758)
Q Consensus 629 ~~d~~~~~~~~~~~~~~~~~-~e~g~p~~~~~~~~l~~~sp~~~i~~~---~~P~~Li~~G~~D~~V~~~~--~~~~~~~ 702 (758)
++++... ++....+ ..+|... . .+..++|...+.+. ..| +||+||++|..||..+ +++++++
T Consensus 175 ~~~~~~~------~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~p-~li~~G~~D~~v~~~~~~~~~~~~~ 242 (282)
T 3fcx_A 175 ICNPVLC------PWGKKAFSGYLGTDQ--S---KWKAYDATHLVKSYPGSQLD-ILIDQGKDDQFLLDGQLLPDNFIAA 242 (282)
T ss_dssp CCCGGGS------HHHHHHHHHHHC-----C---CGGGGCHHHHHTTCC---CC-EEEEEETTCHHHHTTSSCHHHHHHH
T ss_pred ccCcccC------chhHHHHHHhcCCch--h---hhhhcCHHHHHHhcccCCCc-EEEEcCCCCcccccchhhHHHHHHH
Confidence 8875431 1111111 1123221 1 12345665444443 555 9999999999997655 6699999
Q ss_pred HHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 703 LREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 703 L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
|++.+.++++++++ ++||.+. ..-....+.+.|+.++|.
T Consensus 243 l~~~g~~~~~~~~~---g~~H~~~----~~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 243 CTEKKIPVVFRLQE---DYDHSYY----FIATFITDHIRHHAKYLN 281 (282)
T ss_dssp HHHTTCCEEEEEET---TCCSSHH----HHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCceEEEECC---CCCcCHH----HHHhhhHHHHHHHHHhhc
Confidence 99999888877776 8899632 222223446788888875
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-19 Score=196.87 Aligned_cols=226 Identities=14% Similarity=0.144 Sum_probs=156.8
Q ss_pred EEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHh
Q 004368 498 QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFT 577 (758)
Q Consensus 498 ~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~ 577 (758)
.|+++++.|++. ++.|+||++||+.+.. +...+..|+++||+|+.+|+||.++.+... ....++
T Consensus 160 ~l~~~l~~P~~~----~~~P~Vv~lhG~~~~~----~~~~a~~La~~Gy~Vla~D~rG~~~~~~~~--------~~~~~~ 223 (446)
T 3hlk_A 160 RVRGTLFLPPEP----GPFPGIVDMFGTGGGL----LEYRASLLAGKGFAVMALAYYNYEDLPKTM--------ETLHLE 223 (446)
T ss_dssp TEEEEEEECSSS----CCBCEEEEECCSSCSC----CCHHHHHHHTTTCEEEEECCSSSTTSCSCC--------SEEEHH
T ss_pred eEEEEEEeCCCC----CCCCEEEEECCCCcch----hhHHHHHHHhCCCEEEEeccCCCCCCCcch--------hhCCHH
Confidence 589998888753 5689999999975532 344577889999999999999988765421 124579
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc---CC---CCCCCChh-----
Q 004368 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM---LD---PTIPLTTA----- 646 (758)
Q Consensus 578 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~---~~---~~~~~~~~----- 646 (758)
|+.+++++|.++..+|+++|+++|+|+||.+++.++.++|+ ++++|+.+|........ .. +.++....
T Consensus 224 d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (446)
T 3hlk_A 224 YFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVT 302 (446)
T ss_dssp HHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECCCCBCGGGCEEC
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCccccchhccccc
Confidence 99999999999998999999999999999999999999998 89999888865321100 00 00110000
Q ss_pred -----hh-hccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHH-HHHHHHHHhcCCC-CceEEEEec
Q 004368 647 -----EW-EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEP-AKFVAKLREMKTD-DNILLFKCE 718 (758)
Q Consensus 647 -----~~-~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~-~~~~~~L~~~~~~-~~~~~~~~~ 718 (758)
.+ ..+..+.... .......+.+++.| +||+||++|..+|+.+. ..++++|++++.+ +++++|+
T Consensus 303 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~P-vLii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~p-- 373 (446)
T 3hlk_A 303 KDGYADIVDVLNSPLEGP------DQKSFIPVERAEST-FLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYP-- 373 (446)
T ss_dssp SSSCEECTTCBCCTTSGG------GGGGBCCGGGCCSE-EEEEEETTCCSSCHHHHHHHHHHHHHHTTCCCCEEEEET--
T ss_pred cchHHHHHHHHhchhhcc------ccccccCHHHCCCC-EEEEEeCCCCCcChHHHHHHHHHHHHHcCCCCcEEEEEC--
Confidence 00 1112221111 11122234455666 99999999999998555 6899999999988 7888886
Q ss_pred CCCCCCCCC--------------------------ChHHHHHHHHHHHHHHHHhcCCC
Q 004368 719 LGAGHFSKS--------------------------GRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 719 ~~~gH~~~~--------------------------~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
++||.... ......+....+.+||.++|+..
T Consensus 374 -gagH~~~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~~~ 430 (446)
T 3hlk_A 374 -ETGHYIEPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLGGH 430 (446)
T ss_dssp -TBCSCCCSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -CCCCeECCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99998720 11113334556789999999754
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-20 Score=190.43 Aligned_cols=242 Identities=13% Similarity=0.134 Sum_probs=160.8
Q ss_pred eeEEEEee-CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCCh---HHHHHHHcCcEEEEEecCCCCCCc
Q 004368 485 FTERKWAS-ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---SRLSLLDRGFIFAIAQIRGGGELG 560 (758)
Q Consensus 485 ~~~~~~~~-s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~~~RG~g~~G 560 (758)
..+.+.+. ..+|..+++.++.|++. . +++.|+||++||+.+.... |.. ....+.++||+|+.+|+||.|...
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~-~-~~~~p~vv~lHG~~~~~~~--~~~~~~~~~~~~~~g~~vv~~d~~g~G~s~ 89 (278)
T 3e4d_A 14 MQGVFSHQSETLKSEMTFAVYVPPKA-I-HEPCPVVWYLSGLTCTHAN--VMEKGEYRRMASELGLVVVCPDTSPRGNDV 89 (278)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGG-G-TSCEEEEEEECCTTCCSHH--HHHHSCCHHHHHHHTCEEEECCSSCCSTTS
T ss_pred cEEEEEEeccccCCcceEEEEcCCCC-C-CCCCCEEEEEcCCCCCccc--hhhcccHHHHHhhCCeEEEecCCcccCccc
Confidence 34555554 45789999999999875 3 5678999999997654332 222 223444569999999999887542
Q ss_pred hh----H--------Hhccccc--CCcChHhHHH--HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEE
Q 004368 561 RQ----W--------YENGKFL--KKKNTFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAV 624 (758)
Q Consensus 561 ~~----~--------~~~~~~~--~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v 624 (758)
.. | +...... .....+.+.+ ++++++.+...+|+++++++|+|+||++++.++.++|++|++++
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 169 (278)
T 3e4d_A 90 PDELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSCS 169 (278)
T ss_dssp CCCTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCEE
T ss_pred ccccccccccCCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceEE
Confidence 21 1 1111000 0111223332 36667776656788999999999999999999999999999999
Q ss_pred EcCCccchhhccCCCCCCCChhhhh-ccCCCCCHHHHHHHHhcCcccccCCC-CCCeEEEeccCCCCCCCChH-HHHHHH
Q 004368 625 AAVPFVDVLTTMLDPTIPLTTAEWE-EWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMYSE-PAKFVA 701 (758)
Q Consensus 625 ~~~~~~d~~~~~~~~~~~~~~~~~~-e~g~p~~~~~~~~l~~~sp~~~i~~~-~~P~~Li~~G~~D~~V~~~~-~~~~~~ 701 (758)
+.+|++++... ++....+. .+|.. .+ .+..++|...+++. ..||+||+||++|+.|+... +.++++
T Consensus 170 ~~~~~~~~~~~------~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~ 238 (278)
T 3e4d_A 170 AFAPIVAPSSA------DWSEPALEKYLGAD--RA---AWRRYDACSLVEDGARFPEFLIDQGKADSFLEKGLRPWLFEE 238 (278)
T ss_dssp EESCCSCGGGC------TTTHHHHHHHHCSC--GG---GGGGGCHHHHHHTTCCCSEEEEEEETTCTTHHHHTCTHHHHH
T ss_pred EeCCcccccCC------ccchhhHHHhcCCc--HH---HHHhcChhhHhhcCCCCCcEEEEecCCCcccccchhHHHHHH
Confidence 99999885432 22222221 22332 11 12355666555554 33469999999999998422 789999
Q ss_pred HHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 702 KLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 702 ~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
+|++.+.++++++++ +++|... ..-....+.+.|+.++|+
T Consensus 239 ~l~~~g~~~~~~~~~---g~~H~~~----~~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 239 AIKGTDIGLTLRMHD---RYDHSYY----FISTFMDDHLKWHAERLG 278 (278)
T ss_dssp HHTTSSCEEEEEEET---TCCSSHH----HHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCceEEEeC---CCCcCHH----HHHHHHHHHHHHHHHhcC
Confidence 999999887777775 8899631 112234456789988875
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-20 Score=190.05 Aligned_cols=242 Identities=15% Similarity=0.153 Sum_probs=159.8
Q ss_pred eeEEEEeeC-CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCCh---HHHHHHHcCcEEEEEecCCCCCC-
Q 004368 485 FTERKWASA-SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---SRLSLLDRGFIFAIAQIRGGGEL- 559 (758)
Q Consensus 485 ~~~~~~~~s-~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~~~RG~g~~- 559 (758)
..+.+.+.+ .+|.++++.++.|++. ..+++.|+||++||+.+.... |.. ....+.++|++|+.+|.|+.|..
T Consensus 16 ~~~~~~~~s~~~g~~~~~~v~~P~~~-~~~~~~p~vv~lHG~~~~~~~--~~~~~~~~~~~~~~g~~vv~pd~~~~g~~~ 92 (280)
T 3i6y_A 16 WHKQYSHVSNTLNCAMRFAIYLPPQA-STGAKVPVLYWLSGLTCSDEN--FMQKAGAQRLAAELGIAIVAPDTSPRGEGV 92 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGG-GTTCCEEEEEEECCTTCCSSH--HHHHSCCHHHHHHHTCEEEEECSSCCSTTC
T ss_pred cEEEEEEeccccCCeeEEEEEeCCCC-CCCCCccEEEEecCCCCChhH--HhhcccHHHHHhhCCeEEEEeCCccccccc
Confidence 345555554 5789999999999986 556789999999997654332 222 23455667999999999865531
Q ss_pred ----------chhHHhcccccC--CcCh-HhHHH-HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEE
Q 004368 560 ----------GRQWYENGKFLK--KKNT-FTDFI-ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 625 (758)
Q Consensus 560 ----------G~~~~~~~~~~~--~~~~-~~D~~-~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 625 (758)
|..|+....... .... .+.+. ++++++.+...+ +++++|+|+|+||++++.++.++|++|+++|+
T Consensus 93 ~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~ 171 (280)
T 3i6y_A 93 ADDEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVSA 171 (280)
T ss_dssp CCCSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEEE
T ss_pred CcccccccccCccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEEE
Confidence 122221111000 0111 22222 344555454434 78999999999999999999999999999999
Q ss_pred cCCccchhhccCCCCCCCChhhhh-ccCCCCCHHHHHHHHhcCcccccCCCC-CCeEEEeccCCCCCCCChH-HHHHHHH
Q 004368 626 AVPFVDVLTTMLDPTIPLTTAEWE-EWGDPWKEEFYFYMKSYSPVDNVKAQN-YPHILVTAGLNDPRVMYSE-PAKFVAK 702 (758)
Q Consensus 626 ~~~~~d~~~~~~~~~~~~~~~~~~-e~g~p~~~~~~~~l~~~sp~~~i~~~~-~P~~Li~~G~~D~~V~~~~-~~~~~~~ 702 (758)
.+|++++... ++....+. .+|.. ... +..++|...+++.+ .+|+||+||++|+.|+..+ +++++++
T Consensus 172 ~s~~~~~~~~------~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~ 240 (280)
T 3i6y_A 172 FSPINNPVNC------PWGQKAFTAYLGKD--TDT---WREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVLEAA 240 (280)
T ss_dssp ESCCCCGGGS------HHHHHHHHHHHCSC--GGG---TGGGCHHHHHHHCSSCCCEEEEEETTCTTHHHHTCHHHHHHH
T ss_pred eCCccccccC------chHHHHHHHhcCCc--hHH---HHhcCHHHHHHhcCCCccEEEEEeCCCccccchhhHHHHHHH
Confidence 9998875431 11111111 12321 111 23556666655554 2349999999999998755 8999999
Q ss_pred HHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 703 LREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 703 L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
|++.+.++++++++ +++|.. ........+.++|+.++|+
T Consensus 241 l~~~g~~~~~~~~~---g~~H~~----~~~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 241 ASSNNYPLELRSHE---GYDHSY----YFIASFIEDHLRFHSNYLN 279 (280)
T ss_dssp HHHTTCCEEEEEET---TCCSSH----HHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCceEEEeC---CCCccH----HHHHHhHHHHHHHHHhhcc
Confidence 99999988887776 889963 2222334556899998875
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=210.13 Aligned_cols=238 Identities=14% Similarity=0.094 Sum_probs=163.7
Q ss_pred eCCCCeE--EEEEEEeeccccccCCCCCEEEEecC--CCccC---------C----------------------------
Q 004368 492 SASDGTQ--IPICIVYRKNLVKLDGSDPLLLYGYG--SYEIC---------N---------------------------- 530 (758)
Q Consensus 492 ~s~dG~~--i~~~l~~p~~~~~~~~~~P~vl~~hG--g~~~~---------~---------------------------- 530 (758)
+..||++ |.+.|+.|++. ++.|+||..|| +.+.. .
T Consensus 179 ~~~DG~~d~L~a~l~~P~~~----~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 254 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKST----EKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKE 254 (763)
T ss_dssp TTCSSSCCEEEEEEEECCCS----SCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCC
T ss_pred cCCCCCeeeEEEEEEecCCC----CcccEEEecCCcCCCCcccccccccccccccccccCcccccccccccccccccccc
Confidence 5689999 99999999864 57899996543 21110 0
Q ss_pred -------CCCC-----ChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHc---------
Q 004368 531 -------DPAF-----NSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN--------- 589 (758)
Q Consensus 531 -------~~~~-----~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--------- 589 (758)
...| ......|+++||+|+.+|+||+|+++..+. .......+|+.++++||..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~~~-----~~~~~e~~D~~a~IdwL~~~~~~~~d~~~ 329 (763)
T 1lns_A 255 LPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQT-----SGDYQQIYSMTAVIDWLNGRARAYTSRKK 329 (763)
T ss_dssp CCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCC-----TTSHHHHHHHHHHHHHHTTSSCEESSTTC
T ss_pred ccccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCcCC-----CCCHHHHHHHHHHHHHHhhcccccccccc
Confidence 0112 123478999999999999999998765421 22235679999999999843
Q ss_pred ------CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCC-------CCCC-Chh-----hhhc
Q 004368 590 ------CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP-------TIPL-TTA-----EWEE 650 (758)
Q Consensus 590 ------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~-------~~~~-~~~-----~~~e 650 (758)
.+ +.+||+++|+||||+++++++.++|+.++|+|+.+|+.|+....... ..+. ... .+..
T Consensus 330 ~~~v~q~~-~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~~~ 408 (763)
T 1lns_A 330 THEIKASW-ANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSR 408 (763)
T ss_dssp CCEECCTT-EEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGG
T ss_pred cccccccC-CCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhhhHHhHHHHhh
Confidence 33 45799999999999999999999999999999999998765432111 0110 000 0000
Q ss_pred --------------------c------CCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHH
Q 004368 651 --------------------W------GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLR 704 (758)
Q Consensus 651 --------------------~------g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~ 704 (758)
+ ..+... .++...+|..+++++++| +|++||.+|..|++.++.+++++|+
T Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~w~~~s~~~~l~~I~~P-vLii~G~~D~~vp~~~a~~l~~al~ 484 (763)
T 1lns_A 409 NLDGADFLKGNAEYEKRLAEMTAALDRKSGDYN---QFWHDRNYLINTDKVKAD-VLIVHGLQDWNVTPEQAYNFWKALP 484 (763)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCC---HHHHTTBGGGGGGGCCSE-EEEEEETTCCSSCTHHHHHHHHHSC
T ss_pred hcCcchhhhHHHHHHHHHHHHHhhhhhccCchh---HHhhccChhhHhhcCCCC-EEEEEECCCCCCChHHHHHHHHhhc
Confidence 0 111111 223456788888899998 9999999999999999999999998
Q ss_pred hcCCCCceEEEEecCCCCCCCCCC-hHHHHHHHHHHHHHHHHhcCCC
Q 004368 705 EMKTDDNILLFKCELGAGHFSKSG-RFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 705 ~~~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
. +.+..++ +. ++||..... ....+ ...+.+||.++|+..
T Consensus 485 ~-~~~~~l~-i~---~~gH~~~~~~~~~~~--~~~i~~Ffd~~Lkg~ 524 (763)
T 1lns_A 485 E-GHAKHAF-LH---RGAHIYMNSWQSIDF--SETINAYFVAKLLDR 524 (763)
T ss_dssp T-TCCEEEE-EE---SCSSCCCTTBSSCCH--HHHHHHHHHHHHTTC
T ss_pred c-CCCeEEE-Ee---CCcccCccccchHHH--HHHHHHHHHHHhcCC
Confidence 7 6555443 33 789975322 11111 234689999999765
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=198.76 Aligned_cols=244 Identities=15% Similarity=0.161 Sum_probs=167.4
Q ss_pred eeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChH-HHHHHHcCcEEEEEecCCCCCCchhH
Q 004368 485 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSS-RLSLLDRGFIFAIAQIRGGGELGRQW 563 (758)
Q Consensus 485 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~-~~~l~~~G~~v~~~~~RG~g~~G~~~ 563 (758)
..+++.++. +|..|+++++ |++ +++.|+||++||..+... .+... ...++++||.|+.+|+||.|+.....
T Consensus 134 ~~~~~~i~~-~~~~l~~~~~-~~~----~~~~p~vv~~HG~~~~~~--~~~~~~~~~~~~~g~~vi~~D~~G~G~s~~~~ 205 (405)
T 3fnb_A 134 PLKSIEVPF-EGELLPGYAI-ISE----DKAQDTLIVVGGGDTSRE--DLFYMLGYSGWEHDYNVLMVDLPGQGKNPNQG 205 (405)
T ss_dssp CCEEEEEEE-TTEEEEEEEE-CCS----SSCCCEEEEECCSSCCHH--HHHHHTHHHHHHTTCEEEEECCTTSTTGGGGT
T ss_pred CcEEEEEeE-CCeEEEEEEE-cCC----CCCCCEEEEECCCCCCHH--HHHHHHHHHHHhCCcEEEEEcCCCCcCCCCCC
Confidence 357777776 6789999865 432 245699999999643322 12222 23667899999999999998764221
Q ss_pred HhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccC---CC-
Q 004368 564 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML---DP- 639 (758)
Q Consensus 564 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~---~~- 639 (758)
........+|+.+++++|..++ ++|+++|+|+||++++.++.++| +++++|+.+|+.|+..... ..
T Consensus 206 -----~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~~~~~~~ 275 (405)
T 3fnb_A 206 -----LHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFRISFSTA 275 (405)
T ss_dssp -----CCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHHHHCC--
T ss_pred -----CCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHHHhhhhh
Confidence 1222345788999999987765 79999999999999999999998 8999999999998654321 00
Q ss_pred -CCCCCh-h---------------hh----hccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHH
Q 004368 640 -TIPLTT-A---------------EW----EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAK 698 (758)
Q Consensus 640 -~~~~~~-~---------------~~----~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~ 698 (758)
..|... . .+ ..++.......++.+..+++...+.++++| +||+||++|..|++.++.+
T Consensus 276 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vLii~G~~D~~v~~~~~~~ 354 (405)
T 3fnb_A 276 LKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVP-SLFLVGAGEDSELMRQSQV 354 (405)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSC-EEEEEETTSCHHHHHHHHH
T ss_pred hhCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCC-EEEEecCCCcCCChHHHHH
Confidence 001000 0 00 012222222233344455665557777888 9999999999999999999
Q ss_pred HHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 699 FVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 699 ~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
++++|+..+.+.++++++...++||.........+.+ .+.+||.++|+.
T Consensus 355 l~~~l~~~~~~~~l~~~~~~~h~gh~~~~~~~~~~~~--~i~~fL~~~l~~ 403 (405)
T 3fnb_A 355 LYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMHY--QVFEWLNHIFKK 403 (405)
T ss_dssp HHHHHHHTTCCEEEEEECTTTTCCSGGGGGGHHHHHH--HHHHHHHHHHC-
T ss_pred HHHHhccCCCCceEEEEcCCccchhccccchHHHHHH--HHHHHHHHHhCc
Confidence 9999999888888888875556666554444443333 368999999874
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-19 Score=188.85 Aligned_cols=241 Identities=16% Similarity=0.119 Sum_probs=154.6
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCcc-CCCCCCChHHHHHHHc-CcEEEEEecCCCCCCc
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELG 560 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G 560 (758)
....+.+.+ +|..+ ++|++. ....|+||++|||... .....|......|+.+ ||+|+.+|+|++++..
T Consensus 57 ~~~~~~~~~---~g~~~----~~p~~~---~~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~~ 126 (322)
T 3k6k_A 57 GVELTLTDL---GGVPC----IRQATD---GAGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENP 126 (322)
T ss_dssp TCEEEEEEE---TTEEE----EEEECT---TCCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTSC
T ss_pred CceEEEEEE---CCEeE----EecCCC---CCCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCCC
Confidence 444455544 67544 466653 2233459999997532 2222344455677765 9999999999987653
Q ss_pred hhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCc----eeEEEEcCCccchhhcc
Q 004368 561 RQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL----FKAAVAAVPFVDVLTTM 636 (758)
Q Consensus 561 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~~~~d~~~~~ 636 (758)
. ...++|+.++++||.++ .+|+++|+|+|+|+||.+++.++.+.|+. ++++|+.+|++|+....
T Consensus 127 ~-----------~~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~ 194 (322)
T 3k6k_A 127 F-----------PAAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLSR 194 (322)
T ss_dssp T-----------THHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCS
T ss_pred C-----------chHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcccCc
Confidence 2 34578999999999988 46899999999999999999999887765 89999999998854211
Q ss_pred C------CCCCCCChhhh----hcc-CCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHh
Q 004368 637 L------DPTIPLTTAEW----EEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLRE 705 (758)
Q Consensus 637 ~------~~~~~~~~~~~----~e~-g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~ 705 (758)
. .....+..... ..| +.. +.. ....+|+....+ ..||+||+||++|..+ .++.+++++|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~sp~~~~~~-~~pP~li~~G~~D~~~--~~~~~~~~~l~~ 266 (322)
T 3k6k_A 195 WSNSNLADRDFLAEPDTLGEMSELYVGGE-DRK----NPLISPVYADLS-GLPEMLIHVGSEEALL--SDSTTLAERAGA 266 (322)
T ss_dssp HHHHHTGGGCSSSCHHHHHHHHHHHHTTS-CTT----CTTTCGGGSCCT-TCCCEEEEEESSCTTH--HHHHHHHHHHHH
T ss_pred cchhhccCCCCcCCHHHHHHHHHHhcCCC-CCC----CCcCCccccccc-CCCcEEEEECCcCccH--HHHHHHHHHHHH
Confidence 0 00000100000 011 110 000 012356544333 4566999999999874 689999999999
Q ss_pred cCCCCceEEEEecCCCCCCCCCC---hHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 004368 706 MKTDDNILLFKCELGAGHFSKSG---RFERLREAAFTYTFLMRALSMLPSVGSE 756 (758)
Q Consensus 706 ~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~~~~~~~~ 756 (758)
+|.++++++|+ +.+|++... .....+...++.+||.++|+......+|
T Consensus 267 ~g~~~~l~~~~---g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~~~~~~~ 317 (322)
T 3k6k_A 267 AGVSVELKIWP---DMPHVFQMYGKFVNAADISIKEICHWISARISKLAAALEH 317 (322)
T ss_dssp TTCCEEEEEET---TCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC--------
T ss_pred CCCCEEEEEEC---CCccccccccccChHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 99988888886 999976321 1223334555789999999876555444
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-20 Score=192.86 Aligned_cols=234 Identities=12% Similarity=0.070 Sum_probs=161.9
Q ss_pred eeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHH
Q 004368 485 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 564 (758)
Q Consensus 485 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~ 564 (758)
..+.+.+++ +|.+|.++++.|+ +.|+||++||+.+.. ..|......|+++||.|+.+|+||.|+......
T Consensus 5 ~~~~~~~~~-~g~~l~~~~~~p~-------~~p~vv~~HG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~G~g~s~~~~~ 74 (290)
T 3ksr_A 5 KLSSIEIPV-GQDELSGTLLTPT-------GMPGVLFVHGWGGSQ--HHSLVRAREAVGLGCICMTFDLRGHEGYASMRQ 74 (290)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEE-------SEEEEEEECCTTCCT--TTTHHHHHHHHTTTCEEECCCCTTSGGGGGGTT
T ss_pred ceeeEEecC-CCeEEEEEEecCC-------CCcEEEEeCCCCCCc--CcHHHHHHHHHHCCCEEEEeecCCCCCCCCCcc
Confidence 346677776 7889999988776 369999999976543 346666778888999999999999987655322
Q ss_pred hcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCC
Q 004368 565 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLT 644 (758)
Q Consensus 565 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~ 644 (758)
. .......+|+.+++++|.+++.+|+++|+++|+|+||++++.++.++| .+++++.+|..+...... .+..
T Consensus 75 ~----~~~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~~~~---~~~~ 145 (290)
T 3ksr_A 75 S----VTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDAHWD---QPKV 145 (290)
T ss_dssp T----CBHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSSCTT---SBHH
T ss_pred c----ccHHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhhhhh---cccc
Confidence 1 111234689999999999998889999999999999999999999988 677788788655322110 0100
Q ss_pred hh----hhhcc-CCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecC
Q 004368 645 TA----EWEEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCEL 719 (758)
Q Consensus 645 ~~----~~~e~-g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 719 (758)
.. .+..+ ..+.... ..++...+.++++| +|++||.+|..|++.++.++++++...+ +.++++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~P-~lii~G~~D~~v~~~~~~~~~~~~~~~~-~~~~~~~~--- 214 (290)
T 3ksr_A 146 SLNADPDLMDYRRRALAPG------DNLALAACAQYKGD-VLLVEAENDVIVPHPVMRNYADAFTNAR-SLTSRVIA--- 214 (290)
T ss_dssp HHHHSTTHHHHTTSCCCGG------GCHHHHHHHHCCSE-EEEEEETTCSSSCHHHHHHHHHHTTTSS-EEEEEEET---
T ss_pred cccCChhhhhhhhhhhhhc------cccHHHHHHhcCCC-eEEEEecCCcccChHHHHHHHHHhccCC-CceEEEcC---
Confidence 00 00111 1111111 11222334445677 9999999999999999999999987765 45566665
Q ss_pred CCCCCCCCC-hHHHHHHHHHHHHHHHHhcCCC
Q 004368 720 GAGHFSKSG-RFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 720 ~~gH~~~~~-~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
++||..... ....+ ...+.+||.++++..
T Consensus 215 ~~gH~~~~~~~~~~~--~~~i~~fl~~~~~~~ 244 (290)
T 3ksr_A 215 GADHALSVKEHQQEY--TRALIDWLTEMVVGR 244 (290)
T ss_dssp TCCTTCCSHHHHHHH--HHHHHHHHHHHHHTC
T ss_pred CCCCCCCcchHHHHH--HHHHHHHHHHHhcCC
Confidence 899976432 22222 233688999988654
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=174.93 Aligned_cols=188 Identities=16% Similarity=0.198 Sum_probs=140.9
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCcc---CCCCCCChHHHHHHHcCcEEEEEecCCCCCCchh
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI---CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~---~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~ 562 (758)
.+.+.+++.|| +|+++++.|++. ++.|+||++||+... .....|......|+++||.|+.+|+||.|.....
T Consensus 6 ~~~~~~~~~~g-~l~~~~~~p~~~----~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~ 80 (208)
T 3trd_A 6 NEDFLIQGPVG-QLEVMITRPKGI----EKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGR 80 (208)
T ss_dssp SSCEEEECSSS-EEEEEEECCSSC----CCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC
T ss_pred cceEEEECCCc-eEEEEEEcCCCC----CCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCCCCCCCC
Confidence 46788899999 999987776542 468999999996322 2222234455688889999999999999876543
Q ss_pred HHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCC
Q 004368 563 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 642 (758)
Q Consensus 563 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~ 642 (758)
+ .......+|+.+++++|.++ .+.++++++|+|+||.+++.++ ++| .++++|+.+|..+...
T Consensus 81 ~------~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~~~-------- 142 (208)
T 3trd_A 81 Y------DNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFYEG-------- 142 (208)
T ss_dssp C------CTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTSGG--------
T ss_pred c------cchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEeccccccCC--------
Confidence 2 22234578999999999887 3458999999999999999999 667 8999999888752110
Q ss_pred CChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCC
Q 004368 643 LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 722 (758)
Q Consensus 643 ~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g 722 (758)
++ .+...+.| +|+++|++|..||+.++.++++++... .++++++ ++|
T Consensus 143 -----------------------~~---~~~~~~~p-~l~i~g~~D~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~ 189 (208)
T 3trd_A 143 -----------------------FA---SLTQMASP-WLIVQGDQDEVVPFEQVKAFVNQISSP---VEFVVMS---GAS 189 (208)
T ss_dssp -----------------------GT---TCCSCCSC-EEEEEETTCSSSCHHHHHHHHHHSSSC---CEEEEET---TCC
T ss_pred -----------------------ch---hhhhcCCC-EEEEECCCCCCCCHHHHHHHHHHccCc---eEEEEeC---CCC
Confidence 11 22333567 999999999999999998888876543 5666665 899
Q ss_pred CCCCCCh
Q 004368 723 HFSKSGR 729 (758)
Q Consensus 723 H~~~~~~ 729 (758)
|......
T Consensus 190 H~~~~~~ 196 (208)
T 3trd_A 190 HFFHGRL 196 (208)
T ss_dssp SSCTTCH
T ss_pred CcccccH
Confidence 9876544
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.8e-20 Score=196.43 Aligned_cols=246 Identities=16% Similarity=0.154 Sum_probs=165.6
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCCh-HHHHHHHcCcEEEEEecCCCCCCch
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS-SRLSLLDRGFIFAIAQIRGGGELGR 561 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~G~~v~~~~~RG~g~~G~ 561 (758)
.+..+.+.+++.||.+++++++.|++. +.++.|+||++||+.+.. ..+.. ....|+++||.|+.+|+||.|+...
T Consensus 65 ~~~~~~~~~~~~~g~~~~~~~~~p~~~--~~~~~p~vv~~hG~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~ 140 (367)
T 2hdw_A 65 KVEHRKVTFANRYGITLAADLYLPKNR--GGDRLPAIVIGGPFGAVK--EQSSGLYAQTMAERGFVTLAFDPSYTGESGG 140 (367)
T ss_dssp TEEEEEEEEECTTSCEEEEEEEEESSC--CSSCEEEEEEECCTTCCT--TSHHHHHHHHHHHTTCEEEEECCTTSTTSCC
T ss_pred CceeEEEEEecCCCCEEEEEEEeCCCC--CCCCCCEEEEECCCCCcc--hhhHHHHHHHHHHCCCEEEEECCCCcCCCCC
Confidence 446788999999999999999888762 246789999999965432 22332 5678889999999999999986653
Q ss_pred hHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCC---
Q 004368 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD--- 638 (758)
Q Consensus 562 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~--- 638 (758)
.... ........+|+.+++++|.++..+|+++++++|+|+||.+++.++.++| .++++|+.+|+ ++......
T Consensus 141 ~~~~---~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~p~-~~~~~~~~~~~ 215 (367)
T 2hdw_A 141 QPRN---VASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTSTMY-DMTRVMSKGYN 215 (367)
T ss_dssp SSSS---CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCC-CHHHHHHHTTT
T ss_pred cCcc---ccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEeccc-cccHHHhhhhc
Confidence 2211 0112346789999999999998888999999999999999999999988 58999998886 32110000
Q ss_pred -------------------------------CCCC---CCh----hh-hhccC-------------CCCCHHHHHHHHhc
Q 004368 639 -------------------------------PTIP---LTT----AE-WEEWG-------------DPWKEEFYFYMKSY 666 (758)
Q Consensus 639 -------------------------------~~~~---~~~----~~-~~e~g-------------~p~~~~~~~~l~~~ 666 (758)
...| ... .. +..+. ..........+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (367)
T 2hdw_A 216 DSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMNM 295 (367)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHHTTS
T ss_pred cccchHHHHHHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHhcCC
Confidence 0001 000 00 00000 00111123445567
Q ss_pred CcccccCCCC-CCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 667 SPVDNVKAQN-YPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 667 sp~~~i~~~~-~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
+|...+.+++ .| +|++||++|. ++.++.+++++ .+.+.++++++ ++||.......... ....+.+||.+
T Consensus 296 ~~~~~~~~i~~~P-vLii~G~~D~--~~~~~~~~~~~---~~~~~~~~~~~---g~gH~~~~~~~~~~-~~~~i~~fl~~ 365 (367)
T 2hdw_A 296 PILTYIKEISPRP-ILLIHGERAH--SRYFSETAYAA---AAEPKELLIVP---GASHVDLYDRLDRI-PFDRIAGFFDE 365 (367)
T ss_dssp CSCTTGGGGTTSC-EEEEEETTCT--THHHHHHHHHH---SCSSEEEEEET---TCCTTHHHHCTTTS-CHHHHHHHHHH
T ss_pred ChhHhHHhhcCCc-eEEEecCCCC--CHHHHHHHHHh---CCCCeeEEEeC---CCCeeeeecCchhH-HHHHHHHHHHh
Confidence 8888888887 87 9999999998 77788777766 45566777776 89997321101100 12335789988
Q ss_pred hc
Q 004368 746 AL 747 (758)
Q Consensus 746 ~l 747 (758)
+|
T Consensus 366 ~l 367 (367)
T 2hdw_A 366 HL 367 (367)
T ss_dssp HC
T ss_pred hC
Confidence 75
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=190.56 Aligned_cols=208 Identities=18% Similarity=0.217 Sum_probs=152.0
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccC-CCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHh
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC-NDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 565 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~ 565 (758)
..+.+. +..+++.+++|++. .++.|+||++|||.... ....+......|+++||+|+.+|+||+++....
T Consensus 59 ~~i~y~---~~~~~~~~~~p~~~---~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~~~--- 129 (303)
T 4e15_A 59 DHLRYG---EGRQLVDVFYSEKT---TNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVTLE--- 129 (303)
T ss_dssp EEEECS---STTCEEEEEECTTC---CTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSCHH---
T ss_pred eeeccC---CCCcEEEEEecCCC---CCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCChh---
Confidence 445555 33356666777643 46789999999976433 333466667889999999999999999875422
Q ss_pred cccccCCcChHhHHHHHHHHHHHc-CCCCCCcEEEEEeChhHHHHHHHHhhCC-------CceeEEEEcCCccchhhccC
Q 004368 566 NGKFLKKKNTFTDFIACAEYLIKN-CYCTKEKLCIEGRSAGGLLIGAVLNMRP-------DLFKAAVAAVPFVDVLTTML 637 (758)
Q Consensus 566 ~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p-------~~f~a~v~~~~~~d~~~~~~ 637 (758)
..+.|+.++++||.+. ...++++|+++|+|+||++++.++.+.+ +.++++|+.+|+.|+.....
T Consensus 130 --------~~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~~~ 201 (303)
T 4e15_A 130 --------QLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSN 201 (303)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHHHT
T ss_pred --------HHHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHhhhc
Confidence 3468999999999763 2245899999999999999999888654 37999999999998755432
Q ss_pred CCCCCCChhhhhccCCCCCHHHHHHHHhcCcc-cccCCC----CCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCce
Q 004368 638 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV-DNVKAQ----NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 712 (758)
Q Consensus 638 ~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~-~~i~~~----~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~ 712 (758)
.. +.... ..++.. ++ .+...||+ ..+.++ ..| +||+||++|..|++.++.+++++|++.|.++++
T Consensus 202 ~~--~~~~~--~~~~~~--~~---~~~~~sp~~~~~~~~~~~~~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~ 271 (303)
T 4e15_A 202 LE--SVNPK--NILGLN--ER---NIESVSPMLWEYTDVTVWNSTK-IYVVAAEHDSTTFIEQSRHYADVLRKKGYKASF 271 (303)
T ss_dssp CT--TTSGG--GTTCCC--TT---TTTTTCGGGCCCCCGGGGTTSE-EEEEEEEESCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred cc--ccchh--hhhcCC--HH---HHHHcCchhhcccccccCCCCC-EEEEEeCCCCCCchHHHHHHHHHHHHCCCceEE
Confidence 10 00000 112221 11 12467887 566654 555 999999999999999999999999999999888
Q ss_pred EEEEecCCCCCC
Q 004368 713 LLFKCELGAGHF 724 (758)
Q Consensus 713 ~~~~~~~~~gH~ 724 (758)
++++ ++||+
T Consensus 272 ~~~~---g~~H~ 280 (303)
T 4e15_A 272 TLFK---GYDHF 280 (303)
T ss_dssp EEEE---EEETT
T ss_pred EEeC---CCCch
Confidence 8888 89995
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-19 Score=185.72 Aligned_cols=240 Identities=18% Similarity=0.132 Sum_probs=163.0
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCcc-CCCCCCChHHHHHHHc-CcEEEEEecCCCCCCc
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELG 560 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G 560 (758)
....+.+.+++.+| .|++.+++|++. ++.|+||++|||... .....|......|+++ ||.|+.+|+||+|+..
T Consensus 45 ~~~~~~~~i~~~~g-~i~~~~~~p~~~----~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~g~~~ 119 (311)
T 2c7b_A 45 IAETRDVHIPVSGG-SIRARVYFPKKA----AGLPAVLYYHGGGFVFGSIETHDHICRRLSRLSDSVVVSVDYRLAPEYK 119 (311)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEESSSC----SSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTCEEEEECCCCTTTSC
T ss_pred cceEEEEEecCCCC-cEEEEEEecCCC----CCCcEEEEECCCcccCCChhhhHHHHHHHHHhcCCEEEEecCCCCCCCC
Confidence 44678888998888 899998888653 346999999997522 2233455566677775 9999999999998753
Q ss_pred hhHHhcccccCCcChHhHHHHHHHHHHHcC---CCCCCcEEEEEeChhHHHHHHHHhhCCC----ceeEEEEcCCccchh
Q 004368 561 RQWYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVDVL 633 (758)
Q Consensus 561 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~d~~ 633 (758)
. ....+|+.++++||.+.. .+|+++|+++|+|+||++++.++.++|+ +++++|+.+|++|+.
T Consensus 120 ~-----------~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~ 188 (311)
T 2c7b_A 120 F-----------PTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPVVNMT 188 (311)
T ss_dssp T-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCCS
T ss_pred C-----------CccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCccCCc
Confidence 2 234689999999998762 3678999999999999999999987765 599999999998842
Q ss_pred hcc--------CCCCCCCChhh----hhcc-CCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHH
Q 004368 634 TTM--------LDPTIPLTTAE----WEEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFV 700 (758)
Q Consensus 634 ~~~--------~~~~~~~~~~~----~~e~-g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~ 700 (758)
... ......+.... +..| +.+..... ...+|+...-+ ..||+||+||++|+.++ ++..++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~l~-~~~P~lii~G~~D~~~~--~~~~~~ 261 (311)
T 2c7b_A 189 GVPTASLVEFGVAETTSLPIELMVWFGRQYLKRPEEAYD----FKASPLLADLG-GLPPALVVTAEYDPLRD--EGELYA 261 (311)
T ss_dssp SCCCHHHHHHHHCTTCSSCHHHHHHHHHHHCSSTTGGGS----TTTCGGGSCCT-TCCCEEEEEETTCTTHH--HHHHHH
T ss_pred cccccCCccHHHhccCCCCHHHHHHHHHHhCCCCccccC----cccCccccccc-CCCcceEEEcCCCCchH--HHHHHH
Confidence 100 00000011100 0111 11111000 12345433111 34469999999999886 778899
Q ss_pred HHHHhcCCCCceEEEEecCCCCCCCCC--C-hHHHHHHHHHHHHHHHHhcC
Q 004368 701 AKLREMKTDDNILLFKCELGAGHFSKS--G-RFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 701 ~~L~~~~~~~~~~~~~~~~~~gH~~~~--~-~~~~~~~~~~~~~fl~~~l~ 748 (758)
++|+..+.++++++++ +.+|++.. . .....+....+.+||.++++
T Consensus 262 ~~l~~~g~~~~~~~~~---g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (311)
T 2c7b_A 262 YKMKASGSRAVAVRFA---GMVHGFVSFYPFVDAGREALDLAAASIRSGLQ 309 (311)
T ss_dssp HHHHHTTCCEEEEEET---TCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCEEEEEeC---CCccccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 9999999888887776 89997641 1 12223334456899998875
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=187.95 Aligned_cols=242 Identities=17% Similarity=0.140 Sum_probs=161.3
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccC-CCC--CCChHHHHHHHcCcEEEEEecCCCCCC
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC-NDP--AFNSSRLSLLDRGFIFAIAQIRGGGEL 559 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~-~~~--~~~~~~~~l~~~G~~v~~~~~RG~g~~ 559 (758)
.+..+.+.+.+.+|..|.+.++.|++. .++.|+||++|||.... ... .|......|+++||+|+.+|+||+|++
T Consensus 79 ~~~~~~~~~~~~~g~~l~~~v~~p~~~---~~~~p~vv~iHGgg~~~g~~~~~~~~~~~~~la~~g~~vv~~d~r~~gg~ 155 (361)
T 1jkm_A 79 DVETSTETILGVDGNEITLHVFRPAGV---EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTA 155 (361)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEETTC---CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEET
T ss_pred CceeeeeeeecCCCCeEEEEEEeCCCC---CCCCeEEEEEcCCccccCCCcccchhHHHHHHHhCCCEEEEEecCCCCCC
Confidence 445677788888998899998888764 23679999999975222 222 344456788889999999999999744
Q ss_pred chhHHhcccccCCcChHhHHHHHHHHHHHcC---CCCCCcEEEEEeChhHHHHHHHHhh-----CCCceeEEEEcCCccc
Q 004368 560 GRQWYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNM-----RPDLFKAAVAAVPFVD 631 (758)
Q Consensus 560 G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~-----~p~~f~a~v~~~~~~d 631 (758)
.. .......+.|+.++++|+.++- ..| +|+++|+|+||.+++.++.+ .|++++++|+.+|++|
T Consensus 156 ~~-------~~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~~ 226 (361)
T 1jkm_A 156 EG-------HHPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYIS 226 (361)
T ss_dssp TE-------ECCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCC
T ss_pred CC-------CCCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCccc
Confidence 21 1223456789999999998762 234 99999999999999999988 7889999999999988
Q ss_pred hh---------hccC----CCCCCCChhh----hhcc-CCCCCHHHHHHHHhcCcc----cccCCCCCCeEEEeccCCCC
Q 004368 632 VL---------TTML----DPTIPLTTAE----WEEW-GDPWKEEFYFYMKSYSPV----DNVKAQNYPHILVTAGLNDP 689 (758)
Q Consensus 632 ~~---------~~~~----~~~~~~~~~~----~~e~-g~p~~~~~~~~l~~~sp~----~~i~~~~~P~~Li~~G~~D~ 689 (758)
.. .... .....+.... +..| +...... ....+|. ..+++ .||+||+||++|.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~~~~~l~~--l~P~Lii~G~~D~ 300 (361)
T 1jkm_A 227 GGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAE----DPIAWPYFASEDELRG--LPPFVVAVNELDP 300 (361)
T ss_dssp CCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTT----CTTTCGGGCCHHHHTT--CCCEEEEEETTCT
T ss_pred cccccccccccccCcchhhccCcccCHHHHHHHHHHhCCCCCCCC----CcccCccccChhhHcC--CCceEEEEcCcCc
Confidence 61 1000 0000000000 0111 1110000 0122343 12333 3359999999999
Q ss_pred CCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC-CCh---HHH-HHHHHHHHHHHHHhc
Q 004368 690 RVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK-SGR---FER-LREAAFTYTFLMRAL 747 (758)
Q Consensus 690 ~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~-~~~---~~~-~~~~~~~~~fl~~~l 747 (758)
.++ ++.+++++|++.+.++++++++ +++|++. ... ... .+....+.+||.++.
T Consensus 301 ~~~--~~~~~~~~l~~~g~~~~l~~~~---g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 301 LRD--EGIAFARRLARAGVDVAARVNI---GLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp THH--HHHHHHHHHHHTTCCEEEEEET---TCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred chh--hHHHHHHHHHHcCCCEEEEEeC---CCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 988 8999999999999888888876 8999754 111 222 223344678887764
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=200.74 Aligned_cols=241 Identities=14% Similarity=0.152 Sum_probs=166.2
Q ss_pred eeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCC----------------------ChHHHHHH
Q 004368 485 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF----------------------NSSRLSLL 542 (758)
Q Consensus 485 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~----------------------~~~~~~l~ 542 (758)
..+.+.+++.||++|.+.++.|++. ++.|+||+.|| |+....+.+ ....+.|+
T Consensus 40 ~~~~v~i~~~DG~~L~a~l~~P~~~----~~~P~vl~~~p-yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la 114 (560)
T 3iii_A 40 MEKDGTVEMRDGEKLYINIFRPNKD----GKFPVVMSADT-YGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFWV 114 (560)
T ss_dssp EEEEEEEECTTSCEEEEEEEECSSS----SCEEEEEEEES-SCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHHG
T ss_pred EEEEEEEECCCCcEEEEEEEecCCC----CCCCEEEEecC-CCCCcccccccccccccccccccccccccccCCCHHHHH
Confidence 4577899999999999999998753 67899999886 444322111 12367999
Q ss_pred HcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeE
Q 004368 543 DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKA 622 (758)
Q Consensus 543 ~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a 622 (758)
++||+|+.+|+||+|+++..|.. .+....+|+.++++||.+++++| +||+++|+|+||++++++++++|+.++|
T Consensus 115 ~~Gy~vv~~D~RG~G~S~G~~~~-----~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~a 188 (560)
T 3iii_A 115 PNDYVVVKVALRGSDKSKGVLSP-----WSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKA 188 (560)
T ss_dssp GGTCEEEEEECTTSTTCCSCBCT-----TSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEE
T ss_pred hCCCEEEEEcCCCCCCCCCcccc-----CChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEE
Confidence 99999999999999998876542 23467899999999999999887 8999999999999999999999999999
Q ss_pred EEEcCCccchhhccCC-CCCC-CCh-hhh------------------hcc-CCCCCHHHHHHHHhcCcccccCCCCCCeE
Q 004368 623 AVAAVPFVDVLTTMLD-PTIP-LTT-AEW------------------EEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHI 680 (758)
Q Consensus 623 ~v~~~~~~d~~~~~~~-~~~~-~~~-~~~------------------~e~-g~p~~~~~~~~l~~~sp~~~i~~~~~P~~ 680 (758)
+|+.+|+.|+.+.... ...+ ... ..| .++ ..|...+ +++..++ ++.++++| +
T Consensus 189 iv~~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d~---~W~~~~~--~~~~I~vP-v 262 (560)
T 3iii_A 189 MIPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFDD---FWKQRQV--PLSQIKTP-L 262 (560)
T ss_dssp EEEESCCCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSCH---HHHTTBC--CGGGCCSC-E
T ss_pred EEecCCcccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcch---HhhccCC--chhhCCCC-E
Confidence 9999999997642110 0010 000 000 011 2221111 3455555 57788998 9
Q ss_pred EEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCC
Q 004368 681 LVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLP 751 (758)
Q Consensus 681 Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 751 (758)
|+++|..|..+...++.+.+++|+..+ +.+.+. +.+|.. ..-........++||+++|+...
T Consensus 263 l~v~Gw~D~~~~~~g~l~~y~~l~~~~---k~l~ih---~~~~~~---~~~~~~~~~~~~~wfD~~LkG~~ 324 (560)
T 3iii_A 263 LTCASWSTQGLHNRGSFEGFKQAASEE---KWLYVH---GRKEWE---SYYARENLERQKSFFDFYLKEEN 324 (560)
T ss_dssp EEEEEGGGTTTTHHHHHHHHHHCCCSS---EEEEEE---SSCHHH---HHHSHHHHHHHHHHHHHHTSCCC
T ss_pred EEeCCcCCCcccchhHHHHHHhccccC---cEEEEC---CCCCcC---cccChhHHHHHHHHHHHHhCCCC
Confidence 999999998666677777777775432 233332 222321 00001223346899999997553
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=179.33 Aligned_cols=239 Identities=15% Similarity=0.147 Sum_probs=161.6
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHh
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 565 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~ 565 (758)
.+.+.++ .||.+|.++++.|++ .+.|+||++||..+......|......|+++||.|+.+|+||.|........
T Consensus 22 ~~~~~~~-~~g~~l~~~~~~p~~-----~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~ 95 (270)
T 3pfb_A 22 MATITLE-RDGLQLVGTREEPFG-----EIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFEN 95 (270)
T ss_dssp EEEEEEE-ETTEEEEEEEEECSS-----SSEEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCGGG
T ss_pred ceEEEec-cCCEEEEEEEEcCCC-----CCCCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEccccccCCCCCCCc
Confidence 4555554 589999999876653 2479999999976654333355566788899999999999999877543221
Q ss_pred cccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCC-----
Q 004368 566 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPT----- 640 (758)
Q Consensus 566 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~----- 640 (758)
..-....+|+.++++++.++.. .++++++|+|+||++++.++.++|++++++|+.+|..+.........
T Consensus 96 ----~~~~~~~~d~~~~i~~l~~~~~--~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~ 169 (270)
T 3pfb_A 96 ----MTVLNEIEDANAILNYVKTDPH--VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVT 169 (270)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTCTT--EEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHHHTEETTEE
T ss_pred ----cCHHHHHHhHHHHHHHHHhCcC--CCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhhhhhhhccc
Confidence 1112346889999999987643 36999999999999999999999999999999999877443111000
Q ss_pred -CCCChhhhhcc-CCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEec
Q 004368 641 -IPLTTAEWEEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 718 (758)
Q Consensus 641 -~~~~~~~~~e~-g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~ 718 (758)
.+........+ ...........+...++...+.++++| +|+++|.+|..|++..+.++++++. ..++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~-- 242 (270)
T 3pfb_A 170 YNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKP-VCLIHGTDDTVVSPNASKKYDQIYQ----NSTLHLIE-- 242 (270)
T ss_dssp CCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTTCCSC-EEEEEETTCSSSCTHHHHHHHHHCS----SEEEEEET--
T ss_pred cCcccccccccccccccchhHhhcccccCHHHHHhhCCcc-EEEEEcCCCCCCCHHHHHHHHHhCC----CCeEEEcC--
Confidence 00000000011 111123344555666777778888898 9999999999999999988877753 34566665
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 719 LGAGHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 719 ~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
++||.........+.+ .+.+||.++
T Consensus 243 -~~gH~~~~~~~~~~~~--~i~~fl~~~ 267 (270)
T 3pfb_A 243 -GADHCFSDSYQKNAVN--LTTDFLQNN 267 (270)
T ss_dssp -TCCTTCCTHHHHHHHH--HHHHHHC--
T ss_pred -CCCcccCccchHHHHH--HHHHHHhhc
Confidence 8999876433333332 256677553
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=177.05 Aligned_cols=206 Identities=18% Similarity=0.186 Sum_probs=151.9
Q ss_pred CceeEEEEeeCC--CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCc
Q 004368 483 NYFTERKWASAS--DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG 560 (758)
Q Consensus 483 ~~~~~~~~~~s~--dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G 560 (758)
.+.++.+.+++. +|. ..+.+++|... .+++.|+||++||..+.. ..|......|+++||.|+.+|+||.|...
T Consensus 22 ~~~~~~~~~~~~~~~~~-~~~~l~~p~~~--~~~~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~g~~~ 96 (262)
T 1jfr_A 22 PYATSQTSVSSLVASGF-GGGTIYYPTST--ADGTFGAVVISPGFTAYQ--SSIAWLGPRLASQGFVVFTIDTNTTLDQP 96 (262)
T ss_dssp SSCEEEEEECTTTCSSS-CCEEEEEESCC--TTCCEEEEEEECCTTCCG--GGTTTHHHHHHTTTCEEEEECCSSTTCCH
T ss_pred CCCccceEecceeccCC-CceeEEecCCC--CCCCCCEEEEeCCcCCCc--hhHHHHHHHHHhCCCEEEEeCCCCCCCCC
Confidence 455566666655 333 24566777653 245679999999965443 34667778888999999999999988754
Q ss_pred hhHHhcccccCCcChHhHHHHHHHHHHH----cCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc
Q 004368 561 RQWYENGKFLKKKNTFTDFIACAEYLIK----NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM 636 (758)
Q Consensus 561 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~----~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~ 636 (758)
.. ...|+.++++++.+ ...++.++++++|+|+||++++.++.++|+ ++++|+.+|+..
T Consensus 97 ~~------------~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~----- 158 (262)
T 1jfr_A 97 DS------------RGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT----- 158 (262)
T ss_dssp HH------------HHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS-----
T ss_pred ch------------hHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc-----
Confidence 32 23688899999988 445678999999999999999999999998 899998777422
Q ss_pred CCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChH-HHHHHHHHHhcCCCCceEEE
Q 004368 637 LDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSE-PAKFVAKLREMKTDDNILLF 715 (758)
Q Consensus 637 ~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~-~~~~~~~L~~~~~~~~~~~~ 715 (758)
...+.+++.| +|++||++|..|++.+ +.++++++.. +.+.+++++
T Consensus 159 --------------------------------~~~~~~~~~P-~l~i~G~~D~~~~~~~~~~~~~~~l~~-~~~~~~~~~ 204 (262)
T 1jfr_A 159 --------------------------------DKTWPELRTP-TLVVGADGDTVAPVATHSKPFYESLPG-SLDKAYLEL 204 (262)
T ss_dssp --------------------------------CCCCTTCCSC-EEEEEETTCSSSCTTTTHHHHHHHSCT-TSCEEEEEE
T ss_pred --------------------------------cccccccCCC-EEEEecCccccCCchhhHHHHHHHhhc-CCCceEEEe
Confidence 1123344677 9999999999999998 9999999853 445566666
Q ss_pred EecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCC
Q 004368 716 KCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 716 ~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
+ ++||.........+. ..+.+||.++++..
T Consensus 205 ~---~~~H~~~~~~~~~~~--~~i~~fl~~~l~~~ 234 (262)
T 1jfr_A 205 R---GASHFTPNTSDTTIA--KYSISWLKRFIDSD 234 (262)
T ss_dssp T---TCCTTGGGSCCHHHH--HHHHHHHHHHHSCC
T ss_pred C---CCCcCCcccchHHHH--HHHHHHHHHHhcCc
Confidence 5 899986543323222 33689999998755
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6e-18 Score=174.25 Aligned_cols=216 Identities=14% Similarity=0.033 Sum_probs=149.1
Q ss_pred eeEEEEeeCC-CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCC-----hHHHHHHHc----CcEEEEEecC
Q 004368 485 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN-----SSRLSLLDR----GFIFAIAQIR 554 (758)
Q Consensus 485 ~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~-----~~~~~l~~~----G~~v~~~~~R 554 (758)
..+++.+.+. +|..+++.++.|++. ..+++.|+||++||+.+....+... .....|+++ ||+|+.+|+|
T Consensus 31 ~~~~~~~~s~~~~~~~~~~v~~P~~~-~~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~~d~~ 109 (268)
T 1jjf_A 31 QVVNISYFSTATNSTRPARVYLPPGY-SKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTN 109 (268)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTC-CTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCC
T ss_pred eEEEEEEeccccCCceEEEEEeCCCC-CCCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEEeCCC
Confidence 4566666654 678899999999886 5567899999999976554332111 124566665 5999999999
Q ss_pred CCCCC-chhHHhcccccCCcChHhH-HHHHHHHHHHcCCC--CCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc
Q 004368 555 GGGEL-GRQWYENGKFLKKKNTFTD-FIACAEYLIKNCYC--TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 555 G~g~~-G~~~~~~~~~~~~~~~~~D-~~~~~~~l~~~~~~--d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
+.+.. ...|. ...+| +.++++++.++..+ |+++++|+|+|+||++++.++.++|++|+++++.+|..
T Consensus 110 ~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~ 180 (268)
T 1jjf_A 110 AAGPGIADGYE---------NFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAP 180 (268)
T ss_dssp CCCTTCSCHHH---------HHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCT
T ss_pred CCCccccccHH---------HHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEeCCCC
Confidence 87532 11111 11233 34466677655444 89999999999999999999999999999999999976
Q ss_pred chhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCC
Q 004368 631 DVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 710 (758)
Q Consensus 631 d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~ 710 (758)
++.... ..++... .. ...+.|++||+||++|+.|+ .+++++++|++.+.++
T Consensus 181 ~~~~~~------------~~~~~~~-~~--------------~~~~~pp~li~~G~~D~~v~--~~~~~~~~l~~~g~~~ 231 (268)
T 1jjf_A 181 NTYPNE------------RLFPDGG-KA--------------AREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINH 231 (268)
T ss_dssp TSCCHH------------HHCTTTT-HH--------------HHHHCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCC
T ss_pred CCCchh------------hhcCcch-hh--------------hhhcCceEEEEecCCCCCcc--HHHHHHHHHHHCCCce
Confidence 542100 1111110 00 01235679999999999988 4789999999999988
Q ss_pred ceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 711 NILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 711 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
++++++ +++|... ...+...+.+.||.++
T Consensus 232 ~~~~~~---g~~H~~~----~~~~~~~~~~~~l~~~ 260 (268)
T 1jjf_A 232 VYWLIQ---GGGHDFN----VWKPGLWNFLQMADEA 260 (268)
T ss_dssp EEEEET---TCCSSHH----HHHHHHHHHHHHHHHH
T ss_pred EEEEcC---CCCcCHh----HHHHHHHHHHHHHHhc
Confidence 887776 8999642 1223345567888765
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=171.79 Aligned_cols=207 Identities=14% Similarity=0.071 Sum_probs=151.2
Q ss_pred eeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCcc---CCCCCCChHHHHHHHcCcEEEEEecCCCCCCch
Q 004368 485 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI---CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR 561 (758)
Q Consensus 485 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~---~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~ 561 (758)
..+.+.+++.|| ++.++++.|++. . .++.|+||++||+... .....|......|+++||.|+.+|+||.|....
T Consensus 9 ~~~~~~~~~~~g-~~~~~~~~p~~~-~-~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~ 85 (220)
T 2fuk_A 9 ESAALTLDGPVG-PLDVAVDLPEPD-V-AVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAG 85 (220)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTT-S-CCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCS
T ss_pred cceEEEEeCCCC-eEEEEEEeCCCC-C-ccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCCCCCCC
Confidence 357888999999 899998877642 1 1458999999995321 122223445567888899999999999987654
Q ss_pred hHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCC
Q 004368 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI 641 (758)
Q Consensus 562 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~ 641 (758)
.+ .......+|+.++++++.++. +.++++++|+|+||.+++.++.++ .++++|+.+|..+...
T Consensus 86 ~~------~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~~------- 148 (220)
T 2fuk_A 86 SF------DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD------- 148 (220)
T ss_dssp CC------CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC-------
T ss_pred Cc------ccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccchh-------
Confidence 32 122346789999999999874 678999999999999999999887 7899999998765321
Q ss_pred CCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCC
Q 004368 642 PLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 721 (758)
Q Consensus 642 ~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 721 (758)
+.. +.. ..| +|+++|++|..|++.++.+++++++ .+.+++.++ ++
T Consensus 149 ------------------------~~~---~~~-~~p-~l~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~~~---~~ 193 (220)
T 2fuk_A 149 ------------------------FSD---VQP-PAQ-WLVIQGDADEIVDPQAVYDWLETLE---QQPTLVRMP---DT 193 (220)
T ss_dssp ------------------------CTT---CCC-CSS-EEEEEETTCSSSCHHHHHHHHTTCS---SCCEEEEET---TC
T ss_pred ------------------------hhh---ccc-CCc-EEEEECCCCcccCHHHHHHHHHHhC---cCCcEEEeC---CC
Confidence 001 111 356 9999999999999999988887774 345666665 89
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 722 GHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 722 gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
||...... ..+. ..+.+||.++|..
T Consensus 194 ~H~~~~~~-~~~~--~~i~~~l~~~l~~ 218 (220)
T 2fuk_A 194 SHFFHRKL-IDLR--GALQHGVRRWLPA 218 (220)
T ss_dssp CTTCTTCH-HHHH--HHHHHHHGGGCSS
T ss_pred CceehhhH-HHHH--HHHHHHHHHHhhc
Confidence 99876543 2222 2357899888753
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.8e-19 Score=179.13 Aligned_cols=245 Identities=15% Similarity=0.049 Sum_probs=155.5
Q ss_pred ceeEEEEeeC-CCCeEEEEEEEeeccccc----cCCCCCEEEEecCCCccCCCCCCCh--HHHHHHH-cCcEEEEEecCC
Q 004368 484 YFTERKWASA-SDGTQIPICIVYRKNLVK----LDGSDPLLLYGYGSYEICNDPAFNS--SRLSLLD-RGFIFAIAQIRG 555 (758)
Q Consensus 484 ~~~~~~~~~s-~dG~~i~~~l~~p~~~~~----~~~~~P~vl~~hGg~~~~~~~~~~~--~~~~l~~-~G~~v~~~~~RG 555 (758)
+..+.+.+.+ .+|..+++.++.|++. . ++++.|+||++||+.+... .|.. ....+++ .|++|+.+++|+
T Consensus 5 m~~~~~~~~s~~~~~~~~~~v~~P~~~-~~~~~~~~~~p~vv~~HG~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 81 (263)
T 2uz0_A 5 PAVMKIEYYSQVLDMEWGVNVLYPDAN-RVEEPECEDIPVLYLLHGMSGNHN--SWLKRTNVERLLRGTNLIVVMPNTSN 81 (263)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECC----------CCBCEEEEECCTTCCTT--HHHHHSCHHHHTTTCCCEEEECCCTT
T ss_pred ceEeEEEEechhhCCceeEEEEeCCCc-cccCCcCCCCCEEEEECCCCCCHH--HHHhccCHHHHHhcCCeEEEEECCCC
Confidence 3455666664 4688999999999864 2 3567899999999765433 2333 2345544 799999999987
Q ss_pred CCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhc
Q 004368 556 GGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 635 (758)
Q Consensus 556 ~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~ 635 (758)
++...... +. .......+|+...++.+..+..+|+++++++|+|+||++++.++. +|++|+++|+.+|..++...
T Consensus 82 ~~~~~~~~---~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~~~~~~~~ 156 (263)
T 2uz0_A 82 GWYTDTQY---GF-DYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSGALSFQNF 156 (263)
T ss_dssp STTSBCTT---SC-BHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESCCCCSSSC
T ss_pred CccccCCC---cc-cHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecCCcchhhc
Confidence 75432110 00 000111245555555544324568899999999999999999988 89999999999999876542
Q ss_pred cCCCCCCCChhhh-hccCCCCCHHHHHHHHhcCcccccCCCCC-CeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceE
Q 004368 636 MLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKAQNY-PHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 713 (758)
Q Consensus 636 ~~~~~~~~~~~~~-~e~g~p~~~~~~~~l~~~sp~~~i~~~~~-P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 713 (758)
............+ ..++.+... .+..++|...+.+... +|+||+||++|..|+ ++.+++++|++.+.+.+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~~~~~~l~~~g~~~~~~ 230 (263)
T 2uz0_A 157 SPESQNLGSPAYWRGVFGEIRDW----TTSPYSLESLAKKSDKKTKLWAWCGEQDFLYE--ANNLAVKNLKKLGFDVTYS 230 (263)
T ss_dssp CGGGTTCSCHHHHHHHHCCCSCT----TTSTTSHHHHGGGCCSCSEEEEEEETTSTTHH--HHHHHHHHHHHTTCEEEEE
T ss_pred cccccccccchhHHHHcCChhhh----ccccCCHHHHHHhccCCCeEEEEeCCCchhhH--HHHHHHHHHHHCCCCeEEE
Confidence 1000001111111 123333211 1235566666665532 459999999999884 6899999999998877777
Q ss_pred EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCC
Q 004368 714 LFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 714 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
+++ + ||... ..-+...+.++||.++|+.+
T Consensus 231 ~~~---g-~H~~~----~~~~~~~~~~~~l~~~l~~~ 259 (263)
T 2uz0_A 231 HSA---G-THEWY----YWEKQLEVFLTTLPIDFKLE 259 (263)
T ss_dssp EES---C-CSSHH----HHHHHHHHHHHHSSSCCCCC
T ss_pred ECC---C-CcCHH----HHHHHHHHHHHHHHhhccch
Confidence 775 7 99631 11233455789999888865
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-19 Score=185.57 Aligned_cols=241 Identities=12% Similarity=0.117 Sum_probs=153.3
Q ss_pred EEEEee-CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCC-CChHHHHHHHcCcEEEEEecC--CCCC----
Q 004368 487 ERKWAS-ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQIR--GGGE---- 558 (758)
Q Consensus 487 ~~~~~~-s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~~R--G~g~---- 558 (758)
+.+.+. ..+|.++++.++.|++. . +++.|+||++||+.+....+. +......+.++|++|+.+|.+ |.+.
T Consensus 23 ~~~~~~s~~~~~~~~~~v~~P~~~-~-~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~~~~~ 100 (283)
T 4b6g_A 23 QVWAHHAQTLQCEMKFAVYLPNNP-E-NRPLGVIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPNDD 100 (283)
T ss_dssp EEEEEEETTTTEEEEEEEEECCCT-T-CCCEEEEEEECCTTCCSHHHHHHSCTHHHHHHHTCEEEEECSSCCSTTSCCCS
T ss_pred EEEEEechhhCCceEEEEEeCCCC-C-CCCCCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEEeccccccccccccc
Confidence 444444 45789999999999876 3 577999999999765432210 112234566789999999964 4331
Q ss_pred -----CchhHHhccccc--CCcChHhHH-H-HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 559 -----LGRQWYENGKFL--KKKNTFTDF-I-ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 559 -----~G~~~~~~~~~~--~~~~~~~D~-~-~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
.|..|+...... .....+.+. . +.+.++.+. +.++++++|+|+|+||++++.++.++|++|+++++.+|+
T Consensus 101 ~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~~ 179 (283)
T 4b6g_A 101 AYDLGQSAGFYLNATEQPWAANYQMYDYILNELPRLIEKH-FPTNGKRSIMGHSMGGHGALVLALRNQERYQSVSAFSPI 179 (283)
T ss_dssp STTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHH-SCEEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEEESCC
T ss_pred cccccCCCcccccCccCcccchhhHHHHHHHHHHHHHHHh-CCCCCCeEEEEEChhHHHHHHHHHhCCccceeEEEECCc
Confidence 122222211110 011122222 2 233444333 335789999999999999999999999999999999998
Q ss_pred cchhhccCCCCCCCChhhh-hccCCCCCHHHHHHHHhcCcccccCCC-CCCeEEEeccCCCCCCCC-hHHHHHHHHHHhc
Q 004368 630 VDVLTTMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMY-SEPAKFVAKLREM 706 (758)
Q Consensus 630 ~d~~~~~~~~~~~~~~~~~-~e~g~p~~~~~~~~l~~~sp~~~i~~~-~~P~~Li~~G~~D~~V~~-~~~~~~~~~L~~~ 706 (758)
+++... ++....+ ..+|.. +. .+..++|...+++. ..||+||+||+.|..|+. .++.+++++|++.
T Consensus 180 ~~~~~~------~~~~~~~~~~~g~~--~~---~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~~~~l~~~ 248 (283)
T 4b6g_A 180 LSPSLV------PWGEKAFTAYLGKD--RE---KWQQYDANSLIQQGYKVQGMRIDQGLEDEFLPTQLRTEDFIETCRAA 248 (283)
T ss_dssp CCGGGS------HHHHHHHHHHHCSC--GG---GGGGGCHHHHHHHTCCCSCCEEEEETTCTTHHHHTCHHHHHHHHHHH
T ss_pred cccccC------cchhhhHHhhcCCc--hH---HHHhcCHHHHHHhcccCCCEEEEecCCCccCcchhhHHHHHHHHHHc
Confidence 875431 1111111 112321 11 12345565544444 344599999999999986 3389999999999
Q ss_pred CCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 707 KTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 707 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
+.++++++++ +++|.. ........+.+.|+.++|+
T Consensus 249 g~~~~~~~~~---g~~H~~----~~~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 249 NQPVDVRFHK---GYDHSY----YFIASFIGEHIAYHAAFLK 283 (283)
T ss_dssp TCCCEEEEET---TCCSSH----HHHHHHHHHHHHHHHTTCC
T ss_pred CCCceEEEeC---CCCcCH----hHHHHHHHHHHHHHHHhcC
Confidence 9998888886 889963 1222334556889988764
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=181.55 Aligned_cols=193 Identities=17% Similarity=0.214 Sum_probs=147.2
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 573 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~ 573 (758)
.+|.. .+.+++|... .+.|+||++||..+... .|......|+++||.|+.+|+||.|+....+
T Consensus 79 ~~g~~-~~~~~~p~~~----~~~p~vv~~HG~~~~~~--~~~~~~~~la~~G~~vv~~d~~g~g~s~~~~---------- 141 (306)
T 3vis_A 79 ADGFG-GGTIYYPREN----NTYGAIAISPGYTGTQS--SIAWLGERIASHGFVVIAIDTNTTLDQPDSR---------- 141 (306)
T ss_dssp CSSSC-CEEEEEESSC----SCEEEEEEECCTTCCHH--HHHHHHHHHHTTTEEEEEECCSSTTCCHHHH----------
T ss_pred cCCCc-ceEEEeeCCC----CCCCEEEEeCCCcCCHH--HHHHHHHHHHhCCCEEEEecCCCCCCCcchH----------
Confidence 55653 3566778764 26899999999654322 3555667888999999999999988765432
Q ss_pred ChHhHHHHHHHHHHHc------CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhh
Q 004368 574 NTFTDFIACAEYLIKN------CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAE 647 (758)
Q Consensus 574 ~~~~D~~~~~~~l~~~------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~ 647 (758)
.+|+.++++++.+. ..+|+++|+++|+|+||.+++.++.++|+ ++++|+.+|+.+
T Consensus 142 --~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~---------------- 202 (306)
T 3vis_A 142 --ARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL---------------- 202 (306)
T ss_dssp --HHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS----------------
T ss_pred --HHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC----------------
Confidence 26899999999997 77889999999999999999999999997 888888877533
Q ss_pred hhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCCh-HHHHHHHHHHhcCCCCceEEEEecCCCCCCCC
Q 004368 648 WEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYS-EPAKFVAKLREMKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 648 ~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~-~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 726 (758)
...+.+++.| +|+++|++|..|++. ++++++++++..+ +.++++++ +.||...
T Consensus 203 ---------------------~~~~~~~~~P-~lii~G~~D~~~~~~~~~~~~~~~l~~~~-~~~~~~~~---g~gH~~~ 256 (306)
T 3vis_A 203 ---------------------NKSWRDITVP-TLIIGAEYDTIASVTLHSKPFYNSIPSPT-DKAYLELD---GASHFAP 256 (306)
T ss_dssp ---------------------CCCCTTCCSC-EEEEEETTCSSSCTTTTHHHHHHTCCTTS-CEEEEEET---TCCTTGG
T ss_pred ---------------------ccccccCCCC-EEEEecCCCcccCcchhHHHHHHHhccCC-CceEEEEC---CCCccch
Confidence 0122334566 999999999999998 7999999988766 66667775 8999865
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCC
Q 004368 727 SGRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 727 ~~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
......+. ..+.+||.++++..
T Consensus 257 ~~~~~~~~--~~i~~fl~~~l~~~ 278 (306)
T 3vis_A 257 NITNKTIG--MYSVAWLKRFVDED 278 (306)
T ss_dssp GSCCHHHH--HHHHHHHHHHHSCC
T ss_pred hhchhHHH--HHHHHHHHHHccCc
Confidence 43333333 23689999998754
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-18 Score=181.56 Aligned_cols=248 Identities=13% Similarity=0.083 Sum_probs=164.3
Q ss_pred CceeEEE-EeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCch
Q 004368 483 NYFTERK-WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR 561 (758)
Q Consensus 483 ~~~~~~~-~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~ 561 (758)
.+..+++ .+.+.||.+|.+.++.|.+ ++.|+||++||..+... .|......|+++||.|+.+|+||.|....
T Consensus 31 ~~~~~~~~~~~~~dg~~l~~~~~~p~~-----~~~p~vv~~HG~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G~G~S~~ 103 (342)
T 3hju_A 31 SIPYQDLPHLVNADGQYLFCRYWKPTG-----TPKALIFVSHGAGEHSG--RYEELARMLMGLDLLVFAHDHVGHGQSEG 103 (342)
T ss_dssp SCBTTSSCEEECTTSCEEEEEEECCSS-----CCSEEEEEECCTTCCGG--GGHHHHHHHHTTTEEEEEECCTTSTTSCS
T ss_pred CcccccCceEEccCCeEEEEEEeCCCC-----CCCcEEEEECCCCcccc--hHHHHHHHHHhCCCeEEEEcCCCCcCCCC
Confidence 3334445 6778899999998776653 35799999999755433 46667778888899999999999987653
Q ss_pred hHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccC----
Q 004368 562 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML---- 637 (758)
Q Consensus 562 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~---- 637 (758)
... ....-....+|+.+++++|..+ .+.++++++|+|+||++++.++.++|++++++|+.+|+.+......
T Consensus 104 ~~~---~~~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 178 (342)
T 3hju_A 104 ERM---VVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFK 178 (342)
T ss_dssp STT---CCSCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSHHH
T ss_pred cCC---CcCcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhHHH
Confidence 211 1111223468999999999877 4567999999999999999999999999999999999866422110
Q ss_pred ----------CCCCCCChhhhhccCCCCCHHHHHHHHh---------------------cCcccccCCCCCCeEEEeccC
Q 004368 638 ----------DPTIPLTTAEWEEWGDPWKEEFYFYMKS---------------------YSPVDNVKAQNYPHILVTAGL 686 (758)
Q Consensus 638 ----------~~~~~~~~~~~~e~g~p~~~~~~~~l~~---------------------~sp~~~i~~~~~P~~Li~~G~ 686 (758)
.......... ..+- ..+.+....+.. .+....+.++++| +|+++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-vlii~G~ 255 (342)
T 3hju_A 179 VLAAKVLNLVLPNLSLGPID-SSVL-SRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVP-FLLLQGS 255 (342)
T ss_dssp HHHHHHHHHHCTTCBCCCCC-GGGS-CSCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGCCSC-EEEEEET
T ss_pred HHHHHHHHHhccccccCccc-cccc-ccchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhCCcC-EEEEEeC
Confidence 0000000000 0000 011111111110 0112345666788 9999999
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHH-HHHHHHHHHHHHHHhcCCC
Q 004368 687 NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFE-RLREAAFTYTFLMRALSML 750 (758)
Q Consensus 687 ~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~-~~~~~~~~~~fl~~~l~~~ 750 (758)
+|..|++.++.++++.+... ..++++++ ++||.......+ ..+.....++||.+++...
T Consensus 256 ~D~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~gH~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (342)
T 3hju_A 256 ADRLCDSKGAYLLMELAKSQ--DKTLKIYE---GAYHVLHKELPEVTNSVFHEINMWVSQRTATA 315 (342)
T ss_dssp TCSSSCHHHHHHHHHHCCCS--SEEEEEET---TCCSCGGGSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCcccChHHHHHHHHHcCCC--CceEEEEC---CCCchhhcCChHHHHHHHHHHHHHHhcccCCC
Confidence 99999999999988877532 34566665 899987654433 2333455789999988543
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=178.68 Aligned_cols=199 Identities=15% Similarity=0.174 Sum_probs=147.8
Q ss_pred EeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCc-cCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccc
Q 004368 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE-ICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGK 568 (758)
Q Consensus 490 ~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~ 568 (758)
.++..+|..+++.++.|++ ++.|+||++|||.. ......|......|+++||.|+.+|+||++++..
T Consensus 42 ~i~~~~~~~~~~~~~~p~~-----~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~~~~~~~~------- 109 (262)
T 2pbl_A 42 NLSYGEGDRHKFDLFLPEG-----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVRI------- 109 (262)
T ss_dssp EEESSSSTTCEEEEECCSS-----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSCH-------
T ss_pred ccccCCCCCceEEEEccCC-----CCCCEEEEEcCcccccCChHHHHHHHHHHHhCCCEEEEeCCCCCCCCCh-------
Confidence 3443455566777666653 46799999999752 2333456667788889999999999999876432
Q ss_pred ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC------CCceeEEEEcCCccchhhccCCCCCC
Q 004368 569 FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR------PDLFKAAVAAVPFVDVLTTMLDPTIP 642 (758)
Q Consensus 569 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~~~~d~~~~~~~~~~~ 642 (758)
....+|+.+++++|..+.. ++++++|+|+||++++.++.++ |++++++|+.+|+.|+......
T Consensus 110 ----~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~~~~~---- 178 (262)
T 2pbl_A 110 ----SEITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRT---- 178 (262)
T ss_dssp ----HHHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGS----
T ss_pred ----HHHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchHHHhh----
Confidence 1235899999999988653 7999999999999999999887 8899999999999885433210
Q ss_pred CChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCC
Q 004368 643 LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 722 (758)
Q Consensus 643 ~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g 722 (758)
... ..++. .. ..+...+|...+.++.+| +|++||++|..|++.++.++++++. .++++++ ++|
T Consensus 179 ~~~---~~~~~--~~---~~~~~~~~~~~~~~~~~P-~lii~G~~D~~~~~~~~~~~~~~~~-----~~~~~~~---~~~ 241 (262)
T 2pbl_A 179 SMN---EKFKM--DA---DAAIAESPVEMQNRYDAK-VTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAF---EKH 241 (262)
T ss_dssp TTH---HHHCC--CH---HHHHHTCGGGCCCCCSCE-EEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEET---TCC
T ss_pred hhh---hhhCC--CH---HHHHhcCcccccCCCCCC-EEEEEeCCCCcccHHHHHHHHHHhC-----CeEEEeC---CCC
Confidence 000 11111 22 233567888888888887 9999999999999999999999987 5566665 899
Q ss_pred CCCCCC
Q 004368 723 HFSKSG 728 (758)
Q Consensus 723 H~~~~~ 728 (758)
|.....
T Consensus 242 H~~~~~ 247 (262)
T 2pbl_A 242 HFNVIE 247 (262)
T ss_dssp TTTTTG
T ss_pred cchHHh
Confidence 976543
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-18 Score=177.94 Aligned_cols=232 Identities=18% Similarity=0.178 Sum_probs=156.1
Q ss_pred eeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCcc-CCCCCCChHHHHHH-HcCcEEEEEecCCCCCCchh
Q 004368 485 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLL-DRGFIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 485 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~-~~G~~v~~~~~RG~g~~G~~ 562 (758)
.++.+.+++.|| .|++.++ +. .++.|+||++|||... .....+......|+ +.||.|+.+|+||+|+...
T Consensus 55 ~~~~~~i~~~~g-~i~~~~y-~~-----~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~Vv~~dyrg~g~~~~- 126 (311)
T 1jji_A 55 RVEDRTIKGRNG-DIRVRVY-QQ-----KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHKF- 126 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEE-ES-----SSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSCT-
T ss_pred eEEEEEecCCCC-cEEEEEE-cC-----CCCceEEEEECCcccccCChhHhHHHHHHHHHHhCCEEEEecCCCCCCCCC-
Confidence 478888888888 7999876 42 2467999999997532 22234555666777 5799999999999987542
Q ss_pred HHhcccccCCcChHhHHHHHHHHHHHcC---CCCCCcEEEEEeChhHHHHHHHHhhCCCc----eeEEEEcCCccchhhc
Q 004368 563 WYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMRPDL----FKAAVAAVPFVDVLTT 635 (758)
Q Consensus 563 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~~~~d~~~~ 635 (758)
....+|+.++++|+.+.. .+|+++|+++|+|+||.+++.++.++|+. ++++|+.+|++|....
T Consensus 127 ----------p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~ 196 (311)
T 1jji_A 127 ----------PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAP 196 (311)
T ss_dssp ----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSC
T ss_pred ----------CCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCCC
Confidence 234689999999998752 46788999999999999999998887765 9999999999885321
Q ss_pred c-----CCCCCC-CChhh----hhcc-CCCCCHHHHHHHHhcCccc-ccCCCCCCeEEEeccCCCCCCCChHHHHHHHHH
Q 004368 636 M-----LDPTIP-LTTAE----WEEW-GDPWKEEFYFYMKSYSPVD-NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKL 703 (758)
Q Consensus 636 ~-----~~~~~~-~~~~~----~~e~-g~p~~~~~~~~l~~~sp~~-~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L 703 (758)
. ...... +.... +..| +.+.+.. ....+|+. .++ ..||+||+||++|+.++ ++.+++++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~~l~--~~~P~li~~G~~D~l~~--~~~~~~~~l 268 (311)
T 1jji_A 197 TPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKF----NPLASVIFADLE--NLPPALIITAEYDPLRD--EGEVFGQML 268 (311)
T ss_dssp CHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGG----CTTTSGGGSCCT--TCCCEEEEEEEECTTHH--HHHHHHHHH
T ss_pred CccHHHhcCCCccCCHHHHHHHHHHhCCCCccCC----CcccCccccccc--CCChheEEEcCcCcchH--HHHHHHHHH
Confidence 0 000000 11100 0111 1110000 01234543 222 35679999999999884 788999999
Q ss_pred HhcCCCCceEEEEecCCCCCCCCCC---hHHHHHHHHHHHHHHHH
Q 004368 704 REMKTDDNILLFKCELGAGHFSKSG---RFERLREAAFTYTFLMR 745 (758)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~ 745 (758)
++.+.++++++++ +.+|++... ....-+....+.+||.+
T Consensus 269 ~~~g~~~~~~~~~---g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 269 RRAGVEASIVRYR---GVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp HHTTCCEEEEEEE---EEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred HHcCCCEEEEEEC---CCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 9999998888887 889976321 12222334446677753
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-18 Score=185.92 Aligned_cols=238 Identities=13% Similarity=0.071 Sum_probs=158.2
Q ss_pred ceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhH
Q 004368 484 YFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 563 (758)
Q Consensus 484 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~ 563 (758)
...+++.++. +|..|+++++.|++. ++.|+||++||..+... ..+......|+++||.|+.+|+||.|+....
T Consensus 166 ~~~~~v~i~~-~g~~l~~~~~~P~~~----~~~P~vv~~hG~~~~~~-~~~~~~~~~l~~~G~~V~~~D~~G~G~s~~~- 238 (415)
T 3mve_A 166 YIIKQLEIPF-EKGKITAHLHLTNTD----KPHPVVIVSAGLDSLQT-DMWRLFRDHLAKHDIAMLTVDMPSVGYSSKY- 238 (415)
T ss_dssp SEEEEEEEEC-SSSEEEEEEEESCSS----SCEEEEEEECCTTSCGG-GGHHHHHHTTGGGTCEEEEECCTTSGGGTTS-
T ss_pred CCeEEEEEEE-CCEEEEEEEEecCCC----CCCCEEEEECCCCccHH-HHHHHHHHHHHhCCCEEEEECCCCCCCCCCC-
Confidence 3567888887 788999998888653 56899999999543322 2233334667789999999999998865421
Q ss_pred HhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccC--CCCC
Q 004368 564 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML--DPTI 641 (758)
Q Consensus 564 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~--~~~~ 641 (758)
...........++++++...+.+|+++|+++|+|+||++++.++..+|++++++|+.+|+++...... ....
T Consensus 239 ------~~~~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~ 312 (415)
T 3mve_A 239 ------PLTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQM 312 (415)
T ss_dssp ------CCCSCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHHHHTTS
T ss_pred ------CCCCCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHHHHHHh
Confidence 11111123345678888888888999999999999999999999999999999999999865322100 0111
Q ss_pred CCChhhh--hccCCC-C-CHHHHHHHHhcCcccc----cCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceE
Q 004368 642 PLTTAEW--EEWGDP-W-KEEFYFYMKSYSPVDN----VKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 713 (758)
Q Consensus 642 ~~~~~~~--~e~g~p-~-~~~~~~~l~~~sp~~~----i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 713 (758)
+...... ..+|.. . ..+....+..+++... +.++++| +|++||++|..||+.++.++++ .+.+.+++
T Consensus 313 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-vLii~G~~D~~vp~~~~~~l~~----~~~~~~l~ 387 (415)
T 3mve_A 313 PKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVP-ILAMSLEGDPVSPYSDNQMVAF----FSTYGKAK 387 (415)
T ss_dssp CHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSC-EEEEEETTCSSSCHHHHHHHHH----TBTTCEEE
T ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccCCCCCC-EEEEEeCCCCCCCHHHHHHHHH----hCCCceEE
Confidence 1110011 112322 2 2233334555555433 3566787 9999999999999988877665 45566777
Q ss_pred EEEecCC-CCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 714 LFKCELG-AGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 714 ~~~~~~~-~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
+++ + .+|. ..-+....+.+||.++|.
T Consensus 388 ~i~---g~~~h~------~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 388 KIS---SKTITQ------GYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp EEC---CCSHHH------HHHHHHHHHHHHHHHHHT
T ss_pred Eec---CCCccc------chHHHHHHHHHHHHHHhc
Confidence 786 4 3331 222234456899998874
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=197.72 Aligned_cols=243 Identities=15% Similarity=0.141 Sum_probs=167.5
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC--CCCChHH-HHHHHcCcEEEEEecCCCCCCchh
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND--PAFNSSR-LSLLDRGFIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~--~~~~~~~-~~l~~~G~~v~~~~~RG~g~~G~~ 562 (758)
.+.+.+++.||.+|.+.++.|++. ++.|+||+.|| ++.... ..|.... ..|+++||+|+.+|+||+|+++..
T Consensus 9 ~~~v~i~~~DG~~L~~~~~~P~~~----~~~P~vv~~~~-~g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G~S~g~ 83 (587)
T 3i2k_A 9 ASNVMVPMRDGVRLAVDLYRPDAD----GPVPVLLVRNP-YDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGE 83 (587)
T ss_dssp EEEEEEECTTSCEEEEEEEEECCS----SCEEEEEEEES-SCTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTSTTCCSC
T ss_pred EEEEEEECCCCCEEEEEEEECCCC----CCeeEEEEECC-cCCCccccccchhhHHHHHHHCCCEEEEEcCCCCCCCCCc
Confidence 467889999999999998888753 57899999876 332211 1133234 889999999999999999988765
Q ss_pred HHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc-cchhhccCC-CC
Q 004368 563 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF-VDVLTTMLD-PT 640 (758)
Q Consensus 563 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~-~d~~~~~~~-~~ 640 (758)
+.. .....+|+.++++||.++.+.+ .+|+++|+||||++++.++.++|+.++|+|+.++. .|+...... ..
T Consensus 84 ~~~------~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~~~~~~gG 156 (587)
T 3i2k_A 84 FVP------HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGG 156 (587)
T ss_dssp CCT------TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTC
T ss_pred ccc------ccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCcccccccceeecCC
Confidence 542 1357899999999999988776 89999999999999999999999999999999998 775432111 00
Q ss_pred CCCC--hhhh-------------------------------------------------------hcc--CCCCCHHHHH
Q 004368 641 IPLT--TAEW-------------------------------------------------------EEW--GDPWKEEFYF 661 (758)
Q Consensus 641 ~~~~--~~~~-------------------------------------------------------~e~--g~p~~~~~~~ 661 (758)
.... ...| .++ ..+.. -.
T Consensus 157 ~~~~~~~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~ 233 (587)
T 3i2k_A 157 ALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDN---DE 233 (587)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTTCCSC---CH
T ss_pred ccccchHHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhcCCCC---Ch
Confidence 1000 0001 001 11111 12
Q ss_pred HHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCC---------C--hH
Q 004368 662 YMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS---------G--RF 730 (758)
Q Consensus 662 ~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~---------~--~~ 730 (758)
+++..|+...++++++| +|+++|.+|..+ ..+.+++++|+..+. ..+++-+ ..|+... . ..
T Consensus 234 yw~~~s~~~~l~~I~vP-vL~v~Gw~D~~~--~~~~~~~~~l~~~~~-~~L~iGP----w~H~~~~~~~g~~~~g~~~~~ 305 (587)
T 3i2k_A 234 SWQSISLFERLGGLATP-ALITAGWYDGFV--GESLRTFVAVKDNAD-ARLVVGP----WSHSNLTGRNADRKFGIAATY 305 (587)
T ss_dssp HHHTTCCHHHHTTCCCC-EEEEEEEECTTH--HHHHHHHHHHTTTSC-EEEEEEE----EETTBCSSEETTEECCGGGSC
T ss_pred HHhcCChhhhhccCCCC-EEEEccCCCccc--hHHHHHHHHHhhcCC-CEEEECC----ccccCccccCCCcccCCcccc
Confidence 35667777788899998 999999999875 468889999987664 2455444 2343210 0 00
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 004368 731 ERLREAAFTYTFLMRALSMLP 751 (758)
Q Consensus 731 ~~~~~~~~~~~fl~~~l~~~~ 751 (758)
...+....+++||.++|+...
T Consensus 306 ~~~~~~~~~~~wFD~~Lkg~~ 326 (587)
T 3i2k_A 306 PIQEATTMHKAFFDRHLRGET 326 (587)
T ss_dssp CHHHHHHHHHHHHHHHHSCCT
T ss_pred ccchhhHHHHHHHHHHhcCCC
Confidence 111112346899999997553
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-17 Score=168.92 Aligned_cols=234 Identities=13% Similarity=0.119 Sum_probs=148.9
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCcc-CCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHh
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 565 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~ 565 (758)
.+..+.+.||.++++.++.|++. ++.|+||++||+... .....|......++.++|.|+.+|+||+++....
T Consensus 4 ~~~~~~~~dg~~l~~~~~~p~~~----~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~~~v~~~d~~~~~~~~~~--- 76 (275)
T 3h04_A 4 IKYKVITKDAFALPYTIIKAKNQ----PTKGVIVYIHGGGLMFGKANDLSPQYIDILTEHYDLIQLSYRLLPEVSLD--- 76 (275)
T ss_dssp EEEEEECTTSCEEEEEEECCSSS----SCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTTEEEEEECCCCTTTSCHH---
T ss_pred eEEEEecCCcEEEEEEEEccCCC----CCCCEEEEEECCcccCCchhhhHHHHHHHHHhCceEEeeccccCCccccc---
Confidence 45667888999999998877642 468999999997632 2223344344444444499999999998865432
Q ss_pred cccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCC---
Q 004368 566 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP--- 642 (758)
Q Consensus 566 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~--- 642 (758)
..++|+.++++++.++ .+.+++.++|+|+||++++.++.+ +.++++|+.+|+.++..........
T Consensus 77 --------~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~~~~~~~~~~~~ 144 (275)
T 3h04_A 77 --------CIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINTEPFKTTNSYYA 144 (275)
T ss_dssp --------HHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCSHHHHSCCHHHH
T ss_pred --------hhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccccccccccchhh
Confidence 3468999999999987 567899999999999999999998 7899999999988752211000000
Q ss_pred -----CChhhhhc------cC-CCC--CHHHHHHHHh-------cC-----------cccccCCCCCCeEEEeccCCCCC
Q 004368 643 -----LTTAEWEE------WG-DPW--KEEFYFYMKS-------YS-----------PVDNVKAQNYPHILVTAGLNDPR 690 (758)
Q Consensus 643 -----~~~~~~~e------~g-~p~--~~~~~~~l~~-------~s-----------p~~~i~~~~~P~~Li~~G~~D~~ 690 (758)
........ .. .+. ....+..... +. ....++++. | +||++|++|..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P-~lii~G~~D~~ 222 (275)
T 3h04_A 145 KIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-P-VFIAHCNGDYD 222 (275)
T ss_dssp HHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-C-EEEEEETTCSS
T ss_pred cccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-C-EEEEecCCCCC
Confidence 00000000 00 000 0000000000 00 011123444 5 99999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHH-HHHHHHHHHHHHHHhcC
Q 004368 691 VMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFE-RLREAAFTYTFLMRALS 748 (758)
Q Consensus 691 V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~-~~~~~~~~~~fl~~~l~ 748 (758)
||+.++.++++++.. .++++++ ++||........ .-+....+.+||.++|.
T Consensus 223 ~~~~~~~~~~~~~~~----~~~~~~~---~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 223 VPVEESEHIMNHVPH----STFERVN---KNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp SCTHHHHHHHTTCSS----EEEEEEC---SSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHhcCC----ceEEEeC---CCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 999999888776543 3466665 899986543221 12223446889998874
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-18 Score=176.76 Aligned_cols=248 Identities=15% Similarity=0.084 Sum_probs=158.1
Q ss_pred eeEEEEeeCC-CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChH---HHHHHHcCcEEEEEecCCCCCCc
Q 004368 485 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSS---RLSLLDRGFIFAIAQIRGGGELG 560 (758)
Q Consensus 485 ~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~---~~~l~~~G~~v~~~~~RG~g~~G 560 (758)
.++.+++.|. .|.+|+++ +|+.. ++.|+|+++||+.+......|... ...+.++|++|+++|.+++..|.
T Consensus 8 ~v~~~~~~S~~~~~~i~v~--~~p~~----~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~~~~ 81 (304)
T 1sfr_A 8 PVEYLQVPSPSMGRDIKVQ--FQSGG----ANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYS 81 (304)
T ss_dssp CCEEEEEEETTTTEEEEEE--EECCS----TTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTC
T ss_pred eEEEEEEECccCCCceEEE--ECCCC----CCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCcccc
Confidence 4566677665 46778776 34432 468999999997432222223221 24566689999999998764442
Q ss_pred hhHHhcccc--cCCcChHhHHH--HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc
Q 004368 561 RQWYENGKF--LKKKNTFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM 636 (758)
Q Consensus 561 ~~~~~~~~~--~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~ 636 (758)
+|...... ..+...+.+++ +++.++.++..+++++++|+|+||||++++.++.++|++|+++|+.+|.+++....
T Consensus 82 -~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~ 160 (304)
T 1sfr_A 82 -DWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAM 160 (304)
T ss_dssp -BCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTT
T ss_pred -ccCCccccccccccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCccccc
Confidence 22111000 00123344443 34445544334678899999999999999999999999999999999987653210
Q ss_pred CC--------CCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCC--CCCeEEEeccCCCC--------------CCC
Q 004368 637 LD--------PTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ--NYPHILVTAGLNDP--------------RVM 692 (758)
Q Consensus 637 ~~--------~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~--~~P~~Li~~G~~D~--------------~V~ 692 (758)
.. ..-... .-..||.+... .+.+.+|..++.++ +.+|++|.||+.|+ +|+
T Consensus 161 ~~~~~~~~~~~~~~~~--~~~~~g~~~~~----~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~~ 234 (304)
T 1sfr_A 161 GPTLIGLAMGDAGGYK--ASDMWGPKEDP----AWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFV 234 (304)
T ss_dssp HHHHHHHHHHHTTSCC--HHHHHCSTTST----HHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHH
T ss_pred hhhhhhHhhhhccccc--hHHhcCCcchh----hhHhcCHHHHHHHhhhcCCeEEEEecCCCCccccccccccchhHHHH
Confidence 00 000000 01235655432 24567887766554 22459999999998 778
Q ss_pred ChHHHHHHHHHHhcC-CCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 004368 693 YSEPAKFVAKLREMK-TDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPS 752 (758)
Q Consensus 693 ~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 752 (758)
+.++++++++|++.| .++++.+++ +++|.. ....++..+.+.||.+.|+.++.
T Consensus 235 ~~~~~~~~~~L~~~G~~~v~~~~~~---~g~H~~----~~w~~~l~~~l~~l~~~l~~~~~ 288 (304)
T 1sfr_A 235 RTSNIKFQDAYNAGGGHNGVFDFPD---SGTHSW----EYWGAQLNAMKPDLQRALGATPN 288 (304)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCS---CCCSSH----HHHHHHHHHTHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhCCCCceEEEecC---CCccCH----HHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999998 876554443 679952 22233445578999999987543
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.9e-18 Score=180.17 Aligned_cols=253 Identities=15% Similarity=0.066 Sum_probs=158.2
Q ss_pred CCceeEEEEeeCCC--C--eEEEEEEEeeccccccCCCCCEEEEecCCCccC-CCCCCC-----hHHHHHH-HcCcEEEE
Q 004368 482 NNYFTERKWASASD--G--TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC-NDPAFN-----SSRLSLL-DRGFIFAI 550 (758)
Q Consensus 482 ~~~~~~~~~~~s~d--G--~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~-~~~~~~-----~~~~~l~-~~G~~v~~ 550 (758)
......++.|.|.| | ..+.++++.|++. .++.|+|++.||..+.. ..+++. .....|+ ++||+|+.
T Consensus 39 ~~~~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~---~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~ 115 (377)
T 4ezi_A 39 YDLQLYKINYKTQSPDGNLTIASGLVAMPIHP---VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVM 115 (377)
T ss_dssp CCEEEEEEEEEEECTTSCEEEEEEEEEEESSC---SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEE
T ss_pred CCcEEEEEEEEEECCCCCEEEEEEEEEECCCC---CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEE
Confidence 34466778887766 4 4577999999763 36789999999975321 112211 2335677 99999999
Q ss_pred EecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHH-cCCCCCCcEEEEEeChhHHHHHHHHhhCC----C-ceeEEE
Q 004368 551 AQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK-NCYCTKEKLCIEGRSAGGLLIGAVLNMRP----D-LFKAAV 624 (758)
Q Consensus 551 ~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~d~~~i~i~G~S~GG~l~~~~~~~~p----~-~f~a~v 624 (758)
+|+||.|+.+...+...........+.|.+.++..+.+ .+..+.++|+++|+|+||+++++++...| + .+++++
T Consensus 116 ~D~rG~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~~ 195 (377)
T 4ezi_A 116 PDYLGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAVA 195 (377)
T ss_dssp ECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEEE
T ss_pred eCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEEE
Confidence 99999998764111000000111234454544444433 46557799999999999999998887654 3 588999
Q ss_pred EcCCccchhhccC----CC--------------------CCCCChhhh---------hc--------------cC-----
Q 004368 625 AAVPFVDVLTTML----DP--------------------TIPLTTAEW---------EE--------------WG----- 652 (758)
Q Consensus 625 ~~~~~~d~~~~~~----~~--------------------~~~~~~~~~---------~e--------------~g----- 652 (758)
+.++..|+...+. .. ..|. ..++ .. +.
T Consensus 196 ~~~~p~dl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (377)
T 4ezi_A 196 PGSAPYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSG-FDEIFAPPYNTLIPELMDGYHAVDEILQALPQDPLL 274 (377)
T ss_dssp EESCCCCHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSC-HHHHBCTTHHHHHHHHTSSCSCHHHHHHHSCSSGGG
T ss_pred ecCcccCHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccC-HHHHhCHHHHHHHHHHhhcccchhhhhhccCCCHHH
Confidence 9998888543210 00 0000 0000 00 00
Q ss_pred -----------CCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCC-
Q 004368 653 -----------DPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG- 720 (758)
Q Consensus 653 -----------~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~- 720 (758)
++.++...+.+.+.+... .+.+.| +||+||.+|..||+.++.++++++++.|. ++++.++ +
T Consensus 275 ~~~~~~~~~~~~~~~p~~~~~l~~~~~~~--~~~~~P-vli~hG~~D~~Vp~~~~~~l~~~l~~~G~-v~~~~~~---~~ 347 (377)
T 4ezi_A 275 IFQPKFSNGIISKTDRNTEILKINFNHYD--FKPTAP-LLLVGTKGDRDVPYAGAEMAYHSFRKYSD-FVWIKSV---SD 347 (377)
T ss_dssp GBCHHHHHHHHTTCSTTHHHHHHHHCCCC--SCCSSC-EEEEECTTCSSSCHHHHHHHHHHHHTTCS-CEEEEES---CS
T ss_pred HhchhhhhhcccccchHHHHHHHHhcccC--CCCCCC-EEEEecCCCCCCCHHHHHHHHHHHHhcCC-EEEEEcC---CC
Confidence 001111112222222221 134676 99999999999999999999999999998 8887776 6
Q ss_pred -CCCCCCCChHHHHHHHHHHHHHHHHhcCCC
Q 004368 721 -AGHFSKSGRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 721 -~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
.+|... . .....+.++||.++++.+
T Consensus 348 ~~~H~~~--~---~~~~~~~~~wl~~~~~~~ 373 (377)
T 4ezi_A 348 ALDHVQA--H---PFVLKEQVDFFKQFERQE 373 (377)
T ss_dssp SCCTTTT--H---HHHHHHHHHHHHHHHTSS
T ss_pred CCCccCh--H---HHHHHHHHHHHHHhhcch
Confidence 788642 2 223445789999998754
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-18 Score=175.23 Aligned_cols=215 Identities=15% Similarity=0.159 Sum_probs=137.9
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
+..+.||++||-.++. ..|...+..|+++||.|+.+|+||+|.+..+...... ..-++|+.+++++|.+.
T Consensus 49 G~~~~VlllHG~~~s~--~~~~~la~~La~~Gy~Via~Dl~GhG~S~~~~~~~~~----~~~~~d~~~~~~~l~~~---- 118 (281)
T 4fbl_A 49 GSRIGVLVSHGFTGSP--QSMRFLAEGFARAGYTVATPRLTGHGTTPAEMAASTA----SDWTADIVAAMRWLEER---- 118 (281)
T ss_dssp CSSEEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEECCCTTSSSCHHHHHTCCH----HHHHHHHHHHHHHHHHH----
T ss_pred CCCceEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEECCCCCCCCCccccCCCH----HHHHHHHHHHHHHHHhC----
Confidence 4456788999944332 3466777899999999999999999987554332111 12257888888888764
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc-----CCCCCCC---------ChhhhhccCCCCCH-H
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-----LDPTIPL---------TTAEWEEWGDPWKE-E 658 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~-----~~~~~~~---------~~~~~~e~g~p~~~-~ 658 (758)
.+++.++|+|+||.+++.++.++|++++++|+.+|..++.... .....+. ......++..+..+ .
T Consensus 119 ~~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (281)
T 4fbl_A 119 CDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVP 198 (281)
T ss_dssp CSEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSEEEGG
T ss_pred CCeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhccCchH
Confidence 3799999999999999999999999999999999876532210 0001100 00000111111100 0
Q ss_pred HHHHHHhc--CcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCC-hHHHHHH
Q 004368 659 FYFYMKSY--SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG-RFERLRE 735 (758)
Q Consensus 659 ~~~~l~~~--sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~ 735 (758)
....+... .....+.++++| +||+||++|..||+.++.++++++.. .+.++++++ ++||....+ ..+.+.+
T Consensus 199 ~~~~~~~~~~~~~~~l~~i~~P-~Lii~G~~D~~v~~~~~~~l~~~l~~--~~~~l~~~~---~~gH~~~~e~~~e~v~~ 272 (281)
T 4fbl_A 199 AIKHLITIGAVAEMLLPRVKCP-ALIIQSREDHVVPPHNGELIYNGIGS--TEKELLWLE---NSYHVATLDNDKELILE 272 (281)
T ss_dssp GHHHHHHHHHHHHHHGGGCCSC-EEEEEESSCSSSCTHHHHHHHHHCCC--SSEEEEEES---SCCSCGGGSTTHHHHHH
T ss_pred HHHHHHHhhhhccccccccCCC-EEEEEeCCCCCcCHHHHHHHHHhCCC--CCcEEEEEC---CCCCcCccccCHHHHHH
Confidence 01111100 111235567888 99999999999999999999888753 334667776 999975432 2232322
Q ss_pred HHHHHHHHHHh
Q 004368 736 AAFTYTFLMRA 746 (758)
Q Consensus 736 ~~~~~~fl~~~ 746 (758)
.+.+||.+|
T Consensus 273 --~i~~FL~~H 281 (281)
T 4fbl_A 273 --RSLAFIRKH 281 (281)
T ss_dssp --HHHHHHHTC
T ss_pred --HHHHHHHhC
Confidence 367899875
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-18 Score=169.36 Aligned_cols=187 Identities=13% Similarity=0.124 Sum_probs=125.5
Q ss_pred CCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHH----HHHHH
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACA----EYLIK 588 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~----~~l~~ 588 (758)
.+..|+||++||. |.. ...|......|...|+.|+.|+.+|.+-|+..+..... .....+++..+.+ +.+.+
T Consensus 19 ~~a~~~Vv~lHG~-G~~-~~~~~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 94 (210)
T 4h0c_A 19 QRAKKAVVMLHGR-GGT-AADIISLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQ--QNQPALDSALALVGEVVAEIEA 94 (210)
T ss_dssp TTCSEEEEEECCT-TCC-HHHHHGGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGG--GGTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCC-CCC-HHHHHHHHHHhCCCCeEEEeecCCCCCccccccCCCcc--cchHHHHHHHHHHHHHHHHHHH
Confidence 3457899999993 322 11233333455557999999999887655544332211 1123344444433 34444
Q ss_pred cCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCc
Q 004368 589 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSP 668 (758)
Q Consensus 589 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp 668 (758)
. .+|++||+++|+|+||++++.++.++|++|+++|+.+|.+-.. .. . . ....+
T Consensus 95 ~-~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~------~~--~------------~------~~~~~ 147 (210)
T 4h0c_A 95 Q-GIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQ------EL--A------------I------GNYKG 147 (210)
T ss_dssp T-TCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSS------SC--C------------G------GGCCB
T ss_pred h-CCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCCh------hh--h------------h------hhhhh
Confidence 4 4799999999999999999999999999999999988753110 00 0 0 00000
Q ss_pred ccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 669 VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 669 ~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
.. .+.| +|++||++|++||+.++++++++|++.|.+++++.|+ +.||.... + +..++.+||.
T Consensus 148 --~~--~~~P-vl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~yp---g~gH~i~~---~---el~~i~~wL~ 209 (210)
T 4h0c_A 148 --DF--KQTP-VFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVVYP---GRPHTISG---D---EIQLVNNTIL 209 (210)
T ss_dssp --CC--TTCE-EEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEEEEE---TCCSSCCH---H---HHHHHHHTTT
T ss_pred --hc--cCCc-eEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEEC---CCCCCcCH---H---HHHHHHHHHc
Confidence 01 1345 9999999999999999999999999999998888887 89997631 2 3334456664
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=169.94 Aligned_cols=241 Identities=13% Similarity=0.089 Sum_probs=158.0
Q ss_pred EeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccc
Q 004368 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 569 (758)
Q Consensus 490 ~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~ 569 (758)
.+.+.||.+|.+.++.|.+ ++.|+||++||..+... .|......|+++||.|+.+|+||.|....... ..
T Consensus 21 ~~~~~~g~~l~~~~~~~~~-----~~~~~vv~~hG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~---~~ 90 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPTG-----TPKALIFVSHGAGEHSG--RYEELARMLMGLDLLVFAHDHVGHGQSEGERM---VV 90 (303)
T ss_dssp EEECTTSCEEEEEEECCSS-----CCSEEEEEECCTTCCGG--GGHHHHHHHHHTTEEEEEECCTTSTTSCSSTT---CC
T ss_pred eEecCCCeEEEEEEeccCC-----CCCeEEEEECCCCchhh--HHHHHHHHHHhCCCcEEEeCCCCCCCCCCCCC---CC
Confidence 5778899999998765543 35799999999654333 46667788888999999999999987653211 01
Q ss_pred cCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc-------------
Q 004368 570 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM------------- 636 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~------------- 636 (758)
..-....+|+.++++++..+. +.+++.++|+|+||.+++.++.++|++++++|+.+|+.+.....
T Consensus 91 ~~~~~~~~d~~~~l~~l~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 168 (303)
T 3pe6_A 91 SDFHVFVRDVLQHVDSMQKDY--PGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLN 168 (303)
T ss_dssp SSTHHHHHHHHHHHHHHHHHS--TTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcc--CCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHHHHHHH
Confidence 111234688888999887763 45799999999999999999999999999999999976532110
Q ss_pred -CCCCCCCChhhhhccCCCCCHHHHHHHHh---------------------cCcccccCCCCCCeEEEeccCCCCCCCCh
Q 004368 637 -LDPTIPLTTAEWEEWGDPWKEEFYFYMKS---------------------YSPVDNVKAQNYPHILVTAGLNDPRVMYS 694 (758)
Q Consensus 637 -~~~~~~~~~~~~~e~g~p~~~~~~~~l~~---------------------~sp~~~i~~~~~P~~Li~~G~~D~~V~~~ 694 (758)
........... ..+-. .+......+.. ......+.++++| +|+++|.+|..|++.
T Consensus 169 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~l~i~g~~D~~~~~~ 245 (303)
T 3pe6_A 169 SVLPNLSSGPID-SSVLS-RNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVP-FLLLQGSADRLCDSK 245 (303)
T ss_dssp TTCCSCCCCCCC-GGGTC-SCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGGCCSC-EEEEEETTCSSBCHH
T ss_pred HhcccccCCccc-hhhhh-cchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhcCCCC-EEEEeeCCCCCCChH
Confidence 00000000000 00000 01111111110 0111345566788 999999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHH-HHHHHHHHHHHHHHhcCCC
Q 004368 695 EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFE-RLREAAFTYTFLMRALSML 750 (758)
Q Consensus 695 ~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~-~~~~~~~~~~fl~~~l~~~ 750 (758)
++.++++.+... ..++++++ ++||.......+ ..+.....++||.+++...
T Consensus 246 ~~~~~~~~~~~~--~~~~~~~~---~~gH~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 297 (303)
T 3pe6_A 246 GAYLLMELAKSQ--DKTLKIYE---GAYHVLHKELPEVTNSVFHEINMWVSQRTATA 297 (303)
T ss_dssp HHHHHHHHCCCS--SEEEEEET---TCCSCGGGSCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHhcccC--CceEEEeC---CCccceeccchHHHHHHHHHHHHHHhccCCCC
Confidence 998888877532 34566665 899987654433 2333445789999987643
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=167.94 Aligned_cols=220 Identities=17% Similarity=0.214 Sum_probs=142.4
Q ss_pred eEEEEe-eCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHH
Q 004368 486 TERKWA-SASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 564 (758)
Q Consensus 486 ~~~~~~-~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~ 564 (758)
.+.+.+ .+.||.++......+.+ .+.|+||++||..+....+.+......+.++||.|+.+|+||.|.......
T Consensus 11 ~~~~~~~~~~~g~~l~~~~~~~~~-----~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~ 85 (270)
T 3llc_A 11 THAITVGQGSDARSIAALVRAPAQ-----DERPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGASGGAFR 85 (270)
T ss_dssp EEEEEESSGGGCEEEEEEEECCSS-----TTSCEEEEECCTTCCTTSHHHHHHHHHHHHHTCEEEEECCTTSTTCCSCGG
T ss_pred cceEEEeeccCcceEEEEeccCCC-----CCCCeEEEECCCccccccchHHHHHHHHHhCCCcEEEeccccCCCCCCccc
Confidence 344444 66799888765433221 237999999996554333223334456668899999999999998754322
Q ss_pred hcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhh---CC---CceeEEEEcCCccchhhccCC
Q 004368 565 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM---RP---DLFKAAVAAVPFVDVLTTMLD 638 (758)
Q Consensus 565 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~---~p---~~f~a~v~~~~~~d~~~~~~~ 638 (758)
.. .-....+|+.++++++ ..+++.++|+|+||.+++.++.+ +| +.++++|+.+|..++......
T Consensus 86 ~~----~~~~~~~d~~~~~~~l------~~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~~~~~ 155 (270)
T 3llc_A 86 DG----TISRWLEEALAVLDHF------KPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIE 155 (270)
T ss_dssp GC----CHHHHHHHHHHHHHHH------CCSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHHHTTG
T ss_pred cc----cHHHHHHHHHHHHHHh------ccCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchhhhhh
Confidence 10 0011134444455544 25899999999999999999999 99 999999999998876543211
Q ss_pred CCCCCC-hhhh---------hccC-CC--CCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHh
Q 004368 639 PTIPLT-TAEW---------EEWG-DP--WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLRE 705 (758)
Q Consensus 639 ~~~~~~-~~~~---------~e~g-~p--~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~ 705 (758)
...... ...+ ..+. .+ .....+...........+.++++| +|+++|.+|..|++.++.++++.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~v~~~~~~~~~~~~~~ 234 (270)
T 3llc_A 156 PLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCP-VHILQGMADPDVPYQHALKLVEHLPA 234 (270)
T ss_dssp GGCCHHHHHHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSC-EEEEEETTCSSSCHHHHHHHHHTSCS
T ss_pred hhhhhhhhhhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCC-EEEEecCCCCCCCHHHHHHHHHhcCC
Confidence 111000 0000 0111 11 123344445555666777788888 99999999999999999888887754
Q ss_pred cCCCCceEEEEecCCCCCCCC
Q 004368 706 MKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 706 ~~~~~~~~~~~~~~~~gH~~~ 726 (758)
.+.++++++ ++||...
T Consensus 235 --~~~~~~~~~---~~gH~~~ 250 (270)
T 3llc_A 235 --DDVVLTLVR---DGDHRLS 250 (270)
T ss_dssp --SSEEEEEET---TCCSSCC
T ss_pred --CCeeEEEeC---CCccccc
Confidence 235566665 8999643
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-17 Score=171.87 Aligned_cols=212 Identities=14% Similarity=0.114 Sum_probs=139.6
Q ss_pred EEEEee---CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCC-ChHHHHHHHcCcEEEEEecCCCCCCchh
Q 004368 487 ERKWAS---ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF-NSSRLSLLDRGFIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 487 ~~~~~~---s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~-~~~~~~l~~~G~~v~~~~~RG~g~~G~~ 562 (758)
..+.+. +.+|.++.++++.|++. +.+.|+||++||+.+... .| ......+.++||+|+.+|+|+.+..+..
T Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~P~~~---~~~~p~vv~lHG~~~~~~--~~~~~~~~~l~~~g~~v~~~d~~~~~~p~~~ 99 (304)
T 3d0k_A 25 NAIPYLDDDRNADRPFTLNTYRPYGY---TPDRPVVVVQHGVLRNGA--DYRDFWIPAADRHKLLIVAPTFSDEIWPGVE 99 (304)
T ss_dssp EEEEECC---CTTCCEEEEEEECTTC---CTTSCEEEEECCTTCCHH--HHHHHTHHHHHHHTCEEEEEECCTTTSCHHH
T ss_pred ceEEecccCCCCCceEEEEEEeCCCC---CCCCcEEEEeCCCCCCHH--HHHHHHHHHHHHCCcEEEEeCCccccCCCcc
Confidence 345565 67888999998888764 246799999999765432 23 3334567788999999999976332222
Q ss_pred HHhccc--c------cCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCC-ceeEEEEcC-Cccch
Q 004368 563 WYENGK--F------LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAV-PFVDV 632 (758)
Q Consensus 563 ~~~~~~--~------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~-~~~d~ 632 (758)
|+..+. + ......++|+.+++++|.++..+|+++|+|+|+|+||++++.++.++|+ .++++|+.. |+.++
T Consensus 100 ~~~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~~~~~~~ 179 (304)
T 3d0k_A 100 SYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTL 179 (304)
T ss_dssp HTTTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEESCSSCCC
T ss_pred ccccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEecCccccc
Confidence 332221 0 1113456889999999999877899999999999999999999999995 778777544 76554
Q ss_pred hhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCC-----------------ChH
Q 004368 633 LTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVM-----------------YSE 695 (758)
Q Consensus 633 ~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~-----------------~~~ 695 (758)
.... .. + .+|.... ..+|.........| +|++||++|..+. ...
T Consensus 180 ~~~~----~~-----~-~~~~~~~--------~~~~~~~~~~~~~p-~li~~G~~D~~~~~p~~~~~~~~~~~~~~~~~~ 240 (304)
T 3d0k_A 180 PTFE----HR-----F-PEGLDGV--------GLTEDHLARLLAYP-MTILAGDQDIATDDPNLPSEPAALRQGPHRYAR 240 (304)
T ss_dssp SSTT----SB-----T-TTSSBTT--------TCCHHHHHHHHHSC-CEEEEETTCCCC--CCSCCSHHHHTTCSSHHHH
T ss_pred CCcc----cc-----C-ccccCCC--------CCCHHHHHhhhcCC-EEEEEeCCCCCccccccccChhhhccCccHHHH
Confidence 3211 00 0 1111100 01222212222456 9999999999752 245
Q ss_pred HHHHHHHHH----hcCCC--CceEEEEecCCCCCCC
Q 004368 696 PAKFVAKLR----EMKTD--DNILLFKCELGAGHFS 725 (758)
Q Consensus 696 ~~~~~~~L~----~~~~~--~~~~~~~~~~~~gH~~ 725 (758)
+.++++.++ +.+.+ +++++++ +.||..
T Consensus 241 ~~~~~~~l~~~a~~~g~~~~~~~~~~p---g~gH~~ 273 (304)
T 3d0k_A 241 ARHYYEAGQRAAAQRGLPFGWQLQVVP---GIGHDG 273 (304)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCEEEEET---TCCSCH
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEEeC---CCCCch
Confidence 667778776 66766 7777776 999964
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=172.94 Aligned_cols=193 Identities=18% Similarity=0.151 Sum_probs=135.3
Q ss_pred ccCCCCCEEEEecCCCccCCCCCCChHHHHHHHc--CcEEEEEecC---CCCCCchhHHhccccc--CC-------cChH
Q 004368 511 KLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR--GFIFAIAQIR---GGGELGRQWYENGKFL--KK-------KNTF 576 (758)
Q Consensus 511 ~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~~~R---G~g~~G~~~~~~~~~~--~~-------~~~~ 576 (758)
.++++.|+||++||. |.. ...|......|..+ ++.++.++.+ ...+.|..|+...... .. ....
T Consensus 61 ~~~~~~plVI~LHG~-G~~-~~~~~~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~~~~~~~~~~~~~~~~~ 138 (285)
T 4fhz_A 61 APGEATSLVVFLHGY-GAD-GADLLGLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWLDGSSETAAAEGMAAAA 138 (285)
T ss_dssp CTTCCSEEEEEECCT-TBC-HHHHHTTHHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCC-CCC-HHHHHHHHHHHHHhCCCeEEEecCCCcccccCCCcccccccccccCcccchhhHHHHHHH
Confidence 346788999999993 322 11233334556554 8889988753 2234566775321110 00 1224
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCC
Q 004368 577 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWK 656 (758)
Q Consensus 577 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~ 656 (758)
.++.+.++.++++..+|++||+++|+|+||++++.++.++|+.|+++|+.++.+..
T Consensus 139 ~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~------------------------ 194 (285)
T 4fhz_A 139 RDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLA------------------------ 194 (285)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSC------------------------
T ss_pred HHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccC------------------------
Confidence 56666777777777789999999999999999999999999999999988874211
Q ss_pred HHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHH
Q 004368 657 EEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREA 736 (758)
Q Consensus 657 ~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~ 736 (758)
++.. .. ..+.+.| +|++||++|++||+.++++++++|+++|.++++++|+ +.||... . ++.
T Consensus 195 ~~~~---~~------~~~~~~P-vl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~~~~~~y~---g~gH~i~---~---~~l 255 (285)
T 4fhz_A 195 PERL---AE------EARSKPP-VLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHVMK---GTGHGIA---P---DGL 255 (285)
T ss_dssp HHHH---HH------HCCCCCC-EEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEET---TCCSSCC---H---HHH
T ss_pred chhh---hh------hhhhcCc-ccceeeCCCCCcCHHHHHHHHHHHHHCCCCEEEEEEC---CCCCCCC---H---HHH
Confidence 1110 10 0112455 9999999999999999999999999999988877776 8999753 2 234
Q ss_pred HHHHHHHHHhcC
Q 004368 737 AFTYTFLMRALS 748 (758)
Q Consensus 737 ~~~~~fl~~~l~ 748 (758)
.++.+||.++|-
T Consensus 256 ~~~~~fL~~~Lp 267 (285)
T 4fhz_A 256 SVALAFLKERLP 267 (285)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHCc
Confidence 456899999983
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=166.10 Aligned_cols=224 Identities=13% Similarity=0.129 Sum_probs=145.6
Q ss_pred ceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhH
Q 004368 484 YFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 563 (758)
Q Consensus 484 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~ 563 (758)
+..+.+.+++ +|..+.+.++..... +++.|+||++||..+... .|......|+++||.|+.+|+||.|.....
T Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~p~vv~~hG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~- 90 (315)
T 4f0j_A 18 YPVHYLDFTS-QGQPLSMAYLDVAPK---KANGRTILLMHGKNFCAG--TWERTIDVLADAGYRVIAVDQVGFCKSSKP- 90 (315)
T ss_dssp SCCEEEEEEE-TTEEEEEEEEEECCS---SCCSCEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTSTTSCCC-
T ss_pred ccceeEEEec-CCCCeeEEEeecCCC---CCCCCeEEEEcCCCCcch--HHHHHHHHHHHCCCeEEEeecCCCCCCCCC-
Confidence 3456677764 666777776555432 356799999999655433 466777889999999999999999876431
Q ss_pred HhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCC-
Q 004368 564 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP- 642 (758)
Q Consensus 564 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~- 642 (758)
.....+++|+.+.+..+++. .+.+++.++|+|+||++++.++.++|++++++|+.+|..............
T Consensus 91 ------~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 162 (315)
T 4f0j_A 91 ------AHYQYSFQQLAANTHALLER--LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKALGVPWRS 162 (315)
T ss_dssp ------SSCCCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCSSCHHHHTCCCCC
T ss_pred ------CccccCHHHHHHHHHHHHHH--hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcccCCcccccchhhh
Confidence 11245678888888777765 345799999999999999999999999999999998853210000000000
Q ss_pred ----------CChhhhh-----cc-CCC---CCHH-----------------------HHHHHHhcCcccccCCCCCCeE
Q 004368 643 ----------LTTAEWE-----EW-GDP---WKEE-----------------------FYFYMKSYSPVDNVKAQNYPHI 680 (758)
Q Consensus 643 ----------~~~~~~~-----e~-g~p---~~~~-----------------------~~~~l~~~sp~~~i~~~~~P~~ 680 (758)
....... .+ ... .... .+..+...+....+.++++| +
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P-~ 241 (315)
T 4f0j_A 163 VDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDRLQMP-T 241 (315)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCCCGGGGGGCCSC-E
T ss_pred hHHHHhhcccCChHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccchhhhhcccCCCC-e
Confidence 0000000 00 000 0000 11122233445567777888 9
Q ss_pred EEeccCCCCCCCChHH------------HHHHHHHHhcCCCCceEEEEecCCCCCCCC
Q 004368 681 LVTAGLNDPRVMYSEP------------AKFVAKLREMKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 681 Li~~G~~D~~V~~~~~------------~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 726 (758)
|+++|++|..||..+. .+..+++.+.....++++++ ++||...
T Consensus 242 lii~G~~D~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~gH~~~ 296 (315)
T 4f0j_A 242 LLLIGEKDNTAIGKDAAPAELKARLGNYAQLGKDAARRIPQATLVEFP---DLGHTPQ 296 (315)
T ss_dssp EEEEETTCCCCTTGGGSCHHHHTTSCCHHHHHHHHHHHSTTEEEEEET---TCCSCHH
T ss_pred EEEEecCCCcCccccccccccccccccchhhhhHHHhhcCCceEEEeC---CCCcchh
Confidence 9999999999996554 55666666655566667775 8999753
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-17 Score=161.33 Aligned_cols=184 Identities=13% Similarity=-0.002 Sum_probs=127.0
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhc--------ccc--cCCcChHhHHHHHH
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN--------GKF--LKKKNTFTDFIACA 583 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~--------~~~--~~~~~~~~D~~~~~ 583 (758)
++.| ||++||..+.. ..|......|. .|+.|+.+|.++....+..|+.. +.. ..-....+++.+.+
T Consensus 15 ~~~p-vv~lHG~g~~~--~~~~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (209)
T 3og9_A 15 DLAP-LLLLHSTGGDE--HQLVEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTDEV 90 (209)
T ss_dssp TSCC-EEEECCTTCCT--TTTHHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHHHHHHHHHHHH
T ss_pred CCCC-EEEEeCCCCCH--HHHHHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHHHHHHHHHHHH
Confidence 4678 99999954432 33555555555 89999999965433323444430 000 01113345666677
Q ss_pred HHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHH
Q 004368 584 EYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYM 663 (758)
Q Consensus 584 ~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l 663 (758)
+.+.++..+|+++++++|+|+||++++.++.++|++++++|+.+|+......
T Consensus 91 ~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~---------------------------- 142 (209)
T 3og9_A 91 SLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDFE---------------------------- 142 (209)
T ss_dssp HHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCCC----------------------------
T ss_pred HHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCccc----------------------------
Confidence 7776766679999999999999999999999999999999999886431100
Q ss_pred HhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHH
Q 004368 664 KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 743 (758)
Q Consensus 664 ~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 743 (758)
........| +|++||++|+.||+.++++++++|++.+.++++.++ +.||... .+ ...++.+||
T Consensus 143 ------~~~~~~~~p-~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~----~~gH~~~---~~---~~~~~~~~l 205 (209)
T 3og9_A 143 ------QTVQLDDKH-VFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYES----SLGHQLT---QE---EVLAAKKWL 205 (209)
T ss_dssp ------CCCCCTTCE-EEEEECTTCSSSCHHHHHHHHHHHHHTTCEEEEEEC----SSTTSCC---HH---HHHHHHHHH
T ss_pred ------ccccccCCC-EEEEcCCCCCccCHHHHHHHHHHHHHcCCceEEEEc----CCCCcCC---HH---HHHHHHHHH
Confidence 001123455 999999999999999999999999999877655554 3799763 12 233456888
Q ss_pred HHh
Q 004368 744 MRA 746 (758)
Q Consensus 744 ~~~ 746 (758)
.++
T Consensus 206 ~~~ 208 (209)
T 3og9_A 206 TET 208 (209)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-17 Score=167.55 Aligned_cols=237 Identities=14% Similarity=0.121 Sum_probs=151.2
Q ss_pred eeEEEEeeCC-CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCCh---HHHHHHHcCcEEEEEecCCCCCCc
Q 004368 485 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---SRLSLLDRGFIFAIAQIRGGGELG 560 (758)
Q Consensus 485 ~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~~~RG~g~~G 560 (758)
..+.+++.|. +|.+++++ +.|++ .|+||++||+........|.. ..+.+.++|++|+.+|.++++.|.
T Consensus 10 ~~~~~~~~S~~~~~~~~~~-~~P~~-------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~~~~~ 81 (280)
T 1r88_A 10 PYENLMVPSPSMGRDIPVA-FLAGG-------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYT 81 (280)
T ss_dssp CCEEEEEEETTTTEEEEEE-EECCS-------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTSTTS
T ss_pred CEEEEEEECcccCCcceEE-EeCCC-------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCCCccC
Confidence 4567777765 68899998 66643 289999999743222222221 235566789999999997654431
Q ss_pred hhHHhcccccCCcChHhHHH--HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCC
Q 004368 561 RQWYENGKFLKKKNTFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD 638 (758)
Q Consensus 561 ~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~ 638 (758)
+|.... . ..+.+++ +++.++.++..+++++++|+|+||||++++.++.++|++|+++++.+|.+++......
T Consensus 82 -~~~~~~---~--~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~ 155 (280)
T 1r88_A 82 -NWEQDG---S--KQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTN 155 (280)
T ss_dssp -BCSSCT---T--CBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHH
T ss_pred -CCCCCC---C--CcHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCCccch
Confidence 121110 0 1233322 2444555534468899999999999999999999999999999999998775321100
Q ss_pred CC--------CCCChhhhhccCCCCCHHHHHHHHhcCcccccCCC--CCCeEEEec----cCCCCC-------CCChHHH
Q 004368 639 PT--------IPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ--NYPHILVTA----GLNDPR-------VMYSEPA 697 (758)
Q Consensus 639 ~~--------~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~--~~P~~Li~~----G~~D~~-------V~~~~~~ 697 (758)
.. ..+. ....||.+... .+.+.+|+.++++. +.++++|.| |+.|++ |++.+++
T Consensus 156 ~~~~~~~~~~~~~~--~~~~~g~~~~~----~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~ 229 (280)
T 1r88_A 156 GAIAAGMQQFGGVD--TNGMWGAPQLG----RWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSR 229 (280)
T ss_dssp HHHHHHHHHHHCCC--THHHHCCGGGS----TTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHH
T ss_pred hhHHHHhhhccccc--hhhhcCCCchh----hhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHHHHHHH
Confidence 00 0000 01234554321 23567887766554 334599999 999985 6899999
Q ss_pred HHHHHHHhcC-CCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 698 KFVAKLREMK-TDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 698 ~~~~~L~~~~-~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
+++++|++.| .++++..+ ++++|.. ...-....+.+.||.+.|.
T Consensus 230 ~~~~~L~~~g~~~~~~~~~---~~g~H~~----~~w~~~l~~~l~~~~~~~~ 274 (280)
T 1r88_A 230 MFYNQYRSVGGHNGHFDFP---ASGDNGW----GSWAPQLGAMSGDIVGAIR 274 (280)
T ss_dssp HHHHHHHHTTCCSEEEECC---SSCCSSH----HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCcceEEEec---CCCCcCh----hHHHHHHHHHHHHHHHHHh
Confidence 9999999998 77654444 3779953 2222234456777777654
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.6e-18 Score=173.48 Aligned_cols=193 Identities=12% Similarity=0.079 Sum_probs=132.6
Q ss_pred CCCCCEEEEecCCCccC---CCCCCChHHHHH----HHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHH
Q 004368 513 DGSDPLLLYGYGSYEIC---NDPAFNSSRLSL----LDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEY 585 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~---~~~~~~~~~~~l----~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~ 585 (758)
.++.|+||++|||.... ....|...+..| +++||.|+.+|+|++++... ...++|+.+++++
T Consensus 38 ~~~~p~vv~lHGgg~~~g~~~~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~~~-----------~~~~~d~~~~~~~ 106 (273)
T 1vkh_A 38 QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEITN-----------PRNLYDAVSNITR 106 (273)
T ss_dssp TTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSCT-----------THHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCcccCCcCChHHHHHHHHHHhhhhccCCcEEEEeecccCCCCCC-----------CcHHHHHHHHHHH
Confidence 35689999999975332 233455555666 47899999999998765321 2456899999999
Q ss_pred HHHcCCCCCCcEEEEEeChhHHHHHHHHhhC-----------------CCceeEEEEcCCccchhhccCCCCCCCChhhh
Q 004368 586 LIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-----------------PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW 648 (758)
Q Consensus 586 l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-----------------p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 648 (758)
+.++ .+.++++++|+|+||++++.++.++ |+.++++|+.+|+.++....... +......
T Consensus 107 l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~--~~~~~~~ 182 (273)
T 1vkh_A 107 LVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEY--PEYDCFT 182 (273)
T ss_dssp HHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHC--GGGHHHH
T ss_pred HHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhc--ccHHHHH
Confidence 9887 5779999999999999999999885 78899999999988765432110 0000000
Q ss_pred -hccCCCCCHHHHH-HHHhcCccc--ccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCC
Q 004368 649 -EEWGDPWKEEFYF-YMKSYSPVD--NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHF 724 (758)
Q Consensus 649 -~e~g~p~~~~~~~-~l~~~sp~~--~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~ 724 (758)
..++.. .+.+. .....+|+. ...++..| +||+||++|..||+.++.+++++|+..+.+.++++++ ++||.
T Consensus 183 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~---~~gH~ 256 (273)
T 1vkh_A 183 RLAFPDG--IQMYEEEPSRVMPYVKKALSRFSID-MHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDD---LGLHN 256 (273)
T ss_dssp HHHCTTC--GGGCCCCHHHHHHHHHHHHHHHTCE-EEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEEC---CCSGG
T ss_pred HHHhccc--ccchhhcccccChhhhhcccccCCC-EEEEecCCcCCCChHHHHHHHHHHHhcCCceEEEEeC---CCccc
Confidence 011110 00000 001112211 11113455 9999999999999999999999999998888888886 89997
Q ss_pred CC
Q 004368 725 SK 726 (758)
Q Consensus 725 ~~ 726 (758)
..
T Consensus 257 ~~ 258 (273)
T 1vkh_A 257 DV 258 (273)
T ss_dssp GG
T ss_pred cc
Confidence 54
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=160.05 Aligned_cols=219 Identities=16% Similarity=0.050 Sum_probs=150.6
Q ss_pred eCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcc----
Q 004368 492 SASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG---- 567 (758)
Q Consensus 492 ~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~---- 567 (758)
...+|. ++.++.|.+ +.|+||++||..+... .|......|+++||.|+.+|+||.|.....+....
T Consensus 8 ~~~~g~--~~~~~~~~~------~~~~vv~~hG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~~~ 77 (238)
T 1ufo_A 8 LTLAGL--SVLARIPEA------PKALLLALHGLQGSKE--HILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRY 77 (238)
T ss_dssp EEETTE--EEEEEEESS------CCEEEEEECCTTCCHH--HHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTH
T ss_pred cccCCE--EEEEEecCC------CccEEEEECCCcccch--HHHHHHHHHHhCCCEEEEecCCCCccCCCCCCcccccch
Confidence 344664 444444432 5799999999654332 23334456778899999999999887543221100
Q ss_pred ---cccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCC
Q 004368 568 ---KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLT 644 (758)
Q Consensus 568 ---~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~ 644 (758)
....-....+|+.++++++.+.+. ++++++|+|+||.+++.++.++|+.++++++.++.... ... . .
T Consensus 78 ~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~-~~~-~-~---- 147 (238)
T 1ufo_A 78 VEEVYRVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPM-KLP-Q-G---- 147 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCC-CCC-T-T----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccc-hhh-h-h----
Confidence 000011346788889999887664 89999999999999999999999999998887764321 100 0 0
Q ss_pred hhhhhccCCCCCHHHHHHHHhcCcccccCCC-CCCeEEEeccCCCCCCCChHHHHHHHHHH-hcCC-CCceEEEEecCCC
Q 004368 645 TAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMYSEPAKFVAKLR-EMKT-DDNILLFKCELGA 721 (758)
Q Consensus 645 ~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~-~~P~~Li~~G~~D~~V~~~~~~~~~~~L~-~~~~-~~~~~~~~~~~~~ 721 (758)
.+..| +....+..+++...+.++ +.| +|+++|++|..||+.++.++++++. ..+. +.++++++ ++
T Consensus 148 -----~~~~~---~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 215 (238)
T 1ufo_A 148 -----QVVED---PGVLALYQAPPATRGEAYGGVP-LLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEE---GA 215 (238)
T ss_dssp -----CCCCC---HHHHHHHHSCGGGCGGGGTTCC-EEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEET---TC
T ss_pred -----hccCC---cccchhhcCChhhhhhhccCCc-EEEEECCCCCccCcHHHHHHHHHHhhcCCCCceEEEEeC---CC
Confidence 01112 124456677888888887 777 9999999999999999999999998 7776 66666775 89
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 722 GHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 722 gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
||.... + ....+.+||.++|+
T Consensus 216 ~H~~~~---~---~~~~~~~~l~~~l~ 236 (238)
T 1ufo_A 216 GHTLTP---L---MARVGLAFLEHWLE 236 (238)
T ss_dssp CSSCCH---H---HHHHHHHHHHHHHH
T ss_pred CcccHH---H---HHHHHHHHHHHHHh
Confidence 997642 2 22335688888764
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=163.01 Aligned_cols=202 Identities=13% Similarity=0.116 Sum_probs=135.5
Q ss_pred EEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCc------hhHHh-ccc---ccCC
Q 004368 503 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG------RQWYE-NGK---FLKK 572 (758)
Q Consensus 503 l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G------~~~~~-~~~---~~~~ 572 (758)
++.|+.. ++.|+||++||..+... .|......|.++||.|+.+|.+|.+... ..|++ .|. ....
T Consensus 14 ~~~p~~~----~~~~~vv~lHG~~~~~~--~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~~~~~~~~ 87 (232)
T 1fj2_A 14 AIVPAAR----KATAAVIFLHGLGDTGH--GWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQED 87 (232)
T ss_dssp EEECCSS----CCSEEEEEECCSSSCHH--HHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBC
T ss_pred cccCCCC----CCCceEEEEecCCCccc--hHHHHHHHHhcCCcEEEecCCCccccccccccccccccccccCCcccccc
Confidence 4556543 56799999999655322 2444445556679999998554411000 00100 000 0001
Q ss_pred ----cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhh
Q 004368 573 ----KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW 648 (758)
Q Consensus 573 ----~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 648 (758)
....+|+.++++++.+ ..+|+++++++|+|+||.+++.++.++|++++++|+.+|+.+.....
T Consensus 88 ~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~------------ 154 (232)
T 1fj2_A 88 ESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASF------------ 154 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGS------------
T ss_pred cHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCccc------------
Confidence 1234566666777766 45688999999999999999999999999999999999976643221
Q ss_pred hccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCC--CceEEEEecCCCCCCCC
Q 004368 649 EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD--DNILLFKCELGAGHFSK 726 (758)
Q Consensus 649 ~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~gH~~~ 726 (758)
+ .....+.+.+.| +|++||++|..|++.++.++++++++.+.+ .++++++ ++||...
T Consensus 155 -----~------------~~~~~~~~~~~P-~l~i~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~H~~~ 213 (232)
T 1fj2_A 155 -----P------------QGPIGGANRDIS-ILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYE---GMMHSSC 213 (232)
T ss_dssp -----C------------SSCCCSTTTTCC-EEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEET---TCCSSCC
T ss_pred -----c------------ccccccccCCCC-EEEEecCCCccCCHHHHHHHHHHHHHhCCCCceEEEEeC---CCCcccC
Confidence 0 001123445677 999999999999999999999999988754 6666665 8999862
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCC
Q 004368 727 SGRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 727 ~~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
.+.+ ..+.+||.++|...
T Consensus 214 ---~~~~---~~i~~~l~~~l~~~ 231 (232)
T 1fj2_A 214 ---QQEM---MDVKQFIDKLLPPI 231 (232)
T ss_dssp ---HHHH---HHHHHHHHHHSCCC
T ss_pred ---HHHH---HHHHHHHHHhcCCC
Confidence 2222 34689999988643
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.6e-17 Score=171.18 Aligned_cols=221 Identities=11% Similarity=0.057 Sum_probs=144.1
Q ss_pred EEEEEEeeccccccCCCCCEEEEecCCCccC-CCCCCChHHHHHHH-cCcEEEEEecCCCCCCchhHHhcccccCCcChH
Q 004368 499 IPICIVYRKNLVKLDGSDPLLLYGYGSYEIC-NDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF 576 (758)
Q Consensus 499 i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~ 576 (758)
++++++.|.+ ++.|+||++|||.... ....|......|+. .||.|+.+|+||+++.... ..+
T Consensus 84 ~~~~~~~p~~-----~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~~~-----------~~~ 147 (326)
T 3d7r_A 84 MQVFRFNFRH-----QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFHID-----------DTF 147 (326)
T ss_dssp EEEEEEESTT-----CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSCHH-----------HHH
T ss_pred EEEEEEeeCC-----CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCCch-----------HHH
Confidence 5566566543 3569999999975332 22234444556664 5999999999998764321 346
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCc----eeEEEEcCCccchhhccCCCCCCCChhhhhccC
Q 004368 577 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL----FKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWG 652 (758)
Q Consensus 577 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g 652 (758)
+|+.+++++|.++ +++++++|+|+|+||.+++.++.++|+. ++++|+.+|++|+.... ... . ..+....
T Consensus 148 ~d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~--~~~--~-~~~~~~~ 220 (326)
T 3d7r_A 148 QAIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSN--KDI--S-DALIEQD 220 (326)
T ss_dssp HHHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCC--TTC--C-HHHHHHC
T ss_pred HHHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCC--hhH--H-hhhcccC
Confidence 8999999999887 6889999999999999999999887776 99999999998754211 010 0 0000000
Q ss_pred CCCCHHHHH----HH--------HhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCC
Q 004368 653 DPWKEEFYF----YM--------KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 720 (758)
Q Consensus 653 ~p~~~~~~~----~l--------~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 720 (758)
......... .+ ...+|+...-+ ..||+||++|++|. +..++.+++++|++.+.++++++++ +
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~lii~G~~D~--~~~~~~~~~~~l~~~~~~~~~~~~~---g 294 (326)
T 3d7r_A 221 AVLSQFGVNEIMKKWANGLPLTDKRISPINGTIE-GLPPVYMFGGGREM--THPDMKLFEQMMLQHHQYIEFYDYP---K 294 (326)
T ss_dssp SSCCHHHHHHHHHHHHTTSCTTSTTTSGGGSCCT-TCCCEEEEEETTST--THHHHHHHHHHHHHTTCCEEEEEET---T
T ss_pred cccCHHHHHHHHHHhcCCCCCCCCeECcccCCcc-cCCCEEEEEeCccc--chHHHHHHHHHHHHCCCcEEEEEeC---C
Confidence 000000000 00 01244432111 34569999999996 4457889999999998888888876 8
Q ss_pred CCCCCCCC-hHHHHHHHHHHHHHHHHhcC
Q 004368 721 AGHFSKSG-RFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 721 ~gH~~~~~-~~~~~~~~~~~~~fl~~~l~ 748 (758)
+||..... .....+....+.+||.+++.
T Consensus 295 ~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 295 MVHDFPIYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp CCTTGGGSSSHHHHHHHHHHHHHHTSCCC
T ss_pred CcccccccCCHHHHHHHHHHHHHHHHHhh
Confidence 99976431 12222334456789887764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-14 Score=153.79 Aligned_cols=235 Identities=13% Similarity=0.146 Sum_probs=154.0
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCC-------------
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEI------------- 257 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~------------- 257 (758)
+..+.|||||++|||.....+.+..+||++|+++|+..... ... ...++||||| .|+|.+.+..
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~ 139 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA 139 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence 45789999999999998876555789999999999877652 233 6679999999 8999875410
Q ss_pred ---------CCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCC------c-ceEEEEEeCCCCCc
Q 004368 258 ---------LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK------I-TRFVFYLDVSKPEE 321 (758)
Q Consensus 258 ---------~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~------~-~~~l~~~d~~~~~~ 321 (758)
....+||++++.++. ....+... ....+.||||| +++.+... . ..+||++| +++
T Consensus 140 ~~~g~~~~~~~~~~l~~~d~~~~~--~~~~l~~~---~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~- 209 (347)
T 2gop_A 140 WFDDLGFFDGEKTTFWIFDTESEE--VIEEFEKP---RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK- 209 (347)
T ss_dssp C---------CEEEEEEEETTTTE--EEEEEEEE---TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE-
T ss_pred eecCcccccCccceEEEEECCCCe--EEeeecCC---CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc-
Confidence 113578999997762 31222222 23467899999 55554332 2 56899999 554
Q ss_pred eEEeeccccceeeEEeecCCEEEEEEcCCC---CCCcEEEEEeCCCCCcceeeecCCCCceeee-EEEeCCEEEEEEEeC
Q 004368 322 LRVLTPRVVGVDTAASHRGNHFFITRRSDE---LFNSELLACPVDNTSETTVLIPHRESVKLQD-IQLFIDHLAVYEREG 397 (758)
Q Consensus 322 ~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~---~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~ 397 (758)
.+.++.. .. ...++|||++|++.++... ..+.+|+.++ + +....++.. .+..+.. +.+. +.+++....+
T Consensus 210 ~~~l~~~-~~-~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~-~~~~~~~~~~~s-dg~~~~~~~~ 282 (347)
T 2gop_A 210 EEKMFEK-VS-FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDE-VDRGVGQAKIKD-GKVYFTLFEE 282 (347)
T ss_dssp EEEEEEE-ES-EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTT-CCSEEEEEEEET-TEEEEEEEET
T ss_pred eEEeccC-cc-eeeECCCCCEEEEEEccccCCccccceEEEEC--C-CceEecccc-CCcccCCccEEc-CcEEEEEecC
Confidence 6666654 22 2335999999999987541 1357899998 3 233334443 2334554 6666 6687788888
Q ss_pred CeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEE
Q 004368 398 GLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYD 461 (758)
Q Consensus 398 g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d 461 (758)
+..+|+ ++ + |+. ..+ ++. ...+..+.+++ .++++.++..+|.++|.+|
T Consensus 283 ~~~~l~-~~-~--g~~-------~~~-~~~-~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 283 GSVNLY-IW-D--GEI-------KPI-AKG-RHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp TEEEEE-EE-S--SSE-------EEE-ECS-SSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred CcEEEE-Ec-C--Cce-------EEE-ecC-CCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 876666 55 3 442 111 111 12232233333 6889999999999999998
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=161.55 Aligned_cols=196 Identities=14% Similarity=0.149 Sum_probs=133.6
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHc-----CcEEEEEecCCC------CCCchhHHhccc-c---cCCcChHhH
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-----GFIFAIAQIRGG------GELGRQWYENGK-F---LKKKNTFTD 578 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-----G~~v~~~~~RG~------g~~G~~~~~~~~-~---~~~~~~~~D 578 (758)
++.|+||++||..+.. ..|......|..+ |+.|+.++.++. +..+..|+.... . ......+++
T Consensus 21 ~~~p~vv~lHG~g~~~--~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 98 (239)
T 3u0v_A 21 RHSASLIFLHGSGDSG--QGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESIDV 98 (239)
T ss_dssp CCCEEEEEECCTTCCH--HHHHHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHHHH
T ss_pred CCCcEEEEEecCCCch--hhHHHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhHHH
Confidence 4689999999954432 2244445566654 799999998643 333444543111 1 111124444
Q ss_pred HHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCC
Q 004368 579 FIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPW 655 (758)
Q Consensus 579 ~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~ 655 (758)
+...+..++++ ..++.++++|+|+|+||++++.++.++|+.++++|+.+|+.+....
T Consensus 99 ~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-------------------- 158 (239)
T 3u0v_A 99 MCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASA-------------------- 158 (239)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCH--------------------
T ss_pred HHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhH--------------------
Confidence 44444444332 3468899999999999999999999999999999999987653211
Q ss_pred CHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHH
Q 004368 656 KEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLRE 735 (758)
Q Consensus 656 ~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~ 735 (758)
.+..+. ......||+|++||++|..||+.++.+++++|++.+.+.++++++ ++||... .+ .
T Consensus 159 ---~~~~~~-------~~~~~~pp~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~---g~~H~~~---~~---~ 219 (239)
T 3u0v_A 159 ---VYQALQ-------KSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFP---NVYHELS---KT---E 219 (239)
T ss_dssp ---HHHHHH-------HCCSCCCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEET---TCCSSCC---HH---H
T ss_pred ---HHHHHH-------hhccCCCCEEEEeeCCCCccCHHHHHHHHHHHHHcCCcEEEEEeC---CCCCcCC---HH---H
Confidence 011111 122356679999999999999999999999999998888777776 8999865 22 2
Q ss_pred HHHHHHHHHHhcCCC
Q 004368 736 AAFTYTFLMRALSML 750 (758)
Q Consensus 736 ~~~~~~fl~~~l~~~ 750 (758)
...+.+||.++|...
T Consensus 220 ~~~~~~~l~~~l~~~ 234 (239)
T 3u0v_A 220 LDILKLWILTKLPGE 234 (239)
T ss_dssp HHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhCCCc
Confidence 344679999998643
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=172.94 Aligned_cols=148 Identities=13% Similarity=0.085 Sum_probs=101.6
Q ss_pred eeEEEEeeCCC--C--eEEEEEEEeeccccccCCCCCEEEEecCCCccCCC---------CCCChHHHHHHHcCcEEEEE
Q 004368 485 FTERKWASASD--G--TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND---------PAFNSSRLSLLDRGFIFAIA 551 (758)
Q Consensus 485 ~~~~~~~~s~d--G--~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~---------~~~~~~~~~l~~~G~~v~~~ 551 (758)
...++.|.+.+ | ..+.++++.|++. ...++.|+||++||+.+.... ..|...+..|+++||+|+.+
T Consensus 45 ~~~~i~y~t~~~~g~~~~~~g~l~~P~~~-~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~V~~~ 123 (397)
T 3h2g_A 45 RVAEFTYATIGVEGEPATASGVLLIPGGE-RCSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGS 123 (397)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEECT-TCCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCEEEEE
T ss_pred EEEEEEEEecCCCCCeEEEEEEEEeCCCC-CCCCCCcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCEEEEe
Confidence 45566666554 4 4688999999876 556788999999997765432 23666778899999999999
Q ss_pred ecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHc-CCCCCCcEEEEEeChhHHHHHHHHhh-CC----C-ceeEEE
Q 004368 552 QIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN-CYCTKEKLCIEGRSAGGLLIGAVLNM-RP----D-LFKAAV 624 (758)
Q Consensus 552 ~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~-~p----~-~f~a~v 624 (758)
|+||+|+.+...............+.|.+.++..+.++ +..++++|+++|+|+||+++++++.. .+ + .+.+++
T Consensus 124 D~~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~~~~ 203 (397)
T 3h2g_A 124 DYLGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVASA 203 (397)
T ss_dssp CCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEEEEE
T ss_pred cCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceEEEe
Confidence 99999976422111000000113455666666655544 66668999999999999998877622 22 2 578888
Q ss_pred EcCCccchh
Q 004368 625 AAVPFVDVL 633 (758)
Q Consensus 625 ~~~~~~d~~ 633 (758)
+.++..|+.
T Consensus 204 ~~~~~~~l~ 212 (397)
T 3h2g_A 204 PISGPYALE 212 (397)
T ss_dssp EESCCSSHH
T ss_pred cccccccHH
Confidence 888887764
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=160.25 Aligned_cols=216 Identities=13% Similarity=0.116 Sum_probs=140.4
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCC-chhHHhcccccCCcChHhHHHHHHHHHHHcCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGEL-GRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 592 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~-G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 592 (758)
++.|+||++||..+... .|......|+++||.|+.+|+||+|.. +....... .-..-.+|+.++++++..+
T Consensus 20 ~~~~~vv~~HG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~---~~~~~~~d~~~~i~~l~~~--- 91 (251)
T 3dkr_A 20 GTDTGVVLLHAYTGSPN--DMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTKG---NPDIWWAESSAAVAHMTAK--- 91 (251)
T ss_dssp CSSEEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEECCCTTCSSSCTHHHHHHC---CHHHHHHHHHHHHHHHHTT---
T ss_pred CCCceEEEeCCCCCCHH--HHHHHHHHHHHCCCEEEecCCCCCCCCChhhhcCcc---cHHHHHHHHHHHHHHHHHh---
Confidence 45689999999655433 466667788889999999999999977 43322210 1112357888899998876
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhh-hccCCCCCHHH--------HHHH
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW-EEWGDPWKEEF--------YFYM 663 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~-~e~g~p~~~~~--------~~~l 663 (758)
.++++++|+|+||++++.++.++|++++++++.+|+.+......... ......+ ...+....... ...+
T Consensus 92 -~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (251)
T 3dkr_A 92 -YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGF-LKYAEYMNRLAGKSDESTQILAYLPGQLAAI 169 (251)
T ss_dssp -CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHH-HHHHHHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred -cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHH-HHHHHHHHhhcccCcchhhHHhhhHHHHHHH
Confidence 58999999999999999999999999999999998866321100000 0000000 00111101110 0111
Q ss_pred Hhc--CcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCCh-HHHHHHHHHHH
Q 004368 664 KSY--SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGR-FERLREAAFTY 740 (758)
Q Consensus 664 ~~~--sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~ 740 (758)
... .+...+.++++| +|+++|.+|..|++.++.++++++... .+.++++++ ++||...... ...+. ..+.
T Consensus 170 ~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~gH~~~~~~~~~~~~--~~i~ 242 (251)
T 3dkr_A 170 DQFATTVAADLNLVKQP-TFIGQAGQDELVDGRLAYQLRDALINA-ARVDFHWYD---DAKHVITVNSAHHALE--EDVI 242 (251)
T ss_dssp HHHHHHHHHTGGGCCSC-EEEEEETTCSSBCTTHHHHHHHHCTTC-SCEEEEEET---TCCSCTTTSTTHHHHH--HHHH
T ss_pred HHHHHHHhccccccCCC-EEEEecCCCcccChHHHHHHHHHhcCC-CCceEEEeC---CCCcccccccchhHHH--HHHH
Confidence 110 123445666787 999999999999999999999988764 344566665 8999875442 33232 2357
Q ss_pred HHHHHh
Q 004368 741 TFLMRA 746 (758)
Q Consensus 741 ~fl~~~ 746 (758)
+||.+.
T Consensus 243 ~fl~~~ 248 (251)
T 3dkr_A 243 AFMQQE 248 (251)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 888754
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-16 Score=152.25 Aligned_cols=178 Identities=13% Similarity=0.133 Sum_probs=131.8
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCCh--HHHHHHHcCcEEEEEecCCCCCC---ch
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS--SRLSLLDRGFIFAIAQIRGGGEL---GR 561 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~--~~~~l~~~G~~v~~~~~RG~g~~---G~ 561 (758)
+...++ .||.+|+++++.+.+ +.|+||++||+.+... .|.. ....|+++||.|+.+|+||.|.. ..
T Consensus 5 ~~~~~~-~~g~~l~~~~~~~~~------~~~~vv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~ 75 (207)
T 3bdi_A 5 QEEFID-VNGTRVFQRKMVTDS------NRRSIALFHGYSFTSM--DWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEK 75 (207)
T ss_dssp EEEEEE-ETTEEEEEEEECCTT------CCEEEEEECCTTCCGG--GGGGGTHHHHHHTTTEEEEEECCTTSTTSCCCTT
T ss_pred eeEEEe-eCCcEEEEEEEeccC------CCCeEEEECCCCCCcc--ccchHHHHHHHHhCCCeEEEEcCCcccccCcccC
Confidence 333343 488999998776653 4689999999765433 4666 77889999999999999998765 32
Q ss_pred hHHhcccccCCcC-hHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCC
Q 004368 562 QWYENGKFLKKKN-TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPT 640 (758)
Q Consensus 562 ~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~ 640 (758)
. .... +++|+.+.+..++++ .+.++++++|+|+||.++..++.++|++++++|+.+|... ..
T Consensus 76 ~--------~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~-~~------ 138 (207)
T 3bdi_A 76 Y--------GIDRGDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWV-ES------ 138 (207)
T ss_dssp T--------CCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSC-GG------
T ss_pred C--------CCCcchHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCccc-cc------
Confidence 1 1122 678888888777765 3457999999999999999999999999999999988621 00
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCC
Q 004368 641 IPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 720 (758)
Q Consensus 641 ~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 720 (758)
+ ...+.+++.| +|+++|++|..|++..+.++++.+. +.+.+.++ +
T Consensus 139 ----------~-----------------~~~~~~~~~p-~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~---~ 183 (207)
T 3bdi_A 139 ----------L-----------------KGDMKKIRQK-TLLVWGSKDHVVPIALSKEYASIIS----GSRLEIVE---G 183 (207)
T ss_dssp ----------G-----------------HHHHTTCCSC-EEEEEETTCTTTTHHHHHHHHHHST----TCEEEEET---T
T ss_pred ----------h-----------------hHHHhhccCC-EEEEEECCCCccchHHHHHHHHhcC----CceEEEeC---C
Confidence 0 1112334566 9999999999999988888877763 34566665 8
Q ss_pred CCCCC
Q 004368 721 AGHFS 725 (758)
Q Consensus 721 ~gH~~ 725 (758)
+||..
T Consensus 184 ~~H~~ 188 (207)
T 3bdi_A 184 SGHPV 188 (207)
T ss_dssp CCSCH
T ss_pred CCCCc
Confidence 89974
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-17 Score=177.05 Aligned_cols=148 Identities=16% Similarity=0.102 Sum_probs=112.1
Q ss_pred CCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCC------------CCCCC----hHHHHHHHcC
Q 004368 482 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN------------DPAFN----SSRLSLLDRG 545 (758)
Q Consensus 482 ~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~------------~~~~~----~~~~~l~~~G 545 (758)
.++..+.+.+++.+|..|+++++.|++. .++.|+||++||..+... ...|. ..+..|+++|
T Consensus 83 ~g~~~e~v~~~~~~g~~l~~~l~~P~~~---~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G 159 (391)
T 3g8y_A 83 EGYILEKWEFYPFPKSVSTFLVLKPEHL---KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEG 159 (391)
T ss_dssp TTEEEEEEEECCSTTCCEEEEEEEETTC---CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTT
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEeCCCC---CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCC
Confidence 4677889999999999999999999763 367899999999644321 01122 5678899999
Q ss_pred cEEEEEecCCCCCCchhHHhc--------cc----ccCC----cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHH
Q 004368 546 FIFAIAQIRGGGELGRQWYEN--------GK----FLKK----KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609 (758)
Q Consensus 546 ~~v~~~~~RG~g~~G~~~~~~--------~~----~~~~----~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~ 609 (758)
|+|+.+|+||.|+.+..-... .. ...+ ...+.|+.+++++|.+++.+|++||+|+|+|+||+++
T Consensus 160 ~~Vl~~D~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~a 239 (391)
T 3g8y_A 160 YVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPM 239 (391)
T ss_dssp CEEEECCCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHH
T ss_pred CEEEEecCCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHH
Confidence 999999999998776431100 00 0001 1123799999999999999999999999999999999
Q ss_pred HHHHhhCCCceeEEEEcCCccchh
Q 004368 610 GAVLNMRPDLFKAAVAAVPFVDVL 633 (758)
Q Consensus 610 ~~~~~~~p~~f~a~v~~~~~~d~~ 633 (758)
+.++.. ++.++|+|+.+++.++.
T Consensus 240 l~~a~~-~~~i~a~v~~~~~~~~~ 262 (391)
T 3g8y_A 240 MVLGVL-DKDIYAFVYNDFLCQTQ 262 (391)
T ss_dssp HHHHHH-CTTCCEEEEESCBCCHH
T ss_pred HHHHHc-CCceeEEEEccCCCCcc
Confidence 988886 46789999888777663
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-16 Score=162.67 Aligned_cols=201 Identities=11% Similarity=0.094 Sum_probs=132.9
Q ss_pred eeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCC-----CChHHHHHHHc----CcEEEEEecCC
Q 004368 485 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-----FNSSRLSLLDR----GFIFAIAQIRG 555 (758)
Q Consensus 485 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~-----~~~~~~~l~~~----G~~v~~~~~RG 555 (758)
..+.+.+.|.+| .++++++.|++. ..++++|+|+++||+.+....+. +......|+++ |++|+.+|.+|
T Consensus 40 ~~~~~~~~s~~~-~~~~~vy~P~~~-~~~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~pd~~~ 117 (297)
T 1gkl_A 40 RIVKETYTGING-TKSLNVYLPYGY-DPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNG 117 (297)
T ss_dssp EEEEEEEEETTE-EEEEEEEECTTC-CTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEECCSCS
T ss_pred eEEEEEEEcCCC-EEEEEEEeCCCC-CCCCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEEecCcC
Confidence 457788888886 899999999987 55678999999999866433221 11234466666 49999999998
Q ss_pred CCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCC------------CCCCcEEEEEeChhHHHHHHHHhhCCCceeEE
Q 004368 556 GGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY------------CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAA 623 (758)
Q Consensus 556 ~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~------------~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~ 623 (758)
+.+.+..|.. ...+|++ .++.+... .|+++++|+|+|+||++++.++.++|++|+++
T Consensus 118 ~~~~~~~~~~--------~~~~~l~---~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~f~~~ 186 (297)
T 1gkl_A 118 GNCTAQNFYQ--------EFRQNVI---PFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYF 186 (297)
T ss_dssp TTCCTTTHHH--------HHHHTHH---HHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEE
T ss_pred CccchHHHHH--------HHHHHHH---HHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchhhhee
Confidence 6544433321 1123444 44443322 37789999999999999999999999999999
Q ss_pred EEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHH
Q 004368 624 VAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKL 703 (758)
Q Consensus 624 v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L 703 (758)
++.+|...+... . +.+ .....+.+. ...+++...+ +++.+|++|..+ .++++++++|
T Consensus 187 v~~sg~~~~~~~---------~--~~~-----~~~~~~~~~----~~~~~~~~~~-l~~~~G~~D~~~--~~~~~l~~~L 243 (297)
T 1gkl_A 187 MPLSGDYWYGNS---------P--QDK-----ANSIAEAIN----RSGLSKREYF-VFAATGSEDIAY--ANMNPQIEAM 243 (297)
T ss_dssp EEESCCCCBSSS---------H--HHH-----HHHHHHHHH----HHTCCTTSCE-EEEEEETTCTTH--HHHHHHHHHH
T ss_pred eEeccccccCCc---------c--chh-----hhHHHHHHh----hccCCcCcEE-EEEEeCCCcccc--hhHHHHHHHH
Confidence 999997543210 0 000 000111111 1123322344 777899999764 5889999999
Q ss_pred HhcC----------CCCceEEEEecCCCCCC
Q 004368 704 REMK----------TDDNILLFKCELGAGHF 724 (758)
Q Consensus 704 ~~~~----------~~~~~~~~~~~~~~gH~ 724 (758)
++++ .++++.++ +++||.
T Consensus 244 ~~~g~~~~~~~~~~~~~~~~~~---~g~gH~ 271 (297)
T 1gkl_A 244 KALPHFDYTSDFSKGNFYFLVA---PGATHW 271 (297)
T ss_dssp HTSTTCCBBSCTTTCCEEEEEE---TTCCSS
T ss_pred HHcCCccccccccCCceEEEEC---CCCCcC
Confidence 9988 35555555 488995
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.68 E-value=9.7e-17 Score=164.69 Aligned_cols=215 Identities=12% Similarity=0.101 Sum_probs=139.5
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
+.|+||++||..+... .|......|+++||.|+.+|+||.|......... .-....+|+.++++++..+ .
T Consensus 39 ~~~~vv~~HG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~----~~~~~~~d~~~~i~~l~~~----~ 108 (270)
T 3rm3_A 39 GPVGVLLVHGFTGTPH--SMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERT----TFHDWVASVEEGYGWLKQR----C 108 (270)
T ss_dssp SSEEEEEECCTTCCGG--GTHHHHHHHHHTTCEEEECCCTTCSSCHHHHHTC----CHHHHHHHHHHHHHHHHTT----C
T ss_pred CCeEEEEECCCCCChh--HHHHHHHHHHHCCCEEEEeCCCCCCCCccccccC----CHHHHHHHHHHHHHHHHhh----C
Confidence 4599999999655433 3667778889999999999999999876543221 1123357888889998876 5
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCC-CCCCCChhhhhccCC----C---------CCHHHH
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD-PTIPLTTAEWEEWGD----P---------WKEEFY 660 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~-~~~~~~~~~~~e~g~----p---------~~~~~~ 660 (758)
++++++|+|+||++++.++.++|+ ++++|+.+|..++...... .........+..++. + .....+
T Consensus 109 ~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (270)
T 3rm3_A 109 QTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASL 187 (270)
T ss_dssp SEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCCCCCSEEEHHHH
T ss_pred CcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHhhcccccChhHH
Confidence 899999999999999999999999 9999999997664322100 000000000000000 0 001111
Q ss_pred HHHHh--cCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChH-HHHHHHH
Q 004368 661 FYMKS--YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRF-ERLREAA 737 (758)
Q Consensus 661 ~~l~~--~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~ 737 (758)
..+.. .+....+.++++| +|+++|++|..|++.++.++++++... +.++++++ ++||....... +.+. .
T Consensus 188 ~~~~~~~~~~~~~~~~~~~P-~lii~G~~D~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~gH~~~~~~~~~~~~--~ 259 (270)
T 3rm3_A 188 LQLARLMAQTKAKLDRIVCP-ALIFVSDEDHVVPPGNADIIFQGISST--EKEIVRLR---NSYHVATLDYDQPMII--E 259 (270)
T ss_dssp HHHHHHHHHHHHTGGGCCSC-EEEEEETTCSSSCTTHHHHHHHHSCCS--SEEEEEES---SCCSCGGGSTTHHHHH--H
T ss_pred HHHHHHHHHHHhhhhhcCCC-EEEEECCCCcccCHHHHHHHHHhcCCC--cceEEEeC---CCCcccccCccHHHHH--H
Confidence 11100 0122345666788 999999999999999999998887642 33566665 89998654321 2222 2
Q ss_pred HHHHHHHHhcC
Q 004368 738 FTYTFLMRALS 748 (758)
Q Consensus 738 ~~~~fl~~~l~ 748 (758)
.+.+||.++.|
T Consensus 260 ~i~~fl~~~~~ 270 (270)
T 3rm3_A 260 RSLEFFAKHAG 270 (270)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHhcCC
Confidence 36789987753
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=172.85 Aligned_cols=146 Identities=13% Similarity=0.058 Sum_probs=111.0
Q ss_pred CCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCC------------CCCCC----hHHHHHHHc
Q 004368 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN------------DPAFN----SSRLSLLDR 544 (758)
Q Consensus 481 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~------------~~~~~----~~~~~l~~~ 544 (758)
.+++..+.+.+++.||.+|+++++.|++. .++.|+||++||+.+... ...|. ..+..|+++
T Consensus 87 ~~g~~~e~v~~~~~~g~~l~~~l~~P~~~---~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~ 163 (398)
T 3nuz_A 87 REGYRLEKWEFYPLPKCVSTFLVLIPDNI---NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKE 163 (398)
T ss_dssp CSSEEEEEEEECCSTTBCEEEEEEEESSC---CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTT
T ss_pred cCCEEEEEEEEEcCCCcEEEEEEEeCCCC---CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHC
Confidence 34677899999999999999999999863 367899999999754321 11232 467899999
Q ss_pred CcEEEEEecCCCCCCchhHHh-----------------cccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHH
Q 004368 545 GFIFAIAQIRGGGELGRQWYE-----------------NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGL 607 (758)
Q Consensus 545 G~~v~~~~~RG~g~~G~~~~~-----------------~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~ 607 (758)
||+|+.+|+||.|+.+..... .+. ........|+.++++||.+++.+|++||+|+|+|+||+
T Consensus 164 Gy~Vl~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~ 242 (398)
T 3nuz_A 164 GYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGW-SYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTE 242 (398)
T ss_dssp TCEEEEECCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHH
T ss_pred CCEEEEecCCCCCccccccccccccccchhhhhhHHhhcCC-CHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHH
Confidence 999999999999877543210 000 00112347999999999999999999999999999999
Q ss_pred HHHHHHhhCCCceeEEEEcCCccc
Q 004368 608 LIGAVLNMRPDLFKAAVAAVPFVD 631 (758)
Q Consensus 608 l~~~~~~~~p~~f~a~v~~~~~~d 631 (758)
+++.+++.. +.++|+|+.+++..
T Consensus 243 ~a~~~aa~~-~~i~a~v~~~~~~~ 265 (398)
T 3nuz_A 243 PMMVLGTLD-TSIYAFVYNDFLCQ 265 (398)
T ss_dssp HHHHHHHHC-TTCCEEEEESCBCC
T ss_pred HHHHHHhcC-CcEEEEEEeccccc
Confidence 999888875 57788888655544
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=155.03 Aligned_cols=190 Identities=16% Similarity=0.098 Sum_probs=130.8
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHH--cCcEEEEEecCC------CCCCchhHHhc-ccc---cCCcCh----Hh
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLD--RGFIFAIAQIRG------GGELGRQWYEN-GKF---LKKKNT----FT 577 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~--~G~~v~~~~~RG------~g~~G~~~~~~-~~~---~~~~~~----~~ 577 (758)
++.|+||++||..+.. ..|......|++ +||.|+.+|.+| +|..+..|++. +.. ...... .+
T Consensus 12 ~~~~~vv~~HG~~~~~--~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~~~~~ 89 (218)
T 1auo_A 12 PADACVIWLHGLGADR--YDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAK 89 (218)
T ss_dssp CCSEEEEEECCTTCCT--TTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHHH
T ss_pred CCCcEEEEEecCCCCh--hhHHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCcccccchHHHHHHHH
Confidence 5689999999965433 346666778887 999999998774 22222333321 111 011122 34
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHh-hCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCC
Q 004368 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN-MRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWK 656 (758)
Q Consensus 578 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~ 656 (758)
|+.+.++++.+ ..+++++++++|+|+||.+++.++. ++|++++++|+.+|+.+. . .++. +
T Consensus 90 ~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~-~-----~~~~------~------ 150 (218)
T 1auo_A 90 MVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPT-F-----GDEL------E------ 150 (218)
T ss_dssp HHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTT-C-----CTTC------C------
T ss_pred HHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCC-c-----hhhh------h------
Confidence 45555555555 3468899999999999999999999 999999999999998664 0 1100 0
Q ss_pred HHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHH
Q 004368 657 EEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREA 736 (758)
Q Consensus 657 ~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~ 736 (758)
+. ..+.+.| +|+++|++|..||+.++++++++++..+.+.+++++ + +||.... + ..
T Consensus 151 ---------~~----~~~~~~P-~l~i~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~---~-~gH~~~~---~---~~ 206 (218)
T 1auo_A 151 ---------LS----ASQQRIP-ALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEY---P-MGHEVLP---Q---EI 206 (218)
T ss_dssp ---------CC----HHHHTCC-EEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEE---S-CSSSCCH---H---HH
T ss_pred ---------hh----hcccCCC-EEEEEeCCCceecHHHHHHHHHHHHhCCCceEEEEe---c-CCCccCH---H---HH
Confidence 00 0123566 999999999999999999999999988877666655 4 8997532 2 22
Q ss_pred HHHHHHHHHhcC
Q 004368 737 AFTYTFLMRALS 748 (758)
Q Consensus 737 ~~~~~fl~~~l~ 748 (758)
..+.+||.++|+
T Consensus 207 ~~~~~~l~~~l~ 218 (218)
T 1auo_A 207 HDIGAWLAARLG 218 (218)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 346789988763
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.7e-16 Score=166.93 Aligned_cols=146 Identities=20% Similarity=0.191 Sum_probs=101.6
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccc--cCCCCCEEEEecCCCccCCCCC----CChHHHHHHHcCcEEEEEecCCC
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVK--LDGSDPLLLYGYGSYEICNDPA----FNSSRLSLLDRGFIFAIAQIRGG 556 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~--~~~~~P~vl~~hGg~~~~~~~~----~~~~~~~l~~~G~~v~~~~~RG~ 556 (758)
++..+...+++.||..+.++.+.|... . ..++.|+||++||..+....+. +......|+++||.|+.+|+||+
T Consensus 24 ~~~~~~~~~~~~dG~~l~~~~~~~~~~-~~~~~~~~~~vvl~HG~~~~~~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G~ 102 (377)
T 1k8q_A 24 GYPAEEYEVVTEDGYILGIDRIPYGRK-NSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN 102 (377)
T ss_dssp TCCCEEEEEECTTSEEEEEEEECSCSS-CCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred CCCceEEEeEcCCCCEEEEEEecCCCC-CccccCCCCeEEEECCCCCchhhhhcCCCcccHHHHHHHCCCCEEEecCCCC
Confidence 455678888999999999886654431 1 1146799999999766543322 22334588889999999999999
Q ss_pred CCCchhHH--hcccc--cCCc-ChHh-HHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCC---ceeEEEEcC
Q 004368 557 GELGRQWY--ENGKF--LKKK-NTFT-DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAV 627 (758)
Q Consensus 557 g~~G~~~~--~~~~~--~~~~-~~~~-D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~ 627 (758)
|.....-. ..... .... .-.+ |+.++++++.++- +.+++.++|+|+||.+++.++.++|+ .++++|+.+
T Consensus 103 G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~~ 180 (377)
T 1k8q_A 103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALA 180 (377)
T ss_dssp TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEES
T ss_pred CCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHhc--CcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEeC
Confidence 87643100 00000 0011 1123 7777888877652 34789999999999999999999998 899999998
Q ss_pred Cccc
Q 004368 628 PFVD 631 (758)
Q Consensus 628 ~~~d 631 (758)
|...
T Consensus 181 ~~~~ 184 (377)
T 1k8q_A 181 PVAT 184 (377)
T ss_dssp CCSC
T ss_pred Cchh
Confidence 8754
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-17 Score=169.45 Aligned_cols=213 Identities=17% Similarity=0.113 Sum_probs=138.6
Q ss_pred eeEEEEeeCC-CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHH-HHcC---cEEEEEecCCCCCC
Q 004368 485 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSL-LDRG---FIFAIAQIRGGGEL 559 (758)
Q Consensus 485 ~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l-~~~G---~~v~~~~~RG~g~~ 559 (758)
..+.+.+.|. +|.++.++++.|++. .+++++|+|+++||+........+......+ .+.| ++|+.+++|+++.+
T Consensus 17 ~~~~~~~~s~~~g~~~~~~v~~P~~~-~~~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~~~~~~~~ 95 (275)
T 2qm0_A 17 NTEQWKMYSKLEGKEYQIHISKPKQP-APDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAF 95 (275)
T ss_dssp TEEEEEEECTTTCCEEEEEEECCSSC-CCTTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEECSCSSSC
T ss_pred CceEEEEEecCCCCEEEEEEECCCCC-CCCCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEECCCCCCcC
Confidence 3577888886 788999999999987 6667899999999975311100010111112 2457 99999999986544
Q ss_pred chh--HHhcccc----------------cC-CcChHhHHH--HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCC
Q 004368 560 GRQ--WYENGKF----------------LK-KKNTFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD 618 (758)
Q Consensus 560 G~~--~~~~~~~----------------~~-~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~ 618 (758)
+.. ..+.... .. +...+.|++ ..+.++.++..+|+++++|+|+|+||++++.++.++|+
T Consensus 96 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~~~~~~p~ 175 (275)
T 2qm0_A 96 SGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALHILFTNLN 175 (275)
T ss_dssp CHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCGG
T ss_pred cccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHHHHHhCch
Confidence 321 1111100 00 111344443 34556666656889999999999999999999999999
Q ss_pred ceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHH
Q 004368 619 LFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAK 698 (758)
Q Consensus 619 ~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~ 698 (758)
+|+++++.+|.+++..... .+ . .+.+ +...+ ...... +++++||+.|..+++.++++
T Consensus 176 ~f~~~~~~s~~~~~~~~~~-----------~~--~---~~~~--~~~~~----~~~~~~-~~~l~~G~~D~~~~~~~~~~ 232 (275)
T 2qm0_A 176 AFQNYFISSPSIWWNNKSV-----------LE--K---EENL--IIELN----NAKFET-GVFLTVGSLEREHMVVGANE 232 (275)
T ss_dssp GCSEEEEESCCTTHHHHGG-----------GG--G---TTHH--HHHHH----TCSSCE-EEEEEEETTSCHHHHHHHHH
T ss_pred hhceeEEeCceeeeChHHH-----------HH--H---HHHH--Hhhhc----ccCCCc-eEEEEeCCcccchhhHHHHH
Confidence 9999999999865432110 00 0 0111 11111 122234 59999999999999999999
Q ss_pred HHHHH---HhcCCCCceEEEEecCCCCCC
Q 004368 699 FVAKL---REMKTDDNILLFKCELGAGHF 724 (758)
Q Consensus 699 ~~~~L---~~~~~~~~~~~~~~~~~~gH~ 724 (758)
++++| ++.|.++++.+++ +++|+
T Consensus 233 ~~~~L~~~~~~g~~~~~~~~~---g~~H~ 258 (275)
T 2qm0_A 233 LSERLLQVNHDKLKFKFYEAE---GENHA 258 (275)
T ss_dssp HHHHHHHCCCTTEEEEEEEET---TCCTT
T ss_pred HHHHHHhcccCCceEEEEECC---CCCcc
Confidence 99999 4556655555554 88885
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=162.20 Aligned_cols=184 Identities=17% Similarity=0.148 Sum_probs=128.3
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEE--ecCCCCCCchhHHhccc-ccCC----cChHhHHHHHHHHH
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIA--QIRGGGELGRQWYENGK-FLKK----KNTFTDFIACAEYL 586 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~--~~RG~g~~G~~~~~~~~-~~~~----~~~~~D~~~~~~~l 586 (758)
++.|+||++||+.+... .|......|++ +|.|+.+ |+||.|+++ |..... .... ....+|+.++++++
T Consensus 60 ~~~p~vv~~HG~~~~~~--~~~~~~~~l~~-~~~v~~~~~d~~g~g~s~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGDEN--QFFDFGARLLP-QATILSPVGDVSEHGAAR--FFRRTGEGVYDMVDLERATGKMADFIKAN 134 (251)
T ss_dssp TTSCEEEEECCTTCCHH--HHHHHHHHHST-TSEEEEECCSEEETTEEE--SSCBCGGGCBCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHh--HHHHHHHhcCC-CceEEEecCCcCCCCCcc--cccCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999654322 24444445544 6999999 788887542 221110 0011 12357788888887
Q ss_pred HHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhc
Q 004368 587 IKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSY 666 (758)
Q Consensus 587 ~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~ 666 (758)
.++. +.++++++|+|+||++++.++.++|++++++|+.+|+.+...
T Consensus 135 ~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~-------------------------------- 180 (251)
T 2r8b_A 135 REHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP-------------------------------- 180 (251)
T ss_dssp HHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC--------------------------------
T ss_pred Hhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc--------------------------------
Confidence 7664 779999999999999999999999999999999999754211
Q ss_pred CcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 667 SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 667 sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
......++.| +|+++|++|..|++.++.+++++|++++...++ .++ ++||... .+ ....+.+||.++
T Consensus 181 --~~~~~~~~~P-~li~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~gH~~~---~~---~~~~~~~~l~~~ 247 (251)
T 2r8b_A 181 --KISPAKPTRR-VLITAGERDPICPVQLTKALEESLKAQGGTVET-VWH---PGGHEIR---SG---EIDAVRGFLAAY 247 (251)
T ss_dssp --CCCCCCTTCE-EEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEE-EEE---SSCSSCC---HH---HHHHHHHHHGGG
T ss_pred --cccccccCCc-EEEeccCCCccCCHHHHHHHHHHHHHcCCeEEE-Eec---CCCCccC---HH---HHHHHHHHHHHh
Confidence 0011223566 999999999999999999999999987765443 344 7899763 22 223467899988
Q ss_pred cCC
Q 004368 747 LSM 749 (758)
Q Consensus 747 l~~ 749 (758)
|+.
T Consensus 248 l~~ 250 (251)
T 2r8b_A 248 GGG 250 (251)
T ss_dssp C--
T ss_pred cCC
Confidence 864
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.67 E-value=7e-16 Score=147.40 Aligned_cols=159 Identities=13% Similarity=0.061 Sum_probs=114.6
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
++.|+||++||..+....+.+......|.++||.|+.+|+||.|..... .......+++.++++++.+.. +
T Consensus 2 ~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~-------~~~~~~~~~~~~~~~~~~~~~--~ 72 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDL-------GQLGDVRGRLQRLLEIARAAT--E 72 (176)
T ss_dssp CSSCEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEECCCCHHHHTCGGG-------CTTCCHHHHHHHHHHHHHHHH--T
T ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHHhcC--C
Confidence 4579999999966543322233555678889999999999997764321 111222345555677776654 4
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccC
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVK 673 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~ 673 (758)
.++++++|+|+||.++..++.++| ++++|+.+|..+...+ .. +.
T Consensus 73 ~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~-------------~~---------------------~~ 116 (176)
T 2qjw_A 73 KGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPL-------------PA---------------------LD 116 (176)
T ss_dssp TSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTB-------------CC---------------------CC
T ss_pred CCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCcccc-------------Cc---------------------cc
Confidence 589999999999999999999988 8999999887653211 00 34
Q ss_pred CCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCC
Q 004368 674 AQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS 727 (758)
Q Consensus 674 ~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~ 727 (758)
+.+.| +|+++|++|..||+.++.++++.+ +.+++++ ++||....
T Consensus 117 ~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~----~~~H~~~~ 160 (176)
T 2qjw_A 117 AAAVP-ISIVHAWHDELIPAADVIAWAQAR-----SARLLLV----DDGHRLGA 160 (176)
T ss_dssp CCSSC-EEEEEETTCSSSCHHHHHHHHHHH-----TCEEEEE----SSCTTCTT
T ss_pred ccCCC-EEEEEcCCCCccCHHHHHHHHHhC-----CceEEEe----CCCccccc
Confidence 45677 999999999999999999998887 3444444 57998743
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-16 Score=154.28 Aligned_cols=190 Identities=14% Similarity=0.116 Sum_probs=130.3
Q ss_pred cCCCCCEEEEecCCCccCCCCCCChHHHHHHH--cCcEEEEEecCCCC------CCchhHHhc-ccc---cCCcChH---
Q 004368 512 LDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD--RGFIFAIAQIRGGG------ELGRQWYEN-GKF---LKKKNTF--- 576 (758)
Q Consensus 512 ~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~--~G~~v~~~~~RG~g------~~G~~~~~~-~~~---~~~~~~~--- 576 (758)
.+++.|+||++||..+.. ..|......|++ +||.|+++|+||.+ ..+..|++. +.. ......+
T Consensus 20 ~~~~~~~vv~lHG~~~~~--~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~~~ 97 (226)
T 3cn9_A 20 APNADACIIWLHGLGADR--TDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPARAIDEDQLNAS 97 (226)
T ss_dssp CTTCCEEEEEECCTTCCG--GGGHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSSTTCBCHHHHHHH
T ss_pred CCCCCCEEEEEecCCCCh--HHHHHHHHHHhhcCCCcEEEeecCCCCccccCCCCccccccccccccccccccchhHHHH
Confidence 446789999999975433 236666677887 99999999888532 112222211 111 1111223
Q ss_pred -hHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHh-hCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCC
Q 004368 577 -TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN-MRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP 654 (758)
Q Consensus 577 -~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p 654 (758)
+|+.+.++++.+ ..+++++++++|+|+||.+++.++. ++|++++++|+.+|+.+....+
T Consensus 98 ~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~------------------ 158 (226)
T 3cn9_A 98 ADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDL------------------ 158 (226)
T ss_dssp HHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGGC------------------
T ss_pred HHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchhh------------------
Confidence 344444444444 2467899999999999999999999 9999999999999986643211
Q ss_pred CCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHH
Q 004368 655 WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLR 734 (758)
Q Consensus 655 ~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~ 734 (758)
.+. ..+++.| +|+++|++|..||+.++.++++.+...+.+.+++++ + +||.... +.
T Consensus 159 ----------~~~----~~~~~~P-~lii~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~---~-~gH~~~~---~~-- 214 (226)
T 3cn9_A 159 ----------ALD----ERHKRIP-VLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDY---P-MGHEVSL---EE-- 214 (226)
T ss_dssp ----------CCC----TGGGGCC-EEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEE---S-CCSSCCH---HH--
T ss_pred ----------hhc----ccccCCC-EEEEecCCCCccCHHHHHHHHHHHHHcCCceeEEEe---c-CCCCcch---hh--
Confidence 001 1233566 999999999999999999999999998877666655 4 8997632 22
Q ss_pred HHHHHHHHHHHhc
Q 004368 735 EAAFTYTFLMRAL 747 (758)
Q Consensus 735 ~~~~~~~fl~~~l 747 (758)
...+.+||.++|
T Consensus 215 -~~~i~~~l~~~l 226 (226)
T 3cn9_A 215 -IHDIGAWLRKRL 226 (226)
T ss_dssp -HHHHHHHHHHHC
T ss_pred -HHHHHHHHHhhC
Confidence 234678998764
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.6e-16 Score=160.08 Aligned_cols=240 Identities=13% Similarity=0.084 Sum_probs=149.5
Q ss_pred eEEEEeeCC-CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCCh---HHHHHHHcCcEEEEEecCCCCCCch
Q 004368 486 TERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---SRLSLLDRGFIFAIAQIRGGGELGR 561 (758)
Q Consensus 486 ~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~~~RG~g~~G~ 561 (758)
++.+.+.|. .|.+++++ .|++. .|+|+++||..+......|.. ....+.++|++|+.+|.+|++.|.
T Consensus 6 ~~~~~~~s~~~~~~~~v~--~~p~~------~~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~~~~- 76 (280)
T 1dqz_A 6 VEYLQVPSASMGRDIKVQ--FQGGG------PHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYT- 76 (280)
T ss_dssp EEEEEEEETTTTEEEEEE--EECCS------SSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTCTTS-
T ss_pred EEEEEEECcccCceeEEE--EcCCC------CCEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCcccc-
Confidence 455556554 56777765 34432 158999999753122222322 123566789999999988654332
Q ss_pred hHHhcccc--cCCcChHhHHH--HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc-
Q 004368 562 QWYENGKF--LKKKNTFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM- 636 (758)
Q Consensus 562 ~~~~~~~~--~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~- 636 (758)
.|...... ......+.+++ +++.++.++..+++++++|+|+||||++++.++.++|++|+++|+.+|.+++....
T Consensus 77 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~ 156 (280)
T 1dqz_A 77 DWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWW 156 (280)
T ss_dssp BCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTTH
T ss_pred CCCCCCccccccccccHHHHHHHHHHHHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccccCcch
Confidence 11111000 00123344432 34455554334677899999999999999999999999999999999987753210
Q ss_pred --------CCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCC--CCCeEEEeccCCCC--------------CCC
Q 004368 637 --------LDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ--NYPHILVTAGLNDP--------------RVM 692 (758)
Q Consensus 637 --------~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~--~~P~~Li~~G~~D~--------------~V~ 692 (758)
.+.. .+. ....||++..+ .+.+.+|..++.+. +-++++|.||+.|+ .++
T Consensus 157 ~~~~~~~~~~~~-~~~--~~~~~g~~~~~----~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~~ 229 (280)
T 1dqz_A 157 PTLIGLAMNDSG-GYN--ANSMWGPSSDP----AWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLT 229 (280)
T ss_dssp HHHHHHHHHHTT-SCC--HHHHHCSTTSH----HHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHH
T ss_pred hhhHHHHhhhcc-CcC--HHHhcCCCCch----hhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccchhhHHHHH
Confidence 0000 000 11345666432 23567888666544 22459999999997 578
Q ss_pred ChHHHHHHHHHHhcC-CCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 693 YSEPAKFVAKLREMK-TDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 693 ~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
+.++++++++|++.| .++++..+ ++++|.. ...-.+..+.+.||.+.||
T Consensus 230 ~~~~~~~~~~L~~~g~~~~~~~~~---~~g~H~~----~~w~~~l~~~l~~l~~~l~ 279 (280)
T 1dqz_A 230 LRTNQTFRDTYAADGGRNGVFNFP---PNGTHSW----PYWNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECC---SCCCSSH----HHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCceEEEec---CCCccCh----HHHHHHHHHHHHHHHHHhC
Confidence 899999999999998 77654443 4789952 2223334556789988875
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-16 Score=154.69 Aligned_cols=184 Identities=17% Similarity=0.131 Sum_probs=128.3
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccccc-C----CcChHhHHHHHHHHHHHcC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL-K----KKNTFTDFIACAEYLIKNC 590 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~-~----~~~~~~D~~~~~~~l~~~~ 590 (758)
.|+||++||..+... .|......|. .||.|+.+|.++....|..|+...... . -....+|+.+.++++.++.
T Consensus 30 ~p~vv~lHG~g~~~~--~~~~~~~~l~-~~~~vv~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (223)
T 3b5e_A 30 RECLFLLHGSGVDET--TLVPLARRIA-PTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEAAKRH 106 (223)
T ss_dssp CCEEEEECCTTBCTT--TTHHHHHHHC-TTSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCCCCHH--HHHHHHHhcC-CCceEEEeCCCCCcCCccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 499999999654433 3555555555 499999999887433255554321100 0 1123456777777777665
Q ss_pred CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCccc
Q 004368 591 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVD 670 (758)
Q Consensus 591 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~ 670 (758)
.+++++++++|+|+||.+++.++.++|++++++|+.+|..+... + +
T Consensus 107 ~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~-------------------~-------------~-- 152 (223)
T 3b5e_A 107 GLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH-------------------V-------------P-- 152 (223)
T ss_dssp TCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS-------------------C-------------C--
T ss_pred CCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCccc-------------------c-------------c--
Confidence 57889999999999999999999999999999999998753210 0 0
Q ss_pred ccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 671 NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 671 ~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
.....++| +|++||++|..||+.+++ ++++|++.+.+.+++++ + +||.... +.. ..+.+||.+.+.
T Consensus 153 ~~~~~~~P-~li~~G~~D~~v~~~~~~-~~~~l~~~g~~~~~~~~---~-~gH~~~~---~~~---~~i~~~l~~~~~ 218 (223)
T 3b5e_A 153 ATDLAGIR-TLIIAGAADETYGPFVPA-LVTLLSRHGAEVDARII---P-SGHDIGD---PDA---AIVRQWLAGPIA 218 (223)
T ss_dssp CCCCTTCE-EEEEEETTCTTTGGGHHH-HHHHHHHTTCEEEEEEE---S-CCSCCCH---HHH---HHHHHHHHCC--
T ss_pred cccccCCC-EEEEeCCCCCcCCHHHHH-HHHHHHHCCCceEEEEe---c-CCCCcCH---HHH---HHHHHHHHhhhh
Confidence 11223566 999999999999999999 99999998877666655 3 8997632 222 346788876553
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=151.48 Aligned_cols=184 Identities=15% Similarity=0.130 Sum_probs=130.3
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEE--ecCCCCCCchhHHhccc-ccCC----cChHhHHHHHHHHH
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIA--QIRGGGELGRQWYENGK-FLKK----KNTFTDFIACAEYL 586 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~--~~RG~g~~G~~~~~~~~-~~~~----~~~~~D~~~~~~~l 586 (758)
++.|+||++||..+.. ..|......|++ ||.|+.+ |.||.|..+ |+.... .... ...+.|+.+.++++
T Consensus 36 ~~~~~vv~~HG~~~~~--~~~~~~~~~l~~-g~~v~~~~~d~~g~g~s~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (226)
T 2h1i_A 36 TSKPVLLLLHGTGGNE--LDLLPLAEIVDS-EASVLSVRGNVLENGMPR--FFRRLAEGIFDEEDLIFRTKELNEFLDEA 110 (226)
T ss_dssp TTSCEEEEECCTTCCT--TTTHHHHHHHHT-TSCEEEECCSEEETTEEE--SSCEEETTEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCCh--hHHHHHHHHhcc-CceEEEecCcccCCcchh--hccccCccCcChhhHHHHHHHHHHHHHHH
Confidence 4689999999976443 335555566666 9999999 888877432 111100 0000 12244566667776
Q ss_pred HHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhc
Q 004368 587 IKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSY 666 (758)
Q Consensus 587 ~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~ 666 (758)
.++..+++++++++|+|+||++++.++.++|++++++|+.+|..+...
T Consensus 111 ~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~-------------------------------- 158 (226)
T 2h1i_A 111 AKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG-------------------------------- 158 (226)
T ss_dssp HHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS--------------------------------
T ss_pred HhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc--------------------------------
Confidence 777777899999999999999999999999999999999999754211
Q ss_pred CcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 667 SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 667 sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
.......+.| +|+++|++|..+++.++.++++++.+.+.+.++ +++ ++||... .+ ....+.+||.++
T Consensus 159 --~~~~~~~~~p-~l~~~G~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~gH~~~---~~---~~~~~~~~l~~~ 225 (226)
T 2h1i_A 159 --MQLANLAGKS-VFIAAGTNDPICSSAESEELKVLLENANANVTM-HWE---NRGHQLT---MG---EVEKAKEWYDKA 225 (226)
T ss_dssp --CCCCCCTTCE-EEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEE-EEE---SSTTSCC---HH---HHHHHHHHHHHH
T ss_pred --cccccccCCc-EEEEeCCCCCcCCHHHHHHHHHHHHhcCCeEEE-EeC---CCCCCCC---HH---HHHHHHHHHHHh
Confidence 0001112455 999999999999999999999999987766655 666 8999863 22 223457888876
Q ss_pred c
Q 004368 747 L 747 (758)
Q Consensus 747 l 747 (758)
|
T Consensus 226 l 226 (226)
T 2h1i_A 226 F 226 (226)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-16 Score=161.63 Aligned_cols=221 Identities=15% Similarity=0.111 Sum_probs=136.1
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCC-CCCchhHH
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGG-GELGRQWY 564 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~-g~~G~~~~ 564 (758)
.+...+++.||.+|.++...|++. ..++.|+||++||..+.. ..|...+..|+++||.|+.+|+||+ |.+.....
T Consensus 7 ~~~~~i~~~dG~~l~~~~~~p~~~--~~~~~~~VvllHG~g~~~--~~~~~~~~~L~~~G~~Vi~~D~rGh~G~S~~~~~ 82 (305)
T 1tht_A 7 TIAHVLRVNNGQELHVWETPPKEN--VPFKNNTILIASGFARRM--DHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSID 82 (305)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTT--SCCCSCEEEEECTTCGGG--GGGHHHHHHHHTTTCCEEEECCCBCC--------
T ss_pred ceEEEEEcCCCCEEEEEEecCccc--CCCCCCEEEEecCCccCc--hHHHHHHHHHHHCCCEEEEeeCCCCCCCCCCccc
Confidence 356667788999999886655432 123468999999954433 2466677788889999999999998 65533211
Q ss_pred hcccccCC-cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc---CCCC
Q 004368 565 ENGKFLKK-KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM---LDPT 640 (758)
Q Consensus 565 ~~~~~~~~-~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~---~~~~ 640 (758)
... ..-.+|+.+++++|...+ .+++.++|+|+||.++..++.+ | .++++|+.+|+.++.... ....
T Consensus 83 -----~~~~~~~~~D~~~~~~~l~~~~---~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~~~~~~~~~~~~~ 152 (305)
T 1tht_A 83 -----EFTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVNLRDTLEKALGFD 152 (305)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSCHHHHHHHHHSSC
T ss_pred -----ceehHHHHHHHHHHHHHHHhCC---CCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchhHHHHHHHHhhhh
Confidence 011 122467888888887543 4789999999999999999887 7 788998888765432110 0000
Q ss_pred C-CCChhhhh---cc-CCCCCHHHH-HHHHhc------CcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCC
Q 004368 641 I-PLTTAEWE---EW-GDPWKEEFY-FYMKSY------SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKT 708 (758)
Q Consensus 641 ~-~~~~~~~~---e~-g~p~~~~~~-~~l~~~------sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~ 708 (758)
. ........ .+ +.......+ ...... ++...+.++++| +|++||++|..||+.++.++++++.. .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vLii~G~~D~~vp~~~~~~l~~~i~~--~ 229 (305)
T 1tht_A 153 YLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVP-LIAFTANNDDWVKQEEVYDMLAHIRT--G 229 (305)
T ss_dssp GGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSC-EEEEEETTCTTSCHHHHHHHHTTCTT--C
T ss_pred hhhcchhhCcccccccccccCHHHHHHHHHhccccchhhHHHHHhhcCCC-EEEEEeCCCCccCHHHHHHHHHhcCC--C
Confidence 0 00000000 00 000001111 111111 123346677898 99999999999999888877765532 2
Q ss_pred CCceEEEEecCCCCCCCC
Q 004368 709 DDNILLFKCELGAGHFSK 726 (758)
Q Consensus 709 ~~~~~~~~~~~~~gH~~~ 726 (758)
..++++++ ++||...
T Consensus 230 ~~~l~~i~---~agH~~~ 244 (305)
T 1tht_A 230 HCKLYSLL---GSSHDLG 244 (305)
T ss_dssp CEEEEEET---TCCSCTT
T ss_pred CcEEEEeC---CCCCchh
Confidence 34566665 9999875
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-14 Score=156.57 Aligned_cols=203 Identities=10% Similarity=0.034 Sum_probs=144.8
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+..++|||||++|||+...+| ..+|+++|+++|+..... ..+....++||||| .|+|+...+ ...+||++++.+
T Consensus 181 v~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~--g~~~i~~~d~~~ 256 (415)
T 2hqs_A 181 LMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT--GSLNLYVMDLAS 256 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTT
T ss_pred ceeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecC--CCceEEEEECCC
Confidence 668899999999999987665 368999999999876542 33345679999999 788887543 234699999987
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce-eeEEeecCCEEEEEEcC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~ 349 (758)
+. ...+. .. ......+.|||||++|++.+...+...||++|+.+++ .+.++...... ...|+|||+.|++.+..
T Consensus 257 ~~--~~~l~-~~-~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 257 GQ--IRQVT-DG-RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSN 331 (415)
T ss_dssp CC--EEECC-CC-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred CC--EEeCc-CC-CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-EEEEecCCCcccCeEECCCCCEEEEEECc
Confidence 63 22232 22 2334578899999999998876667799999998876 66655433222 34599999999998876
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
++ ...|+.+++++. ....+.... ......++++++.|++....++...|++++++
T Consensus 332 ~g--~~~i~~~d~~~~-~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 332 GG--QQHIAKQDLATG-GVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp SS--CEEEEEEETTTC-CEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CC--ceEEEEEECCCC-CEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 42 578999999763 333343332 22223344456678888888887789999887
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=154.89 Aligned_cols=185 Identities=16% Similarity=0.180 Sum_probs=128.1
Q ss_pred EEEEeecccccc-CCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHH
Q 004368 501 ICIVYRKNLVKL-DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF 579 (758)
Q Consensus 501 ~~l~~p~~~~~~-~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~ 579 (758)
+.+++|+.. .. +++.|+||++||+.+.. ..|......|+++||.|+.+|+||++. ..|+
T Consensus 34 ~~~~~p~~~-~~~g~~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~~s~~-----------------~~~~ 93 (258)
T 2fx5_A 34 CRIYRPRDL-GQGGVRHPVILWGNGTGAGP--STYAGLLSHWASHGFVVAAAETSNAGT-----------------GREM 93 (258)
T ss_dssp EEEEEESST-TGGGCCEEEEEEECCTTCCG--GGGHHHHHHHHHHTCEEEEECCSCCTT-----------------SHHH
T ss_pred EEEEeCCCC-cccCCCceEEEEECCCCCCc--hhHHHHHHHHHhCCeEEEEecCCCCcc-----------------HHHH
Confidence 667888753 22 23789999999976532 446666778889999999999996411 1456
Q ss_pred HHHHHHHHHc---------CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhc
Q 004368 580 IACAEYLIKN---------CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEE 650 (758)
Q Consensus 580 ~~~~~~l~~~---------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e 650 (758)
..+++++.+. ..++.++++++|+|+||++++.++ .+++++++|+..|.... .+.
T Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~--------~~~------- 156 (258)
T 2fx5_A 94 LACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLG--------LGH------- 156 (258)
T ss_dssp HHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSS--------TTC-------
T ss_pred HHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCcccc--------ccc-------
Confidence 6666666542 346778999999999999998877 35789999987764320 000
Q ss_pred cCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChH-HHHHHHHHHhcCCCCceEEEEecCCCCCCCCCCh
Q 004368 651 WGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSE-PAKFVAKLREMKTDDNILLFKCELGAGHFSKSGR 729 (758)
Q Consensus 651 ~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~ 729 (758)
. ...+.+++.| +|++||++|..+++.. +.+++++ .+.+.++++++ ++||......
T Consensus 157 -----~------------~~~~~~i~~P-~lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~---g~~H~~~~~~ 212 (258)
T 2fx5_A 157 -----D------------SASQRRQQGP-MFLMSGGGDTIAFPYLNAQPVYRR---ANVPVFWGERR---YVSHFEPVGS 212 (258)
T ss_dssp -----C------------GGGGGCCSSC-EEEEEETTCSSSCHHHHTHHHHHH---CSSCEEEEEES---SCCTTSSTTT
T ss_pred -----c------------hhhhccCCCC-EEEEEcCCCcccCchhhHHHHHhc---cCCCeEEEEEC---CCCCccccch
Confidence 0 1123445677 9999999999999886 7777766 33456666665 8999876443
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 004368 730 FERLREAAFTYTFLMRALS 748 (758)
Q Consensus 730 ~~~~~~~~~~~~fl~~~l~ 748 (758)
...+.+ .+.+||.++|.
T Consensus 213 ~~~~~~--~i~~fl~~~l~ 229 (258)
T 2fx5_A 213 GGAYRG--PSTAWFRFQLM 229 (258)
T ss_dssp CGGGHH--HHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHhc
Confidence 333333 36789998874
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=165.94 Aligned_cols=208 Identities=14% Similarity=0.185 Sum_probs=137.0
Q ss_pred CeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCch--------------
Q 004368 496 GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR-------------- 561 (758)
Q Consensus 496 G~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~-------------- 561 (758)
...+|+....|.. .+++.|+||++||+.+.. ..|...+..|+++||+|+.+|+||+|....
T Consensus 81 ~~~~p~~~~~P~~---~~~~~P~Vv~~HG~~~~~--~~~~~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~ 155 (383)
T 3d59_A 81 SMTTPANWNSPLR---PGEKYPLVVFSHGLGAFR--TLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDK 155 (383)
T ss_dssp TCEESSEETCCBC---CSSCEEEEEEECCTTCCT--TTTHHHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCC
T ss_pred ceeeccccCCCcc---cCCCCCEEEEcCCCCCCc--hHHHHHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCc
Confidence 4455554333322 235789999999975543 346777889999999999999999876421
Q ss_pred hHHhccc----------ccCCcChHhHHHHHHHHHHH--------------------cCCCCCCcEEEEEeChhHHHHHH
Q 004368 562 QWYENGK----------FLKKKNTFTDFIACAEYLIK--------------------NCYCTKEKLCIEGRSAGGLLIGA 611 (758)
Q Consensus 562 ~~~~~~~----------~~~~~~~~~D~~~~~~~l~~--------------------~~~~d~~~i~i~G~S~GG~l~~~ 611 (758)
.|..... ...-....+|+.+++++|.+ .+.+|++||+++|+|+||.+++.
T Consensus 156 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~ 235 (383)
T 3d59_A 156 SWLYLRTLKQEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQ 235 (383)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHH
T ss_pred eeeeccccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHH
Confidence 1110000 00001124688899999876 56678899999999999999999
Q ss_pred HHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCC
Q 004368 612 VLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRV 691 (758)
Q Consensus 612 ~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V 691 (758)
++.+.| +++|+|+..|... +. ..+ ...+++.| +|++||++|..+
T Consensus 236 ~a~~~~-~v~a~v~~~~~~~----------p~------------~~~------------~~~~i~~P-~Lii~g~~D~~~ 279 (383)
T 3d59_A 236 TLSEDQ-RFRCGIALDAWMF----------PL------------GDE------------VYSRIPQP-LFFINSEYFQYP 279 (383)
T ss_dssp HHHHCT-TCCEEEEESCCCT----------TC------------CGG------------GGGSCCSC-EEEEEETTTCCH
T ss_pred HHhhCC-CccEEEEeCCccC----------CC------------chh------------hhccCCCC-EEEEecccccch
Confidence 988765 6999998887421 11 000 01234567 999999999743
Q ss_pred CChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCC--------------------ChHHHHHHH-HHHHHHHHHhcCCC
Q 004368 692 MYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS--------------------GRFERLREA-AFTYTFLMRALSML 750 (758)
Q Consensus 692 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--------------------~~~~~~~~~-~~~~~fl~~~l~~~ 750 (758)
+..+..++|.+.+.+.++++++ +++|.... +.....+.. ..+.+||.++|+..
T Consensus 280 ---~~~~~~~~l~~~~~~~~~~~~~---g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L~~~ 353 (383)
T 3d59_A 280 ---ANIIKMKKCYSPDKERKMITIR---GSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHLGLH 353 (383)
T ss_dssp ---HHHHHHHTTCCTTSCEEEEEET---TCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ---hhHHHHHHHHhcCCceEEEEeC---CCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHcCCc
Confidence 2334446666666677777776 99997521 222222222 24789999999765
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-16 Score=152.34 Aligned_cols=189 Identities=14% Similarity=0.072 Sum_probs=117.8
Q ss_pred CCEEEEecCCCccCCCCCCC--hHHHHHHHc--CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCC
Q 004368 516 DPLLLYGYGSYEICNDPAFN--SSRLSLLDR--GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~--~~~~~l~~~--G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 591 (758)
.|+|||+|| ++++. .++. .....+.++ ||.|+.+|++|+|+ |..+.++.++.+
T Consensus 2 mptIl~lHG-f~ss~-~s~k~~~l~~~~~~~~~~~~v~~pdl~~~g~-------------------~~~~~l~~~~~~-- 58 (202)
T 4fle_A 2 MSTLLYIHG-FNSSP-SSAKATTFKSWLQQHHPHIEMQIPQLPPYPA-------------------EAAEMLESIVMD-- 58 (202)
T ss_dssp -CEEEEECC-TTCCT-TCHHHHHHHHHHHHHCTTSEEECCCCCSSHH-------------------HHHHHHHHHHHH--
T ss_pred CcEEEEeCC-CCCCC-CccHHHHHHHHHHHcCCCcEEEEeCCCCCHH-------------------HHHHHHHHHHHh--
Confidence 489999999 33221 1221 122344554 59999999998752 223333333332
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCC--CCHHHHHHHHhcCcc
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP--WKEEFYFYMKSYSPV 669 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p--~~~~~~~~l~~~sp~ 669 (758)
.+.++|+|+|+|+||++++.++.++|+...+++..++..+........... ...+.+ ........ ..+..
T Consensus 59 ~~~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~~ 130 (202)
T 4fle_A 59 KAGQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQN------PYTGQKYVLESRHIYD--LKAMQ 130 (202)
T ss_dssp HTTSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEEC------TTTCCEEEECHHHHHH--HHTTC
T ss_pred cCCCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhcc------ccccccccchHHHHHH--HHhhh
Confidence 245899999999999999999999999888888777765544322110000 001111 12222222 22445
Q ss_pred cccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 670 DNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 670 ~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
..+.+.+.| +||+||++|.+||+.++.+++. +.++++++ ++||.+. +..+.+++ +.+||.-..++
T Consensus 131 ~~~~~~~~P-~LiihG~~D~~Vp~~~s~~l~~-------~~~l~i~~---g~~H~~~-~~~~~~~~---I~~FL~~a~~l 195 (202)
T 4fle_A 131 IEKLESPDL-LWLLQQTGDEVLDYRQAVAYYT-------PCRQTVES---GGNHAFV-GFDHYFSP---IVTFLGLATAL 195 (202)
T ss_dssp CSSCSCGGG-EEEEEETTCSSSCHHHHHHHTT-------TSEEEEES---SCCTTCT-TGGGGHHH---HHHHHTCCCCT
T ss_pred hhhhccCce-EEEEEeCCCCCCCHHHHHHHhh-------CCEEEEEC---CCCcCCC-CHHHHHHH---HHHHHhhhhhc
Confidence 556667787 9999999999999999988763 34667775 9999764 22333333 57888765555
Q ss_pred C
Q 004368 750 L 750 (758)
Q Consensus 750 ~ 750 (758)
+
T Consensus 196 ~ 196 (202)
T 4fle_A 196 E 196 (202)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-15 Score=152.66 Aligned_cols=222 Identities=20% Similarity=0.225 Sum_probs=129.5
Q ss_pred eeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccccc
Q 004368 491 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 570 (758)
Q Consensus 491 ~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~ 570 (758)
+++.||.+|..... ++.|.||++||..+.. ..|...+..|+++||.|+.+|+||+|.+...+
T Consensus 3 ~~~~~g~~l~y~~~---------G~g~~vvllHG~~~~~--~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~------- 64 (271)
T 3ia2_A 3 FVAKDGTQIYFKDW---------GSGKPVLFSHGWLLDA--DMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPW------- 64 (271)
T ss_dssp EECTTSCEEEEEEE---------SSSSEEEEECCTTCCG--GGGHHHHHHHHTTTCEEEEECCTTSTTSCCCS-------
T ss_pred EEcCCCCEEEEEcc---------CCCCeEEEECCCCCcH--HHHHHHHHHHHhCCceEEEecCCCCccCCCCC-------
Confidence 56789988754321 2346788999965543 34666677888899999999999999765321
Q ss_pred CCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhh-CCCceeEEEEcCCccchhhccCCCCCCC--Chh-
Q 004368 571 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM-RPDLFKAAVAAVPFVDVLTTMLDPTIPL--TTA- 646 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~~~~d~~~~~~~~~~~~--~~~- 646 (758)
...+++++.+.+..+++. .+.+++.++|+|+||++++.++++ .|++++++|+.++........ ...+. ...
T Consensus 65 -~~~~~~~~a~d~~~~l~~--l~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~--~~~~~~~~~~~ 139 (271)
T 3ia2_A 65 -TGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQK--PDYPQGVPLDV 139 (271)
T ss_dssp -SCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCB--TTBTTSBCHHH
T ss_pred -CCCCHHHHHHHHHHHHHH--hCCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCC--CCCcccccHHH
Confidence 123344544444444332 134789999999999866655554 589999999887643211100 00000 000
Q ss_pred -------------hh-h----c-c----CCCCCHHH-------------------HHHHHhcCcccccCCCCCCeEEEec
Q 004368 647 -------------EW-E----E-W----GDPWKEEF-------------------YFYMKSYSPVDNVKAQNYPHILVTA 684 (758)
Q Consensus 647 -------------~~-~----e-~----g~p~~~~~-------------------~~~l~~~sp~~~i~~~~~P~~Li~~ 684 (758)
.+ . . + +....+.. +..+...+....+.++++| +||+|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~Lvi~ 218 (271)
T 3ia2_A 140 FARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVP-TLVIH 218 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHTTCCSC-EEEEE
T ss_pred HHHHHHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccccCCCCC-EEEEE
Confidence 00 0 0 0 11111110 0111112223345677898 99999
Q ss_pred cCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 685 GLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 685 G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
|++|..||+.++.++++++.. ..++++++ ++||.......+.+.+ .+.+||.
T Consensus 219 G~~D~~~p~~~~~~~~~~~~~---~~~~~~~~---~~gH~~~~e~p~~~~~--~i~~Fl~ 270 (271)
T 3ia2_A 219 GDGDQIVPFETTGKVAAELIK---GAELKVYK---DAPHGFAVTHAQQLNE--DLLAFLK 270 (271)
T ss_dssp ETTCSSSCGGGTHHHHHHHST---TCEEEEET---TCCTTHHHHTHHHHHH--HHHHHHT
T ss_pred eCCCCcCChHHHHHHHHHhCC---CceEEEEc---CCCCcccccCHHHHHH--HHHHHhh
Confidence 999999999886666665532 34667776 9999754333333332 2456663
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=156.91 Aligned_cols=223 Identities=11% Similarity=0.057 Sum_probs=138.3
Q ss_pred eeEEEEeeCCC-CeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHH-cCcEEEEEecCCCCCC---
Q 004368 485 FTERKWASASD-GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGEL--- 559 (758)
Q Consensus 485 ~~~~~~~~s~d-G~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~--- 559 (758)
..+.+.+.|.+ |.++.++++.|++. .+++++|+|++.||+...... .......+++ .+.+|+.++++++..+
T Consensus 12 ~~~~~~~~S~~~~~~~~~~vylP~~y-~~~~~yPvly~l~G~~~~~~~--~~~~~~~l~~~~~~ivV~v~~~~~~~~~~~ 88 (278)
T 2gzs_A 12 HFSATSFDSVDGTRHYRVWTAVPNTT-APASGYPILYMLDGNAVMDRL--DDELLKQLSEKTPPVIVAVGYQTNLPFDLN 88 (278)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEESSC-CCTTCEEEEEESSHHHHHHHC--CHHHHHHHTTSCCCEEEEEEESSSSSCCHH
T ss_pred ceEEEEEEcCCCCceEEEEEECCCCC-CCCCCCCEEEEeeChhHHHHH--HHHHHHHhccCCCeEEEEEcCCCCCcCccc
Confidence 45777888876 68899999999987 666789998777775432111 1122345555 6888888888764321
Q ss_pred --chhHHhcc-------------cccCCcChHhHHHH--HHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeE
Q 004368 560 --GRQWYENG-------------KFLKKKNTFTDFIA--CAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKA 622 (758)
Q Consensus 560 --G~~~~~~~-------------~~~~~~~~~~D~~~--~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a 622 (758)
+.++.... ....+...+.+++. .+.++.++..+|++|++|+|+|+||++++.++.+ |++|++
T Consensus 89 ~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~~-p~~f~~ 167 (278)
T 2gzs_A 89 SRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRS 167 (278)
T ss_dssp HHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSE
T ss_pred ccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHhC-ccccCe
Confidence 11111100 00011122333331 2334445556889999999999999999999999 999999
Q ss_pred EEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCC--------CCh
Q 004368 623 AVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRV--------MYS 694 (758)
Q Consensus 623 ~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V--------~~~ 694 (758)
+++.+|.+.+.. ...+..+..+.+. ....+++++.||+.|..+ +..
T Consensus 168 ~~~~s~~~~~~~----------------------~~~~~~~~~~~~~----~~~~~~i~l~~G~~d~~~~~~~~~~~~~~ 221 (278)
T 2gzs_A 168 YYSASPSLGRGY----------------------DALLSRVTAVEPL----QFCTKHLAIMEGSATQGDNRETHAVGVLS 221 (278)
T ss_dssp EEEESGGGSTTH----------------------HHHHHHHHTSCTT----TTTTCEEEEEECCC-----------CHHH
T ss_pred EEEeCcchhcCc----------------------chHHHHHHHhhcc----CCCCCcEEEEecCccccccccchhhhhHH
Confidence 999998643211 0111122222211 112345999999999875 478
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 695 EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 695 ~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
++++++++|++.|.++++..++ +++|.. ..+....+.+.||.+
T Consensus 222 ~~~~~~~~L~~~g~~~~~~~~~---g~~H~~-----~~~~~~~~~l~fl~~ 264 (278)
T 2gzs_A 222 KIHTTLTILKDKGVNAVFWDFP---NLGHGP-----MFNASFRQALLDISG 264 (278)
T ss_dssp HHHHHHHHHHHTTCCEEEEECT---TCCHHH-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCeeEEEEcC---CCCccc-----hhHHHHHHHHHHHhh
Confidence 9999999999999877665554 888952 233334445677764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.2e-14 Score=150.86 Aligned_cols=254 Identities=13% Similarity=0.048 Sum_probs=160.1
Q ss_pred EEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC-c-ceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-V-TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 196 ~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-~-~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
++|||||++|||..+.+| ..+||++|+++|+..+++... . ...+.||||| .|+|...+ ..|+++++.++.
T Consensus 41 ~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~d~~~g~ 113 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDG--PWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG-----RNLMRVDLATLE 113 (388)
T ss_dssp CCBCTTSCEEEEEECTTS--SCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT-----TEEEEEETTTCC
T ss_pred ccCCCCCCEEEEEEcCCC--CceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Confidence 789999999999998666 368999999999987753222 2 2257999999 78888743 369999998873
Q ss_pred CCcEEEeeecCCceee--EEEEcCCCcEEEEEec-------------------CCcceEEEEEeCCCCCceEEeeccccc
Q 004368 273 SNDICLYHEKDDIYSL--GLQASESKKFLFIASE-------------------SKITRFVFYLDVSKPEELRVLTPRVVG 331 (758)
Q Consensus 273 ~~~~~v~~~~~~~~~~--~~~~S~Dg~~l~~~s~-------------------~~~~~~l~~~d~~~~~~~~~l~~~~~~ 331 (758)
...++..+. .+.. ....++||+.++.... ......||++|+++++ .+.++.....
T Consensus 114 --~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~ 189 (388)
T 3pe7_A 114 --ENVVYQVPA-EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-STVILQENQW 189 (388)
T ss_dssp --EEEEEECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-EEEEEEESSC
T ss_pred --ceeeeechh-hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-eEEeecCCcc
Confidence 344544332 2221 2235899999875431 1123789999999887 6666654333
Q ss_pred e-eeEEee-cCCEEEEEEcCCC-CCCcEEEEEeCCCCCcceeeecCCCCceee--eEEEeCCEEEEEEEeCCeeE--EEE
Q 004368 332 V-DTAASH-RGNHFFITRRSDE-LFNSELLACPVDNTSETTVLIPHRESVKLQ--DIQLFIDHLAVYEREGGLQK--ITT 404 (758)
Q Consensus 332 ~-~~~~s~-dg~~l~~~s~~~~-~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~--l~v 404 (758)
. ...|+| ||++|++.++... ....+|+.+++++ .....+........+. .++++++.|++....++... |++
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-TNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-CCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-CceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence 3 345999 9999999887431 1246899999875 2333344433222233 34556677877777766554 788
Q ss_pred EEcCCCCCccccccCCceeeccCcc---cccCCCCcccCCcEEEEEEec-----CCCCCEEEEEECCCCcEE
Q 004368 405 YRLPAVGEPLKSLQGGKSVEFIDPV---YSIDPSESVFSSRILRFHYSS-----LRTPPSVYDYDMDMGISV 468 (758)
Q Consensus 405 ~~l~~~g~~~~~l~~~~~i~~p~~~---~~i~~~~~~~d~~~l~~~~sS-----~~~P~~i~~~d~~~~~~~ 468 (758)
+++. ++..+.+ ..++... ....+..+++|++.+.++... ......||.+|+.+++.+
T Consensus 269 ~d~~--~g~~~~l-----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (388)
T 3pe7_A 269 ADPE--TLENRQL-----TSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH 333 (388)
T ss_dssp ECTT--TCCEEEE-----EEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE
T ss_pred EecC--CCceEEE-----EcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence 8776 3322111 1122200 012234577888888776542 245678999999998744
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=160.66 Aligned_cols=253 Identities=15% Similarity=0.155 Sum_probs=147.5
Q ss_pred EEEEeeCCCCeEEEEEEEeecccccc-CCCCCEEEEecCCCccCCC----------CC-CChHH---HHHHHcCcEEEEE
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKL-DGSDPLLLYGYGSYEICND----------PA-FNSSR---LSLLDRGFIFAIA 551 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~-~~~~P~vl~~hGg~~~~~~----------~~-~~~~~---~~l~~~G~~v~~~ 551 (758)
+.-.++..+|..|...|.|..-. .. ..+.|+||++||..+.... .. |...+ ..|+.+||.|+.+
T Consensus 13 ~~~~~~~~~g~~l~~~i~y~~~g-~~~~~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~ 91 (377)
T 3i1i_A 13 ILKEYTFENGRTIPVQMGYETYG-TLNRERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICT 91 (377)
T ss_dssp EEEEEECTTSCEEEEEEEEEEES-CCCTTCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEE
T ss_pred eecceeecCCCEeeeeEEEEeec-ccCCCCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEe
Confidence 33456677887774445444322 11 2346999999997665433 11 33333 4667789999999
Q ss_pred ecCCCCCC--------chhHHhc--cc---ccCCcChHhHHHHHHHHHHHcCCCCCCcEE-EEEeChhHHHHHHHHhhCC
Q 004368 552 QIRGGGEL--------GRQWYEN--GK---FLKKKNTFTDFIACAEYLIKNCYCTKEKLC-IEGRSAGGLLIGAVLNMRP 617 (758)
Q Consensus 552 ~~RG~g~~--------G~~~~~~--~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p 617 (758)
|+||+|.+ |..-... +. ......+++|+.+.+..+++. .+.+++. ++|+|+||.+++.++.++|
T Consensus 92 D~~G~G~S~G~~~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l~~--l~~~~~~ilvGhS~Gg~ia~~~a~~~p 169 (377)
T 3i1i_A 92 DNLCNVQVKNPHVITTGPKSINPKTGDEYAMDFPVFTFLDVARMQCELIKD--MGIARLHAVMGPSAGGMIAQQWAVHYP 169 (377)
T ss_dssp CCTTCSCTTSTTCCCCSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCCCBSEEEEETHHHHHHHHHHHHCT
T ss_pred cccccccccCCCcccCCCCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHH--cCCCcEeeEEeeCHhHHHHHHHHHHCh
Confidence 99988541 1100000 00 001134778888888777765 2346785 9999999999999999999
Q ss_pred CceeEEEE-cCCccchhh------------ccCCC---------CCC---------------CChhhh-hccCC------
Q 004368 618 DLFKAAVA-AVPFVDVLT------------TMLDP---------TIP---------------LTTAEW-EEWGD------ 653 (758)
Q Consensus 618 ~~f~a~v~-~~~~~d~~~------------~~~~~---------~~~---------------~~~~~~-~e~g~------ 653 (758)
++++++|+ .++...... ...++ ..| .....+ ..++.
T Consensus 170 ~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (377)
T 3i1i_A 170 HMVERMIGVITNPQNPIITSVNVAQNAIEAIRLDPSWKGGKYGEEQPMKGLQLANRMMFMNAFDEHFYETTYPRNSIEVE 249 (377)
T ss_dssp TTBSEEEEESCCSBCCHHHHHHTTHHHHHHHHHSGGGGGGCCTTSCCHHHHHHHHHHHHTTSSCHHHHHHHSCCCSSCCG
T ss_pred HHHHHhcccCcCCCcCCchhhHHHHHHHHHHhcCCCccCCccccCCccchHHHHHHHHhhhcCCHHHHHHHhhhhhcccc
Confidence 99999998 554332000 00000 000 000000 00111
Q ss_pred ------------------------CCCHHHHHH----HHhcCc-------ccccCCCCCCeEEEeccCCCCCCCChHHHH
Q 004368 654 ------------------------PWKEEFYFY----MKSYSP-------VDNVKAQNYPHILVTAGLNDPRVMYSEPAK 698 (758)
Q Consensus 654 ------------------------p~~~~~~~~----l~~~sp-------~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~ 698 (758)
..+...+.. +..+++ ...+.++++| +||++|++|..+|+..+.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vlii~G~~D~~~~~~~~~~ 328 (377)
T 3i1i_A 250 PYEKVSSLTSFEKEINKLTYRSIELVDANSWMYTAKAVLLHDIAHGFSSLEEALSNVEAN-VLMIPCKQDLLQPSRYNYK 328 (377)
T ss_dssp GGTCTTCCCHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHCBTTTTSSCHHHHHHTCCSE-EEEECBTTCSSSCTHHHHH
T ss_pred ccccccchhHHHHHHHHHHhhhhcccCHHHHHHHHHHHhhcccccccCCHHHHHhhCCCC-EEEEecCCccccCHHHHHH
Confidence 011111111 111111 2344567888 9999999999999999999
Q ss_pred HHHHHHhcCCCCceEEEEecCC-CCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 699 FVAKLREMKTDDNILLFKCELG-AGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 699 ~~~~L~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
+++.++..+...++++++ + +||.......+.+.+ .+.+||.+++.
T Consensus 329 ~~~~~~~~g~~~~~~~i~---~~~gH~~~~e~p~~~~~--~i~~fl~~~~~ 374 (377)
T 3i1i_A 329 MVDLLQKQGKYAEVYEIE---SINGHMAGVFDIHLFEK--KVYEFLNRKVS 374 (377)
T ss_dssp HHHHHHHTTCCEEECCBC---CTTGGGHHHHCGGGTHH--HHHHHHHSCCS
T ss_pred HHHHHHhcCCCceEEEcC---CCCCCcchhcCHHHHHH--HHHHHHHhhhh
Confidence 999998776555555554 6 899643222222222 25688887653
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-14 Score=148.29 Aligned_cols=228 Identities=11% Similarity=0.065 Sum_probs=135.5
Q ss_pred eCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCC-CCCh-HHHHHHHcCcEEEEEecCCCCCCchhHHhcccc
Q 004368 492 SASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNS-SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 569 (758)
Q Consensus 492 ~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~-~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~ 569 (758)
+..+|.++ .++.|++ ++.|+||++|||....... .+.. ....+++.|+.|+.+|||+.++.. |
T Consensus 10 ~~~~~~~~--~~y~p~~-----~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~~--~------ 74 (274)
T 2qru_A 10 TLANGATV--TIYPTTT-----EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNTK--I------ 74 (274)
T ss_dssp ECTTSCEE--EEECCSS-----SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTSC--H------
T ss_pred cccCCeeE--EEEcCCC-----CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCCC--C------
Confidence 34466544 5454431 4579999999986433322 2433 334566779999999999877542 1
Q ss_pred cCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHh---hCCCceeEEEEcCCccchhhccCCC--CCCCC
Q 004368 570 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN---MRPDLFKAAVAAVPFVDVLTTMLDP--TIPLT 644 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~---~~p~~f~a~v~~~~~~d~~~~~~~~--~~~~~ 644 (758)
+..++|+.++++||.++.. ++++|+|+|+|+||.+++.++. ..|...+++++.+|+.|........ ..+..
T Consensus 75 ---p~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~ 150 (274)
T 2qru_A 75 ---DHILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKLLKQAI 150 (274)
T ss_dssp ---HHHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCSCSSCC
T ss_pred ---cHHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhhccccc
Confidence 2457999999999988753 2789999999999999998887 3577889999988887721100000 01110
Q ss_pred hhhh-hcc-C-CC-----CCH--HH---------HHHHHhc-Cc----ccccCC---CCCCeEEEeccCCCCCCCChHHH
Q 004368 645 TAEW-EEW-G-DP-----WKE--EF---------YFYMKSY-SP----VDNVKA---QNYPHILVTAGLNDPRVMYSEPA 697 (758)
Q Consensus 645 ~~~~-~e~-g-~p-----~~~--~~---------~~~l~~~-sp----~~~i~~---~~~P~~Li~~G~~D~~V~~~~~~ 697 (758)
.... ... . .+ ... .. +..+... .. ...+.. .+.||+||++|++|+.++..+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lpP~li~~G~~D~~~~~~~~~ 230 (274)
T 2qru_A 151 SAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKTFPPCFSTASSSDEEVPFRYSK 230 (274)
T ss_dssp CSGGGTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHTSCCEEEEEETTCSSSCTHHHH
T ss_pred cHHHHhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChhhhcCCCCEEEEEecCCCCcCHHHHH
Confidence 0000 000 0 00 000 00 0000000 00 001111 14577999999999999988887
Q ss_pred HHHHHHHhcCCCCceEEEEecCCCCCCCCCC--hHHHHHHHHHHHHHHHH
Q 004368 698 KFVAKLREMKTDDNILLFKCELGAGHFSKSG--RFERLREAAFTYTFLMR 745 (758)
Q Consensus 698 ~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~~fl~~ 745 (758)
++++++. ++++++++ +.+|++... .....+....+.+||.+
T Consensus 231 ~l~~~~~----~~~l~~~~---g~~H~~~~~~~~~~~~~~~~~~~~fl~~ 273 (274)
T 2qru_A 231 KIGRTIP----ESTFKAVY---YLEHDFLKQTKDPSVITLFEQLDSWLKE 273 (274)
T ss_dssp HHHHHST----TCEEEEEC---SCCSCGGGGTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHhCC----CcEEEEcC---CCCcCCccCcCCHHHHHHHHHHHHHHhh
Confidence 7776654 45677776 899986321 12222234446778764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-13 Score=147.74 Aligned_cols=245 Identities=11% Similarity=0.070 Sum_probs=163.7
Q ss_pred CCCCEEEEEEeCCCCe-EEEEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcE
Q 004368 200 PDNKLVAYAEDTKGDE-IYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDI 276 (758)
Q Consensus 200 PDG~~lAy~~~~~G~e-~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~ 276 (758)
+.+++|||+....+++ ..+|+++|++++....+. -......++||||| .|+|.+.+.. ...|+++++.++. ..
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~--~~ 216 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGA--VR 216 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCC--EE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCc--EE
Confidence 5589999998765432 279999999877655442 23345669999999 7888876532 3579999998763 23
Q ss_pred EEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce-eeEEeecCCEEEEEEcCCCCCCc
Q 004368 277 CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSDELFNS 355 (758)
Q Consensus 277 ~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~ 355 (758)
.+... ......+.|||||++|++.....+...||++|+.+++ .+.++...... ...|+|||++|++.++.++ ..
T Consensus 217 ~l~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g--~~ 291 (415)
T 2hqs_A 217 QVASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG--RP 291 (415)
T ss_dssp EEECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTS--SC
T ss_pred EeecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-EEeCcCCCCcccceEECCCCCEEEEEECCCC--Cc
Confidence 33322 2234578999999999988776667889999999886 66666544333 3459999999999987652 46
Q ss_pred EEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCC
Q 004368 356 ELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPS 435 (758)
Q Consensus 356 ~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~ 435 (758)
+|+.+++.+. ....+........-..++++++.|++....++...++++++.. +... .+.... .+..+
T Consensus 292 ~i~~~d~~~~-~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~--~~~~--------~l~~~~-~~~~~ 359 (415)
T 2hqs_A 292 QVYKVNINGG-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--GGVQ--------VLSSTF-LDETP 359 (415)
T ss_dssp EEEEEETTSS-CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT--CCEE--------ECCCSS-SCEEE
T ss_pred EEEEEECCCC-CEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC--CCEE--------EecCCC-CcCCe
Confidence 8999998763 3333433322222234445667888887777777899998873 3221 111111 23345
Q ss_pred CcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 436 ESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 436 ~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.+++++..+++.... .....+|.+|+.++.
T Consensus 360 ~~spdg~~l~~~s~~-~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 360 SLAPNGTMVIYSSSQ-GMGSVLNLVSTDGRF 389 (415)
T ss_dssp EECTTSSEEEEEEEE-TTEEEEEEEETTSCC
T ss_pred EEcCCCCEEEEEEcC-CCccEEEEEECCCCc
Confidence 677888877665432 334589999987665
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=162.01 Aligned_cols=224 Identities=15% Similarity=0.088 Sum_probs=144.5
Q ss_pred eeEEEEeeCC-CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcE----EEEEecCCCCCC
Q 004368 485 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFI----FAIAQIRGGGEL 559 (758)
Q Consensus 485 ~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~----v~~~~~RG~g~~ 559 (758)
.++.+.+.|. .|..++++++.|++. . ++++|+|+++||+...... .+......|+++|++ |+.+|++|+...
T Consensus 167 ~v~~~~~~S~~~g~~~~~~vy~P~~~-~-~~~~PvlvllHG~~~~~~~-~~~~~~~~l~~~g~~~p~iVV~~d~~~~~~r 243 (403)
T 3c8d_A 167 PAKEIIWKSERLKNSRRVWIFTTGDV-T-AEERPLAVLLDGEFWAQSM-PVWPVLTSLTHRQQLPPAVYVLIDAIDTTHR 243 (403)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEC-------CCCCEEEESSHHHHHHTS-CCHHHHHHHHHTTSSCSCEEEEECCCSHHHH
T ss_pred ceEEEEEEccccCCcEEEEEEeCCCC-C-CCCCCEEEEeCCHHHhhcC-cHHHHHHHHHHcCCCCCeEEEEECCCCCccc
Confidence 4566777664 678899998888875 3 4679999999995432221 233456788888875 999998863211
Q ss_pred chhHHhcccccCCcChHhHHH--HHHHHHHHcC--CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhc
Q 004368 560 GRQWYENGKFLKKKNTFTDFI--ACAEYLIKNC--YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 635 (758)
Q Consensus 560 G~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~~--~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~ 635 (758)
.. + ......+.|++ +++.++.++. ..|+++++|+|+|+||++++.++.++|++|+++++.+|.+++...
T Consensus 244 ~~---~----~~~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg~~~~~~~ 316 (403)
T 3c8d_A 244 AH---E----LPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHR 316 (403)
T ss_dssp HH---H----SSSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCT
T ss_pred cc---c----CCChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEeccccccCCC
Confidence 11 1 01122344443 4666766643 358899999999999999999999999999999999998754321
Q ss_pred cCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEE
Q 004368 636 MLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 715 (758)
Q Consensus 636 ~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 715 (758)
+++.+....+.+.. .+ ...... +++|+||..|..+ +.++++|+++|+++|.++++..+
T Consensus 317 ----------------~~~~~~~~~~~~~~-~~---~~~~~~-~i~l~~G~~D~~~-~~~~~~l~~~L~~~G~~v~~~~~ 374 (403)
T 3c8d_A 317 ----------------GGQQEGVLLEKLKA-GE---VSAEGL-RIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQV 374 (403)
T ss_dssp ----------------TSSSCCHHHHHHHT-TS---SCCCSC-EEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEE
T ss_pred ----------------CCCcHHHHHHHHHh-cc---ccCCCc-eEEEEeeCCCchh-HHHHHHHHHHHHhCCCCEEEEEe
Confidence 00111112222222 11 122234 5999999998754 67999999999999988877777
Q ss_pred EecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 716 KCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 716 ~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
+ + ||.. ...-..+.+.+.||.+.+.
T Consensus 375 ~---G-gH~~----~~w~~~l~~~l~~l~~~~~ 399 (403)
T 3c8d_A 375 D---G-GHDA----LCWRGGLMQGLIDLWQPLF 399 (403)
T ss_dssp S---C-CSCH----HHHHHHHHHHHHHHHGGGT
T ss_pred C---C-CCCH----HHHHHHHHHHHHHHhcccc
Confidence 5 6 6852 2222334556778876543
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.2e-15 Score=155.16 Aligned_cols=202 Identities=13% Similarity=0.073 Sum_probs=132.0
Q ss_pred EEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCC-------hHHHHHHHcCcEEEEEecCCCCCCchhHHhcc----
Q 004368 499 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN-------SSRLSLLDRGFIFAIAQIRGGGELGRQWYENG---- 567 (758)
Q Consensus 499 i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~-------~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~---- 567 (758)
+.+.++.|.+. +.|.||++||+..... .|. .....|+++||.|+.+|+||+|..+..-....
T Consensus 50 ~~~~~~~p~~~-----~~~~vvl~HG~g~~~~--~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~~~~ 122 (328)
T 1qlw_A 50 MYVRYQIPQRA-----KRYPITLIHGCCLTGM--TWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKL 122 (328)
T ss_dssp EEEEEEEETTC-----CSSCEEEECCTTCCGG--GGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHT
T ss_pred EEEEEEccCCC-----CCccEEEEeCCCCCCC--ccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCcccccccc
Confidence 44444445432 3467999999754332 344 36778899999999999999987653211100
Q ss_pred ------------------------cc-cCC--c-------ChHhH------------------HHHHHHHHHHcCCCCCC
Q 004368 568 ------------------------KF-LKK--K-------NTFTD------------------FIACAEYLIKNCYCTKE 595 (758)
Q Consensus 568 ------------------------~~-~~~--~-------~~~~D------------------~~~~~~~l~~~~~~d~~ 595 (758)
.. .+. . ..+++ +.+++..++++- +
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~ 198 (328)
T 1qlw_A 123 GKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL----D 198 (328)
T ss_dssp TSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH----T
T ss_pred cccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHHh----C
Confidence 00 000 0 00222 555555555542 3
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCC
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ 675 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~ 675 (758)
++.++|+|+||.+++.++.++|++++++|+..|..- . ++....+..
T Consensus 199 ~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~---------~-------------------------~~~~~~~~~ 244 (328)
T 1qlw_A 199 GTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC---------P-------------------------KPEDVKPLT 244 (328)
T ss_dssp SEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC---------C-------------------------CGGGCGGGT
T ss_pred CceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC---------C-------------------------CHHHHhhcc
Confidence 899999999999999999999999999999887530 0 000001113
Q ss_pred CCCeEEEeccCCCCCCCC-----hHHHHHHHHHHhcCCCCceEEEEecC--CCCCCCCCCh-HHHHHHHHHHHHHHHHhc
Q 004368 676 NYPHILVTAGLNDPRVMY-----SEPAKFVAKLREMKTDDNILLFKCEL--GAGHFSKSGR-FERLREAAFTYTFLMRAL 747 (758)
Q Consensus 676 ~~P~~Li~~G~~D~~V~~-----~~~~~~~~~L~~~~~~~~~~~~~~~~--~~gH~~~~~~-~~~~~~~~~~~~fl~~~l 747 (758)
++| +|++||++|..+|+ .++++++++++++|.+.+++.++... +.+|...... ...+. ..+.+||.+++
T Consensus 245 ~~P-vLii~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~~--~~i~~fl~~~~ 321 (328)
T 1qlw_A 245 SIP-VLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVA--DLILDWIGRNT 321 (328)
T ss_dssp TSC-EEEEECSSCTTCTTTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHH--HHHHHHHHHTC
T ss_pred CCC-EEEEeccCCccccchhhHHHHHHHHHHHHHHhCCCceEEEcCCCCcCCCcccchhccCHHHHH--HHHHHHHHhcc
Confidence 467 99999999999997 88999999999988887777776221 3339765433 33332 23678999886
Q ss_pred C
Q 004368 748 S 748 (758)
Q Consensus 748 ~ 748 (758)
.
T Consensus 322 ~ 322 (328)
T 1qlw_A 322 A 322 (328)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.2e-15 Score=157.46 Aligned_cols=222 Identities=15% Similarity=0.139 Sum_probs=137.7
Q ss_pred CCEEEEecCCCccCCCC-----------CCChHHH---HHHHcCcEEEEEecCC--CCCCchhHHhcc--c---ccCCcC
Q 004368 516 DPLLLYGYGSYEICNDP-----------AFNSSRL---SLLDRGFIFAIAQIRG--GGELGRQWYENG--K---FLKKKN 574 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~-----------~~~~~~~---~l~~~G~~v~~~~~RG--~g~~G~~~~~~~--~---~~~~~~ 574 (758)
.|+||++||..+..... .|...+. .|+++||.|+.+|+|| +|..+..-.... . ......
T Consensus 46 ~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G~~~G~s~~~~~~~~~~~~~~~~~~~~ 125 (366)
T 2pl5_A 46 NNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSSGPLSIHPETSTPYGSRFPFV 125 (366)
T ss_dssp CCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSSSTTSBCTTTSSBCGGGSCCC
T ss_pred CceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCCcccCCCCCCCCCCCCCccccCCCCcc
Confidence 58999999976655421 3444432 4567899999999999 665543100000 0 000124
Q ss_pred hHhHHHHHHHHHHHcCCCCCCcE-EEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhc-----------c-CCCC-
Q 004368 575 TFTDFIACAEYLIKNCYCTKEKL-CIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT-----------M-LDPT- 640 (758)
Q Consensus 575 ~~~D~~~~~~~l~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~-----------~-~~~~- 640 (758)
+++|+.+.+..+++. ++.+++ .++|+|+||.+++.++.++|++++++|+.+|....... + ....
T Consensus 126 ~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
T 2pl5_A 126 SIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNW 203 (366)
T ss_dssp CHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTC
T ss_pred cHHHHHHHHHHHHHH--cCCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEeccCccCCCccchhhHHHHHHHHhCccc
Confidence 677887777776654 345788 89999999999999999999999999999886542110 0 0000
Q ss_pred --------CC--------------------------------------CChhhhhc-----cCCCCCHHH----HHHHHh
Q 004368 641 --------IP--------------------------------------LTTAEWEE-----WGDPWKEEF----YFYMKS 665 (758)
Q Consensus 641 --------~~--------------------------------------~~~~~~~e-----~g~p~~~~~----~~~l~~ 665 (758)
.+ .....+.+ +.....+.. +..+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (366)
T 2pl5_A 204 KNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDH 283 (366)
T ss_dssp GGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHH
T ss_pred ccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHHHHHHHHHHhhhcccChhHHHHHHhhhhh
Confidence 00 00000000 000011222 122333
Q ss_pred cCcc------cccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEE-EecCCCCCCCCCChHHHHHHHHH
Q 004368 666 YSPV------DNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF-KCELGAGHFSKSGRFERLREAAF 738 (758)
Q Consensus 666 ~sp~------~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~~gH~~~~~~~~~~~~~~~ 738 (758)
++.. ..+.++++| +||++|++|..||+..+.++++.+...+...+++++ + ++||.........+.+.
T Consensus 284 ~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~gH~~~~e~p~~~~~~-- 357 (366)
T 2pl5_A 284 YSLGKGKELTAALSNATCR-FLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQS---GEGHDSFLLKNPKQIEI-- 357 (366)
T ss_dssp CBCCSHHHHHHHHTTCCSE-EEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEECC---CBSSGGGGSCCHHHHHH--
T ss_pred hccccccchhhhhccCCCC-EEEEecCCCcccCHHHHHHHHHHhhhcccCeEEEEeCC---CCCcchhhcChhHHHHH--
Confidence 3221 256677888 999999999999999999999999876655667777 5 89998654443433332
Q ss_pred HHHHHHH
Q 004368 739 TYTFLMR 745 (758)
Q Consensus 739 ~~~fl~~ 745 (758)
+.+||.+
T Consensus 358 i~~fl~~ 364 (366)
T 2pl5_A 358 LKGFLEN 364 (366)
T ss_dssp HHHHHHC
T ss_pred HHHHHcc
Confidence 5677764
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-15 Score=148.77 Aligned_cols=213 Identities=14% Similarity=0.144 Sum_probs=130.3
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHH--cCcEEEEEecCCC------C
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD--RGFIFAIAQIRGG------G 557 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~--~G~~v~~~~~RG~------g 557 (758)
.+.+.+.+. .+...++.|+. ...++||+.||. |... ..+......|.. .++.++.|+.+-. +
T Consensus 15 ~~~~~~~~~---~l~y~ii~P~~-----~~~~~VI~LHG~-G~~~-~dl~~l~~~l~~~~~~~~~i~P~Ap~~~~~~~~~ 84 (246)
T 4f21_A 15 TENLYFQSN---AMNYELMEPAK-----QARFCVIWLHGL-GADG-HDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMG 84 (246)
T ss_dssp --------C---CCCEEEECCSS-----CCCEEEEEEEC---CCC-CCGGGGGGGCCSCCTTEEEEEECGGGSCTTTHHH
T ss_pred cceEEEecC---CcCceEeCCCC-----cCCeEEEEEcCC-CCCH-HHHHHHHHHhhhcCCCeEEEeCCCCccccccCCC
Confidence 355555542 35556676653 246799999993 3322 224333333322 3788888876422 1
Q ss_pred CCchhHHhcccccC-------CcChHhHHHHHHHH----HHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEc
Q 004368 558 ELGRQWYENGKFLK-------KKNTFTDFIACAEY----LIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 626 (758)
Q Consensus 558 ~~G~~~~~~~~~~~-------~~~~~~D~~~~~~~----l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 626 (758)
..|..|+....... ....+....+.++. ..+. .++++||++.|+|+||.+++.++.++|+.|+++|+.
T Consensus 85 ~~~~~Wf~~~~~~~~~~~~~~d~~~i~~~~~~i~~li~~~~~~-gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~ 163 (246)
T 4f21_A 85 MQMRAWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQ-GIASENIILAGFSQGGIIATYTAITSQRKLGGIMAL 163 (246)
T ss_dssp HHHHSCTTCCCC---CGGGGSCCC-CHHHHHHHHHHHHHHHHC--CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEE
T ss_pred CCcccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHc-CCChhcEEEEEeCchHHHHHHHHHhCccccccceeh
Confidence 12455654322111 01122233333333 3343 479999999999999999999999999999999999
Q ss_pred CCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhc
Q 004368 627 VPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREM 706 (758)
Q Consensus 627 ~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~ 706 (758)
+|.+...... - ...++. ..++| ||++||++|++||+..++++++.|++.
T Consensus 164 sG~lp~~~~~---------------~-----------~~~~~~----~~~~P-vl~~HG~~D~vVp~~~~~~~~~~L~~~ 212 (246)
T 4f21_A 164 STYLPAWDNF---------------K-----------GKITSI----NKGLP-ILVCHGTDDQVLPEVLGHDLSDKLKVS 212 (246)
T ss_dssp SCCCTTHHHH---------------S-----------TTCCGG----GTTCC-EEEEEETTCSSSCHHHHHHHHHHHHTT
T ss_pred hhccCccccc---------------c-----------cccccc----ccCCc-hhhcccCCCCccCHHHHHHHHHHHHHC
Confidence 9864321110 0 000110 11456 999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 707 KTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 707 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
|.++++..|+ +.||... . ++..++.+||.+.|++
T Consensus 213 g~~v~~~~y~---g~gH~i~---~---~~l~~~~~fL~k~l~l 246 (246)
T 4f21_A 213 GFANEYKHYV---GMQHSVC---M---EEIKDISNFIAKTFKI 246 (246)
T ss_dssp TCCEEEEEES---SCCSSCC---H---HHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEEC---CCCCccC---H---HHHHHHHHHHHHHhCC
Confidence 9888776665 8899753 2 2344568999999874
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=157.56 Aligned_cols=248 Identities=13% Similarity=0.098 Sum_probs=154.4
Q ss_pred CceeEEEEeeCCC--CeE--EEEEEEeeccccccCCCCCEEEEecCCCccCC--CCC----------------CC-hHHH
Q 004368 483 NYFTERKWASASD--GTQ--IPICIVYRKNLVKLDGSDPLLLYGYGSYEICN--DPA----------------FN-SSRL 539 (758)
Q Consensus 483 ~~~~~~~~~~s~d--G~~--i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~--~~~----------------~~-~~~~ 539 (758)
.....++.|.|.| |.. +.+.++.|++. . .+.|+|.|.||.-+... .|+ +. ....
T Consensus 72 ~~~a~ri~Y~std~~G~p~~~~gtv~~P~~~-~--~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~ 148 (462)
T 3guu_A 72 NAASFQLQYRTTNTQNEAVADVATVWIPAKP-A--SPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIII 148 (462)
T ss_dssp TCEEEEEEEEEECTTSCEEEEEEEEEECSSC-C--SSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHH
T ss_pred CceEEEEEEEEECCCCCEEEEEEEEEecCCC-C--CCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHH
Confidence 4466788777765 543 77788889875 2 35899999999644321 111 11 1245
Q ss_pred HH-HHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC--
Q 004368 540 SL-LDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-- 616 (758)
Q Consensus 540 ~l-~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-- 616 (758)
.| +++||+|+++|++|.|+ .|.. +... ...+.|.+.++..+. +.....+++++|+|+||..+++++...
T Consensus 149 ~~~l~~G~~Vv~~Dy~G~G~---~y~~-~~~~--~~~vlD~vrAa~~~~--~~~~~~~v~l~G~S~GG~aal~aa~~~~~ 220 (462)
T 3guu_A 149 GWALQQGYYVVSSDHEGFKA---AFIA-GYEE--GMAILDGIRALKNYQ--NLPSDSKVALEGYSGGAHATVWATSLAES 220 (462)
T ss_dssp HHHHHTTCEEEEECTTTTTT---CTTC-HHHH--HHHHHHHHHHHHHHT--TCCTTCEEEEEEETHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCEEEEecCCCCCC---cccC-Ccch--hHHHHHHHHHHHHhc--cCCCCCCEEEEeeCccHHHHHHHHHhChh
Confidence 67 89999999999999875 2211 1101 112345555544443 333358999999999999998887753
Q ss_pred --CC-ceeEEEEcCCccchhhccC--CCCC----------------C-----------------------C--Chh----
Q 004368 617 --PD-LFKAAVAAVPFVDVLTTML--DPTI----------------P-----------------------L--TTA---- 646 (758)
Q Consensus 617 --p~-~f~a~v~~~~~~d~~~~~~--~~~~----------------~-----------------------~--~~~---- 646 (758)
|+ .++++++.++..|+...+. +... | . ...
T Consensus 221 yapel~~~g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~ 300 (462)
T 3guu_A 221 YAPELNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVL 300 (462)
T ss_dssp HCTTSEEEEEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHH
T ss_pred hcCccceEEEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHH
Confidence 45 4889999988888543210 0000 0 0 000
Q ss_pred -----hhhcc--C-CC-CCHHHHHHHHhcCccc-----ccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCce
Q 004368 647 -----EWEEW--G-DP-WKEEFYFYMKSYSPVD-----NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 712 (758)
Q Consensus 647 -----~~~e~--g-~p-~~~~~~~~l~~~sp~~-----~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~ 712 (758)
....+ | ++ .++...+.+.+.+.-. ...+.+.| +||+||.+|++||+.+++++++++++.|.++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~P-vlI~hG~~D~vVP~~~s~~l~~~l~~~G~~V~~ 379 (462)
T 3guu_A 301 TYPFLNVFSLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFP-RFIWHAIPDEIVPYQPAATYVKEQCAKGANINF 379 (462)
T ss_dssp HCTTCCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSE-EEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhccCCHHHHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCC-EEEEeCCCCCcCCHHHHHHHHHHHHHcCCCeEE
Confidence 00001 1 11 1233333344333211 12234666 999999999999999999999999999987777
Q ss_pred EEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCC
Q 004368 713 LLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 713 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
..|+ +.+|.. .......+.++||.++|...
T Consensus 380 ~~y~---~~~H~~-----~~~~~~~d~l~WL~~r~~G~ 409 (462)
T 3guu_A 380 SPYP---IAEHLT-----AEIFGLVPSLWFIKQAFDGT 409 (462)
T ss_dssp EEES---SCCHHH-----HHHHTHHHHHHHHHHHHHTC
T ss_pred EEEC---cCCccC-----chhhhHHHHHHHHHHHhCCC
Confidence 7775 889953 22233566789999999665
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.8e-14 Score=142.61 Aligned_cols=224 Identities=16% Similarity=0.164 Sum_probs=132.7
Q ss_pred eeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccccc
Q 004368 491 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 570 (758)
Q Consensus 491 ~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~ 570 (758)
+++.||.+|.... . ++.|.||++||..+.. ..|...+..|.++||.|+.+|+||+|.+...
T Consensus 3 ~~~~~g~~l~y~~-----~----g~g~~vvllHG~~~~~--~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~-------- 63 (274)
T 1a8q_A 3 CTTRDGVEIFYKD-----W----GQGRPVVFIHGWPLNG--DAWQDQLKAVVDAGYRGIAHDRRGHGHSTPV-------- 63 (274)
T ss_dssp EECTTSCEEEEEE-----E----CSSSEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EEccCCCEEEEEe-----c----CCCceEEEECCCcchH--HHHHHHHHHHHhCCCeEEEEcCCCCCCCCCC--------
Confidence 4567887765431 1 2347899999965443 3466666788889999999999999976432
Q ss_pred CCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC-CCceeEEEEcCCccchhhccC-CC-CCCCC-h-
Q 004368 571 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPFVDVLTTML-DP-TIPLT-T- 645 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~~~d~~~~~~-~~-~~~~~-~- 645 (758)
....+++++.+.+..+++. .+.+++.++|+|+||.+++.++.++ |++++++|+.++......... .. ..+.. .
T Consensus 64 ~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 141 (274)
T 1a8q_A 64 WDGYDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVFD 141 (274)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHH--cCCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCccccccccCcccchHHHHH
Confidence 1123455555544444443 2346899999999999998866665 999999998876421100000 00 00000 0
Q ss_pred --------------hhh--hccCC-----CCCHHH----------------HHH---HHhcCcccccCCCCCCeEEEecc
Q 004368 646 --------------AEW--EEWGD-----PWKEEF----------------YFY---MKSYSPVDNVKAQNYPHILVTAG 685 (758)
Q Consensus 646 --------------~~~--~e~g~-----p~~~~~----------------~~~---l~~~sp~~~i~~~~~P~~Li~~G 685 (758)
..+ ..++. ...++. +.. +...+....+.++++| +|+++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G 220 (274)
T 1a8q_A 142 ALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIP-TLVVHG 220 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSC-EEEEEE
T ss_pred HHHHHhhccHHHHHHHhcccccccccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHhhcCCCC-EEEEec
Confidence 000 00110 011111 111 1112333456677898 999999
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCC--hHHHHHHHHHHHHHHH
Q 004368 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG--RFERLREAAFTYTFLM 744 (758)
Q Consensus 686 ~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~~fl~ 744 (758)
++|..+|+.+..++.+++. ...++++++ ++||..... ..+.+.+. +.+||.
T Consensus 221 ~~D~~~~~~~~~~~~~~~~---~~~~~~~~~---~~gH~~~~e~~~p~~~~~~--i~~fl~ 273 (274)
T 1a8q_A 221 DDDQVVPIDATGRKSAQII---PNAELKVYE---GSSHGIAMVPGDKEKFNRD--LLEFLN 273 (274)
T ss_dssp TTCSSSCGGGTHHHHHHHS---TTCEEEEET---TCCTTTTTSTTHHHHHHHH--HHHHHT
T ss_pred CcCCCCCcHHHHHHHHhhC---CCceEEEEC---CCCCceecccCCHHHHHHH--HHHHhc
Confidence 9999999886655544432 245666775 899987655 55544433 566763
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-14 Score=146.17 Aligned_cols=224 Identities=17% Similarity=0.164 Sum_probs=129.7
Q ss_pred eeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccccc
Q 004368 491 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 570 (758)
Q Consensus 491 ~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~ 570 (758)
+++.||.+|.... . ++.|.||++||..+.. ..|...+..|+++||.|+.+|+||+|.+...
T Consensus 3 ~~~~~g~~l~y~~-----~----g~~~~vvllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~-------- 63 (273)
T 1a8s_A 3 FTTRDGTQIYYKD-----W----GSGQPIVFSHGWPLNA--DSWESQMIFLAAQGYRVIAHDRRGHGRSSQP-------- 63 (273)
T ss_dssp EECTTSCEEEEEE-----E----SCSSEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EecCCCcEEEEEE-----c----CCCCEEEEECCCCCcH--HHHhhHHhhHhhCCcEEEEECCCCCCCCCCC--------
Confidence 5677887765331 1 2347899999965443 3466667788899999999999999976432
Q ss_pred CCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC-CCceeEEEEcCCccchhhccCCCCCCCChh---
Q 004368 571 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPFVDVLTTMLDPTIPLTTA--- 646 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~--- 646 (758)
....+++++.+.+..+++. .+.+++.++|+|+||.+++.++.++ |++++++|+.++..................
T Consensus 64 ~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 141 (273)
T 1a8s_A 64 WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFD 141 (273)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--hCCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccCccccccCcHHHHH
Confidence 1123455555544444443 2347899999999999998866655 999999998875321100000000000000
Q ss_pred ---------------hh---hccCC-----CCCHHH----------------HHH---HHhcCcccccCCCCCCeEEEec
Q 004368 647 ---------------EW---EEWGD-----PWKEEF----------------YFY---MKSYSPVDNVKAQNYPHILVTA 684 (758)
Q Consensus 647 ---------------~~---~e~g~-----p~~~~~----------------~~~---l~~~sp~~~i~~~~~P~~Li~~ 684 (758)
.+ ..++. ...++. ++. +...+....+.++++| +|+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~ 220 (273)
T 1a8s_A 142 GIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVP-TLVVH 220 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSC-EEEEE
T ss_pred HHHHHhHhhHHHHHHHhhcccccCcCCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhhhhcCCCC-EEEEE
Confidence 00 00110 011111 111 1112223345567888 99999
Q ss_pred cCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 685 GLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 685 G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
|++|..||+....+.++++. .+.++++++ ++||.......+.+.+ .+.+||.
T Consensus 221 G~~D~~~~~~~~~~~~~~~~---~~~~~~~~~---~~gH~~~~e~p~~~~~--~i~~fl~ 272 (273)
T 1a8s_A 221 GDADQVVPIEASGIASAALV---KGSTLKIYS---GAPHGLTDTHKDQLNA--DLLAFIK 272 (273)
T ss_dssp ETTCSSSCSTTTHHHHHHHS---TTCEEEEET---TCCSCHHHHTHHHHHH--HHHHHHH
T ss_pred CCCCccCChHHHHHHHHHhC---CCcEEEEeC---CCCCcchhhCHHHHHH--HHHHHHh
Confidence 99999999886655544432 235667775 8999753323333322 2456764
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-14 Score=146.92 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=82.4
Q ss_pred eeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccccc
Q 004368 491 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 570 (758)
Q Consensus 491 ~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~ 570 (758)
+++.||.+|.....-+ .+.|.||++||..+.. ..|...+..|+++||.|+.+|+||+|.+...
T Consensus 3 ~~~~~g~~l~y~~~g~-------~~~~~vvllHG~~~~~--~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~-------- 65 (275)
T 1a88_A 3 VTTSDGTNIFYKDWGP-------RDGLPVVFHHGWPLSA--DDWDNQMLFFLSHGYRVIAHDRRGHGRSDQP-------- 65 (275)
T ss_dssp EECTTSCEEEEEEESC-------TTSCEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EEccCCCEEEEEEcCC-------CCCceEEEECCCCCch--hhHHHHHHHHHHCCceEEEEcCCcCCCCCCC--------
Confidence 4567888775432211 1347899999965433 3466667788899999999999999976432
Q ss_pred CCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC-CCceeEEEEcCCc
Q 004368 571 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPF 629 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~~ 629 (758)
....+++++.+.+..+++. .+.+++.++|+|+||.+++.++.++ |++++++|+.++.
T Consensus 66 ~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 123 (275)
T 1a88_A 66 STGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAV 123 (275)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCC
T ss_pred CCCCCHHHHHHHHHHHHHH--cCCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCC
Confidence 1123445544444433332 1236899999999999998867665 9999999988764
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-14 Score=145.99 Aligned_cols=199 Identities=17% Similarity=0.126 Sum_probs=127.0
Q ss_pred eeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccccc
Q 004368 491 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 570 (758)
Q Consensus 491 ~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~ 570 (758)
+.+.||.+|..... ++.|+||++||..+... .|......|. +||.|+.+|+||+|.....
T Consensus 7 ~~~~~g~~l~~~~~---------g~~~~vv~lHG~~~~~~--~~~~~~~~l~-~~~~vi~~d~~G~G~S~~~-------- 66 (262)
T 3r0v_A 7 VPSSDGTPIAFERS---------GSGPPVVLVGGALSTRA--GGAPLAERLA-PHFTVICYDRRGRGDSGDT-------- 66 (262)
T ss_dssp EECTTSCEEEEEEE---------ECSSEEEEECCTTCCGG--GGHHHHHHHT-TTSEEEEECCTTSTTCCCC--------
T ss_pred EEcCCCcEEEEEEc---------CCCCcEEEECCCCcChH--HHHHHHHHHh-cCcEEEEEecCCCcCCCCC--------
Confidence 55678888765421 23578999999665443 3555555665 8999999999999876532
Q ss_pred CCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCC-------
Q 004368 571 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPL------- 643 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~------- 643 (758)
...+++|+.+.+..+++. .+ +++.++|+|+||.+++.++.++| +++++|+.+|..............+
T Consensus 67 -~~~~~~~~~~~~~~~~~~--l~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (262)
T 3r0v_A 67 -PPYAVEREIEDLAAIIDA--AG-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPVPPDYQTRLDAL 141 (262)
T ss_dssp -SSCCHHHHHHHHHHHHHH--TT-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCCCTTHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHh--cC-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchhhhHHHHHHHHH
Confidence 134566666666655554 23 79999999999999999999999 9999999988655322110000000
Q ss_pred ----Ch----hhh-hc-cCCCCCHHHHHHHHh------------------------cCcccccCCCCCCeEEEeccCCCC
Q 004368 644 ----TT----AEW-EE-WGDPWKEEFYFYMKS------------------------YSPVDNVKAQNYPHILVTAGLNDP 689 (758)
Q Consensus 644 ----~~----~~~-~e-~g~p~~~~~~~~l~~------------------------~sp~~~i~~~~~P~~Li~~G~~D~ 689 (758)
.. ..+ .. .+. .++..+.+.. ..+...+.++++| +|+++|++|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~ 218 (262)
T 3r0v_A 142 LAEGRRGDAVTYFMTEGVGV--PPDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIP-TLVMDGGASP 218 (262)
T ss_dssp HHTTCHHHHHHHHHHHTSCC--CHHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSC-EEEEECTTCC
T ss_pred hhccchhhHHHHHhhcccCC--CHHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCC-EEEEeecCCC
Confidence 00 000 00 111 1111111111 1233456677888 9999999999
Q ss_pred CCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCC
Q 004368 690 RVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHF 724 (758)
Q Consensus 690 ~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~ 724 (758)
.+|+..+.++++.+.. .++++++ ++||.
T Consensus 219 ~~~~~~~~~~~~~~~~----~~~~~~~---~~gH~ 246 (262)
T 3r0v_A 219 AWIRHTAQELADTIPN----ARYVTLE---NQTHT 246 (262)
T ss_dssp HHHHHHHHHHHHHSTT----EEEEECC---CSSSS
T ss_pred CCCHHHHHHHHHhCCC----CeEEEec---CCCcc
Confidence 9998888888776632 3455565 89994
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-15 Score=154.13 Aligned_cols=195 Identities=11% Similarity=0.093 Sum_probs=124.2
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
..|+||++||..+.. ..|......|.+ ||.|+.+|+||.|........ .....+++++.+.+..+++. .+.
T Consensus 19 ~~p~vv~~HG~~~~~--~~~~~~~~~l~~-g~~v~~~D~~G~G~S~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~ 89 (269)
T 4dnp_A 19 GERVLVLAHGFGTDQ--SAWNRILPFFLR-DYRVVLYDLVCAGSVNPDFFD----FRRYTTLDPYVDDLLHILDA--LGI 89 (269)
T ss_dssp CSSEEEEECCTTCCG--GGGTTTGGGGTT-TCEEEEECCTTSTTSCGGGCC----TTTCSSSHHHHHHHHHHHHH--TTC
T ss_pred CCCEEEEEeCCCCcH--HHHHHHHHHHhC-CcEEEEEcCCCCCCCCCCCCC----ccccCcHHHHHHHHHHHHHh--cCC
Confidence 458999999965543 335555556666 999999999999887442111 11223556666666665554 244
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCCh--------------hhh----hc-cCCCC
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTT--------------AEW----EE-WGDPW 655 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~--------------~~~----~e-~g~p~ 655 (758)
+++.++|+|+||++++.++.++|++++++|+.+|.......... ...+.. ..+ .. .-...
T Consensus 90 ~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (269)
T 4dnp_A 90 DCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDY-HGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGAD 168 (269)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTB-CCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCSS
T ss_pred CeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHh-ccccchHHHHHHHHhccccHHHHHHHhhhhhccCC
Confidence 69999999999999999999999999999999886442211000 000000 000 00 00011
Q ss_pred CHH-------------------HHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEE
Q 004368 656 KEE-------------------FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 716 (758)
Q Consensus 656 ~~~-------------------~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 716 (758)
.++ ....+...+....+.++++| +|+++|++|..+++..+.++++.+.. ..++++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~ 244 (269)
T 4dnp_A 169 VPAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVP-CHIFQTARDHSVPASVATYLKNHLGG---KNTVHWLN 244 (269)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSC-EEEEEEESBTTBCHHHHHHHHHHSSS---CEEEEEEE
T ss_pred ChhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCC-EEEEecCCCcccCHHHHHHHHHhCCC---CceEEEeC
Confidence 111 11122233445566677888 99999999999999988888777643 14667776
Q ss_pred ecCCCCCCCC
Q 004368 717 CELGAGHFSK 726 (758)
Q Consensus 717 ~~~~~gH~~~ 726 (758)
++||...
T Consensus 245 ---~~gH~~~ 251 (269)
T 4dnp_A 245 ---IEGHLPH 251 (269)
T ss_dssp ---EESSCHH
T ss_pred ---CCCCCcc
Confidence 8899753
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.6e-15 Score=159.09 Aligned_cols=247 Identities=13% Similarity=0.099 Sum_probs=147.2
Q ss_pred EEeeCCCCeEEEEEEEeeccc--cccCCCCCEEEEecCCCccCCCCCCChHHHHHH----HcCc---EEEEEecCCCCCC
Q 004368 489 KWASASDGTQIPICIVYRKNL--VKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLL----DRGF---IFAIAQIRGGGEL 559 (758)
Q Consensus 489 ~~~~s~dG~~i~~~l~~p~~~--~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~----~~G~---~v~~~~~RG~g~~ 559 (758)
..+.+.||.+|.+..+.|++. ..+.++.|+||++||..+... .|...+..|+ +.|| .|+.+|+||.|..
T Consensus 23 ~~~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~~~--~~~~~~~~L~~~~~~~G~~~~~vi~~D~~G~G~S 100 (398)
T 2y6u_A 23 STLCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSKV--VWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGDS 100 (398)
T ss_dssp SBSSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCCGG--GGGGGGGGSCCCBTTTTEEEEEEEEECCTTSHHH
T ss_pred ccccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCcHH--HHHHHHHHHHHhhhhcCcceeEEEEEcCCCCCCC
Confidence 345678999999987777541 012345689999999655433 3556666777 3489 9999999998754
Q ss_pred chhHHhcccccCCcChHhHHHHHHHHHHHc-C---CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhc
Q 004368 560 GRQWYENGKFLKKKNTFTDFIACAEYLIKN-C---YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 635 (758)
Q Consensus 560 G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~ 635 (758)
... ..+ ......++.+..+.+..+++. . -+++.++.++|+|+||.+++.++.++|++++++|+.+|.......
T Consensus 101 ~~~--~~~-~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 177 (398)
T 2y6u_A 101 AVR--NRG-RLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVVITRKA 177 (398)
T ss_dssp HHH--TTT-TBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCCCC
T ss_pred CCC--Ccc-ccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEeccccccccc
Confidence 321 100 011123344444433333332 2 144556999999999999999999999999999999987653110
Q ss_pred cC--CCCCC-----CC-----------------hhhh----h--ccCCCCCHHHHHHHHh--------------------
Q 004368 636 ML--DPTIP-----LT-----------------TAEW----E--EWGDPWKEEFYFYMKS-------------------- 665 (758)
Q Consensus 636 ~~--~~~~~-----~~-----------------~~~~----~--e~g~p~~~~~~~~l~~-------------------- 665 (758)
.. ....+ +. ...+ . .+....+++..+.+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (398)
T 2y6u_A 178 IGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTKM 257 (398)
T ss_dssp CSCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC--------CCEEESS
T ss_pred cccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCccccccccCCCceEecC
Confidence 00 00000 00 0000 0 0111123333222211
Q ss_pred --------c--------CcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCCh
Q 004368 666 --------Y--------SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGR 729 (758)
Q Consensus 666 --------~--------sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~ 729 (758)
+ ++...+.++++| +|+++|++|..||+..+.++++.+. ..++++++ ++||......
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vLii~G~~D~~~~~~~~~~l~~~~~----~~~~~~~~---~~gH~~~~e~ 329 (398)
T 2y6u_A 258 EQAQNLLCYMNMQTFAPFLISNVKFVRKR-TIHIVGARSNWCPPQNQLFLQKTLQ----NYHLDVIP---GGSHLVNVEA 329 (398)
T ss_dssp CHHHHHHTTSCGGGTHHHHHHHGGGCCSE-EEEEEETTCCSSCHHHHHHHHHHCS----SEEEEEET---TCCTTHHHHS
T ss_pred CchhhhhhhcccccchHHHHHhccccCCC-EEEEEcCCCCCCCHHHHHHHHHhCC----CceEEEeC---CCCccchhcC
Confidence 0 111345566787 9999999999999988888877664 34566665 8999753322
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 004368 730 FERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 730 ~~~~~~~~~~~~fl~~~l~~~ 750 (758)
...+.+ .+.+||.+++...
T Consensus 330 p~~~~~--~i~~fl~~~~~~~ 348 (398)
T 2y6u_A 330 PDLVIE--RINHHIHEFVLTS 348 (398)
T ss_dssp HHHHHH--HHHHHHHHHHHHS
T ss_pred HHHHHH--HHHHHHHHHHHhH
Confidence 333332 3578888877543
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.58 E-value=9.2e-14 Score=154.30 Aligned_cols=231 Identities=15% Similarity=0.121 Sum_probs=140.3
Q ss_pred EEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcc
Q 004368 488 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG 567 (758)
Q Consensus 488 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~ 567 (758)
.+...+.||.+|... .. ++.|+||++||+.+.. ..|......|+++||.|+.+|+||.|.....
T Consensus 5 ~~~~~~~dG~~l~y~---~~------G~gp~VV~lHG~~~~~--~~~~~l~~~La~~Gy~Vi~~D~rG~G~S~~~----- 68 (456)
T 3vdx_A 5 TVGQENSTSIDLYYE---DH------GTGVPVVLIHGFPLSG--HSWERQSAALLDAGYRVITYDRRGFGQSSQP----- 68 (456)
T ss_dssp EEEEETTEEEEEEEE---EE------SSSEEEEEECCTTCCG--GGGTTHHHHHHHHTEEEEEECCTTSTTSCCC-----
T ss_pred eecccccCCeEEEEE---Ee------CCCCEEEEECCCCCcH--HHHHHHHHHHHHCCcEEEEECCCCCCCCCCC-----
Confidence 344567788776532 11 2458999999976543 3366777888899999999999999876532
Q ss_pred cccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC-CCceeEEEEcCCccchhhccCCCCCCC-Ch
Q 004368 568 KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPFVDVLTTMLDPTIPL-TT 645 (758)
Q Consensus 568 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~~~d~~~~~~~~~~~~-~~ 645 (758)
....+++++.+.+..+++. ++.+++.++|+|+||++++.+++++ |++++++|+.+|..+............ ..
T Consensus 69 ---~~~~s~~~~a~dl~~~l~~--l~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~~~~~~~~~~~~~~~~ 143 (456)
T 3vdx_A 69 ---TTGYDYDTFAADLNTVLET--LDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAAPQ 143 (456)
T ss_dssp ---SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCSCCBCCSSCCSCSBCH
T ss_pred ---CCCCCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcccccccccccccccchH
Confidence 1223444544444443332 2457999999999999888877776 899999999998765322110000000 00
Q ss_pred h------------------h-hhc-cC------CCCCHHHHHHH----------------H--hcCcccccCCCCCCeEE
Q 004368 646 A------------------E-WEE-WG------DPWKEEFYFYM----------------K--SYSPVDNVKAQNYPHIL 681 (758)
Q Consensus 646 ~------------------~-~~e-~g------~p~~~~~~~~l----------------~--~~sp~~~i~~~~~P~~L 681 (758)
. . +.. +. ....++..... . ..+....+.++++| +|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P-vL 222 (456)
T 3vdx_A 144 EFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVP-AL 222 (456)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHTTTTTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTCCCTTTSTTCCSC-CE
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHhcccccccccccHHHHHHHhhhccccchhhhhhhhhhhhhhHHHHhhhCCCC-EE
Confidence 0 0 000 00 01111111100 0 11233456677888 99
Q ss_pred EeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 682 VTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 682 i~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
+++|++|..||+.+..+.++++. ...++++++ ++||.......+.+.+. +.+||.+.++
T Consensus 223 iI~G~~D~~vp~~~~~~~l~~~~---~~~~~~~i~---gagH~~~~e~p~~v~~~--I~~FL~~~l~ 281 (456)
T 3vdx_A 223 ILHGTGDRTLPIENTARVFHKAL---PSAEYVEVE---GAPHGLLWTHAEEVNTA--LLAFLAKALE 281 (456)
T ss_dssp EEEETTCSSSCGGGTHHHHHHHC---TTSEEEEET---TCCSCTTTTTHHHHHHH--HHHHHHHHHH
T ss_pred EEEeCCCCCcCHHHHHHHHHHHC---CCceEEEeC---CCCCcchhhCHHHHHHH--HHHHHHHhhc
Confidence 99999999999984444443332 345677775 89998765555544433 5788887763
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.4e-15 Score=142.56 Aligned_cols=181 Identities=17% Similarity=0.186 Sum_probs=119.4
Q ss_pred CCCEEEEecCCCccCC-CCCCCh-HHHHHHHc-CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCC
Q 004368 515 SDPLLLYGYGSYEICN-DPAFNS-SRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~-~~~~~~-~~~~l~~~-G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 591 (758)
+.|+||++||..+... ...|.. ....|.++ ||.|+.+|+||.+. .++...++.+++.-.
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~------------------~~~~~~~~~~~~~l~ 64 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPIT------------------ARESIWLPFMETELH 64 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTT------------------CCHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCc------------------ccHHHHHHHHHHHhC
Confidence 5689999999766532 233544 44566666 99999999998532 123334444444322
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhcc-CCCCCHHHHHHHHhcCccc
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW-GDPWKEEFYFYMKSYSPVD 670 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~-g~p~~~~~~~~l~~~sp~~ 670 (758)
. .+++.++|+|+||++++.++.++| ++++|+.+|..+..... ......| ..+.. ++.+.
T Consensus 65 ~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~--------~~~~~~~~~~~~~---~~~~~------ 124 (194)
T 2qs9_A 65 C-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDE--------NERASGYFTRPWQ---WEKIK------ 124 (194)
T ss_dssp C-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCH--------HHHHTSTTSSCCC---HHHHH------
T ss_pred c-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchh--------hhHHHhhhccccc---HHHHH------
Confidence 2 379999999999999999999998 89999998875421110 0000111 12221 11222
Q ss_pred ccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 671 NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 671 ~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
+... |+|+++|++|..||+.++.++++.+ . .++++++ ++||.......+.+.+ +++||.+...
T Consensus 125 ---~~~~-p~lii~G~~D~~vp~~~~~~~~~~~-~----~~~~~~~---~~gH~~~~~~p~~~~~---~~~fl~~~~~ 187 (194)
T 2qs9_A 125 ---ANCP-YIVQFGSTDDPFLPWKEQQEVADRL-E----TKLHKFT---DCGHFQNTEFHELITV---VKSLLKVPAL 187 (194)
T ss_dssp ---HHCS-EEEEEEETTCSSSCHHHHHHHHHHH-T----CEEEEES---SCTTSCSSCCHHHHHH---HHHHHTCCCC
T ss_pred ---hhCC-CEEEEEeCCCCcCCHHHHHHHHHhc-C----CeEEEeC---CCCCccchhCHHHHHH---HHHHHHhhhh
Confidence 1233 5999999999999999999998887 2 3566675 8999877665555544 4688876543
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=147.01 Aligned_cols=211 Identities=12% Similarity=0.056 Sum_probs=130.6
Q ss_pred CEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCc
Q 004368 517 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 596 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 596 (758)
|+||++||..+.. ..|......|.++||.|+.+|+||+|...... ....++++..+.+..++++-.. .++
T Consensus 5 ~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~l~~~l~~l~~-~~~ 74 (258)
T 3dqz_A 5 HHFVLVHNAYHGA--WIWYKLKPLLESAGHRVTAVELAASGIDPRPI-------QAVETVDEYSKPLIETLKSLPE-NEE 74 (258)
T ss_dssp CEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEEECCTTSTTCSSCG-------GGCCSHHHHHHHHHHHHHTSCT-TCC
T ss_pred CcEEEECCCCCcc--ccHHHHHHHHHhCCCEEEEecCCCCcCCCCCC-------CccccHHHhHHHHHHHHHHhcc-cCc
Confidence 8999999976543 33677788999999999999999998765321 1124556666665555544321 379
Q ss_pred EEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccC--------CCCCCCCh--------------------hhh
Q 004368 597 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML--------DPTIPLTT--------------------AEW 648 (758)
Q Consensus 597 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~--------~~~~~~~~--------------------~~~ 648 (758)
+.++|+|+||.++..++.++|++++++|+.+|......... .....+.. ..+
T Consensus 75 ~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3dqz_A 75 VILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKMGPKFM 154 (258)
T ss_dssp EEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETTEEEEEEECCHHHH
T ss_pred eEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhccChhhhhhhHHHH
Confidence 99999999999999999999999999998887543211000 00000000 000
Q ss_pred hc-cCCCCCHHHHHHHH-hc-------------CcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceE
Q 004368 649 EE-WGDPWKEEFYFYMK-SY-------------SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 713 (758)
Q Consensus 649 ~e-~g~p~~~~~~~~l~-~~-------------sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 713 (758)
.+ +.....++....+. .. .+.......++| +|+++|++|..+|+..++++++.+. ..+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~ 229 (258)
T 3dqz_A 155 KARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQ-RVYVMSSEDKAIPCDFIRWMIDNFN----VSKVY 229 (258)
T ss_dssp HHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTGGGSC-EEEEEETTCSSSCHHHHHHHHHHSC----CSCEE
T ss_pred HHHhhccCCHHHHHHHHHhccCCchhhhhhhccccccccccccCC-EEEEECCCCeeeCHHHHHHHHHhCC----cccEE
Confidence 00 00111111111111 11 122222222577 9999999999999988888877663 23677
Q ss_pred EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 004368 714 LFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 714 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 747 (758)
+++ ++||.......+.+.+. +.+|+.+++
T Consensus 230 ~~~---~~gH~~~~~~p~~~~~~--i~~fl~~~~ 258 (258)
T 3dqz_A 230 EID---GGDHMVMLSKPQKLFDS--LSAIATDYM 258 (258)
T ss_dssp EET---TCCSCHHHHSHHHHHHH--HHHHHHHTC
T ss_pred EcC---CCCCchhhcChHHHHHH--HHHHHHHhC
Confidence 776 89997543333434333 567887764
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.58 E-value=7e-15 Score=150.57 Aligned_cols=193 Identities=16% Similarity=0.146 Sum_probs=123.6
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
+.|+||++||..+.... |......|.+ ||.|+.+|+||.|.....- .....+++|+.+.+..+++.- +.
T Consensus 22 ~~~~vv~~HG~~~~~~~--~~~~~~~L~~-~~~vi~~d~~G~G~s~~~~------~~~~~~~~~~~~~~~~~~~~l--~~ 90 (278)
T 3oos_A 22 EGPPLCVTHLYSEYNDN--GNTFANPFTD-HYSVYLVNLKGCGNSDSAK------NDSEYSMTETIKDLEAIREAL--YI 90 (278)
T ss_dssp SSSEEEECCSSEECCTT--CCTTTGGGGG-TSEEEEECCTTSTTSCCCS------SGGGGSHHHHHHHHHHHHHHT--TC
T ss_pred CCCeEEEEcCCCcchHH--HHHHHHHhhc-CceEEEEcCCCCCCCCCCC------CcccCcHHHHHHHHHHHHHHh--CC
Confidence 45789999997654433 5555556655 9999999999998764310 112235667777666665542 44
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCC-----CC----------------Ch--------
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI-----PL----------------TT-------- 645 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~-----~~----------------~~-------- 645 (758)
+++.++|+|+||.+++.++.++|++++++|+.+|............. +. ..
T Consensus 91 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (278)
T 3oos_A 91 NKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNRIVSIMNALNDDSTVQEERKALSR 170 (278)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTTSTTSTTSTTHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccchhhhhhchhHHHHHHHHHhhcccccCchHHHHHHH
Confidence 68999999999999999999999999999999998761110000000 00 00
Q ss_pred ----------hhhhc-cCCCC----CHHHHHHHH-----hcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHh
Q 004368 646 ----------AEWEE-WGDPW----KEEFYFYMK-----SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLRE 705 (758)
Q Consensus 646 ----------~~~~e-~g~p~----~~~~~~~l~-----~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~ 705 (758)
..+.. +..+. .......+. ..+....+.++++| +|+++|++|..+|+..+.++++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~l~i~g~~D~~~~~~~~~~~~~~~~- 248 (278)
T 3oos_A 171 EWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIP-SFIYCGKHDVQCPYIFSCEIANLIP- 248 (278)
T ss_dssp HHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHHHHTTCCSC-EEEEEETTCSSSCHHHHHHHHHHST-
T ss_pred HHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHHHHhCCCCC-EEEEEeccCCCCCHHHHHHHHhhCC-
Confidence 00000 01110 001111111 33344556677888 9999999999999988888887763
Q ss_pred cCCCCceEEEEecCCCCCCCC
Q 004368 706 MKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 706 ~~~~~~~~~~~~~~~~gH~~~ 726 (758)
..++++++ ++||...
T Consensus 249 ---~~~~~~~~---~~gH~~~ 263 (278)
T 3oos_A 249 ---NATLTKFE---ESNHNPF 263 (278)
T ss_dssp ---TEEEEEET---TCSSCHH
T ss_pred ---CcEEEEcC---CcCCCcc
Confidence 34566665 8999753
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-15 Score=149.23 Aligned_cols=175 Identities=15% Similarity=0.122 Sum_probs=117.9
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCCh--HHHHHHHcCcEEEEEecCCCCCCchhHHhcccccC
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS--SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK 571 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~--~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~ 571 (758)
.||.++....+.|++. ++.|+||++||+.+... .|.. ....|+++||.|+.+|+||.|........ ....
T Consensus 14 ~~g~~l~~~~~~p~~~----~~~~~vv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~--~~~~ 85 (210)
T 1imj_A 14 VQGQALFFREALPGSG----QARFSVLLLHGIRFSSE--TWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAP--APIG 85 (210)
T ss_dssp ETTEEECEEEEECSSS----CCSCEEEECCCTTCCHH--HHHHHTHHHHHHHTTCEEEEECCTTSGGGTTSCCS--SCTT
T ss_pred eCCeEEEEEEeCCCCC----CCCceEEEECCCCCccc--eeecchhHHHHHHCCCeEEEecCCCCCCCCCCCCc--chhh
Confidence 3888999887766542 46799999999755432 2444 35678889999999999998754332100 0000
Q ss_pred CcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhcc
Q 004368 572 KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW 651 (758)
Q Consensus 572 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~ 651 (758)
.....+|+.+.++.+ +.+++.++|+|+||.++..++.++|+.++++|+.+|......
T Consensus 86 ~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~----------------- 142 (210)
T 1imj_A 86 ELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI----------------- 142 (210)
T ss_dssp SCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGS-----------------
T ss_pred hcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCccccc-----------------
Confidence 000114555555544 347899999999999999999999999999999988643110
Q ss_pred CCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCC
Q 004368 652 GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 652 g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
.. .. +.+++.| +|+++|++|. +++..++++ +.+ .+.+.+.++ ++||..
T Consensus 143 ----~~---~~---------~~~~~~p-~l~i~g~~D~-~~~~~~~~~-~~~----~~~~~~~~~---~~~H~~ 190 (210)
T 1imj_A 143 ----NA---AN---------YASVKTP-ALIVYGDQDP-MGQTSFEHL-KQL----PNHRVLIMK---GAGHPC 190 (210)
T ss_dssp ----CH---HH---------HHTCCSC-EEEEEETTCH-HHHHHHHHH-TTS----SSEEEEEET---TCCTTH
T ss_pred ----cc---hh---------hhhCCCC-EEEEEcCccc-CCHHHHHHH-hhC----CCCCEEEec---CCCcch
Confidence 00 11 1234577 9999999999 987776665 433 234555664 899974
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-14 Score=151.91 Aligned_cols=248 Identities=14% Similarity=0.075 Sum_probs=153.4
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCc--ceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV--TASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~--~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
+..++|||||++|||+.+..|. .+|+++|+++++...++.... ...+.||||| .|+|++.+. +||++++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~--~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~-----~l~~~d~~ 110 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGN--RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNEL-----NLMKVDLE 110 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSS--CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTT-----EEEEEETT
T ss_pred eecCcCCCCCCEEEEEEecCCC--ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCC-----cEEEEECC
Confidence 3567999999999999987664 578999999998776533222 2337899999 788887543 69999988
Q ss_pred CCCCCcEEEeeecCCceeeE-------------------EEEcCCCcEEEEEe--cCCcceEEEEEeCCCCCceEEeecc
Q 004368 270 ADQSNDICLYHEKDDIYSLG-------------------LQASESKKFLFIAS--ESKITRFVFYLDVSKPEELRVLTPR 328 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~-------------------~~~S~Dg~~l~~~s--~~~~~~~l~~~d~~~~~~~~~l~~~ 328 (758)
++ +...++..... +... +.|+|||+++++.. .......||++|+++++ .+.+...
T Consensus 111 ~~--~~~~~~~~~~~-~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~~~~~ 186 (396)
T 3c5m_A 111 TL--EEQVIYTVDEE-WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE-LEVIHQD 186 (396)
T ss_dssp TC--CEEEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC-EEEEEEE
T ss_pred CC--CcEEEEecccc-cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc-EEeeccC
Confidence 76 33444442221 1111 23566666655432 12345789999999887 6666543
Q ss_pred ccce-eeEEee-cCCEEEEEEcCCC-CCCcEEEEEeCCCCCcceeeecCCCCceeeeEE--EeCCEEEEEEEeCCeeE--
Q 004368 329 VVGV-DTAASH-RGNHFFITRRSDE-LFNSELLACPVDNTSETTVLIPHRESVKLQDIQ--LFIDHLAVYEREGGLQK-- 401 (758)
Q Consensus 329 ~~~~-~~~~s~-dg~~l~~~s~~~~-~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~-- 401 (758)
.... ...|+| ||++|++.++... ..+.+|+.+++++. ....+........+..+. ++++.|++....++...
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS-NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV 265 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC-CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC-ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce
Confidence 3333 335999 8998999886321 11268999998652 233344422222343444 45667887777766544
Q ss_pred EEEEEcCCCCCccccccCCceee-ccCcccccCCCCccc-CCcEEEEEEecCCCC--------------CEEEEEECCCC
Q 004368 402 ITTYRLPAVGEPLKSLQGGKSVE-FIDPVYSIDPSESVF-SSRILRFHYSSLRTP--------------PSVYDYDMDMG 465 (758)
Q Consensus 402 l~v~~l~~~g~~~~~l~~~~~i~-~p~~~~~i~~~~~~~-d~~~l~~~~sS~~~P--------------~~i~~~d~~~~ 465 (758)
++++++.. |+ . ..+. ++. .. ..+++ ++..+++.. +. .| ..+|.+|+.++
T Consensus 266 l~~~d~~~-g~-~------~~l~~~~~--~~---~~~s~~dg~~l~~~~-~~-~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 266 IYKANPET-LE-N------EEVMVMPP--CS---HLMSNFDGSLMVGDG-CD-APVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEEECTTT-CC-E------EEEEECCS--EE---EEEECSSSSEEEEEE-CC-C----------CCCCCCEEEEEETTTT
T ss_pred EEEEECCC-CC-e------EEeeeCCC--CC---CCccCCCCceEEEec-CC-cceeeccccccccCCCCcEEEEecccC
Confidence 88887763 22 2 1121 221 11 34566 777555433 22 44 78999999888
Q ss_pred cE
Q 004368 466 IS 467 (758)
Q Consensus 466 ~~ 467 (758)
+.
T Consensus 331 ~~ 332 (396)
T 3c5m_A 331 SA 332 (396)
T ss_dssp BC
T ss_pred ce
Confidence 74
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.6e-14 Score=145.42 Aligned_cols=120 Identities=16% Similarity=0.161 Sum_probs=82.9
Q ss_pred eeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccccc
Q 004368 491 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 570 (758)
Q Consensus 491 ~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~ 570 (758)
+++.||.+|.....-+ ...|.||++||..+.. ..|...+..|+++||.|+.+|+||+|.+...
T Consensus 4 ~~~~~g~~l~y~~~g~-------~~~~~vvllHG~~~~~--~~w~~~~~~L~~~g~~vi~~D~~G~G~S~~~-------- 66 (276)
T 1zoi_A 4 VTTKDGVQIFYKDWGP-------RDAPVIHFHHGWPLSA--DDWDAQLLFFLAHGYRVVAHDRRGHGRSSQV-------- 66 (276)
T ss_dssp EECTTSCEEEEEEESC-------TTSCEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EECCCCcEEEEEecCC-------CCCCeEEEECCCCcch--hHHHHHHHHHHhCCCEEEEecCCCCCCCCCC--------
Confidence 4567888775442211 1347899999965443 3466677788899999999999999977532
Q ss_pred CCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC-CCceeEEEEcCCc
Q 004368 571 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPF 629 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~~ 629 (758)
....+++++.+.+..+++. .+.+++.++|+|+||.+++.++.++ |++++++|+.++.
T Consensus 67 ~~~~~~~~~~~d~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 124 (276)
T 1zoi_A 67 WDGHDMDHYADDVAAVVAH--LGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAV 124 (276)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCC
T ss_pred CCCCCHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCC
Confidence 1123445544444433332 1236899999999999998877766 9999999988764
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=150.76 Aligned_cols=225 Identities=12% Similarity=0.072 Sum_probs=137.1
Q ss_pred CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcC
Q 004368 495 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN 574 (758)
Q Consensus 495 dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~ 574 (758)
+|.+|..... ++.|+||++||..+... .|......|+++||.|+.+|+||.|..... ....
T Consensus 17 ~g~~l~~~~~---------g~~~~vv~~HG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~G~S~~~--------~~~~ 77 (309)
T 3u1t_A 17 EGATIAYVDE---------GSGQPVLFLHGNPTSSY--LWRNIIPYVVAAGYRAVAPDLIGMGDSAKP--------DIEY 77 (309)
T ss_dssp TTEEEEEEEE---------ECSSEEEEECCTTCCGG--GGTTTHHHHHHTTCEEEEECCTTSTTSCCC--------SSCC
T ss_pred CCeEEEEEEc---------CCCCEEEEECCCcchhh--hHHHHHHHHHhCCCEEEEEccCCCCCCCCC--------Cccc
Confidence 7777654321 23589999999655433 366667778899999999999999876431 1234
Q ss_pred hHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh-----------------ccC
Q 004368 575 TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT-----------------TML 637 (758)
Q Consensus 575 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~-----------------~~~ 637 (758)
+++|+.+.+..+++.- ..+++.++|+|+||++++.++.++|++++++|+.+|...... .+.
T Consensus 78 ~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (309)
T 3u1t_A 78 RLQDHVAYMDGFIDAL--GLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFRDLR 155 (309)
T ss_dssp CHHHHHHHHHHHHHHH--TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGGGHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHc--CCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccccchhhhHHHHHHh
Confidence 5667666666555442 347899999999999999999999999999999886543220 000
Q ss_pred CCC--------CCCChhhh-hc--cCCCCCHHHHHHH-----------------Hhc--------------CcccccCCC
Q 004368 638 DPT--------IPLTTAEW-EE--WGDPWKEEFYFYM-----------------KSY--------------SPVDNVKAQ 675 (758)
Q Consensus 638 ~~~--------~~~~~~~~-~e--~g~p~~~~~~~~l-----------------~~~--------------sp~~~i~~~ 675 (758)
... .......+ .. ......++....+ +.. +....+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 235 (309)
T 3u1t_A 156 TADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGEWLMAS 235 (309)
T ss_dssp STTHHHHHHTTTCHHHHTHHHHTSCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHC
T ss_pred ccchhhhhccccceehhhhcccccccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhhhhhhhhhhhcccC
Confidence 000 00000000 00 0001111111111 110 001123455
Q ss_pred CCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCC
Q 004368 676 NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 676 ~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
++| +|+++|++|..+|+..+.++++.+.. .+.+.++ ++||.......+.+.+ .+.+||.+..+..
T Consensus 236 ~~P-~l~i~G~~D~~~~~~~~~~~~~~~~~----~~~~~~~---~~gH~~~~~~p~~~~~--~i~~fl~~~~~~~ 300 (309)
T 3u1t_A 236 PIP-KLLFHAEPGALAPKPVVDYLSENVPN----LEVRFVG---AGTHFLQEDHPHLIGQ--GIADWLRRNKPHA 300 (309)
T ss_dssp CSC-EEEEEEEECSSSCHHHHHHHHHHSTT----EEEEEEE---EESSCHHHHCHHHHHH--HHHHHHHHHCCCC
T ss_pred CCC-EEEEecCCCCCCCHHHHHHHHhhCCC----CEEEEec---CCcccchhhCHHHHHH--HHHHHHHhcchhh
Confidence 788 99999999999998888788777643 3455555 8999654333333322 2578888876544
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-12 Score=140.64 Aligned_cols=257 Identities=9% Similarity=0.019 Sum_probs=156.6
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCc-ceeE--EEecCC-eEEEEEeCC-------------
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV-TASV--EWAGNE-ALVYITMDE------------- 256 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~-~~~~--~wspDg-~l~y~~~~~------------- 256 (758)
.+.|||||++|+|.... .+|+++|+++|+.... ..+.. .... .++||| .++....+.
T Consensus 85 ~~~~spdg~~l~~~~~~-----~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDG-----RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp SCEECTTSSEEEEEETT-----TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred ceEEcCCCCEEEEEeCC-----CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhh
Confidence 45899999999999853 3799999999987654 33322 2223 348999 555443221
Q ss_pred ----CCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcC-CCcEEEEEecCC---cceEEEEEeCCCCCceEEeecc
Q 004368 257 ----ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESK---ITRFVFYLDVSKPEELRVLTPR 328 (758)
Q Consensus 257 ----~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~-Dg~~l~~~s~~~---~~~~l~~~d~~~~~~~~~l~~~ 328 (758)
......|+++++.++. ...+.... .....+.||| ||++|++.+... ...+||++|++++. .+.++..
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~--~~~l~~~~--~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~ 234 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGE--STVILQEN--QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTH 234 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCC--EEEEEEES--SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCC
T ss_pred hhhccCCcceEEEEECCCCc--eEEeecCC--ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeC
Confidence 1123579999998773 34444332 2344688999 999999887642 24689999998876 6777664
Q ss_pred ccc--e-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCC------ceeeeEEEeCCEEEEEEEe---
Q 004368 329 VVG--V-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRES------VKLQDIQLFIDHLAVYERE--- 396 (758)
Q Consensus 329 ~~~--~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~l~~~~~~--- 396 (758)
..+ + ...|||||++|++.++..+.....|+++|+++. ..+.+...... ..-..++++++.|++...+
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 313 (388)
T 3pe7_A 235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL-ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSG 313 (388)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC-CEEEEEEECCEEEEEECTTSSEEEEEECCC---------
T ss_pred CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC-ceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccc
Confidence 422 2 235999999999988876444456999999863 33333221110 1112578888888876543
Q ss_pred ---CCeeEEEEEEcCCCCCccccccCCce-ee--ccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCC
Q 004368 397 ---GGLQKITTYRLPAVGEPLKSLQGGKS-VE--FIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMG 465 (758)
Q Consensus 397 ---~g~~~l~v~~l~~~g~~~~~l~~~~~-i~--~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~ 465 (758)
.+...|+++++. ++.++.++.... .. ..+....+..+.+++|++.++|... ......+|.+++..+
T Consensus 314 ~~~~~~~~i~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~-~~g~~~l~~~~l~~~ 385 (388)
T 3pe7_A 314 YKIENDPFLYVFNMK--NGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD-VHGKPALYLATLPES 385 (388)
T ss_dssp ---CCCCEEEEEETT--TTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC-TTSSCEEEEEECCGG
T ss_pred cccCCCCEEEEEecc--CCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEec-CCCceeEEEEECChh
Confidence 566678889887 333222211100 00 0000002344677889988877654 345678999998654
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-14 Score=142.84 Aligned_cols=193 Identities=15% Similarity=0.087 Sum_probs=116.2
Q ss_pred CEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChH-hHHHHHHHHHHHcCCCCCC
Q 004368 517 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF-TDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~-~D~~~~~~~l~~~~~~d~~ 595 (758)
|.||++||..+.. ...|...+..|.++||.|+.+|+||+|.+... . .......+ +|+.++++++...+ .+
T Consensus 24 ~~vvllHG~~~~~-~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~--~---~~~~~~~~~~~~~~~~~~l~~l~---~~ 94 (254)
T 2ocg_A 24 HAVLLLPGMLGSG-ETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPP--D---RDFPADFFERDAKDAVDLMKALK---FK 94 (254)
T ss_dssp EEEEEECCTTCCH-HHHCHHHHHHSCTTTEEEEEECCTTSTTCCSS--C---CCCCTTHHHHHHHHHHHHHHHTT---CS
T ss_pred CeEEEECCCCCCC-ccchHHHHHHHhhCCCeEEEECCCCCCCCCCC--C---CCCChHHHHHHHHHHHHHHHHhC---CC
Confidence 5799999965431 12356666778888999999999999976431 0 01111112 34445555555544 47
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh-----ccCCCCC-CCChh---hh-hccCCCCC----HHHHH
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT-----TMLDPTI-PLTTA---EW-EEWGDPWK----EEFYF 661 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~-----~~~~~~~-~~~~~---~~-~e~g~p~~----~~~~~ 661 (758)
++.++|+|+||.+++.++.++|++++++|+..+...+.. ....... .+... .. ..++.... ....+
T Consensus 95 ~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (254)
T 2ocg_A 95 KVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTRKPLEALYGYDYFARTCEKWVD 174 (254)
T ss_dssp SEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHHHHHHHHHhHHHHHHHhcchhhHHHHHHHHH
Confidence 899999999999999999999999999998876422110 0000000 00000 00 00111000 00011
Q ss_pred HHHhc-------CcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC
Q 004368 662 YMKSY-------SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 662 ~l~~~-------sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 726 (758)
.+... .....+.++++| +|+++|++|..+|+..+.++++.+. ..++++++ ++||...
T Consensus 175 ~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~---~~gH~~~ 238 (254)
T 2ocg_A 175 GIRQFKHLPDGNICRHLLPRVQCP-ALIVHGEKDPLVPRFHADFIHKHVK----GSRLHLMP---EGKHNLH 238 (254)
T ss_dssp HHHGGGGSGGGBSSGGGGGGCCSC-EEEEEETTCSSSCHHHHHHHHHHST----TCEEEEET---TCCTTHH
T ss_pred HHHHHHhccCCchhhhhhhcccCC-EEEEecCCCccCCHHHHHHHHHhCC----CCEEEEcC---CCCCchh
Confidence 11111 112345667898 9999999999999988887776653 24566665 8999754
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=146.93 Aligned_cols=121 Identities=21% Similarity=0.293 Sum_probs=91.2
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 573 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~ 573 (758)
.||.+|.....-+ ++.|+||++||..+... .|......|.++||.|+.+|+||.|...... ....
T Consensus 11 ~~g~~l~~~~~g~-------~~~~~vv~~hG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~------~~~~ 75 (286)
T 3qit_A 11 FGGNQICLCSWGS-------PEHPVVLCIHGILEQGL--AWQEVALPLAAQGYRVVAPDLFGHGRSSHLE------MVTS 75 (286)
T ss_dssp ETTEEEEEEEESC-------TTSCEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTSTTSCCCS------SGGG
T ss_pred cCCceEEEeecCC-------CCCCEEEEECCCCcccc--hHHHHHHHhhhcCeEEEEECCCCCCCCCCCC------CCCC
Confidence 4788887764321 34689999999765443 3667778899999999999999998764321 1123
Q ss_pred ChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccc
Q 004368 574 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 631 (758)
Q Consensus 574 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 631 (758)
.+++++.+.+..+++.- +.+++.++|+|+||+++..++.++|++++++|+.+|...
T Consensus 76 ~~~~~~~~~~~~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 131 (286)
T 3qit_A 76 YSSLTFLAQIDRVIQEL--PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLP 131 (286)
T ss_dssp CSHHHHHHHHHHHHHHS--CSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCC
T ss_pred cCHHHHHHHHHHHHHhc--CCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCC
Confidence 45667777666665542 347899999999999999999999999999999998755
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-15 Score=153.50 Aligned_cols=213 Identities=12% Similarity=0.096 Sum_probs=131.9
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|+||++||..+... .|......|.+ ||.|+.+|+||.|........ .....+++++.+.+..+++.- +.+
T Consensus 28 ~~~vv~lHG~~~~~~--~~~~~~~~l~~-g~~v~~~d~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~ 98 (282)
T 3qvm_A 28 EKTVLLAHGFGCDQN--MWRFMLPELEK-QFTVIVFDYVGSGQSDLESFS----TKRYSSLEGYAKDVEEILVAL--DLV 98 (282)
T ss_dssp SCEEEEECCTTCCGG--GGTTTHHHHHT-TSEEEECCCTTSTTSCGGGCC----TTGGGSHHHHHHHHHHHHHHT--TCC
T ss_pred CCeEEEECCCCCCcc--hHHHHHHHHhc-CceEEEEecCCCCCCCCCCCC----ccccccHHHHHHHHHHHHHHc--CCC
Confidence 389999999655433 45555666666 999999999999977543210 112235566666665555542 347
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCCh--------------hhh------hccCCCC
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTT--------------AEW------EEWGDPW 655 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~--------------~~~------~e~g~p~ 655 (758)
++.++|+|+||.++..++.++|++++++|+.+|..............+.. ..+ ..++.+.
T Consensus 99 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T 3qvm_A 99 NVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGASH 178 (282)
T ss_dssp SEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCTTS
T ss_pred ceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcchhhHHHHHHhhccCCcc
Confidence 99999999999999999999999999999999875432210000000000 000 0011111
Q ss_pred CHHH-------------------HHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEE
Q 004368 656 KEEF-------------------YFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 716 (758)
Q Consensus 656 ~~~~-------------------~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 716 (758)
.++. ...+...+....+.++++| +|+++|++|..+|+..+.++++.+. ..++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~ 253 (282)
T 3qvm_A 179 SSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTP-ALIFQSAKDSLASPEVGQYMAENIP----NSQLELIQ 253 (282)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGGCCSC-EEEEEEEECTTCCHHHHHHHHHHSS----SEEEEEEE
T ss_pred chhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhcCCCC-eEEEEeCCCCcCCHHHHHHHHHhCC----CCcEEEec
Confidence 1111 1111222333556677888 9999999999999988888877764 23677776
Q ss_pred ecCCCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 004368 717 CELGAGHFSKSGRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 717 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 747 (758)
++||.......+.+. ..+.+||.++.
T Consensus 254 ---~~gH~~~~~~~~~~~--~~i~~fl~~~~ 279 (282)
T 3qvm_A 254 ---AEGHCLHMTDAGLIT--PLLIHFIQNNQ 279 (282)
T ss_dssp ---EESSCHHHHCHHHHH--HHHHHHHHHC-
T ss_pred ---CCCCcccccCHHHHH--HHHHHHHHhcC
Confidence 899975322223222 23567887653
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=150.21 Aligned_cols=206 Identities=17% Similarity=0.133 Sum_probs=126.2
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|+||++||..+.. ..|......|++ ||.|+.+|+||.|.... .....+++|+.+.+..+++.- +.+
T Consensus 68 ~p~vv~lhG~~~~~--~~~~~~~~~L~~-~~~v~~~D~~G~G~S~~--------~~~~~~~~~~~~dl~~~l~~l--~~~ 134 (314)
T 3kxp_A 68 GPLMLFFHGITSNS--AVFEPLMIRLSD-RFTTIAVDQRGHGLSDK--------PETGYEANDYADDIAGLIRTL--ARG 134 (314)
T ss_dssp SSEEEEECCTTCCG--GGGHHHHHTTTT-TSEEEEECCTTSTTSCC--------CSSCCSHHHHHHHHHHHHHHH--TSS
T ss_pred CCEEEEECCCCCCH--HHHHHHHHHHHc-CCeEEEEeCCCcCCCCC--------CCCCCCHHHHHHHHHHHHHHh--CCC
Confidence 68999999975443 234444455554 79999999999987641 222345667776666665542 337
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc-------CCCCCC-C-Chhhh----hccCCCCCHHHHHH
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-------LDPTIP-L-TTAEW----EEWGDPWKEEFYFY 662 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~-------~~~~~~-~-~~~~~----~e~g~p~~~~~~~~ 662 (758)
++.++|+|+||++++.++.++|++++++|+.+|...+.... ...... . ....+ .........+....
T Consensus 135 ~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (314)
T 3kxp_A 135 HAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEARVNAGSQLFEDIKAVEAYLAGRYPNIPADAIRI 214 (314)
T ss_dssp CEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHHHHHTTTTCSCBSSHHHHHHHHHHHSTTSCHHHHHH
T ss_pred CcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHHHHHhhhchhhhcCHHHHHHHHHhhcccCchHHHHH
Confidence 99999999999999999999999999999998754321110 000000 0 00000 00000011111111
Q ss_pred HHh---------------------------cCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEE
Q 004368 663 MKS---------------------------YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 715 (758)
Q Consensus 663 l~~---------------------------~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 715 (758)
... .+....+.++++| +|+++|++|..+++..+.++++.+. ..+++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~Lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~~ 289 (314)
T 3kxp_A 215 RAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKP-VLIVRGESSKLVSAAALAKTSRLRP----DLPVVVV 289 (314)
T ss_dssp HHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSC-EEEEEETTCSSSCHHHHHHHHHHCT----TSCEEEE
T ss_pred HhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCC-EEEEecCCCccCCHHHHHHHHHhCC----CceEEEc
Confidence 000 0333445567888 9999999999999998888887763 3456777
Q ss_pred EecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 716 KCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 716 ~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
+ ++||.......+.+. ..+.+||.
T Consensus 290 ~---g~gH~~~~e~~~~~~--~~i~~fl~ 313 (314)
T 3kxp_A 290 P---GADHYVNEVSPEITL--KAITNFID 313 (314)
T ss_dssp T---TCCSCHHHHCHHHHH--HHHHHHHH
T ss_pred C---CCCCcchhhCHHHHH--HHHHHHHh
Confidence 5 899975322222222 22456664
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.8e-14 Score=143.47 Aligned_cols=207 Identities=19% Similarity=0.224 Sum_probs=122.0
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++||..+... .|......|+++||.|+.+|+||+|.+... ....+++++.+.+..+++.- ..+
T Consensus 27 g~~vvllHG~~~~~~--~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~--------~~~~~~~~~a~dl~~ll~~l--~~~ 94 (281)
T 3fob_A 27 GKPVVLIHGWPLSGR--SWEYQVPALVEAGYRVITYDRRGFGKSSQP--------WEGYEYDTFTSDLHQLLEQL--ELQ 94 (281)
T ss_dssp SEEEEEECCTTCCGG--GGTTTHHHHHHTTEEEEEECCTTSTTSCCC--------SSCCSHHHHHHHHHHHHHHT--TCC
T ss_pred CCeEEEECCCCCcHH--HHHHHHHHHHhCCCEEEEeCCCCCCCCCCC--------ccccCHHHHHHHHHHHHHHc--CCC
Confidence 467888999765543 356667788899999999999999976532 12234566665555555442 347
Q ss_pred cEEEEEeChhHHHHHHHHhh-CCCceeEEEEcCCccchhhccCC-CCCCCC---h---------------hhh-hc-c--
Q 004368 596 KLCIEGRSAGGLLIGAVLNM-RPDLFKAAVAAVPFVDVLTTMLD-PTIPLT---T---------------AEW-EE-W-- 651 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~~~~d~~~~~~~-~~~~~~---~---------------~~~-~e-~-- 651 (758)
++.++|+|+||.+++.++.. .|++++++|+..+.......... ...... . ..+ .. +
T Consensus 95 ~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (281)
T 3fob_A 95 NVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFAA 174 (281)
T ss_dssp SEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSSTTCSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCB
T ss_pred cEEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhccccccccccchhHHHHHHHHhhhhHHHHHHHHHHHhccc
Confidence 89999999999877665554 58999999987754211100000 000000 0 000 00 0
Q ss_pred C---CCCCHHH-------------------HHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCC
Q 004368 652 G---DPWKEEF-------------------YFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 709 (758)
Q Consensus 652 g---~p~~~~~-------------------~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~ 709 (758)
+ ....+.. +..+...+....+.++++| +||++|++|..||+..+.++.++.. ..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P-~Lii~G~~D~~~p~~~~~~~~~~~~---p~ 250 (281)
T 3fob_A 175 GDRTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIP-TLIIHGDSDATVPFEYSGKLTHEAI---PN 250 (281)
T ss_dssp TTBCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHHHTTCCSC-EEEEEETTCSSSCGGGTHHHHHHHS---TT
T ss_pred ccccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhhhhhcCCC-EEEEecCCCCCcCHHHHHHHHHHhC---CC
Confidence 0 0111111 1111222334456778898 9999999999999987755443322 23
Q ss_pred CceEEEEecCCCCCCCCCChHHHHHHHHHHHHHH
Q 004368 710 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 743 (758)
Q Consensus 710 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 743 (758)
.++++++ ++||.......+.+.+. +.+||
T Consensus 251 ~~~~~i~---~~gH~~~~e~p~~~~~~--i~~Fl 279 (281)
T 3fob_A 251 SKVALIK---GGPHGLNATHAKEFNEA--LLLFL 279 (281)
T ss_dssp CEEEEET---TCCTTHHHHTHHHHHHH--HHHHH
T ss_pred ceEEEeC---CCCCchhhhhHHHHHHH--HHHHh
Confidence 5677776 99997543333333332 45565
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.9e-14 Score=159.55 Aligned_cols=124 Identities=13% Similarity=0.142 Sum_probs=89.2
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhc
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 566 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~ 566 (758)
+..++++.||.++..... ++.|+||++||+.+.. ..|......|+++||.|+.+|+||+|.....
T Consensus 238 ~~~~~~~~dg~~l~~~~~---------g~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~D~~G~G~S~~~---- 302 (555)
T 3i28_A 238 SHGYVTVKPRVRLHFVEL---------GSGPAVCLCHGFPESW--YSWRYQIPALAQAGYRVLAMDMKGYGESSAP---- 302 (555)
T ss_dssp EEEEEEEETTEEEEEEEE---------CSSSEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEEECCTTSTTSCCC----
T ss_pred ceeEEEeCCCcEEEEEEc---------CCCCEEEEEeCCCCch--hHHHHHHHHHHhCCCEEEEecCCCCCCCCCC----
Confidence 455566679988865421 3468999999976544 3467778899999999999999999876431
Q ss_pred ccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 567 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 567 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
......+++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+.+|.
T Consensus 303 --~~~~~~~~~~~~~d~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 361 (555)
T 3i28_A 303 --PEIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTP 361 (555)
T ss_dssp --SCGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --CCcccccHHHHHHHHHHHHHH--cCCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccC
Confidence 011122345544444443332 13479999999999999999999999999999988764
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.54 E-value=6.3e-14 Score=144.62 Aligned_cols=206 Identities=15% Similarity=0.128 Sum_probs=123.4
Q ss_pred CEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCc
Q 004368 517 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 596 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 596 (758)
|.||++||..+.. ..|...+..|+++||.|+.+|+||+|.+... ....+++++.+.+..+++. .+.++
T Consensus 24 ~pvvllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~--------~~~~~~~~~a~dl~~~l~~--l~~~~ 91 (277)
T 1brt_A 24 QPVVLIHGFPLSG--HSWERQSAALLDAGYRVITYDRRGFGQSSQP--------TTGYDYDTFAADLNTVLET--LDLQD 91 (277)
T ss_dssp SEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------SSCCSHHHHHHHHHHHHHH--HTCCS
T ss_pred CeEEEECCCCCcH--HHHHHHHHHHhhCCCEEEEeCCCCCCCCCCC--------CCCccHHHHHHHHHHHHHH--hCCCc
Confidence 4589999965543 3466677788889999999999999976531 1123445544444444332 13468
Q ss_pred EEEEEeChhHHHHHHHHhhCCC-ceeEEEEcCCccchhhc-cCCCC--CCCC------------hhh-hh-----cc---
Q 004368 597 LCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAVPFVDVLTT-MLDPT--IPLT------------TAE-WE-----EW--- 651 (758)
Q Consensus 597 i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~~~~d~~~~-~~~~~--~~~~------------~~~-~~-----e~--- 651 (758)
+.++|+|+||.+++.++.++|+ +++++|+.++....... ..... .+.. ... +. -+
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (277)
T 1brt_A 92 AVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLD 171 (277)
T ss_dssp EEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTHH
T ss_pred eEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccccccHHHHHHHHHHHhcCchhhHHHHHHHHhhcc
Confidence 9999999999999999999999 99999998874321100 00000 0000 000 00 01
Q ss_pred ---CCCCCHHHHHH----------------HH--hcCcccccCCCCCCeEEEeccCCCCCCCChHH-HHHHHHHHhcCCC
Q 004368 652 ---GDPWKEEFYFY----------------MK--SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEP-AKFVAKLREMKTD 709 (758)
Q Consensus 652 ---g~p~~~~~~~~----------------l~--~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~-~~~~~~L~~~~~~ 709 (758)
+....++..+. +. ..+....+.++++| +|+++|++|..+|+..+ .++++.+. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~~~~~~----~ 246 (277)
T 1brt_A 172 ENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVP-ALILHGTGDRTLPIENTARVFHKALP----S 246 (277)
T ss_dssp HHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSC-EEEEEETTCSSSCGGGTHHHHHHHCT----T
T ss_pred ccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhcccCCCC-eEEEecCCCccCChHHHHHHHHHHCC----C
Confidence 11112221111 01 11222345667888 99999999999999888 77766553 3
Q ss_pred CceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 710 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 710 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
.++++++ ++||.......+.+.+ .+.+||.
T Consensus 247 ~~~~~i~---~~gH~~~~e~p~~~~~--~i~~fl~ 276 (277)
T 1brt_A 247 AEYVEVE---GAPHGLLWTHAEEVNT--ALLAFLA 276 (277)
T ss_dssp SEEEEET---TCCTTHHHHTHHHHHH--HHHHHHH
T ss_pred CcEEEeC---CCCcchhhhCHHHHHH--HHHHHHh
Confidence 4566675 8999753223333322 2456664
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=144.51 Aligned_cols=212 Identities=17% Similarity=0.120 Sum_probs=127.3
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCC-CCCchhHHh
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGG-GELGRQWYE 565 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~-g~~G~~~~~ 565 (758)
+...+... |.++..... + .+..|+||++||+.+.... |...+..|++ ||.|+.+|+||. |....
T Consensus 46 ~~~~v~~~-~~~~~~~~~---g----~~~~~~vv~lHG~~~~~~~--~~~~~~~L~~-g~~vi~~D~~G~gG~s~~---- 110 (306)
T 2r11_A 46 KSFYISTR-FGQTHVIAS---G----PEDAPPLVLLHGALFSSTM--WYPNIADWSS-KYRTYAVDIIGDKNKSIP---- 110 (306)
T ss_dssp EEEEECCT-TEEEEEEEE---S----CTTSCEEEEECCTTTCGGG--GTTTHHHHHH-HSEEEEECCTTSSSSCEE----
T ss_pred ceEEEecC-CceEEEEee---C----CCCCCeEEEECCCCCCHHH--HHHHHHHHhc-CCEEEEecCCCCCCCCCC----
Confidence 44555544 445655431 1 1245899999997654433 5555666766 999999999998 54322
Q ss_pred cccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc-------CC
Q 004368 566 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-------LD 638 (758)
Q Consensus 566 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~-------~~ 638 (758)
.....+++|+.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+.+|..+..... ..
T Consensus 111 ----~~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 184 (306)
T 2r11_A 111 ----ENVSGTRTDYANWLLDVFDN--LGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYALG 184 (306)
T ss_dssp ----CSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBTSCCCHHHHHHHHT
T ss_pred ----CCCCCCHHHHHHHHHHHHHh--cCCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccccCcccHHHHHHHhH
Confidence 11234566666666665554 234789999999999999999999999999999999976632110 00
Q ss_pred CCCCCChhhhhcc--CCC-CCHHHH----HHHH-------h----------cCcccccCCCCCCeEEEeccCCCCCCCCh
Q 004368 639 PTIPLTTAEWEEW--GDP-WKEEFY----FYMK-------S----------YSPVDNVKAQNYPHILVTAGLNDPRVMYS 694 (758)
Q Consensus 639 ~~~~~~~~~~~e~--g~p-~~~~~~----~~l~-------~----------~sp~~~i~~~~~P~~Li~~G~~D~~V~~~ 694 (758)
.........+..+ +.. .....+ .... . ......+.++++| +|+++|++|..|++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~ 263 (306)
T 2r11_A 185 LTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVP-ILLLLGEHEVIYDPH 263 (306)
T ss_dssp TTSTTHHHHHHHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSC-EEEEEETTCCSSCHH
T ss_pred HHHHHHHHHHHHHhhCCccccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCC-EEEEEeCCCcccCHH
Confidence 0000000011111 111 010000 0000 0 0112233456788 999999999999988
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCCCCCCCC
Q 004368 695 EPAKFVAKLREMKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 695 ~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 726 (758)
++.++++++. ...++++++ ++||...
T Consensus 264 ~~~~~~~~~~---~~~~~~~~~---~~gH~~~ 289 (306)
T 2r11_A 264 SALHRASSFV---PDIEAEVIK---NAGHVLS 289 (306)
T ss_dssp HHHHHHHHHS---TTCEEEEET---TCCTTHH
T ss_pred HHHHHHHHHC---CCCEEEEeC---CCCCCCc
Confidence 8876666542 245666775 8999753
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=146.30 Aligned_cols=212 Identities=10% Similarity=0.048 Sum_probs=129.2
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
.+.|+||++||..+.. ..|......|.++||.|+.+|+||+|...... ....++++..+.+..+++.- .+
T Consensus 10 ~~~~~vvllHG~~~~~--~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~-------~~~~~~~~~~~~~~~~l~~l-~~ 79 (267)
T 3sty_A 10 FVKKHFVLVHAAFHGA--WCWYKIVALMRSSGHNVTALDLGASGINPKQA-------LQIPNFSDYLSPLMEFMASL-PA 79 (267)
T ss_dssp CCCCEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHHHHHHHHHHTS-CT
T ss_pred CCCCeEEEECCCCCCc--chHHHHHHHHHhcCCeEEEeccccCCCCCCcC-------CccCCHHHHHHHHHHHHHhc-CC
Confidence 4579999999976543 34667777888899999999999998775431 11245566666665555542 14
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh--------ccCCCCCCCChh-------------------
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT--------TMLDPTIPLTTA------------------- 646 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~--------~~~~~~~~~~~~------------------- 646 (758)
.+++.++|+|+||.++..++.++|++++++|+.++...... .+......+...
T Consensus 80 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (267)
T 3sty_A 80 NEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAGP 159 (267)
T ss_dssp TSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCTTSCCCEEECCH
T ss_pred CCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhhhcccchhhhhH
Confidence 58999999999999999999999999999998877542111 000000000000
Q ss_pred -hh-hccCCCCCHHHHHHH---------------HhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCC
Q 004368 647 -EW-EEWGDPWKEEFYFYM---------------KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 709 (758)
Q Consensus 647 -~~-~e~g~p~~~~~~~~l---------------~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~ 709 (758)
.+ ..+.....++....+ ....++......++| +|+++|++|..+++..+.++++.+. .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~----~ 234 (267)
T 3sty_A 160 KFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVK-RVFIVATENDALKKEFLKLMIEKNP----P 234 (267)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSC-EEEEECCCSCHHHHHHHHHHHHHSC----C
T ss_pred HHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCC-EEEEEeCCCCccCHHHHHHHHHhCC----C
Confidence 00 001111112211111 111222222222477 9999999999999888877776653 2
Q ss_pred CceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 710 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 710 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
.++++++ ++||.......+.+.+. +.+|+.+
T Consensus 235 ~~~~~i~---~~gH~~~~e~p~~~~~~--i~~fl~~ 265 (267)
T 3sty_A 235 DEVKEIE---GSDHVTMMSKPQQLFTT--LLSIANK 265 (267)
T ss_dssp SEEEECT---TCCSCHHHHSHHHHHHH--HHHHHHH
T ss_pred ceEEEeC---CCCccccccChHHHHHH--HHHHHHh
Confidence 4566665 89997543333333332 4567664
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-12 Score=131.24 Aligned_cols=233 Identities=9% Similarity=0.003 Sum_probs=150.2
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCC-Cceeecc-cc--CcceeEEEecCC-eEEEEEeCCCCCCceEEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGKP-LV--GVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~-g~~~~~~-~~--~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~ 267 (758)
+..+.|||||++||+..+ + .|+++|+++ ++..... .. .....++|+||| .|++...+. ....+||.++
T Consensus 44 v~~~~~spdg~~l~~~~~--~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~l~~~~ 116 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNSE--G----LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVE-FGKSAIYLLP 116 (297)
T ss_dssp CEEEEECTTSSEEEEEET--T----EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTT-TSSCEEEEEE
T ss_pred eEeeEECCCCCEEEEEcC--C----eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCC-CCcceEEEEE
Confidence 567899999999999752 2 799999999 8776542 11 234568999999 677766432 2446799888
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEE
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFIT 346 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~ 346 (758)
+.++. ...+ ..... ...+.|+|||++|++.....+...||.+++.++. .+.+......+. ..|+|+|+.|++.
T Consensus 117 ~~~~~--~~~~-~~~~~--~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 117 STGGT--PRLM-TKNLP--SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp TTCCC--CEEC-CSSSS--EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEE
T ss_pred CCCCc--eEEe-ecCCC--ccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEE
Confidence 87653 2223 22222 3457899999999987766666789999998776 666655433333 4599999999988
Q ss_pred EcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEE--eCCEEEEEEEeC--------CeeEEEEEEcCCCCCcccc
Q 004368 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL--FIDHLAVYEREG--------GLQKITTYRLPAVGEPLKS 416 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~l~~~~~~~--------g~~~l~v~~l~~~g~~~~~ 416 (758)
+..+ ...+|+.+++.+ .....+..+. ..+..+.+ +++.+++..... +...++++++.. +...
T Consensus 191 ~~~~--~~~~i~~~~~~~-~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~~~- 262 (297)
T 2ojh_A 191 SSRT--GQMQIWRVRVDG-SSVERITDSA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG--GNVE- 262 (297)
T ss_dssp ECTT--SSCEEEEEETTS-SCEEECCCCS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS--CSCE-
T ss_pred ecCC--CCccEEEECCCC-CCcEEEecCC--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC--CCce-
Confidence 8654 257899988754 2222333332 23334444 456777766654 346788888873 3211
Q ss_pred ccCCceeeccCcccccCCCCcccCCcEEEEEEec
Q 004368 417 LQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSS 450 (758)
Q Consensus 417 l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS 450 (758)
....++.....+..+.++++++.+++....
T Consensus 263 ----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 263 ----TLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp ----EEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred ----eeeccCCCCcccccceECCCCCEEEEEEec
Confidence 111122222345556788889888776544
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=147.31 Aligned_cols=209 Identities=17% Similarity=0.191 Sum_probs=123.4
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcC-hHhHHHHHHHHHHHcCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN-TFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~ 594 (758)
.|.||++||..+.. ..|......|.++||.|+.+|+||+|....... ..... -.+|+.+++++|.+.+.
T Consensus 16 ~~~vvllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~GhG~s~~~~~-----~~~~~~~~~d~~~~~~~l~~~~~--- 85 (247)
T 1tqh_A 16 ERAVLLLHGFTGNS--ADVRMLGRFLESKGYTCHAPIYKGHGVPPEELV-----HTGPDDWWQDVMNGYEFLKNKGY--- 85 (247)
T ss_dssp SCEEEEECCTTCCT--HHHHHHHHHHHHTTCEEEECCCTTSSSCHHHHT-----TCCHHHHHHHHHHHHHHHHHHTC---
T ss_pred CcEEEEECCCCCCh--HHHHHHHHHHHHCCCEEEecccCCCCCCHHHhc-----CCCHHHHHHHHHHHHHHHHHcCC---
Confidence 47899999955433 235555667778899999999999996432210 01111 13456666777776653
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEc-CCccch-hhcc-------CC---CCCCCChhh----hhccC-CC-CC
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA-VPFVDV-LTTM-------LD---PTIPLTTAE----WEEWG-DP-WK 656 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~-~~~~d~-~~~~-------~~---~~~~~~~~~----~~e~g-~p-~~ 656 (758)
+++.++|+|+||.+++.++.++| ++++|+. +|.... .... .. ......... ...+. .+ ..
T Consensus 86 ~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (247)
T 1tqh_A 86 EKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKT 163 (247)
T ss_dssp CCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTT
T ss_pred CeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHHHhhcccccchHHHHhhhhcccCCCHHH
Confidence 68999999999999999999998 7777653 433210 0000 00 000000000 00000 00 00
Q ss_pred HHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCC-hHHHHHH
Q 004368 657 EEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG-RFERLRE 735 (758)
Q Consensus 657 ~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~ 735 (758)
-..+..+. .+....+.++++| +|+++|++|..||+..++++++++.. ...++++++ ++||..... ..+.+.+
T Consensus 164 ~~~~~~~~-~~~~~~l~~i~~P-~Lii~G~~D~~~p~~~~~~~~~~~~~--~~~~~~~~~---~~gH~~~~e~~~~~~~~ 236 (247)
T 1tqh_A 164 LKALQELI-ADVRDHLDLIYAP-TFVVQARHDEMINPDSANIIYNEIES--PVKQIKWYE---QSGHVITLDQEKDQLHE 236 (247)
T ss_dssp HHHHHHHH-HHHHHTGGGCCSC-EEEEEETTCSSSCTTHHHHHHHHCCC--SSEEEEEET---TCCSSGGGSTTHHHHHH
T ss_pred HHHHHHHH-HHHHhhcccCCCC-EEEEecCCCCCCCcchHHHHHHhcCC--CceEEEEeC---CCceeeccCccHHHHHH
Confidence 11111110 1223456677888 99999999999999999988877643 124566675 999986433 2333433
Q ss_pred HHHHHHHHHH
Q 004368 736 AAFTYTFLMR 745 (758)
Q Consensus 736 ~~~~~~fl~~ 745 (758)
. +.+||.+
T Consensus 237 ~--i~~Fl~~ 244 (247)
T 1tqh_A 237 D--IYAFLES 244 (247)
T ss_dssp H--HHHHHHH
T ss_pred H--HHHHHHh
Confidence 2 5788875
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-14 Score=147.08 Aligned_cols=230 Identities=19% Similarity=0.191 Sum_probs=130.7
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCC-ccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCC
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSY-EICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 572 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~-~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~ 572 (758)
.+|.++.... . ++.|.||++||.. +......|......|.+ +|.|+.+|+||+|.... ...
T Consensus 23 ~~g~~l~y~~---~------g~g~~vvllHG~~~~~~~~~~~~~~~~~L~~-~~~vi~~Dl~G~G~S~~--------~~~ 84 (296)
T 1j1i_A 23 AGGVETRYLE---A------GKGQPVILIHGGGAGAESEGNWRNVIPILAR-HYRVIAMDMLGFGKTAK--------PDI 84 (296)
T ss_dssp ETTEEEEEEE---E------CCSSEEEEECCCSTTCCHHHHHTTTHHHHTT-TSEEEEECCTTSTTSCC--------CSS
T ss_pred ECCEEEEEEe---c------CCCCeEEEECCCCCCcchHHHHHHHHHHHhh-cCEEEEECCCCCCCCCC--------CCC
Confidence 4787765431 1 2247899999963 22222234444555554 59999999999987641 011
Q ss_pred cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc--CCCC--CCCChhhh
Q 004368 573 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM--LDPT--IPLTTAEW 648 (758)
Q Consensus 573 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~--~~~~--~~~~~~~~ 648 (758)
..+++++.+.+..+++.-.. .+++.++|+|+||.+++.++.++|++++++|+.+|........ .... .......+
T Consensus 85 ~~~~~~~~~dl~~~l~~l~~-~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (296)
T 1j1i_A 85 EYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGM 163 (296)
T ss_dssp CCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcccCCchHH
Confidence 23456666555544443212 2689999999999999999999999999999988754211000 0000 00000000
Q ss_pred ----hcc-CCC--CCHH----------------HHHH-HHh-------cCcccccCCCCCCeEEEeccCCCCCCCChHHH
Q 004368 649 ----EEW-GDP--WKEE----------------FYFY-MKS-------YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPA 697 (758)
Q Consensus 649 ----~e~-g~p--~~~~----------------~~~~-l~~-------~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~ 697 (758)
..+ .++ ..++ .+.. +.. ......+.++++| +|+++|++|..||+..+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~Lii~G~~D~~~~~~~~~ 242 (296)
T 1j1i_A 164 VHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVP-TLVVQGKDDKVVPVETAY 242 (296)
T ss_dssp HHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSC-EEEEEETTCSSSCHHHHH
T ss_pred HHHHHHhccCcccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCC-EEEEEECCCcccCHHHHH
Confidence 000 111 0111 0110 000 1122345667888 999999999999998888
Q ss_pred HHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 004368 698 KFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPS 752 (758)
Q Consensus 698 ~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 752 (758)
++++.+. ..++++++ ++||.......+.+.+ .+.+||.++++.++.
T Consensus 243 ~~~~~~~----~~~~~~i~---~~gH~~~~e~p~~~~~--~i~~fl~~~~~~~~~ 288 (296)
T 1j1i_A 243 KFLDLID----DSWGYIIP---HCGHWAMIEHPEDFAN--ATLSFLSLRVDITPA 288 (296)
T ss_dssp HHHHHCT----TEEEEEES---SCCSCHHHHSHHHHHH--HHHHHHHHC------
T ss_pred HHHHHCC----CCEEEEEC---CCCCCchhcCHHHHHH--HHHHHHhccCCcCch
Confidence 8776653 23556665 8999754333333333 367899999877654
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-14 Score=147.55 Aligned_cols=105 Identities=21% Similarity=0.140 Sum_probs=73.3
Q ss_pred CEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCc
Q 004368 517 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 596 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 596 (758)
|.||++||+++.... |......++++||.|+.+|+||+|.+...- ....+++++.+.+..+++.- .+.++
T Consensus 29 ~~vvllHG~~~~~~~--~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~dl~~~~~~l-~~~~~ 98 (293)
T 1mtz_A 29 AKLMTMHGGPGMSHD--YLLSLRDMTKEGITVLFYDQFGCGRSEEPD-------QSKFTIDYGVEEAEALRSKL-FGNEK 98 (293)
T ss_dssp EEEEEECCTTTCCSG--GGGGGGGGGGGTEEEEEECCTTSTTSCCCC-------GGGCSHHHHHHHHHHHHHHH-HTTCC
T ss_pred CeEEEEeCCCCcchh--HHHHHHHHHhcCcEEEEecCCCCccCCCCC-------CCcccHHHHHHHHHHHHHHh-cCCCc
Confidence 789999997665432 223344567889999999999998764321 11123444444444333321 02268
Q ss_pred EEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccc
Q 004368 597 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 631 (758)
Q Consensus 597 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 631 (758)
+.++|+|+||.++..++.++|++++++|+.+|...
T Consensus 99 ~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~ 133 (293)
T 1mtz_A 99 VFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSS 133 (293)
T ss_dssp EEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSB
T ss_pred EEEEEecHHHHHHHHHHHhCchhhheEEecCCccC
Confidence 99999999999999999999999999999988755
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=147.87 Aligned_cols=212 Identities=14% Similarity=0.135 Sum_probs=132.3
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
+..|+||++||..+.. ..|......| .++|.|+.+|+||+|.+... .....+++++.+.+..+++.- .
T Consensus 13 ~~~~~vvllHG~~~~~--~~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l--~ 80 (268)
T 3v48_A 13 ADAPVVVLISGLGGSG--SYWLPQLAVL-EQEYQVVCYDQRGTGNNPDT-------LAEDYSIAQMAAELHQALVAA--G 80 (268)
T ss_dssp TTCCEEEEECCTTCCG--GGGHHHHHHH-HTTSEEEECCCTTBTTBCCC-------CCTTCCHHHHHHHHHHHHHHT--T
T ss_pred CCCCEEEEeCCCCccH--HHHHHHHHHH-hhcCeEEEECCCCCCCCCCC-------ccccCCHHHHHHHHHHHHHHc--C
Confidence 3468999999965443 3355555555 56799999999999865421 112346677777776666542 2
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc----------CC--------CCCC--CChhhh-h---
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM----------LD--------PTIP--LTTAEW-E--- 649 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~----------~~--------~~~~--~~~~~~-~--- 649 (758)
.+++.++|+|+||.+++.++.++|++++++|+..+........ .. ...+ .....| .
T Consensus 81 ~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (268)
T 3v48_A 81 IEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARA 160 (268)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTTH
T ss_pred CCCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhhhccc
Confidence 3689999999999999999999999999999887743211000 00 0000 000000 0
Q ss_pred ---------cc-CCCCCHH---HHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEE
Q 004368 650 ---------EW-GDPWKEE---FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 716 (758)
Q Consensus 650 ---------e~-g~p~~~~---~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 716 (758)
.. ..+.... .+..+...+....+.++++| +||++|++|..+|+..++++++.+.. .++++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P-~Lii~G~~D~~~p~~~~~~l~~~~p~----~~~~~~~ 235 (268)
T 3v48_A 161 PRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCP-VQIICASDDLLVPTACSSELHAALPD----SQKMVMP 235 (268)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSC-EEEEEETTCSSSCTHHHHHHHHHCSS----EEEEEES
T ss_pred ccchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCC-eEEEEeCCCcccCHHHHHHHHHhCCc----CeEEEeC
Confidence 00 0000001 11122333444556677898 99999999999999988888776642 3456665
Q ss_pred ecCCCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 004368 717 CELGAGHFSKSGRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 717 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 747 (758)
++||.......+.+.+. +.+||.+.+
T Consensus 236 ---~~GH~~~~e~p~~~~~~--i~~fl~~~~ 261 (268)
T 3v48_A 236 ---YGGHACNVTDPETFNAL--LLNGLASLL 261 (268)
T ss_dssp ---SCCTTHHHHCHHHHHHH--HHHHHHHHH
T ss_pred ---CCCcchhhcCHHHHHHH--HHHHHHHhc
Confidence 89997654444444443 567887654
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=143.51 Aligned_cols=188 Identities=16% Similarity=0.171 Sum_probs=120.8
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHH----Hc
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLI----KN 589 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~----~~ 589 (758)
++.|+||++||..+.... |. ....|+ +||.|+.+|+||.|.... ....+++++.+.+..++ .+
T Consensus 14 ~~~~~vv~~hG~~~~~~~--~~-~~~~l~-~g~~v~~~d~~g~g~s~~---------~~~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 3e0x_A 14 KSPNTLLFVHGSGCNLKI--FG-ELEKYL-EDYNCILLDLKGHGESKG---------QCPSTVYGYIDNVANFITNSEVT 80 (245)
T ss_dssp TCSCEEEEECCTTCCGGG--GT-TGGGGC-TTSEEEEECCTTSTTCCS---------CCCSSHHHHHHHHHHHHHHCTTT
T ss_pred CCCCEEEEEeCCcccHHH--HH-HHHHHH-hCCEEEEecCCCCCCCCC---------CCCcCHHHHHHHHHHHHHhhhhH
Confidence 357899999997655433 43 334444 899999999999987641 12234566666655555 11
Q ss_pred CCCCCCcEEEEEeChhHHHHHHHHhh-CCCceeEEEEcCCccchhhc-------cCCCCCCC---------Chhhh-hcc
Q 004368 590 CYCTKEKLCIEGRSAGGLLIGAVLNM-RPDLFKAAVAAVPFVDVLTT-------MLDPTIPL---------TTAEW-EEW 651 (758)
Q Consensus 590 ~~~d~~~i~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~~~~d~~~~-------~~~~~~~~---------~~~~~-~e~ 651 (758)
.... ++.++|+|+||.++..++.+ +|+ ++++|+.+|..+.... +....... ....+ ..+
T Consensus 81 ~~~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (245)
T 3e0x_A 81 KHQK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSEKY 157 (245)
T ss_dssp TTCS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSHHHHHH
T ss_pred hhcC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchHHHHHH
Confidence 1223 99999999999999999999 999 9999999997664110 00000000 00000 000
Q ss_pred -CCC-CCHH----HHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCC
Q 004368 652 -GDP-WKEE----FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 652 -g~p-~~~~----~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
... .++. .+..+...+....+.++++| +|+++|++|..|++..+.++++.+. ..++++++ ++||..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~---~~gH~~ 229 (245)
T 3e0x_A 158 FETLEKDPDIMINDLIACKLIDLVDNLKNIDIP-VKAIVAKDELLTLVEYSEIIKKEVE----NSELKIFE---TGKHFL 229 (245)
T ss_dssp HTTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSC-EEEEEETTCSSSCHHHHHHHHHHSS----SEEEEEES---SCGGGH
T ss_pred HHHHhcCcHHHHHHHHHhccccHHHHHHhCCCC-EEEEEeCCCCCCCHHHHHHHHHHcC----CceEEEeC---CCCcce
Confidence 000 0111 12223445566667777888 9999999999999998888877764 24566665 899964
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=139.66 Aligned_cols=180 Identities=16% Similarity=0.159 Sum_probs=118.6
Q ss_pred CCEEEEecCCCccCCCCCCChHHH-HHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRL-SLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~-~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
.|+||++||..+... ..|..... .|+++||.|+.+|+|.++. .+++++.+.+..+++.- .
T Consensus 4 ~p~vv~~HG~~~~~~-~~~~~~~~~~l~~~g~~v~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~---~ 64 (192)
T 1uxo_A 4 TKQVYIIHGYRASST-NHWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQHTL---H 64 (192)
T ss_dssp CCEEEEECCTTCCTT-STTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGGGC---C
T ss_pred CCEEEEEcCCCCCcc-hhHHHHHHHHHHhCCcEEEEecCCCCCC---------------CCHHHHHHHHHHHHHhc---c
Confidence 588999999655433 13555554 5778999999999992221 13566666665555442 5
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCC--ceeEEEEcCCccchhhccCCCCCCCChhhhhccC-CCCCHHHHHHHHhcCcccc
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPD--LFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWG-DPWKEEFYFYMKSYSPVDN 671 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~--~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g-~p~~~~~~~~l~~~sp~~~ 671 (758)
+++.++|+|+||.+++.++.++|+ +++++|+.+|+...... . .....|. .+.+. . .
T Consensus 65 ~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~-----~----~~~~~~~~~~~~~---~---------~ 123 (192)
T 1uxo_A 65 ENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPT-----L----QMLDEFTQGSFDH---Q---------K 123 (192)
T ss_dssp TTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTT-----C----GGGGGGTCSCCCH---H---------H
T ss_pred CCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCcccc-----c----hhhhhhhhcCCCH---H---------H
Confidence 899999999999999999999999 99999999987553211 1 0111221 12221 1 1
Q ss_pred cCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 004368 672 VKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 672 i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 747 (758)
+.++..| +|+++|++|..||+.++.++++.+ +.+++.++ ++||.........+.+ ..+||.+.+
T Consensus 124 ~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~---~~gH~~~~~~~~~~~~---~~~~l~~~l 187 (192)
T 1uxo_A 124 IIESAKH-RAVIASKDDQIVPFSFSKDLAQQI-----DAALYEVQ---HGGHFLEDEGFTSLPI---VYDVLTSYF 187 (192)
T ss_dssp HHHHEEE-EEEEEETTCSSSCHHHHHHHHHHT-----TCEEEEET---TCTTSCGGGTCSCCHH---HHHHHHHHH
T ss_pred HHhhcCC-EEEEecCCCCcCCHHHHHHHHHhc-----CceEEEeC---CCcCcccccccccHHH---HHHHHHHHH
Confidence 2223455 999999999999999998888776 24566665 8999874332222222 345555554
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.8e-14 Score=144.92 Aligned_cols=225 Identities=14% Similarity=0.155 Sum_probs=127.2
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCC-ccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccC
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSY-EICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK 571 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~-~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~ 571 (758)
..+|.++.... .+. ...|+||++||.. +......|......|.+ +|.|+.+|+||+|.+... ..
T Consensus 13 ~~~g~~l~y~~---~g~----~g~p~vvllHG~~~~~~~~~~~~~~~~~L~~-~~~vi~~D~~G~G~S~~~-------~~ 77 (285)
T 1c4x_A 13 PSGTLASHALV---AGD----PQSPAVVLLHGAGPGAHAASNWRPIIPDLAE-NFFVVAPDLIGFGQSEYP-------ET 77 (285)
T ss_dssp CCTTSCEEEEE---ESC----TTSCEEEEECCCSTTCCHHHHHGGGHHHHHT-TSEEEEECCTTSTTSCCC-------SS
T ss_pred EECCEEEEEEe---cCC----CCCCEEEEEeCCCCCCcchhhHHHHHHHHhh-CcEEEEecCCCCCCCCCC-------CC
Confidence 45777765432 110 1247799999953 22222235555555654 599999999999876431 11
Q ss_pred CcChHhHH----HHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh-----------cc
Q 004368 572 KKNTFTDF----IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT-----------TM 636 (758)
Q Consensus 572 ~~~~~~D~----~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~-----------~~ 636 (758)
...+++++ .+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+.+|...... .+
T Consensus 78 ~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 155 (285)
T 1c4x_A 78 YPGHIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFY 155 (285)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGG
T ss_pred cccchhhhhhhHHHHHHHHHHH--hCCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHHHHHHHh
Confidence 12345555 4444443332 1237899999999999999999999999999999887532100 00
Q ss_pred CCCCCCCChhhhhcc-CCCC-----------------CHHHHHHHHh------------cCcccccCCCCCCeEEEeccC
Q 004368 637 LDPTIPLTTAEWEEW-GDPW-----------------KEEFYFYMKS------------YSPVDNVKAQNYPHILVTAGL 686 (758)
Q Consensus 637 ~~~~~~~~~~~~~e~-g~p~-----------------~~~~~~~l~~------------~sp~~~i~~~~~P~~Li~~G~ 686 (758)
..............+ .++. +++....+.. ..+...+.++++| +|+++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~ 234 (285)
T 1c4x_A 156 ADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHD-VLVFHGR 234 (285)
T ss_dssp GSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSC-EEEEEET
T ss_pred ccccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhccCCCC-EEEEEeC
Confidence 000000000000000 1110 1111111110 0122345667888 9999999
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 687 NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 687 ~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
+|..||+..++++++.+. ..++++++ ++||.......+.+.+. +.+||.
T Consensus 235 ~D~~~p~~~~~~~~~~~~----~~~~~~i~---~~gH~~~~e~p~~~~~~--i~~fl~ 283 (285)
T 1c4x_A 235 QDRIVPLDTSLYLTKHLK----HAELVVLD---RCGHWAQLERWDAMGPM--LMEHFR 283 (285)
T ss_dssp TCSSSCTHHHHHHHHHCS----SEEEEEES---SCCSCHHHHSHHHHHHH--HHHHHH
T ss_pred CCeeeCHHHHHHHHHhCC----CceEEEeC---CCCcchhhcCHHHHHHH--HHHHHh
Confidence 999999998888877653 34566665 89997533233333322 456764
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-14 Score=145.66 Aligned_cols=210 Identities=11% Similarity=0.077 Sum_probs=125.4
Q ss_pred CCEEEEecCC-CccCCCCCCChHH-HHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 516 DPLLLYGYGS-YEICNDPAFNSSR-LSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 516 ~P~vl~~hGg-~~~~~~~~~~~~~-~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
.|.||++||. ++......|.... ..|.+ +|.|+.+|+||+|.+... .....+++++.+.+..++++- +
T Consensus 33 g~~vvllHG~~~~~~~~~~w~~~~~~~L~~-~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l--~ 102 (286)
T 2puj_A 33 GETVIMLHGGGPGAGGWSNYYRNVGPFVDA-GYRVILKDSPGFNKSDAV-------VMDEQRGLVNARAVKGLMDAL--D 102 (286)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHHHT-TCEEEEECCTTSTTSCCC-------CCSSCHHHHHHHHHHHHHHHT--T
T ss_pred CCcEEEECCCCCCCCcHHHHHHHHHHHHhc-cCEEEEECCCCCCCCCCC-------CCcCcCHHHHHHHHHHHHHHh--C
Confidence 4789999996 3222223355555 56655 599999999999876431 111345677666665555542 3
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCC-CC-----------CCCC--hhhh-hcc-CCC--C
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD-PT-----------IPLT--TAEW-EEW-GDP--W 655 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~-~~-----------~~~~--~~~~-~e~-g~p--~ 655 (758)
.+++.++|+|+||.+++.++.++|++++++|+..|.......... .. .+.. ...+ ..+ .++ .
T Consensus 103 ~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (286)
T 2puj_A 103 IDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLI 182 (286)
T ss_dssp CCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGC
T ss_pred CCceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcCCccC
Confidence 478999999999999999999999999999998875321000000 00 0000 0000 000 011 0
Q ss_pred C--------------HHHHHHHH---------hcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCce
Q 004368 656 K--------------EEFYFYMK---------SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 712 (758)
Q Consensus 656 ~--------------~~~~~~l~---------~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~ 712 (758)
. ++....+. ..+....+.++++| +|+++|++|..+|+..++++++.+. ..++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~Lii~G~~D~~~p~~~~~~~~~~~~----~~~~ 257 (286)
T 2puj_A 183 TEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAK-TFITWGRDDRFVPLDHGLKLLWNID----DARL 257 (286)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSC-EEEEEETTCSSSCTHHHHHHHHHSS----SEEE
T ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhhcCCC-EEEEEECCCCccCHHHHHHHHHHCC----CCeE
Confidence 1 11111111 11223455667888 9999999999999998888877654 2456
Q ss_pred EEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 713 LLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 713 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
++++ ++||.......+.+.+. +.+||.+
T Consensus 258 ~~i~---~~gH~~~~e~p~~~~~~--i~~fl~~ 285 (286)
T 2puj_A 258 HVFS---KCGAWAQWEHADEFNRL--VIDFLRH 285 (286)
T ss_dssp EEES---SCCSCHHHHTHHHHHHH--HHHHHHH
T ss_pred EEeC---CCCCCccccCHHHHHHH--HHHHHhc
Confidence 6665 89997543333333332 4577754
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.8e-14 Score=144.43 Aligned_cols=226 Identities=15% Similarity=0.100 Sum_probs=133.8
Q ss_pred EeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCch-hHHhccc
Q 004368 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR-QWYENGK 568 (758)
Q Consensus 490 ~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~-~~~~~~~ 568 (758)
.+...+|.++.....-+ ...|.||++||..+.... .|...+..| ++||.|+.+|.||+|.+.. .
T Consensus 6 ~~~~~~g~~l~~~~~G~-------~~~~~vvllHG~~~~~~~-~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~~------ 70 (286)
T 2yys_A 6 GYVPVGEAELYVEDVGP-------VEGPALFVLHGGPGGNAY-VLREGLQDY-LEGFRVVYFDQRGSGRSLELP------ 70 (286)
T ss_dssp EEEECSSCEEEEEEESC-------TTSCEEEEECCTTTCCSH-HHHHHHGGG-CTTSEEEEECCTTSTTSCCCC------
T ss_pred eEEeECCEEEEEEeecC-------CCCCEEEEECCCCCcchh-HHHHHHHHh-cCCCEEEEECCCCCCCCCCCc------
Confidence 34456787776543211 134789999997654330 244444455 5699999999999997643 1
Q ss_pred ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh---ccC--C--CCC
Q 004368 569 FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT---TML--D--PTI 641 (758)
Q Consensus 569 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~---~~~--~--~~~ 641 (758)
......+++++.+.+..+++.- ..+++.++|||+||.++..++.++|+ ++++|+..|..+... ... . ...
T Consensus 71 ~~~~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 147 (286)
T 2yys_A 71 QDPRLFTVDALVEDTLLLAEAL--GVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNFPWLAARLAEAAGLAPL 147 (286)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBHHHHHHHHHHHTTCCCC
T ss_pred cCcccCcHHHHHHHHHHHHHHh--CCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCcHHHHHHHHHHhccccc
Confidence 0001234566666555555442 34689999999999999999999999 999999888643211 000 0 000
Q ss_pred C-----C-------Chhhh-hc--c----------------C---CCCCHHHH--HHHHhcCcccccCCCCCCeEEEecc
Q 004368 642 P-----L-------TTAEW-EE--W----------------G---DPWKEEFY--FYMKSYSPVDNVKAQNYPHILVTAG 685 (758)
Q Consensus 642 ~-----~-------~~~~~-~e--~----------------g---~p~~~~~~--~~l~~~sp~~~i~~~~~P~~Li~~G 685 (758)
. + ....+ .. + . .+.....+ ..+..++....+.++++| +|+++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lvi~G 226 (286)
T 2yys_A 148 PDPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYTPYLTPERRP-LYVLVG 226 (286)
T ss_dssp SCHHHHHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCGGGCCCCSSC-EEEEEE
T ss_pred hhHHHHHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChhhhhhhcCCC-EEEEEe
Confidence 0 0 00000 00 0 0 00000110 111122233456677898 999999
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 686 ~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
++|..+++. ++++++ +.. .++++++ ++||.......+.+.+ .+.+||.+
T Consensus 227 ~~D~~~~~~-~~~~~~-~~~----~~~~~i~---~~gH~~~~e~p~~~~~--~i~~fl~~ 275 (286)
T 2yys_A 227 ERDGTSYPY-AEEVAS-RLR----APIRVLP---EAGHYLWIDAPEAFEE--AFKEALAA 275 (286)
T ss_dssp TTCTTTTTT-HHHHHH-HHT----CCEEEET---TCCSSHHHHCHHHHHH--HHHHHHHT
T ss_pred CCCCcCCHh-HHHHHh-CCC----CCEEEeC---CCCCCcChhhHHHHHH--HHHHHHHh
Confidence 999999998 888877 653 3566775 8999754333333333 25678765
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=141.73 Aligned_cols=223 Identities=17% Similarity=0.157 Sum_probs=132.0
Q ss_pred EeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccc
Q 004368 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 569 (758)
Q Consensus 490 ~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~ 569 (758)
.+.+.||.+|..... + .+..|+||++||..... ..|......|. ++|.|+.+|.||+|.+...
T Consensus 8 ~~~~~~g~~l~y~~~---G----~~~~p~lvl~hG~~~~~--~~w~~~~~~L~-~~~~vi~~D~rG~G~S~~~------- 70 (266)
T 3om8_A 8 FLATSDGASLAYRLD---G----AAEKPLLALSNSIGTTL--HMWDAQLPALT-RHFRVLRYDARGHGASSVP------- 70 (266)
T ss_dssp EEECTTSCEEEEEEE---S----CTTSCEEEEECCTTCCG--GGGGGGHHHHH-TTCEEEEECCTTSTTSCCC-------
T ss_pred EEeccCCcEEEEEec---C----CCCCCEEEEeCCCccCH--HHHHHHHHHhh-cCcEEEEEcCCCCCCCCCC-------
Confidence 345679988765422 1 12358999999954432 33656556665 5899999999999977531
Q ss_pred cCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchh---------hccCC-C
Q 004368 570 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVL---------TTMLD-P 639 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~---------~~~~~-~ 639 (758)
....+++++.+.+..+++.- ..+++.++|+|+||.++..++.++|++++++|+..+..-.. ..... .
T Consensus 71 -~~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 147 (266)
T 3om8_A 71 -PGPYTLARLGEDVLELLDAL--EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAE 147 (266)
T ss_dssp -CSCCCHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHHHHHCS
T ss_pred -CCCCCHHHHHHHHHHHHHHh--CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHHHHccc
Confidence 12235566665555544432 23689999999999999999999999999999876532100 00000 0
Q ss_pred CCCCChh-hhhcc-------CCCC------------CHHH----HHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChH
Q 004368 640 TIPLTTA-EWEEW-------GDPW------------KEEF----YFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSE 695 (758)
Q Consensus 640 ~~~~~~~-~~~e~-------g~p~------------~~~~----~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~ 695 (758)
....... ....| .++. .++. +..+...+....+.++++| +||++|++|..+|+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P-~Lvi~G~~D~~~~~~~ 226 (266)
T 3om8_A 148 DMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERP-TLVIAGAYDTVTAASH 226 (266)
T ss_dssp SSHHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSC-EEEEEETTCSSSCHHH
T ss_pred cHHHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCC-EEEEEeCCCCCCCHHH
Confidence 0000000 00000 0110 0110 1112222233456677898 9999999999999988
Q ss_pred HHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHH
Q 004368 696 PAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 743 (758)
Q Consensus 696 ~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 743 (758)
++.+++.+.. .++++++ +||.......+.+.+. +.+||
T Consensus 227 ~~~l~~~ip~----a~~~~i~----~gH~~~~e~p~~~~~~--i~~Fl 264 (266)
T 3om8_A 227 GELIAASIAG----ARLVTLP----AVHLSNVEFPQAFEGA--VLSFL 264 (266)
T ss_dssp HHHHHHHSTT----CEEEEES----CCSCHHHHCHHHHHHH--HHHHH
T ss_pred HHHHHHhCCC----CEEEEeC----CCCCccccCHHHHHHH--HHHHh
Confidence 8888776543 3556652 6897543344444332 45665
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-12 Score=153.65 Aligned_cols=244 Identities=12% Similarity=0.143 Sum_probs=150.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCC---ceeeccc-cCcceeEEEecCC-eEEEEEeCCCCCCceEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG---TPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g---~~~~~~~-~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~ 266 (758)
.+..+.|||||++|+|... .+|+++|++++ +...+.. ......++||||| .|+|.+.+ +|+++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~------~i~~~ 177 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR------NLWVI 177 (741)
T ss_dssp ESCCCEECTTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT------EEEEE
T ss_pred CcceeEECCCCCEEEEEeC------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCC------cEEEE
Confidence 4678899999999999986 47999999998 6555432 2335669999999 78888632 69999
Q ss_pred EcCCCCCCcEEEeeecCCce---------------eeEEEEcCCCcEEEEEecCC-------------------------
Q 004368 267 KLEADQSNDICLYHEKDDIY---------------SLGLQASESKKFLFIASESK------------------------- 306 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~---------------~~~~~~S~Dg~~l~~~s~~~------------------------- 306 (758)
++.++ +...+........ ...+.|||||++|++.+.+.
T Consensus 178 d~~~g--~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 178 DLASG--RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp ETTTT--EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred ecCCC--CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 98775 2233332221111 13578999999999876432
Q ss_pred -----cceEEEEEeCCC-CCceEEeecc---ccce-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCC
Q 004368 307 -----ITRFVFYLDVSK-PEELRVLTPR---VVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE 376 (758)
Q Consensus 307 -----~~~~l~~~d~~~-~~~~~~l~~~---~~~~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~ 376 (758)
....||++|+++ ++ .+.+... ...+ ...| |||++|++.....+.....|+.+|+++. ....++....
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~ 332 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETS 332 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEEC
T ss_pred CCCCCCeeEEEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCC
Confidence 223899999988 76 5444322 1111 2349 9999999887533245688999998763 3333333221
Q ss_pred Cc---ee--eeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCC-CcccCCcEEEEEEec
Q 004368 377 SV---KL--QDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPS-ESVFSSRILRFHYSS 450 (758)
Q Consensus 377 ~~---~~--~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~-~~~~d~~~l~~~~sS 450 (758)
.. .+ ..|+++++ +++....+|..+|+.++++ |+ ...++.. ...+... .++++++.+++..+.
T Consensus 333 ~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~--~~-~~~l~~~--------~~~v~~~~~~s~dg~~l~~~~~~ 400 (741)
T 2ecf_A 333 PTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSK--GK-AAALTHG--------NWSVDELLAVDEKAGLAYFRAGI 400 (741)
T ss_dssp SSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSS--SC-EEESCCS--------SSCEEEEEEEETTTTEEEEEECS
T ss_pred CCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCC--CC-eeeeeec--------ceEEEeEeEEeCCCCEEEEEEeC
Confidence 11 11 23444445 6666666776676666544 44 3222221 1122222 367788887766543
Q ss_pred CCC--CCEEEEEECCCC
Q 004368 451 LRT--PPSVYDYDMDMG 465 (758)
Q Consensus 451 ~~~--P~~i~~~d~~~~ 465 (758)
.. -..+|.++..++
T Consensus 401 -~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 401 -ESARESQIYAVPLQGG 416 (741)
T ss_dssp -SCTTCBEEEEEETTCC
T ss_pred -CCCceEEEEEEEcCCC
Confidence 33 345777776554
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-14 Score=143.54 Aligned_cols=211 Identities=15% Similarity=0.081 Sum_probs=124.3
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHH-cCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
+.|+||++||..+... .|......|++ +||.|+.+|+||.|.....- . .+++++.+.+..+++.- .+
T Consensus 20 ~~~~vv~lhG~~~~~~--~~~~~~~~l~~~~g~~v~~~d~~G~G~s~~~~--------~-~~~~~~~~~~~~~l~~~-~~ 87 (272)
T 3fsg_A 20 SGTPIIFLHGLSLDKQ--STCLFFEPLSNVGQYQRIYLDLPGMGNSDPIS--------P-STSDNVLETLIEAIEEI-IG 87 (272)
T ss_dssp CSSEEEEECCTTCCHH--HHHHHHTTSTTSTTSEEEEECCTTSTTCCCCS--------S-CSHHHHHHHHHHHHHHH-HT
T ss_pred CCCeEEEEeCCCCcHH--HHHHHHHHHhccCceEEEEecCCCCCCCCCCC--------C-CCHHHHHHHHHHHHHHH-hC
Confidence 4578999999654332 24444445555 69999999999998764321 1 34455555444433330 13
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCC-C--------CC--CCChh---hhhccCCCCCHHH
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD-P--------TI--PLTTA---EWEEWGDPWKEEF 659 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~-~--------~~--~~~~~---~~~e~g~p~~~~~ 659 (758)
.+++.++|+|+||.++..++.++|++++++|+.+|.......... . .. .+... .+........+..
T Consensus 88 ~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (272)
T 3fsg_A 88 ARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYFADFLSMNVIINNQA 167 (272)
T ss_dssp TCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECSCCCCCTTGGGHHHHHHHCSEESHHH
T ss_pred CCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhhhhhcccCHHHHHHHHHHhccCCCch
Confidence 478999999999999999999999999999998887532211100 0 00 00000 0000000001111
Q ss_pred -------------------HHHHHhc-----CcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEE
Q 004368 660 -------------------YFYMKSY-----SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 715 (758)
Q Consensus 660 -------------------~~~l~~~-----sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 715 (758)
...+... .+...+.++++| +|+++|++|..||+..+.++++.+. ..+++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~ 242 (272)
T 3fsg_A 168 WHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFP-FKIMVGRNDQVVGYQEQLKLINHNE----NGEIVLL 242 (272)
T ss_dssp HHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSC-EEEEEETTCTTTCSHHHHHHHTTCT----TEEEEEE
T ss_pred hHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCC-EEEEEeCCCCcCCHHHHHHHHHhcC----CCeEEEe
Confidence 1111111 111134666888 9999999999999998888776553 3456666
Q ss_pred EecCCCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 004368 716 KCELGAGHFSKSGRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 716 ~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 747 (758)
+ ++||.......+.+.+ .+.+||.+..
T Consensus 243 ~---~~gH~~~~~~~~~~~~--~i~~fl~~~~ 269 (272)
T 3fsg_A 243 N---RTGHNLMIDQREAVGF--HFDLFLDELN 269 (272)
T ss_dssp S---SCCSSHHHHTHHHHHH--HHHHHHHHHH
T ss_pred c---CCCCCchhcCHHHHHH--HHHHHHHHhh
Confidence 5 8999754333333332 2567887653
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-14 Score=147.14 Aligned_cols=234 Identities=14% Similarity=0.198 Sum_probs=134.6
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhc
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 566 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~ 566 (758)
++..+++.+| ++... .. .++.|+||++||..+.. ..|......|+++||.|+.+|+||.|.......
T Consensus 4 ~~~~~~~~~~-~~~~~----~~----~~~~~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~-- 70 (279)
T 4g9e_A 4 NYHELETSHG-RIAVR----ES----EGEGAPLLMIHGNSSSG--AIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAID-- 70 (279)
T ss_dssp EEEEEEETTE-EEEEE----EC----CCCEEEEEEECCTTCCG--GGGHHHHHSHHHHHEEEEEECCTTSTTSCCCSC--
T ss_pred EEEEEEcCCc-eEEEE----ec----CCCCCeEEEECCCCCch--hHHHHHHhHHHhcCCeEEeecCCCCCCCCCCCC--
Confidence 4455666666 34322 21 13468899999975543 335566667788899999999999987653100
Q ss_pred ccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc--CCCC----
Q 004368 567 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM--LDPT---- 640 (758)
Q Consensus 567 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~--~~~~---- 640 (758)
.....+++|+.+.+..+++. .+.+++.++|+|+||.++..++.++|+..+.+++..|........ ....
T Consensus 71 ---~~~~~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ 145 (279)
T 4g9e_A 71 ---PDRSYSMEGYADAMTEVMQQ--LGIADAVVFGWSLGGHIGIEMIARYPEMRGLMITGTPPVAREEVGQGFKSGPDMA 145 (279)
T ss_dssp ---HHHHSSHHHHHHHHHHHHHH--HTCCCCEEEEETHHHHHHHHHTTTCTTCCEEEEESCCCCCGGGHHHHBCCSTTGG
T ss_pred ---cccCCCHHHHHHHHHHHHHH--hCCCceEEEEECchHHHHHHHHhhCCcceeEEEecCCCCCCCccchhhccchhhh
Confidence 01123456666665555543 234689999999999999999999999555555555543221100 0000
Q ss_pred ----CCCChhh---h-h-ccCCCCCHHHHHHHHhc------------------CcccccCCCCCCeEEEeccCCCCCCCC
Q 004368 641 ----IPLTTAE---W-E-EWGDPWKEEFYFYMKSY------------------SPVDNVKAQNYPHILVTAGLNDPRVMY 693 (758)
Q Consensus 641 ----~~~~~~~---~-~-e~g~p~~~~~~~~l~~~------------------sp~~~i~~~~~P~~Li~~G~~D~~V~~ 693 (758)
..+.... + . .++.+..+...+.+... +....+.++++| +|+++|++|..||+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~l~i~g~~D~~~~~ 224 (279)
T 4g9e_A 146 LAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEAQLP-IAVVNGRDEPFVEL 224 (279)
T ss_dssp GGGCSCCCHHHHHHHHHHHHCSSCCHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHCCSC-EEEEEETTCSSBCH
T ss_pred hcCcccccHHHHHHHHHhhccCcccHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHhcCCC-EEEEEcCCCcccch
Confidence 0000000 0 0 11222222222222211 112224455788 99999999999998
Q ss_pred hHHHHHH-HHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 694 SEPAKFV-AKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 694 ~~~~~~~-~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
..+.+++ +.+. ..++++++ ++||.......+.+.+ .+.+||.+.-.
T Consensus 225 ~~~~~~~~~~~~----~~~~~~~~---~~gH~~~~~~p~~~~~--~i~~fl~~~~~ 271 (279)
T 4g9e_A 225 DFVSKVKFGNLW----EGKTHVID---NAGHAPFREAPAEFDA--YLARFIRDCTQ 271 (279)
T ss_dssp HHHTTCCCSSBG----GGSCEEET---TCCSCHHHHSHHHHHH--HHHHHHHHHHS
T ss_pred HHHHHHhhccCC----CCeEEEEC---CCCcchHHhCHHHHHH--HHHHHHHHhhh
Confidence 7776665 3222 34567776 8999754333333333 35778887654
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-14 Score=144.67 Aligned_cols=209 Identities=16% Similarity=0.128 Sum_probs=123.4
Q ss_pred CCEEEEecCCCccCC-CCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 516 DPLLLYGYGSYEICN-DPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
.|.||++||...... ...|......| ++||.|+.+|+||+|.+... .....+++++.+.+..++++- ..
T Consensus 25 g~~vvllHG~~~~~~~~~~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l--~~ 94 (282)
T 1iup_A 25 GQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGFGFTDRP-------ENYNYSKDSWVDHIIGIMDAL--EI 94 (282)
T ss_dssp SSEEEEECCCCTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCCC-------TTCCCCHHHHHHHHHHHHHHT--TC
T ss_pred CCeEEEECCCCCCccHHHHHHHHHHhh-ccCCEEEEECCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHh--CC
Confidence 467999999432221 11344444444 67999999999999876431 011235666666555555442 34
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh------ccCCCCCCCC-----------------hhhh---
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT------TMLDPTIPLT-----------------TAEW--- 648 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~------~~~~~~~~~~-----------------~~~~--- 648 (758)
+++.++|+|+||.+++.++.++|++++++|+.+|...... ..... .+.. ..++
T Consensus 95 ~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (282)
T 1iup_A 95 EKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGY-TPSIENMRNLLDIFAYDRSLVTDELARL 173 (282)
T ss_dssp CSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTC-CSCHHHHHHHHHHHCSSGGGCCHHHHHH
T ss_pred CceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcC-CCcHHHHHHHHHHhhcCcccCCHHHHHH
Confidence 7899999999999999999999999999998876532100 00000 0000 0000
Q ss_pred --hccCCCCCHHHHHHHHh---------c-CcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEE
Q 004368 649 --EEWGDPWKEEFYFYMKS---------Y-SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 716 (758)
Q Consensus 649 --~e~g~p~~~~~~~~l~~---------~-sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 716 (758)
.....+.....+..+.. . .+...+.++++| +|+++|++|..+|+..+.++++.+. ..++++++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~p~~~~~~~~~~~~----~~~~~~i~ 248 (282)
T 1iup_A 174 RYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNE-TLIIHGREDQVVPLSSSLRLGELID----RAQLHVFG 248 (282)
T ss_dssp HHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHTTCCSC-EEEEEETTCSSSCHHHHHHHHHHCT----TEEEEEES
T ss_pred HHhhccChHHHHHHHHHHhccccccccccccchhhhhhcCCC-EEEEecCCCCCCCHHHHHHHHHhCC----CCeEEEEC
Confidence 00011111111111100 0 011345677888 9999999999999988887776653 24566665
Q ss_pred ecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 717 CELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 717 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
++||.......+.+.+. +.+||.+
T Consensus 249 ---~~gH~~~~e~p~~~~~~--i~~fl~~ 272 (282)
T 1iup_A 249 ---RCGHWTQIEQTDRFNRL--VVEFFNE 272 (282)
T ss_dssp ---SCCSCHHHHSHHHHHHH--HHHHHHT
T ss_pred ---CCCCCccccCHHHHHHH--HHHHHhc
Confidence 89997543333333332 5678765
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-14 Score=142.89 Aligned_cols=205 Identities=13% Similarity=0.077 Sum_probs=123.6
Q ss_pred CCCCEEEEecCCCccCCCCCCC----hHHHHHHHcCcEEEEEecCCCCC--------------------CchhHHhcccc
Q 004368 514 GSDPLLLYGYGSYEICNDPAFN----SSRLSLLDRGFIFAIAQIRGGGE--------------------LGRQWYENGKF 569 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~----~~~~~l~~~G~~v~~~~~RG~g~--------------------~G~~~~~~~~~ 569 (758)
.+.|+||++||..+... .|. .....|.++||.|+.+|.|+... ....|...
T Consensus 3 ~~~~~vl~lHG~g~~~~--~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~w~~~--- 77 (243)
T 1ycd_A 3 VQIPKLLFLHGFLQNGK--VFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFYH--- 77 (243)
T ss_dssp CCCCEEEEECCTTCCHH--HHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEESSCC---
T ss_pred CcCceEEEeCCCCccHH--HHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCcccccC---
Confidence 35689999999544322 122 23345555699999999993221 11223221
Q ss_pred cCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCC------CceeEEEEcCCccchhhccCCCCCCC
Q 004368 570 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP------DLFKAAVAAVPFVDVLTTMLDPTIPL 643 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p------~~f~a~v~~~~~~d~~~~~~~~~~~~ 643 (758)
.......|+.+++++|.+.-..+..+++|+|+|+||.+++.++.+++ ..+++++..+++....... ..+-
T Consensus 78 -~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~---~~~~ 153 (243)
T 1ycd_A 78 -SEISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDP---EHPG 153 (243)
T ss_dssp -CSSGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECT---TSTT
T ss_pred -CCCcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCccc---cccc
Confidence 11123467777777776543234478999999999999999888642 2467777777764321110 0000
Q ss_pred ChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcC---CCCceEEEEecCC
Q 004368 644 TTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMK---TDDNILLFKCELG 720 (758)
Q Consensus 644 ~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~---~~~~~~~~~~~~~ 720 (758)
. ..+.. .+ ...+..+.++++| +|++||.+|+.||+.++.++++.+...+ .....++++ +
T Consensus 154 ~----~~~~~-----~~-----~~~~~~~~~~~~P-~l~i~G~~D~~vp~~~~~~~~~~~~~~~g~~~~~~~~~~~---~ 215 (243)
T 1ycd_A 154 E----LRITE-----KF-----RDSFAVKPDMKTK-MIFIYGASDQAVPSVRSKYLYDIYLKAQNGNKEKVLAYEH---P 215 (243)
T ss_dssp C----EEECG-----GG-----TTTTCCCTTCCCE-EEEEEETTCSSSCHHHHHHHHHHHHHHTTTCTTTEEEEEE---S
T ss_pred c----cccch-----hH-----HHhccCcccCCCC-EEEEEeCCCCccCHHHHHHHHHHhhhhccccccccEEEec---C
Confidence 0 00000 00 0122334556777 9999999999999999999999998752 112334444 7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 721 AGHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 721 ~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
+||...... . ....+.+||.+++..
T Consensus 216 ~gH~~~~~~-~---~~~~i~~fl~~~~~~ 240 (243)
T 1ycd_A 216 GGHMVPNKK-D---IIRPIVEQITSSLQE 240 (243)
T ss_dssp SSSSCCCCH-H---HHHHHHHHHHHHHC-
T ss_pred CCCcCCchH-H---HHHHHHHHHHHhhhh
Confidence 899875442 2 233467899988763
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=141.90 Aligned_cols=101 Identities=12% Similarity=0.080 Sum_probs=74.1
Q ss_pred CEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCc
Q 004368 517 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 596 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 596 (758)
|.||++||..+.. ..|...+..|+++||.|+.+|+||+|.+... ....+++++.+.+..+++. .+.++
T Consensus 24 ~pvvllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~--------~~~~~~~~~~~dl~~~l~~--l~~~~ 91 (279)
T 1hkh_A 24 QPVVLIHGYPLDG--HSWERQTRELLAQGYRVITYDRRGFGGSSKV--------NTGYDYDTFAADLHTVLET--LDLRD 91 (279)
T ss_dssp EEEEEECCTTCCG--GGGHHHHHHHHHTTEEEEEECCTTSTTSCCC--------SSCCSHHHHHHHHHHHHHH--HTCCS
T ss_pred CcEEEEcCCCchh--hHHhhhHHHHHhCCcEEEEeCCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cCCCc
Confidence 4589999965543 3466677788889999999999999976432 1123444444444443332 13468
Q ss_pred EEEEEeChhHHHHHHHHhhCCC-ceeEEEEcCCc
Q 004368 597 LCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAVPF 629 (758)
Q Consensus 597 i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~~~ 629 (758)
+.++|+|+||.+++.++.++|+ +++++|+.+++
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~ 125 (279)
T 1hkh_A 92 VVLVGFSMGTGELARYVARYGHERVAKLAFLASL 125 (279)
T ss_dssp EEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred eEEEEeChhHHHHHHHHHHcCccceeeEEEEccC
Confidence 9999999999999999999998 99999998874
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-13 Score=140.76 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=84.4
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHH-HHHHHcCcEEEEEecCCCCCCchhHHhcccccCC
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSR-LSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 572 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~-~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~ 572 (758)
.||.++..... + +...|.||++||..+.. ..|.... ..|.++||.|+.+|+||+|.+... . ....
T Consensus 8 ~~g~~l~y~~~---G----~~~~~~vvllHG~~~~~--~~w~~~~~~~L~~~G~~vi~~D~rG~G~S~~~--~---~~~~ 73 (298)
T 1q0r_A 8 SGDVELWSDDF---G----DPADPALLLVMGGNLSA--LGWPDEFARRLADGGLHVIRYDHRDTGRSTTR--D---FAAH 73 (298)
T ss_dssp ETTEEEEEEEE---S----CTTSCEEEEECCTTCCG--GGSCHHHHHHHHTTTCEEEEECCTTSTTSCCC--C---TTTS
T ss_pred cCCeEEEEEec---c----CCCCCeEEEEcCCCCCc--cchHHHHHHHHHhCCCEEEeeCCCCCCCCCCC--C---CCcC
Confidence 47877754422 1 11347899999965443 3466644 778888999999999999976530 0 0111
Q ss_pred cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc
Q 004368 573 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 573 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
..+++++.+.+..+++. .+.+++.++|+|+||.++..++.++|++++++|+..+..
T Consensus 74 ~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 129 (298)
T 1q0r_A 74 PYGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGG 129 (298)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred CcCHHHHHHHHHHHHHH--hCCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccC
Confidence 24556666655555443 234789999999999999999999999999999877643
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=141.23 Aligned_cols=209 Identities=14% Similarity=0.074 Sum_probs=124.4
Q ss_pred CCCC-eEEEEEEEeeccccccCCCCCEEEEecCC-CccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccccc
Q 004368 493 ASDG-TQIPICIVYRKNLVKLDGSDPLLLYGYGS-YEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 570 (758)
Q Consensus 493 s~dG-~~i~~~l~~p~~~~~~~~~~P~vl~~hGg-~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~ 570 (758)
..+| .++..... + +++.|.||++||. ++......|......|.++ |.|+.+|+||+|.+... .
T Consensus 19 ~~~g~~~l~y~~~---G----~g~~~~vvllHG~~pg~~~~~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~-------~ 83 (291)
T 2wue_A 19 DVDGPLKLHYHEA---G----VGNDQTVVLLHGGGPGAASWTNFSRNIAVLARH-FHVLAVDQPGYGHSDKR-------A 83 (291)
T ss_dssp ESSSEEEEEEEEE---C----TTCSSEEEEECCCCTTCCHHHHTTTTHHHHTTT-SEEEEECCTTSTTSCCC-------S
T ss_pred EeCCcEEEEEEec---C----CCCCCcEEEECCCCCccchHHHHHHHHHHHHhc-CEEEEECCCCCCCCCCC-------C
Confidence 3478 77764421 1 1334689999996 3322223455556666654 99999999999976431 1
Q ss_pred CCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc--------------
Q 004368 571 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-------------- 636 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~-------------- 636 (758)
....+++++.+.+..++++- +.+++.++|+|+||.++..++.++|++++++|+.+|........
T Consensus 84 ~~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (291)
T 2wue_A 84 EHGQFNRYAAMALKGLFDQL--GLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLSKF 161 (291)
T ss_dssp CCSSHHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSSCSSCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHh--CCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccccccchhhHHHHHH
Confidence 11245666666555544431 23789999999999999999999999999999988753110000
Q ss_pred -CCCCCCCChhhhhcc-CCC---------------CCHHHHHHHHh-----cC-----cc--cccCCCCCCeEEEeccCC
Q 004368 637 -LDPTIPLTTAEWEEW-GDP---------------WKEEFYFYMKS-----YS-----PV--DNVKAQNYPHILVTAGLN 687 (758)
Q Consensus 637 -~~~~~~~~~~~~~e~-g~p---------------~~~~~~~~l~~-----~s-----p~--~~i~~~~~P~~Li~~G~~ 687 (758)
...........+..+ .++ .+++.+..+.. .+ +. ..+.++++| +|+++|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lvi~G~~ 240 (291)
T 2wue_A 162 SVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQP-VLLIWGRE 240 (291)
T ss_dssp HHSCCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGGCCSC-EEEEEETT
T ss_pred hccCCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhhCCCC-eEEEecCC
Confidence 000000000000000 011 01111111110 00 11 455667898 99999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC
Q 004368 688 DPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 688 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 726 (758)
|..+|+..+.++++.+. ..++++++ ++||...
T Consensus 241 D~~~~~~~~~~~~~~~p----~~~~~~i~---~~gH~~~ 272 (291)
T 2wue_A 241 DRVNPLDGALVALKTIP----RAQLHVFG---QCGHWVQ 272 (291)
T ss_dssp CSSSCGGGGHHHHHHST----TEEEEEES---SCCSCHH
T ss_pred CCCCCHHHHHHHHHHCC----CCeEEEeC---CCCCChh
Confidence 99999998888776653 24566665 8999753
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.4e-13 Score=140.36 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=75.2
Q ss_pred CCCEEEEecCCCccCCCCCC-ChHHHHHHHcCcEEEEEe----cCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHc
Q 004368 515 SDPLLLYGYGSYEICNDPAF-NSSRLSLLDRGFIFAIAQ----IRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 589 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~-~~~~~~l~~~G~~v~~~~----~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 589 (758)
..|+||++||..+....+.+ ......| ++||.|+.+| +||+|.+... ...+|+.+.+++|.++
T Consensus 37 ~~~~vvllHG~~~~~~~~~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G~G~S~~~-----------~~~~d~~~~~~~l~~~ 104 (335)
T 2q0x_A 37 ARRCVLWVGGQTESLLSFDYFTNLAEEL-QGDWAFVQVEVPSGKIGSGPQDHA-----------HDAEDVDDLIGILLRD 104 (335)
T ss_dssp SSSEEEEECCTTCCTTCSTTHHHHHHHH-TTTCEEEEECCGGGBTTSCSCCHH-----------HHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCccccchhHHHHHHHHH-HCCcEEEEEeccCCCCCCCCcccc-----------CcHHHHHHHHHHHHHH
Confidence 45889999995433222222 2333444 7899999995 5888865421 2357888888888774
Q ss_pred CCCCCCcEEEEEeChhHHHHHHHHh--hCCCceeEEEEcCCccc
Q 004368 590 CYCTKEKLCIEGRSAGGLLIGAVLN--MRPDLFKAAVAAVPFVD 631 (758)
Q Consensus 590 ~~~d~~~i~i~G~S~GG~l~~~~~~--~~p~~f~a~v~~~~~~d 631 (758)
.+.+++.++|+|+||.+++.++. .+|++++++|+.+|+.+
T Consensus 105 --l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~ 146 (335)
T 2q0x_A 105 --HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCD 146 (335)
T ss_dssp --SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCC
T ss_pred --cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCccc
Confidence 34589999999999999999888 57999999999887644
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-12 Score=153.79 Aligned_cols=213 Identities=12% Similarity=0.070 Sum_probs=139.2
Q ss_pred eeEEECCCCCEEEEEEeCCC-------------------------------CeEEEEEEEECCC---C---ceeeccc--
Q 004368 194 GCFQVSPDNKLVAYAEDTKG-------------------------------DEIYTVYVIDIET---G---TPVGKPL-- 234 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G-------------------------------~e~~~l~v~dl~~---g---~~~~~~~-- 234 (758)
..+.|||||++|||.....+ +...+|+++|+++ | +.+.+..
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 35799999999999863322 2235899999999 8 4444322
Q ss_pred ----c-CcceeEEEecCCe-EEEEEeCCCCCCceEEEEEcCCCCC-----CcEEEeeecCCcee-----eEEEEcCCCcE
Q 004368 235 ----V-GVTASVEWAGNEA-LVYITMDEILRPDKAWLHKLEADQS-----NDICLYHEKDDIYS-----LGLQASESKKF 298 (758)
Q Consensus 235 ----~-~~~~~~~wspDg~-l~y~~~~~~~~~~~v~~~~l~~~~~-----~~~~v~~~~~~~~~-----~~~~~S~Dg~~ 298 (758)
. .....++|||||+ +++.... .....+|++.++.++.. ....++++....+. .++.|||||++
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r-~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRR-IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEES-STTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCC-CCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 1 1256689999994 5555443 23344688889887641 01223333333222 25789999999
Q ss_pred EE-EEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcC--CCCCCcEEEEEeCCCCCcceeeecC-
Q 004368 299 LF-IASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRS--DELFNSELLACPVDNTSETTVLIPH- 374 (758)
Q Consensus 299 l~-~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~--~~~~~~~L~~~~~~~~~~~~~l~~~- 374 (758)
|+ +.+...+..+||++|++++. .+.|+.....+...+++||+.|||.++. +.....+||++++++......+...
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~-~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~ 411 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCEL 411 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSS-CEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTT
T ss_pred EEEEEEcCCCceEEEEEECCCCc-eEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeecccc
Confidence 88 66667777999999999887 7888876544444456779999999987 4345689999998762211123322
Q ss_pred ---CCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 375 ---RESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 375 ---~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
.....-..++.+++++++.+...+.+.+.+++.+
T Consensus 412 ~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 412 NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 1122223445556677777776666778888765
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=143.58 Aligned_cols=208 Identities=15% Similarity=0.133 Sum_probs=125.7
Q ss_pred CCCEEEEecCCCccCCCCCCC-hHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFN-SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
+.|+||++||..+.... |. .....|+++||.|+.+|+||.|.... ....+++++.+.+..+++.- +
T Consensus 42 ~~~~vv~lHG~~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G~G~s~~---------~~~~~~~~~~~~~~~~l~~l--~ 108 (293)
T 3hss_A 42 TGDPVVFIAGRGGAGRT--WHPHQVPAFLAAGYRCITFDNRGIGATEN---------AEGFTTQTMVADTAALIETL--D 108 (293)
T ss_dssp SSEEEEEECCTTCCGGG--GTTTTHHHHHHTTEEEEEECCTTSGGGTT---------CCSCCHHHHHHHHHHHHHHH--T
T ss_pred CCCEEEEECCCCCchhh--cchhhhhhHhhcCCeEEEEccCCCCCCCC---------cccCCHHHHHHHHHHHHHhc--C
Confidence 56889999997655433 44 45678889999999999999864321 11234555555555444431 3
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc----------C--CCCCCCChhh----hhcc------
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM----------L--DPTIPLTTAE----WEEW------ 651 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~----------~--~~~~~~~~~~----~~e~------ 651 (758)
.+++.++|+|+||.++..++.++|++++++|+.+|........ . ....+..... ...+
T Consensus 109 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (293)
T 3hss_A 109 IAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTLN 188 (293)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHSCHHHHT
T ss_pred CCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHhhhccccccc
Confidence 4689999999999999999999999999999998865321100 0 0000000000 0000
Q ss_pred --------------CCC-CCHHHHHHH---HhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceE
Q 004368 652 --------------GDP-WKEEFYFYM---KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 713 (758)
Q Consensus 652 --------------g~p-~~~~~~~~l---~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 713 (758)
... ..+.....+ ...+....+.++++| +|+++|++|..+|+..+.++++.+.. .+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~g~~D~~~~~~~~~~~~~~~~~----~~~~ 263 (293)
T 3hss_A 189 DDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAP-VLVIGFADDVVTPPYLGREVADALPN----GRYL 263 (293)
T ss_dssp CHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSC-EEEEEETTCSSSCHHHHHHHHHHSTT----EEEE
T ss_pred ccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCC-EEEEEeCCCCCCCHHHHHHHHHHCCC----ceEE
Confidence 000 011111111 112223445667888 99999999999999888888777632 3556
Q ss_pred EEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 714 LFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 714 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
+++ ++||.......+.+.+ .+.+||.+
T Consensus 264 ~~~---~~gH~~~~~~p~~~~~--~i~~fl~~ 290 (293)
T 3hss_A 264 QIP---DAGHLGFFERPEAVNT--AMLKFFAS 290 (293)
T ss_dssp EET---TCCTTHHHHSHHHHHH--HHHHHHHT
T ss_pred EeC---CCcchHhhhCHHHHHH--HHHHHHHh
Confidence 665 8999753322232222 24566653
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9.7e-14 Score=143.89 Aligned_cols=115 Identities=12% Similarity=0.062 Sum_probs=84.1
Q ss_pred CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcC
Q 004368 495 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN 574 (758)
Q Consensus 495 dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~ 574 (758)
||.++.....- ....|+||++||..+... .|......| .+||.|+.+|+||.|..... ....
T Consensus 18 ~g~~l~~~~~g-------~~~~~~vl~lHG~~~~~~--~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~--------~~~~ 79 (299)
T 3g9x_A 18 LGERMHYVDVG-------PRDGTPVLFLHGNPTSSY--LWRNIIPHV-APSHRCIAPDLIGMGKSDKP--------DLDY 79 (299)
T ss_dssp TTEEEEEEEES-------CSSSCCEEEECCTTCCGG--GGTTTHHHH-TTTSCEEEECCTTSTTSCCC--------CCCC
T ss_pred CCeEEEEEecC-------CCCCCEEEEECCCCccHH--HHHHHHHHH-ccCCEEEeeCCCCCCCCCCC--------CCcc
Confidence 78777654321 122578999999765443 355555555 56999999999999876431 1145
Q ss_pred hHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 575 TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 575 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
+++++.+.+..+++. .+.+++.++|+|+||.++..++.++|++++++|+.++.
T Consensus 80 ~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 132 (299)
T 3g9x_A 80 FFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 132 (299)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEEC
T ss_pred cHHHHHHHHHHHHHH--hCCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCC
Confidence 667777777766665 24578999999999999999999999999999988744
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-13 Score=139.65 Aligned_cols=190 Identities=14% Similarity=0.101 Sum_probs=116.6
Q ss_pred CEEEEecCCC-ccCCCCCCChHH-HHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 517 PLLLYGYGSY-EICNDPAFNSSR-LSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 517 P~vl~~hGg~-~~~~~~~~~~~~-~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
|.||++||.. +......|.... ..|. ++|.|+.+|+||+|.+... .....+++++.+.+..+++. .+.
T Consensus 37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~l~~~l~~--l~~ 106 (289)
T 1u2e_A 37 ETVVLLHGSGPGATGWANFSRNIDPLVE-AGYRVILLDCPGWGKSDSV-------VNSGSRSDLNARILKSVVDQ--LDI 106 (289)
T ss_dssp SEEEEECCCSTTCCHHHHTTTTHHHHHH-TTCEEEEECCTTSTTSCCC-------CCSSCHHHHHHHHHHHHHHH--TTC
T ss_pred ceEEEECCCCcccchhHHHHHhhhHHHh-cCCeEEEEcCCCCCCCCCC-------CccccCHHHHHHHHHHHHHH--hCC
Confidence 3899999953 222222355555 4444 5699999999999976531 11134567777766666554 234
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCC-------------CChhhh----hc-cCCC--
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP-------------LTTAEW----EE-WGDP-- 654 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~-------------~~~~~~----~e-~g~p-- 654 (758)
+++.++|+|+||.+++.++.++|++++++|+.+|......... ..+ ...... .. ..++
T Consensus 107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (289)
T 1u2e_A 107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFT--PMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSD 184 (289)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSS--CSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSCTTS
T ss_pred CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCcccccccc--ccchhhHHHHHHHHhcchHHHHHHHHHHhhcCccc
Confidence 7899999999999999999999999999998877532100000 000 000000 00 0011
Q ss_pred CC--------------HHHHHHHH-h--------cCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCc
Q 004368 655 WK--------------EEFYFYMK-S--------YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN 711 (758)
Q Consensus 655 ~~--------------~~~~~~l~-~--------~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~ 711 (758)
.. ++.+..+. . .+....+.++++| +|+++|++|..||+..+.++++.+. ..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~~~~~----~~~ 259 (289)
T 1u2e_A 185 LTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQ-TLIVWGRNDRFVPMDAGLRLLSGIA----GSE 259 (289)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGGCCSC-EEEEEETTCSSSCTHHHHHHHHHST----TCE
T ss_pred CCHHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhhcCCC-eEEEeeCCCCccCHHHHHHHHhhCC----CcE
Confidence 01 11111110 0 1122355667888 9999999999999999888877654 345
Q ss_pred eEEEEecCCCCCCCC
Q 004368 712 ILLFKCELGAGHFSK 726 (758)
Q Consensus 712 ~~~~~~~~~~gH~~~ 726 (758)
+++++ ++||...
T Consensus 260 ~~~i~---~~gH~~~ 271 (289)
T 1u2e_A 260 LHIFR---DCGHWAQ 271 (289)
T ss_dssp EEEES---SCCSCHH
T ss_pred EEEeC---CCCCchh
Confidence 66665 8999753
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.8e-12 Score=146.48 Aligned_cols=264 Identities=12% Similarity=0.086 Sum_probs=160.8
Q ss_pred eEEeeccccc----CCCCe-----EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc-cCcceeEEEec
Q 004368 176 HLILDENVKA----EGRGF-----YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAG 245 (758)
Q Consensus 176 ~vllD~n~~~----~~~~~-----~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~wsp 245 (758)
++|++.+.+. ...+. ..+..++|||| ++|+|+.+ .+|+++|+++++...+.. ......++|||
T Consensus 58 ~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~------~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp 130 (706)
T 2z3z_A 58 TTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQ------GGLVGFDMLARKVTYLFDTNEETASLDFSP 130 (706)
T ss_dssp CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEET------TEEEEEETTTTEEEEEECCTTCCTTCEECT
T ss_pred EEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEEC------CEEEEEECCCCceEEccCCcccccCCcCCC
Confidence 7788887652 11111 24678899999 89999865 379999999998766432 23355689999
Q ss_pred CC-eEEEEEeCCCCCCceEEEEEcCC-----CCCCcEEEeeecCCce-------------eeEEEEcCCCcEEEEEecC-
Q 004368 246 NE-ALVYITMDEILRPDKAWLHKLEA-----DQSNDICLYHEKDDIY-------------SLGLQASESKKFLFIASES- 305 (758)
Q Consensus 246 Dg-~l~y~~~~~~~~~~~v~~~~l~~-----~~~~~~~v~~~~~~~~-------------~~~~~~S~Dg~~l~~~s~~- 305 (758)
|| .|+|+. + ..|+++++.+ +. ...+........ ...+.|||||++|++.+.+
T Consensus 131 dG~~la~~~-~-----~~i~v~~~~~~~~~~g~--~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~ 202 (706)
T 2z3z_A 131 VGDRVAYVR-N-----HNLYIARGGKLGEGMSR--AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQ 202 (706)
T ss_dssp TSSEEEEEE-T-----TEEEEEECBCTTSCCCC--CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEEC
T ss_pred CCCEEEEEE-C-----CeEEEEecCcccccCCC--cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECC
Confidence 99 788863 2 3699999987 53 233332222211 2367899999999987622
Q ss_pred -----------------------------CcceEEEEEeCCCCCceEEeecc---ccce-eeEEeecCCEEEEEEcCCCC
Q 004368 306 -----------------------------KITRFVFYLDVSKPEELRVLTPR---VVGV-DTAASHRGNHFFITRRSDEL 352 (758)
Q Consensus 306 -----------------------------~~~~~l~~~d~~~~~~~~~l~~~---~~~~-~~~~s~dg~~l~~~s~~~~~ 352 (758)
.....|+++|+++++ .+.+... ...+ ...|+|||++|++.+.....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 281 (706)
T 2z3z_A 203 SMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK-TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQ 281 (706)
T ss_dssp TTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE-EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTS
T ss_pred CCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc-eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCC
Confidence 134689999998876 5454422 1112 24599999999987654324
Q ss_pred CCcEEEEEeCCCCCcceeeecCCCCc---eeeeEEEeC---CEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeecc
Q 004368 353 FNSELLACPVDNTSETTVLIPHRESV---KLQDIQLFI---DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFI 426 (758)
Q Consensus 353 ~~~~L~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~---~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p 426 (758)
....|+.+|+++......+....... .+..+.+.. +.+++....++..+++.++.+ ++.+..++
T Consensus 282 ~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~--~~~~~~l~-------- 351 (706)
T 2z3z_A 282 NECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT--GRLIRQVT-------- 351 (706)
T ss_dssp CEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT--SCEEEECC--------
T ss_pred CeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC--CCEEEecC--------
Confidence 55789999987631333333221111 112334432 235555666777677766644 44332222
Q ss_pred CcccccCC-CCcccCCcEEEEEEecCCCC--CEEEEEECCCCc
Q 004368 427 DPVYSIDP-SESVFSSRILRFHYSSLRTP--PSVYDYDMDMGI 466 (758)
Q Consensus 427 ~~~~~i~~-~~~~~d~~~l~~~~sS~~~P--~~i~~~d~~~~~ 466 (758)
.....+.. +.++++++.+++..+. ..| ..+|.+|..+++
T Consensus 352 ~~~~~v~~~~~~spdg~~l~~~~~~-~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 352 KGEWEVTNFAGFDPKGTRLYFESTE-ASPLERHFYCIDIKGGK 393 (706)
T ss_dssp CSSSCEEEEEEECTTSSEEEEEESS-SCTTCBEEEEEETTCCC
T ss_pred CCCeEEEeeeEEcCCCCEEEEEecC-CCCceEEEEEEEcCCCC
Confidence 11112222 3567788888766543 333 489999988776
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=144.21 Aligned_cols=125 Identities=14% Similarity=0.036 Sum_probs=79.4
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHH-cCcEEEEEecCCCCCCchhHHhcccccCC
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKK 572 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~~~~~~ 572 (758)
.+|.++.....-+.+. +.+.+.||++||+++.... |......|++ .||.|+.+|.||+|.+...-. ....
T Consensus 35 ~~g~~l~y~~~G~~~~---~~~g~plvllHG~~~~~~~--w~~~~~~l~~~~~~~Via~D~rG~G~S~~~~~----~~~~ 105 (330)
T 3nwo_A 35 FGDHETWVQVTTPENA---QPHALPLIVLHGGPGMAHN--YVANIAALADETGRTVIHYDQVGCGNSTHLPD----APAD 105 (330)
T ss_dssp ETTEEEEEEEECCSSC---CTTCCCEEEECCTTTCCSG--GGGGGGGHHHHHTCCEEEECCTTSTTSCCCTT----SCGG
T ss_pred ecCcEEEEEEecCccC---CCCCCcEEEECCCCCCchh--HHHHHHHhccccCcEEEEECCCCCCCCCCCCC----Cccc
Confidence 3677776654333211 1112257788997765433 4455566775 699999999999997643100 0001
Q ss_pred cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 573 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 573 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
..+++++.+.+..+++. ...+++.++|+|+||.+++.++.++|++++++|+..+.
T Consensus 106 ~~~~~~~a~dl~~ll~~--lg~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~ 160 (330)
T 3nwo_A 106 FWTPQLFVDEFHAVCTA--LGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSP 160 (330)
T ss_dssp GCCHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCC
T ss_pred cccHHHHHHHHHHHHHH--cCCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCC
Confidence 12334444433333332 12368999999999999999999999999999887664
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.2e-13 Score=128.86 Aligned_cols=169 Identities=14% Similarity=0.113 Sum_probs=113.6
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
++.|.||++||..+.... .|......++..+ +.++.+|.+. .+++++.+.+..+++. .+
T Consensus 15 g~~~~vv~~HG~~~~~~~-~~~~~~~~~~~~~---~~v~~~~~~~---------------~~~~~~~~~~~~~~~~--~~ 73 (191)
T 3bdv_A 15 SQQLTMVLVPGLRDSDDE-HWQSHWERRFPHW---QRIRQREWYQ---------------ADLDRWVLAIRRELSV--CT 73 (191)
T ss_dssp HTTCEEEEECCTTCCCTT-SHHHHHHHHCTTS---EECCCSCCSS---------------CCHHHHHHHHHHHHHT--CS
T ss_pred CCCceEEEECCCCCCchh-hHHHHHHHhcCCe---EEEeccCCCC---------------cCHHHHHHHHHHHHHh--cC
Confidence 356899999997654322 2333333333333 3456676432 3356666666666654 23
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccC
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVK 673 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~ 673 (758)
+++.++|+|+||.+++.++.++|++++++|+.+|..+....+ +. ...+.
T Consensus 74 -~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~-----------------~~-------------~~~~~ 122 (191)
T 3bdv_A 74 -QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFEI-----------------DD-------------RIQAS 122 (191)
T ss_dssp -SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGGTC-----------------TT-------------TSCSS
T ss_pred -CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccccC-----------------cc-------------ccccc
Confidence 899999999999999999999999999999999976543210 00 02345
Q ss_pred CCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCC----ChHHHHHHHHHHHHHHHHh
Q 004368 674 AQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS----GRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 674 ~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~~fl~~~ 746 (758)
++++| +|+++|++|+.||+.+++++++.+ ..+++.++ ++||.... ...+.+ ..+.+||.+.
T Consensus 123 ~~~~P-~lii~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~---~~gH~~~~~~~~~~~~~~---~~i~~fl~~~ 187 (191)
T 3bdv_A 123 PLSVP-TLTFASHNDPLMSFTRAQYWAQAW-----DSELVDVG---EAGHINAEAGFGPWEYGL---KRLAEFSEIL 187 (191)
T ss_dssp CCSSC-EEEEECSSBTTBCHHHHHHHHHHH-----TCEEEECC---SCTTSSGGGTCSSCHHHH---HHHHHHHHTT
T ss_pred cCCCC-EEEEecCCCCcCCHHHHHHHHHhc-----CCcEEEeC---CCCcccccccchhHHHHH---HHHHHHHHHh
Confidence 55777 999999999999999999998876 24556665 89998643 223333 2346777654
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-13 Score=137.89 Aligned_cols=222 Identities=16% Similarity=0.159 Sum_probs=130.2
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 573 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~ 573 (758)
.+|.++.....-++ +.+.|+||++||..+.. ..|...+..|. .+|.|+.+|+||+|.+... ...
T Consensus 9 ~~g~~l~y~~~g~~-----~~~~~~vvllHG~~~~~--~~~~~~~~~L~-~~~~vi~~D~~G~G~S~~~--------~~~ 72 (266)
T 2xua_A 9 VNGTELHYRIDGER-----HGNAPWIVLSNSLGTDL--SMWAPQVAALS-KHFRVLRYDTRGHGHSEAP--------KGP 72 (266)
T ss_dssp CSSSEEEEEEESCS-----SSCCCEEEEECCTTCCG--GGGGGGHHHHH-TTSEEEEECCTTSTTSCCC--------SSC
T ss_pred ECCEEEEEEEcCCc-----cCCCCeEEEecCccCCH--HHHHHHHHHHh-cCeEEEEecCCCCCCCCCC--------CCC
Confidence 47777765532111 11258999999954433 23556566665 4699999999999976431 122
Q ss_pred ChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccch------hhc---cCCCCCC-C
Q 004368 574 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDV------LTT---MLDPTIP-L 643 (758)
Q Consensus 574 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~------~~~---~~~~~~~-~ 643 (758)
.+++++.+.+..+++.- ..+++.++|+|+||.++..++.++|++++++|+..+.... ... ....... .
T Consensus 73 ~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
T 2xua_A 73 YTIEQLTGDVLGLMDTL--KIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTEGMHAL 150 (266)
T ss_dssp CCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHHHHHHhc--CCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhcChHHH
Confidence 44566665555554432 2368999999999999999999999999999988764321 000 0000000 0
Q ss_pred ChhhhhccC-------CC------------CCHHH----HHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHH
Q 004368 644 TTAEWEEWG-------DP------------WKEEF----YFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFV 700 (758)
Q Consensus 644 ~~~~~~e~g-------~p------------~~~~~----~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~ 700 (758)
.......+- ++ ..+.. +..+...+....+.++++| +|+++|++|..+|+..+++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lvi~G~~D~~~~~~~~~~~~ 229 (266)
T 2xua_A 151 ADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAPGIKVP-ALVISGTHDLAATPAQGRELA 229 (266)
T ss_dssp HHHHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGGGCCSC-EEEEEETTCSSSCHHHHHHHH
T ss_pred HHHHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhccCCCC-EEEEEcCCCCcCCHHHHHHHH
Confidence 000000000 00 01111 1122233444556677898 999999999999998888877
Q ss_pred HHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 701 AKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 701 ~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
+.+.. .+++++ + +||.......+.+.+ .+.+||.
T Consensus 230 ~~~~~----~~~~~~---~-~gH~~~~e~p~~~~~--~i~~fl~ 263 (266)
T 2xua_A 230 QAIAG----ARYVEL---D-ASHISNIERADAFTK--TVVDFLT 263 (266)
T ss_dssp HHSTT----CEEEEE---S-CCSSHHHHTHHHHHH--HHHHHHT
T ss_pred HhCCC----CEEEEe---c-CCCCchhcCHHHHHH--HHHHHHH
Confidence 66542 345554 4 899754322332322 2456663
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-13 Score=145.04 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=78.1
Q ss_pred CCEEEEecCCCccCCCC-------CCChHHH---HHHHcCcEEEEEecCC-CCCCchhHH-hc--cc---ccCCcChHhH
Q 004368 516 DPLLLYGYGSYEICNDP-------AFNSSRL---SLLDRGFIFAIAQIRG-GGELGRQWY-EN--GK---FLKKKNTFTD 578 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~-------~~~~~~~---~l~~~G~~v~~~~~RG-~g~~G~~~~-~~--~~---~~~~~~~~~D 578 (758)
.|+||++||..+..... .|...+. .|+++||.|+.+|+|| +|+....-. .. +. ......+++|
T Consensus 59 ~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~~~~~~~~~~g~~~~~~~~~~~~~~ 138 (377)
T 2b61_A 59 NNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQD 138 (377)
T ss_dssp CCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCHHH
T ss_pred CCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCCCCcccCccccccccccCCcccHHH
Confidence 58999999976654430 1443332 3557899999999999 454322100 00 00 0001246788
Q ss_pred HHHHHHHHHHcCCCCCCcEE-EEEeChhHHHHHHHHhhCCCceeEEEEcCCcc
Q 004368 579 FIACAEYLIKNCYCTKEKLC-IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 579 ~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
+.+.+..+++. .+.+++. ++|+|+||.+++.++.++|++++++|+.+|..
T Consensus 139 ~~~~l~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 189 (377)
T 2b61_A 139 IVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSI 189 (377)
T ss_dssp HHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCS
T ss_pred HHHHHHHHHHH--cCCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCc
Confidence 88887777664 3447887 99999999999999999999999999998853
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-11 Score=131.05 Aligned_cols=196 Identities=11% Similarity=0.133 Sum_probs=131.7
Q ss_pred EEEeeEEECCCCCEEEEEEeCC----CCeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCCCCCCceEEE
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTK----GDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~----G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~ 265 (758)
..+..+++ ||++|||+.... +....+|+++|+++++...+ .....+.||||| .|+|.+.+......+||+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 35677888 999999986532 33367899999999987654 334569999999 899987654334457999
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecC------------------------CcceEEEEEeCCCCCc
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES------------------------KITRFVFYLDVSKPEE 321 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~------------------------~~~~~l~~~d~~~~~~ 321 (758)
.++.++ +...+..... ...+.|||||++|++.+.. .....||++|+.+++
T Consensus 90 ~~~~~g--~~~~l~~~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~- 163 (347)
T 2gop_A 90 ADLETL--SSKKILEAKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE- 163 (347)
T ss_dssp EETTTT--EEEEEEEESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE-
T ss_pred EECCCC--ceEEEEcCCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe-
Confidence 998776 3344443322 4468899999999998743 114689999998876
Q ss_pred e-EEeeccccceeeEEeecCCEEEEEEcCCCC----C-CcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEE
Q 004368 322 L-RVLTPRVVGVDTAASHRGNHFFITRRSDEL----F-NSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYER 395 (758)
Q Consensus 322 ~-~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~----~-~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 395 (758)
. +.++. .......|+||| +++.++.+.. . ..+|+.++ + +....+... .....++++++.+++...
T Consensus 164 ~~~~l~~-~~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~---~~~~~~spdg~~l~~~~~ 234 (347)
T 2gop_A 164 VIEEFEK-PRFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--D-GKEEKMFEK---VSFYAVDSDGERILLYGK 234 (347)
T ss_dssp EEEEEEE-ETTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--T-TEEEEEEEE---ESEEEEEECSSCEEEEEC
T ss_pred EEeeecC-CCcccccCCCCe--EEEEEecccccccccccccEEEeC--C-CceEEeccC---cceeeECCCCCEEEEEEc
Confidence 5 66655 222344599999 6666654321 1 56899998 3 233345443 233445788888887765
Q ss_pred eCC-----eeEEEEEE
Q 004368 396 EGG-----LQKITTYR 406 (758)
Q Consensus 396 ~~g-----~~~l~v~~ 406 (758)
... ...|++++
T Consensus 235 ~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD 250 (347)
T ss_dssp CSSSCCCSSCEEEEEC
T ss_pred cccCCccccceEEEEC
Confidence 431 34666665
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-12 Score=150.15 Aligned_cols=254 Identities=11% Similarity=0.034 Sum_probs=154.0
Q ss_pred EeeEEECCCCCEEEEEEeCCCCe----EEEEEEEECCCCceeeccc-cC---cceeEEEecCC-eEEEEEeCCCCCCceE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDE----IYTVYVIDIETGTPVGKPL-VG---VTASVEWAGNE-ALVYITMDEILRPDKA 263 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e----~~~l~v~dl~~g~~~~~~~-~~---~~~~~~wspDg-~l~y~~~~~~~~~~~v 263 (758)
+..++|||||++|||..+..+.. ..+|+++|+++|+...+.. .+ ....++||||| .|+|.+. .+|
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~------~~i 136 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE------NNI 136 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET------TEE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC------CeE
Confidence 56789999999999998754321 2689999999998754422 22 14558999999 8999874 269
Q ss_pred EEEEcCCCCCCcEEEeeecCCce-----------------eeEEEEcCCCcEEEEEecCCc-------------------
Q 004368 264 WLHKLEADQSNDICLYHEKDDIY-----------------SLGLQASESKKFLFIASESKI------------------- 307 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~~~~~-----------------~~~~~~S~Dg~~l~~~s~~~~------------------- 307 (758)
++.++.++. ...+........ ...+.|||||++|++.+.+..
T Consensus 137 ~~~~~~~g~--~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (723)
T 1xfd_A 137 YYCAHVGKQ--AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK 214 (723)
T ss_dssp EEESSSSSC--CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred EEEECCCCc--eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcce
Confidence 999987763 333433211111 136889999999998774321
Q ss_pred ------------ceEEEEEeCCCCCceEEeecc------ccce-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcc
Q 004368 308 ------------TRFVFYLDVSKPEELRVLTPR------VVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSET 368 (758)
Q Consensus 308 ------------~~~l~~~d~~~~~~~~~l~~~------~~~~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~ 368 (758)
...|+++|+.+++..+.+... ...+ ...|||||+.+++..++. .....|+.+|+++. ..
T Consensus 215 ~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~i~~~d~~~g-~~ 292 (723)
T 1xfd_A 215 PYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA-QNVSILTLCDATTG-VC 292 (723)
T ss_dssp EEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT-SCEEEEEEEETTTC-CE
T ss_pred eccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC-CCeEEEEEEeCCCC-cc
Confidence 237999999887522445432 1111 234999999887776664 34578999998763 32
Q ss_pred eeeecC-CCC-c----eeeeEEEeCCEEEEE-EEeCC----eeEEEEEEcCCCCCc---cccccCCceeeccCcccccC-
Q 004368 369 TVLIPH-RES-V----KLQDIQLFIDHLAVY-EREGG----LQKITTYRLPAVGEP---LKSLQGGKSVEFIDPVYSID- 433 (758)
Q Consensus 369 ~~l~~~-~~~-~----~~~~~~~~~~~l~~~-~~~~g----~~~l~v~~l~~~g~~---~~~l~~~~~i~~p~~~~~i~- 433 (758)
..++.. ... . .-..|+++++.+++. ...++ ..+++++++.. ++. ...++.+ ...+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~l~~~--------~~~~~~ 363 (723)
T 1xfd_A 293 TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP-NSSNDNIQSITSG--------DWDVTK 363 (723)
T ss_dssp EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC-CSSSCCCCBSCCS--------SSCEEE
T ss_pred eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccC-CCCccceeEeecC--------CeEEEe
Confidence 233221 111 1 123456667778776 55566 55777776322 332 2222211 11111
Q ss_pred CCCcccCCcEEEEEEecCC-CCCEEEEEECCCC
Q 004368 434 PSESVFSSRILRFHYSSLR-TPPSVYDYDMDMG 465 (758)
Q Consensus 434 ~~~~~~d~~~l~~~~sS~~-~P~~i~~~d~~~~ 465 (758)
.+.+++|++.++|....-. .-..+|.++..++
T Consensus 364 ~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp EEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred eeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 1357888988876654320 2245777776543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=154.55 Aligned_cols=266 Identities=14% Similarity=0.082 Sum_probs=156.6
Q ss_pred CceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCC----CeEEEEEEEECCCCceee-ccccCcceeEEEecCC-
Q 004368 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKG----DEIYTVYVIDIETGTPVG-KPLVGVTASVEWAGNE- 247 (758)
Q Consensus 174 ~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G----~e~~~l~v~dl~~g~~~~-~~~~~~~~~~~wspDg- 247 (758)
..+.+++....++. .+..++|||||++|||..+..+ +...+|+++|+++|+... ..+......++|||||
T Consensus 47 ~~~~~~~~~~~~~~----~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~ 122 (719)
T 1z68_A 47 QSYTILSNRTMKSV----NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGS 122 (719)
T ss_dssp CEEEEECHHHHHTT----TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTT
T ss_pred cEEEEEcccccccc----ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCC
Confidence 45677776554321 2457899999999999987543 235789999999998731 1233345669999999
Q ss_pred eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCc-----------------eeeEEEEcCCCcEEEEEecCC----
Q 004368 248 ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDI-----------------YSLGLQASESKKFLFIASESK---- 306 (758)
Q Consensus 248 ~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~-----------------~~~~~~~S~Dg~~l~~~s~~~---- 306 (758)
.|+|+.. .+|+++++.++.. ..+....... ....+.|||||++|++.+.+.
T Consensus 123 ~la~~~~------~~i~~~~~~~g~~--~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 123 KLAYVYQ------NNIYLKQRPGDPP--FQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP 194 (719)
T ss_dssp CEEEEET------TEEEEESSTTSCC--EECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC
T ss_pred EEEEEEC------CeEEEEeCCCCCc--EEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc
Confidence 8998852 2699999877632 2332111111 013688999999999977542
Q ss_pred ---------------------------cceEEEEEeCCCCCce---EEeec-----cccc--eeeEEeecCCEEEEEEcC
Q 004368 307 ---------------------------ITRFVFYLDVSKPEEL---RVLTP-----RVVG--VDTAASHRGNHFFITRRS 349 (758)
Q Consensus 307 ---------------------------~~~~l~~~d~~~~~~~---~~l~~-----~~~~--~~~~~s~dg~~l~~~s~~ 349 (758)
....|+++|+++++ . ..+.. .... ....|||||+.++...++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~ 273 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA-YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR 273 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH-HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC-ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence 22378999998765 2 23321 1111 123499997644444454
Q ss_pred CCCCCcEEEEEe----CCCCCcceeeec-----CCCCce-----eeeEEEeCCEEEEE-EEeCCeeEEEEEEcCCCCCcc
Q 004368 350 DELFNSELLACP----VDNTSETTVLIP-----HRESVK-----LQDIQLFIDHLAVY-EREGGLQKITTYRLPAVGEPL 414 (758)
Q Consensus 350 ~~~~~~~L~~~~----~~~~~~~~~l~~-----~~~~~~-----~~~~~~~~~~l~~~-~~~~g~~~l~v~~l~~~g~~~ 414 (758)
. ....+|+.+| +++ +....++. +..... ...++++++.+++. ...+|...|++++++ ++..
T Consensus 274 ~-~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~--~~~~ 349 (719)
T 1z68_A 274 V-QNVSVLSICDFREDWQT-WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDT--VENA 349 (719)
T ss_dssp S-TTEEEEEEEEECSSSSS-EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSC--STTC
T ss_pred c-cCeEEEEEEcccCCCCC-CceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECC--CCce
Confidence 4 3457899999 654 22222331 111111 23455566777664 446777778888765 4322
Q ss_pred ccccCCceeeccCcccccCCCCcccCCcEEEEEEec---CCCCCEEEEEECCCC
Q 004368 415 KSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSS---LRTPPSVYDYDMDMG 465 (758)
Q Consensus 415 ~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS---~~~P~~i~~~d~~~~ 465 (758)
..++ ...+.+...... +++.++|+.+. ...-..+|.+++.++
T Consensus 350 ~~lt--------~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 350 IQIT--------SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EECS--------CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred Eecc--------cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 2222 111122222233 77777766643 123357888887655
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-12 Score=134.61 Aligned_cols=124 Identities=19% Similarity=0.142 Sum_probs=83.2
Q ss_pred EEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcc
Q 004368 488 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG 567 (758)
Q Consensus 488 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~ 567 (758)
..+++..||.++..... +. ...|.||++||+++..... .....+...||.|+.+|+||+|.+...
T Consensus 16 ~~~~~~~~g~~l~~~~~---g~----~~g~~vvllHG~~~~~~~~---~~~~~~~~~~~~vi~~D~~G~G~S~~~----- 80 (317)
T 1wm1_A 16 SGWLDTGDGHRIYWELS---GN----PNGKPAVFIHGGPGGGISP---HHRQLFDPERYKVLLFDQRGCGRSRPH----- 80 (317)
T ss_dssp EEEEECSSSCEEEEEEE---EC----TTSEEEEEECCTTTCCCCG---GGGGGSCTTTEEEEEECCTTSTTCBST-----
T ss_pred eeEEEcCCCcEEEEEEc---CC----CCCCcEEEECCCCCcccch---hhhhhccccCCeEEEECCCCCCCCCCC-----
Confidence 34456668877754321 11 1235689999976643221 112233357999999999999976421
Q ss_pred cccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 568 KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 568 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
......++.++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+..+.
T Consensus 81 -~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 139 (317)
T 1wm1_A 81 -ASLDNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIF 139 (317)
T ss_dssp -TCCTTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -cccccccHHHHHHHHHHHHHH--cCCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccC
Confidence 011223566776666666654 23468999999999999999999999999999987754
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-11 Score=144.76 Aligned_cols=255 Identities=12% Similarity=0.021 Sum_probs=162.1
Q ss_pred CCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec----cc--cC--cceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 199 SPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK----PL--VG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 199 SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~----~~--~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
+|||++++|.....|.....||+++..+++...+ .+ .+ ...+++||||| .|+|...+.+....+|++.++.
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 4999999999998887667899999887765422 11 11 25678999999 8999987666556689999998
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCc-------------ceEEEEEeCCCCC-ceEEeeccc--cc--
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI-------------TRFVFYLDVSKPE-ELRVLTPRV--VG-- 331 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~-------------~~~l~~~d~~~~~-~~~~l~~~~--~~-- 331 (758)
++.... ....... ..+++|||||+.|++.+.... ..+||++++.++. ..+.+.... ..
T Consensus 160 tg~~~~-~~~~~~~---~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~ 235 (710)
T 2xdw_A 160 GAKELP-DVLERVK---FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM 235 (710)
T ss_dssp TTEEEE-EEEEEEC---SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred CCCCCc-ccccCcc---cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence 873211 1222211 235789999999999886544 4579999998765 223443322 11
Q ss_pred eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC------CC-cceeeecCCCCceeeeEEEeCCEEEEEEEeCC-eeEEE
Q 004368 332 VDTAASHRGNHFFITRRSDELFNSELLACPVDN------TS-ETTVLIPHRESVKLQDIQLFIDHLAVYEREGG-LQKIT 403 (758)
Q Consensus 332 ~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~------~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~l~ 403 (758)
....|||||++|++.++.....+..|+.+|+++ +. ....+...... ....++.+++.+++....++ ..+|+
T Consensus 236 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~ 314 (710)
T 2xdw_A 236 GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG-EYDYVTNEGTVFTFKTNRHSPNYRLI 314 (710)
T ss_dssp EEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEE
T ss_pred EEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCc-EEEEEeccCCEEEEEECCCCCCCEEE
Confidence 234599999999998876522257899999865 22 23335544333 33457888999988876554 45688
Q ss_pred EEEcCCCCCccccccCCceeeccCcc-cccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 404 TYRLPAVGEPLKSLQGGKSVEFIDPV-YSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 404 v~~l~~~g~~~~~l~~~~~i~~p~~~-~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
+++++. ++ ... -+.+. +... ..+.++.+. +++.+++++..- .-..++.+|+.+++
T Consensus 315 ~~d~~~-~~-~~~---~~~l~-~~~~~~~~~~~~~~-~~~~lv~~~~~~-g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 315 NIDFTD-PE-ESK---WKVLV-PEHEKDVLEWVACV-RSNFLVLCYLHD-VKNTLQLHDLATGA 370 (710)
T ss_dssp EEETTS-CC-GGG---CEEEE-CCCSSCEEEEEEEE-TTTEEEEEEEET-TEEEEEEEETTTCC
T ss_pred EEeCCC-CC-ccc---ceecc-CCCCCCeEEEEEEE-cCCEEEEEEEEC-CEEEEEEEECCCCC
Confidence 888763 21 000 01221 1111 122223333 356676666543 33578999986665
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=139.44 Aligned_cols=212 Identities=13% Similarity=0.108 Sum_probs=123.3
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|+||++||..+... .|......|. ++|.|+.+|+||+|.+...-.. .....+++++.+.+..+++. .+.+
T Consensus 20 ~~~vvllHG~~~~~~--~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~~~~----~~~~~~~~~~a~dl~~~l~~--l~~~ 90 (271)
T 1wom_A 20 KASIMFAPGFGCDQS--VWNAVAPAFE-EDHRVILFDYVGSGHSDLRAYD----LNRYQTLDGYAQDVLDVCEA--LDLK 90 (271)
T ss_dssp SSEEEEECCTTCCGG--GGTTTGGGGT-TTSEEEECCCSCCSSSCCTTCC----TTGGGSHHHHHHHHHHHHHH--TTCS
T ss_pred CCcEEEEcCCCCchh--hHHHHHHHHH-hcCeEEEECCCCCCCCCCCccc----ccccccHHHHHHHHHHHHHH--cCCC
Confidence 378999999544332 3555455554 4799999999999976431100 01112455555544444443 2347
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc--CCCCCCC------------Chhhhh------ccCCCC
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM--LDPTIPL------------TTAEWE------EWGDPW 655 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~--~~~~~~~------------~~~~~~------e~g~p~ 655 (758)
++.++|+|+||.++..++.++|++++++|+..+........ ....... ....|. ..+.+.
T Consensus 91 ~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (271)
T 1wom_A 91 ETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPD 170 (271)
T ss_dssp CEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCTT
T ss_pred CeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999887642110000 0000000 000000 012222
Q ss_pred CHHHHHH----HH---------------hcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEE
Q 004368 656 KEEFYFY----MK---------------SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 716 (758)
Q Consensus 656 ~~~~~~~----l~---------------~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 716 (758)
.++..+. +. ..+....+.++++| +|+++|++|..+|+..+.++.+.+. ..++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lvi~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~ 245 (271)
T 1wom_A 171 RPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVP-SLILQCADDIIAPATVGKYMHQHLP----YSSLKQME 245 (271)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSC-EEEEEEETCSSSCHHHHHHHHHHSS----SEEEEEEE
T ss_pred chHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCC-EEEEEcCCCCcCCHHHHHHHHHHCC----CCEEEEeC
Confidence 2211111 11 11222345667898 9999999999999887777766543 24677776
Q ss_pred ecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 717 CELGAGHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 717 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
++||.......+.+.+. +.+||.++
T Consensus 246 ---~~gH~~~~e~p~~~~~~--i~~fl~~~ 270 (271)
T 1wom_A 246 ---ARGHCPHMSHPDETIQL--IGDYLKAH 270 (271)
T ss_dssp ---EESSCHHHHCHHHHHHH--HHHHHHHH
T ss_pred ---CCCcCccccCHHHHHHH--HHHHHHhc
Confidence 89997543333333332 56788765
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.44 E-value=9.3e-13 Score=136.80 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=85.7
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCC
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 572 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~ 572 (758)
..||.++..... ++.|+||++||..+... .|...+..|.+ ||.|+.+|.||+|.....-. .....
T Consensus 19 ~~~g~~l~~~~~---------g~~~~vv~lHG~~~~~~--~~~~~~~~l~~-~~~v~~~D~~G~G~S~~~~~---~~~~~ 83 (306)
T 3r40_A 19 NTSSGRIFARVG---------GDGPPLLLLHGFPQTHV--MWHRVAPKLAE-RFKVIVADLPGYGWSDMPES---DEQHT 83 (306)
T ss_dssp CCTTCCEEEEEE---------ECSSEEEEECCTTCCGG--GGGGTHHHHHT-TSEEEEECCTTSTTSCCCCC---CTTCG
T ss_pred EeCCEEEEEEEc---------CCCCeEEEECCCCCCHH--HHHHHHHHhcc-CCeEEEeCCCCCCCCCCCCC---CcccC
Confidence 457877765421 24589999999765443 35566666666 99999999999987643211 00001
Q ss_pred cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 573 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 573 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
..+++++.+.+..+++. .+.+++.++|+|+||.++..++.++|++++++|+.+|.
T Consensus 84 ~~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 138 (306)
T 3r40_A 84 PYTKRAMAKQLIEAMEQ--LGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDIL 138 (306)
T ss_dssp GGSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCCHHHHHHHHHHHHHH--hCCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCC
Confidence 34566777666665554 24478999999999999999999999999999999864
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=147.77 Aligned_cols=113 Identities=15% Similarity=0.109 Sum_probs=80.5
Q ss_pred CCCCEEEEecCCCccCCC---CCCC-----------hHHHHHHHcCcEEEEEecCCCCCCchhHHh-cccc-cCC-cChH
Q 004368 514 GSDPLLLYGYGSYEICND---PAFN-----------SSRLSLLDRGFIFAIAQIRGGGELGRQWYE-NGKF-LKK-KNTF 576 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~---~~~~-----------~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~-~~~~-~~~-~~~~ 576 (758)
++.|+||++||..+.... ..|. .....|+++||.|+.+|+||+|.....-.. .+.. ... ....
T Consensus 48 ~~~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 127 (354)
T 2rau_A 48 GGNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWI 127 (354)
T ss_dssp CCEEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTCCGGGGGGGTTCSHHHHH
T ss_pred CCCCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCcccccccccccCCcHHHHH
Confidence 456899999997665431 1222 566788889999999999998865421100 0000 001 2235
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC-CCceeEEEEcCC
Q 004368 577 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVP 628 (758)
Q Consensus 577 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~ 628 (758)
+|+.++++++.++ .+.+++.++|+|+||.+++.++.++ |++++++|+.++
T Consensus 128 ~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~ 178 (354)
T 2rau_A 128 SDIKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDG 178 (354)
T ss_dssp HHHHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESC
T ss_pred HHHHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEecc
Confidence 7888888888765 3457999999999999999999998 999999999854
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-12 Score=147.57 Aligned_cols=238 Identities=9% Similarity=-0.025 Sum_probs=149.6
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC--cceeEEEecCCeEEEEEeC-CCCCCceEEEEEc-
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNEALVYITMD-EILRPDKAWLHKL- 268 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~wspDg~l~y~~~~-~~~~~~~v~~~~l- 268 (758)
+..+.+||||++|||+.+.+| ..+||+ +++|+.++++... ....++|||| +++|++.. ......++|..++
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g--~~~lw~--~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEG--SVNAYL--YDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETT--EEEEEE--EETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred hheeecCCCCCeEEEEEccCC--ceeEEE--EcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 667789999999999998766 355555 5688777654322 3566899999 89998874 3444567888887
Q ss_pred -CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEE
Q 004368 269 -EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITR 347 (758)
Q Consensus 269 -~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s 347 (758)
.+. ...+... .. .. ..+|||||+.+++.+...+...|| |+++++ .+.++.... ....|||||++|++.+
T Consensus 99 ~~g~---~~~l~~~-~~-~~-~~~~s~dg~~~~~~s~~~~~~~l~--d~~~g~-~~~l~~~~~-~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 99 RPGE---EQRLEAV-KP-MR-ILSGVDTGEAVVFTGATEDRVALY--ALDGGG-LRELARLPG-FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp STTC---CEECTTS-CS-BE-EEEEEECSSCEEEEEECSSCEEEE--EEETTE-EEEEEEESS-CEEEEEEETTEEEEEE
T ss_pred CCCc---cccccCC-CC-ce-eeeeCCCCCeEEEEecCCCCceEE--EccCCc-EEEeecCCC-ceEEECCCCCEEEEEE
Confidence 332 2223221 11 12 357999999888877665555444 777776 666665433 4556999999999888
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccC
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID 427 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~ 427 (758)
++. .....|+++|+++. ..+.+..+.....-..|+++++.|+ ....++..+|++++++ ++... .+..
T Consensus 169 ~~~-~~~~~i~~~d~~~g-~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~--~~~~~--------~~~~ 235 (582)
T 3o4h_A 169 FFG-GGRVSLFTSNLSSG-GLRVFDSGEGSFSSASISPGMKVTA-GLETAREARLVTVDPR--DGSVE--------DLEL 235 (582)
T ss_dssp EEE-TTEEEEEEEETTTC-CCEEECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEEECTT--TCCEE--------ECCC
T ss_pred EcC-CCCeEEEEEcCCCC-CceEeecCCCccccceECCCCCEEE-EccCCCeeEEEEEcCC--CCcEE--------EccC
Confidence 765 23367999998763 3444554433333334455566776 5566776788888876 33221 2222
Q ss_pred cccccCCCC--------cccCCcEEEEEEecCCCCCEEEEEEC
Q 004368 428 PVYSIDPSE--------SVFSSRILRFHYSSLRTPPSVYDYDM 462 (758)
Q Consensus 428 ~~~~i~~~~--------~~~d~~~l~~~~sS~~~P~~i~~~d~ 462 (758)
....+..+. +++|+ .++++.+.- ..+..|++
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~---g~~~l~~~ 274 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDG-RLAVVARRE---GRSAVFID 274 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTS-CEEEEEEET---TEEEEEET
T ss_pred CCcChhhhhhccccceeEcCCC-cEEEEEEcC---CcEEEEEE
Confidence 222222234 67888 666665433 34666666
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-13 Score=149.38 Aligned_cols=140 Identities=11% Similarity=0.068 Sum_probs=87.4
Q ss_pred EeeCCCCeEEEEEEEeeccccccC-CCCCEEEEecCCCccCCCCC-CChHHH---HHHHcCcEEEEEecCCC--CCCchh
Q 004368 490 WASASDGTQIPICIVYRKNLVKLD-GSDPLLLYGYGSYEICNDPA-FNSSRL---SLLDRGFIFAIAQIRGG--GELGRQ 562 (758)
Q Consensus 490 ~~~s~dG~~i~~~l~~p~~~~~~~-~~~P~vl~~hGg~~~~~~~~-~~~~~~---~l~~~G~~v~~~~~RG~--g~~G~~ 562 (758)
.+...+|..+.+.-++-......+ ...|+||++||..+...... |...+. .|+.+||.|+.+|+||+ |..+..
T Consensus 82 ~~~~~~g~~~~g~~l~y~~~G~~~~~~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~~~G~S~~~ 161 (444)
T 2vat_A 82 LFTLESGVILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSAGPC 161 (444)
T ss_dssp EEECTTSCEEEEEEEEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSSSTT
T ss_pred CeecCCCCEecceeEEEEEecCCCCCCCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCCCCCCCCCC
Confidence 344556666655333222210111 23589999999766554311 333332 35578999999999994 544321
Q ss_pred HHhc--cc-----ccCCcChHhHHHHHHHHHHHcCCCCCCc-EEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccc
Q 004368 563 WYEN--GK-----FLKKKNTFTDFIACAEYLIKNCYCTKEK-LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 631 (758)
Q Consensus 563 ~~~~--~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 631 (758)
-... +. ......+++|+.+.+..+++. ...++ +.++|+|+||.+++.++.++|++++++|+.++...
T Consensus 162 ~~~~~~~~~~~~~~~f~~~t~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~ 236 (444)
T 2vat_A 162 SPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCR 236 (444)
T ss_dssp SBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSB
T ss_pred CCCcccccccccccccccccHHHHHHHHHHHHHh--cCCccceEEEEECHHHHHHHHHHHhChHhhheEEEEecccc
Confidence 0000 00 000124677777777666554 23467 99999999999999999999999999999887654
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=146.67 Aligned_cols=189 Identities=15% Similarity=0.117 Sum_probs=114.4
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|+||++||..+.... |...... .||.|+.+|+||.|..... .....+++++.+.+..+++. .+.+
T Consensus 81 ~~~vv~~hG~~~~~~~--~~~~~~~---lg~~Vi~~D~~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~~~ 146 (330)
T 3p2m_A 81 APRVIFLHGGGQNAHT--WDTVIVG---LGEPALAVDLPGHGHSAWR-------EDGNYSPQLNSETLAPVLRE--LAPG 146 (330)
T ss_dssp CCSEEEECCTTCCGGG--GHHHHHH---SCCCEEEECCTTSTTSCCC-------SSCBCCHHHHHHHHHHHHHH--SSTT
T ss_pred CCeEEEECCCCCccch--HHHHHHH---cCCeEEEEcCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHH--hCCC
Confidence 5789999997554322 3333333 3999999999999865421 12334566666666655554 2457
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc---CCC------------CCCCChhhhhcc--CCC-CCH
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM---LDP------------TIPLTTAEWEEW--GDP-WKE 657 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~---~~~------------~~~~~~~~~~e~--g~p-~~~ 657 (758)
++.++|+|+||.+++.++.++|++++++|+.+|........ ... ..+........+ ..+ ...
T Consensus 147 ~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (330)
T 3p2m_A 147 AEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHGEREFPSFQAMLDLTIAAAPHRDV 226 (330)
T ss_dssp CCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTCC-----------CCBSCHHHHHHHHHHHCTTSCH
T ss_pred CcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhhhhhhhhhhhcCCccccCHHHHHHHHHhcCCCCCH
Confidence 89999999999999999999999999999998764421110 000 000000000000 111 111
Q ss_pred HHHH-HHHhc-------------C----------cccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCc-e
Q 004368 658 EFYF-YMKSY-------------S----------PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN-I 712 (758)
Q Consensus 658 ~~~~-~l~~~-------------s----------p~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~-~ 712 (758)
+.+. .+... . ....+.++++| +|+++|++|..||+..++++++.+.. .+ +
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vLii~G~~D~~v~~~~~~~l~~~~~~----~~~~ 301 (330)
T 3p2m_A 227 KSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAP-ITLVRGGSSGFVTDQDTAELHRRATH----FRGV 301 (330)
T ss_dssp HHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSC-EEEEEETTCCSSCHHHHHHHHHHCSS----EEEE
T ss_pred HHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCC-EEEEEeCCCCCCCHHHHHHHHHhCCC----CeeE
Confidence 1111 11100 0 01223456788 99999999999999888877766532 34 5
Q ss_pred EEEEecCCCCCCCC
Q 004368 713 LLFKCELGAGHFSK 726 (758)
Q Consensus 713 ~~~~~~~~~gH~~~ 726 (758)
++++ ++||...
T Consensus 302 ~~i~---~~gH~~~ 312 (330)
T 3p2m_A 302 HIVE---KSGHSVQ 312 (330)
T ss_dssp EEET---TCCSCHH
T ss_pred EEeC---CCCCCcc
Confidence 5665 8999753
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.6e-12 Score=134.97 Aligned_cols=253 Identities=7% Similarity=-0.027 Sum_probs=147.1
Q ss_pred EEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc-ccCcc-ee-------------------EEEecCC-eEEEEE
Q 004368 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVT-AS-------------------VEWAGNE-ALVYIT 253 (758)
Q Consensus 196 ~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~-~~-------------------~~wspDg-~l~y~~ 253 (758)
+.|||||++|||+.... +|+++|+++++..... ..... .. +.|+||| .++|..
T Consensus 86 ~~~spdg~~l~~~~~~~-----~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 160 (396)
T 3c5m_A 86 GFISTDERAFFYVKNEL-----NLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE 160 (396)
T ss_dssp CEECTTSSEEEEEETTT-----EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred ceECCCCCEEEEEEcCC-----cEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeee
Confidence 68999999999998643 6999999999876542 12110 00 2334444 232221
Q ss_pred eCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcC-CCcEEEEEecCCc---ceEEEEEeCCCCCceEEeeccc
Q 004368 254 MDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKI---TRFVFYLDVSKPEELRVLTPRV 329 (758)
Q Consensus 254 ~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~-Dg~~l~~~s~~~~---~~~l~~~d~~~~~~~~~l~~~~ 329 (758)
.........|+.+++.++. ...+... ......+.||| ||+.|++.+.... ..+||++|+++++ .+.+....
T Consensus 161 ~~~~~~~~~l~~~d~~~g~--~~~~~~~--~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~ 235 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGE--LEVIHQD--TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-VRKIKEHA 235 (396)
T ss_dssp HHHTCCCEEEEEEETTTCC--EEEEEEE--SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-CEESSCCC
T ss_pred eccCCCcceEEEEECCCCc--EEeeccC--CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-eeEeeccC
Confidence 1001234578999988763 3344432 22334678999 8998888775322 1689999998776 66665532
Q ss_pred cc--e-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEE-eCCEEEEEEE----------
Q 004368 330 VG--V-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL-FIDHLAVYER---------- 395 (758)
Q Consensus 330 ~~--~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~---------- 395 (758)
.. + ...|+|||++|++.++..+.....|+++|+++. ....+.... ... ..+++ ++..+++...
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g-~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 236 EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL-ENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC-CEEEEEECC-SEE-EEEECSSSSEEEEEECCC--------
T ss_pred CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC-CeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeecccc
Confidence 12 2 235999999999988765333345999998763 333333222 222 44555 6665544221
Q ss_pred ---eCCeeEEEEEEcCCCCCccccccCCceeeccCccc---------ccCCCCcccCCcEEEEEEecCCCCCEEEEEECC
Q 004368 396 ---EGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVY---------SIDPSESVFSSRILRFHYSSLRTPPSVYDYDMD 463 (758)
Q Consensus 396 ---~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~---------~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~ 463 (758)
.++...++++++. ++... .+.-..... ....+.++++++.++|.... ..+..+|.+|+.
T Consensus 313 ~~~~~~~~~i~~~d~~--~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~-~~~~~l~~~~~~ 383 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTK--AKSAQ------KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF-EGVPAIYIADVP 383 (396)
T ss_dssp --CCCCCCEEEEEETT--TTBCC------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-TSSCEEEEEECC
T ss_pred ccccCCCCcEEEEecc--cCceE------EccCCCCccccccccccCCCCCceEccCCCeEEEEecC-CCCceEEEEEEc
Confidence 1244678888876 33222 222111000 12234567788888766543 456789999998
Q ss_pred CCcEEEE
Q 004368 464 MGISVLK 470 (758)
Q Consensus 464 ~~~~~~~ 470 (758)
+++.+++
T Consensus 384 ~~~~~~~ 390 (396)
T 3c5m_A 384 ESYKHLE 390 (396)
T ss_dssp TTCC---
T ss_pred ccccccc
Confidence 8875443
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=134.30 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=76.6
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++||..+.. ..|...+..|.++||.|+.+|+||+|.+...- .....+++++.+.+..+++.- +.+
T Consensus 46 g~~vvllHG~~~~~--~~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~~------~~~~~~~~~~a~dl~~ll~~l--~~~ 115 (297)
T 2xt0_A 46 EHTFLCLHGEPSWS--FLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPT------DDAVYTFGFHRRSLLAFLDAL--QLE 115 (297)
T ss_dssp SCEEEEECCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCEES------CGGGCCHHHHHHHHHHHHHHH--TCC
T ss_pred CCeEEEECCCCCcc--eeHHHHHHHHHhCCcEEEEeCCCCCCCCCCCC------CcccCCHHHHHHHHHHHHHHh--CCC
Confidence 47899999975543 34666777888899999999999999764310 001234555555444444331 237
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
++.++|+|+||.+++.++.++|++++++|+..+.
T Consensus 116 ~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~ 149 (297)
T 2xt0_A 116 RVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTA 149 (297)
T ss_dssp SEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCC
T ss_pred CEEEEEECchHHHHHHHHHhChHHhcEEEEECCC
Confidence 8999999999999999999999999999988764
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=134.25 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=77.5
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHc-CCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN-CYC 592 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~ 592 (758)
+..|.||++||..+.. ..|......|.++||.|+.+|.||+|.+...- ....+++++.+.+..++++ +.
T Consensus 8 ~~g~~vvllHG~~~~~--~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~l~~- 77 (264)
T 2wfl_A 8 KQQKHFVLVHGGCLGA--WIWYKLKPLLESAGHKVTAVDLSAAGINPRRL-------DEIHTFRDYSEPLMEVMASIPP- 77 (264)
T ss_dssp -CCCEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHHHHHHHHHHHSCT-
T ss_pred CCCCeEEEECCCcccc--chHHHHHHHHHhCCCEEEEeecCCCCCCCCCc-------ccccCHHHHHHHHHHHHHHhCC-
Confidence 3568899999965433 34677777888899999999999999764311 1123456666555544443 21
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
.+++.++|||+||.++..++.++|++++++|+.++.
T Consensus 78 -~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~ 113 (264)
T 2wfl_A 78 -DEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAM 113 (264)
T ss_dssp -TCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSC
T ss_pred -CCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeec
Confidence 368999999999999999999999999999987753
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-12 Score=131.71 Aligned_cols=124 Identities=16% Similarity=0.040 Sum_probs=83.1
Q ss_pred EEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcc
Q 004368 488 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG 567 (758)
Q Consensus 488 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~ 567 (758)
..+++..||.++..... + . ...|.||++||+++..... .....|..+||.|+.+|.||+|.+...
T Consensus 13 ~~~~~~~~g~~l~y~~~---G--~--~~g~pvvllHG~~~~~~~~---~~~~~~~~~~~~vi~~D~~G~G~S~~~----- 77 (313)
T 1azw_A 13 QGSLKVDDRHTLYFEQC---G--N--PHGKPVVMLHGGPGGGCND---KMRRFHDPAKYRIVLFDQRGSGRSTPH----- 77 (313)
T ss_dssp EEEEECSSSCEEEEEEE---E--C--TTSEEEEEECSTTTTCCCG---GGGGGSCTTTEEEEEECCTTSTTSBST-----
T ss_pred cceEEcCCCCEEEEEec---C--C--CCCCeEEEECCCCCccccH---HHHHhcCcCcceEEEECCCCCcCCCCC-----
Confidence 34455668877754321 1 1 1235689999976543221 112233357999999999999976421
Q ss_pred cccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 568 KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 568 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
......+++++.+.+..+++.- .-+++.++|+|+||.+++.++.++|++++++|+..++
T Consensus 78 -~~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~ 136 (313)
T 1azw_A 78 -ADLVDNTTWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp -TCCTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -cccccccHHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccc
Confidence 0112235666666666665542 3368999999999999999999999999999987764
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-13 Score=138.73 Aligned_cols=120 Identities=10% Similarity=-0.007 Sum_probs=82.8
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 573 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~ 573 (758)
.+|.++..... ++.|+||++||..+... .|......|. ++|.|+.+|+||.|.....- ......
T Consensus 15 ~~g~~l~~~~~---------g~~~~vv~lHG~~~~~~--~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~----~~~~~~ 78 (297)
T 2qvb_A 15 IAGKRMAYIDE---------GKGDAIVFQHGNPTSSY--LWRNIMPHLE-GLGRLVACDLIGMGASDKLS----PSGPDR 78 (297)
T ss_dssp ETTEEEEEEEE---------SSSSEEEEECCTTCCGG--GGTTTGGGGT-TSSEEEEECCTTSTTSCCCS----SCSTTS
T ss_pred ECCEEEEEEec---------CCCCeEEEECCCCchHH--HHHHHHHHHh-hcCeEEEEcCCCCCCCCCCC----CccccC
Confidence 47877654321 23589999999765443 2444444554 46999999999998764320 000111
Q ss_pred ChHhHHHHHHHHHHHcCCCCC-CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccc
Q 004368 574 NTFTDFIACAEYLIKNCYCTK-EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 631 (758)
Q Consensus 574 ~~~~D~~~~~~~l~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 631 (758)
.+++++.+.+..+++. .+. +++.++|+|+||.+++.++.++|++++++|+.+|...
T Consensus 79 ~~~~~~~~~~~~~l~~--~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 135 (297)
T 2qvb_A 79 YSYGEQRDFLFALWDA--LDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVT 135 (297)
T ss_dssp SCHHHHHHHHHHHHHH--TTCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCS
T ss_pred cCHHHHHHHHHHHHHH--cCCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccC
Confidence 4556666665555544 234 7899999999999999999999999999999888653
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.4e-13 Score=137.63 Aligned_cols=228 Identities=8% Similarity=-0.009 Sum_probs=133.7
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCC
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 572 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~ 572 (758)
..||.++..... ++.|+||++||..+... .|......|.+ +|.|+.+|+||.|.....- .....
T Consensus 15 ~~~g~~l~~~~~---------g~~~~vv~lHG~~~~~~--~~~~~~~~L~~-~~~vi~~D~~G~G~S~~~~----~~~~~ 78 (302)
T 1mj5_A 15 EIKGRRMAYIDE---------GTGDPILFQHGNPTSSY--LWRNIMPHCAG-LGRLIACDLIGMGDSDKLD----PSGPE 78 (302)
T ss_dssp EETTEEEEEEEE---------SCSSEEEEECCTTCCGG--GGTTTGGGGTT-SSEEEEECCTTSTTSCCCS----SCSTT
T ss_pred EECCEEEEEEEc---------CCCCEEEEECCCCCchh--hhHHHHHHhcc-CCeEEEEcCCCCCCCCCCC----CCCcc
Confidence 457877754321 23589999999765443 34444555554 4899999999998764320 00111
Q ss_pred cChHhHHHHHHHHHHHcCCCCC-CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhc-------------cCC
Q 004368 573 KNTFTDFIACAEYLIKNCYCTK-EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT-------------MLD 638 (758)
Q Consensus 573 ~~~~~D~~~~~~~l~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~-------------~~~ 638 (758)
..+++|+.+.+..+++. .+. +++.++|+|+||.+++.++.++|++++++|+.+|....... +..
T Consensus 79 ~~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (302)
T 1mj5_A 79 RYAYAEHRDYLDALWEA--LDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRS 156 (302)
T ss_dssp SSCHHHHHHHHHHHHHH--TTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHH--hCCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCchhhhhhhHHHHHHHHHHhc
Confidence 24567777766665554 234 78999999999999999999999999999998876531100 000
Q ss_pred CC-------CCCChhhh-hc-cCCCCCHHHH------------------HHHHhc--------------CcccccCCCCC
Q 004368 639 PT-------IPLTTAEW-EE-WGDPWKEEFY------------------FYMKSY--------------SPVDNVKAQNY 677 (758)
Q Consensus 639 ~~-------~~~~~~~~-~e-~g~p~~~~~~------------------~~l~~~--------------sp~~~i~~~~~ 677 (758)
.. .......+ .. ......++.. ..++.. +....+.++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 236 (302)
T 1mj5_A 157 QAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESPI 236 (302)
T ss_dssp TTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHHHHTTCCS
T ss_pred cchhhhhcChHHHHHHHHHhcCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccchhhHHHHHHHHhhhhccCC
Confidence 00 00000000 00 0011111111 111111 11234456788
Q ss_pred CeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCC
Q 004368 678 PHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 678 P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
| +|+++|++|..||+..++++++.+. . +++++ ++||.......+.+.+. +.+||.+..+..
T Consensus 237 P-~l~i~g~~D~~~~~~~~~~~~~~~~----~-~~~~~----~~gH~~~~e~p~~~~~~--i~~fl~~~~~~~ 297 (302)
T 1mj5_A 237 P-KLFINAEPGALTTGRMRDFCRTWPN----Q-TEITV----AGAHFIQEDSPDEIGAA--IAAFVRRLRPAH 297 (302)
T ss_dssp C-EEEEEEEECSSSSHHHHHHHTTCSS----E-EEEEE----EESSCGGGTCHHHHHHH--HHHHHHHHSCCC
T ss_pred C-eEEEEeCCCCCCChHHHHHHHHhcC----C-ceEEe----cCcCcccccCHHHHHHH--HHHHHHhhcccc
Confidence 8 9999999999999877766654432 2 33333 68998654445444443 578998776543
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-12 Score=132.68 Aligned_cols=212 Identities=15% Similarity=0.114 Sum_probs=126.5
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++||..+.. ..|......|.++||.|+.+|+||+|.+...- ....+++++.+.+..+++.-. ..+
T Consensus 4 ~~~vvllHG~~~~~--~~w~~~~~~L~~~g~rVia~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~l~-~~~ 73 (273)
T 1xkl_A 4 GKHFVLVHGACHGG--WSWYKLKPLLEAAGHKVTALDLAASGTDLRKI-------EELRTLYDYTLPLMELMESLS-ADE 73 (273)
T ss_dssp CCEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEECCCTTSTTCCCCG-------GGCCSHHHHHHHHHHHHHTSC-SSS
T ss_pred CCeEEEECCCCCCc--chHHHHHHHHHhCCCEEEEecCCCCCCCccCc-------ccccCHHHHHHHHHHHHHHhc-cCC
Confidence 47899999965433 34667777888899999999999999764311 112356676666655555421 136
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccc-h-------hhccCC--CCCCCC-------------------hh
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD-V-------LTTMLD--PTIPLT-------------------TA 646 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d-~-------~~~~~~--~~~~~~-------------------~~ 646 (758)
++.++|+||||.++..++.++|++++++|+.++... . ...+.. ....+. ..
T Consensus 74 ~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (273)
T 1xkl_A 74 KVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGP 153 (273)
T ss_dssp CEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCH
T ss_pred CEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhccCCCCCccccccCH
Confidence 899999999999999999999999999998776421 0 000000 000000 00
Q ss_pred hh-hc-cCCCCCHHHHHHHHh-cCcc----------cccC---CCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCC
Q 004368 647 EW-EE-WGDPWKEEFYFYMKS-YSPV----------DNVK---AQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 710 (758)
Q Consensus 647 ~~-~e-~g~p~~~~~~~~l~~-~sp~----------~~i~---~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~ 710 (758)
.+ .. +.....++....... ..|. ..+. ..++| +|+++|++|..+|+..++++++.+. ..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~G~~D~~~p~~~~~~~~~~~p----~~ 228 (273)
T 1xkl_A 154 KFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVK-RVYIVCTEDKGIPEEFQRWQIDNIG----VT 228 (273)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSC-EEEEEETTCTTTTHHHHHHHHHHHC----CS
T ss_pred HHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhhhCCCC-eEEEEeCCccCCCHHHHHHHHHhCC----CC
Confidence 00 00 000001111111100 0110 0111 12577 8999999999999988888877763 24
Q ss_pred ceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 004368 711 NILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 711 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 747 (758)
++++++ ++||.......+.+.+. +.+|+.+..
T Consensus 229 ~~~~i~---~aGH~~~~e~P~~~~~~--i~~fl~~~~ 260 (273)
T 1xkl_A 229 EAIEIK---GADHMAMLCEPQKLCAS--LLEIAHKYN 260 (273)
T ss_dssp EEEEET---TCCSCHHHHSHHHHHHH--HHHHHHHCC
T ss_pred eEEEeC---CCCCCchhcCHHHHHHH--HHHHHHHhc
Confidence 566776 99997544444444443 567887654
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=138.11 Aligned_cols=120 Identities=22% Similarity=0.281 Sum_probs=80.6
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCC
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 572 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~ 572 (758)
..+|.++.... . ++.|.||++||..+.. ..|...+..|+++||.|+.+|+||+|.+...-. ....
T Consensus 17 ~~~g~~l~y~~-----~----G~g~~vvllHG~~~~~--~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~~----~~~~ 81 (328)
T 2cjp_A 17 AVNGLNMHLAE-----L----GEGPTILFIHGFPELW--YSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPL----NDPS 81 (328)
T ss_dssp EETTEEEEEEE-----E----CSSSEEEEECCTTCCG--GGGHHHHHHHHTTTCEEEEECCTTSTTCBCCCT----TCGG
T ss_pred cCCCcEEEEEE-----c----CCCCEEEEECCCCCch--HHHHHHHHHHHHCCcEEEEECCCCCCCCCCcCc----CCcc
Confidence 34777765432 1 2348899999976543 336666677888899999999999997643100 0011
Q ss_pred cChHhHHHHHHHHHHHc-CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 573 KNTFTDFIACAEYLIKN-CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 573 ~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
..+++++.+.+..+++. +. +.+++.++|+|+||.++..++.++|++++++|+.++
T Consensus 82 ~~~~~~~a~dl~~~l~~l~~-~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~ 137 (328)
T 2cjp_A 82 KFSILHLVGDVVALLEAIAP-NEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSV 137 (328)
T ss_dssp GGSHHHHHHHHHHHHHHHCT-TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred cccHHHHHHHHHHHHHHhcC-CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEcc
Confidence 12344444433333322 21 247899999999999999999999999999998664
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.41 E-value=8.9e-13 Score=136.96 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=84.5
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 573 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~ 573 (758)
.||.++..... ++.|+||++||..+.. ..|......|.++ |.|+.+|.||.|..... ...
T Consensus 17 ~~g~~l~~~~~---------g~~~~vv~lHG~~~~~--~~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~--------~~~ 76 (301)
T 3kda_A 17 VDGVKLHYVKG---------GQGPLVMLVHGFGQTW--YEWHQLMPELAKR-FTVIAPDLPGLGQSEPP--------KTG 76 (301)
T ss_dssp ETTEEEEEEEE---------ESSSEEEEECCTTCCG--GGGTTTHHHHTTT-SEEEEECCTTSTTCCCC--------SSC
T ss_pred eCCeEEEEEEc---------CCCCEEEEECCCCcch--hHHHHHHHHHHhc-CeEEEEcCCCCCCCCCC--------CCC
Confidence 48887765421 2457999999976554 3366667777777 99999999999976542 223
Q ss_pred ChHhHHHHHHHHHHHcCCCCCCc-EEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 574 NTFTDFIACAEYLIKNCYCTKEK-LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 574 ~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
.+++|+.+.+..+++. .+.++ +.++|+|+||.++..++.++|++++++|+.+|.
T Consensus 77 ~~~~~~~~~l~~~l~~--l~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 131 (301)
T 3kda_A 77 YSGEQVAVYLHKLARQ--FSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAP 131 (301)
T ss_dssp SSHHHHHHHHHHHHHH--HCSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSC
T ss_pred ccHHHHHHHHHHHHHH--cCCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccC
Confidence 4556666655555443 13356 999999999999999999999999999998875
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-12 Score=133.50 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=125.6
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++||.++... .|...+..|+++||.|+.+|.||+|.+... ......+++++.+.+..+++.- +.+
T Consensus 47 g~~vvllHG~~~~~~--~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~------~~~~~y~~~~~a~dl~~ll~~l--~~~ 116 (310)
T 1b6g_A 47 EDVFLCLHGEPTWSY--LYRKMIPVFAESGARVIAPDFFGFGKSDKP------VDEEDYTFEFHRNFLLALIERL--DLR 116 (310)
T ss_dssp SCEEEECCCTTCCGG--GGTTTHHHHHHTTCEEEEECCTTSTTSCEE------SCGGGCCHHHHHHHHHHHHHHH--TCC
T ss_pred CCEEEEECCCCCchh--hHHHHHHHHHhCCCeEEEeCCCCCCCCCCC------CCcCCcCHHHHHHHHHHHHHHc--CCC
Confidence 478999999765433 466677788889999999999999976431 0011234555555554444431 236
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccc--hhh---------cc-----------C-CCCCC----------
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD--VLT---------TM-----------L-DPTIP---------- 642 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d--~~~---------~~-----------~-~~~~~---------- 642 (758)
++.++|+|+||.++..++.++|++++++|+..+... ... .. . .....
T Consensus 117 ~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (310)
T 1b6g_A 117 NITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAP 196 (310)
T ss_dssp SEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTTHHHHHHHHHSCSSCCHHHHHHHHST
T ss_pred CEEEEEcChHHHHHHHHHHhChHhheEEEEeccccccCCccccchhhhhhccchHHHHHHHHhccCchhhhhhHHhhcCC
Confidence 899999999999999999999999999998876431 000 00 0 00000
Q ss_pred -CChhhhhccCC----CCCHHHHH-HHHh-cCc-----------ccccC-CCCCCeEEEeccCCCCCCCChHHHHHHHHH
Q 004368 643 -LTTAEWEEWGD----PWKEEFYF-YMKS-YSP-----------VDNVK-AQNYPHILVTAGLNDPRVMYSEPAKFVAKL 703 (758)
Q Consensus 643 -~~~~~~~e~g~----p~~~~~~~-~l~~-~sp-----------~~~i~-~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L 703 (758)
+.......|.. +....... .... ..+ ...+. ++++| +||++|++|..++ ..+.++.+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P-~Lvi~G~~D~~~~-~~~~~~~~~i 274 (310)
T 1b6g_A 197 TLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAISFWQNDWNGQ-TFMAIGMKDKLLG-PDVMYPMKAL 274 (310)
T ss_dssp TCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSE-EEEEEETTCSSSS-HHHHHHHHHH
T ss_pred CCCHHHHHHHhcccCCccchHHHHHHHHHhcccccchhhhhhhHhhhhhccccCc-eEEEeccCcchhh-hHHHHHHHhc
Confidence 00000001111 00000000 0000 000 12234 67888 9999999999999 8888887776
Q ss_pred HhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 704 REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
.... ...+.++ ++||.... ..+.+.+. +.+||.+
T Consensus 275 p~~~--~~~i~~~---~~GH~~~~-~p~~~~~~--i~~Fl~~ 308 (310)
T 1b6g_A 275 INGC--PEPLEIA---DAGHFVQE-FGEQVARE--ALKHFAE 308 (310)
T ss_dssp STTC--CCCEEET---TCCSCGGG-GHHHHHHH--HHHHHHH
T ss_pred cccc--ceeeecC---Ccccchhh-ChHHHHHH--HHHHHhc
Confidence 5332 2222235 89998766 66655554 5678764
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-11 Score=127.95 Aligned_cols=220 Identities=12% Similarity=0.040 Sum_probs=134.6
Q ss_pred eEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEec--------CCCCCCchhHHhc-c
Q 004368 497 TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQI--------RGGGELGRQWYEN-G 567 (758)
Q Consensus 497 ~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~--------RG~g~~G~~~~~~-~ 567 (758)
..+++.|++|++. .++.|+||.+||+.. .+.+||+++.+|. ||+.++|. |++. +
T Consensus 90 ~~~~~~i~lP~~~---~~p~Pvii~i~~~~~-------------~~~~G~a~~~~~~~~v~~~~~~gs~g~g~-f~~ly~ 152 (375)
T 3pic_A 90 ISFTVTITYPSSG---TAPYPAIIGYGGGSL-------------PAPAGVAMINFNNDNIAAQVNTGSRGQGK-FYDLYG 152 (375)
T ss_dssp EEEEEEEECCSSS---CSSEEEEEEETTCSS-------------CCCTTCEEEEECHHHHSCCSSGGGTTCSH-HHHHHC
T ss_pred eEEEEEEECCCCC---CCCccEEEEECCCcc-------------ccCCCeEEEEecccccccccCCCCcccee-cccccC
Confidence 3578888888764 377899999988411 1458999999987 66656775 5421 1
Q ss_pred c-ccCCcChH--hHHHHHHHHHHHcC--CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccC-----
Q 004368 568 K-FLKKKNTF--TDFIACAEYLIKNC--YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML----- 637 (758)
Q Consensus 568 ~-~~~~~~~~--~D~~~~~~~l~~~~--~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~----- 637 (758)
. ..++.... =|+..+++||..+. .+|++||+++|+|+||..++++++.. ++++++|..++..+-...+.
T Consensus 153 ~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~g~~G~~~~R~~~~~ 231 (375)
T 3pic_A 153 SSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQESGAGGSACWRISDYL 231 (375)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESCCTTTTSCHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccCCCCchhhhhhhhhh
Confidence 1 11111111 27888999999998 99999999999999999999999986 48999999987654221110
Q ss_pred ---CCC----------CCCChhhhhccCCCCCHHHHHHHHhcCccc--ccCCCCCC-eEEEeccCCCCCCCChHHHHHHH
Q 004368 638 ---DPT----------IPLTTAEWEEWGDPWKEEFYFYMKSYSPVD--NVKAQNYP-HILVTAGLNDPRVMYSEPAKFVA 701 (758)
Q Consensus 638 ---~~~----------~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~--~i~~~~~P-~~Li~~G~~D~~V~~~~~~~~~~ 701 (758)
.+. ..|....+..|.+-. ..-|++ .+-..-.| |+||+.| +|..+++......+.
T Consensus 232 ~~~Ge~v~~~~~~~~e~~Wf~~~~~~y~~~~---------~~lP~D~h~L~ALiAPRPllv~~g-~D~w~~~~g~~~~~~ 301 (375)
T 3pic_A 232 KSQGANIQTASEIIGEDPWFSTTFNSYVNQV---------PVLPFDHHSLAALIAPRGLFVIDN-NIDWLGPQSCFGCMT 301 (375)
T ss_dssp HHTTCCCCCHHHHTTTCSCSCGGGGGTTTCG---------GGSSCCHHHHHHTSTTSEEEEECC-CCGGGCHHHHHHHHH
T ss_pred cccCccccccccccCcccccccchhhhcccc---------cccCcCHHHHHHHhCCceEEEecC-CCcccCcHHHHHHHH
Confidence 011 112222222332100 001111 01111222 6999999 999998876654444
Q ss_pred HH----HhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCC
Q 004368 702 KL----REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 702 ~L----~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
++ +..|.+.++-+ ....+++|...... . ....++||.++|...
T Consensus 302 ~a~~VY~~lG~~d~~~~-~~~ggH~Hc~fp~~---~--~~~~~~F~~k~L~~~ 348 (375)
T 3pic_A 302 AAHMAWQALGVSDHMGY-SQIGAHAHCAFPSN---Q--QSQLTAFVQKFLLGQ 348 (375)
T ss_dssp HHHHHHHHTTCGGGEEE-ECCSCCSTTCCCGG---G--HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHcCCccceEE-EeeCCCccccCCHH---H--HHHHHHHHHHHhCCC
Confidence 44 44576666554 33445677432211 1 123579999999764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-10 Score=123.46 Aligned_cols=293 Identities=15% Similarity=0.133 Sum_probs=173.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++|+++....+ .|+++|+++++.... ........++|+||| .++++... ...|+++++.
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~----~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----~~~v~~~d~~ 146 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASS----TLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG----DKTVSVINTV 146 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTT----EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT----TTEEEEEETT
T ss_pred CccceEECCCCCEEEEEECCCC----EEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCC----CCEEEEEECC
Confidence 4678899999999988765444 699999999987653 223335669999999 56566532 2368899987
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce-eeEEeecCCEEEEEEc
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRR 348 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~ 348 (758)
++. ....+.... ....+.|+|||++|++.... ...|+++|+.+++ ........... ...++++|+.+++...
T Consensus 147 ~~~--~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~--~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 147 TKA--VINTVSVGR--SPKGIAVTPDGTKVYVANFD--SMSISVIDTVTNS-VIDTVKVEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp TTE--EEEEEECCS--SEEEEEECTTSSEEEEEETT--TTEEEEEETTTTE-EEEEEECSSEEEEEEECTTSSEEEEEEE
T ss_pred CCc--EEEEEecCC--CcceEEECCCCCEEEEEeCC--CCEEEEEECCCCe-EEEEEecCCCccceEECCCCCEEEEEec
Confidence 762 233333222 22467899999998776443 2468899998875 33333322222 2348999998888775
Q ss_pred CCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCc-e---
Q 004368 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGK-S--- 422 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~-~--- 422 (758)
.. .+..|..+|+.+. .....++.... +..+.+. ++.+++....++ .+++|++.. ++....+.... .
T Consensus 220 ~~--~~~~v~~~d~~~~-~~~~~~~~~~~--~~~~~~s~dg~~l~~s~~~d~--~v~v~d~~~-~~~~~~~~~~~~~~~~ 291 (391)
T 1l0q_A 220 DK--YFNTVSMIDTGTN-KITARIPVGPD--PAGIAVTPDGKKVYVALSFXN--TVSVIDTAT-NTITATMAVGKNPYAS 291 (391)
T ss_dssp CS--SCCEEEEEETTTT-EEEEEEECCSS--EEEEEECTTSSEEEEEETTTT--EEEEEETTT-TEEEEEEECSSSEECC
T ss_pred Cc--CCCcEEEEECCCC-eEEEEEecCCC--ccEEEEccCCCEEEEEcCCCC--EEEEEECCC-CcEEEEEECCcCCCcc
Confidence 32 2467889998763 22234443332 3455555 556766665555 477888874 33221111110 0
Q ss_pred ---ee-ccCcc-cccCCCCcccCCcEEE----EEEecCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCceeEEEEeeC
Q 004368 423 ---VE-FIDPV-YSIDPSESVFSSRILR----FHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASA 493 (758)
Q Consensus 423 ---i~-~p~~~-~~i~~~~~~~d~~~l~----~~~sS~~~P~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 493 (758)
+. .|... ..+..++......... +.+.+.......|.+|+.++..... ..+. ..|.+.+.-...+++++
T Consensus 292 ~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~~-~~~~-~~~~~~g~y~~~~~~~~ 369 (391)
T 1l0q_A 292 GQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSKK-QNPT-HTYSETGIYTVRLTVSN 369 (391)
T ss_dssp SSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEECS-SSCE-ECCSSCEEEEEEEEEEE
T ss_pred ceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccCc-CCCe-EEeCCCceEEEEEEEEC
Confidence 11 11100 0011111111111110 2345666677889999988874211 1111 24677777778888999
Q ss_pred CCC--eEEEEEEEeeccc
Q 004368 494 SDG--TQIPICIVYRKNL 509 (758)
Q Consensus 494 ~dG--~~i~~~l~~p~~~ 509 (758)
.+| ++++...++++..
T Consensus 370 ~~g~~~~~~~~~v~~~~~ 387 (391)
T 1l0q_A 370 SNGTDSQISTVNVVLKGS 387 (391)
T ss_dssp TTEEEEEEEEEEEECTTS
T ss_pred CCCcEEEEEEEEEEcCCC
Confidence 999 5788877776643
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-11 Score=128.12 Aligned_cols=220 Identities=12% Similarity=0.009 Sum_probs=133.3
Q ss_pred EEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEec--------CCCCCCchhHHhcccc
Q 004368 498 QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQI--------RGGGELGRQWYENGKF 569 (758)
Q Consensus 498 ~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~--------RG~g~~G~~~~~~~~~ 569 (758)
.+++.|++|++. ++.|+||.+||+.. .+.+||+++.+|. +|+.++|. |+..-..
T Consensus 124 sf~~~i~lP~g~----~P~Pvii~~~~~~~-------------~~~~G~A~i~f~~~~va~d~~~gsrG~g~-f~~ly~~ 185 (433)
T 4g4g_A 124 SFSASIRKPSGA----GPFPAIIGIGGASI-------------PIPSNVATITFNNDEFGAQMGSGSRGQGK-FYDLFGR 185 (433)
T ss_dssp EEEEEEECCSSS----CCEEEEEEESCCCS-------------CCCTTSEEEEECHHHHSCCSSGGGTTCSH-HHHHHCT
T ss_pred EEEEEEECCCCC----CCccEEEEECCCcc-------------ccCCCeEEEEeCCcccccccCCCcCCccc-cccccCC
Confidence 468888888653 67899999887411 1457999999987 45556776 5532111
Q ss_pred cCCcChH----hHHHHHHHHHHH----cCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccC----
Q 004368 570 LKKKNTF----TDFIACAEYLIK----NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML---- 637 (758)
Q Consensus 570 ~~~~~~~----~D~~~~~~~l~~----~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~---- 637 (758)
......+ =|+..+++||.. +..+|++||+++|+|+||..++.+++.. ++++++|+.++..+-...+.
T Consensus 186 ~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~sg~~G~~~~R~~~~ 264 (433)
T 4g4g_A 186 DHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQESGAGGAACWRISDQ 264 (433)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEESCCTTTTSCHHHHHH
T ss_pred ccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEecCCCCchhhhhhchh
Confidence 1111111 278889999999 8899999999999999999999999986 48999999987655222110
Q ss_pred ----CCC----------CCCChhhhhccCCCCCHHHHHHHHhcCcccc--cCCCCCC-eEEEeccCCCCCCCChHHHHHH
Q 004368 638 ----DPT----------IPLTTAEWEEWGDPWKEEFYFYMKSYSPVDN--VKAQNYP-HILVTAGLNDPRVMYSEPAKFV 700 (758)
Q Consensus 638 ----~~~----------~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~--i~~~~~P-~~Li~~G~~D~~V~~~~~~~~~ 700 (758)
.+. ..|....+.+|.+-. ..-|+++ +-..-.| |+||+.| +|..+++.....-+
T Consensus 265 ~~~~Ge~v~~~~~~~ge~~Wf~~~f~~y~~~~---------~~LPfD~heL~ALiAPRPlLv~~g-~D~w~~p~g~~~a~ 334 (433)
T 4g4g_A 265 QKAAGANIQTAAQIITENPWFSRNFDPHVNSI---------TSVPQDHHLLAALIVPRGLAVFEN-NIDWLGPVSTTGCM 334 (433)
T ss_dssp HHHTTCCCCCHHHHTTTCCCSCTTTGGGTTCG---------GGSSCCGGGHHHHHTTSEEEEEEC-CCTTTCHHHHHHHH
T ss_pred hcccCcchhhhhcccCCccccchhhHhhcccc---------ccCCcCHHHHHHhhCCceEEEecC-CCCcCCcHHHHHHH
Confidence 001 112212222232100 0012111 1111122 6999999 99888876555444
Q ss_pred HHH----HhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 004368 701 AKL----REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPS 752 (758)
Q Consensus 701 ~~L----~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 752 (758)
.++ +..|.+.++-+. ...+++|...... . ....++||.++|.....
T Consensus 335 ~aa~~VY~~lGa~d~l~~~-~~ggH~Hc~fp~~---~--r~~~~~F~~k~Lkg~~~ 384 (433)
T 4g4g_A 335 AAGRLIYKAYGVPNNMGFS-LVGGHNHCQFPSS---Q--NQDLNSYINYFLLGQGS 384 (433)
T ss_dssp HHHHHHHHHHTCGGGEEEE-ECCSSCTTCCCGG---G--HHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHcCCccceEEE-eeCCCCcccCCHH---H--HHHHHHHHHHHhCCCCC
Confidence 444 345666655443 3346677532221 1 12357999999976543
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=134.40 Aligned_cols=249 Identities=15% Similarity=0.143 Sum_probs=143.4
Q ss_pred eeEEEEeeCC-CCeEEEEEEEeeccccc----cCCCCCEEEEecCCCccCCCCCCChHHH-HHHHcCcEEEEEecC--C-
Q 004368 485 FTERKWASAS-DGTQIPICIVYRKNLVK----LDGSDPLLLYGYGSYEICNDPAFNSSRL-SLLDRGFIFAIAQIR--G- 555 (758)
Q Consensus 485 ~~~~~~~~s~-dG~~i~~~l~~p~~~~~----~~~~~P~vl~~hGg~~~~~~~~~~~~~~-~l~~~G~~v~~~~~R--G- 555 (758)
...++++.|. -|.++.+.|+.|+++.. +++++|+|.+.||..+....+.-...++ .+.+.|.+++.++.. +
T Consensus 13 ~~~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~~v~p~~~p~~~ 92 (299)
T 4fol_A 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRGD 92 (299)
T ss_dssp EEEEEEEECTTTSSEEEEEEEECGGGGCC------CBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEEECSSCCST
T ss_pred EEEEEEEECcccCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCChHHHHHhchHhHHHHHcCchhhccCCCccee
Confidence 4566677664 47889999999998621 3567999999999655432211111223 445579999998742 1
Q ss_pred ----CC------CCchhHHhccccc--CCcChH-----hHHHHHHHHHH----HcCCCCCCcEEEEEeChhHHHHHHHHh
Q 004368 556 ----GG------ELGRQWYENGKFL--KKKNTF-----TDFIACAEYLI----KNCYCTKEKLCIEGRSAGGLLIGAVLN 614 (758)
Q Consensus 556 ----~g------~~G~~~~~~~~~~--~~~~~~-----~D~~~~~~~l~----~~~~~d~~~i~i~G~S~GG~l~~~~~~ 614 (758)
.. +.+..|+...... .+...+ +|+...++.-- .+...+.++.+|.|+||||+-++.++.
T Consensus 93 ~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl~~al 172 (299)
T 4fol_A 93 EVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGYL 172 (299)
T ss_dssp TSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHHHHHH
T ss_pred ecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHHHHHH
Confidence 10 0111111111000 011122 33333333211 122345678999999999999998888
Q ss_pred hC--CCceeEEEEcCCccchhhccCCCCCCCChhhhhc-cCCCCCHHHHHHHHhcCccccc---CCCCCCeEEEeccCCC
Q 004368 615 MR--PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEE-WGDPWKEEFYFYMKSYSPVDNV---KAQNYPHILVTAGLND 688 (758)
Q Consensus 615 ~~--p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e-~g~p~~~~~~~~l~~~sp~~~i---~~~~~P~~Li~~G~~D 688 (758)
++ |+.|+++.+.+|+.+.... ++....+.. +|... ..+..+++...+ ++...|+++|.+|+.|
T Consensus 173 ~~~~~~~~~~~~s~s~~~~p~~~------~~~~~~~~~~~g~~~-----~~~~~~d~~~l~~~~~~~~~~~i~id~G~~D 241 (299)
T 4fol_A 173 KGYSGKRYKSCSAFAPIVNPSNV------PWGQKAFKGYLGEEK-----AQWEAYDPCLLIKNIRHVGDDRILIHVGDSD 241 (299)
T ss_dssp HTGGGTCCSEEEEESCCCCGGGS------HHHHHHHHHHTC----------CGGGCHHHHGGGSCCCTTCCEEEEEETTC
T ss_pred hCCCCCceEEEEecccccCcccc------cccccccccccccch-----hhhhhcCHHHHHHhcccCCCCceEEEecCCC
Confidence 74 6789999999998875432 121112222 23221 112344554333 3334556999999999
Q ss_pred CCCCCh-HHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 689 PRVMYS-EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 689 ~~V~~~-~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
....-. .+..|.+++++++.+.. +.|+..+|.+|. ..-.-....+.++|..++||+
T Consensus 242 ~f~~~~l~~~~f~~a~~~~g~~~~-~~~r~~~GydHs----y~f~~~fi~dhl~fha~~Lgl 298 (299)
T 4fol_A 242 PFLEEHLKPELLLEAVKATSWQDY-VEIKKVHGFDHS----YYFVSTFVPEHAEFHARNLGL 298 (299)
T ss_dssp TTHHHHTCTHHHHHHHTTSTTTTC-EEEEEETTCCSS----HHHHHHHHHHHHHHHHHHTTC
T ss_pred cchhhhcCHHHHHHHHHhcCCCce-EEEEeCCCCCCC----HHHHHHHHHHHHHHHHHhcCC
Confidence 864321 24679999999988764 456655677894 222333355678999999986
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.6e-13 Score=135.42 Aligned_cols=209 Identities=14% Similarity=0.090 Sum_probs=120.4
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
++.|+||++||..+. ...|......|. .+|.|+.+|+||.|.... .....+++++.+.+..+++.- +
T Consensus 18 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~--------~~~~~~~~~~~~~~~~~l~~~--~ 84 (267)
T 3fla_A 18 DARARLVCLPHAGGS--ASFFFPLAKALA-PAVEVLAVQYPGRQDRRH--------EPPVDSIGGLTNRLLEVLRPF--G 84 (267)
T ss_dssp TCSEEEEEECCTTCC--GGGGHHHHHHHT-TTEEEEEECCTTSGGGTT--------SCCCCSHHHHHHHHHHHTGGG--T
T ss_pred CCCceEEEeCCCCCC--chhHHHHHHHhc-cCcEEEEecCCCCCCCCC--------CCCCcCHHHHHHHHHHHHHhc--C
Confidence 467999999997553 233544445554 469999999999875432 112335666666655555442 4
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCc----eeEEEEcCCccchhhccCCCCCCCChhhh----hccC-CC----CCH---
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDL----FKAAVAAVPFVDVLTTMLDPTIPLTTAEW----EEWG-DP----WKE--- 657 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~~~~d~~~~~~~~~~~~~~~~~----~e~g-~p----~~~--- 657 (758)
.+++.++|+|+||.+++.++.++|++ ++++++..+........ ..........+ ..++ .+ .++
T Consensus 85 ~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (267)
T 3fla_A 85 DRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRD-DDVRGASDERLVAELRKLGGSDAAMLADPELL 163 (267)
T ss_dssp TSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCC-SCTTCCCHHHHHHHHHHTCHHHHHHHHSHHHH
T ss_pred CCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccc-hhhcccchHHHHHHHHHhcCcchhhccCHHHH
Confidence 57899999999999999999999986 78888877653221110 00000111010 0111 00 011
Q ss_pred --------HHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCCh
Q 004368 658 --------EFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGR 729 (758)
Q Consensus 658 --------~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~ 729 (758)
..+..+..+.+... .++++| +|+++|++|..+++..+.++.+.+.. +.+++.++ + ||......
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~---g-gH~~~~~~ 234 (267)
T 3fla_A 164 AMVLPAIRSDYRAVETYRHEPG-RRVDCP-VTVFTGDHDPRVSVGEARAWEEHTTG---PADLRVLP---G-GHFFLVDQ 234 (267)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT-CCBSSC-EEEEEETTCTTCCHHHHHGGGGGBSS---CEEEEEES---S-STTHHHHT
T ss_pred HHHHHHHHHHHHhhhccccccc-CcCCCC-EEEEecCCCCCCCHHHHHHHHHhcCC---CceEEEec---C-CceeeccC
Confidence 11222233333222 456888 99999999999998777776554432 34566664 6 99753222
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 004368 730 FERLREAAFTYTFLMRAL 747 (758)
Q Consensus 730 ~~~~~~~~~~~~fl~~~l 747 (758)
.+.+. ..+.+||.+..
T Consensus 235 ~~~~~--~~i~~fl~~~~ 250 (267)
T 3fla_A 235 AAPMI--ATMTEKLAGPA 250 (267)
T ss_dssp HHHHH--HHHHHHTC---
T ss_pred HHHHH--HHHHHHhcccc
Confidence 22222 22456665543
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=139.13 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=85.5
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 573 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~ 573 (758)
.||.++.....-|+ +++.|+||++||..+.. ..|......|+++||.|+.+|+||.|.....- ....
T Consensus 10 ~~g~~l~y~~~G~~-----~~~~~~vv~~hG~~~~~--~~~~~~~~~l~~~g~~vi~~d~~g~g~s~~~~------~~~~ 76 (356)
T 2e3j_A 10 CRGTRIHAVADSPP-----DQQGPLVVLLHGFPESW--YSWRHQIPALAGAGYRVVAIDQRGYGRSSKYR------VQKA 76 (356)
T ss_dssp ETTEEEEEEEECCT-----TCCSCEEEEECCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCCCC------SGGG
T ss_pred cCCeEEEEEEecCC-----CCCCCEEEEECCCCCcH--HHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCC------cccc
Confidence 47888876543222 12468999999976543 33566677888899999999999988654210 0011
Q ss_pred ChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc
Q 004368 574 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 574 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
.++.++.+.+..+++. .+.+++.++|+|+||.++..++.++|++++++|+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 77 YRIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp GSHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred cCHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 2345555544444433 245799999999999999999999999999999877543
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-12 Score=134.39 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=75.4
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++||..+... .|...+..|.+ +|.|+.+|+||+|.+... ....+++++.+.+..+++.- ..+
T Consensus 29 ~~pvvllHG~~~~~~--~w~~~~~~L~~-~~~via~Dl~G~G~S~~~--------~~~~~~~~~a~dl~~ll~~l--~~~ 95 (316)
T 3afi_E 29 APVVLFLHGNPTSSH--IWRNILPLVSP-VAHCIAPDLIGFGQSGKP--------DIAYRFFDHVRYLDAFIEQR--GVT 95 (316)
T ss_dssp SCEEEEECCTTCCGG--GGTTTHHHHTT-TSEEEEECCTTSTTSCCC--------SSCCCHHHHHHHHHHHHHHT--TCC
T ss_pred CCeEEEECCCCCchH--HHHHHHHHHhh-CCEEEEECCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHc--CCC
Confidence 358999999766543 35555666654 599999999999976431 12345677777666655542 237
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
++.++|+|+||.+++.++.++|++++++|+..+
T Consensus 96 ~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 128 (316)
T 3afi_E 96 SAYLVAQDWGTALAFHLAARRPDFVRGLAFMEF 128 (316)
T ss_dssp SEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEE
T ss_pred CEEEEEeCccHHHHHHHHHHCHHhhhheeeecc
Confidence 899999999999999999999999999998765
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-14 Score=158.79 Aligned_cols=221 Identities=16% Similarity=0.126 Sum_probs=135.1
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC-CCCChHHHHHHHcC-cEEEEEecCC-CCCCchh-HHhccc
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLDRG-FIFAIAQIRG-GGELGRQ-WYENGK 568 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G-~~v~~~~~RG-~g~~G~~-~~~~~~ 568 (758)
+.|. +.+.++.|+.. .++.|+||++|||...... ..+......|+++| ++|+.+|||. ..+++.. ... .
T Consensus 79 ~edc--L~l~v~~P~~~---~~~~PviV~iHGGg~~~g~~~~~~~~~~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~--~ 151 (489)
T 1qe3_A 79 SEDC--LYVNVFAPDTP---SQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFD--E 151 (489)
T ss_dssp CSCC--CEEEEEEECSS---CCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTC--T
T ss_pred CCCC--CEEEEEeCCCC---CCCCCEEEEECCCccccCCCCCcccCHHHHHhcCCEEEEecCccCcccccCcccccc--c
Confidence 4455 44555667643 2348999999998633222 11222346777775 9999999993 3233221 000 0
Q ss_pred ccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhC--CCceeEEEEcCCccchhhccCCCCCCC
Q 004368 569 FLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFVDVLTTMLDPTIPL 643 (758)
Q Consensus 569 ~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~~d~~~~~~~~~~~~ 643 (758)
...+...+.|+.++++|+.++ ...|++||+|+|+|+||++++.++... +++|+++|+.+|..++..... ....
T Consensus 152 ~~~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~--~~~~ 229 (489)
T 1qe3_A 152 AYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQ--AAST 229 (489)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHH--HHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHH--HHHH
Confidence 123344578999999999775 246999999999999999998888753 579999999999764322100 0000
Q ss_pred Chhhh-hccCCCC-CHHH------HHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEE
Q 004368 644 TTAEW-EEWGDPW-KEEF------YFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 715 (758)
Q Consensus 644 ~~~~~-~e~g~p~-~~~~------~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 715 (758)
...+ ...|.+. ..+. -+.+...+++.+......| .+++++..|.+|.+.++.+++++.+..+++. ++
T Consensus 230 -~~~~~~~~g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~~~~~-~~~~~p~~D~~~~~~~~~~~~~~~~~~~vp~---~~ 304 (489)
T 1qe3_A 230 -AAAFLQVLGINESQLDRLHTVAAEDLLKAADQLRIAEKENIF-QLFFQPALDPKTLPEEPEKSIAEGAASGIPL---LI 304 (489)
T ss_dssp -HHHHHHHHTCCTTCGGGGGTSCHHHHHHHHHHHHTSTTCCTT-SCSSCCBCBTTTBCSCHHHHHHTTTTTTCCE---EE
T ss_pred -HHHHHHHcCCCHHHHHHHHcCCHHHHHHHHHHhhhccccccC-CccceEeECCeecCcCHHHHHhcCCCCCCCE---EE
Confidence 0001 1234331 1110 1112222333222122333 6888999999999999999998887777654 44
Q ss_pred EecCCCCCCCCC
Q 004368 716 KCELGAGHFSKS 727 (758)
Q Consensus 716 ~~~~~~gH~~~~ 727 (758)
-...++||.+..
T Consensus 305 g~~~~Eg~~~~~ 316 (489)
T 1qe3_A 305 GTTRDEGYLFFT 316 (489)
T ss_dssp EEETTGGGGTCC
T ss_pred eeecchhHhhcc
Confidence 445589997643
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.38 E-value=9.7e-13 Score=133.88 Aligned_cols=207 Identities=15% Similarity=0.171 Sum_probs=116.4
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
..|.||++||..+.. ..|......|.++ |.|+.+|+||+|.+... ...+++++.+.+..+++. ...
T Consensus 15 ~~~~vvllHG~~~~~--~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~---------~~~~~~~~a~dl~~~l~~--l~~ 80 (255)
T 3bf7_A 15 NNSPIVLVHGLFGSL--DNLGVLARDLVND-HNIIQVDVRNHGLSPRE---------PVMNYPAMAQDLVDTLDA--LQI 80 (255)
T ss_dssp CCCCEEEECCTTCCT--TTTHHHHHHHTTT-SCEEEECCTTSTTSCCC---------SCCCHHHHHHHHHHHHHH--HTC
T ss_pred CCCCEEEEcCCcccH--hHHHHHHHHHHhh-CcEEEecCCCCCCCCCC---------CCcCHHHHHHHHHHHHHH--cCC
Confidence 357799999966543 3466655666554 99999999999876431 022344444433333332 123
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcC--Cccch-------hhccC--CCCCCCChhhhhc-cCC-CCCHHHHH
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV--PFVDV-------LTTML--DPTIPLTTAEWEE-WGD-PWKEEFYF 661 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~--~~~d~-------~~~~~--~~~~~~~~~~~~e-~g~-p~~~~~~~ 661 (758)
+++.++|+|+||.+++.++.++|++++++|+.. |.... ...+. ............+ +.. ..++....
T Consensus 81 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (255)
T 3bf7_A 81 DKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ 160 (255)
T ss_dssp SCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHTTTCCCHHHHH
T ss_pred CCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHhhhcchhHHHH
Confidence 689999999999999999999999999998854 22110 00000 0000000000000 000 00110000
Q ss_pred H--------------------HHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCC
Q 004368 662 Y--------------------MKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 721 (758)
Q Consensus 662 ~--------------------l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 721 (758)
. +........+.++++| +|+++|++|..+++..+.++.+.+. ..++++++ ++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~---~~ 232 (255)
T 3bf7_A 161 FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHP-ALFIPGGNSPYVSEQYRDDLLAQFP----QARAHVIA---GA 232 (255)
T ss_dssp HHHTTEETTEESSCHHHHHHTHHHHHCCCCCCCCCSC-EEEECBTTCSTTCGGGHHHHHHHCT----TEEECCBT---TC
T ss_pred HHHHhccCCceeecHHHHHhhhhhccccccccccCCC-eEEEECCCCCCCCHHHHHHHHHHCC----CCeEEEeC---CC
Confidence 0 0000001234567888 9999999999999988877765543 23444454 89
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHH
Q 004368 722 GHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 722 gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
||.......+.+.+. +.+||.+
T Consensus 233 gH~~~~e~p~~~~~~--i~~fl~~ 254 (255)
T 3bf7_A 233 GHWVHAEKPDAVLRA--IRRYLND 254 (255)
T ss_dssp CSCHHHHCHHHHHHH--HHHHHHT
T ss_pred CCccccCCHHHHHHH--HHHHHhc
Confidence 997543333333332 4677754
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.38 E-value=8.7e-11 Score=136.87 Aligned_cols=208 Identities=7% Similarity=-0.065 Sum_probs=136.5
Q ss_pred EEEeeEEECCCCCEEEEEEeCC-----CCeEEEEEEEECCC------Cceeecc-cc-CcceeEEEecCC-eEEEEEeCC
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTK-----GDEIYTVYVIDIET------GTPVGKP-LV-GVTASVEWAGNE-ALVYITMDE 256 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~-----G~e~~~l~v~dl~~------g~~~~~~-~~-~~~~~~~wspDg-~l~y~~~~~ 256 (758)
..+..+.|||||++|||+.... +....+|+++|+++ ++...+. .. .....++||||| .|+|++.+.
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~ 209 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDH 209 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECT
T ss_pred ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCC
Confidence 4677899999999999997641 13357999999998 6665543 22 235568999999 898888654
Q ss_pred CC---CCceEEEEEcCC-CCC-CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc
Q 004368 257 IL---RPDKAWLHKLEA-DQS-NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG 331 (758)
Q Consensus 257 ~~---~~~~v~~~~l~~-~~~-~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 331 (758)
.. ...+||++++.+ +.. +...+.... ......+.|||||+ |++.++..+...||++|+++++ ++.++.....
T Consensus 210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~ 286 (662)
T 3azo_A 210 PRMPWEGTELKTARVTEDGRFADTRTLLGGP-EEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA-ATQLCRREEE 286 (662)
T ss_dssp TCCTTTCEEEEEEEECTTSCEEEEEEEEEET-TBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC-EEESSCCSSB
T ss_pred CCCCCCCcEEEEEEECCCCcccccEEeCCCC-CceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc-eeeccccccc
Confidence 32 235799999973 411 123333322 23344688999999 7777766666789999998776 6676654322
Q ss_pred e----------eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeE-EEeCCEEEEEEEeCC-e
Q 004368 332 V----------DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDI-QLFIDHLAVYEREGG-L 399 (758)
Q Consensus 332 ~----------~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~g-~ 399 (758)
. ...++++|+ +++..+. + ..+|+.+++++. ..+.+..+ ...+..+ +++++.+++...... .
T Consensus 287 ~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~--~~~l~~~d~~~~-~~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~ 359 (662)
T 3azo_A 287 FAGPLWTPGMRWFAPLANGL-IAVVHGK-G--AAVLGILDPESG-ELVDAAGP--WTEWAATLTVSGTRAVGVAASPRTA 359 (662)
T ss_dssp SSCCCCSTTCCSEEECTTSC-EEEEEBS-S--SCEEEEEETTTT-EEEECCSS--CCEEEEEEEEETTEEEEEEEETTEE
T ss_pred ccCccccccCceEeEeCCCE-EEEEEEc-C--ccEEEEEECCCC-cEEEecCC--CCeEEEEEecCCCEEEEEEcCCCCC
Confidence 2 223556666 5555554 3 578999998752 33334333 2235566 888998887776544 4
Q ss_pred eEEEEEEcC
Q 004368 400 QKITTYRLP 408 (758)
Q Consensus 400 ~~l~v~~l~ 408 (758)
..+++++++
T Consensus 360 ~~i~~~d~~ 368 (662)
T 3azo_A 360 YEVVELDTV 368 (662)
T ss_dssp EEEEEEETT
T ss_pred CEEEEEECC
Confidence 466666665
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=131.99 Aligned_cols=210 Identities=13% Similarity=0.051 Sum_probs=124.1
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++||.... ...|......|.++||.|+.+|+||+|.+.... ....+++++.+.+..+++.-. ..+
T Consensus 3 ~~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~l~-~~~ 72 (257)
T 3c6x_A 3 FAHFVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAASGVDPRQI-------EEIGSFDEYSEPLLTFLEALP-PGE 72 (257)
T ss_dssp CCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHTHHHHHHHHTSC-TTC
T ss_pred CCcEEEEcCCccC--cCCHHHHHHHHHhCCCEEEEeCCCCCCCCCCCc-------ccccCHHHHHHHHHHHHHhcc-ccC
Confidence 3679999996533 334677778888899999999999999764310 112456666666655555421 126
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc-c-------hhhccC--CCCC-CC----------------Chhhh
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV-D-------VLTTML--DPTI-PL----------------TTAEW 648 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~-d-------~~~~~~--~~~~-~~----------------~~~~~ 648 (758)
++.++||||||+++..++.++|++++++|+.++.. . +..... .... .. ....+
T Consensus 73 ~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (257)
T 3c6x_A 73 KVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTL 152 (257)
T ss_dssp CEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHH
T ss_pred CeEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCCCccccccccHHH
Confidence 89999999999999999999999999999876532 1 000000 0000 00 00000
Q ss_pred -h-ccCCCCCHHHHHHHHh-cCcc----------ccc--CC-CCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCce
Q 004368 649 -E-EWGDPWKEEFYFYMKS-YSPV----------DNV--KA-QNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 712 (758)
Q Consensus 649 -~-e~g~p~~~~~~~~l~~-~sp~----------~~i--~~-~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~ 712 (758)
. .+......+....... ..|. ..+ .. .++| +|+++|++|..+|+..++++++.+. ..++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~G~~D~~~p~~~~~~~~~~~~----~~~~ 227 (257)
T 3c6x_A 153 LRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIK-KIYVWTDQDEIFLPEFQLWQIENYK----PDKV 227 (257)
T ss_dssp HHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTTGGGSC-EEEEECTTCSSSCHHHHHHHHHHSC----CSEE
T ss_pred HHHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhhcCccc-EEEEEeCCCcccCHHHHHHHHHHCC----CCeE
Confidence 0 0000011111111110 0110 011 11 2577 9999999999999988888877653 3456
Q ss_pred EEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 713 LLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 713 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
++++ ++||.......+.+.+. +.+|+.+
T Consensus 228 ~~i~---~~gH~~~~e~P~~~~~~--l~~f~~~ 255 (257)
T 3c6x_A 228 YKVE---GGDHKLQLTKTKEIAEI--LQEVADT 255 (257)
T ss_dssp EECC---SCCSCHHHHSHHHHHHH--HHHHHHH
T ss_pred EEeC---CCCCCcccCCHHHHHHH--HHHHHHh
Confidence 6665 99997544444444443 4567653
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=134.58 Aligned_cols=103 Identities=11% Similarity=0.124 Sum_probs=76.6
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++||..+... .|...+..|.+ +|.|+.+|+||+|.+... .....+++++.+.+..+++. ...+
T Consensus 16 g~~vvllHG~~~~~~--~~~~~~~~L~~-~~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~~~dl~~~l~~--l~~~ 83 (269)
T 2xmz_A 16 NQVLVFLHGFLSDSR--TYHNHIEKFTD-NYHVITIDLPGHGEDQSS-------MDETWNFDYITTLLDRILDK--YKDK 83 (269)
T ss_dssp SEEEEEECCTTCCGG--GGTTTHHHHHT-TSEEEEECCTTSTTCCCC-------TTSCCCHHHHHHHHHHHHGG--GTTS
T ss_pred CCeEEEEcCCCCcHH--HHHHHHHHHhh-cCeEEEecCCCCCCCCCC-------CCCccCHHHHHHHHHHHHHH--cCCC
Confidence 356999999765543 35555566655 599999999999976531 01124567777766666654 2347
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
++.++|+|+||.++..++.++|++++++|+.++..
T Consensus 84 ~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~ 118 (269)
T 2xmz_A 84 SITLFGYSMGGRVALYYAINGHIPISNLILESTSP 118 (269)
T ss_dssp EEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCS
T ss_pred cEEEEEECchHHHHHHHHHhCchheeeeEEEcCCc
Confidence 99999999999999999999999999999988643
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-12 Score=133.10 Aligned_cols=124 Identities=21% Similarity=0.199 Sum_probs=80.9
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhc
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 566 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~ 566 (758)
+...+.+.||.+|.....-++ .+.|.||++||..+.. ..|...+..|.+ ||.|+.+|+||+|.+...-
T Consensus 6 ~~~~~~~~~g~~l~~~~~g~~------~~~~~vvllHG~~~~~--~~~~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~--- 73 (285)
T 3bwx_A 6 EDRYWTSSDGLRLHFRAYEGD------ISRPPVLCLPGLTRNA--RDFEDLATRLAG-DWRVLCPEMRGRGDSDYAK--- 73 (285)
T ss_dssp EEEEEECTTSCEEEEEEECBC------TTSCCEEEECCTTCCG--GGGHHHHHHHBB-TBCEEEECCTTBTTSCCCS---
T ss_pred ccCeeecCCCceEEEEEcCCC------CCCCcEEEECCCCcch--hhHHHHHHHhhc-CCEEEeecCCCCCCCCCCC---
Confidence 345566778988876533211 1247799999965443 335555555554 9999999999998764310
Q ss_pred ccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcC
Q 004368 567 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV 627 (758)
Q Consensus 567 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 627 (758)
.....+++++.+.+..+++. ...+++.++|+|+||.++..++.++|++++++|+..
T Consensus 74 ---~~~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~ 129 (285)
T 3bwx_A 74 ---DPMTYQPMQYLQDLEALLAQ--EGIERFVAIGTSLGGLLTMLLAAANPARIAAAVLND 129 (285)
T ss_dssp ---SGGGCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEES
T ss_pred ---CccccCHHHHHHHHHHHHHh--cCCCceEEEEeCHHHHHHHHHHHhCchheeEEEEec
Confidence 01112334333333322222 123689999999999999999999999999999853
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=135.52 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=79.9
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHc--CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDR--GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 591 (758)
+..|.||++||..+.. ..|......|.++ ||.|+.+|+||+|...... ...++|+.+.+..+.+..
T Consensus 34 ~~~~~vvllHG~~~~~--~~~~~~~~~L~~~~~g~~vi~~D~~G~G~s~~~~---------~~~~~~~~~~l~~~~~~~- 101 (302)
T 1pja_A 34 ASYKPVIVVHGLFDSS--YSFRHLLEYINETHPGTVVTVLDLFDGRESLRPL---------WEQVQGFREAVVPIMAKA- 101 (302)
T ss_dssp -CCCCEEEECCTTCCG--GGGHHHHHHHHHHSTTCCEEECCSSCSGGGGSCH---------HHHHHHHHHHHHHHHHHC-
T ss_pred CCCCeEEEECCCCCCh--hHHHHHHHHHHhcCCCcEEEEeccCCCccchhhH---------HHHHHHHHHHHHHHhhcC-
Confidence 4568899999965543 3467777888888 9999999999987543211 135677777777776654
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCCC-ceeEEEEcCCcc
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAVPFV 630 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~~~~ 630 (758)
.+++.++|+|+||.++..++.++|+ +++++|+.++..
T Consensus 102 --~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~ 139 (302)
T 1pja_A 102 --PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQ 139 (302)
T ss_dssp --TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCT
T ss_pred --CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCc
Confidence 4789999999999999999999999 799999887754
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-12 Score=122.54 Aligned_cols=168 Identities=14% Similarity=0.039 Sum_probs=113.5
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCc---EEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGF---IFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 592 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~---~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 592 (758)
.|+||++||..+.. ..|......|.++|| .|+.+|+||.|.... ..++++.+.++.++++ .
T Consensus 3 ~~~vv~~HG~~~~~--~~~~~~~~~l~~~G~~~~~v~~~d~~g~g~s~~------------~~~~~~~~~~~~~~~~--~ 66 (181)
T 1isp_A 3 HNPVVMVHGIGGAS--FNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNY------------NNGPVLSRFVQKVLDE--T 66 (181)
T ss_dssp CCCEEEECCTTCCG--GGGHHHHHHHHHTTCCGGGEEECCCSCTTCCHH------------HHHHHHHHHHHHHHHH--H
T ss_pred CCeEEEECCcCCCH--hHHHHHHHHHHHcCCCCccEEEEecCCCCCchh------------hhHHHHHHHHHHHHHH--c
Confidence 47899999965543 346666778889998 599999999886532 2345666666555543 2
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhC--CCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCccc
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVD 670 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~ 670 (758)
+.+++.++|+|+||.++..++.++ |++++++|+.+|........ .++ + ..+
T Consensus 67 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~~---~~~---------~-------------~~~-- 119 (181)
T 1isp_A 67 GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGK---ALP---------G-------------TDP-- 119 (181)
T ss_dssp CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSB---CCC---------C-------------SCT--
T ss_pred CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCcccccccc---cCC---------C-------------CCC--
Confidence 457899999999999999999987 89999999999876532210 000 0 011
Q ss_pred ccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 671 NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 671 ~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
..+.| +|+++|++|..||+..+. -...+.++++ ++||.......+.. ..+.+||.+
T Consensus 120 ---~~~~p-~l~i~G~~D~~v~~~~~~---------~~~~~~~~~~---~~gH~~~~~~~~~~---~~i~~fl~~ 175 (181)
T 1isp_A 120 ---NQKIL-YTSIYSSADMIVMNYLSR---------LDGARNVQIH---GVGHIGLLYSSQVN---SLIKEGLNG 175 (181)
T ss_dssp ---TCCCE-EEEEEETTCSSSCHHHHC---------CBTSEEEEES---SCCTGGGGGCHHHH---HHHHHHHTT
T ss_pred ---ccCCc-EEEEecCCCccccccccc---------CCCCcceeec---cCchHhhccCHHHH---HHHHHHHhc
Confidence 11355 999999999999976431 2234566665 89998643333322 234677754
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-12 Score=134.74 Aligned_cols=227 Identities=15% Similarity=0.079 Sum_probs=137.7
Q ss_pred eeEEEEeeCC-CCeEEEEEEEeecccccc-CCCCCEEEEecCCCccCCCCCCChHHHHHHH------cCcEEEEEecCCC
Q 004368 485 FTERKWASAS-DGTQIPICIVYRKNLVKL-DGSDPLLLYGYGSYEICNDPAFNSSRLSLLD------RGFIFAIAQIRGG 556 (758)
Q Consensus 485 ~~~~~~~~s~-dG~~i~~~l~~p~~~~~~-~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~------~G~~v~~~~~RG~ 556 (758)
..+.+++.|. -|.+..++|+.|+++ .+ ++++|+|++.||..... ........+.. .+++|+.++..
T Consensus 11 ~v~~~~~~S~~l~~~r~~~VylP~~y-~~~~~~yPVlylldG~~~f~---~~~~~~~~l~~~~~~~~~~~IvV~i~~~-- 84 (331)
T 3gff_A 11 EYQSKRLESRLLKETREYVIALPEGY-AQSLEAYPVVYLLDGEDQFD---HMASLLQFLSQGTMPQIPKVIIVGIHNT-- 84 (331)
T ss_dssp CEEEEEEEETTTTEEEEEEEECCTTG-GGSCCCEEEEEESSHHHHHH---HHHHHHHHHTCSSSCSSCCCEEEEECCS--
T ss_pred eEEEEEEEecCCCCeEEEEEEeCCCC-CCCCCCccEEEEecChhhhH---HHHHHHHHHHhhhhcCCCCEEEEEECCC--
Confidence 3456666665 478899999999997 54 67899999999942110 00111223332 25788887651
Q ss_pred CCCchhHHh-------ccc-------ccCCcChHhHHH--HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCce
Q 004368 557 GELGRQWYE-------NGK-------FLKKKNTFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLF 620 (758)
Q Consensus 557 g~~G~~~~~-------~~~-------~~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f 620 (758)
....++.. .|. ...+...+.+++ ..+.++.++..+++.| +|+|+|+||++++.++.++|++|
T Consensus 85 -~R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p~~F 162 (331)
T 3gff_A 85 -NRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDRPLF 162 (331)
T ss_dssp -SHHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTCSSC
T ss_pred -CcccccCCCccccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCchhh
Confidence 11111100 000 011223445554 3566777776677665 89999999999999999999999
Q ss_pred eEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCC-------CCCC
Q 004368 621 KAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDP-------RVMY 693 (758)
Q Consensus 621 ~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~-------~V~~ 693 (758)
+++++.+|.+.+-. . ...+.+... .........| +++.||+.|. +++.
T Consensus 163 ~~~~~~S~~~w~~~-------------------~---~~~~~~~~~--~~~~~~~~~~-l~l~~G~~d~~~~~~~~~~~~ 217 (331)
T 3gff_A 163 SAYLALDTSLWFDS-------------------P---HYLTLLEER--VVKGDFKQKQ-LFMAIANNPLSPGFGVSSYHK 217 (331)
T ss_dssp SEEEEESCCTTTTT-------------------T---HHHHHHHHH--HHHCCCSSEE-EEEEECCCSEETTTEECCHHH
T ss_pred heeeEeCchhcCCh-------------------H---HHHHHHHHH--hhcccCCCCe-EEEEeCCCCCCCccchHHHHH
Confidence 99999999643211 0 111111110 0001112344 9999999998 6788
Q ss_pred hHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 694 SEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 694 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
.++++++++|++.+...-.+.|...++++|+... .....+.+.||......
T Consensus 218 ~~~~~l~~~Lk~~~~~g~~~~~~~~pg~~H~sv~-----~~~~~~~l~~lf~~~~~ 268 (331)
T 3gff_A 218 DLNLAFADKLTKLAPKGLGFMAKYYPEETHQSVS-----HIGLYDGIRHLFKDFAI 268 (331)
T ss_dssp HHHHHHHHHHHHHCCTTEEEEEEECTTCCTTTHH-----HHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhccCCCceEEEEECCCCCccccH-----HHHHHHHHHHHHhhcCC
Confidence 8899999999987432222344555599996421 22344456777766554
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.35 E-value=7e-11 Score=139.64 Aligned_cols=253 Identities=15% Similarity=0.070 Sum_probs=159.2
Q ss_pred ECCCCCEEEEEEeCCCCeEEEEEEEECC---CCceeec------cccC--cceeEEEecCC-eEEEEEeCCCCCCceEEE
Q 004368 198 VSPDNKLVAYAEDTKGDEIYTVYVIDIE---TGTPVGK------PLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (758)
Q Consensus 198 ~SPDG~~lAy~~~~~G~e~~~l~v~dl~---~g~~~~~------~~~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~~ 265 (758)
++|||++++|.....|.+...||+++.. +++...+ ...+ ...+++||||| .|+|...+.+.+..+|++
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 3599999999999888777899999987 6654432 1111 35668999999 899998766555578999
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCc-----------ceEEEEEeCCCCC-ceEEeecccc---
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI-----------TRFVFYLDVSKPE-ELRVLTPRVV--- 330 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~-----------~~~l~~~d~~~~~-~~~~l~~~~~--- 330 (758)
.++.++.. .... .... ...+++|||| +.|++.+.... ..+||++++.++. .-+.+.....
T Consensus 194 ~dl~tg~~--~~~~-~~~~-~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~ 268 (741)
T 1yr2_A 194 VGVADGKP--LADE-LKWV-KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK 268 (741)
T ss_dssp EETTTCCE--EEEE-EEEE-ESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred EECCCCCC--CCcc-CCCc-eeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence 99988742 2211 1111 1135789999 99999876543 4579999998765 2234443322
Q ss_pred -ceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCC-c-ceeeecCCCCceeeeEEEeCCEEEEEEEeCC-eeEEEEEE
Q 004368 331 -GVDTAASHRGNHFFITRRSDELFNSELLACPVDNTS-E-TTVLIPHRESVKLQDIQLFIDHLAVYEREGG-LQKITTYR 406 (758)
Q Consensus 331 -~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~l~v~~ 406 (758)
.....|||||++|++.++.....+..|+.+|++++. . ...+...... ....++.+++.+++..+.++ ..+|++++
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~~~~~~dg~~l~~~s~~~~~~~~l~~~d 347 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA-QWDFVDGVGDQLWFVSGDGAPLKKIVRVD 347 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc-eEEEEeccCCEEEEEECCCCCCCEEEEEe
Confidence 123459999999999887642245789999987631 2 3345544332 23345678899988877554 55688888
Q ss_pred cCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 407 LPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 407 l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
++...... +.+ ++.....+.++ ++.++.+++++..-. -..++.+++.++.
T Consensus 348 ~~~~~~~~------~~l-~~~~~~~l~~~--~~~~~~lv~~~~~dg-~~~l~~~~~~g~~ 397 (741)
T 1yr2_A 348 LSGSTPRF------DTV-VPESKDNLESV--GIAGNRLFASYIHDA-KSQVLAFDLDGKP 397 (741)
T ss_dssp CSSSSCEE------EEE-ECCCSSEEEEE--EEEBTEEEEEEEETT-EEEEEEEETTSCE
T ss_pred CCCCcccc------EEE-ecCCCCeEEEE--EEECCEEEEEEEECC-EEEEEEEeCCCCc
Confidence 76310111 112 22222223222 334667766665433 3578888875543
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-12 Score=130.63 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=73.4
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++||..+.. ..|......|.++||.|+.+|+||+|.+... ...+++++.+.+..+++.-..+..
T Consensus 16 ~~~vvllHG~~~~~--~~w~~~~~~L~~~~~~vi~~Dl~GhG~S~~~---------~~~~~~~~a~~l~~~l~~l~~~~~ 84 (264)
T 1r3d_A 16 TPLVVLVHGLLGSG--ADWQPVLSHLARTQCAALTLDLPGHGTNPER---------HCDNFAEAVEMIEQTVQAHVTSEV 84 (264)
T ss_dssp BCEEEEECCTTCCG--GGGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCTTS
T ss_pred CCcEEEEcCCCCCH--HHHHHHHHHhcccCceEEEecCCCCCCCCCC---------CccCHHHHHHHHHHHHHHhCcCCC
Confidence 48899999965543 3366666666658999999999999976531 112456666666655554333323
Q ss_pred cEEEEEeChhHHHHHH---HHhhCCCceeEEEEcCCc
Q 004368 596 KLCIEGRSAGGLLIGA---VLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~---~~~~~p~~f~a~v~~~~~ 629 (758)
++.++|||+||.++.. ++.++|++++++|+.++.
T Consensus 85 p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~ 121 (264)
T 1r3d_A 85 PVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGH 121 (264)
T ss_dssp EEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCC
T ss_pred ceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCC
Confidence 4999999999999999 778899999999987653
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.4e-12 Score=128.36 Aligned_cols=102 Identities=13% Similarity=0.025 Sum_probs=77.4
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|+||++||..+... .|...+..| .++|.|+.+|+||+|..... ....+++++.+.+..+++.- +.+
T Consensus 21 ~~~vv~lHG~~~~~~--~~~~~~~~L-~~~~~v~~~D~~G~G~S~~~--------~~~~~~~~~~~~~~~~l~~l--~~~ 87 (264)
T 3ibt_A 21 APTLFLLSGWCQDHR--LFKNLAPLL-ARDFHVICPDWRGHDAKQTD--------SGDFDSQTLAQDLLAFIDAK--GIR 87 (264)
T ss_dssp SCEEEEECCTTCCGG--GGTTHHHHH-TTTSEEEEECCTTCSTTCCC--------CSCCCHHHHHHHHHHHHHHT--TCC
T ss_pred CCeEEEEcCCCCcHh--HHHHHHHHH-HhcCcEEEEccccCCCCCCC--------ccccCHHHHHHHHHHHHHhc--CCC
Confidence 589999999765543 366666666 45699999999999876532 22345666666665555542 346
Q ss_pred cEEEEEeChhHHHHHHHHhhC-CCceeEEEEcCCcc
Q 004368 596 KLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPFV 630 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~~~ 630 (758)
++.++|+|+||.+++.++.++ |++++++|+.+|..
T Consensus 88 ~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~ 123 (264)
T 3ibt_A 88 DFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLL 123 (264)
T ss_dssp SEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCS
T ss_pred ceEEEecchhHHHHHHHHHhhChhhhheEEEecCCC
Confidence 899999999999999999999 99999999998754
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=133.47 Aligned_cols=109 Identities=11% Similarity=0.034 Sum_probs=72.2
Q ss_pred CCCEEEEecCCCccCCC---CCCCh-HHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcC
Q 004368 515 SDPLLLYGYGSYEICND---PAFNS-SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 590 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~---~~~~~-~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 590 (758)
..|+||++||..+.... ..|.. ....| .++|.|+.+|+||.|........ .....+++++.+.+..+++.
T Consensus 34 ~~p~vvllHG~~~~~~~~~~~~~~~~~~~~L-~~~~~vi~~D~~G~G~s~~~~~~----~~~~~~~~~~~~~l~~~l~~- 107 (286)
T 2qmq_A 34 KRPAIFTYHDVGLNYKSCFQPLFRFGDMQEI-IQNFVRVHVDAPGMEEGAPVFPL----GYQYPSLDQLADMIPCILQY- 107 (286)
T ss_dssp TCCEEEEECCTTCCHHHHHHHHHTSHHHHHH-HTTSCEEEEECTTTSTTCCCCCT----TCCCCCHHHHHHTHHHHHHH-
T ss_pred CCCeEEEeCCCCCCchhhhhhhhhhchhHHH-hcCCCEEEecCCCCCCCCCCCCC----CCCccCHHHHHHHHHHHHHH-
Confidence 46899999996554321 01221 33344 45799999999998754221100 00002455555555444433
Q ss_pred CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc
Q 004368 591 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 591 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
.+.+++.++|+|+||.+++.++.++|++++++|+.+|..
T Consensus 108 -l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 146 (286)
T 2qmq_A 108 -LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDP 146 (286)
T ss_dssp -HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred -hCCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCC
Confidence 133689999999999999999999999999999998854
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-10 Score=119.92 Aligned_cols=229 Identities=14% Similarity=0.072 Sum_probs=144.7
Q ss_pred eEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC-CCCCcEEEeeecCCceeeEEE
Q 004368 215 EIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA-DQSNDICLYHEKDDIYSLGLQ 291 (758)
Q Consensus 215 e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~-~~~~~~~v~~~~~~~~~~~~~ 291 (758)
...+|+++|+.+++.... ...+....++|+||| .+++.. + ..|+++++.+ + +...+...........+.
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~-----~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-E-----GLLYRLSLAGDP--SPEKVDTGFATICNNDHG 91 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-T-----TEEEEEESSSCC--SCEECCCTTCCCBCSCCE
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-C-----CeEEEEeCCCCC--CceEeccccccccccceE
Confidence 357899999999987654 233446679999999 666653 2 2699999987 5 234444332223334578
Q ss_pred EcCCCcEEEEEecCC-cceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCccee
Q 004368 292 ASESKKFLFIASESK-ITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV 370 (758)
Q Consensus 292 ~S~Dg~~l~~~s~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~ 370 (758)
|+|||++|++..... ....||.+++.++. .+.+..........|+|||+.|++....++ ..+|+.+++.+. ....
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~l~~~~~~~~-~~~~ 167 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQ--VFDIYSMDIDSG-VETR 167 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETT--EEEEEEEETTTC-CEEE
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCC--ceEEEEEECCCC-cceE
Confidence 999999999877443 46789999998776 666655433233459999999998776552 468898887652 2233
Q ss_pred eecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEE
Q 004368 371 LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHY 448 (758)
Q Consensus 371 l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~ 448 (758)
+..... .+..+.+. ++.+++....++..+++.+++. ++.+..+ ......+..+.++++++.+++..
T Consensus 168 ~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~--~~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 168 LTHGEG--RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD--GSSVERI--------TDSAYGDWFPHPSPSGDKVVFVS 235 (297)
T ss_dssp CCCSSS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETT--SSCEEEC--------CCCSEEEEEEEECTTSSEEEEEE
T ss_pred cccCCC--ccccceECCCCCEEEEEecCCCCccEEEECCC--CCCcEEE--------ecCCcccCCeEECCCCCEEEEEE
Confidence 333322 34455554 4567666655666666655544 4432222 11112233345677888877766
Q ss_pred ecCC-------CCCEEEEEECCCCcE
Q 004368 449 SSLR-------TPPSVYDYDMDMGIS 467 (758)
Q Consensus 449 sS~~-------~P~~i~~~d~~~~~~ 467 (758)
.... ....++.+|+.+++.
T Consensus 236 ~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp EETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred cCCCCCcccccCceEEEEEecCCCCc
Confidence 5432 235799999988774
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-12 Score=130.34 Aligned_cols=201 Identities=15% Similarity=0.108 Sum_probs=115.8
Q ss_pred CC-EEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 516 DP-LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 516 ~P-~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
.| .||++||..+.. ..|......| ..+|.|+.+|+||+|.+... ...+++++ ++.+.+. ++
T Consensus 12 g~~~vvllHG~~~~~--~~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~---------~~~~~~~~---~~~l~~~--l~- 73 (258)
T 1m33_A 12 GNVHLVLLHGWGLNA--EVWRCIDEEL-SSHFTLHLVDLPGFGRSRGF---------GALSLADM---AEAVLQQ--AP- 73 (258)
T ss_dssp CSSEEEEECCTTCCG--GGGGGTHHHH-HTTSEEEEECCTTSTTCCSC---------CCCCHHHH---HHHHHTT--SC-
T ss_pred CCCeEEEECCCCCCh--HHHHHHHHHh-hcCcEEEEeeCCCCCCCCCC---------CCcCHHHH---HHHHHHH--hC-
Confidence 46 899999965433 3355555555 46899999999999876532 12344443 3444433 34
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCC-Ch---------------hhhh---ccCCCC
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPL-TT---------------AEWE---EWGDPW 655 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~-~~---------------~~~~---e~g~p~ 655 (758)
+++.++|+|+||.++..++.++|++++++|+..+.........-..... .. ..+. ..+.+.
T Consensus 74 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 1m33_A 74 DKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTET 153 (258)
T ss_dssp SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTT
T ss_pred CCeEEEEECHHHHHHHHHHHHhhHhhceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcc
Confidence 7999999999999999999999999999998765321110000000000 00 0000 001111
Q ss_pred ------------------CHHH----HHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceE
Q 004368 656 ------------------KEEF----YFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 713 (758)
Q Consensus 656 ------------------~~~~----~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 713 (758)
.... +..+...+....+.++++| +|+++|.+|..+++..++++.+.+ ...+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~ 228 (258)
T 1m33_A 154 ARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMP-FLRLYGYLDGLVPRKVVPMLDKLW----PHSESY 228 (258)
T ss_dssp HHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSC-EEEEEETTCSSSCGGGCC-CTTTC----TTCEEE
T ss_pred chhhHHHHHHHHHhccCCcHHHHHHHHHHHHhCCHHHHHhhCCCC-EEEEeecCCCCCCHHHHHHHHHhC----ccceEE
Confidence 1110 1111222233345567888 999999999999987666554432 234566
Q ss_pred EEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 714 LFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 714 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
+++ ++||.......+.+.+ .+.+||.
T Consensus 229 ~i~---~~gH~~~~e~p~~~~~--~i~~fl~ 254 (258)
T 1m33_A 229 IFA---KAAHAPFISHPAEFCH--LLVALKQ 254 (258)
T ss_dssp EET---TCCSCHHHHSHHHHHH--HHHHHHT
T ss_pred EeC---CCCCCccccCHHHHHH--HHHHHHH
Confidence 665 8999753333333332 2456664
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-11 Score=125.76 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=81.6
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 573 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~ 573 (758)
.+|.++..... +..|.||++||..+.. ..|...+..|+++ |.|+.+|.||+|.+... . ......
T Consensus 16 ~~g~~l~y~~~---------G~g~~lvllHG~~~~~--~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~-~---~~~~~~ 79 (294)
T 1ehy_A 16 LPDVKIHYVRE---------GAGPTLLLLHGWPGFW--WEWSKVIGPLAEH-YDVIVPDLRGFGDSEKP-D---LNDLSK 79 (294)
T ss_dssp CSSCEEEEEEE---------ECSSEEEEECCSSCCG--GGGHHHHHHHHTT-SEEEEECCTTSTTSCCC-C---TTCGGG
T ss_pred ECCEEEEEEEc---------CCCCEEEEECCCCcch--hhHHHHHHHHhhc-CEEEecCCCCCCCCCCC-c---cccccC
Confidence 47777754321 2347899999976543 3465666666655 99999999999976532 0 000002
Q ss_pred ChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 574 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 574 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
.+++++.+.+..++++- ..+++.++|+|+||.++..++.++|++++++|+..+
T Consensus 80 ~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 132 (294)
T 1ehy_A 80 YSLDKAADDQAALLDAL--GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDP 132 (294)
T ss_dssp GCHHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECC
T ss_pred cCHHHHHHHHHHHHHHc--CCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecC
Confidence 34566666665555542 236899999999999999999999999999998875
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-10 Score=137.24 Aligned_cols=255 Identities=11% Similarity=-0.000 Sum_probs=155.2
Q ss_pred EECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc-----C---cceeEEEecCC-eEEEEEeCCCCCCceEEEEE
Q 004368 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV-----G---VTASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~-----~---~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~ 267 (758)
.++|||++++|.....|.+...||+++..+|+...+... + ...+++||||| .|+|+....+.+...|++.+
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence 345999999999998887778999999888765543211 1 25678999999 89999877666667899999
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCc----------ceEEEEEeCCCCC-ceEEeecccc----ce
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI----------TRFVFYLDVSKPE-ELRVLTPRVV----GV 332 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~----------~~~l~~~d~~~~~-~~~~l~~~~~----~~ 332 (758)
+.++......... ... ..+++|||||+.|++.+.+.. ..+||++++.++. ..+.+..... ..
T Consensus 154 l~tg~~~~~~~~~--~~~-~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~ 230 (695)
T 2bkl_A 154 VDSGEWSKVDVIE--GGK-YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL 230 (695)
T ss_dssp TTTCCBCSSCCBS--CCT-TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred CCCCCCcCCcccC--ccc-ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence 9887421000111 111 136789999999999886543 4679999998875 2234443321 12
Q ss_pred eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeC-CeeEEEEEEcCCCC
Q 004368 333 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREG-GLQKITTYRLPAVG 411 (758)
Q Consensus 333 ~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~l~v~~l~~~g 411 (758)
...|||||++|++.++.. ....+|+.++..+ +....+....... ...+..+++ +++....+ +...|++++++. +
T Consensus 231 ~~~~SpDG~~l~~~~~~~-~~~~~l~~~~~~~-~~~~~l~~~~~~~-~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~-~ 305 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRG-WSENDVYWKRPGE-KDFRLLVKGVGAK-YEVHAWKDR-FYVLTDEGAPRQRVFEVDPAK-P 305 (695)
T ss_dssp EEEECTTSCCEEEEEEET-TTEEEEEEECTTC-SSCEEEEECSSCC-EEEEEETTE-EEEEECTTCTTCEEEEEBTTB-C
T ss_pred EEEECCCCCEEEEEEeCC-CCceEEEEEcCCC-CceEEeecCCCce-EEEEecCCc-EEEEECCCCCCCEEEEEeCCC-C
Confidence 345999999999988764 2457888887644 2334455443322 222334455 65554433 345677777653 2
Q ss_pred CccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 412 EPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 412 ~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
+ ...+ +.+....+...+.++.+ .++.+++++..- .-..++.+++.++.
T Consensus 306 ~-~~~~---~~l~~~~~~~~l~~~~~--~~~~lv~~~~~d-g~~~l~~~~~~g~~ 353 (695)
T 2bkl_A 306 A-RASW---KEIVPEDSSASLLSVSI--VGGHLSLEYLKD-ATSEVRVATLKGKP 353 (695)
T ss_dssp S-GGGC---EEEECCCSSCEEEEEEE--ETTEEEEEEEET-TEEEEEEEETTCCE
T ss_pred C-ccCC---eEEecCCCCCeEEEEEE--ECCEEEEEEEEC-CEEEEEEEeCCCCe
Confidence 2 1000 12211111112322222 355676666543 33578888876543
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-12 Score=135.32 Aligned_cols=151 Identities=12% Similarity=0.044 Sum_probs=96.0
Q ss_pred cCCCCCCcEEEEEeChhHHHHHHHHhhCCCcee-EEEEcCCccchhhccCCCCCCCChhhhhc-cCCCCCHHHH-HHHHh
Q 004368 589 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK-AAVAAVPFVDVLTTMLDPTIPLTTAEWEE-WGDPWKEEFY-FYMKS 665 (758)
Q Consensus 589 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~-a~v~~~~~~d~~~~~~~~~~~~~~~~~~e-~g~p~~~~~~-~~l~~ 665 (758)
+..+|++||+|+|+|+||+|++.++..+|++|+ ++++.++....... ... ....+.. ++.+..++.. +.++.
T Consensus 5 ~~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (318)
T 2d81_A 5 AFNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCAR----NQY-YTSCMYNGYPSITTPTANMKSWSG 79 (318)
T ss_dssp CCCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTS----SSC-GGGGSTTCCCCCHHHHHHHHHHBT
T ss_pred hcCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccc----hHH-HHHHhhccCCCCCCHHHHHHHhhc
Confidence 345899999999999999999999999999999 87666553211100 000 0000000 1111111211 22222
Q ss_pred cCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCC--CCceEEEEecCCCCCCCCCChH-------------
Q 004368 666 YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKT--DDNILLFKCELGAGHFSKSGRF------------- 730 (758)
Q Consensus 666 ~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~gH~~~~~~~------------- 730 (758)
+++..+.+++.||+||+||++|++||+.++++++++|++.+. +++++.++ ++||+......
T Consensus 80 -~~i~~~~~l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~g~~~~ve~~~~~---g~gH~~~~~~~~~~~~~c~~~~~p 155 (318)
T 2d81_A 80 -NQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTT---GAVHTFPTDFNGAGDNSCSLSTSP 155 (318)
T ss_dssp -TTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEET---TCCSSEEESSCCTTCCCTTSCCTT
T ss_pred -ccCChhHcCCCCcEEEEeCCCCCCcCHHHHHHHHHHHHhcCCCcceEEEEeC---CCCCCCccCCcccCccccccCCCC
Confidence 455555555556799999999999999999999999998873 34555554 89997532211
Q ss_pred ----HHHHHHHHHHHHHHHhcC
Q 004368 731 ----ERLREAAFTYTFLMRALS 748 (758)
Q Consensus 731 ----~~~~~~~~~~~fl~~~l~ 748 (758)
..++....+++||...+.
T Consensus 156 yi~~~~~d~~~~i~~ff~g~~~ 177 (318)
T 2d81_A 156 YISNCNYDGAGAALKWIYGSLN 177 (318)
T ss_dssp CEEECSSCHHHHHHHHHHSSCC
T ss_pred cccCCCChHHHHHHHHHhccCC
Confidence 024555567899987664
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-13 Score=141.15 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=75.3
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
+.|+||++||..+... .|...+..|. +||.|+.+|+||.|.....-.. ......+++++.+.+..+++. .+.
T Consensus 24 ~~p~vv~lHG~~~~~~--~~~~~~~~l~-~g~~v~~~D~~G~G~s~~~~~~---~~~~~~~~~~~~~~l~~~l~~--l~~ 95 (304)
T 3b12_A 24 SGPALLLLHGFPQNLH--MWARVAPLLA-NEYTVVCADLRGYGGSSKPVGA---PDHANYSFRAMASDQRELMRT--LGF 95 (304)
Confidence 4588999999755433 3555556666 8999999999999876542100 001122334444444333332 234
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccc
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 631 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 631 (758)
+++.++|+|+||.++..++.++|++++++|+.+|...
T Consensus 96 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 132 (304)
T 3b12_A 96 ERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPT 132 (304)
Confidence 6899999999999999999999999999999887654
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-12 Score=133.54 Aligned_cols=103 Identities=11% Similarity=0.107 Sum_probs=74.9
Q ss_pred CCEEEEecC-CCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 516 DPLLLYGYG-SYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 516 ~P~vl~~hG-g~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
.|+||++|| |... ....|......|. +||.|+.+|+||+|.... ......+++|+.+.+..+++.- ..
T Consensus 41 ~p~vv~lHG~G~~~-~~~~~~~~~~~L~-~~~~vi~~D~~G~G~S~~-------~~~~~~~~~~~~~~l~~~l~~~--~~ 109 (292)
T 3l80_A 41 NPCFVFLSGAGFFS-TADNFANIIDKLP-DSIGILTIDAPNSGYSPV-------SNQANVGLRDWVNAILMIFEHF--KF 109 (292)
T ss_dssp SSEEEEECCSSSCC-HHHHTHHHHTTSC-TTSEEEEECCTTSTTSCC-------CCCTTCCHHHHHHHHHHHHHHS--CC
T ss_pred CCEEEEEcCCCCCc-HHHHHHHHHHHHh-hcCeEEEEcCCCCCCCCC-------CCcccccHHHHHHHHHHHHHHh--CC
Confidence 489999997 2221 1122444443443 799999999999987641 1222356777777777766653 33
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
+++.++|+|+||.++..++.++|++++++|+..|.
T Consensus 110 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 144 (292)
T 3l80_A 110 QSYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPT 144 (292)
T ss_dssp SEEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCC
T ss_pred CCeEEEEEchhHHHHHHHHHhCchheeeEEEECCC
Confidence 69999999999999999999999999999998853
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-09 Score=115.12 Aligned_cols=240 Identities=11% Similarity=0.041 Sum_probs=149.3
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+..+.|||||++|+++...+| .|+++|+.+++.+.. ........++|+||| .+++...++ ..|+++++.+
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~----~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~----~~v~v~d~~~ 105 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSN----DVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMAS----STLSVIDTTS 105 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGT----EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT----TEEEEEETTT
T ss_pred cceEEECCCCCEEEEECCCCC----eEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCC----CEEEEEECCC
Confidence 567899999999977765444 799999999987653 333345679999999 566654332 3588889887
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce-eeEEeecCCEEEEEEcC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~ 349 (758)
+ +....+... ....++.|+|||++|++.... ...|+++|+.+++ ........... ...|+|+|+.+++....
T Consensus 106 ~--~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 106 N--TVAGTVKTG--KSPLGLALSPDGKKLYVTNNG--DKTVSVINTVTKA-VINTVSVGRSPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp T--EEEEEEECS--SSEEEEEECTTSSEEEEEETT--TTEEEEEETTTTE-EEEEEECCSSEEEEEECTTSSEEEEEETT
T ss_pred C--eEEEEEeCC--CCcceEEECCCCCEEEEEeCC--CCEEEEEECCCCc-EEEEEecCCCcceEEECCCCCEEEEEeCC
Confidence 6 223333322 223468899999998776543 3478999998776 33322222222 33489999988776554
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccC
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID 427 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~ 427 (758)
+ ..|+.+|+.+. .....+.... .+..+.+. ++.+++.........+.+|++.. ++.+ ..+. .
T Consensus 179 ~----~~v~~~d~~~~-~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~-~~~~------~~~~--~ 242 (391)
T 1l0q_A 179 S----MSISVIDTVTN-SVIDTVKVEA--APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-NKIT------ARIP--V 242 (391)
T ss_dssp T----TEEEEEETTTT-EEEEEEECSS--EEEEEEECTTSSEEEEEEECSSCCEEEEEETTT-TEEE------EEEE--C
T ss_pred C----CEEEEEECCCC-eEEEEEecCC--CccceEECCCCCEEEEEecCcCCCcEEEEECCC-CeEE------EEEe--c
Confidence 3 57888998763 2223343332 34455554 45666655422445688998873 3221 1121 1
Q ss_pred cccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 428 PVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 428 ~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
.. .+..+.++++++.++++.+. -..+..+|+.+++.
T Consensus 243 ~~-~~~~~~~s~dg~~l~~s~~~---d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 243 GP-DPAGIAVTPDGKKVYVALSF---XNTVSVIDTATNTI 278 (391)
T ss_dssp CS-SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEE
T ss_pred CC-CccEEEEccCCCEEEEEcCC---CCEEEEEECCCCcE
Confidence 11 12234556778777665432 36899999988873
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-10 Score=140.06 Aligned_cols=257 Identities=10% Similarity=-0.006 Sum_probs=154.2
Q ss_pred EeeEEEC-CCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc-cC-cceeEEEecCC-eEEEEEeCCCCCCceEE-EEE
Q 004368 193 VGCFQVS-PDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VG-VTASVEWAGNE-ALVYITMDEILRPDKAW-LHK 267 (758)
Q Consensus 193 i~~~~~S-PDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~-~~~~~~wspDg-~l~y~~~~~~~~~~~v~-~~~ 267 (758)
+..+.|| |||++|||..+ .+|+++++.+++...... .+ ....++|+ || .|+|.+. ...+| +++
T Consensus 298 v~~~~~S~pdG~~la~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-----~~~l~~~~d 365 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVSR------GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-----EGDFLGIYD 365 (1045)
T ss_dssp GGEEEEEECGGGCEEEEET------TEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-----TEEEEEEEE
T ss_pred cceeeecCCCCCEEEEEEc------CEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-----CCceEEEEE
Confidence 5678999 99999999882 369999999988765422 23 35668999 99 7877764 24688 888
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccc-eeeEEeecCCEEEE
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFI 345 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~ 345 (758)
+.++. ...+. ........+.|||||++|++.+.+ ..|+++|+++++ .+.+.. .... ....|||||++|++
T Consensus 366 ~~~~~--~~~l~--~~~~~~~~~~~SpDG~~la~~~~~---~~v~~~d~~tg~-~~~~~~~~~~~v~~~~~SpDG~~la~ 437 (1045)
T 1k32_A 366 YRTGK--AEKFE--ENLGNVFAMGVDRNGKFAVVANDR---FEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAY 437 (1045)
T ss_dssp TTTCC--EEECC--CCCCSEEEEEECTTSSEEEEEETT---SEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred CCCCC--ceEec--CCccceeeeEECCCCCEEEEECCC---CeEEEEECCCCc-eEEeccCCCCCccceEECCCCCeEEE
Confidence 87652 22232 222334578899999999987654 479999999887 655553 2222 23459999999988
Q ss_pred EEcCC-----CCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCee---------------EEEEE
Q 004368 346 TRRSD-----ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQ---------------KITTY 405 (758)
Q Consensus 346 ~s~~~-----~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---------------~l~v~ 405 (758)
.+... +.....|+++|+++. ....+..+........|+++++.|++...+++.. .++++
T Consensus 438 ~~~~~~~~~~~~~~~~i~l~d~~~g-~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1045)
T 1k32_A 438 GFPLKHGETDGYVMQAIHVYDMEGR-KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI 516 (1045)
T ss_dssp EEEECSSTTCSCCEEEEEEEETTTT-EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEE
T ss_pred EecCccccccCCCCCeEEEEECCCC-cEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEE
Confidence 87642 123468999998763 3233444433222233455566777665433311 22333
Q ss_pred EcCCCCCcc--------------ccccC--CceeeccCcccccCCCCcccCCcEEEE---------EEecCCCCCEEEEE
Q 004368 406 RLPAVGEPL--------------KSLQG--GKSVEFIDPVYSIDPSESVFSSRILRF---------HYSSLRTPPSVYDY 460 (758)
Q Consensus 406 ~l~~~g~~~--------------~~l~~--~~~i~~p~~~~~i~~~~~~~d~~~l~~---------~~sS~~~P~~i~~~ 460 (758)
.+..++..+ ..+.. .+...++.+...+..+..++|+..++. .+++...+..+|.|
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 596 (1045)
T 1k32_A 517 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 596 (1045)
T ss_dssp ESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEE
T ss_pred EeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEE
Confidence 333211111 00000 011223322222333445666644433 23567778999999
Q ss_pred ECCCCcEEEE
Q 004368 461 DMDMGISVLK 470 (758)
Q Consensus 461 d~~~~~~~~~ 470 (758)
|+.+++...+
T Consensus 597 d~~~~~~~~l 606 (1045)
T 1k32_A 597 DVKTRKVTEV 606 (1045)
T ss_dssp ETTTCCEEEE
T ss_pred ECCCCcEEEe
Confidence 9999885433
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4e-11 Score=126.37 Aligned_cols=116 Identities=13% Similarity=0.045 Sum_probs=81.5
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 573 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~ 573 (758)
.+|.++.... .+ .++.|.||++||..+... .|...+..|.+ .|.|+.+|+||+|.+... ....
T Consensus 28 ~~g~~l~y~~---~G----~g~~~~vvllHG~~~~~~--~w~~~~~~L~~-~~~via~Dl~GhG~S~~~-------~~~~ 90 (318)
T 2psd_A 28 VLDSFINYYD---SE----KHAENAVIFLHGNATSSY--LWRHVVPHIEP-VARCIIPDLIGMGKSGKS-------GNGS 90 (318)
T ss_dssp ETTEEEEEEE---CC----SCTTSEEEEECCTTCCGG--GGTTTGGGTTT-TSEEEEECCTTSTTCCCC-------TTSC
T ss_pred eCCeEEEEEE---cC----CCCCCeEEEECCCCCcHH--HHHHHHHHhhh-cCeEEEEeCCCCCCCCCC-------CCCc
Confidence 4777665431 11 234578999999755433 35554555544 579999999999976432 1122
Q ss_pred ChHhHHHHHHHHHHHcCCCCC-CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 574 NTFTDFIACAEYLIKNCYCTK-EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 574 ~~~~D~~~~~~~l~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
.+++++.+.+..+++. .+. +++.++|+|+||.+++.++.++|++++++|+..+
T Consensus 91 ~~~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~ 144 (318)
T 2psd_A 91 YRLLDHYKYLTAWFEL--LNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMES 144 (318)
T ss_dssp CSHHHHHHHHHHHHTT--SCCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHh--cCCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEecc
Confidence 4567777777776665 234 7899999999999999999999999999998643
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-09 Score=112.03 Aligned_cols=181 Identities=13% Similarity=0.097 Sum_probs=125.1
Q ss_pred EECCCCCEEEEEE-eCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCC
Q 004368 197 QVSPDNKLVAYAE-DTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSN 274 (758)
Q Consensus 197 ~~SPDG~~lAy~~-~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~ 274 (758)
.|||+|++|+|+. +..+ ...|+.+++++.....++.... ..|+|+| .|||+.. ...+|++.++.+. .
T Consensus 110 ~~s~~g~~Iy~~~~~~~~--~~~Iy~~~~dGs~~~~lt~~~~---~~~~~~g~~iy~t~~----g~~~Iy~~~l~g~--~ 178 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQT--ATSLYRIRIDGEEKKKIKNHYL---FTCNTSDRYFYYNNP----KNGQLYRYDTASQ--S 178 (302)
T ss_dssp EEEEETTEEEEEEESSSS--CEEEEEEETTSCCCEEEESSCC---CCSEEETTEEEEECT----TTCCEEEEETTTT--E
T ss_pred EEEEeCCEEEEEeecCCC--CceEEEEECCCCCeEEEeCCCc---eEeeEECCEEEEEeC----CCceEEEEECCCC--C
Confidence 6789999999987 3334 4789999999876655433322 3467788 8988854 2236999998766 3
Q ss_pred cEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCCCC
Q 004368 275 DICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFN 354 (758)
Q Consensus 275 ~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~ 354 (758)
..+++.+ .. . . .++|+|++|+++..... .+|+++++++.. .++|+... ...++|+|++||+.+... .
T Consensus 179 ~~~l~~~--~~-~-~-~~~P~g~~iy~t~~~~~-~~I~~~~ldG~~-~~~Lt~~~---~~~~~~~g~~Iy~~~~~~---~ 245 (302)
T 3s25_A 179 EALFYDC--NC-Y-K-PVVLDDTNVYYMDVNRD-NAIVHVNINNPN-PVVLTEAN---IEHYNVYGSLIFYQRGGD---N 245 (302)
T ss_dssp EEEEECS--CE-E-E-EEEEETTEEEEEEGGGT-TEEEEECSSSCC-CEECSCSC---EEEEEEETTEEEEEECSS---S
T ss_pred EEEEeCC--Cc-c-c-eeeecCCEEEEEEcCCC-cEEEEEECCCCC-eEEEeCCC---cceEEECCCEEEEEECCC---C
Confidence 4455532 22 2 2 25599999999765433 789999999887 67776432 244899999999987654 3
Q ss_pred cEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 355 SELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 355 ~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
..|+++++++. ..+.+... .+..+.+++++++++....+. +..++++
T Consensus 246 ~~i~~~~~DG~-~r~~l~~~----~~~~i~i~~d~Iy~td~~~~~--i~~~~~d 292 (302)
T 3s25_A 246 PALCVVKNDGT-GFKELAKG----EFCNINVTSQYVYFTDFVSNK--EYCTSTQ 292 (302)
T ss_dssp CEEEEEETTSC-CCEEEEES----CEEEEEECSSEEEEEETTTCC--EEEEESS
T ss_pred cEEEEEECCCC-ccEEeeCC----ccceEEEeCCEEEEEECCCCe--EEEEECC
Confidence 78999999873 23334432 245788999999988755553 5555655
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.24 E-value=8.7e-12 Score=139.88 Aligned_cols=225 Identities=14% Similarity=0.091 Sum_probs=134.1
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCC-CCCCChHHHHHH-HcCcEEEEEecCCCC-CCchhHHhcccc
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN-DPAFNSSRLSLL-DRGFIFAIAQIRGGG-ELGRQWYENGKF 569 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~~~~~l~-~~G~~v~~~~~RG~g-~~G~~~~~~~~~ 569 (758)
+.|. +.+.++.|+.. ..+++.|+||++|||..... ...+........ .+|++|+.+|||.+. +|+..-... ..
T Consensus 82 ~edc--l~l~v~~P~~~-~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~-~~ 157 (522)
T 1ukc_A 82 SEDC--LFINVFKPSTA-TSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVR-QN 157 (522)
T ss_dssp ESCC--CEEEEEEETTC-CTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHH-HS
T ss_pred CCcC--CEEEEEECCCC-CCCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhcc-cc
Confidence 4565 44556677654 34567899999999854332 233544333332 469999999999432 222211100 00
Q ss_pred cCCcChHhHHHHHHHHHHHcC---CCCCCcEEEEEeChhHHHHHHHHhhC----CCceeEEEEcCCccchhhccCCCCCC
Q 004368 570 LKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMR----PDLFKAAVAAVPFVDVLTTMLDPTIP 642 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~~~~d~~~~~~~~~~~ 642 (758)
......+.|..+|++|+.++- ..||++|.|+|+|+||.+++.++... +.+|+++|+.+|..+..... ....
T Consensus 158 ~~~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~~~--~~~~ 235 (522)
T 1ukc_A 158 GDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTV--SEME 235 (522)
T ss_dssp SCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCS--GGGH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcCCH--HHHH
Confidence 123456899999999998762 46999999999999999888777653 57999999999975422110 0000
Q ss_pred CChhhh-hccCCCCCHHHHHHHHhcCcccccCC---------CCCC-eEEEeccCCCCCCCChHHHHHHHHHHhcCCCCc
Q 004368 643 LTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKA---------QNYP-HILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN 711 (758)
Q Consensus 643 ~~~~~~-~e~g~p~~~~~~~~l~~~sp~~~i~~---------~~~P-~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~ 711 (758)
.....+ ...|.....+..+.|++.++...+.. ...| +++..+...|..+.+.++.++.++-+..++
T Consensus 236 ~~~~~~~~~~gc~~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l~~~p~~~~~~g~~~~v--- 312 (522)
T 1ukc_A 236 FQFERFVNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFIKV--- 312 (522)
T ss_dssp HHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTCSCCC---
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCcccCCCHHHHHhcCCCCCC---
Confidence 000111 22343322334455665554221111 1111 045567788888888888888776554443
Q ss_pred eEEEEecCCCCCCCC
Q 004368 712 ILLFKCELGAGHFSK 726 (758)
Q Consensus 712 ~~~~~~~~~~gH~~~ 726 (758)
++++-...++||.+.
T Consensus 313 p~l~G~~~~Eg~~f~ 327 (522)
T 1ukc_A 313 PVLVGDDTDEGSNFA 327 (522)
T ss_dssp CEEEEEETBGGGGTS
T ss_pred CEEEEeecchhHHhh
Confidence 345555568888664
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.8e-09 Score=106.94 Aligned_cols=227 Identities=7% Similarity=0.109 Sum_probs=149.2
Q ss_pred CcEEeCcEEEEEEecCCCeeEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecccccCCCCeEEEeeEEECCCCCEE
Q 004368 126 APFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLV 205 (758)
Q Consensus 126 ~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~l 205 (758)
.-+..|+|+||+....+ ..+||.+..+. ..+.|-|-. .--++|||++|
T Consensus 20 ~~~~~g~~iy~~n~~d~---~~ly~~~~dg~-----------------~~~~l~~~~------------~~~i~~~g~~I 67 (302)
T 3s25_A 20 LFCESDGEVFFSNTNDN---GRLYAMNIDGS-----------------NIHKLSNDT------------AMYINADKNYV 67 (302)
T ss_dssp CEEEETTEEEEEEGGGT---TEEEEEETTSC-----------------SCEEEEEEE------------EEEEEECSSEE
T ss_pred EEEEeCCEEEEEeCCCC---ceEEEEcCCCC-----------------CCEEccCCc------------eeeEEEcCCEE
Confidence 34578999999876432 35777665321 233433321 12568999999
Q ss_pred EEEEeCCCC---------eEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCc
Q 004368 206 AYAEDTKGD---------EIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSND 275 (758)
Q Consensus 206 Ay~~~~~G~---------e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~ 275 (758)
.|+....+. ....|+.+++++++...+.-. ....|+++| +|||+.... .....+|+.++.+.. .
T Consensus 68 yy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~---~~~~~s~~g~~Iy~~~~~~-~~~~~Iy~~~~dGs~--~ 141 (302)
T 3s25_A 68 YYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD---PCIYASLIGNYIYYLHYDT-QTATSLYRIRIDGEE--K 141 (302)
T ss_dssp EEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS---CEEEEEEETTEEEEEEESS-SSCEEEEEEETTSCC--C
T ss_pred EEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC---CccEEEEeCCEEEEEeecC-CCCceEEEEECCCCC--e
Confidence 999876642 247899999999876553211 224789999 899986321 223569999997653 3
Q ss_pred EEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCCCCc
Q 004368 276 ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNS 355 (758)
Q Consensus 276 ~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~ 355 (758)
..+..... ..++++|++|++++. +...||+++++++. .++|.... ....+.|+|++||+....+ ++
T Consensus 142 ~~lt~~~~------~~~~~~g~~iy~t~~--g~~~Iy~~~l~g~~-~~~l~~~~--~~~~~~P~g~~iy~t~~~~---~~ 207 (302)
T 3s25_A 142 KKIKNHYL------FTCNTSDRYFYYNNP--KNGQLYRYDTASQS-EALFYDCN--CYKPVVLDDTNVYYMDVNR---DN 207 (302)
T ss_dssp EEEESSCC------CCSEEETTEEEEECT--TTCCEEEEETTTTE-EEEEECSC--EEEEEEEETTEEEEEEGGG---TT
T ss_pred EEEeCCCc------eEeeEECCEEEEEeC--CCceEEEEECCCCC-EEEEeCCC--ccceeeecCCEEEEEEcCC---Cc
Confidence 44443221 235789999999866 56789999998876 55665421 1223669999999987654 37
Q ss_pred EEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCC
Q 004368 356 ELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 356 ~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
+|+++++++. ..+.|+.. .+..+++.++.|++..... ...|+.++++ |.
T Consensus 208 ~I~~~~ldG~-~~~~Lt~~----~~~~~~~~g~~Iy~~~~~~-~~~i~~~~~D--G~ 256 (302)
T 3s25_A 208 AIVHVNINNP-NPVVLTEA----NIEHYNVYGSLIFYQRGGD-NPALCVVKND--GT 256 (302)
T ss_dssp EEEEECSSSC-CCEECSCS----CEEEEEEETTEEEEEECSS-SCEEEEEETT--SC
T ss_pred EEEEEECCCC-CeEEEeCC----CcceEEECCCEEEEEECCC-CcEEEEEECC--CC
Confidence 9999999873 33334422 2467999999997654333 3678888887 54
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=126.66 Aligned_cols=121 Identities=15% Similarity=0.084 Sum_probs=88.7
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHc---------CcEEEEEecCCCCCCchhH
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR---------GFIFAIAQIRGGGELGRQW 563 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~---------G~~v~~~~~RG~g~~G~~~ 563 (758)
..||.+|+...+.+++ +..|.||++||.++... .|...+..|.+. ||.|+++|+||.|.+...
T Consensus 74 ~i~g~~i~~~~~~~~~-----~~~~plll~HG~~~s~~--~~~~~~~~L~~~~~~~~~~~~~~~vi~~dl~G~G~S~~~- 145 (388)
T 4i19_A 74 EIDGATIHFLHVRSPE-----PDATPMVITHGWPGTPV--EFLDIIGPLTDPRAHGGDPADAFHLVIPSLPGFGLSGPL- 145 (388)
T ss_dssp EETTEEEEEEEECCSS-----TTCEEEEEECCTTCCGG--GGHHHHHHHHCGGGGTSCGGGCEEEEEECCTTSGGGCCC-
T ss_pred EECCeEEEEEEccCCC-----CCCCeEEEECCCCCCHH--HHHHHHHHHhCcccccCCCCCCeEEEEEcCCCCCCCCCC-
Confidence 3489888865443322 34678999999776543 355556667665 999999999998865431
Q ss_pred HhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 564 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 564 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
.....++.++...+..|+++ ...+++.++|+|+||.++..++.++|++++++++..|+
T Consensus 146 ------~~~~~~~~~~a~~~~~l~~~--lg~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 203 (388)
T 4i19_A 146 ------KSAGWELGRIAMAWSKLMAS--LGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQ 203 (388)
T ss_dssp ------SSCCCCHHHHHHHHHHHHHH--TTCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCC
T ss_pred ------CCCCCCHHHHHHHHHHHHHH--cCCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCC
Confidence 11134567777777766654 23468999999999999999999999999999998864
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=127.85 Aligned_cols=190 Identities=13% Similarity=-0.002 Sum_probs=107.7
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++||..+... .|......|.+ ||.|+.+|+||.|..... ....+++++.+.+..+++.-. ..+
T Consensus 51 ~~~lvllHG~~~~~~--~~~~l~~~L~~-~~~v~~~D~~G~G~S~~~--------~~~~~~~~~a~~~~~~l~~~~-~~~ 118 (280)
T 3qmv_A 51 PLRLVCFPYAGGTVS--AFRGWQERLGD-EVAVVPVQLPGRGLRLRE--------RPYDTMEPLAEAVADALEEHR-LTH 118 (280)
T ss_dssp SEEEEEECCTTCCGG--GGTTHHHHHCT-TEEEEECCCTTSGGGTTS--------CCCCSHHHHHHHHHHHHHHTT-CSS
T ss_pred CceEEEECCCCCChH--HHHHHHHhcCC-CceEEEEeCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHhC-CCC
Confidence 388999999655433 36666666665 999999999998865321 223345565555444443321 347
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCcee----EEEEcCCccchhhccCCCCCCCChhhh----hccC-CCC----C------
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFK----AAVAAVPFVDVLTTMLDPTIPLTTAEW----EEWG-DPW----K------ 656 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~----a~v~~~~~~d~~~~~~~~~~~~~~~~~----~e~g-~p~----~------ 656 (758)
++.++|+|+||.++..++.++|++.+ .+++.....-..... ..........+ ..++ .+. +
T Consensus 119 ~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (280)
T 3qmv_A 119 DYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGD-RADHTLSDTALREVIRDLGGLDDADTLGAAYFDR 197 (280)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGCSC-CCGGGSCHHHHHHHHHHHTCCC---------CCT
T ss_pred CEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCcCc-ccccccCHHHHHHHHHHhCCCChhhhcCHHHHHH
Confidence 89999999999999999999887665 555443321111000 00000000000 1111 110 0
Q ss_pred -----HHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCC
Q 004368 657 -----EEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS 727 (758)
Q Consensus 657 -----~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~ 727 (758)
...+..+..+.+. .+.++++| +|+++|++|..+++..+.++.+.+. ...+.++++ +||....
T Consensus 198 ~~~~~~~~~~~~~~~~~~-~~~~i~~P-~l~i~G~~D~~~~~~~~~~~~~~~~---~~~~~~~~~----ggH~~~~ 264 (280)
T 3qmv_A 198 RLPVLRADLRACERYDWH-PRPPLDCP-TTAFSAAADPIATPEMVEAWRPYTT---GSFLRRHLP----GNHFFLN 264 (280)
T ss_dssp THHHHHHHHHHHHTCCCC-CCCCBCSC-EEEEEEEECSSSCHHHHHTTGGGBS---SCEEEEEEE----EETTGGG
T ss_pred HHHHHHHHHHHHHhcccc-CCCceecC-eEEEEecCCCCcChHHHHHHHHhcC---CceEEEEec----CCCeEEc
Confidence 1112222333322 24566888 9999999999999877766544332 223444443 5997543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-09 Score=124.75 Aligned_cols=254 Identities=10% Similarity=0.048 Sum_probs=161.1
Q ss_pred EECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec---cc--cC--cceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PL--VG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~---~~--~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
.++++|.++.|.....|.+..-+|..+.++++.+-+ .+ .+ ...+++||||| .++|+....+.+...|++.++
T Consensus 83 ~p~~~g~~~y~~~~~~~~~~~~~~r~~~~~~~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl 162 (693)
T 3iuj_A 83 APFREGRYHYFFKNDGLQNQNVLWRQQEGKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDV 162 (693)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEECTTSCCEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEET
T ss_pred CCEEECCEEEEEEEcCCCceeEEEEeCCCCCcEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEEC
Confidence 345788888888877776666677766655543321 11 11 25668999999 899988766666678999999
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCC----------cceEEEEEeCCCCC-ceEEeecccc-----ce
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK----------ITRFVFYLDVSKPE-ELRVLTPRVV-----GV 332 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~----------~~~~l~~~d~~~~~-~~~~l~~~~~-----~~ 332 (758)
.+++... ..+... ...+++|| ||+.|++.+... ...+||+.++.++. ..+.+..... ..
T Consensus 163 ~tg~~~~-~~~~~~---k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~ 237 (693)
T 3iuj_A 163 ESKQPLE-TPLKDV---KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYV 237 (693)
T ss_dssp TTCSEEE-EEEEEE---ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEE
T ss_pred CCCCCCc-cccCCc---eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEE
Confidence 9874211 112111 12357899 999999988663 34689999998765 3345544332 12
Q ss_pred eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCC-cceeeecCCCCceeeeEEEeCCEEEEEEEeCC-eeEEEEEEcCCC
Q 004368 333 DTAASHRGNHFFITRRSDELFNSELLACPVDNTS-ETTVLIPHRESVKLQDIQLFIDHLAVYEREGG-LQKITTYRLPAV 410 (758)
Q Consensus 333 ~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~l~v~~l~~~ 410 (758)
...+|+||++|++.+..+ ....+|+.++++++. ....+.... +.....++..++.+++..+.++ ..+|.+++++.
T Consensus 238 ~~~~SpDg~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~- 314 (693)
T 3iuj_A 238 GATVTEDDRFLLISAANS-TSGNRLYVKDLSQENAPLLTVQGDL-DADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAAN- 314 (693)
T ss_dssp EEEECTTSCEEEEEEESS-SSCCEEEEEETTSTTCCCEEEECSS-SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTS-
T ss_pred EEEEcCCCCEEEEEEccC-CCCcEEEEEECCCCCCceEEEeCCC-CceEEEEeccCCEEEEEECCCCCCCEEEEEeCCC-
Confidence 345999999999888765 334689999987643 233355443 3333347788999998887654 45677787763
Q ss_pred CCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 411 GEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 411 g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
+. ...+ +.+ .|+....+ +++++++.+++.+..-.. ..|+.+|+.++..
T Consensus 315 ~~-~~~~---~~l-~~~~~~~~---~~s~~g~~lv~~~~~~g~-~~l~~~d~~g~~~ 362 (693)
T 3iuj_A 315 PG-PAHW---RDL-IPERQQVL---TVHSGSGYLFAEYMVDAT-ARVEQFDYEGKRV 362 (693)
T ss_dssp CC-GGGC---EEE-ECCCSSCE---EEEEETTEEEEEEEETTE-EEEEEECTTSCEE
T ss_pred CC-cccc---EEE-ecCCCCEE---EEEEECCEEEEEEEECCe-eEEEEEECCCCee
Confidence 22 1001 122 22222222 567788888777754332 4788999886653
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-09 Score=128.37 Aligned_cols=242 Identities=11% Similarity=0.041 Sum_probs=143.0
Q ss_pred EEeeEEECCCCCEEEEEEeC---CCCeEEEEEEEECCCCceeeccccC-cc-------eeEEEecCCeEEEEEeCCC--C
Q 004368 192 SVGCFQVSPDNKLVAYAEDT---KGDEIYTVYVIDIETGTPVGKPLVG-VT-------ASVEWAGNEALVYITMDEI--L 258 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~---~G~e~~~l~v~dl~~g~~~~~~~~~-~~-------~~~~wspDg~l~y~~~~~~--~ 258 (758)
.+..++|||||++|||+... .| ..+|+++|+++|+..+++... .. ..++|||||+++|++.... .
T Consensus 54 ~v~~~~~SPDG~~la~~s~~~~~~~--~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~ 131 (1045)
T 1k32_A 54 VINNARFFPDGRKIAIRVMRGSSLN--TADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFS 131 (1045)
T ss_dssp EEEEEEECTTSSEEEEEEEESTTCC--EEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSST
T ss_pred cccCeEECCCCCEEEEEEeeccCCC--CCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCc
Confidence 46789999999999999875 34 579999999999876654322 23 6799999998777775321 1
Q ss_pred CCceEEEEEcCCCCCCcEEEeee------------------------------------------------cCCceeeEE
Q 004368 259 RPDKAWLHKLEADQSNDICLYHE------------------------------------------------KDDIYSLGL 290 (758)
Q Consensus 259 ~~~~v~~~~l~~~~~~~~~v~~~------------------------------------------------~~~~~~~~~ 290 (758)
...+||.+++.++.. ..+... ........+
T Consensus 132 ~~~~l~~~~~~~g~~--~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~ 209 (1045)
T 1k32_A 132 SMTCLYRVENDGINF--VPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSP 209 (1045)
T ss_dssp TCCEEEEEEGGGTEE--EECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEE
T ss_pred ccceEEEEECCCCCe--EEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccce
Confidence 234688877755421 111100 001111245
Q ss_pred EEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCccee
Q 004368 291 QASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV 370 (758)
Q Consensus 291 ~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~ 370 (758)
.|++| .+++.+...+...||.++++++. .+.++.........|+|||++|++.. + ..|+.+++.. .....
T Consensus 210 ~~s~d--~l~~~~~~dg~~~l~~~~~~g~~-~~~l~~~~~~~~~~~SpDG~~la~~~--~----~~i~~~d~~~-~~l~~ 279 (1045)
T 1k32_A 210 VIVGH--RIYFITDIDGFGQIYSTDLDGKD-LRKHTSFTDYYPRHLNTDGRRILFSK--G----GSIYIFNPDT-EKIEK 279 (1045)
T ss_dssp EEETT--EEEEEECTTSSCEEEEEETTSCS-CEECCCCCSSCEEEEEESSSCEEEEE--T----TEEEEECTTT-CCEEE
T ss_pred EEeCC--EEEEEEeccCceEEEEEeCCCCc-ceEecCCCCcceeeEcCCCCEEEEEe--C----CEEEEecCCc-eEeee
Confidence 67777 66666666667889999987765 66666543322346999999988874 2 4688888733 11111
Q ss_pred eecC-----------CCCceeeeEE-EeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCccc-ccCCCCc
Q 004368 371 LIPH-----------RESVKLQDIQ-LFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVY-SIDPSES 437 (758)
Q Consensus 371 l~~~-----------~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~-~i~~~~~ 437 (758)
+... .....-..++ ++++.+++.. ++ .++++++. +... ..+..... .+..+.+
T Consensus 280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~--~i~~~~~~--~~~~--------~~~~~~~~~~~~~~~~ 345 (1045)
T 1k32_A 280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RG--QAFIQDVS--GTYV--------LKVPEPLRIRYVRRGG 345 (1045)
T ss_dssp CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TT--EEEEECTT--SSBE--------EECSCCSCEEEEEECS
T ss_pred eccCcccccccccccccccceeeecCCCCCEEEEEE--cC--EEEEEcCC--CCce--------EEccCCCcceEEeeeE
Confidence 1111 0012222344 4455676554 33 46777665 3322 11111111 2233456
Q ss_pred ccCCcEEEEEEecCCCCCEEE-EEECCCCc
Q 004368 438 VFSSRILRFHYSSLRTPPSVY-DYDMDMGI 466 (758)
Q Consensus 438 ~~d~~~l~~~~sS~~~P~~i~-~~d~~~~~ 466 (758)
+ +++.+++... ...++ .+|+.+++
T Consensus 346 s-dg~~l~~~s~----~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 346 D-TKVAFIHGTR----EGDFLGIYDYRTGK 370 (1045)
T ss_dssp S-SEEEEEEEET----TEEEEEEEETTTCC
T ss_pred c-CCCeEEEEEC----CCceEEEEECCCCC
Confidence 6 7766654332 45788 88888776
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-07 Score=98.99 Aligned_cols=244 Identities=11% Similarity=-0.002 Sum_probs=144.8
Q ss_pred EeeEEECCCCCEEEEEEeCCC--CeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 193 VGCFQVSPDNKLVAYAEDTKG--DEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G--~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
...+.+||||++|+++...+. .....|+++|+++++.... ........++|+||| .+++.... ...|+.+++
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~----~~~v~~~d~ 118 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTV----NSAVTAIDA 118 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETT----TTEEEEEET
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecC----CCEEEEEeC
Confidence 446799999999965553321 1246899999999987653 333334568999999 45544432 236888898
Q ss_pred CCCCCCcEEEeeecCC--------ceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-ccc-ceeeEEee
Q 004368 269 EADQSNDICLYHEKDD--------IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVV-GVDTAASH 338 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~--------~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~-~~~~~~s~ 338 (758)
.++.. ...+..... ....++.++|||++|++.... ....|+++|+.+++ .....+ ... .....++|
T Consensus 119 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 119 KTGEV--KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG-KESVIWVVDGGNIK-LKTAIQNTGKMSTGLALDS 194 (353)
T ss_dssp TTCCE--EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-SSCEEEEEETTTTE-EEEEECCCCTTCCCCEEET
T ss_pred CCCee--EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-CCceEEEEcCCCCc-eEEEecCCCCccceEEECC
Confidence 77632 222222111 112457899999998876532 24579999998876 333222 111 12345899
Q ss_pred cCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecC-C--CCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCCCCCc
Q 004368 339 RGNHFFITRRSDELFNSELLACPVDNTSETTVLIPH-R--ESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEP 413 (758)
Q Consensus 339 dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~-~--~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~~g~~ 413 (758)
+|+++|+... +..|+.+|+.+. ...+.+.. . ....+.++.++ ++.+++... +...+.++++.. ++.
T Consensus 195 dg~~l~~~~~-----~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~-~~~ 265 (353)
T 3vgz_A 195 EGKRLYTTNA-----DGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDS--KAAEVLVVDTRN-GNI 265 (353)
T ss_dssp TTTEEEEECT-----TSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES--SSSEEEEEETTT-CCE
T ss_pred CCCEEEEEcC-----CCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC--CCCEEEEEECCC-CcE
Confidence 9998887643 257888998763 22222222 1 12223344554 566755543 334588888863 332
Q ss_pred cccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 414 LKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 414 ~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
+ ..+..+.+ ....++++++.++++.. .-..++.+|..+++
T Consensus 266 ~------~~~~~~~~----~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 266 L------AKVAAPES----LAVLFNPARNEAYVTHR---QAGKVSVIDAKSYK 305 (353)
T ss_dssp E------EEEECSSC----CCEEEETTTTEEEEEET---TTTEEEEEETTTTE
T ss_pred E------EEEEcCCC----ceEEECCCCCEEEEEEC---CCCeEEEEECCCCe
Confidence 2 22332221 23455678877655442 23689999998887
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-10 Score=115.14 Aligned_cols=214 Identities=16% Similarity=0.091 Sum_probs=129.3
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCc--EEEEEecCCCCCC--chhHHh--------cccccCCc----ChHhHH
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGF--IFAIAQIRGGGEL--GRQWYE--------NGKFLKKK----NTFTDF 579 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~--~v~~~~~RG~g~~--G~~~~~--------~~~~~~~~----~~~~D~ 579 (758)
.+.||++||-.+. ...|...+..|.++|| .|+.+|+++.|.. ...+.. -+...... ...+++
T Consensus 6 ~~pvvliHG~~~~--~~~~~~l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~l 83 (249)
T 3fle_A 6 TTATLFLHGYGGS--ERSETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYWI 83 (249)
T ss_dssp CEEEEEECCTTCC--GGGTHHHHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHHH
T ss_pred CCcEEEECCCCCC--hhHHHHHHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHHH
Confidence 4567889995443 3347777888888887 5888898877642 111100 00001111 134567
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCC-----ceeEEEEcCCccchhhccCCCCCCCChhhhhccCCC
Q 004368 580 IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD-----LFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP 654 (758)
Q Consensus 580 ~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p 654 (758)
.+++++|.++.. .+++.++||||||.++..++.++|+ .++.+|+.++..+-...+.+ +.....+...|.|
T Consensus 84 ~~~i~~l~~~~~--~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~---~~~~~~~~~~g~p 158 (249)
T 3fle_A 84 KEVLSQLKSQFG--IQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNE---NVNEIIVDKQGKP 158 (249)
T ss_dssp HHHHHHHHHTTC--CCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSS---CTTTSCBCTTCCB
T ss_pred HHHHHHHHHHhC--CCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccC---CcchhhhcccCCC
Confidence 788888877643 3699999999999999999988874 67888877765543322111 1111112234555
Q ss_pred C-CHHHHHHHHhcCcccccCCCCCCeEEEeccC------CCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCC
Q 004368 655 W-KEEFYFYMKSYSPVDNVKAQNYPHILVTAGL------NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS 727 (758)
Q Consensus 655 ~-~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~------~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~ 727 (758)
. ....|+.|... ...+.+.++| ||.|+|. .|..||...++.+..-++......+.+.+.- .++.|....
T Consensus 159 ~~~~~~~~~l~~~--~~~~p~~~~~-vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~~~~~y~e~~v~g-~~a~Hs~l~ 234 (249)
T 3fle_A 159 SRMNAAYRQLLSL--YKIYCGKEIE-VLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGSTKSYQEMKFKG-AKAQHSQLH 234 (249)
T ss_dssp SSCCHHHHHTGGG--HHHHTTTTCE-EEEEEEECCSSSCBSSSSBHHHHHTHHHHSTTCSSEEEEEEEES-GGGSTGGGG
T ss_pred cccCHHHHHHHHH--HhhCCccCCe-EEEEeccCCCCCCCCCcccHHHHHHHHHHHhhCCCceEEEEEeC-CCCchhccc
Confidence 3 23455555433 2333334566 9999998 7999999888877666666555555555541 247897654
Q ss_pred ChHHHHHHHHHHHHHH
Q 004368 728 GRFERLREAAFTYTFL 743 (758)
Q Consensus 728 ~~~~~~~~~~~~~~fl 743 (758)
...+..+. +..||
T Consensus 235 ~n~~V~~~---I~~FL 247 (249)
T 3fle_A 235 ENKDVANE---IIQFL 247 (249)
T ss_dssp GCHHHHHH---HHHHH
T ss_pred cCHHHHHH---HHHHh
Confidence 44443333 45665
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-08 Score=104.19 Aligned_cols=243 Identities=11% Similarity=0.033 Sum_probs=134.5
Q ss_pred EEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCe-EEEEEeCCCCCCceEEEEEcCCCCC
Q 004368 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEA-LVYITMDEILRPDKAWLHKLEADQS 273 (758)
Q Consensus 196 ~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~-l~y~~~~~~~~~~~v~~~~l~~~~~ 273 (758)
..++++++++..+...++ .|+++|+++++.... ........++|+|||+ ++.+.... ..|+.+++.++..
T Consensus 3 ~~~~~~~~~~~v~~~~~~----~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLR----RISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFC----QTLVQIETQLEPP 74 (331)
T ss_dssp ----CCCCEEEEEEGGGT----EEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTT----CEEEEEECSSSSC
T ss_pred eeEcCCCCEEEEEecCCC----eEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCC----CeEEEEECCCCce
Confidence 456778877655554333 799999999988653 3222222789999995 55444322 2689999877632
Q ss_pred CcEEEeeecCCceeeE-EEEcCCCcEEEEEecCC-cceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEEEEcCC
Q 004368 274 NDICLYHEKDDIYSLG-LQASESKKFLFIASESK-ITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSD 350 (758)
Q Consensus 274 ~~~~v~~~~~~~~~~~-~~~S~Dg~~l~~~s~~~-~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~ 350 (758)
. ......... ... +.++|||++|+ .+... ....|+++|+++++ .....+.... ....|+|||+++|+....+
T Consensus 75 ~-~~~~~~~~~--~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 75 K-VVAIQEGQS--SMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNK-FISTIPIPYDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp E-EEEEEECSS--CCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTE-EEEEEECCTTEEEEEECTTSSCEEEEEETT
T ss_pred e-EEecccCCC--CccceEECCCCCEEE-EecCCCCcccEEEEECCCCC-eEEEEECCCCccceEECCCCCEEEEEecCC
Confidence 0 223332221 123 78999999988 33322 23389999998876 3332222222 3345999999887776543
Q ss_pred CCCCcEEEEEeCCCCCcc----eeeecCCCCceeeeEEEeC--CEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceee
Q 004368 351 ELFNSELLACPVDNTSET----TVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE 424 (758)
Q Consensus 351 ~~~~~~L~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~ 424 (758)
.. .|..++++..+.. ..+++... ....+.+.. +.+++....+ ..+.+|++.. ++..+ ..-.
T Consensus 150 --~~-~i~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~--~~v~v~d~~~-~~~~~-----~~~~ 216 (331)
T 3u4y_A 150 --AN-TVRRFKIDADGVLFDTGQEFISGGT--RPFNITFTPDGNFAFVANLIG--NSIGILETQN-PENIT-----LLNA 216 (331)
T ss_dssp --TT-EEEEEEECTTCCEEEEEEEEECSSS--SEEEEEECTTSSEEEEEETTT--TEEEEEECSS-TTSCE-----EEEE
T ss_pred --Cc-eEEEEEECCCCcEeecCCccccCCC--CccceEECCCCCEEEEEeCCC--CeEEEEECCC-Ccccc-----eeee
Confidence 12 1444443321211 12333322 234555554 4566554444 3588898863 33200 0111
Q ss_pred ccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEE
Q 004368 425 FIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV 468 (758)
Q Consensus 425 ~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~ 468 (758)
++.. ..+..+.++++++.++++.. ....++.+|+.+++.+
T Consensus 217 ~~~~-~~~~~~~~spdg~~l~v~~~---~~~~i~~~d~~~~~~~ 256 (331)
T 3u4y_A 217 VGTN-NLPGTIVVSRDGSTVYVLTE---STVDVFNFNQLSGTLS 256 (331)
T ss_dssp EECS-SCCCCEEECTTSSEEEEECS---SEEEEEEEETTTTEEE
T ss_pred ccCC-CCCceEEECCCCCEEEEEEc---CCCEEEEEECCCCcee
Confidence 2221 12344567788887755432 3456999999988853
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-10 Score=117.95 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=72.4
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++||..+.. ..|...+..|. .+|.|+.+|.||+|.+... ....+++++.+.+..+++. .+-+
T Consensus 27 ~p~vvllHG~~~~~--~~w~~~~~~L~-~~~rvia~DlrGhG~S~~~--------~~~~~~~~~a~dl~~ll~~--l~~~ 93 (276)
T 2wj6_A 27 GPAILLLPGWCHDH--RVYKYLIQELD-ADFRVIVPNWRGHGLSPSE--------VPDFGYQEQVKDALEILDQ--LGVE 93 (276)
T ss_dssp SCEEEEECCTTCCG--GGGHHHHHHHT-TTSCEEEECCTTCSSSCCC--------CCCCCHHHHHHHHHHHHHH--HTCC
T ss_pred CCeEEEECCCCCcH--HHHHHHHHHHh-cCCEEEEeCCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHH--hCCC
Confidence 48899999965433 33555555554 6799999999999976431 1123456665555444443 1236
Q ss_pred cEEEEEeChhHHHHHHHHhhC-CCceeEEEEcCC
Q 004368 596 KLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVP 628 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~ 628 (758)
++.++|+|+||.++..++.++ |++++++|+..+
T Consensus 94 ~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~ 127 (276)
T 2wj6_A 94 TFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDW 127 (276)
T ss_dssp SEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESC
T ss_pred ceEEEEECHHHHHHHHHHHHhCHHhhceEEEecc
Confidence 899999999999999999999 999999988764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-08 Score=105.95 Aligned_cols=237 Identities=13% Similarity=0.096 Sum_probs=137.7
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccC----------cceeEEEecCC-eEEEEEeCCCCCCc
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG----------VTASVEWAGNE-ALVYITMDEILRPD 261 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~----------~~~~~~wspDg-~l~y~~~~~~~~~~ 261 (758)
..+.|||||++|+++....+ .|+++|+++++.... .... ....++|+||| .+|...... ..
T Consensus 92 ~~~~~s~dg~~l~v~~~~~~----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~---~~ 164 (353)
T 3vgz_A 92 FGATINNTTQTLWFGNTVNS----AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK---ES 164 (353)
T ss_dssp CSEEEETTTTEEEEEETTTT----EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS---SC
T ss_pred ceEEECCCCCEEEEEecCCC----EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC---Cc
Confidence 46789999999876665444 799999999987542 2221 13458999999 555444222 23
Q ss_pred eEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc---c-e-eeEE
Q 004368 262 KAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV---G-V-DTAA 336 (758)
Q Consensus 262 ~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~---~-~-~~~~ 336 (758)
.|+.+++.++. ....+... ......+.++|||++|++... ...|+++|+.+++....+..... . . ...+
T Consensus 165 ~i~~~d~~~~~--~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 165 VIWVVDGGNIK--LKTAIQNT-GKMSTGLALDSEGKRLYTTNA---DGELITIDTADNKILSRKKLLDDGKEHFFINISL 238 (353)
T ss_dssp EEEEEETTTTE--EEEEECCC-CTTCCCCEEETTTTEEEEECT---TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE
T ss_pred eEEEEcCCCCc--eEEEecCC-CCccceEEECCCCCEEEEEcC---CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE
Confidence 58888987662 22233211 111235679999999888654 35789999988762222221111 1 1 1348
Q ss_pred eecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCcccc
Q 004368 337 SHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKS 416 (758)
Q Consensus 337 s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~ 416 (758)
+|+|+.+|+.... ...|+.+|+.+.. ....++.... .-..++.+++.+++....++ .+.++++.. ++.+
T Consensus 239 s~dg~~l~~~~~~----~~~v~~~d~~~~~-~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~--~v~~~d~~~-~~~~-- 307 (353)
T 3vgz_A 239 DTARQRAFITDSK----AAEVLVVDTRNGN-ILAKVAAPES-LAVLFNPARNEAYVTHRQAG--KVSVIDAKS-YKVV-- 307 (353)
T ss_dssp ETTTTEEEEEESS----SSEEEEEETTTCC-EEEEEECSSC-CCEEEETTTTEEEEEETTTT--EEEEEETTT-TEEE--
T ss_pred CCCCCEEEEEeCC----CCEEEEEECCCCc-EEEEEEcCCC-ceEEECCCCCEEEEEECCCC--eEEEEECCC-CeEE--
Confidence 9999988776543 3578999987632 2222322222 11244455667766554444 578888763 3321
Q ss_pred ccCCceeeccCcccccCCCCcccCCcEEEEEEec-------CCCCCEEEEEE
Q 004368 417 LQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSS-------LRTPPSVYDYD 461 (758)
Q Consensus 417 l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS-------~~~P~~i~~~d 461 (758)
..+..+. ....+.++++++.++++..+ ...|..+++++
T Consensus 308 ----~~~~~~~---~~~~~~~s~dg~~l~v~~~~~~~~~~~~~~~~~v~~i~ 352 (353)
T 3vgz_A 308 ----KTFDTPT---HPNSLALSADGKTLYVSVKQKSTKQQEATQPDDVIRIA 352 (353)
T ss_dssp ----EEEECCS---EEEEEEECTTSCEEEEEEECCCBTTBCCSSCEEEEEEE
T ss_pred ----EEEecCC---CCCeEEEcCCCCEEEEEEcccccccccccCCCcEEEEe
Confidence 1222211 12234566788878777765 23445555554
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.10 E-value=5.1e-11 Score=134.23 Aligned_cols=226 Identities=15% Similarity=0.081 Sum_probs=130.8
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC-CCCChH--HH-HHHH-cCcEEEEEecCCCCCCchhHHhc-
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSS--RL-SLLD-RGFIFAIAQIRGGGELGRQWYEN- 566 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~--~~-~l~~-~G~~v~~~~~RG~g~~G~~~~~~- 566 (758)
+.|... +.++.|+.. ..+++.|+||++|||...... ..|... +. .++. .|++|+.+|||.+. +|.-....
T Consensus 102 sedcl~--l~v~~P~~~-~~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~-~gf~~~~~~ 177 (544)
T 1thg_A 102 NEDCLY--LNVFRPAGT-KPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGP-FGFLGGDAI 177 (544)
T ss_dssp CSCCCE--EEEEEETTC-CTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHH-HHHCCSHHH
T ss_pred CCCCeE--EEEEeCCCC-CCCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCc-ccCCCcccc
Confidence 556644 455678764 445678999999998543322 223321 11 2222 48999999999754 22100000
Q ss_pred ccccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhC--------CCceeEEEEcCCccchhhc
Q 004368 567 GKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--------PDLFKAAVAAVPFVDVLTT 635 (758)
Q Consensus 567 ~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--------p~~f~a~v~~~~~~d~~~~ 635 (758)
.....+...+.|..+|++|+.++ ...|++||.|+|+|+||.+++.++... ..+|+++|+.+|..-....
T Consensus 178 ~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~~~~~~~ 257 (544)
T 1thg_A 178 TAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGPLPYHD 257 (544)
T ss_dssp HHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCCCCCSS
T ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEecccccccCc
Confidence 00123345689999999999876 247999999999999999998777652 4689999999985321111
Q ss_pred cCCCCCCCChhhh-hccCCCCC---HHHHHHHHhcCcccccCCC---------CCCe-EEEeccCCCCCCCChHHHHHHH
Q 004368 636 MLDPTIPLTTAEW-EEWGDPWK---EEFYFYMKSYSPVDNVKAQ---------NYPH-ILVTAGLNDPRVMYSEPAKFVA 701 (758)
Q Consensus 636 ~~~~~~~~~~~~~-~e~g~p~~---~~~~~~l~~~sp~~~i~~~---------~~P~-~Li~~G~~D~~V~~~~~~~~~~ 701 (758)
............+ ...|.... .+..+.|++.++...++.. ..++ .+......|..+.+.++.++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~gc~~~~~~~~~~~cLr~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~P~~Dg~~l~~~p~~~~~ 337 (544)
T 1thg_A 258 SSSVGPDISYNRFAQYAGCDTSASANDTLECLRSKSSSVLHDAQNSYDLKDLFGLLPQFLGFGPRPDGNIIPDAAYELFR 337 (544)
T ss_dssp SCCSSSSCHHHHHHHHHTCCTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHSTTTSCGGGTSCCCCCSSSSCSCHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhcCCHHHHHHhhhhcccccccccccccccceeeeCCcccCcCHHHHHh
Confidence 1000100001111 22354421 2455667776654322211 1111 1223445677788888888777
Q ss_pred HHHhcCCCCceEEEEecCCCCCCC
Q 004368 702 KLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 702 ~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
+.+..++ ++++-...++||.+
T Consensus 338 ~g~~~~v---p~l~G~~~~Eg~~f 358 (544)
T 1thg_A 338 SGRYAKV---PYISGNQEDEGTAF 358 (544)
T ss_dssp TTCSCCC---CEEEEEETBTTTTT
T ss_pred cCCCCCc---cEEEEeecCchhhh
Confidence 6554444 34555566888865
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.7e-08 Score=102.73 Aligned_cols=250 Identities=11% Similarity=0.078 Sum_probs=136.0
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCce-eec-cccCccee-EEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGK-PLVGVTAS-VEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~-~~~-~~~~~~~~-~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
.+.|||||++|+++....+ .|+++|+++++. ... ........ ++|+|||+.+|+... ......|+++++.++
T Consensus 44 ~~~~s~dg~~l~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQ----TLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTG-LNHPFNMQSYSFLKN 118 (331)
T ss_dssp EEEECSSSCEEEEEESTTC----EEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCC-SSSSCEEEEEETTTT
T ss_pred eEEEcCCCCEEEEEeCCCC----eEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecC-CCCcccEEEEECCCC
Confidence 7899999998876665333 799999999986 332 22222344 899999954444332 222236889998766
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcc-eEEEEEeCCCCC-ce-EEeeccccc-eeeEEeecCCEEEEEE
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKIT-RFVFYLDVSKPE-EL-RVLTPRVVG-VDTAASHRGNHFFITR 347 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~-~~l~~~d~~~~~-~~-~~l~~~~~~-~~~~~s~dg~~l~~~s 347 (758)
. ....+.... ....+.|+|||++|++....... -.+|.++.++.. .. ......... ....|+|||+++|+..
T Consensus 119 ~--~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 194 (331)
T 3u4y_A 119 K--FISTIPIPY--DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN 194 (331)
T ss_dssp E--EEEEEECCT--TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE
T ss_pred C--eEEEEECCC--CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe
Confidence 2 222332222 22468899999998776554343 445555432211 01 111121112 2334999999888876
Q ss_pred cCCCCCCcEEEEEeCCCCCcc--eeeecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCCCCCccccccC-Cce
Q 004368 348 RSDELFNSELLACPVDNTSET--TVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQG-GKS 422 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~-~~~ 422 (758)
..+ ..|..+|+++.... ...++... .+..+.+. ++.+++.. .+...+.++++.. ++ ++.+.. ...
T Consensus 195 ~~~----~~v~v~d~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~--~~~~~i~~~d~~~-~~-~~~~~~~~~~ 264 (331)
T 3u4y_A 195 LIG----NSIGILETQNPENITLLNAVGTNN--LPGTIVVSRDGSTVYVLT--ESTVDVFNFNQLS-GT-LSFVKSFGHG 264 (331)
T ss_dssp TTT----TEEEEEECSSTTSCEEEEEEECSS--CCCCEEECTTSSEEEEEC--SSEEEEEEEETTT-TE-EEEEEEEECC
T ss_pred CCC----CeEEEEECCCCcccceeeeccCCC--CCceEEECCCCCEEEEEE--cCCCEEEEEECCC-Cc-eeeecccccc
Confidence 543 46888888753321 22333332 23445554 45565443 3455688888763 22 111100 000
Q ss_pred eec-cCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 423 VEF-IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 423 i~~-p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
+.. +.+......+.++++++.++++.. .-..+..+|+.++.
T Consensus 265 ~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 265 LLIDPRPLFGANQMALNKTETKLFISAN---ISRELKVFTISGKV 306 (331)
T ss_dssp CCCCCGGGTTCCCEEECTTSSEEEEEET---TTTEEEEEETTSCE
T ss_pred cccCCCCcccccceEECCCCCEEEEecC---CCCcEEEEEecCCc
Confidence 000 111111122466778887765442 23568888887654
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.6e-10 Score=112.89 Aligned_cols=212 Identities=14% Similarity=-0.021 Sum_probs=119.4
Q ss_pred CEEEEecCCCccCCCCCCChHHHHHHHcCcE---EEEEecCCCCC-------CchhHHh---cccccC---CcChHhHHH
Q 004368 517 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFI---FAIAQIRGGGE-------LGRQWYE---NGKFLK---KKNTFTDFI 580 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~---v~~~~~RG~g~-------~G~~~~~---~~~~~~---~~~~~~D~~ 580 (758)
|.||++||..+.. ..|...+..|.++|++ ++.+++++.|. .+..+.. .+.... -....+|+.
T Consensus 4 ~pvvllHG~~~~~--~~~~~l~~~L~~~~~~~~~~~~~~v~~~G~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~ 81 (254)
T 3ds8_A 4 IPIILIHGSGGNA--SSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQATPDDWSKWLK 81 (254)
T ss_dssp CCEEEECCTTCCT--TTTHHHHHHHHHTTCCCCCEEEEEEETTTEEEEESCCCTTCSSCEEEEEESSTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCCc--chHHHHHHHHHHhcCCCceEEEEEEcCCCeEEEEEEeccCCCCCEEEEEecCCCCCHHHHHHHHH
Confidence 4577899954443 3477777888888764 34444433321 0000000 000001 112235566
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCC-----ceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCC
Q 004368 581 ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD-----LFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPW 655 (758)
Q Consensus 581 ~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~ 655 (758)
++++.|.++..+ +++.++|||+||.++..++.++|+ .++++|+.++..+....... ...+ ...+.|.
T Consensus 82 ~~i~~l~~~~~~--~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~-~~~~-----~~~~~p~ 153 (254)
T 3ds8_A 82 IAMEDLKSRYGF--TQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDN-GMDL-----SFKKLPN 153 (254)
T ss_dssp HHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHH-CSCT-----TCSSCSS
T ss_pred HHHHHHHHHhCC--CceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCccccccc-cccc-----ccccCCc
Confidence 666777665322 799999999999999999999998 88999988876553322100 0000 1123343
Q ss_pred CHHHHHHHHhcCcccccCCCCCCeEEEeccC------CCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCCh
Q 004368 656 KEEFYFYMKSYSPVDNVKAQNYPHILVTAGL------NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGR 729 (758)
Q Consensus 656 ~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~------~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~ 729 (758)
....+..+... ...+.+ +.| +|.++|. +|..||+..++.+...+.......+.+.+.. .+++|......
T Consensus 154 ~~~~~~~~~~~--~~~~~~-~~~-vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~~~~~~~~~~~~g-~~a~Hs~l~~~ 228 (254)
T 3ds8_A 154 STPQMDYFIKN--QTEVSP-DLE-VLAIAGELSEDNPTDGIVPTISSLATRLFMPGSAKAYIEDIQVG-EDAVHQTLHET 228 (254)
T ss_dssp CCHHHHHHHHT--GGGSCT-TCE-EEEEEEESBTTBCBCSSSBHHHHTGGGGTSBTTBSEEEEEEEES-GGGCGGGGGGS
T ss_pred chHHHHHHHHH--HhhCCC-CcE-EEEEEecCCCCCCCCcEeeHHHHHHHHHHhhccCcceEEEEEeC-CCCchhcccCC
Confidence 22333333221 122222 455 9999999 9999999988887766665433343444441 24678754444
Q ss_pred HHHHHHHHHHHHHHHHh
Q 004368 730 FERLREAAFTYTFLMRA 746 (758)
Q Consensus 730 ~~~~~~~~~~~~fl~~~ 746 (758)
.+..+ .+..||.+.
T Consensus 229 ~~v~~---~i~~fL~~~ 242 (254)
T 3ds8_A 229 PKSIE---KTYWFLEKF 242 (254)
T ss_dssp HHHHH---HHHHHHHTC
T ss_pred HHHHH---HHHHHHHHh
Confidence 43232 245666654
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-10 Score=130.07 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=92.6
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCC-CCChHHHHHHH-cCcEEEEEecC-CCCCCchhHHhcccc
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNSSRLSLLD-RGFIFAIAQIR-GGGELGRQWYENGKF 569 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~~~~l~~-~G~~v~~~~~R-G~g~~G~~~~~~~~~ 569 (758)
+.|...+ .++.|+.. ..+++.|+||++|||....... .|.. ..|+. +|++|+.+||| |..+++.... ..
T Consensus 95 ~edcl~l--nv~~P~~~-~~~~~~Pv~v~iHGG~~~~g~~~~~~~--~~la~~~g~vvv~~nYRlg~~gf~~~~~---~~ 166 (542)
T 2h7c_A 95 SEDCLYL--NIYTPADL-TKKNRLPVMVWIHGGGLMVGAASTYDG--LALAAHENVVVVTIQYRLGIWGFFSTGD---EH 166 (542)
T ss_dssp ESCCCEE--EEEECSCT-TSCCCEEEEEEECCSTTTSCCSTTSCC--HHHHHHHTCEEEEECCCCHHHHHCCCSS---TT
T ss_pred CCCCcEE--EEEECCCC-CCCCCCCEEEEECCCcccCCCccccCH--HHHHhcCCEEEEecCCCCccccCCCCCc---cc
Confidence 5566544 45677765 4456789999999985443322 2433 34554 79999999999 3222221110 11
Q ss_pred cCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhh--CCCceeEEEEcCCccch
Q 004368 570 LKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPFVDV 632 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~~~d~ 632 (758)
..+...+.|..++++|+.++ ...||++|.|+|+|+||.++..++.. .+.+|+++|+.+|..+.
T Consensus 167 ~~~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~~ 234 (542)
T 2h7c_A 167 SRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVALT 234 (542)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTC
T ss_pred CccchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCccC
Confidence 22334578999999999775 34799999999999999999888876 36799999999997653
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.7e-08 Score=104.88 Aligned_cols=199 Identities=11% Similarity=0.102 Sum_probs=117.9
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
+..++|||||++||.... +....|+|||+.+++.+.. .-.+....++|||||+++.+..++ .+.++...++
T Consensus 136 ~~~v~fSpDg~~la~as~---~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-----~~~~~~~~~~ 207 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASS---KVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-----SLEVISTVTG 207 (365)
T ss_dssp EEEEEECTTSSCEEEEES---CSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-----CEEEEETTTC
T ss_pred EEEEEEcCCCCEEEEEEC---CCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-----eEEEEEeccC
Confidence 345789999999987653 2235899999999987653 222335669999999444444332 2555565554
Q ss_pred CCCcEEE-eeecCCceeeEEEEcCCCcEEEEEecCCc-ceEEEEEeCCCCC-c---eEEeeccccceee-EEeecCCEEE
Q 004368 272 QSNDICL-YHEKDDIYSLGLQASESKKFLFIASESKI-TRFVFYLDVSKPE-E---LRVLTPRVVGVDT-AASHRGNHFF 344 (758)
Q Consensus 272 ~~~~~~v-~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~-~~~l~~~d~~~~~-~---~~~l~~~~~~~~~-~~s~dg~~l~ 344 (758)
.. ... ...........+.|+|||++++..+.+.+ ...++.+++.... . ...+......+.. .|+|||+.|+
T Consensus 208 ~~--~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~la 285 (365)
T 4h5i_A 208 SC--IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAV 285 (365)
T ss_dssp CE--EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEE
T ss_pred cc--eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceE
Confidence 22 211 11112233446889999999887765543 3456777766543 1 1223333333433 4999999887
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
..+.+ ..|..+|+.+. .....+.......+..+++..| .+++....++. |+||+++.
T Consensus 286 sgs~D-----~~V~iwd~~~~-~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t--vrvw~ip~ 343 (365)
T 4h5i_A 286 LASND-----NSIALVKLKDL-SMSKIFKQAHSFAITEVTISPDSTYVASVSAANT--IHIIKLPL 343 (365)
T ss_dssp EEETT-----SCEEEEETTTT-EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSE--EEEEECCT
T ss_pred EEcCC-----CEEEEEECCCC-cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCe--EEEEEcCC
Confidence 76654 34777787652 2211222222334566666654 34456666765 77889874
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.8e-11 Score=132.40 Aligned_cols=221 Identities=16% Similarity=0.113 Sum_probs=127.7
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCC-CCChH--H-HHHH-HcCcEEEEEecCCCC-CC--chhHH
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNSS--R-LSLL-DRGFIFAIAQIRGGG-EL--GRQWY 564 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~--~-~~l~-~~G~~v~~~~~RG~g-~~--G~~~~ 564 (758)
+.|.. .+.++.|+.. ..+++.|+||++|||....... .+... + ..++ ..|++|+.+|||.+. ++ +.+..
T Consensus 94 sedcl--~l~v~~P~~~-~~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~~~~~ 170 (534)
T 1llf_A 94 SEDCL--TINVVRPPGT-KAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIK 170 (534)
T ss_dssp CSCCC--EEEEEECTTC-CTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHH
T ss_pred CCCCe--EEEEEECCCC-CCCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCCCCCCCccccc
Confidence 55654 4456677764 3456789999999985433322 23321 1 1222 258999999999753 11 11111
Q ss_pred hcccccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhC--------CCceeEEEEcCCccchh
Q 004368 565 ENGKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--------PDLFKAAVAAVPFVDVL 633 (758)
Q Consensus 565 ~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--------p~~f~a~v~~~~~~d~~ 633 (758)
. ...+...+.|..+|++|+.++ ...||+||.|+|+|+||.+++.++... +.+|+++|+.+|.....
T Consensus 171 ~---~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~~~~~ 247 (534)
T 1llf_A 171 A---EGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGAMVPS 247 (534)
T ss_dssp H---HTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCCSCCC
T ss_pred c---cCCCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccCcccC
Confidence 1 123445689999999999775 346999999999999999887777653 56899999999843211
Q ss_pred hccCCCCCCCChhhh----hccCCCCCHHHHHHHHhcCcccccCCC-CC-------CeEEEeccCCCCCCCChHHHHHHH
Q 004368 634 TTMLDPTIPLTTAEW----EEWGDPWKEEFYFYMKSYSPVDNVKAQ-NY-------PHILVTAGLNDPRVMYSEPAKFVA 701 (758)
Q Consensus 634 ~~~~~~~~~~~~~~~----~e~g~p~~~~~~~~l~~~sp~~~i~~~-~~-------P~~Li~~G~~D~~V~~~~~~~~~~ 701 (758)
... ........+ ...|.+...+..+.|++.++...++.. +. +..+......|..+-+.++.++.+
T Consensus 248 ~~~---~~~~~~~~~~~~~~~~gc~~~~~~l~cLr~~~~~~l~~a~~~~~~~~~~~~~~~~f~P~~Dg~~l~~~p~~~~~ 324 (534)
T 1llf_A 248 DPV---DGTYGNEIYDLFVSSAGCGSASDKLACLRSASSDTLLDATNNTPGFLAYSSLRLSYLPRPDGKNITDDMYKLVR 324 (534)
T ss_dssp CCT---TSHHHHHHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHHHTSCCTTSTTTTSCSSCCCCCSSSSCSCHHHHHH
T ss_pred CCc---ChHHHHHHHHHHHHHhCCCCcHHHHHHHHcCCHHHHHHHHHhcccccccccccccceeecCCccccCCHHHHHH
Confidence 100 000000011 223544322445666766654322111 00 001223445577777788887766
Q ss_pred HHHhcCCCCceEEEEecCCCCCCC
Q 004368 702 KLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 702 ~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
+.+..++ ++++-...++||.+
T Consensus 325 ~g~~~~v---p~l~G~~~~Eg~~f 345 (534)
T 1llf_A 325 DGKYASV---PVIIGDQNDEGTIF 345 (534)
T ss_dssp TTCSCCC---CEEEEEETBTTHHH
T ss_pred cCCCCCC---CEEEEEecCchhhh
Confidence 5444443 34555566888753
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.2e-08 Score=116.67 Aligned_cols=243 Identities=11% Similarity=-0.001 Sum_probs=149.3
Q ss_pred CCCCEEEEEEeCCCCeEEEEEEEEC---CCC--c-ee-ecc--c-c--C--cceeEEEe-cCC-eEEEEEeCCCCCCceE
Q 004368 200 PDNKLVAYAEDTKGDEIYTVYVIDI---ETG--T-PV-GKP--L-V--G--VTASVEWA-GNE-ALVYITMDEILRPDKA 263 (758)
Q Consensus 200 PDG~~lAy~~~~~G~e~~~l~v~dl---~~g--~-~~-~~~--~-~--~--~~~~~~ws-pDg-~l~y~~~~~~~~~~~v 263 (758)
++|.++.|+....|.+...++..+. .++ + .+ .+. . + + ..+.+.|| ||| .|+|+....+...++|
T Consensus 124 ~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l 203 (751)
T 2xe4_A 124 VYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTI 203 (751)
T ss_dssp EETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEE
T ss_pred EECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEE
Confidence 7999999999888876677888886 443 2 22 221 1 1 1 24568999 999 8999987655556689
Q ss_pred EEEEcCCC-CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCc--ceEEEEEeCCCCC-ceEEeeccc-cc--eeeEE
Q 004368 264 WLHKLEAD-QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI--TRFVFYLDVSKPE-ELRVLTPRV-VG--VDTAA 336 (758)
Q Consensus 264 ~~~~l~~~-~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~--~~~l~~~d~~~~~-~~~~l~~~~-~~--~~~~~ 336 (758)
|+.++.++ ..-.. .++. ...++.|||||+.|++.+.... ..+||++++.++. .-+.+.... .. ....|
T Consensus 204 ~v~dl~~g~~~l~~-~~~~----~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~ 278 (751)
T 2xe4_A 204 EFKRISDPSQTIAD-KVSG----TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK 278 (751)
T ss_dssp EEEETTCTTCCCCC-CEEE----ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE
T ss_pred EEEECCCCCEeCCc-cccC----ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE
Confidence 99999887 41110 1111 1235789999999999876432 3589999998764 223443221 12 23459
Q ss_pred eecCCEEEEEEcCCCCCCcEEEEEeCCCCC-cc--eeeecCCCCceeeeEEEe---CCEEEEEEEeC--CeeEEEEEEcC
Q 004368 337 SHRGNHFFITRRSDELFNSELLACPVDNTS-ET--TVLIPHRESVKLQDIQLF---IDHLAVYEREG--GLQKITTYRLP 408 (758)
Q Consensus 337 s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~-~~--~~l~~~~~~~~~~~~~~~---~~~l~~~~~~~--g~~~l~v~~l~ 408 (758)
|+||++|++.++.. ...+|+.+|++++. .. +.+++.... ..++++ ++.+++....+ +..+|++++++
T Consensus 279 SpDg~~l~~~~~~~--~~~~l~~~d~~~~~~~~~~~~l~~~~~~---~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 279 AADTNTLCIGSQSP--ETAEVHLLDLRKGNAHNTLEIVRPREKG---VRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp CTTSSEEEEEEECS--SCEEEEEEESSSCTTCCCEEESSCCCTT---CCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred CCCCCEEEEEecCC--CCceEEEEECCCCCCCceeEEeecCCCC---ceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 99999999998754 36799999997642 22 334443322 134444 88888888765 55677777765
Q ss_pred CCCCccccccCCce-eeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEEC
Q 004368 409 AVGEPLKSLQGGKS-VEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDM 462 (758)
Q Consensus 409 ~~g~~~~~l~~~~~-i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~ 462 (758)
..+. . +. +.-......+. +.++.++.+++.+.. .....++.+|+
T Consensus 354 ~~~~-~------~~~li~~~~~~~l~--~~~~~~~~lv~~~~~-~g~~~l~~~dl 398 (751)
T 2xe4_A 354 QPSD-W------SHVLVDHSEDVFME--SIAVRSNYLVVAGRR-AGLTRIWTMMA 398 (751)
T ss_dssp STTC-C------CCEEECCCSSEEEE--EEEECSSEEEEEEEE-TTEEEEEEEEC
T ss_pred Cccc-c------eeeEECCCCCcEEE--EEEEECCEEEEEEEe-CCEEEEEEEec
Confidence 2111 1 11 11111111122 223446677666643 33467888886
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.5e-09 Score=109.00 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=76.1
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 573 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~ 573 (758)
.+|.++.... .+..|.||++||.++.... |......| ..||.|+.+|+||.|.+...- .......
T Consensus 12 ~~~~~~~~~~---------~g~g~~~vllHG~~~~~~~--w~~~~~~l-~~~~~vi~~Dl~G~G~s~~~~---~~~~~~~ 76 (291)
T 3qyj_A 12 TTEARINLVK---------AGHGAPLLLLHGYPQTHVM--WHKIAPLL-ANNFTVVATDLRGYGDSSRPA---SVPHHIN 76 (291)
T ss_dssp CSSCEEEEEE---------ECCSSEEEEECCTTCCGGG--GTTTHHHH-TTTSEEEEECCTTSTTSCCCC---CCGGGGG
T ss_pred cCCeEEEEEE---------cCCCCeEEEECCCCCCHHH--HHHHHHHH-hCCCEEEEEcCCCCCCCCCCC---CCccccc
Confidence 4677776541 1345789999997654433 44444444 579999999999998654310 0000011
Q ss_pred ChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 574 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 574 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
.+++++.+.+..+++.- ..+++.++|||+||.++..++.++|++++++|+..+
T Consensus 77 ~~~~~~~~~~~~~~~~l--~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 129 (291)
T 3qyj_A 77 YSKRVMAQDQVEVMSKL--GYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDI 129 (291)
T ss_dssp GSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred cCHHHHHHHHHHHHHHc--CCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECC
Confidence 23344444333333321 236899999999999999999999999999988653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.2e-08 Score=103.57 Aligned_cols=249 Identities=13% Similarity=0.088 Sum_probs=136.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCC-eEEEEEEEECCCCceeecc------ccCcceeEEEecCCeEEEEEeCCCCCCceEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGD-EIYTVYVIDIETGTPVGKP------LVGVTASVEWAGNEALVYITMDEILRPDKAW 264 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~-e~~~l~v~dl~~g~~~~~~------~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~ 264 (758)
.+..++|||||++||-..+.... ....|++++..+++..... -...+..++|+||+.++..+.+. .|.
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg-----~v~ 118 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSG-----AVE 118 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTS-----CEE
T ss_pred CEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCC-----EEE
Confidence 57889999999999976653321 1357999999887654321 12235668999999766544332 366
Q ss_pred EEEcCCCCCCcEEEeee-cCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCE
Q 004368 265 LHKLEADQSNDICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNH 342 (758)
Q Consensus 265 ~~~l~~~~~~~~~v~~~-~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~ 342 (758)
++++.++.......+.. ........+.|+|||++|+..+.+ ..|.++|+.+++....+......+.. .|+++++.
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD---FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT---SCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC---CeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 66776553211111111 122334578899999998765443 23677788876523333333333333 38888876
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCCCCCccccccCC
Q 004368 343 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGG 420 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~ 420 (758)
+++....+ ..|...|+.++.....+........+..+.+. ++.+++....++. +++|++.. ++.+
T Consensus 196 ~~~s~~~d----g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~--i~~wd~~~-~~~~------ 262 (357)
T 4g56_B 196 IFLSCGED----GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN--VSLVNIKN-PDSA------ 262 (357)
T ss_dssp CEEEEETT----SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC--EEEEESSC-GGGC------
T ss_pred eeeeeccC----CceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc--eeEEECCC-CcEe------
Confidence 66555544 35777787653322222222223344556654 3456666666664 77888863 3321
Q ss_pred ceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 421 KSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 421 ~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
..+......+..+.+++++..++++.+.- ..+..+|+.+++
T Consensus 263 --~~~~~~~~~v~~l~~sp~~~~~lasgs~D---~~i~iwd~~~~~ 303 (357)
T 4g56_B 263 --QTSAVHSQNITGLAYSYHSSPFLASISED---CTVAVLDADFSE 303 (357)
T ss_dssp --EEECCCSSCEEEEEECSSSSCCEEEEETT---SCEEEECTTSCE
T ss_pred --EEEeccceeEEEEEEcCCCCCEEEEEeCC---CEEEEEECCCCc
Confidence 11222222233345566776665555432 458888988876
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-08 Score=104.21 Aligned_cols=240 Identities=13% Similarity=0.061 Sum_probs=137.7
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccC------cceeEEEecCC-eEEEEEeC----CCC--
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG------VTASVEWAGNE-ALVYITMD----EIL-- 258 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~------~~~~~~wspDg-~l~y~~~~----~~~-- 258 (758)
...+.|||||++|+++....+ .|+++|+++++.+.. .... ....++|+||| .+++.... ...
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSE----SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTT----EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ccceEEcCCCCEEEEEeCCCC----eEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccc
Confidence 346799999999877765433 699999999987642 3322 34558999999 56555321 000
Q ss_pred -CCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc-ceeeEE
Q 004368 259 -RPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAA 336 (758)
Q Consensus 259 -~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~-~~~~~~ 336 (758)
....|+++++.++. ....+.... ....+.|+|||++|++. ...|+++|+.+++ .....+... .....+
T Consensus 112 ~~~~~i~v~d~~~~~--~~~~~~~~~--~~~~~~~s~dg~~l~~~-----~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~ 181 (337)
T 1pby_B 112 VQPTRVALYDAETLS--RRKAFEAPR--QITMLAWARDGSKLYGL-----GRDLHVMDPEAGT-LVEDKPIQSWEAETYA 181 (337)
T ss_dssp ECCCEEEEEETTTTE--EEEEEECCS--SCCCEEECTTSSCEEEE-----SSSEEEEETTTTE-EEEEECSTTTTTTTBC
T ss_pred ccCceEEEEECCCCc--EEEEEeCCC--CcceeEECCCCCEEEEe-----CCeEEEEECCCCc-EeeeeeccccCCCcee
Confidence 23568888987652 222332221 12356799999998886 2468999998876 332222111 112247
Q ss_pred eecCCEEEEEEcCCCC-------------------CCcEEEEEeCCCCCccee-eecCCCCceeeeEEEe--CCEEEEEE
Q 004368 337 SHRGNHFFITRRSDEL-------------------FNSELLACPVDNTSETTV-LIPHRESVKLQDIQLF--IDHLAVYE 394 (758)
Q Consensus 337 s~dg~~l~~~s~~~~~-------------------~~~~L~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~--~~~l~~~~ 394 (758)
+|||+.+++....++. ....|+.+|+.+...... +.+.. ..+..+.+. ++.+++.
T Consensus 182 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~- 258 (337)
T 1pby_B 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD--VFYFSTAVNPAKTRAFGA- 258 (337)
T ss_dssp CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS--SCEEEEEECTTSSEEEEE-
T ss_pred CCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCC--CceeeEEECCCCCEEEEe-
Confidence 8999877654332210 011578888875322211 21221 123345554 4466544
Q ss_pred EeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 395 REGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 395 ~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
+ ..+.+|++.. ++.+ ..+..+. .+....++++++.+++. + ....++.+|+.+++.
T Consensus 259 --~--~~v~~~d~~~-~~~~------~~~~~~~---~~~~~~~s~dg~~l~~~--~--~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 259 --Y--NVLESFDLEK-NASI------KRVPLPH---SYYSVNVSTDGSTVWLG--G--ALGDLAAYDAETLEK 313 (337)
T ss_dssp --E--SEEEEEETTT-TEEE------EEEECSS---CCCEEEECTTSCEEEEE--S--BSSEEEEEETTTCCE
T ss_pred --C--CeEEEEECCC-CcCc------ceecCCC---ceeeEEECCCCCEEEEE--c--CCCcEEEEECcCCcE
Confidence 2 4688898763 3221 1222211 22334567788777654 2 247899999988873
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-07 Score=98.65 Aligned_cols=252 Identities=14% Similarity=0.054 Sum_probs=129.1
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc---cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL---VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~---~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
..+.|||||+ |+++...++ ...|+++|+++|+.... .+ ......++|+|||+.+|+.... ...+.++++.
T Consensus 43 ~~~a~spdg~-l~~~~~~~~--~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~---~~~v~v~~~~ 116 (347)
T 3hfq_A 43 TYLALSAKDC-LYSVDKEDD--EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH---KGTAEVMKIA 116 (347)
T ss_dssp CCEEECTTCE-EEEEEEETT--EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT---TTEEEEEEEC
T ss_pred ceEEEccCCe-EEEEEecCC--CceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC---CCEEEEEEeC
Confidence 4679999999 544443222 46899999988875433 21 2224568999999544444322 1246666764
Q ss_pred CCCCCcEEEeeecC----------CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCC-CCCceEEeec--ccc--c-ee
Q 004368 270 ADQSNDICLYHEKD----------DIYSLGLQASESKKFLFIASESKITRFVFYLDVS-KPEELRVLTP--RVV--G-VD 333 (758)
Q Consensus 270 ~~~~~~~~v~~~~~----------~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~-~~~~~~~l~~--~~~--~-~~ 333 (758)
.... ...+..... ......+.|+|||+ +++..... ..|++++++ ++. +..+.. ... + ..
T Consensus 117 ~~g~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~--~~v~~~~~~~~g~-~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 117 ADGA-LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGS--DKVYVYNVSDAGQ-LSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp TTSC-EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTT--TEEEEEEECTTSC-EEEEEEEECCTTCCEEE
T ss_pred CCCC-eeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCC--CEEEEEEECCCCc-EEEeeeEEcCCCCCCce
Confidence 3321 122211111 01233578999999 66544332 356777776 444 332211 111 1 22
Q ss_pred eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCccee--eec-CCCC----ceeeeEEEe--CCEEEEEEEeCCeeEEEE
Q 004368 334 TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIP-HRES----VKLQDIQLF--IDHLAVYEREGGLQKITT 404 (758)
Q Consensus 334 ~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~--l~~-~~~~----~~~~~~~~~--~~~l~~~~~~~g~~~l~v 404 (758)
..|+|||+++|+....+ ....++.++..+ +.... .+. .... .....+.++ +++|++....++ .+.+
T Consensus 192 ~~~spdg~~l~v~~~~~--~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~--~v~v 266 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELS--SQIASLKYDTQT-GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN--TLAV 266 (347)
T ss_dssp EEECTTSSEEEEEETTT--TEEEEEEEETTT-TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT--EEEE
T ss_pred EEECCCCCEEEEEeCCC--CEEEEEEecCCC-CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC--EEEE
Confidence 35999999888776544 233444444322 22111 111 1111 224445555 456665554444 4778
Q ss_pred EEcCCCCCccccccCCcee-eccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEE
Q 004368 405 YRLPAVGEPLKSLQGGKSV-EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 469 (758)
Q Consensus 405 ~~l~~~g~~~~~l~~~~~i-~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~ 469 (758)
|+++.+|. + +.+ .++........+.++++++.+++.- ....--.+|.+|..+++.+.
T Consensus 267 ~~~~~~g~-~------~~~~~~~~~~~~~~~~~~spdg~~l~v~~-~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 267 FAVTADGH-L------TLIQQISTEGDFPRDFDLDPTEAFVVVVN-QNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEECGGGC-E------EEEEEEECSSSCCCEEEECTTSSEEEEEE-TTTTEEEEEEECTTTCCEEE
T ss_pred EEECCCCc-E------EEeEEEecCCCCcCeEEECCCCCEEEEEE-cCCCcEEEEEEeCCCCeEEe
Confidence 88864332 1 111 1121111223455677887665433 33333456666888887443
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-09 Score=112.14 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=69.0
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHH-cCcEEEEEecCCCCCCchhHHhcccccCCcCh----HhHHHHHHHHHHHc
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNT----FTDFIACAEYLIKN 589 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~----~~D~~~~~~~l~~~ 589 (758)
..|.||++||+.+.. ..|......|.+ .+|.|+.+|+||+|.+... .....+ .+|+.+.++.|..
T Consensus 37 ~~p~lvllHG~~~~~--~~w~~~~~~L~~~~~~~via~Dl~GhG~S~~~-------~~~~~~~~~~a~dl~~~l~~l~~- 106 (316)
T 3c5v_A 37 EGPVLLLLHGGGHSA--LSWAVFTAAIISRVQCRIVALDLRSHGETKVK-------NPEDLSAETMAKDVGNVVEAMYG- 106 (316)
T ss_dssp SSCEEEEECCTTCCG--GGGHHHHHHHHTTBCCEEEEECCTTSTTCBCS-------CTTCCCHHHHHHHHHHHHHHHHT-
T ss_pred CCcEEEEECCCCccc--ccHHHHHHHHhhcCCeEEEEecCCCCCCCCCC-------CccccCHHHHHHHHHHHHHHHhc-
Confidence 358899999965433 335555556655 2899999999999976431 011123 3455555555532
Q ss_pred CCCCCCcEEEEEeChhHHHHHHHHhh--CCCceeEEEEcCC
Q 004368 590 CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVP 628 (758)
Q Consensus 590 ~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~ 628 (758)
+ . ++++.++||||||.+++.++.+ +|+ ++++|+..+
T Consensus 107 ~-~-~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~ 144 (316)
T 3c5v_A 107 D-L-PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDV 144 (316)
T ss_dssp T-C-CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESC
T ss_pred c-C-CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEcc
Confidence 1 1 2689999999999999999885 577 888887665
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-07 Score=98.82 Aligned_cols=250 Identities=15% Similarity=0.093 Sum_probs=131.7
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECC--CCceeec-c--ccCcceeEEEecCCe-EEEEEeCCCCCCceEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE--TGTPVGK-P--LVGVTASVEWAGNEA-LVYITMDEILRPDKAWLH 266 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~--~g~~~~~-~--~~~~~~~~~wspDg~-l~y~~~~~~~~~~~v~~~ 266 (758)
+..+.|||||++|+++....+ .|.+++++ +|+.... . ..+....++|+|||. +++..... ..++++
T Consensus 40 ~~~~~~spdg~~l~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~i~~~ 111 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVRPEF----RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA----GNVSVT 111 (343)
T ss_dssp CCCEEECTTSSEEEEEETTTT----EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT----TEEEEE
T ss_pred CceEEECCCCCEEEEeecCCC----eEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCC----CeEEEE
Confidence 446799999999887766433 46666665 7765432 2 223455689999994 55444322 246666
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCC-CCceEEe-----ecc-ccce-eeEEee
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK-PEELRVL-----TPR-VVGV-DTAASH 338 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~-~~~~~~l-----~~~-~~~~-~~~~s~ 338 (758)
++..+. ....+...........+.|+|||++|++.... ...|+++|+.+ ++ +..+ ... .... ...|+|
T Consensus 112 d~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p 187 (343)
T 1ri6_A 112 RLEDGL-PVGVVDVVEGLDGCHSANISPDNRTLWVPALK--QDRICLFTVSDDGH-LVAQDPAEVTTVEGAGPRHMVFHP 187 (343)
T ss_dssp EEETTE-EEEEEEEECCCTTBCCCEECTTSSEEEEEEGG--GTEEEEEEECTTSC-EEEEEEEEEECSTTCCEEEEEECT
T ss_pred ECCCCc-cccccccccCCCCceEEEECCCCCEEEEecCC--CCEEEEEEecCCCc-eeeecccccccCCCCCcceEEECC
Confidence 664221 11112111111223357899999998876533 24577888776 54 3321 111 1112 234899
Q ss_pred cCCEEEEEEcCCCCCCcEEEEEeCCC-CCccee---e--ecCC--CCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcC
Q 004368 339 RGNHFFITRRSDELFNSELLACPVDN-TSETTV---L--IPHR--ESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 339 dg~~l~~~s~~~~~~~~~L~~~~~~~-~~~~~~---l--~~~~--~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+|+++|+....+ ..+..++++. .+.... + ++.. .......+.+. ++.+++....++ .+.+|+++
T Consensus 188 dg~~l~~~~~~~----~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~--~i~v~d~~ 261 (343)
T 1ri6_A 188 NEQYAYCVNELN----SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS--LITVFSVS 261 (343)
T ss_dssp TSSEEEEEETTT----TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT--EEEEEEEC
T ss_pred CCCEEEEEeCCC----CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC--EEEEEEEc
Confidence 999888776443 4566667642 111111 1 1211 11223345555 446655543344 57788887
Q ss_pred CCCCccccccCCceee-ccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEE
Q 004368 409 AVGEPLKSLQGGKSVE-FIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV 468 (758)
Q Consensus 409 ~~g~~~~~l~~~~~i~-~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~ 468 (758)
..++.. +.+. ++... .+..+.++++++.+++.. .....-.+|.+|..+++.+
T Consensus 262 ~~~~~~------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~-~~~~~v~v~~~d~~~g~~~ 314 (343)
T 1ri6_A 262 EDGSVL------SKEGFQPTET-QPRGFNVDHSGKYLIAAG-QKSHHISVYEIVGEQGLLH 314 (343)
T ss_dssp TTSCCE------EEEEEEECSS-SCCCEEECTTSSEEEEEC-TTTCEEEEEEEETTTTEEE
T ss_pred CCCCce------EEeeeecCCC-ccceEEECCCCCEEEEec-CCCCeEEEEEEcCCCceee
Confidence 433211 1111 12111 234456677787665433 2333345666687777643
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-09 Score=108.24 Aligned_cols=199 Identities=13% Similarity=0.083 Sum_probs=115.2
Q ss_pred CEEEEecCCCccCCCCCCChHHHHHHHcC---cEEEEEecCCCCC--CchhHHh--------cccccCC------cChHh
Q 004368 517 PLLLYGYGSYEICNDPAFNSSRLSLLDRG---FIFAIAQIRGGGE--LGRQWYE--------NGKFLKK------KNTFT 577 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G---~~v~~~~~RG~g~--~G~~~~~--------~~~~~~~------~~~~~ 577 (758)
+.||++||-.+.. ..|...+..|.++| +.|+.+++++.|. +...+.. -+...+. ....+
T Consensus 5 ~pvv~iHG~~~~~--~~~~~~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~a~ 82 (250)
T 3lp5_A 5 APVIMVPGSSASQ--NRFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQAV 82 (250)
T ss_dssp CCEEEECCCGGGH--HHHHHHHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHHHHHHH
T ss_pred CCEEEECCCCCCH--HHHHHHHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCHHHHHH
Confidence 3466789955543 23666777888877 6778777776663 1111110 0000110 11247
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC-----CCceeEEEEcCCccchhhccCCCCCCCChhhhhccC
Q 004368 578 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-----PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWG 652 (758)
Q Consensus 578 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-----p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g 652 (758)
++.++++.|.++.. -+++.++||||||.++...+.++ |+.++.+|+.++..+-... ..
T Consensus 83 ~l~~~~~~l~~~~~--~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~----~~----------- 145 (250)
T 3lp5_A 83 WLNTAFKALVKTYH--FNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMEST----ST----------- 145 (250)
T ss_dssp HHHHHHHHHHTTSC--CSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCC----CS-----------
T ss_pred HHHHHHHHHHHHcC--CCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCcccc----cc-----------
Confidence 77888888877643 37999999999999999988876 6678888877665442211 00
Q ss_pred CCCCHHHHHHHHhcCcccccCCCCCCeEEEeccC----CCCCCCChHHHHHHHHHHhcCCCCceEEEEec-CCCCCCCCC
Q 004368 653 DPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGL----NDPRVMYSEPAKFVAKLREMKTDDNILLFKCE-LGAGHFSKS 727 (758)
Q Consensus 653 ~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~----~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~-~~~gH~~~~ 727 (758)
......|+.|... ...+.+ ++| +|+|+|. +|..||+..++.+...++..... ...+... .+++|....
T Consensus 146 -~~~~~~~~~l~~~--~~~lp~-~vp-vl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~~~~~~--~~~~~v~g~~a~H~~l~ 218 (250)
T 3lp5_A 146 -TAKTSMFKELYRY--RTGLPE-SLT-VYSIAGTENYTSDGTVPYNSVNYGKYIFQDQVKH--FTEITVTGANTAHSDLP 218 (250)
T ss_dssp -SCCCHHHHHHHHT--GGGSCT-TCE-EEEEECCCCCCTTTBCCHHHHTTHHHHHTTTSSE--EEEEECTTTTBSSCCHH
T ss_pred -cccCHHHHHHHhc--cccCCC-Cce-EEEEEecCCCCCCceeeHHHHHHHHHHhcccccc--eEEEEEeCCCCchhcch
Confidence 0111234444322 122222 566 9999999 99999988887766666543322 2223322 356797543
Q ss_pred ChHHHHHHHHHHHHHHH
Q 004368 728 GRFERLREAAFTYTFLM 744 (758)
Q Consensus 728 ~~~~~~~~~~~~~~fl~ 744 (758)
...+ -...+.+||.
T Consensus 219 e~~~---v~~~I~~FL~ 232 (250)
T 3lp5_A 219 QNKQ---IVSLIRQYLL 232 (250)
T ss_dssp HHHH---HHHHHHHHTS
T ss_pred hCHH---HHHHHHHHHh
Confidence 3222 2222456664
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=121.83 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=90.4
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCC-CCChHHHHHHHcC-cEEEEEecCC----CCCCchhHHhc
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNSSRLSLLDRG-FIFAIAQIRG----GGELGRQWYEN 566 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~~~~l~~~G-~~v~~~~~RG----~g~~G~~~~~~ 566 (758)
+.|+..+. ++.|+. .+++.|+||++|||....... ........|+++| ++|+.+|||. .+..+.... .
T Consensus 81 ~edcl~l~--v~~P~~---~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~~~-~ 154 (498)
T 2ogt_A 81 SEDGLYLN--IWSPAA---DGKKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDSFG-E 154 (498)
T ss_dssp BSCCCEEE--EEESCS---SSCCEEEEEEECCSTTTSCCTTCGGGCCHHHHHHHTCEEEEECCCCHHHHCCCCTTTTC-G
T ss_pred CCCCcEEE--EEecCC---CCCCCcEEEEEcCCccCCCCCCCCcCCHHHHHhCCCEEEEeCCCcCchhhccCchhhcc-c
Confidence 56775554 455653 245789999999986332221 1112246788776 9999999993 332221100 0
Q ss_pred ccccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhC--CCceeEEEEcCCccc
Q 004368 567 GKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFVD 631 (758)
Q Consensus 567 ~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~~d 631 (758)
.....+...+.|..++++|+.++ ...|+++|.|+|+|+||.+++.++... ..+|+++|+.+|..+
T Consensus 155 ~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~ 224 (498)
T 2ogt_A 155 AYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGS 224 (498)
T ss_dssp GGTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred cccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCcc
Confidence 01122334579999999999876 236999999999999999998887753 468999999999765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.3e-08 Score=102.95 Aligned_cols=237 Identities=10% Similarity=0.011 Sum_probs=133.4
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec---cc---cCcceeEEEecCCeEEEEEeCCCCCCceEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PL---VGVTASVEWAGNEALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~---~~---~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~ 266 (758)
+..+.||||++.+ .. ..+| .|+|||+++++.... .. .+.+..++|+|||.++++...+. .|.++
T Consensus 85 v~~~~~s~d~~l~-~~-s~dg----~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~----~i~iw 154 (344)
T 4gqb_B 85 VADLTWVGERGIL-VA-SDSG----AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI----CIKVW 154 (344)
T ss_dssp EEEEEEETTTEEE-EE-ETTS----EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS----CEEEE
T ss_pred EEEEEEeCCCeEE-EE-ECCC----EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC----eEEEE
Confidence 6788999997644 33 2333 699999999875432 11 22356799999995445544332 37788
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc--e-eeEEeecCCEE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG--V-DTAASHRGNHF 343 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~--~-~~~~s~dg~~l 343 (758)
++.++ +....+.... .....+.|++|++.++++....+ .|.++|+.+++....+.....+ + ...|+|++..+
T Consensus 155 d~~~~--~~~~~~~~h~-~~V~~~~~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 229 (344)
T 4gqb_B 155 DLAQQ--VVLSSYRAHA-AQVTCVAASPHKDSVFLSCSEDN--RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV 229 (344)
T ss_dssp ETTTT--EEEEEECCCS-SCEEEEEECSSCTTEEEEEETTS--CEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE
T ss_pred ECCCC--cEEEEEcCcC-CceEEEEecCCCCCceeeecccc--ccccccccccceeeeeecceeeccceeeeecCCCCcc
Confidence 88776 3333443322 23446789999987666554433 4667788877633333222221 2 23478877666
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCc
Q 004368 344 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGK 421 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~ 421 (758)
++....+ ..|..+|+.+......+..+.. .+..+.+. +..+++....++. +++|++.. + +
T Consensus 230 l~sg~~d----g~v~~wd~~~~~~~~~~~~h~~--~v~~v~fsp~g~~~lasgs~D~~--i~vwd~~~--~--------~ 291 (344)
T 4gqb_B 230 FVFGDEN----GTVSLVDTKSTSCVLSSAVHSQ--CVTGLVFSPHSVPFLASLSEDCS--LAVLDSSL--S--------E 291 (344)
T ss_dssp EEEEETT----SEEEEEESCC--CCEEEECCSS--CEEEEEECSSSSCCEEEEETTSC--EEEECTTC--C--------E
T ss_pred eEEeccC----CcEEEEECCCCcEEEEEcCCCC--CEEEEEEccCCCeEEEEEeCCCe--EEEEECCC--C--------c
Confidence 5554443 4677778865332233444433 34455554 4456667777775 67887762 2 2
Q ss_pred eeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCC
Q 004368 422 SVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMG 465 (758)
Q Consensus 422 ~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~ 465 (758)
.+.+..+...|..+.+++++..++.+.+.- .+|..+++.+.
T Consensus 292 ~~~~~~H~~~V~~v~~sp~~~~llas~s~D---~~v~~w~v~~~ 332 (344)
T 4gqb_B 292 LFRSQAHRDFVRDATWSPLNHSLLTTVGWD---HQVVHHVVPTE 332 (344)
T ss_dssp EEEECCCSSCEEEEEECSSSTTEEEEEETT---SCEEEEECCC-
T ss_pred EEEEcCCCCCEEEEEEeCCCCeEEEEEcCC---CeEEEEECCCC
Confidence 222323322344455667777665554422 34666666543
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3e-09 Score=106.91 Aligned_cols=92 Identities=13% Similarity=0.109 Sum_probs=63.6
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHc-CCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN-CYC 592 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~ 592 (758)
++.|.||++||..+... .|......| ..+|.|+.+|.||+|.... ...+|+.+.++.+.+. +..
T Consensus 11 ~~~~~lv~lhg~g~~~~--~~~~~~~~L-~~~~~vi~~Dl~GhG~S~~------------~~~~~~~~~~~~~~~~l~~~ 75 (242)
T 2k2q_B 11 SEKTQLICFPFAGGYSA--SFRPLHAFL-QGECEMLAAEPPGHGTNQT------------SAIEDLEELTDLYKQELNLR 75 (242)
T ss_dssp TCCCEEESSCCCCHHHH--HHHHHHHHH-CCSCCCEEEECCSSCCSCC------------CTTTHHHHHHHHTTTTCCCC
T ss_pred CCCceEEEECCCCCCHH--HHHHHHHhC-CCCeEEEEEeCCCCCCCCC------------CCcCCHHHHHHHHHHHHHhh
Confidence 34578899999765432 244444444 4579999999999987632 1235777777766543 222
Q ss_pred CCCcEEEEEeChhHHHHHHHHhh------CCCce
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNM------RPDLF 620 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~------~p~~f 620 (758)
..+++.++|||+||.++..++.+ +|+.+
T Consensus 76 ~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v 109 (242)
T 2k2q_B 76 PDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAV 109 (242)
T ss_dssp CCSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSE
T ss_pred cCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEE
Confidence 23689999999999999988876 57753
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-06 Score=92.38 Aligned_cols=255 Identities=11% Similarity=0.072 Sum_probs=127.0
Q ss_pred eeEEECCCCCEEEEEEeCC-CCeEEEEEEEECCCCceeec-ccc--C-cceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 194 GCFQVSPDNKLVAYAEDTK-GDEIYTVYVIDIETGTPVGK-PLV--G-VTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~-G~e~~~l~v~dl~~g~~~~~-~~~--~-~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
..+.|||||++|+++...+ +.....+|.++.++|+.... ... + ....+++ ||+.+|+.... ...+..+++
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~---~~~v~~~~~ 127 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYS---GGSITVFPI 127 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETT---TTEEEEEEB
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECC---CCEEEEEEe
Confidence 4568999999987776532 22245566666666765543 222 1 1223445 88544554422 234777777
Q ss_pred CCCCCCc---EEE-eeecCC-------ceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCC----Cce------EEe-e
Q 004368 269 EADQSND---ICL-YHEKDD-------IYSLGLQASESKKFLFIASESKITRFVFYLDVSKP----EEL------RVL-T 326 (758)
Q Consensus 269 ~~~~~~~---~~v-~~~~~~-------~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~----~~~------~~l-~ 326 (758)
.+...-. ..+ .....+ .....+.|+|||++|++.....+.-.+|.++..++ +.+ ..+ .
T Consensus 128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (361)
T 3scy_A 128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV 207 (361)
T ss_dssp CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence 6432110 111 111110 11235789999999988665444445555555443 101 111 1
Q ss_pred ccccc-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCccee---eec-CCCCceeeeEEEe--CCEEEEEEEeCCe
Q 004368 327 PRVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV---LIP-HRESVKLQDIQLF--IDHLAVYEREGGL 399 (758)
Q Consensus 327 ~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~---l~~-~~~~~~~~~~~~~--~~~l~~~~~~~g~ 399 (758)
....+ ....|+|||+++|+....+ ..|.++++++ +.... +.. .........+.+. +++|++..+. +.
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~----~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~~ 281 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIG----GTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-KA 281 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTT----CEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-SS
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCC----CeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-CC
Confidence 11112 2335999999888776443 3466666543 22211 111 1111122355554 4566544333 13
Q ss_pred eEEEEEEcCCCCCccccccCCceee-ccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 400 QKITTYRLPAVGEPLKSLQGGKSVE-FIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 400 ~~l~v~~l~~~g~~~~~l~~~~~i~-~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
..+.+|+++..++.++ .+. ++. ......+.++++++.+++.. ....--.+|.+|.++++.
T Consensus 282 ~~i~v~~~~~~~g~~~------~~~~~~~-g~~~~~~~~spdg~~l~~~~-~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 282 DGVAIFKVDETNGTLT------KVGYQLT-GIHPRNFIITPNGKYLLVAC-RDTNVIQIFERDQATGLL 342 (361)
T ss_dssp CEEEEEEECTTTCCEE------EEEEEEC-SSCCCEEEECTTSCEEEEEE-TTTTEEEEEEECTTTCCE
T ss_pred CEEEEEEEcCCCCcEE------EeeEecC-CCCCceEEECCCCCEEEEEE-CCCCCEEEEEEECCCCcE
Confidence 4578888863222211 111 111 11223455678887665443 233334567788888873
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=7.4e-10 Score=124.93 Aligned_cols=132 Identities=15% Similarity=0.089 Sum_probs=89.2
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCC-ChHHHHHHH-cCcEEEEEecCCC-CCCchhHHhcccc
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF-NSSRLSLLD-RGFIFAIAQIRGG-GELGRQWYENGKF 569 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~-~~~~~~l~~-~G~~v~~~~~RG~-g~~G~~~~~~~~~ 569 (758)
+.|...+. ++.|+.. .+++.|+||++|||......... ......|++ +|++|+.+|||.+ -+++... ....
T Consensus 93 ~edcl~l~--v~~P~~~--~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~g~vvv~~nYRlg~~Gf~~~~--~~~~ 166 (543)
T 2ha2_A 93 SEDCLYLN--VWTPYPR--PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALP--GSRE 166 (543)
T ss_dssp ESCCCEEE--EEEESSC--CSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCSS
T ss_pred CCcCCeEE--EeecCCC--CCCCCeEEEEECCCccccCCCCCCcCChHHHHhcCCEEEEEecccccccccccCC--CCCC
Confidence 56775554 4567543 34567999999998543322211 122356665 7999999999943 1111110 0011
Q ss_pred cCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhC--CCceeEEEEcCCcc
Q 004368 570 LKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFV 630 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~~ 630 (758)
..+...+.|..+|++|+.++ -..||+||.|+|+|+||.+++.++... +.+|+++|+.+|..
T Consensus 167 ~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 167 APGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp CCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 22334679999999999876 236999999999999999998877753 46999999999853
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.2e-07 Score=96.52 Aligned_cols=249 Identities=12% Similarity=0.072 Sum_probs=138.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCe-EEEEEEEECCCCceee-c-----cccCcceeEEEecCCeEEEEEeCCCCCCceEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDE-IYTVYVIDIETGTPVG-K-----PLVGVTASVEWAGNEALVYITMDEILRPDKAW 264 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e-~~~l~v~dl~~g~~~~-~-----~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~ 264 (758)
.+..++|||||++|+-..+..+.- ...+++++........ . ..+.....++|+||+.|+..+.+. .|.
T Consensus 32 ~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg-----~v~ 106 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSG-----AVE 106 (344)
T ss_dssp EEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTS-----EEE
T ss_pred CEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCC-----EEE
Confidence 477889999999998766543321 1344555432211111 0 112224568999998776443332 477
Q ss_pred EEEcCCCCCCcEEEee-ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCE
Q 004368 265 LHKLEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNH 342 (758)
Q Consensus 265 ~~~l~~~~~~~~~v~~-~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~ 342 (758)
++++.+++......+. .........++|+|||++|+..+.+. .|.++|+.+++....+......+.. .|++++..
T Consensus 107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~---~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 107 LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI---CIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC---eEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 7788776432222221 12233345788999999987655433 3677898877633344434444433 48899876
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCCCCCccccccCC
Q 004368 343 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGG 420 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~ 420 (758)
+++....+ ..|...|+.+......+........+..+.+. +..+++....++. +++|++.. ++.+
T Consensus 184 ~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~--v~~wd~~~-~~~~------ 250 (344)
T 4gqb_B 184 VFLSCSED----NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT--VSLVDTKS-TSCV------ 250 (344)
T ss_dssp EEEEEETT----SCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE--EEEEESCC---CC------
T ss_pred ceeeeccc----cccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc--EEEEECCC-CcEE------
Confidence 66655544 35777788663332223222223334455554 3456666677775 77888874 3322
Q ss_pred ceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 421 KSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 421 ~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
..+..+...|..+.+++++..++++.+.- ..+..+|..+++
T Consensus 251 --~~~~~h~~~v~~v~fsp~g~~~lasgs~D---~~i~vwd~~~~~ 291 (344)
T 4gqb_B 251 --LSSAVHSQCVTGLVFSPHSVPFLASLSED---CSLAVLDSSLSE 291 (344)
T ss_dssp --EEEECCSSCEEEEEECSSSSCCEEEEETT---SCEEEECTTCCE
T ss_pred --EEEcCCCCCEEEEEEccCCCeEEEEEeCC---CeEEEEECCCCc
Confidence 12222222333445667776665555432 358888988876
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-09 Score=118.39 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=81.1
Q ss_pred CCCCEEEEecCCCccCCCCCCCh-HHHHHHH-cCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNS-SRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 591 (758)
...|+||++||..+.. ...|.. ....|++ .||.|+++|.||+|..... ... ..-....+|+.+.+++|.++..
T Consensus 68 ~~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~g~s~~~--~~~--~~~~~~~~dl~~~i~~l~~~~g 142 (432)
T 1gpl_A 68 LNRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQYS--QAS--QNIRVVGAEVAYLVQVLSTSLN 142 (432)
T ss_dssp TTSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHHHHTSCHH--HHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECccccCccch--hhH--hhHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999965443 223444 4556776 7999999999998765421 110 1112234678888888876544
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
++.+++.++|||+||.+++.++.++|++++++++..|.
T Consensus 143 ~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa 180 (432)
T 1gpl_A 143 YAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPA 180 (432)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCB
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccccceeEEeccc
Confidence 56799999999999999999999999999999887765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-07 Score=100.79 Aligned_cols=203 Identities=17% Similarity=0.148 Sum_probs=108.9
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECC-CCceeec-cc--cC----------cceeEEEecCCeEEEEEeCCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE-TGTPVGK-PL--VG----------VTASVEWAGNEALVYITMDEIL 258 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~-~g~~~~~-~~--~~----------~~~~~~wspDg~l~y~~~~~~~ 258 (758)
...+.|||||++|+++...+| .|.++++. +|..... .+ .+ ....++|+|||+ +|+.....
T Consensus 88 p~~~a~spdg~~l~~~~~~~~----~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~- 161 (347)
T 3hfq_A 88 PAYVAVDEARQLVYSANYHKG----TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGS- 161 (347)
T ss_dssp CSEEEEETTTTEEEEEETTTT----EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTT-
T ss_pred CEEEEECCCCCEEEEEeCCCC----EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCC-
Confidence 346789999999877764444 57778874 4443321 11 11 133489999999 55544322
Q ss_pred CCceEEEEEcCCCCCCcEEEe--eecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEee---cccc---
Q 004368 259 RPDKAWLHKLEADQSNDICLY--HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT---PRVV--- 330 (758)
Q Consensus 259 ~~~~v~~~~l~~~~~~~~~v~--~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~---~~~~--- 330 (758)
..|+++++.... +...+. ..........+.|+|||++|++.....+.-.+|.++..+++ +..+. ....
T Consensus 162 --~~v~~~~~~~~g-~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~-~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 162 --DKVYVYNVSDAG-QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA-FTQLGIVKTIPADYT 237 (347)
T ss_dssp --TEEEEEEECTTS-CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-EEEEEEEESSCTTCC
T ss_pred --CEEEEEEECCCC-cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-eEEeeeeeecCCCCC
Confidence 357777877321 111111 11111122357899999998886655554556666654454 33221 1111
Q ss_pred ---ce-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCccee--eecCCCCceeeeEEEe--CCEEEEEEEeCCeeEE
Q 004368 331 ---GV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKI 402 (758)
Q Consensus 331 ---~~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l 402 (758)
.. ...|+|||++||+....+ ..|.+++++..+.... .++.. ...+..+.++ +++|++....++ .+
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~~~----~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~--~v 310 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNRGY----NTLAVFAVTADGHLTLIQQISTE-GDFPRDFDLDPTEAFVVVVNQNTD--NA 310 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEETT----TEEEEEEECGGGCEEEEEEEECS-SSCCCEEEECTTSSEEEEEETTTT--EE
T ss_pred CCCcceeEEECCCCCEEEEEeCCC----CEEEEEEECCCCcEEEeEEEecC-CCCcCeEEECCCCCEEEEEEcCCC--cE
Confidence 11 234999999888765543 3466666542122222 22221 1123455555 456665544444 47
Q ss_pred EEEEcCCCCC
Q 004368 403 TTYRLPAVGE 412 (758)
Q Consensus 403 ~v~~l~~~g~ 412 (758)
.+|+++..++
T Consensus 311 ~v~~~d~~tg 320 (347)
T 3hfq_A 311 TLYARDLTSG 320 (347)
T ss_dssp EEEEECTTTC
T ss_pred EEEEEeCCCC
Confidence 7787765433
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=98.90 E-value=5.9e-09 Score=108.66 Aligned_cols=205 Identities=12% Similarity=0.101 Sum_probs=114.2
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHH-HHHHcCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAE-YLIKNCYC 592 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~ 592 (758)
+..|.||++||..+......|......| ..+|.|+.+|+||.|.... ...+++++.+.+. .+.+. .
T Consensus 65 ~~~~~lvllhG~~~~~~~~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~----------~~~~~~~~a~~~~~~l~~~--~ 131 (300)
T 1kez_A 65 PGEVTVICCAGTAAISGPHEFTRLAGAL-RGIAPVRAVPQPGYEEGEP----------LPSSMAAVAAVQADAVIRT--Q 131 (300)
T ss_dssp SCSSEEEECCCSSTTCSTTTTHHHHHHT-SSSCCBCCCCCTTSSTTCC----------BCSSHHHHHHHHHHHHHHH--C
T ss_pred CCCCeEEEECCCcccCcHHHHHHHHHhc-CCCceEEEecCCCCCCCCC----------CCCCHHHHHHHHHHHHHHh--c
Confidence 4578999999966543223454444444 4579999999999886321 1235566665543 44443 2
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhCC---CceeEEEEcCCccchhhccCCCCCCCChhhhhcc-CC---CCCHHHH----H
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW-GD---PWKEEFY----F 661 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~-g~---p~~~~~~----~ 661 (758)
+.+++.++|+|+||.++..++.++| +.++++|+..+.......... . +.......+ .. +...... .
T Consensus 132 ~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (300)
T 1kez_A 132 GDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMN-A--WLEELTATLFDRETVRMDDTRLTALGA 208 (300)
T ss_dssp SSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHHHH-H--HHHHHHGGGCCCCSSCCCHHHHHHHHH
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhHHH-H--HHHHHHHHHHhCcCCccchHHHHHHHH
Confidence 3478999999999999999999988 489999988875432110000 0 000000000 01 1111111 1
Q ss_pred HHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhc-CCCCceEEEEecCCCCCCCCC-ChHHHHHHHHHH
Q 004368 662 YMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREM-KTDDNILLFKCELGAGHFSKS-GRFERLREAAFT 739 (758)
Q Consensus 662 ~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~ 739 (758)
++.....+ ...++++| +|+++| .|+.+++.+ .. +.+. ....+++.++ + ||.... .....+.+. +
T Consensus 209 ~~~~~~~~-~~~~i~~P-~lii~G-~d~~~~~~~-~~----~~~~~~~~~~~~~i~---g-gH~~~~~e~~~~~~~~--i 274 (300)
T 1kez_A 209 YDRLTGQW-RPRETGLP-TLLVSA-GEPMGPWPD-DS----WKPTWPFEHDTVAVP---G-DHFTMVQEHADAIARH--I 274 (300)
T ss_dssp HHHHTTTC-CCCCCSCC-BEEEEE-SSCSSCCCS-SC----CSCCCSSCCEEEEES---S-CTTTSSSSCSHHHHHH--H
T ss_pred HHHHHhcC-CCCCCCCC-EEEEEe-CCCCCCCcc-cc----hhhhcCCCCeEEEec---C-CChhhccccHHHHHHH--H
Confidence 11111111 23566888 999999 577777655 22 2222 1234566665 6 998653 434434332 5
Q ss_pred HHHHHHhcC
Q 004368 740 YTFLMRALS 748 (758)
Q Consensus 740 ~~fl~~~l~ 748 (758)
.+||.+...
T Consensus 275 ~~fl~~~~~ 283 (300)
T 1kez_A 275 DAWLGGGNS 283 (300)
T ss_dssp HHHHTCC--
T ss_pred HHHHHhccC
Confidence 678765543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-07 Score=100.18 Aligned_cols=243 Identities=15% Similarity=0.101 Sum_probs=144.6
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc------cCcceeEEEecCCeEEEEEeCCCCCCceEEEE
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL------VGVTASVEWAGNEALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~------~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~ 266 (758)
..+.||| ++.++++...+| .|+++|+++|+.... .. .+....++|+|||.++++...+ ..|+++
T Consensus 126 ~~~~~s~-~~~~~~~~~~~~----~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d----~~v~~~ 196 (433)
T 3bws_A 126 KSVRFID-NTRLAIPLLEDE----GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA----NAVHVF 196 (433)
T ss_dssp CCCEESS-SSEEEEEBTTSS----SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG----TEEEEE
T ss_pred eEEEEeC-CCeEEEEeCCCC----eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC----CEEEEE
Confidence 3678999 555555554443 599999999987652 11 1134568999999777776532 358888
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFI 345 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~ 345 (758)
++.++. ....+.. .......+.|+|||+++++.... ...|+++|+.+++ ............ ..|+|+|+.+++
T Consensus 197 d~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 197 DLKTLA--YKATVDL-TGKWSKILLYDPIRDLVYCSNWI--SEDISVIDRKTKL-EIRKTDKIGLPRGLLLSKDGKELYI 270 (433)
T ss_dssp ETTTCC--EEEEEEC-SSSSEEEEEEETTTTEEEEEETT--TTEEEEEETTTTE-EEEECCCCSEEEEEEECTTSSEEEE
T ss_pred ECCCce--EEEEEcC-CCCCeeEEEEcCCCCEEEEEecC--CCcEEEEECCCCc-EEEEecCCCCceEEEEcCCCCEEEE
Confidence 987652 2333332 22234467899999998776533 2468999998765 333222222222 348999998888
Q ss_pred EEcCCCC---CCcEEEEEeCCCCCcceeeecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCCCCCccccccCC
Q 004368 346 TRRSDEL---FNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGG 420 (758)
Q Consensus 346 ~s~~~~~---~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~ 420 (758)
.....+. .+..|+.+|+.+. .....+.... .+..+.+. ++.+++....++ .+.+|++.. ++..
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~-~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~--~v~v~d~~~-~~~~------ 338 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKE-KLIDTIGPPG--NKRHIVSGNTENKIYVSDMCCS--KIEVYDLKE-KKVQ------ 338 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTT-EEEEEEEEEE--CEEEEEECSSTTEEEEEETTTT--EEEEEETTT-TEEE------
T ss_pred EECCCCccccCCCeEEEEECCCC-cEEeeccCCC--CcceEEECCCCCEEEEEecCCC--EEEEEECCC-CcEE------
Confidence 7753311 2468999998753 2222332221 23344444 456776655555 478898873 3211
Q ss_pred ceeeccCcccccCCCCcccCCcEEEEEEecCCCC-----------CEEEEEECCCCc
Q 004368 421 KSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTP-----------PSVYDYDMDMGI 466 (758)
Q Consensus 421 ~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P-----------~~i~~~d~~~~~ 466 (758)
..+.... .+..+.++++++.+++.......+ ..++.+|+.+++
T Consensus 339 ~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 339 KSIPVFD---KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEECSS---SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEecCCC---CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 1122111 122345567777776655433322 489999998887
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.5e-07 Score=98.75 Aligned_cols=249 Identities=8% Similarity=0.061 Sum_probs=141.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECC--CCceeec----cccCcceeEEEecCCeEEEEEeCCCCCCceEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE--TGTPVGK----PLVGVTASVEWAGNEALVYITMDEILRPDKAWL 265 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~--~g~~~~~----~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~ 265 (758)
.+..+.|||||++|+++...+| .|+|||+. +++.+.. ........++|+|||.++++.... ..++.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~----g~v~~ 175 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDK----SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF----GDVYS 175 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGT----EEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT----SEEEE
T ss_pred ceEEEEEcCCCCEEEEEECCCC----eEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC----CcEEE
Confidence 4778899999999877765555 58899988 7766543 112335679999999444444322 25888
Q ss_pred EEcCCCCCCc--EEEeeecCCceeeEEEEcCC---CcEEEEEecCCcceEEEEEeCCCCCceEE-eecccccee-eEEee
Q 004368 266 HKLEADQSND--ICLYHEKDDIYSLGLQASES---KKFLFIASESKITRFVFYLDVSKPEELRV-LTPRVVGVD-TAASH 338 (758)
Q Consensus 266 ~~l~~~~~~~--~~v~~~~~~~~~~~~~~S~D---g~~l~~~s~~~~~~~l~~~d~~~~~~~~~-l~~~~~~~~-~~~s~ 338 (758)
+++.++.... ...+... ......+.|+|| +++|+..+.+ ..|+++|+.++..... +......+. ..|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s- 250 (450)
T 2vdu_B 176 IDINSIPEEKFTQEPILGH-VSMLTDVHLIKDSDGHQFIITSDRD---EHIKISHYPQCFIVDKWLFGHKHFVSSICCG- 250 (450)
T ss_dssp EETTSCCCSSCCCCCSEEC-SSCEEEEEEEECTTSCEEEEEEETT---SCEEEEEESCTTCEEEECCCCSSCEEEEEEC-
T ss_pred EecCCcccccccceeeecc-cCceEEEEEcCCCCCCcEEEEEcCC---CcEEEEECCCCceeeeeecCCCCceEEEEEC-
Confidence 8887654321 1122222 223446789999 8887765443 3467777776652333 323333333 3488
Q ss_pred cCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecC-----------------------CCCceeeeEEEeC--CEEEEE
Q 004368 339 RGNHFFITRRSDELFNSELLACPVDNTSETTVLIPH-----------------------RESVKLQDIQLFI--DHLAVY 393 (758)
Q Consensus 339 dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~-----------------------~~~~~~~~~~~~~--~~l~~~ 393 (758)
+|+.|+..+.+ ..|..+|+.+......+... .....+..+.+.. +.+++.
T Consensus 251 d~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 325 (450)
T 2vdu_B 251 KDYLLLSAGGD-----DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF 325 (450)
T ss_dssp STTEEEEEESS-----SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence 88877765532 46777887653222112100 1123345566654 455444
Q ss_pred EEeCCeeEEEEEEc-CCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCC------EEEEEECCCCc
Q 004368 394 EREGGLQKITTYRL-PAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPP------SVYDYDMDMGI 466 (758)
Q Consensus 394 ~~~~g~~~l~v~~l-~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~------~i~~~d~~~~~ 466 (758)
...++ .+.+|++ +..+..+.. ...+... ..+..+.+++ +.++++..+...|. .+|.++..+++
T Consensus 326 ~~~d~--~i~iw~~~~~~~~~l~~---~~~~~~~---~~v~~~~~~~--~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~ 395 (450)
T 2vdu_B 326 VEATK--CIIILEMSEKQKGDLAL---KQIITFP---YNVISLSAHN--DEFQVTLDNKESSGVQKNFAKFIEYNLNENS 395 (450)
T ss_dssp ETTCS--EEEEEEECSSSTTCEEE---EEEEECS---SCEEEEEEET--TEEEEEECCTTCCSSCCCSEEEEEEETTTTE
T ss_pred ECCCC--eEEEEEeccCCCCceee---ccEeccC---CceEEEEecC--CcEEEEEecccCCCCCCcceEEEEEEcCCCe
Confidence 32444 5888998 222321111 0122222 1232333444 46778888887776 89999988877
Q ss_pred EE
Q 004368 467 SV 468 (758)
Q Consensus 467 ~~ 468 (758)
.+
T Consensus 396 ~~ 397 (450)
T 2vdu_B 396 FV 397 (450)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-06 Score=91.61 Aligned_cols=236 Identities=11% Similarity=0.042 Sum_probs=137.9
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec--c-----ccCcceeEEEecCC-eEEEEEeCCCCCCceE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--P-----LVGVTASVEWAGNE-ALVYITMDEILRPDKA 263 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~-----~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v 263 (758)
.+..+.|||||++|+... + ..|++||+.+++.... . .......++|+||+ .++....+ ..+
T Consensus 53 ~v~~~~~~~~~~~l~~~~--d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i 121 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG--K----GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STL 121 (337)
T ss_dssp CCCEEEECSSSSEEEEEC--B----SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEE
T ss_pred ceEEEEEecCCcEEEEcC--C----CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-----CcE
Confidence 366789999999998765 2 3699999988764321 1 12235668999999 45544332 258
Q ss_pred EEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCE
Q 004368 264 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNH 342 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~ 342 (758)
.++++.++.......+.... .....+.|+||+++|+..+.+ ..|+++|+.+++....+......+. ..|+|+|+.
T Consensus 122 ~~~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d---g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 122 SIWDLAAPTPRIKAELTSSA-PACYALAISPDSKVCFSCCSD---GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp EEEECCCC--EEEEEEECSS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEECCCCCcceeeecccCC-CceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCceeeeeecccCceEEEEECCCCCE
Confidence 88888776322222333222 233467899999998876543 3478889887652333333333333 348999988
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC--CEEEEEEEeCCeeEEEEEEcCCCCCccccccCC
Q 004368 343 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGG 420 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~ 420 (758)
|+..+.. ..|..+|+.+. .....+.... .+..+.+.. +.++ ....++. +.+|++.. ..
T Consensus 198 l~~~~~d-----g~i~~~d~~~~-~~~~~~~~~~--~v~~~~~s~~~~~l~-~~~~~~~--i~~~~~~~--~~------- 257 (337)
T 1gxr_A 198 LWTGGLD-----NTVRSWDLREG-RQLQQHDFTS--QIFSLGYCPTGEWLA-VGMESSN--VEVLHVNK--PD------- 257 (337)
T ss_dssp EEEEETT-----SEEEEEETTTT-EEEEEEECSS--CEEEEEECTTSSEEE-EEETTSC--EEEEETTS--SC-------
T ss_pred EEEEecC-----CcEEEEECCCC-ceEeeecCCC--ceEEEEECCCCCEEE-EEcCCCc--EEEEECCC--CC-------
Confidence 7766543 46888888652 2222333322 345555544 4444 4444553 77888873 21
Q ss_pred ceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 421 KSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 421 ~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
...+......+....++++++.++. .+ .-..+..+|+.+++.
T Consensus 258 -~~~~~~~~~~v~~~~~~~~~~~l~~-~~---~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 258 -KYQLHLHESCVLSLKFAYCGKWFVS-TG---KDNLLNAWRTPYGAS 299 (337)
T ss_dssp -EEEECCCSSCEEEEEECTTSSEEEE-EE---TTSEEEEEETTTCCE
T ss_pred -eEEEcCCccceeEEEECCCCCEEEE-ec---CCCcEEEEECCCCeE
Confidence 1222222222334455667765543 22 235788999988774
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.9e-07 Score=104.18 Aligned_cols=259 Identities=11% Similarity=0.023 Sum_probs=144.3
Q ss_pred EEeeEEECC----CCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc-----------C-cceeEEEecCCeEEEEEe
Q 004368 192 SVGCFQVSP----DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-----------G-VTASVEWAGNEALVYITM 254 (758)
Q Consensus 192 ~i~~~~~SP----DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~-----------~-~~~~~~wspDg~l~y~~~ 254 (758)
....+.+|| ||++|+.+....+ +|.|+|.++++.+.. ... + ....+.+|||+..+|++.
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~~~~----~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAYWPP----QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEESS----EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CcceEEeCCCcCCCCCEEEEEEccCC----eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 346789999 9999876654333 688999999987653 221 1 234689999994444444
Q ss_pred CCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc----cc
Q 004368 255 DEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR----VV 330 (758)
Q Consensus 255 ~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~----~~ 330 (758)
.. ..+|+.+++.+... ..+..-....+..++.|+|||+++++..+. ...|.++|+.+++ +....+. ..
T Consensus 299 ~~---~g~i~vvd~~~~~~--l~~~~i~~~~~~~~~~~spdg~~l~va~~~--~~~v~v~D~~tg~-l~~~i~~g~~ph~ 370 (543)
T 1nir_A 299 KE---TGKVLLVNYKDIDN--LTVTSIGAAPFLHDGGWDSSHRYFMTAANN--SNKVAVIDSKDRR-LSALVDVGKTPHP 370 (543)
T ss_dssp TT---TTEEEEEECTTSSS--CEEEEEECCSSCCCEEECTTSCEEEEEEGG--GTEEEEEETTTTE-EEEEEECSSSBCC
T ss_pred CC---CCeEEEEEecCCCc--ceeEEeccCcCccCceECCCCCEEEEEecC--CCeEEEEECCCCe-EEEeeccCCCCCC
Confidence 32 23689989876532 221111223344467899999998776543 3457889999876 3332221 11
Q ss_pred c-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCC-------cceeeecCCCCceeeeEEEeCCEEEEEEEeC----C
Q 004368 331 G-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTS-------ETTVLIPHRESVKLQDIQLFIDHLAVYEREG----G 398 (758)
Q Consensus 331 ~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~----g 398 (758)
+ ....++|+++.+|+..+.+ ...|.+++.++.+ ..+.+-.+......-.+++++.+|++...-+ .
T Consensus 371 g~g~~~~~p~~g~~~~s~~~~---d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 371 GRGANFVHPKYGPVWSTSHLG---DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp TTCEEEEETTTEEEEEEEBSS---SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CCCcccCCCCCccEEEeccCC---CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 1 1122467777776655433 2457777765411 1111222222222233455666776544211 1
Q ss_pred eeEEEEEEcCCCCCcc-ccccCCceeeccCcccccCCCCcccCCcEEEEEEecC-CCCCEEEEEECCCCc
Q 004368 399 LQKITTYRLPAVGEPL-KSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSL-RTPPSVYDYDMDMGI 466 (758)
Q Consensus 399 ~~~l~v~~l~~~g~~~-~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~-~~P~~i~~~d~~~~~ 466 (758)
...|.||++.. ++.. +.++-.+--.+++....+..+.++++++.++++..+- ....+|..+|.++++
T Consensus 448 ~~~v~v~d~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 448 SQSVAVFDLKN-LDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp HTCEEEEETTC-TTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CceEEEEECCC-CCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 23588999874 3211 1110000000122211222345678999998876443 457899999999988
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-08 Score=106.56 Aligned_cols=209 Identities=11% Similarity=0.026 Sum_probs=113.9
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHH-HHHHHcCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACA-EYLIKNCYC 592 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~ 592 (758)
+..|.||++||.........|......| ..||.|+.+|+||.|.... ...+++++.+.+ +.+.+..
T Consensus 79 ~~~~~lv~lhG~~~~~~~~~~~~~~~~L-~~~~~v~~~d~~G~G~~~~----------~~~~~~~~~~~~~~~l~~~~-- 145 (319)
T 3lcr_A 79 QLGPQLILVCPTVMTTGPQVYSRLAEEL-DAGRRVSALVPPGFHGGQA----------LPATLTVLVRSLADVVQAEV-- 145 (319)
T ss_dssp CSSCEEEEECCSSTTCSGGGGHHHHHHH-CTTSEEEEEECTTSSTTCC----------EESSHHHHHHHHHHHHHHHH--
T ss_pred CCCCeEEEECCCCcCCCHHHHHHHHHHh-CCCceEEEeeCCCCCCCCC----------CCCCHHHHHHHHHHHHHHhc--
Confidence 4568899999932222233355555555 7899999999999885321 112344444332 2333221
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhC---CCceeEEEEcCCccchhh--ccCCCCCCCChhhh---hccCCCC-CHHHH---
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMR---PDLFKAAVAAVPFVDVLT--TMLDPTIPLTTAEW---EEWGDPW-KEEFY--- 660 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~~~~d~~~--~~~~~~~~~~~~~~---~e~g~p~-~~~~~--- 660 (758)
..+++.++|+|+||.++..++.+. |+.++++|+..+...... ........+....+ ..+.... .....
T Consensus 146 ~~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 225 (319)
T 3lcr_A 146 ADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDGGRPEELFRSALNERFVEYLRLTGGGNLSQRITAQ 225 (319)
T ss_dssp TTSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccchhhHHHHHHHHHHHHhhhhcccCCCchhHHHHHH
Confidence 236899999999999999988877 888888887765432110 00000000000000 0011111 01111
Q ss_pred -HHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCC--hHHHHHHHH
Q 004368 661 -FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG--RFERLREAA 737 (758)
Q Consensus 661 -~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~--~~~~~~~~~ 737 (758)
.++....-+ ...++++| +|+++|.+ +.+++.....+.+.+.. ..+.+.+ .++|..... ....+.+
T Consensus 226 ~~~~~~~~~~-~~~~i~~P-vLli~g~~-~~~~~~~~~~~~~~~~~---~~~~~~~----~g~H~~~~~~~~~~~va~-- 293 (319)
T 3lcr_A 226 VWCLELLRGW-RPEGLTAP-TLYVRPAQ-PLVEQEKPEWRGDVLAA---MGQVVEA----PGDHFTIIEGEHVASTAH-- 293 (319)
T ss_dssp HHHHHHTTTC-CCCCCSSC-EEEEEESS-CSSSCCCTHHHHHHHHT---CSEEEEE----SSCTTGGGSTTTHHHHHH--
T ss_pred HHHHHHHhcC-CCCCcCCC-EEEEEeCC-CCCCcccchhhhhcCCC---CceEEEe----CCCcHHhhCcccHHHHHH--
Confidence 111111111 22566888 99999988 66777777787776653 2344555 457765432 3333333
Q ss_pred HHHHHHHHhc
Q 004368 738 FTYTFLMRAL 747 (758)
Q Consensus 738 ~~~~fl~~~l 747 (758)
.+.+||.+..
T Consensus 294 ~i~~fL~~~~ 303 (319)
T 3lcr_A 294 IVGDWLREAH 303 (319)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 2578888765
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.8e-09 Score=106.05 Aligned_cols=101 Identities=11% Similarity=-0.020 Sum_probs=66.9
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
+..|.||++||+.+.... |..... +..||.|+.+|+||.+.. . ....+++++.+.+..+++.-. .
T Consensus 19 ~~~~~lv~lhg~~~~~~~--~~~~~~--l~~~~~v~~~d~~G~~~~-~---------~~~~~~~~~~~~~~~~i~~~~-~ 83 (265)
T 3ils_A 19 VARKTLFMLPDGGGSAFS--YASLPR--LKSDTAVVGLNCPYARDP-E---------NMNCTHGAMIESFCNEIRRRQ-P 83 (265)
T ss_dssp TSSEEEEEECCTTCCGGG--GTTSCC--CSSSEEEEEEECTTTTCG-G---------GCCCCHHHHHHHHHHHHHHHC-S
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHh--cCCCCEEEEEECCCCCCC-C---------CCCCCHHHHHHHHHHHHHHhC-C
Confidence 456789999997665433 444334 478999999999996321 1 112345555544333332211 2
Q ss_pred CCcEEEEEeChhHHHHHHHHh---hCCCceeEEEEcCCc
Q 004368 594 KEKLCIEGRSAGGLLIGAVLN---MRPDLFKAAVAAVPF 629 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~---~~p~~f~a~v~~~~~ 629 (758)
.+++.++|||+||.++..++. .+|+.++++|+..+.
T Consensus 84 ~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~ 122 (265)
T 3ils_A 84 RGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAP 122 (265)
T ss_dssp SCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred CCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCC
Confidence 358999999999999998887 678888888877653
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-09 Score=119.97 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=80.3
Q ss_pred CCEEEEecCCCccCCCCC-CChHHHHHHHcCcEEEEEecCCCC-CCchhHHhcccccCCcChHhHHHHHHHHHHHc---C
Q 004368 516 DPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQIRGGG-ELGRQWYENGKFLKKKNTFTDFIACAEYLIKN---C 590 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~~RG~g-~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~ 590 (758)
.|+||++|||........ .......|+++|++|+.+|||.+. ++... ......+...+.|..++++|+.++ -
T Consensus 115 ~Pviv~iHGGg~~~g~~~~~~~~~~~l~~~g~vvv~~nYRl~~~Gf~~~---~~~~~~~n~gl~D~~~al~wv~~~i~~f 191 (551)
T 2fj0_A 115 LPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYGFLSL---NSTSVPGNAGLRDMVTLLKWVQRNAHFF 191 (551)
T ss_dssp EEEEEEECCSTTTSCCSCTTTCBCTTGGGGSCEEEEECCCCHHHHHCCC---SSSSCCSCHHHHHHHHHHHHHHHHTGGG
T ss_pred CCEEEEEcCCccccCCCcccccCHHHHHhCCeEEEEeCCcCCccccccC---cccCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 899999999754322221 112335677899999999999641 11100 001122345689999999999876 2
Q ss_pred CCCCCcEEEEEeChhHHHHHHHHhh--CCCceeEEEEcCCcc
Q 004368 591 YCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPFV 630 (758)
Q Consensus 591 ~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~~~ 630 (758)
..|+++|.|+|+|+||.+++.++.. .+.+|+++|+.+|..
T Consensus 192 ggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 233 (551)
T 2fj0_A 192 GGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGTS 233 (551)
T ss_dssp TEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCT
T ss_pred CCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCCc
Confidence 3699999999999999999888875 357999999999863
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.5e-07 Score=98.35 Aligned_cols=200 Identities=11% Similarity=0.102 Sum_probs=123.1
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCC---CCceEEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEIL---RPDKAWLHK 267 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~---~~~~v~~~~ 267 (758)
+..+.|+|||++|+++...+| .|+++|+.+++.... ........++|+||| .++........ ....|++++
T Consensus 214 ~~~~~~~~~~~~l~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 214 SKILLYDPIRDLVYCSNWISE----DISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp EEEEEEETTTTEEEEEETTTT----EEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred eeEEEEcCCCCEEEEEecCCC----cEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 567899999999877765444 699999999887653 223335668999999 56555443211 134688889
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce-eeEEeecCCEEEEE
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFIT 346 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~ 346 (758)
+.++. ......... ....+.|+|||++|++..... ..|+++|+.+++ .....+..... ...|+|+|+.+++.
T Consensus 290 ~~~~~--~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~--~~v~v~d~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~ 362 (433)
T 3bws_A 290 MDKEK--LIDTIGPPG--NKRHIVSGNTENKIYVSDMCC--SKIEVYDLKEKK-VQKSIPVFDKPNTIALSPDGKYLYVS 362 (433)
T ss_dssp TTTTE--EEEEEEEEE--CEEEEEECSSTTEEEEEETTT--TEEEEEETTTTE-EEEEEECSSSEEEEEECTTSSEEEEE
T ss_pred CCCCc--EEeeccCCC--CcceEEECCCCCEEEEEecCC--CEEEEEECCCCc-EEEEecCCCCCCeEEEcCCCCEEEEE
Confidence 87652 222222111 233678999999988765433 468888998765 33322322222 33499999988887
Q ss_pred EcCCCC----------CCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC--CEEEEEEEeCCeeEEEEEEcC
Q 004368 347 RRSDEL----------FNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 347 s~~~~~----------~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~l~v~~l~ 408 (758)
....+. ..+.|+.+|+.+. .....+.... .+..+.+.. +.+++....++ .+.+|+++
T Consensus 363 ~~~~~~~~~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~d~--~i~v~~~~ 431 (433)
T 3bws_A 363 CRGPNHPTEGYLKKGLVLGKVYVIDTTTD-TVKEFWEAGN--QPTGLDVSPDNRYLVISDFLDH--QIRVYRRD 431 (433)
T ss_dssp ECCCCCTTTCTTSCCSSCCEEEEEETTTT-EEEEEEECSS--SEEEEEECTTSCEEEEEETTTT--EEEEEEET
T ss_pred ecCCCccccccccccccceEEEEEECCCC-cEEEEecCCC--CCceEEEcCCCCEEEEEECCCC--eEEEEEec
Confidence 764311 1358999998763 2223343322 345666654 45544433354 47788765
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.83 E-value=7.3e-09 Score=116.50 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=89.1
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCC-ChHHHHHHH-cCcEEEEEecCCCC-CCchhHHhcccc
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF-NSSRLSLLD-RGFIFAIAQIRGGG-ELGRQWYENGKF 569 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~-~~~~~~l~~-~G~~v~~~~~RG~g-~~G~~~~~~~~~ 569 (758)
+.|...+ .++.|+.. .++.|+||++|||......... ......|++ .|++|+.+|||.+. +++... ....
T Consensus 89 ~edcl~l--nv~~P~~~---~~~~Pv~v~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~ 161 (529)
T 1p0i_A 89 SEDCLYL--NVWIPAPK---PKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALP--GNPE 161 (529)
T ss_dssp CSCCCEE--EEEEESSC---CSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCTT
T ss_pred CCcCCeE--EEeeCCCC---CCCCeEEEEECCCccccCCCCccccChHHHhccCCeEEEEecccccccccccCC--CCCC
Confidence 5566444 45567653 2568999999998543322211 122356666 69999999999531 111000 0001
Q ss_pred cCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhC--CCceeEEEEcCCccc
Q 004368 570 LKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFVD 631 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~~d 631 (758)
..+...+.|..+|++|+.++ ...||++|.|+|+|+||.+++.++... ..+|+++|+.+|...
T Consensus 162 ~~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 228 (529)
T 1p0i_A 162 APGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN 228 (529)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred CcCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCccc
Confidence 22334578999999999876 247999999999999999998888753 468999999999754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.1e-06 Score=90.93 Aligned_cols=247 Identities=9% Similarity=0.004 Sum_probs=134.7
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|+|||++|+.... +| .|++||+.+++.... ........+.|+||+ .++....+.......+.++++.
T Consensus 76 ~v~~~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGSA-DY----SIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp CEEEEEECTTSSEEEEEET-TT----EEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEeC-CC----eEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 4678899999999986644 33 699999999987654 333346679999999 5555544312222346666665
Q ss_pred CCCCCcEEE----------eeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeecccccee-eEEe
Q 004368 270 ADQSNDICL----------YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVD-TAAS 337 (758)
Q Consensus 270 ~~~~~~~~v----------~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~-~~~s 337 (758)
......... ...........+.|+|||++|+....+ ..|+++|+.+.. ....+......+. ..|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 227 (369)
T 3zwl_B 151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD---GKISKYDVSNNYEYVDSIDLHEKSISDMQFS 227 (369)
T ss_dssp ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT---SEEEEEETTTTTEEEEEEECCSSCEEEEEEC
T ss_pred CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC---CEEEEEECCCCcEeEEEEecCCCceeEEEEC
Confidence 442211111 111111134567899999998775443 458888998733 2333433333333 3489
Q ss_pred ecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCC-----------eeEEEEEE
Q 004368 338 HRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGG-----------LQKITTYR 406 (758)
Q Consensus 338 ~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~l~v~~ 406 (758)
|+|+.|+..+.. ..|..+|+.+. .....+..........+++++..+++....++ ...+.+|+
T Consensus 228 ~~~~~l~~~~~d-----~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 228 PDLTYFITSSRD-----TNSFLVDVSTL-QVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp TTSSEEEEEETT-----SEEEEEETTTC-CEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred CCCCEEEEecCC-----ceEEEEECCCC-ceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 999988766543 46888888763 22223333322222233334455554443221 22567777
Q ss_pred cCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCC
Q 004368 407 LPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMG 465 (758)
Q Consensus 407 l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~ 465 (758)
+.. ++.+ ..+......+..+.++++++.++ +.+ .-..+..+++.++
T Consensus 302 ~~~-~~~~--------~~~~~~~~~v~~~~~s~~~~~l~-s~~---~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 302 KIF-EEEI--------GRVQGHFGPLNTVAISPQGTSYA-SGG---EDGFIRLHHFEKS 347 (369)
T ss_dssp TTT-CCEE--------EEEECCSSCEEEEEECTTSSEEE-EEE---TTSEEEEEEECHH
T ss_pred cCC-Ccch--------hheecccCcEEEEEECCCCCEEE-EEc---CCCeEEEEECccc
Confidence 653 2211 12222222333345566666543 222 1246666766543
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.80 E-value=6.5e-09 Score=116.96 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=89.0
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCC-ChHHHHHH-HcCcEEEEEecCCCC-CCchhHHhcccc
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF-NSSRLSLL-DRGFIFAIAQIRGGG-ELGRQWYENGKF 569 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~-~~~~~~l~-~~G~~v~~~~~RG~g-~~G~~~~~~~~~ 569 (758)
+.|...+. ++.|+.. .++.|+||++|||......... ......|+ ++|++|+.+|||-+. ++... .....
T Consensus 91 sedcl~ln--v~~P~~~---~~~~Pv~v~iHGG~~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~--~~~~~ 163 (537)
T 1ea5_A 91 SEDCLYLN--IWVPSPR---PKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLAL--HGSQE 163 (537)
T ss_dssp CSCCCEEE--EEECSSC---CSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCC--TTCSS
T ss_pred CCcCCeEE--EeccCCC---CCCCeEEEEECCCcccCCCCCCCccChHHHHhcCCEEEEEeccCccccccccC--CCCCC
Confidence 56765554 4556543 2568999999997543322211 12235666 679999999999531 11100 00001
Q ss_pred cCCcChHhHHHHHHHHHHHcC---CCCCCcEEEEEeChhHHHHHHHHhh--CCCceeEEEEcCCccc
Q 004368 570 LKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPFVD 631 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~~~d 631 (758)
..+...+.|..+|++|+.++- ..||++|.|+|+|+||.++..++.. ...+|+++|+.+|...
T Consensus 164 ~~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 230 (537)
T 1ea5_A 164 APGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 230 (537)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred CcCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCcc
Confidence 223345899999999998762 4699999999999999999888775 2468999999999653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=8.8e-07 Score=92.97 Aligned_cols=194 Identities=11% Similarity=0.118 Sum_probs=117.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.++|+++.+|-... + ..|++||+.+++.... .. ......++|+|||.++++...+ ..+.++++.
T Consensus 82 ~v~~~~~~~~~~~l~s~s~-D----~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~d----g~v~i~~~~ 152 (321)
T 3ow8_A 82 GVVSVDISHTLPIAASSSL-D----AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHV----GKVNIFGVE 152 (321)
T ss_dssp CEEEEEECSSSSEEEEEET-T----SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTT----SEEEEEETT
T ss_pred CEEEEEECCCCCEEEEEeC-C----CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCC----CcEEEEEcC
Confidence 4677899999998874432 2 3799999999887643 11 2224558999999544444322 257788887
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEEEc
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRR 348 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~ 348 (758)
++. ....+.. .......+.|+|||++|+..+.+ ..|.++|+.+++....+......+. ..|+|+|+.|+..+.
T Consensus 153 ~~~--~~~~~~~-~~~~v~~~~~spdg~~lasg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 153 SGK--KEYSLDT-RGKFILSIAYSPDGKYLASGAID---GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp TCS--EEEEEEC-SSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred CCc--eeEEecC-CCceEEEEEECCCCCEEEEEcCC---CeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence 663 3333332 23345578899999998876544 3478889887752333433333333 349999986655433
Q ss_pred CCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+ ..|..+|+........+..+.. .+..+.+..+ ..++....++. +++|++..
T Consensus 227 -d----g~i~iwd~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~s~D~~--v~iwd~~~ 279 (321)
T 3ow8_A 227 -D----GYIKIYDVQHANLAGTLSGHAS--WVLNVAFCPDDTHFVSSSSDKS--VKVWDVGT 279 (321)
T ss_dssp -T----SCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSC--EEEEETTT
T ss_pred -C----CeEEEEECCCcceeEEEcCCCC--ceEEEEECCCCCEEEEEeCCCc--EEEEeCCC
Confidence 2 3467778765322222333332 3455666543 33445556664 77888873
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-08 Score=102.89 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=85.1
Q ss_pred CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCC-hHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCc
Q 004368 495 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN-SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 573 (758)
Q Consensus 495 dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~ 573 (758)
++.++...++.|+.. . .+..+.||++||..+.... .|. .....|.++||.|+.+|+||.|.... .
T Consensus 12 ~~~~l~~~i~~p~~~-~-~~~~~~VvllHG~~~~~~~-~~~~~l~~~L~~~G~~v~~~d~~g~g~~~~-----------~ 77 (317)
T 1tca_A 12 PKSVLDAGLTCQGAS-P-SSVSKPILLVPGTGTTGPQ-SFDSNWIPLSTQLGYTPCWISPPPFMLNDT-----------Q 77 (317)
T ss_dssp CHHHHHHTEEETTBC-T-TSCSSEEEEECCTTCCHHH-HHTTTHHHHHHTTTCEEEEECCTTTTCSCH-----------H
T ss_pred CHHHHhheeeCCCCC-C-CCCCCeEEEECCCCCCcch-hhHHHHHHHHHhCCCEEEEECCCCCCCCcH-----------H
Confidence 333455556667655 3 2345678999996554321 144 55667778899999999998764221 1
Q ss_pred ChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCC---CceeEEEEcCCccc
Q 004368 574 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVAAVPFVD 631 (758)
Q Consensus 574 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~~~~d 631 (758)
...+++.+.++++.++. ..+++.++|||+||.++..++.++| +.++++|+.+|..+
T Consensus 78 ~~~~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~ 136 (317)
T 1tca_A 78 VNTEYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 136 (317)
T ss_dssp HHHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCC
Confidence 23467888888887653 2379999999999999988888765 78999999887643
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.8e-06 Score=87.20 Aligned_cols=239 Identities=9% Similarity=0.052 Sum_probs=133.6
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++||-+.. + ..|++||+.+++.... .. ......+.|+||+.++++...+ ..|.++++.
T Consensus 15 ~V~~~~fsp~~~~l~s~~~-d----g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d----~~i~vwd~~ 85 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLY-S----GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD----FRIRVFNYN 85 (304)
T ss_dssp CEEEEEECSSSSEEEEEET-T----SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT----SEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEcC-C----CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCC----CEEEEEECC
Confidence 3678899999999986543 2 3699999999876542 21 2235568999999554555433 257888888
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCce-EEeeccccceee-EEeec-CCEEEEE
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL-RVLTPRVVGVDT-AASHR-GNHFFIT 346 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~-~~l~~~~~~~~~-~~s~d-g~~l~~~ 346 (758)
++ +....+... ......+.++||+++|+..+.+ ..|.++|+.++... +.+......+.. .|+|+ +..|+..
T Consensus 86 ~~--~~~~~~~~h-~~~v~~~~~~~~~~~l~sgs~D---~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 86 TG--EKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDD---LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp TC--CEEEEEECC-SSCEEEEEECSSSSEEEEEETT---SCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred CC--cEEEEEeCC-CCcEEEEEEcCCCCEEEEECCC---CeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 76 333444432 3344578899999987754433 23566677665312 223333333333 38884 5555443
Q ss_pred EcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEE--eCC-EEEEEEEeCCeeEEEEEEcCCCCCccccccCCcee
Q 004368 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL--FID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 423 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i 423 (758)
..+ ..|...|+........+.... ...+..+.+ ..+ .+++....++. +++|++.. +..+ .
T Consensus 160 -s~D----~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~--i~iWd~~~-~~~~--------~ 222 (304)
T 2ynn_A 160 -CLD----RTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLT--IKIWDYQT-KSCV--------A 222 (304)
T ss_dssp -ETT----SEEEEEETTCSSCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTSE--EEEEETTT-TEEE--------E
T ss_pred -eCC----CeEEEEECCCCCccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCCe--EEEEeCCC-Cccc--------e
Confidence 333 357777876532222233222 222333333 223 45556666765 77888873 2211 1
Q ss_pred eccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 424 EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 424 ~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.+..+...+....++++++.+ ++.+. -..+..+|..+++
T Consensus 223 ~~~~h~~~v~~~~~~p~~~~l-~s~s~---Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 223 TLEGHMSNVSFAVFHPTLPII-ISGSE---DGTLKIWNSSTYK 261 (304)
T ss_dssp EEECCSSCEEEEEECSSSSEE-EEEET---TSCEEEEETTTCC
T ss_pred eeCCCCCCEEEEEECCCCCEE-EEEcC---CCeEEEEECCCCc
Confidence 222222223333455666543 33332 2458888888876
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.1e-06 Score=88.56 Aligned_cols=196 Identities=10% Similarity=0.105 Sum_probs=117.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++||.... +| .|+|||+.+++.... . -.+....++|+||+.++++...+ ..|.++++.
T Consensus 34 ~v~~~~~s~~~~~l~~~~~-dg----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd~~ 104 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSK-DS----SASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD----YSIKLWDVS 104 (369)
T ss_dssp CEEEEEECTTSCEEEEEES-SS----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT----TEEEEEETT
T ss_pred eEEEEEEcCCCCEEEEEeC-CC----EEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC----CeEEEEECC
Confidence 4778899999999987653 23 599999999887653 1 12335679999999444444332 258888988
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecC--CcceEEEEEeCCCCC---c--------eEEeecccc--cee-
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES--KITRFVFYLDVSKPE---E--------LRVLTPRVV--GVD- 333 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~--~~~~~l~~~d~~~~~---~--------~~~l~~~~~--~~~- 333 (758)
++. ....+. .......+.|+|||++|+....+ .....|.++|+.+.. . ...+..... .+.
T Consensus 105 ~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 105 NGQ--CVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TCC--EEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCc--EEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 763 333443 22334468899999999887654 222456666665432 1 111111111 222
Q ss_pred eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCccee-eecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 334 TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 334 ~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
..|+++|+.|+..+.. ..|..+|+........ +..+. ..+..+.+..+ .++++...++ .+.+|++..
T Consensus 181 ~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~ 249 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDSIDLHE--KSISDMQFSPDLTYFITSSRDT--NSFLVDVST 249 (369)
T ss_dssp EEECGGGCEEEEEETT-----SEEEEEETTTTTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTS--EEEEEETTT
T ss_pred EEEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEEEecCC--CceeEEEECCCCCEEEEecCCc--eEEEEECCC
Confidence 3489999977765443 4688888865222222 33332 24556666543 2334445555 477898874
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-05 Score=82.49 Aligned_cols=194 Identities=10% Similarity=0.090 Sum_probs=116.8
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc--ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++||.... +| .|++|++.+++..... -......++|+||+.++++...+ ..|.++++.
T Consensus 25 ~v~~~~~s~~~~~l~s~~~-dg----~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~vwd~~ 95 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSA-DK----LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD----KTLKIWDVS 95 (312)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETT
T ss_pred cEEEEEECCCCCEEEEeeC-CC----eEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCC----CEEEEEECC
Confidence 4778899999999986653 23 5899999988766531 12235669999999544454432 247788887
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEEEc
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRR 348 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~ 348 (758)
++ +....+... ......+.|+|++++|+..+.+ ..|.++|+.+++....+......+. ..|+++|+.|+..+.
T Consensus 96 ~~--~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 96 SG--KCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFD---ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp TC--CEEEEEECC-SSCEEEEEECSSSSEEEEEETT---SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CC--cEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 66 233334332 2334467899999988765543 3478889887662333433333333 348899987765544
Q ss_pred CCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC--CEEEEEEEeCCeeEEEEEEcCC
Q 004368 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+ ..|..+|+........+... ....+..+.+.. +.++ ....++ .+.+|++..
T Consensus 170 d-----~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~~d~--~i~iwd~~~ 223 (312)
T 4ery_A 170 D-----GLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYIL-AATLDN--TLKLWDYSK 223 (312)
T ss_dssp T-----SCEEEEETTTCCEEEEECCS-SCCCEEEEEECTTSSEEE-EEETTT--EEEEEETTT
T ss_pred C-----CcEEEEECCCCceeeEEecc-CCCceEEEEECCCCCEEE-EEcCCC--eEEEEECCC
Confidence 3 35777787653222223222 222344455544 4443 455555 477888873
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-08 Score=114.81 Aligned_cols=133 Identities=17% Similarity=0.167 Sum_probs=87.2
Q ss_pred eeCCCCeEEEEEEEeeccccc-cCCCCCEEEEecCCCccCCCC---CC----ChHHHHHHHc-CcEEEEEecCCCC-CCc
Q 004368 491 ASASDGTQIPICIVYRKNLVK-LDGSDPLLLYGYGSYEICNDP---AF----NSSRLSLLDR-GFIFAIAQIRGGG-ELG 560 (758)
Q Consensus 491 ~~s~dG~~i~~~l~~p~~~~~-~~~~~P~vl~~hGg~~~~~~~---~~----~~~~~~l~~~-G~~v~~~~~RG~g-~~G 560 (758)
+.+.|...+ .++.|... . .+++.|+||++|||....... .+ ......|+.+ |++|+.+|||-+. ++.
T Consensus 75 ~~sedcl~l--nv~~P~~~-~~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl 151 (579)
T 2bce_A 75 YGNEDCLYL--NIWVPQGR-KEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFL 151 (579)
T ss_dssp ESCSCCCEE--EEEEEECS-SSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHC
T ss_pred CCCCCCCEE--EEEECCCC-CCCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCC
Confidence 346676544 45567654 2 345789999999985432221 11 1123456554 7999999999432 111
Q ss_pred hhHHhcccccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhh--CCCceeEEEEcCCc
Q 004368 561 RQWYENGKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPF 629 (758)
Q Consensus 561 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~~ 629 (758)
.. ......+...+.|..+|++|+.++ ...||++|.|+|+|+||.++..++.. ...+|+++|+.+|.
T Consensus 152 ~~---~~~~~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 152 ST---GDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp CC---SSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred cC---CCCCCCCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 10 000112223578999999999775 34699999999999999999887764 35699999999874
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-06 Score=102.91 Aligned_cols=238 Identities=8% Similarity=0.018 Sum_probs=137.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+..++|||||++||.+.. +| .|+|||+.+|+.... . ..+....++|+||| .|+....+ ..|.++++
T Consensus 15 ~v~~i~~sp~~~~la~~~~-~g----~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~ 84 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLY-SG----RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD-----FRIRVFNY 84 (814)
T ss_dssp CEEEEEECSSSSEEEEEET-TS----EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT-----SEEEEEET
T ss_pred ceEEEEECCCCCEEEEEeC-CC----EEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCC-----CeEEEEEC
Confidence 3678899999999998764 23 699999999877653 2 22336679999999 55554432 25888888
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeecccccee-eEEee-cCCEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVD-TAASH-RGNHFFI 345 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~-~~~s~-dg~~l~~ 345 (758)
.++ +....+.. .......+.|+|||++|+..+.+ ..|.++|+.++. ....+......+. ..|+| +++.|+.
T Consensus 85 ~~~--~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 85 NTG--EKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDD---LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp TTC--CEEEEEEC-CSSCEEEEEECSSSSEEEEEETT---SEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred CCC--cEEEEEec-CCCCEEEEEEeCCCCEEEEEcCC---CEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 776 33333433 23334578899999998765433 346677776653 2233333333333 34888 6666555
Q ss_pred EEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC---CEEEEEEEeCCeeEEEEEEcCCCCCccccccCCce
Q 004368 346 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI---DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKS 422 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~ 422 (758)
.+.. ..|..+++.+......+.... ...+..+.+.. +.++++...+| .+.+|++.. +..+
T Consensus 159 ~~~d-----g~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~-~~~~-------- 221 (814)
T 3mkq_A 159 GCLD-----RTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDL--TIKIWDYQT-KSCV-------- 221 (814)
T ss_dssp EETT-----SEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTS--EEEEEETTT-TEEE--------
T ss_pred EeCC-----CeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCC--EEEEEECCC-CcEE--------
Confidence 4433 467778876533222233222 12334445432 23444555555 477888763 3211
Q ss_pred eeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 423 VEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 423 i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
..+..+...+....++++++.+.... .-..+..+|+.+++
T Consensus 222 ~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 222 ATLEGHMSNVSFAVFHPTLPIIISGS----EDGTLKIWNSSTYK 261 (814)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEE----TTSCEEEEETTTCS
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCc
Confidence 11222222333345566776553322 12467888887766
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-06 Score=93.26 Aligned_cols=197 Identities=8% Similarity=0.065 Sum_probs=114.9
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++|+.... + ..|++||+.+++.... . -......++|+||+.++++...+. .|.++++.
T Consensus 141 ~v~~~~~~~~~~~l~s~s~-d----~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~----~v~iwd~~ 211 (420)
T 3vl1_A 141 EITKLKFFPSGEALISSSQ-D----MQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG----TIRLWECG 211 (420)
T ss_dssp CEEEEEECTTSSEEEEEET-T----SEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTS----CEEEEETT
T ss_pred ccEEEEECCCCCEEEEEeC-C----CeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCC----cEEEeECC
Confidence 5778899999998886543 2 3799999998876542 1 123356699999994444443322 37777776
Q ss_pred CCCCCcEEEeeecC-----------------------CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEee
Q 004368 270 ADQSNDICLYHEKD-----------------------DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT 326 (758)
Q Consensus 270 ~~~~~~~~v~~~~~-----------------------~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~ 326 (758)
++ +....+.... ......+.|+|||++|+....+ ..|.++|+.+++....+.
T Consensus 212 ~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~ 286 (420)
T 3vl1_A 212 TG--TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS---GVITVHNVFSKEQTIQLP 286 (420)
T ss_dssp TT--EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT---SCEEEEETTTCCEEEEEC
T ss_pred CC--ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC---CeEEEEECCCCceeEEcc
Confidence 65 2233332210 0111134578999998765543 347888988766223332
Q ss_pred c-ccccee-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCc-ceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEE
Q 004368 327 P-RVVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSE-TTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKIT 403 (758)
Q Consensus 327 ~-~~~~~~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~ 403 (758)
. ....+. ..|+|+|+.+++....+ +.|..+|+.+... ...+..+. ...+..+.+..+.++++...++. ++
T Consensus 287 ~~~~~~v~~~~~~~~~~~~l~~g~~d----g~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~s~~~d~~--v~ 359 (420)
T 3vl1_A 287 SKFTCSCNSLTVDGNNANYIYAGYEN----GMLAQWDLRSPECPVGEFLINE-GTPINNVYFAAGALFVSSGFDTS--IK 359 (420)
T ss_dssp CTTSSCEEEEEECSSCTTEEEEEETT----SEEEEEETTCTTSCSEEEEEST-TSCEEEEEEETTEEEEEETTTEE--EE
T ss_pred cccCCCceeEEEeCCCCCEEEEEeCC----CeEEEEEcCCCcCchhhhhccC-CCCceEEEeCCCCEEEEecCCcc--EE
Confidence 2 222233 34899998333443333 4688888876432 22233322 22345555555666666666654 77
Q ss_pred EEEcCC
Q 004368 404 TYRLPA 409 (758)
Q Consensus 404 v~~l~~ 409 (758)
+|++..
T Consensus 360 iw~~~~ 365 (420)
T 3vl1_A 360 LDIISD 365 (420)
T ss_dssp EEEECC
T ss_pred EEeccC
Confidence 888764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2.8e-06 Score=88.68 Aligned_cols=192 Identities=12% Similarity=0.092 Sum_probs=117.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc---cCcceeEEEecCCeEEEEEeCCCCCCceEEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL---VGVTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~---~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~ 267 (758)
.+..+.|+|||++|+.... + ..|+++|+.+++.... .+ ......++|+||+.++++...+. .+++++
T Consensus 99 ~v~~~~~~~~~~~l~~~~~-d----~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~v~~~d 169 (337)
T 1gxr_A 99 YIRSCKLLPDGCTLIVGGE-A----STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG----NIAVWD 169 (337)
T ss_dssp BEEEEEECTTSSEEEEEES-S----SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS----CEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcC-C----CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC----cEEEEe
Confidence 4778899999999987654 2 3699999998873221 22 22356689999995444444322 488888
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEE
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFIT 346 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~ 346 (758)
+.++ +....+... ......+.|+|||++|+..+.+ ..|+++|+.+++ ..........+. ..|+|+|+.+++.
T Consensus 170 ~~~~--~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~ 242 (337)
T 1gxr_A 170 LHNQ--TLVRQFQGH-TDGASCIDISNDGTKLWTGGLD---NTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp TTTT--EEEEEECCC-SSCEEEEEECTTSSEEEEEETT---SEEEEEETTTTE-EEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCCC--ceeeeeecc-cCceEEEEECCCCCEEEEEecC---CcEEEEECCCCc-eEeeecCCCceEEEEECCCCCEEEEE
Confidence 8765 233334332 2234468899999998875533 458888998765 322222222232 3489999988776
Q ss_pred EcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+.. ..|..+++.+.. ...+..+ ...+..+.+..+ .++++...+|. +.+|++..
T Consensus 243 ~~~-----~~i~~~~~~~~~-~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~--i~~~~~~~ 296 (337)
T 1gxr_A 243 MES-----SNVEVLHVNKPD-KYQLHLH--ESCVLSLKFAYCGKWFVSTGKDNL--LNAWRTPY 296 (337)
T ss_dssp ETT-----SCEEEEETTSSC-EEEECCC--SSCEEEEEECTTSSEEEEEETTSE--EEEEETTT
T ss_pred cCC-----CcEEEEECCCCC-eEEEcCC--ccceeEEEECCCCCEEEEecCCCc--EEEEECCC
Confidence 543 357777876532 2223333 234566666643 33445555664 77898874
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=6.4e-07 Score=93.76 Aligned_cols=222 Identities=12% Similarity=-0.038 Sum_probs=123.3
Q ss_pred EEEEEECCCCceeec-cccC---cceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCC----ceee
Q 004368 218 TVYVIDIETGTPVGK-PLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDD----IYSL 288 (758)
Q Consensus 218 ~l~v~dl~~g~~~~~-~~~~---~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~----~~~~ 288 (758)
+|+++|+.+++.+.. .... ....++|+||| .++++... ...|+.+++.++. ....+..... ....
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~----~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~ 85 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK----SESLVKIDLVTGE--TLGRIDLSTPEERVKSLF 85 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT----TTEEEEEETTTCC--EEEEEECCBTTEEEECTT
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC----CCeEEEEECCCCC--eEeeEEcCCccccccccc
Confidence 699999999987653 3344 34569999999 56555432 2368888987763 2222221110 0122
Q ss_pred EEEEcCCCcEEEEEecC------C---cceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEE
Q 004368 289 GLQASESKKFLFIASES------K---ITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLA 359 (758)
Q Consensus 289 ~~~~S~Dg~~l~~~s~~------~---~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~ 359 (758)
.+.|+|||++|++.... . ....|+++|+++++....+.....-....|+|||++||+. + ..|+.
T Consensus 86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~----~~i~~ 158 (337)
T 1pby_B 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL---G----RDLHV 158 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE---S----SSEEE
T ss_pred ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe---C----CeEEE
Confidence 57899999998887521 1 2478999999876522222222111234599999988877 2 34888
Q ss_pred EeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCe---------------------eEEEEEEcCCCCCcccccc
Q 004368 360 CPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGL---------------------QKITTYRLPAVGEPLKSLQ 418 (758)
Q Consensus 360 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------------------~~l~v~~l~~~g~~~~~l~ 418 (758)
+|+++. .....++.........+++++..+++....++. ..+.++++.. ++ .
T Consensus 159 ~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~-~---- 231 (337)
T 1pby_B 159 MDPEAG-TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET-GE-M---- 231 (337)
T ss_dssp EETTTT-EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT-CC-E----
T ss_pred EECCCC-cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC-CC-c----
Confidence 888653 222223222101112444555544333222111 1466777663 22 1
Q ss_pred CCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 419 GGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 419 ~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
..+.+......+.++.++++++.+++. -..++.+|+.+++.
T Consensus 232 --~~~~~~~~~~~~~~~~~s~dg~~l~~~------~~~v~~~d~~~~~~ 272 (337)
T 1pby_B 232 --AMREVRIMDVFYFSTAVNPAKTRAFGA------YNVLESFDLEKNAS 272 (337)
T ss_dssp --EEEEEEECSSCEEEEEECTTSSEEEEE------ESEEEEEETTTTEE
T ss_pred --eEeecCCCCCceeeEEECCCCCEEEEe------CCeEEEEECCCCcC
Confidence 112221111111234567788877665 26899999988873
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=9.6e-07 Score=93.00 Aligned_cols=152 Identities=9% Similarity=0.059 Sum_probs=88.6
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccC--cceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG--VTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~--~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
++.+++++++++-.. .. .+|+++|+++++.... .... ....++|+|||+.+|+.... ...|+.+++.++
T Consensus 4 g~~~~~~~~~~v~~~-~~----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~---~~~i~~~d~~t~ 75 (349)
T 1jmx_B 4 GPALKAGHEYMIVTN-YP----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH---YGDIYGIDLDTC 75 (349)
T ss_dssp CCCCCTTCEEEEEEE-TT----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT---TTEEEEEETTTT
T ss_pred cccccCCCEEEEEeC-CC----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC---CCcEEEEeCCCC
Confidence 346777777655333 22 3799999999987653 3333 34568999999544444322 246888898766
Q ss_pred CCCcEEEeeecC-----CceeeEEEEcCCCcEEEEEecC---------CcceEEEEEeCCCCC--ceEEeeccccce-ee
Q 004368 272 QSNDICLYHEKD-----DIYSLGLQASESKKFLFIASES---------KITRFVFYLDVSKPE--ELRVLTPRVVGV-DT 334 (758)
Q Consensus 272 ~~~~~~v~~~~~-----~~~~~~~~~S~Dg~~l~~~s~~---------~~~~~l~~~d~~~~~--~~~~l~~~~~~~-~~ 334 (758)
. ....+.... ......+.+||||++|++.... .....|+++|+++++ ............ ..
T Consensus 76 ~--~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 153 (349)
T 1jmx_B 76 K--NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 153 (349)
T ss_dssp E--EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE
T ss_pred c--EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccce
Confidence 2 222222111 0112356899999999887643 113579999998744 111111111222 23
Q ss_pred EEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 335 AASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 335 ~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
.|+|||+ +|+. .. .|+++|+.+
T Consensus 154 ~~s~dg~-l~~~-~~------~i~~~d~~~ 175 (349)
T 1jmx_B 154 RAADDGS-LYVA-GP------DIYKMDVKT 175 (349)
T ss_dssp EECTTSC-EEEE-SS------SEEEECTTT
T ss_pred eECCCCc-EEEc-cC------cEEEEeCCC
Confidence 3899998 6663 11 277777654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=8.6e-06 Score=92.03 Aligned_cols=252 Identities=11% Similarity=0.019 Sum_probs=139.3
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEEC--CCCceeec-cccCcceeEEEec----CCeEEEEEeCCCCCCceEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDI--ETGTPVGK-PLVGVTASVEWAG----NEALVYITMDEILRPDKAWL 265 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl--~~g~~~~~-~~~~~~~~~~wsp----Dg~l~y~~~~~~~~~~~v~~ 265 (758)
+..+.+||||++|+.... + ..|.++|+ ++++.+.. ........++||| ||+.+|+.... +..|.+
T Consensus 181 ~~~v~~spdg~~l~v~~~-d----~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~---~~~v~v 252 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGR-D----ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW---PPQFAI 252 (543)
T ss_dssp EEEEEECTTSCEEEEEET-T----SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE---SSEEEE
T ss_pred cceEEECCCCCEEEEECC-C----CeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEcc---CCeEEE
Confidence 457789999999865543 3 36999999 78776542 2222345689999 99555655421 234777
Q ss_pred EEcCCCCCCcEEEeee-c---------CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceE--Eeecccccee
Q 004368 266 HKLEADQSNDICLYHE-K---------DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR--VLTPRVVGVD 333 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~-~---------~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~--~l~~~~~~~~ 333 (758)
++..+... +..+.. . .......+.+|+|++.++++.. ....|+++|..+.+.+. .+.....-..
T Consensus 253 ~D~~t~~~--~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~--~~g~i~vvd~~~~~~l~~~~i~~~~~~~~ 328 (543)
T 1nir_A 253 MDGETLEP--KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK--ETGKVLLVNYKDIDNLTVTSIGAAPFLHD 328 (543)
T ss_dssp EETTTCCE--EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET--TTTEEEEEECTTSSSCEEEEEECCSSCCC
T ss_pred Eecccccc--ceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC--CCCeEEEEEecCCCcceeEEeccCcCccC
Confidence 78776632 222221 0 0112346789999998877553 44689999998765122 2211111122
Q ss_pred eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCC--C-ceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 334 TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE--S-VKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 334 ~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~--~-~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
..|+|+|++++...+.+ ..|.++|+.+. .....++... . .....+ .+.+ .-++.....+...|.+++.+.
T Consensus 329 ~~~spdg~~l~va~~~~----~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 329 GGWDSSHRYFMTAANNS----NKVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EEECTTSCEEEEEEGGG----TEEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred ceECCCCCEEEEEecCC----CeEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 35899999887766543 36778898763 2222222111 0 011122 1222 334444443445688999875
Q ss_pred CCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCC-----EEEEEECCCCc
Q 004368 410 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPP-----SVYDYDMDMGI 466 (758)
Q Consensus 410 ~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~-----~i~~~d~~~~~ 466 (758)
.+.....+.--+.+. .+......+..+++++.+++ .+...|. +|..+|..+++
T Consensus 403 ~~~~~~~~~~v~~l~--~~g~~~~~v~~~pdg~~l~v--~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 403 KNHPQYAWKKVAELQ--GQGGGSLFIKTHPKSSHLYV--DTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp TTCTTTBTSEEEEEE--CSCSCCCCEECCTTCCEEEE--CCTTCSSHHHHTCEEEEETTCTT
T ss_pred CCCchhcCeEEEEEE--cCCCCceEEEcCCCCCcEEE--ecCCCCCcccCceEEEEECCCCC
Confidence 322100010012222 22111223556788887754 3333443 89999998876
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-08 Score=114.99 Aligned_cols=118 Identities=18% Similarity=0.103 Sum_probs=80.1
Q ss_pred CCCCCEEEEecCCCccCCCCCC-ChHHHHHHH-cCcEEEEEecCCC-CCCch---hHHh-cccccCCcChHhHHHHHHHH
Q 004368 513 DGSDPLLLYGYGSYEICNDPAF-NSSRLSLLD-RGFIFAIAQIRGG-GELGR---QWYE-NGKFLKKKNTFTDFIACAEY 585 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~-~~~~~~l~~-~G~~v~~~~~RG~-g~~G~---~~~~-~~~~~~~~~~~~D~~~~~~~ 585 (758)
+++.|+||++|||......... ......|++ .|++|+.+|||-+ -||.. .+.. ......+...+.|..+|++|
T Consensus 138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al~w 217 (585)
T 1dx4_A 138 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRW 217 (585)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcccCCCCCCCCCCchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHHHH
Confidence 3568999999998543322211 112345665 6999999999932 11110 0000 11122334468999999999
Q ss_pred HHHcC---CCCCCcEEEEEeChhHHHHHHHHhhC--CCceeEEEEcCCcc
Q 004368 586 LIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFV 630 (758)
Q Consensus 586 l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~~ 630 (758)
+.++- ..||++|.|+|+|+||.++..++... ..+|+++|+.+|..
T Consensus 218 v~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 218 LKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 98872 36999999999999999988877752 36899999998853
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.1e-06 Score=89.31 Aligned_cols=241 Identities=12% Similarity=0.075 Sum_probs=139.6
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++||.+... | .|++||+.+++.... . -......+.| ++.++++...+ ..|..+++.
T Consensus 136 ~v~~v~~s~~~~~l~~~~~d-g----~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d----g~i~i~d~~ 204 (401)
T 4aez_A 136 YVASVKWSHDGSFLSVGLGN-G----LVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRS----GAIHHHDVR 204 (401)
T ss_dssp CEEEEEECTTSSEEEEEETT-S----CEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETT----SEEEEEETT
T ss_pred CEEEEEECCCCCEEEEECCC-C----eEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCC----CCEEEEecc
Confidence 46788999999999877642 3 599999999887653 1 1223566888 44344444432 258888887
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEEEc
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRR 348 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~ 348 (758)
.... ....+... ......+.|+|||++|+..+.+ ..|.++|+.++.....+......+. ..|+|++..+++...
T Consensus 205 ~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~ 279 (401)
T 4aez_A 205 IANH-QIGTLQGH-SSEVCGLAWRSDGLQLASGGND---NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG 279 (401)
T ss_dssp SSSC-EEEEEECC-SSCEEEEEECTTSSEEEEEETT---SCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC
T ss_pred cCcc-eeeEEcCC-CCCeeEEEEcCCCCEEEEEeCC---CeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec
Confidence 5432 23333332 2334578899999998876543 3578889987662333333333333 348998887777654
Q ss_pred CCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC--CEEEEEEE-eCCeeEEEEEEcCCCCCccccccCCceeec
Q 004368 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYER-EGGLQKITTYRLPAVGEPLKSLQGGKSVEF 425 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~l~~~~~-~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~ 425 (758)
. ..+..|..+|+.+. .....+.... .+..+.+.. ..++.... .+| .+.+|++.. +... ....+
T Consensus 280 g--s~d~~i~i~d~~~~-~~~~~~~~~~--~v~~~~~s~~~~~l~~~~g~~dg--~i~v~~~~~-~~~~------~~~~~ 345 (401)
T 4aez_A 280 G--TMDKQIHFWNAATG-ARVNTVDAGS--QVTSLIWSPHSKEIMSTHGFPDN--NLSIWSYSS-SGLT------KQVDI 345 (401)
T ss_dssp C--TTTCEEEEEETTTC-CEEEEEECSS--CEEEEEECSSSSEEEEEECTTTC--EEEEEEEET-TEEE------EEEEE
T ss_pred C--CCCCEEEEEECCCC-CEEEEEeCCC--cEEEEEECCCCCeEEEEeecCCC--cEEEEecCC-ccce------eEEEe
Confidence 2 12357888888763 2222333332 355666654 44443321 344 477888773 2111 12223
Q ss_pred cCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 426 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 426 p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
+.....+....+++++..++. .+ .-..+..+|+.+++
T Consensus 346 ~~h~~~v~~~~~s~dg~~l~s-~~---~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 346 PAHDTRVLYSALSPDGRILST-AA---SDENLKFWRVYDGD 382 (401)
T ss_dssp ECCSSCCCEEEECTTSSEEEE-EC---TTSEEEEEECCC--
T ss_pred cCCCCCEEEEEECCCCCEEEE-Ee---CCCcEEEEECCCCc
Confidence 333333444566777765533 22 23578888888776
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.70 E-value=7.7e-06 Score=84.92 Aligned_cols=196 Identities=11% Similarity=0.094 Sum_probs=116.8
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++|+.... + ..|++||+.+++.... . -......+.|+|++.++++...+. .+.++++.
T Consensus 67 ~v~~~~~~~~~~~l~s~~~-d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~----~i~iwd~~ 137 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASD-D----KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE----SVRIWDVK 137 (312)
T ss_dssp CEEEEEECTTSSEEEEEET-T----SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTS----CEEEEETT
T ss_pred ceEEEEEcCCCCEEEEECC-C----CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECC
Confidence 4678899999999987654 2 3699999999886642 1 122355689999995555544332 47888887
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-cccee-eEEeecCCEEEEEE
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVGVD-TAASHRGNHFFITR 347 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~-~~~s~dg~~l~~~s 347 (758)
++. ....+.... .....+.|+|||++|+..+.+ ..|.++|+.+++....+... ...+. ..|+|+|+.|+..+
T Consensus 138 ~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 138 TGK--CLKTLPAHS-DPVSAVHFNRDGSLIVSSSYD---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp TCC--EEEEECCCS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred CCE--EEEEecCCC-CcEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence 652 233333322 223467899999988765543 34778888876523333222 22223 34899999877655
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCce--eeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVK--LQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
.. ..|..+|+........+..+..... ...+...++.+++....+|. +++|++..
T Consensus 212 ~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~--i~vwd~~~ 268 (312)
T 4ery_A 212 LD-----NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL--VYIWNLQT 268 (312)
T ss_dssp TT-----TEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC--EEEEETTT
T ss_pred CC-----CeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE--EEEEECCC
Confidence 43 3577778765322222322222211 12233334555556666664 77888873
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=4.7e-06 Score=90.01 Aligned_cols=193 Identities=15% Similarity=0.090 Sum_probs=110.6
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc-------------------CcceeEEEecCCeEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-------------------GVTASVEWAGNEALVYI 252 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~-------------------~~~~~~~wspDg~l~y~ 252 (758)
+..++|||||++||.+.+ ..+.||++.+|+.... ... .....++|+|||.++++
T Consensus 67 V~~v~fspdg~~la~g~~------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGCN------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp CCEEEECTTSSEEEEECB------SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCEEEEEcC------CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 567899999999997643 2578899998876531 100 01456899999954455
Q ss_pred EeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce
Q 004368 253 TMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV 332 (758)
Q Consensus 253 ~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 332 (758)
...+. .|.++++.++ +....+.... .....+.|+|||++|+..+.+ ..|.++|+.+++ ..........+
T Consensus 141 ~~~d~----~i~iwd~~~~--~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d---~~v~iwd~~~~~-~~~~~~~~~~v 209 (393)
T 1erj_A 141 GAEDR----LIRIWDIENR--KIVMILQGHE-QDIYSLDYFPSGDKLVSGSGD---RTVRIWDLRTGQ-CSLTLSIEDGV 209 (393)
T ss_dssp EETTS----CEEEEETTTT--EEEEEECCCS-SCEEEEEECTTSSEEEEEETT---SEEEEEETTTTE-EEEEEECSSCE
T ss_pred EcCCC----eEEEEECCCC--cEEEEEccCC-CCEEEEEEcCCCCEEEEecCC---CcEEEEECCCCe-eEEEEEcCCCc
Confidence 44322 4778888765 3333444333 234478899999998755443 346777988765 32222222333
Q ss_pred e-eEEee-cCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeec-----CCCCceeeeEEEeCC-EEEEEEEeCCeeEEEE
Q 004368 333 D-TAASH-RGNHFFITRRSDELFNSELLACPVDNTSETTVLIP-----HRESVKLQDIQLFID-HLAVYEREGGLQKITT 404 (758)
Q Consensus 333 ~-~~~s~-dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v 404 (758)
. ..++| +|+.|+..+.+ ..|..+|+.+......+.. ......+..+.+..+ .+++....++. +.+
T Consensus 210 ~~~~~~~~~~~~l~~~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~--v~~ 282 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS--VKL 282 (393)
T ss_dssp EEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE--EEE
T ss_pred EEEEEECCCCCEEEEEcCC-----CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE--EEE
Confidence 3 34788 77766555443 3466667654221111210 112234556666543 33455666664 778
Q ss_pred EEcCC
Q 004368 405 YRLPA 409 (758)
Q Consensus 405 ~~l~~ 409 (758)
|++..
T Consensus 283 wd~~~ 287 (393)
T 1erj_A 283 WNLQN 287 (393)
T ss_dssp EEC--
T ss_pred EECCC
Confidence 88763
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.2e-06 Score=98.61 Aligned_cols=244 Identities=10% Similarity=0.007 Sum_probs=133.9
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
.+.+||||++||+..+ ..|+++|+++++.... . -.+....++|||||.++.+...+ ..|.++++.++.
T Consensus 23 ~~~~spdg~~l~~~~~------~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d----~~v~lWd~~~~~ 92 (611)
T 1nr0_A 23 VLGNTPAGDKIQYCNG------TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH----GNVRIWDTTQTT 92 (611)
T ss_dssp CCEECTTSSEEEEEET------TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEESSSTT
T ss_pred EEeeCCCCCEEEeCCC------CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCC----CCEEEeECCCCc
Confidence 4589999999999763 2689999987765542 1 12235668999999554554432 247777876543
Q ss_pred CCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCc-ceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEEcCC
Q 004368 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKI-TRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRRSD 350 (758)
Q Consensus 273 ~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~-~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~ 350 (758)
......+... ......++|+|||++|+..+.... ...|+++|... ....+......+.. .|+|++...++....+
T Consensus 93 ~~~~~~~~~~-~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D 169 (611)
T 1nr0_A 93 HILKTTIPVF-SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--SNGNLTGQARAMNSVDFKPSRPFRIISGSDD 169 (611)
T ss_dssp CCEEEEEECS-SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--BCBCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred ceeeEeeccc-CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC--CcceecCCCCCceEEEECCCCCeEEEEEeCC
Confidence 2222223222 223457899999999887665432 35678877533 23334333333333 4899987544444443
Q ss_pred CCCCcEEEEEeCCCCCccee-eecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCc
Q 004368 351 ELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDP 428 (758)
Q Consensus 351 ~~~~~~L~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~ 428 (758)
..+...+... ..... +..+. ..+..+.+..+ .+++....++. +++|++.. |+....+... .+....+
T Consensus 170 ----~~v~lwd~~~-~~~~~~l~~H~--~~V~~v~fspdg~~las~s~D~~--i~lwd~~~-g~~~~~~~~~-~~~~~~h 238 (611)
T 1nr0_A 170 ----NTVAIFEGPP-FKFKSTFGEHT--KFVHSVRYNPDGSLFASTGGDGT--IVLYNGVD-GTKTGVFEDD-SLKNVAH 238 (611)
T ss_dssp ----SCEEEEETTT-BEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSC--EEEEETTT-CCEEEECBCT-TSSSCSS
T ss_pred ----CeEEEEECCC-CeEeeeecccc--CceEEEEECCCCCEEEEEECCCc--EEEEECCC-CcEeeeeccc-ccccccc
Confidence 2355556543 22122 32232 23556665543 34445666665 77888763 3322111000 0000012
Q ss_pred ccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 429 VYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 429 ~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
...+..+.+++++..++ +.+ .-..+..+|+.+++
T Consensus 239 ~~~V~~v~~spdg~~l~-s~s---~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 239 SGSVFGLTWSPDGTKIA-SAS---ADKTIKIWNVATLK 272 (611)
T ss_dssp SSCEEEEEECTTSSEEE-EEE---TTSEEEEEETTTTE
T ss_pred CCCEEEEEECCCCCEEE-EEe---CCCeEEEEeCCCCc
Confidence 22333455667776653 332 22578889988876
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-06 Score=91.31 Aligned_cols=192 Identities=14% Similarity=0.129 Sum_probs=115.0
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+..+.|||||++||.... ...|+++|+.+++.... .. ......++|+|||.++.+...+. .|.++++.+
T Consensus 125 ~~~~~~spdg~~l~~g~~-----dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg----~i~iwd~~~ 195 (321)
T 3ow8_A 125 AWTLAFSPDSQYLATGTH-----VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG----IINIFDIAT 195 (321)
T ss_dssp CCCEEECTTSSEEEEECT-----TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTS----CEEEEETTT
T ss_pred EEEEEECCCCCEEEEEcC-----CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCC----eEEEEECCC
Confidence 446799999999986543 23689999999876542 11 22356689999994444443322 478888876
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEEEcC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~ 349 (758)
+ +....+.... .....+.|+|||++|+..+.+ ..|.++|+.++.....+......+. ..|+|+|+.|+..+.+
T Consensus 196 ~--~~~~~~~~h~-~~v~~l~~spd~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D 269 (321)
T 3ow8_A 196 G--KLLHTLEGHA-MPIRSLTFSPDSQLLVTASDD---GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD 269 (321)
T ss_dssp T--EEEEEECCCS-SCCCEEEECTTSCEEEEECTT---SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred C--cEEEEEcccC-CceeEEEEcCCCCEEEEEcCC---CeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence 5 2333333322 223367899999988765433 3477788877652333433333333 3489999977665543
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcC
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~ 408 (758)
..|...|+.+......+..+. ..+..+.+..+ ..++....++. +++|+.+
T Consensus 270 -----~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~~~d~~--i~vwd~p 320 (321)
T 3ow8_A 270 -----KSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSVGDDQE--IHIYDCP 320 (321)
T ss_dssp -----SCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCC--EEEEECC
T ss_pred -----CcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEEeCCCe--EEEEeCC
Confidence 346677876532222233333 24556666654 34455666665 6677653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=6e-06 Score=88.20 Aligned_cols=160 Identities=9% Similarity=0.002 Sum_probs=88.2
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECC-CCceeec-cc--cCcceeEEEecCCe--EEEEEeCC-----CC---
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE-TGTPVGK-PL--VGVTASVEWAGNEA--LVYITMDE-----IL--- 258 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~-~g~~~~~-~~--~~~~~~~~wspDg~--l~y~~~~~-----~~--- 258 (758)
...+.|||||++|+.+.. . .|.+++++ +|+.... .. .+....++|+|||+ ++|+.... ..
T Consensus 42 ~~~~a~spdg~~l~~~~~-~-----~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAM-K-----KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CSEEEECTTSSEEEEEEB-T-----EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CcEEEECCCCCEEEEEcc-c-----eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 446789999998854433 2 68888887 7776432 21 13234479999994 34554200 00
Q ss_pred -CCceEEEEEcCCCCCCcEE--EeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCC-CCCceEEeecc-----c
Q 004368 259 -RPDKAWLHKLEADQSNDIC--LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS-KPEELRVLTPR-----V 329 (758)
Q Consensus 259 -~~~~v~~~~l~~~~~~~~~--v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~-~~~~~~~l~~~-----~ 329 (758)
....+..+++......... .+.........++.|||||++|++... +...|++++++ +++ +..+... .
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~--~~~~v~~~~~~~~g~-~~~~~~~~~~~~g 192 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL--TANKLWTHRKLASGE-VELVGSVDAPDPG 192 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSC-EEEEEEEECSSTT
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC--CCCEEEEEEECCCCC-EEEeeeEecCCCC
Confidence 1224566666532111111 111112223446889999999876532 23568888887 665 4332111 1
Q ss_pred cce-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCC
Q 004368 330 VGV-DTAASHRGNHFFITRRSDELFNSELLACPVD 363 (758)
Q Consensus 330 ~~~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~ 363 (758)
.+. ...|+|||+++|+....+ ....++.++.+
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~--~~v~v~~~~~~ 225 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAG--NRICEYVIDPA 225 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTT--TEEEEEEECTT
T ss_pred CCCCEeEECCCCCEEEEEECCC--CeEEEEEEeCC
Confidence 222 235999999988775543 23445555543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-05 Score=82.87 Aligned_cols=250 Identities=9% Similarity=0.042 Sum_probs=136.6
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc--ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
...++.|+|||+ |.++.. .+ ..|+++|+++++..... ......+++|+|||.+++...........|++++..
T Consensus 46 ~~~~~~~~~~g~-l~~~~~-~~---~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 46 QLEGLNFDRQGQ-LFLLDV-FE---GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp CEEEEEECTTSC-EEEEET-TT---CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred cccCcEECCCCC-EEEEEC-CC---CEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC
Confidence 356889999999 333322 22 37999999998876532 123356689999997766654332222468888876
Q ss_pred CCCCCcEEEeee-cCCceeeEEEEcCCCcEEEEEecC----CcceEEEEEeCCCCCceEEeeccccce-eeEEeecCCEE
Q 004368 270 ADQSNDICLYHE-KDDIYSLGLQASESKKFLFIASES----KITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHF 343 (758)
Q Consensus 270 ~~~~~~~~v~~~-~~~~~~~~~~~S~Dg~~l~~~s~~----~~~~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg~~l 343 (758)
++. ...++.. .......++.++|||+.++ .... .....||.+|.++++ ...+....... ...|++||+.+
T Consensus 121 ~~~--~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~~dg~~l 196 (333)
T 2dg1_A 121 GDN--LQDIIEDLSTAYCIDDMVFDSKGGFYF-TDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVL 196 (333)
T ss_dssp SCS--CEEEECSSSSCCCEEEEEECTTSCEEE-EECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEE
T ss_pred CCE--EEEEEccCccCCcccceEECCCCCEEE-EeccccccCCCceEEEEeCCCCE-EEEeecCCCcccceEECCCCCEE
Confidence 653 2222221 1122334678999997544 3322 124679999988765 55443322222 23489999988
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCc-ce----e-eecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCcccc
Q 004368 344 FITRRSDELFNSELLACPVDNTSE-TT----V-LIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKS 416 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~-~~----~-l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~ 416 (758)
|+....+ ..|++++++..+. .. . .........+.++.++.+ .+++....++ .|.+++.+ |+.+
T Consensus 197 ~v~~~~~----~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~--~v~~~d~~--g~~~-- 266 (333)
T 2dg1_A 197 WVTETTA----NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG--RVLVFNKR--GYPI-- 266 (333)
T ss_dssp EEEEGGG----TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT--EEEEECTT--SCEE--
T ss_pred EEEeCCC----CeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCC--EEEEECCC--CCEE--
Confidence 8876543 4688888753111 11 1 111111124556777764 3444443333 46667653 5432
Q ss_pred ccCCceeeccCcc-c---ccCCCCcccCCcEEEEEEecC--CCCCEEEEEECCC
Q 004368 417 LQGGKSVEFIDPV-Y---SIDPSESVFSSRILRFHYSSL--RTPPSVYDYDMDM 464 (758)
Q Consensus 417 l~~~~~i~~p~~~-~---~i~~~~~~~d~~~l~~~~sS~--~~P~~i~~~d~~~ 464 (758)
..+..+... + .+....++++++.++++.+.- .....+|+++...
T Consensus 267 ----~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 267 ----GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp ----EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred ----EEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEeccc
Confidence 223222210 0 122233445666776665542 2345778777643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=7.5e-06 Score=89.00 Aligned_cols=238 Identities=12% Similarity=0.072 Sum_probs=134.7
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++|+-+.. + ..|+|||+.+++.... . -.+....++|+|||.++.+...+. .|.++++.
T Consensus 110 ~V~~~~~~p~~~~l~s~s~-D----g~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~----~i~iwd~~ 180 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASE-D----ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM----TIKLWDFQ 180 (410)
T ss_dssp CEEEEEECSSSSEEEEEES-S----SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS----CCCEEETT
T ss_pred cEEEEEEcCCCCEEEEEeC-C----CeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCC----eEEEEeCC
Confidence 4678899999999875543 2 3699999999886542 1 122356689999995555554332 25566776
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEEc
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRR 348 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~ 348 (758)
+. +....+... ......+.|+|||++|+..+.+ ..|.++|+.++.....+......+.. .++++|..|+..+.
T Consensus 181 ~~--~~~~~~~~h-~~~V~~v~~~p~~~~l~s~s~D---~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~ 254 (410)
T 1vyh_C 181 GF--ECIRTMHGH-DHNVSSVSIMPNGDHIVSASRD---KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254 (410)
T ss_dssp SS--CEEECCCCC-SSCEEEEEECSSSSEEEEEETT---SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CC--ceeEEEcCC-CCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC
Confidence 54 222233322 2234468899999988755433 35778898877633444444333333 37888887665554
Q ss_pred CCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC---------------------CEEEEEEEeCCeeEEEEEEc
Q 004368 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI---------------------DHLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------------------~~l~~~~~~~g~~~l~v~~l 407 (758)
+ ..|..+++.+......+..+. ..+..+.+.. +.++++...++. +++|++
T Consensus 255 D-----~~v~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~--i~iwd~ 325 (410)
T 1vyh_C 255 D-----QTVRVWVVATKECKAELREHR--HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT--IKMWDV 325 (410)
T ss_dssp T-----SCEEEEETTTCCEEEEECCCS--SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE--EEEEET
T ss_pred C-----CeEEEEECCCCceeeEecCCC--ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe--EEEEEC
Confidence 3 246666765422222232222 2344444443 234556666664 778888
Q ss_pred CCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 408 PAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 408 ~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.. +..+ ..+..+...+..+.+++++..++ +.+ .-..+..+|+.+++
T Consensus 326 ~~-~~~~--------~~~~~h~~~v~~v~~~~~g~~l~-s~s---~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 326 ST-GMCL--------MTLVGHDNWVRGVLFHSGGKFIL-SCA---DDKTLRVWDYKNKR 371 (410)
T ss_dssp TT-TEEE--------EEEECCSSCEEEEEECSSSSCEE-EEE---TTTEEEEECCTTSC
T ss_pred CC-CceE--------EEEECCCCcEEEEEEcCCCCEEE-EEe---CCCeEEEEECCCCc
Confidence 73 3211 11222222233344556665543 332 22467788877665
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.8e-06 Score=90.54 Aligned_cols=198 Identities=13% Similarity=0.155 Sum_probs=106.4
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCc---eeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT---PVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~---~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
+..+.|||||++|+++...+| .|+++|+..|. .... ........++|+|||..+|+.... ...|+++++
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~v~~~d~ 158 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAG----NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK---QDRICLFTV 158 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTT----EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG---GTEEEEEEE
T ss_pred CcEEEEcCCCCEEEEEecCCC----eEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC---CCEEEEEEe
Confidence 457789999999887765444 57888884332 2221 112224568999999433444311 125888888
Q ss_pred CCCCCCcEE----EeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCC--CCCceE---Eeeccccc------e-
Q 004368 269 EADQSNDIC----LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS--KPEELR---VLTPRVVG------V- 332 (758)
Q Consensus 269 ~~~~~~~~~----v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~--~~~~~~---~l~~~~~~------~- 332 (758)
.+.. +... ............+.|+|||++|++..... ..+.+++++ ++. +. .+.....+ .
T Consensus 159 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~--~~i~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T 1ri6_A 159 SDDG-HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN--SSVDVWELKDPHGN-IECVQTLDMMPENFSDTRWAA 234 (343)
T ss_dssp CTTS-CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT--TEEEEEESSCTTSC-CEEEEEEECSCTTCCSCCCEE
T ss_pred cCCC-ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC--CEEEEEEecCCCCc-EEEEeeccccCccccccCCcc
Confidence 7622 1111 11211122233578999999988765433 356666764 343 22 22111111 1
Q ss_pred eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCC-Cccee--eecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEc
Q 004368 333 DTAASHRGNHFFITRRSDELFNSELLACPVDNT-SETTV--LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 333 ~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~-~~~~~--l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l 407 (758)
...|+|+|+.||+....+ ..|.+++++.. +..+. .++.... +..+.+. ++.+++....++ .+.+|++
T Consensus 235 ~i~~s~dg~~l~v~~~~~----~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~--~v~v~~~ 306 (343)
T 1ri6_A 235 DIHITPDGRHLYACDRTA----SLITVFSVSEDGSVLSKEGFQPTETQ--PRGFNVDHSGKYLIAAGQKSH--HISVYEI 306 (343)
T ss_dssp EEEECTTSSEEEEEETTT----TEEEEEEECTTSCCEEEEEEEECSSS--CCCEEECTTSSEEEEECTTTC--EEEEEEE
T ss_pred ceEECCCCCEEEEEecCC----CEEEEEEEcCCCCceEEeeeecCCCc--cceEEECCCCCEEEEecCCCC--eEEEEEE
Confidence 245999999887665433 45666666521 12222 2332222 4455655 455655443444 4667766
Q ss_pred CC
Q 004368 408 PA 409 (758)
Q Consensus 408 ~~ 409 (758)
+.
T Consensus 307 d~ 308 (343)
T 1ri6_A 307 VG 308 (343)
T ss_dssp ET
T ss_pred cC
Confidence 53
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.65 E-value=9.9e-07 Score=94.13 Aligned_cols=200 Identities=12% Similarity=0.084 Sum_probs=117.6
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-cCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+..+.|||||++|+-... +| .|++||+.+++.... .. .+....++|+|++ .++.+...+. .|.++++
T Consensus 141 ~V~~v~~spdg~~l~sgs~-dg----~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg----~v~~wd~ 211 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGK-DF----SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG----RILLWDT 211 (357)
T ss_dssp CEEEEEECSSSSEEEEEET-TS----CEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTS----CEEECCT
T ss_pred CEEEEEECCCCCEEEEEeC-CC----eEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCC----ceEEEEC
Confidence 4678899999999986543 23 599999999887653 11 2235668999998 5555554322 3777788
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITR 347 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s 347 (758)
.++.......+. ........+.|+|++..+++..... ..|.++|+.+++..+.+......+.. .|+|+|+.+++..
T Consensus 212 ~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~~la~g~~d--~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 212 RKPKPATRIDFC-ASDTIPTSVTWHPEKDDTFACGDET--GNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp TSSSCBCBCCCT-TCCSCEEEEEECTTSTTEEEEEESS--SCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEE
T ss_pred CCCceeeeeeec-cccccccchhhhhcccceEEEeecc--cceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEE
Confidence 766321111111 1223345688999876555443322 34777888876634444434334433 4899987665554
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCCCCC
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
..+ ..|..+|+.+. .......+.. .+..+.+. ...++++...++. |.+|+++..++
T Consensus 289 s~D----~~i~iwd~~~~-~~~~~~~H~~--~V~~vafsP~d~~~l~s~s~Dg~--v~iW~~~~~~~ 346 (357)
T 4g56_B 289 SED----CTVAVLDADFS-EVFRDLSHRD--FVTGVAWSPLDHSKFTTVGWDHK--VLHHHLPSEGR 346 (357)
T ss_dssp ETT----SCEEEECTTSC-EEEEECCCSS--CEEEEEECSSSTTEEEEEETTSC--EEEEECC----
T ss_pred eCC----CEEEEEECCCC-cEeEECCCCC--CEEEEEEeCCCCCEEEEEcCCCe--EEEEECCCCCc
Confidence 443 35777787652 2222334433 45566664 3445566777775 77888875443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-06 Score=91.00 Aligned_cols=116 Identities=15% Similarity=0.208 Sum_probs=71.9
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccC-------cceeEEEecCC-eEEEEEeC-------C
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG-------VTASVEWAGNE-ALVYITMD-------E 256 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~-------~~~~~~wspDg-~l~y~~~~-------~ 256 (758)
...+.|||||++++++....+ +|+++|+++++.... .... ....++|+||| .+++...+ .
T Consensus 45 ~~~~~~s~dg~~~~v~~~~~~----~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 120 (349)
T 1jmx_B 45 PGTAMMAPDNRTAYVLNNHYG----DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 120 (349)
T ss_dssp SCEEEECTTSSEEEEEETTTT----EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CceeEECCCCCEEEEEeCCCC----cEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccc
Confidence 346789999998876664333 699999999887642 2222 14568999999 56555432 0
Q ss_pred CCCCceEEEEEcCCCCC-CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 257 ILRPDKAWLHKLEADQS-NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 257 ~~~~~~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
......|+++++.++.. +....+.. +.....+.|+|||+ |++.. .+|+++|+.+++
T Consensus 121 ~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~-l~~~~-----~~i~~~d~~~~~ 177 (349)
T 1jmx_B 121 VVKPPRLEVFSTADGLEAKPVRTFPM--PRQVYLMRAADDGS-LYVAG-----PDIYKMDVKTGK 177 (349)
T ss_dssp EECCCEEEEEEGGGGGGBCCSEEEEC--CSSCCCEEECTTSC-EEEES-----SSEEEECTTTCC
T ss_pred ccCCCeEEEEECCCccccceeeeccC--CCcccceeECCCCc-EEEcc-----CcEEEEeCCCCc
Confidence 00124688889876421 11122222 22233567999999 66632 238889987765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-06 Score=90.02 Aligned_cols=162 Identities=10% Similarity=0.148 Sum_probs=89.6
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECC--CC----c-ee------eccc--cCcceeEEEecCCeEEEEEeCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE--TG----T-PV------GKPL--VGVTASVEWAGNEALVYITMDEI 257 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~--~g----~-~~------~~~~--~~~~~~~~wspDg~l~y~~~~~~ 257 (758)
...+.|||||++|+++....+ .|++++++ ++ + .. .... ......++|+|||+++|+....
T Consensus 157 ~~~~~~spdg~~l~~~~~~~~----~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~- 231 (361)
T 3scy_A 157 LHCVRITPDGKYLLADDLGTD----QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI- 231 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTT----EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-
T ss_pred ceEEEECCCCCEEEEEeCCCC----EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-
Confidence 456899999999877654222 45556554 43 2 21 1111 1224568999999555555422
Q ss_pred CCCceEEEEEcCCCCCCcEEEeee-c-CCceeeEEEEcCCCcEEEEEecC-CcceEEEEEeCCCCCceEEeeccc--cc-
Q 004368 258 LRPDKAWLHKLEADQSNDICLYHE-K-DDIYSLGLQASESKKFLFIASES-KITRFVFYLDVSKPEELRVLTPRV--VG- 331 (758)
Q Consensus 258 ~~~~~v~~~~l~~~~~~~~~v~~~-~-~~~~~~~~~~S~Dg~~l~~~s~~-~~~~~l~~~d~~~~~~~~~l~~~~--~~- 331 (758)
...|.++++.++..+....... . .......+.|||||++|++.... .+.-.+|.++..++. ++.+.... ..
T Consensus 232 --~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~-~~~~~~~~~g~~~ 308 (361)
T 3scy_A 232 --GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT-LTKVGYQLTGIHP 308 (361)
T ss_dssp --TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC-EEEEEEEECSSCC
T ss_pred --CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc-EEEeeEecCCCCC
Confidence 2247777766442111111111 1 11112367899999998776544 444556666655655 43332211 11
Q ss_pred eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 332 VDTAASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 332 ~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
....|+|||++||+....+ ....++.+|.++
T Consensus 309 ~~~~~spdg~~l~~~~~~~--~~v~v~~~d~~~ 339 (361)
T 3scy_A 309 RNFIITPNGKYLLVACRDT--NVIQIFERDQAT 339 (361)
T ss_dssp CEEEECTTSCEEEEEETTT--TEEEEEEECTTT
T ss_pred ceEEECCCCCEEEEEECCC--CCEEEEEEECCC
Confidence 2345999999888776543 245677777654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-05 Score=83.20 Aligned_cols=242 Identities=13% Similarity=0.095 Sum_probs=133.1
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++||-... +| .|+|||+.+++.... .. ......++|+|||.++++...+ ..+.++++.
T Consensus 57 ~v~~~~~s~d~~~l~s~s~-Dg----~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----~~v~iw~~~ 127 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQ-DG----KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD----NICSIYNLK 127 (340)
T ss_dssp CEEEEEECTTSSEEEEEET-TT----EEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETT----CEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEeC-CC----cEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCC----CeEEEEECc
Confidence 3667899999999875443 33 699999999886542 22 2235568999999544444432 247777877
Q ss_pred CCCCCcEEEee-ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEEE
Q 004368 270 ADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITR 347 (758)
Q Consensus 270 ~~~~~~~~v~~-~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s 347 (758)
+.......... .........+.|+++++ |+..+.+ ..|.++|+.+++....+......+. ..|+|+++.++..+
T Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d---~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD---TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp TCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT---SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC---CcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 65322222211 12223344567888887 3333322 3467778887652333333333333 34899988665544
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeecc
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFI 426 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p 426 (758)
.+ ..|..+|+........+..+.. .+..+.+..+ .++++...++. +++|++.. +..+ ..+..+
T Consensus 204 ~d-----~~v~~wd~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~s~d~~--v~iwd~~~-~~~~------~~~~~~ 267 (340)
T 1got_B 204 CD-----ASAKLWDVREGMCRQTFTGHES--DINAICFFPNGNAFATGSDDAT--CRLFDLRA-DQEL------MTYSHD 267 (340)
T ss_dssp TT-----SCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSEEEEEETTSC--EEEEETTT-TEEE------EEECCT
T ss_pred CC-----CcEEEEECCCCeeEEEEcCCcC--CEEEEEEcCCCCEEEEEcCCCc--EEEEECCC-CcEE------EEEccC
Confidence 33 3566778765322222333332 3556666543 34445566664 77888873 2211 111111
Q ss_pred CcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 427 DPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 427 ~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.....+..+.+++++..+..... -..+..+|..+++
T Consensus 268 ~~~~~v~~~~~s~~g~~l~~g~~----d~~i~vwd~~~~~ 303 (340)
T 1got_B 268 NIICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKAD 303 (340)
T ss_dssp TCCSCEEEEEECTTSSEEEEEET----TSEEEEEETTTCC
T ss_pred CcccceEEEEECCCCCEEEEECC----CCeEEEEEcccCc
Confidence 11112333455677766544332 2578888887766
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.1e-08 Score=107.82 Aligned_cols=111 Identities=9% Similarity=0.002 Sum_probs=81.5
Q ss_pred CCCCEEEEecCCCccCCCCCCCh-HHHHHHHc-CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNS-SRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~-G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 591 (758)
...|+||++||..+.. ...|.. ....|+++ ||.|+++|.||+|...... .. ..-....+|+.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G~G~S~~~~--~~--~~~~~~~~dl~~li~~L~~~~g 142 (452)
T 1bu8_A 68 LDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRRGSRTEYTQ--AS--YNTRVVGAEIAFLVQVLSTEMG 142 (452)
T ss_dssp TTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHHHHSSCHHH--HH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechhcccCchhH--hH--hhHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999966543 233544 34667764 9999999999988754211 11 1111234678888888876544
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
++.+++.++|||+||.+++.++.++|++++++++..|.
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa 180 (452)
T 1bu8_A 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPA 180 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred CCccceEEEEEChhHHHHHHHHHhcccccceEEEecCC
Confidence 56799999999999999999999999999999987764
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5e-08 Score=110.58 Aligned_cols=129 Identities=19% Similarity=0.253 Sum_probs=85.5
Q ss_pred CCCCeEEEEEEEeeccccc---cCCCCCEEEEecCCCccCCC-CCCChHHHHHHHc-CcEEEEEecCCCCCCchhHHhcc
Q 004368 493 ASDGTQIPICIVYRKNLVK---LDGSDPLLLYGYGSYEICND-PAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENG 567 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~---~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G~~~~~~~ 567 (758)
|.|. +.+.++.|+.. . .+++.|+||++|||...... ..|.. ..|+++ |++|+.+|||-+. +| |....
T Consensus 108 sEdc--L~l~v~~P~~~-~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~--~~la~~~~~vvv~~~YRl~~-~G--fl~~~ 179 (574)
T 3bix_A 108 SEDC--LYLNIYVPTED-DIRDSGGPKPVMVYIHGGSYMEGTGNLYDG--SVLASYGNVIVITVNYRLGV-LG--FLSTG 179 (574)
T ss_dssp CSCC--CEEEEEEEC---------CCEEEEEECCCSSSSSCCGGGSCC--HHHHHHHTCEEEEECCCCHH-HH--HCCCS
T ss_pred CCcC--CEEEEEECCCC-CcCCCCCCCcEEEEECCCcccCCCCCccCc--hhhhccCCEEEEEeCCcCcc-cc--cCcCC
Confidence 4565 44555667643 2 23568999999998443322 22433 456665 7999999999532 00 00000
Q ss_pred -cccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhCC---CceeEEEEcCCc
Q 004368 568 -KFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVAAVPF 629 (758)
Q Consensus 568 -~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~~~ 629 (758)
....+...+.|..+|++|+.++ -..||++|.|+|.|+||.++..++.... .+|+++|+.+|.
T Consensus 180 ~~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 180 DQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 0122345689999999999875 2469999999999999999988887543 589999998863
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-05 Score=82.17 Aligned_cols=234 Identities=10% Similarity=0.018 Sum_probs=131.9
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc-cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
..++.|+|||+.|.++....+ .|+++|.+++ ...... .+...+++++|||.++..... ...|++++..++
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~----~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~----~~~i~~~d~~~g 100 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQN----RTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHG----LRRLERQREPGG 100 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGT----EEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETT----TTEEEEECSTTC
T ss_pred ccCCeEeCCCCEEEEEeCCCC----EEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecC----CCeEEEEcCCCC
Confidence 457899999997777665444 6999999988 443322 233566899999977555422 235888887655
Q ss_pred CCCcEEEeeecCC---ceeeEEEEcCCCcEEEEEecC---------------CcceEEEEEeCCCCCceEEeeccccc-e
Q 004368 272 QSNDICLYHEKDD---IYSLGLQASESKKFLFIASES---------------KITRFVFYLDVSKPEELRVLTPRVVG-V 332 (758)
Q Consensus 272 ~~~~~~v~~~~~~---~~~~~~~~S~Dg~~l~~~s~~---------------~~~~~l~~~d~~~~~~~~~l~~~~~~-~ 332 (758)
. ...+...... ....++.++|||+.+ ++... .....||.++.+ +. ...+...... .
T Consensus 101 ~--~~~~~~~~~~~~~~~~~~i~~d~~G~l~-vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~ 175 (296)
T 3e5z_A 101 E--WESIADSFEGKKLNSPNDVCLAPDGSLW-FSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPN 175 (296)
T ss_dssp C--EEEEECEETTEECCCCCCEEECTTSCEE-EEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEE
T ss_pred c--EEEEeeccCCCCCCCCCCEEECCCCCEE-EECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCc
Confidence 2 2222221111 112257789999854 43211 123589999987 44 5544433222 1
Q ss_pred eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcc---eeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcC
Q 004368 333 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSET---TVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 333 ~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~ 408 (758)
...|+|||+.+ +.... ..+|++++++..+.. ..++ ......+.++.++.+ .+++.. ++ .|.+|+.+
T Consensus 176 gi~~s~dg~~l-v~~~~----~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~--~v~~~~~~ 245 (296)
T 3e5z_A 176 GLAFLPSGNLL-VSDTG----DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GD--GVHVLTPD 245 (296)
T ss_dssp EEEECTTSCEE-EEETT----TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TT--EEEEECTT
T ss_pred cEEECCCCCEE-EEeCC----CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CC--eEEEECCC
Confidence 23489999977 44332 257888887522222 2233 222333456777754 444444 33 36677654
Q ss_pred CCCCccccccCCceeeccCcccccCCCCc-ccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 409 AVGEPLKSLQGGKSVEFIDPVYSIDPSES-VFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 409 ~~g~~~~~l~~~~~i~~p~~~~~i~~~~~-~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
|+.+ ..+..+.. +....+ .++++.++++-. ..+|++++.+++
T Consensus 246 --g~~~------~~~~~~~~---~~~~~f~~~d~~~L~v~t~-----~~l~~~~~~~~~ 288 (296)
T 3e5z_A 246 --GDEL------GRVLTPQT---TSNLCFGGPEGRTLYMTVS-----TEFWSIETNVRG 288 (296)
T ss_dssp --SCEE------EEEECSSC---CCEEEEESTTSCEEEEEET-----TEEEEEECSCCB
T ss_pred --CCEE------EEEECCCC---ceeEEEECCCCCEEEEEcC-----CeEEEEEccccc
Confidence 5532 22333321 222223 356667766543 379999988776
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-05 Score=84.44 Aligned_cols=120 Identities=12% Similarity=0.003 Sum_probs=71.6
Q ss_pred EECCCCCEEEEEEeCCCCeEE-EEEEEECCCCceeecccc-CcceeEEEecCCeEEEEEeC------CCCCCceEEEEEc
Q 004368 197 QVSPDNKLVAYAEDTKGDEIY-TVYVIDIETGTPVGKPLV-GVTASVEWAGNEALVYITMD------EILRPDKAWLHKL 268 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~-~l~v~dl~~g~~~~~~~~-~~~~~~~wspDg~l~y~~~~------~~~~~~~v~~~~l 268 (758)
..+|||++ +|..+..+.... .|+++|+++++.+.. ++ +...++++||||+.+|+... ++.+...|..+++
T Consensus 27 ~~~~~~~~-~yv~~~~~~~~~~~v~v~D~~t~~~~~~-i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRR-SYINLPAHHSAIIQQWVLDAGSGSILGH-VNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCE-EEEeCCcccCCccEEEEEECCCCeEEEE-ecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 44689966 688775222112 899999999987653 32 22237999999955555532 1112345777787
Q ss_pred CCCCCCcEEEee-ecC---CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 269 EADQSNDICLYH-EKD---DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 269 ~~~~~~~~~v~~-~~~---~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
.+......+... ... ...-..+.+||||++|++.... ....|+++| ++++
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~-~~~~v~viD-~t~~ 158 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA-AGPAVGLVV-QGGS 158 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC-CCCeEEEEE-CCCC
Confidence 765321221111 000 0111256899999999886432 246789999 8876
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.60 E-value=7.8e-08 Score=99.24 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=76.9
Q ss_pred CCCCEEEEecCCCccCC---CCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcC
Q 004368 514 GSDPLLLYGYGSYEICN---DPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 590 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~---~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 590 (758)
++.|.||++||..+... ...|......|.++||.|+.+|+||.|... ...+++.+.++.+++.
T Consensus 5 ~~~~~vvlvHG~~~~~~~~~~~~~~~~~~~L~~~G~~v~~~d~~g~g~s~-------------~~~~~~~~~i~~~~~~- 70 (285)
T 1ex9_A 5 QTKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDTSE-------------VRGEQLLQQVEEIVAL- 70 (285)
T ss_dssp CCSSCEEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCSSSCHH-------------HHHHHHHHHHHHHHHH-
T ss_pred CCCCeEEEeCCCCCCccccccccHHHHHHHHHhCCCEEEEEeCCCCCCch-------------hhHHHHHHHHHHHHHH-
Confidence 45688999999766532 335777788999999999999999877532 1234555555554443
Q ss_pred CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 591 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 591 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
.+.+++.++|||+||.++..++.++|+.++++|+.++.
T Consensus 71 -~~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p 108 (285)
T 1ex9_A 71 -SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp -HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -hCCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCC
Confidence 13478999999999999999999999999999988774
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-05 Score=87.40 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=85.9
Q ss_pred ceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC--CCCCCcEEEeee-cCCceeeEEEEcCCCcEEEEEecCCcceEEEE
Q 004368 238 TASVEWAGNE-ALVYITMDEILRPDKAWLHKLE--ADQSNDICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVFY 313 (758)
Q Consensus 238 ~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~--~~~~~~~~v~~~-~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~ 313 (758)
...++|+||| .|+++...+ ..|.++++. ++ +....+.. ..+.....+.|+|||++|+..+. ...+++
T Consensus 105 v~~~~~s~d~~~l~~~~~~d----g~v~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---~g~v~~ 175 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSD----KSLLVFDVDKTSK--NVLKLRKRFCFSKRPNAISIAEDDTTVIIADK---FGDVYS 175 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGG----TEEEEEEECSSSS--SCEEEEEEEECSSCEEEEEECTTSSEEEEEET---TSEEEE
T ss_pred eEEEEEcCCCCEEEEEECCC----CeEEEEECcCCCC--ceeeeeecccCCCCceEEEEcCCCCEEEEEeC---CCcEEE
Confidence 4568999999 555665432 246677776 44 23334432 22333457889999999887644 345789
Q ss_pred EeCCCCCceE----Eeeccccceee-EEeec---CCEEEEEEcCCCCCCcEEEEEeCCCCCcceeee-cCCCCceeeeEE
Q 004368 314 LDVSKPEELR----VLTPRVVGVDT-AASHR---GNHFFITRRSDELFNSELLACPVDNTSETTVLI-PHRESVKLQDIQ 384 (758)
Q Consensus 314 ~d~~~~~~~~----~l~~~~~~~~~-~~s~d---g~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~-~~~~~~~~~~~~ 384 (758)
+++.++.... .+......+.. .|+|+ ++.|+..+. + ..|..+++........+. .+. ..+..+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-d----~~i~vwd~~~~~~~~~~~~~h~--~~v~~~~ 248 (450)
T 2vdu_B 176 IDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-D----EHIKISHYPQCFIVDKWLFGHK--HFVSSIC 248 (450)
T ss_dssp EETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET-T----SCEEEEEESCTTCEEEECCCCS--SCEEEEE
T ss_pred EecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC-C----CcEEEEECCCCceeeeeecCCC--CceEEEE
Confidence 9987765111 23333333333 48998 665554443 3 346666665422222222 232 2344555
Q ss_pred Ee-CCEEEEEEEeCCeeEEEEEEcCC
Q 004368 385 LF-IDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 385 ~~-~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+. ++.++ +...++ .+.+|++..
T Consensus 249 ~sd~~~l~-s~~~d~--~v~vwd~~~ 271 (450)
T 2vdu_B 249 CGKDYLLL-SAGGDD--KIFAWDWKT 271 (450)
T ss_dssp ECSTTEEE-EEESSS--EEEEEETTT
T ss_pred ECCCCEEE-EEeCCC--eEEEEECCC
Confidence 54 44444 555555 488999874
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.7e-07 Score=100.13 Aligned_cols=120 Identities=12% Similarity=0.030 Sum_probs=84.8
Q ss_pred CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHH------cCcEEEEEecCCCCCCchhHHhccc
Q 004368 495 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD------RGFIFAIAQIRGGGELGRQWYENGK 568 (758)
Q Consensus 495 dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~------~G~~v~~~~~RG~g~~G~~~~~~~~ 568 (758)
||.+|+.....+++ ...|.||++||.++... .|...+..|.+ .||.|+++|+||.|.+...-
T Consensus 93 ~g~~i~~~~~~~~~-----~~~~pllllHG~~~s~~--~~~~~~~~L~~~~~~~~~gf~vv~~DlpG~G~S~~~~----- 160 (408)
T 3g02_A 93 EGLTIHFAALFSER-----EDAVPIALLHGWPGSFV--EFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGPP----- 160 (408)
T ss_dssp TTEEEEEEEECCSC-----TTCEEEEEECCSSCCGG--GGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCSC-----
T ss_pred CCEEEEEEEecCCC-----CCCCeEEEECCCCCcHH--HHHHHHHHHhcccccccCceEEEEECCCCCCCCCCCC-----
Confidence 89888876443321 24577999999776543 36666677777 58999999999998765321
Q ss_pred ccCCcChHhHHHHHHHHHHHcCCCCCC-cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 569 FLKKKNTFTDFIACAEYLIKNCYCTKE-KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 569 ~~~~~~~~~D~~~~~~~l~~~~~~d~~-~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
.....+++++.+.+..|+++- ..+ ++.++|+|+||.++..++.++|++....+...++
T Consensus 161 -~~~~~~~~~~a~~~~~l~~~l--g~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~ 219 (408)
T 3g02_A 161 -LDKDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNM 219 (408)
T ss_dssp -SSSCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCC
T ss_pred -CCCCCCHHHHHHHHHHHHHHh--CCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCC
Confidence 112345677777666665542 234 8999999999999999999998876666655443
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4.4e-06 Score=95.47 Aligned_cols=242 Identities=12% Similarity=0.078 Sum_probs=134.7
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCC----ceeec-c-ccCc-ceeEEEec--CCeEEEEEeCCCCCCceE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG----TPVGK-P-LVGV-TASVEWAG--NEALVYITMDEILRPDKA 263 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g----~~~~~-~-~~~~-~~~~~wsp--Dg~l~y~~~~~~~~~~~v 263 (758)
+..+.|||||++||+..+ + .|.|+|++++ +.... . -.+. ...++|+| ||.++++...+ ..|
T Consensus 21 v~~~~~spdg~~l~~~~~--~----~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~d----g~v 90 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPCG--K----SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES----GKV 90 (615)
T ss_dssp CCCCEEETTTTEEEEEET--T----EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT----SEE
T ss_pred eeEEEECCCCCEEEEecC--C----eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCC----CEE
Confidence 567799999999999872 2 6999999988 54432 1 2334 56799999 99555554432 246
Q ss_pred EEEEcCCC------CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCc-ceEEEEEeCCCCCceEEeeccccceee-E
Q 004368 264 WLHKLEAD------QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI-TRFVFYLDVSKPEELRVLTPRVVGVDT-A 335 (758)
Q Consensus 264 ~~~~l~~~------~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~-~~~l~~~d~~~~~~~~~l~~~~~~~~~-~ 335 (758)
.++++.++ ..+....+... ......+.|+|||++|+....+.+ ...|+++|. ++....+......+.. .
T Consensus 91 ~vw~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~~~~~~~v~~~~ 167 (615)
T 1pgu_A 91 IVWGWTFDKESNSVEVNVKSEFQVL-AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSLGEVSGHSQRINACH 167 (615)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECC-SSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCEEEECCSCSSCEEEEE
T ss_pred EEEeCCCCcccccccccccchhhcc-cccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCcceeeecCCccEEEEE
Confidence 66666433 11122223222 223447889999999988765432 357788773 3224444444333333 4
Q ss_pred EeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCC-CceeeeEEEeCC--EEEEEEEeCCeeEEEEEEcCCCCC
Q 004368 336 ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE-SVKLQDIQLFID--HLAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 336 ~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~--~l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
|+|+++.+++....+ ..|..+++........+..+.. ...+..+.+..+ .++++...++. +.+|++.. ++
T Consensus 168 ~~~~~~~~l~~~~~d----~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vwd~~~-~~ 240 (615)
T 1pgu_A 168 LKQSRPMRSMTVGDD----GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK--ISCFDGKS-GE 240 (615)
T ss_dssp ECSSSSCEEEEEETT----TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC--EEEEETTT-CC
T ss_pred ECCCCCcEEEEEeCC----CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe--EEEEECCC-CC
Confidence 899998544444443 4677778765211111322222 003556666544 34445555654 77888864 33
Q ss_pred ccccccCCceeec-c---CcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 413 PLKSLQGGKSVEF-I---DPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 413 ~~~~l~~~~~i~~-p---~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
.+. .+ . .....+....++ ++..++. .+. -..+..+|+.+++.
T Consensus 241 ~~~--------~~~~~~~~~~~~v~~~~~~-~~~~l~~-~~~---d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 241 FLK--------YIEDDQEPVQGGIFALSWL-DSQKFAT-VGA---DATIRVWDVTTSKC 286 (615)
T ss_dssp EEE--------ECCBTTBCCCSCEEEEEES-SSSEEEE-EET---TSEEEEEETTTTEE
T ss_pred EeE--------EecccccccCCceEEEEEc-CCCEEEE-EcC---CCcEEEEECCCCcE
Confidence 221 12 1 111123233444 5555433 322 25788899887763
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.5e-08 Score=106.20 Aligned_cols=111 Identities=12% Similarity=-0.020 Sum_probs=80.6
Q ss_pred CCCCEEEEecCCCccCCCCCCCh-HHHHHHHc-CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNS-SRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~-G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 591 (758)
...|+||++||..+.. ...|.. ....|+++ ||.|+++|.||+|....... . ..-....+|+.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~G~S~~~~~--~--~~~~~~~~dl~~~i~~L~~~~g 142 (452)
T 1w52_X 68 SSRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSSGAKAEYTQA--V--QNIRIVGAETAYLIQQLLTELS 142 (452)
T ss_dssp TTSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHHHHTSCHHHH--H--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEecccccccccHHH--H--HhHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999965443 233544 44667765 99999999999887642111 1 0111234677778888875533
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
++.+++.++|||+||.+++.++.++|++++++|+..|.
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa 180 (452)
T 1w52_X 143 YNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPA 180 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccceeeEEecccc
Confidence 46789999999999999999999999999999988764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-05 Score=82.67 Aligned_cols=192 Identities=11% Similarity=0.075 Sum_probs=112.1
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQS 273 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~ 273 (758)
.++.|+||++.|.|+-...+ .|+++|+++++......+.....++|+|||.+++.. . ..|++++..++.
T Consensus 52 egp~~~~~~~~l~~~d~~~~----~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~-----~gl~~~d~~~g~- 120 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILER----ELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-D-----DGLFLRDTATGV- 120 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGT----EEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-T-----TEEEEEETTTCC-
T ss_pred cCCeEeCCCCEEEEEECCCC----EEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-C-----CCEEEEECCCCc-
Confidence 46899999988877654333 699999999876544444445668999999766554 2 248888886653
Q ss_pred CcEEEeeecC---CceeeEEEEcCCCcEEEEEecC----CcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEE
Q 004368 274 NDICLYHEKD---DIYSLGLQASESKKFLFIASES----KITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFI 345 (758)
Q Consensus 274 ~~~~v~~~~~---~~~~~~~~~S~Dg~~l~~~s~~----~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~ 345 (758)
...+..... .....++.+++||+. ++.... .....||.++ +++ .+.+...... ....|++||+.+|+
T Consensus 121 -~~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 121 -LTLHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVA--KGK-VTKLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp -EEEEECSSTTCTTEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEE--TTE-EEEEEEEESSEEEEEECTTSCEEEE
T ss_pred -EEEEeeCCCCCCCCCCCCEEECCCCCE-EEEeCCCcCCCCceEEEEEe--CCc-EEEeeCCCcccCCeEEcCCCCEEEE
Confidence 222322111 122346789999985 444322 1346899999 344 5444332211 12348999999988
Q ss_pred EEcCCCCCCcEEEEEeCC--CC-Cc--ceeeec-CCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEc
Q 004368 346 TRRSDELFNSELLACPVD--NT-SE--TTVLIP-HRESVKLQDIQLFID-HLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~--~~-~~--~~~l~~-~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l 407 (758)
.... +.+|++++++ +. .. .+.+.. ........++.++.+ .+++....++ .|.+++.
T Consensus 196 ~~~~----~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~--~v~~~d~ 258 (326)
T 2ghs_A 196 VDTK----VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG--AVDRYDT 258 (326)
T ss_dssp EETT----TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT--EEEEECT
T ss_pred EECC----CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCC--EEEEECC
Confidence 7543 2578888875 32 11 112221 112234566777764 3444433333 4666654
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-07 Score=99.19 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=79.3
Q ss_pred CCCCEEEEecCCCccCCC----CCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHc
Q 004368 514 GSDPLLLYGYGSYEICND----PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 589 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~----~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 589 (758)
++.|+||++||..+.... ..|......|.++||.|+.+|+||.|..... ....+++.+.++.+++.
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~l~~~L~~~G~~V~~~d~~g~g~s~~~----------~~~~~~l~~~i~~~l~~ 75 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGP----------NGRGEQLLAYVKTVLAA 75 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTTEESSTTHHHHHHHTTCCEEECCCCSSCCSSST----------TSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccchHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCCC----------CCCHHHHHHHHHHHHHH
Confidence 456789999997654411 4577788899999999999999998865321 13345666666655543
Q ss_pred CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 590 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 590 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
.+.+++.++|||+||.++..++.++|++++++|..++.
T Consensus 76 --~~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p 113 (320)
T 1ys1_X 76 --TGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTP 113 (320)
T ss_dssp --HCCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --hCCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCC
Confidence 23479999999999999999999999999999988774
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=3.9e-06 Score=89.70 Aligned_cols=206 Identities=11% Similarity=0.098 Sum_probs=108.0
Q ss_pred eEEECCCCCE-EEEEEeCC-----CC----eEEEEEEEECC-CCceeec-cc-----cCcceeEEEecCCeEEEEEeCCC
Q 004368 195 CFQVSPDNKL-VAYAEDTK-----GD----EIYTVYVIDIE-TGTPVGK-PL-----VGVTASVEWAGNEALVYITMDEI 257 (758)
Q Consensus 195 ~~~~SPDG~~-lAy~~~~~-----G~----e~~~l~v~dl~-~g~~~~~-~~-----~~~~~~~~wspDg~l~y~~~~~~ 257 (758)
.+.|||||++ ++|+.+.+ ++ ...++.+++++ .|+.... .. .....+++|||||+.+|+....
T Consensus 87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~- 165 (365)
T 1jof_A 87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT- 165 (365)
T ss_dssp GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-
T ss_pred cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC-
Confidence 4689999997 45555400 00 11257778876 4554321 11 1235568999999545555422
Q ss_pred CCCceEEEEEcC-CCCCCcEEEeeec--C-CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceE----Eee--c
Q 004368 258 LRPDKAWLHKLE-ADQSNDICLYHEK--D-DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR----VLT--P 327 (758)
Q Consensus 258 ~~~~~v~~~~l~-~~~~~~~~v~~~~--~-~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~----~l~--~ 327 (758)
...|+++++. ++. ...+.... . ...-..+.|||||++|++.......-.+|.+|.++++ +. .+. +
T Consensus 166 --~~~v~~~~~~~~g~--~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~-~~~~~~~~~~~~ 240 (365)
T 1jof_A 166 --ANKLWTHRKLASGE--VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM-PVYTHHSFPLIP 240 (365)
T ss_dssp --TTEEEEEEECTTSC--EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC-EEEEEEEEESSC
T ss_pred --CCEEEEEEECCCCC--EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCc-EEEccceEEcCC
Confidence 2368888887 442 22221111 1 2223357899999999876554444566666765654 32 121 1
Q ss_pred cc----c--------ceeeE-EeecCCEEEEEEcCCCC--CCcEEEEEeCCCCCccee---eec-CCCCceeeeEEE---
Q 004368 328 RV----V--------GVDTA-ASHRGNHFFITRRSDEL--FNSELLACPVDNTSETTV---LIP-HRESVKLQDIQL--- 385 (758)
Q Consensus 328 ~~----~--------~~~~~-~s~dg~~l~~~s~~~~~--~~~~L~~~~~~~~~~~~~---l~~-~~~~~~~~~~~~--- 385 (758)
.. . -.... |+|||++||+. +.+.. ....|.+++++..+.... .++ ......--.+++
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~-~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~ 319 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFAS-SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW 319 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE-EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEE-CCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc
Confidence 10 1 12345 89999988754 43211 112565666542123222 122 111112234667
Q ss_pred eCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 386 FIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 386 ~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
++++|++....+ ..+.+|+++.
T Consensus 320 dg~~l~v~~~~~--~~v~v~~~~~ 341 (365)
T 1jof_A 320 SDEWMAITDDQE--GWLEIYRWKD 341 (365)
T ss_dssp CTTEEEEECSSS--CEEEEEEEET
T ss_pred CCCEEEEEEcCC--CeEEEEEEch
Confidence 677876554333 3477888773
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.9e-05 Score=82.08 Aligned_cols=248 Identities=13% Similarity=0.117 Sum_probs=138.2
Q ss_pred EeeEEECCCC-CEEEEEEeCCCCeEEEEEEEECCCCceeec-c---ccCcceeEEEecC-CeEEEEEeCCCCCCceEEEE
Q 004368 193 VGCFQVSPDN-KLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P---LVGVTASVEWAGN-EALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 193 i~~~~~SPDG-~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~---~~~~~~~~~wspD-g~l~y~~~~~~~~~~~v~~~ 266 (758)
+..+.||||| ++||.... +| .|+|||+.+++.... . -.+....++|+|+ +.++++...+ ..|.++
T Consensus 76 v~~~~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~i~iw 146 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSK-GG----DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR----GATTLR 146 (383)
T ss_dssp EEEEEECSSCTTEEEEEEB-TS----CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT----TEEEEE
T ss_pred EEEEEECCCCCCEEEEEcC-CC----eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC----CEEEEE
Confidence 6678999999 77776654 33 599999998876543 2 1233567999995 5655555433 257888
Q ss_pred EcCCCCCCcEEEeeecC--CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEE
Q 004368 267 KLEADQSNDICLYHEKD--DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHF 343 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~--~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l 343 (758)
++.+. ....+.... ......+.|+||+++|+..+.+ ..|+++|+.+.. ...+......+.. .|+|+++.+
T Consensus 147 d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~-~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 147 DFSGS---VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST---GRLLLLGLDGHE-IFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp ETTSC---EEEEEECCCCSSCCEEEEEEETTTTEEEEEETT---SEEEEEETTSCE-EEEEECSSSCEEEEEECSSCTTE
T ss_pred ECCCC---ceEEEeccCCCCCCeEEEEECCCCCEEEEECCC---CCEEEEECCCCE-EEEeccCCCcEEEEEECCCCCCE
Confidence 88743 233333222 2334578899999988765443 467888885432 4555444444433 489999844
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCC---cceeeecCCCCceeeeEEEeC-C-EEEEEEEeCCeeEEEEEEcCCCCCcccccc
Q 004368 344 FITRRSDELFNSELLACPVDNTS---ETTVLIPHRESVKLQDIQLFI-D-HLAVYEREGGLQKITTYRLPAVGEPLKSLQ 418 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~-~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~ 418 (758)
++....+ ..|..+|+.... .......+. ..+..+.+.. + .++++...++ .+.+|++.. +..+..+.
T Consensus 220 l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~l~~~~~d~--~i~iwd~~~-~~~~~~~~ 290 (383)
T 3ei3_B 220 MATSSVD----ATVKLWDLRNIKDKNSYIAEMPHE--KPVNAAYFNPTDSTKLLTTDQRN--EIRVYSSYD-WSKPDQII 290 (383)
T ss_dssp EEEEETT----SEEEEEEGGGCCSTTCEEEEEECS--SCEEEEEECTTTSCEEEEEESSS--EEEEEETTB-TTSCSEEE
T ss_pred EEEEeCC----CEEEEEeCCCCCcccceEEEecCC--CceEEEEEcCCCCCEEEEEcCCC--cEEEEECCC-Cccccccc
Confidence 4444443 357777765421 111133333 3456666655 3 3444555555 478899874 22221111
Q ss_pred CCceeeccCcccccCCCCcccCCcEEEEEEe-----cCCCCCEEEEEECCCCcE
Q 004368 419 GGKSVEFIDPVYSIDPSESVFSSRILRFHYS-----SLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 419 ~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~s-----S~~~P~~i~~~d~~~~~~ 467 (758)
....... .....+. ..+.+++..+.+.++ +-..-..++.+|+.+++.
T Consensus 291 ~~~~~~~-~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 291 IHPHRQF-QHLTPIK-ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGL 342 (383)
T ss_dssp ECCBCCC-TTSCCCC-CEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCE
T ss_pred ccccccc-ccccceE-EeccCCCCceEEEecCCcccccCCCCeEEEEecCCCce
Confidence 0000000 0001111 234445555555543 223456788999888773
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-05 Score=83.67 Aligned_cols=154 Identities=15% Similarity=0.088 Sum_probs=89.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc---CcceeEEEecCCeEEEEEeCCCCCCceEEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~---~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~ 267 (758)
.+..++|||||++||-.... ..+.+||+.++..... .+. +....++|+|||.++++...+. .|++++
T Consensus 63 ~v~~~~~sp~g~~l~s~s~D-----~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~----~v~iwd 133 (345)
T 3fm0_A 63 TVRKVAWSPCGNYLASASFD-----ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK----SVWVWE 133 (345)
T ss_dssp CEEEEEECTTSSEEEEEETT-----SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEE
T ss_pred cEEEEEECCCCCEEEEEECC-----CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC----eEEEEE
Confidence 47788999999999866542 3588888887754321 222 2356699999995444544322 377777
Q ss_pred cCCCCCCc-EEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC--ceEEeecccccee-eEEeecCCEE
Q 004368 268 LEADQSND-ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVGVD-TAASHRGNHF 343 (758)
Q Consensus 268 l~~~~~~~-~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~-~~~s~dg~~l 343 (758)
+.++.... ...+.. .......+.|+|||++|+..+.+ +. |.++|..++. ....+......+. ..|+|+|+.|
T Consensus 134 ~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d-~~--i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l 209 (345)
T 3fm0_A 134 VDEEDEYECVSVLNS-HTQDVKHVVWHPSQELLASASYD-DT--VKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRL 209 (345)
T ss_dssp ECTTSCEEEEEEECC-CCSCEEEEEECSSSSCEEEEETT-SC--EEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCCCCCeEEEEEecC-cCCCeEEEEECCCCCEEEEEeCC-Cc--EEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEE
Confidence 76553211 112222 22234468899999987765543 23 4455555443 1122333333333 3489999987
Q ss_pred EEEEcCCCCCCcEEEEEe
Q 004368 344 FITRRSDELFNSELLACP 361 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~ 361 (758)
+..+.+. ..+|+...
T Consensus 210 ~s~s~D~---~v~iW~~~ 224 (345)
T 3fm0_A 210 ASCSDDR---TVRIWRQY 224 (345)
T ss_dssp EEEETTS---CEEEEEEE
T ss_pred EEEeCCC---eEEEeccc
Confidence 7665543 35666543
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=95.69 Aligned_cols=104 Identities=14% Similarity=0.001 Sum_probs=75.6
Q ss_pred CCCCEEEEecCCCccCCCCCCC-hHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFN-SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 592 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 592 (758)
+..+.||++||..+.. ...|. .....|.++||.|+.+|++|+|..... ...+++.+.++.+.+.-
T Consensus 63 ~~~~pVVLvHG~~~~~-~~~w~~~l~~~L~~~Gy~V~a~DlpG~G~~~~~-----------~~~~~la~~I~~l~~~~-- 128 (316)
T 3icv_A 63 SVSKPILLVPGTGTTG-PQSFDSNWIPLSAQLGYTPCWISPPPFMLNDTQ-----------VNTEYMVNAITTLYAGS-- 128 (316)
T ss_dssp BCSSEEEEECCTTCCH-HHHHTTTHHHHHHHTTCEEEEECCTTTTCSCHH-----------HHHHHHHHHHHHHHHHT--
T ss_pred CCCCeEEEECCCCCCc-HHHHHHHHHHHHHHCCCeEEEecCCCCCCCcHH-----------HHHHHHHHHHHHHHHHh--
Confidence 3456788899964432 12354 566788889999999999988643211 23467777888777652
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhC---CCceeEEEEcCCccc
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMR---PDLFKAAVAAVPFVD 631 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~~~~d 631 (758)
..+++.++||||||.++..++.++ +++++.+|+.+|...
T Consensus 129 g~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 129 GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred CCCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 237999999999999998877765 589999999887643
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=94.56 Aligned_cols=249 Identities=10% Similarity=0.082 Sum_probs=133.4
Q ss_pred EEeeEEECCCCCEEEEEEeCCC------CeEEEEEEEECCCCcee---ec-cccCcceeEEEecCC-eEEEEEeCCCCCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKG------DEIYTVYVIDIETGTPV---GK-PLVGVTASVEWAGNE-ALVYITMDEILRP 260 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G------~e~~~l~v~dl~~g~~~---~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~ 260 (758)
.+..++|||||+.++++.+..| +....|+|||+.+++.. .. ........++|+||+ .|+....+.
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---- 89 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNG---- 89 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSS----
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCC----
Confidence 4556799999995555554444 44568999999987632 21 222336679999999 454443332
Q ss_pred ceEEEEEcCCCCC--CcEEEeeecCCceeeEEEEcCC-CcEEEEEecCCcceEEEEEeCCCCC------ceEEe---ecc
Q 004368 261 DKAWLHKLEADQS--NDICLYHEKDDIYSLGLQASES-KKFLFIASESKITRFVFYLDVSKPE------ELRVL---TPR 328 (758)
Q Consensus 261 ~~v~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~S~D-g~~l~~~s~~~~~~~l~~~d~~~~~------~~~~l---~~~ 328 (758)
.|.++++.+... +....+.... .....+.|+|| +++|+..+.+ ..|+++|+.++. ....+ ...
T Consensus 90 -~v~vw~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 90 -SLELYSTNEANNAINSMARFSNHS-SSVKTVKFNAKQDNVLASGGNN---GEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp -CEEEECCSSTTSCCCEEEECCCSS-SCCCEEEECSSSTTBEEEECSS---SCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred -eEEEeecccccccccchhhccCCc-cceEEEEEcCCCCCEEEEEcCC---CeEEEEECCCCccccccccccccccccCC
Confidence 377777766211 1222333222 23346789998 6666544332 347777887653 11111 112
Q ss_pred cccee-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCC-----CceeeeEEEeCC--EEEEEEEeCC-e
Q 004368 329 VVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE-----SVKLQDIQLFID--HLAVYEREGG-L 399 (758)
Q Consensus 329 ~~~~~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~--~l~~~~~~~g-~ 399 (758)
...+. ..|++++..+++....+ ..|..+|+... .....+.... ...+..+.+..+ .+++....++ .
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~ 239 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSS----NFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDND 239 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSS----SCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS
T ss_pred CCCeeEEEeCCCCCcEEEEEcCC----CCEEEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCC
Confidence 22222 34899855555554443 45777888653 2222222211 334566666654 4555666554 2
Q ss_pred eEEEEEEcCCCCCccccccCCceeecc-CcccccCCCCccc-CCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 400 QKITTYRLPAVGEPLKSLQGGKSVEFI-DPVYSIDPSESVF-SSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 400 ~~l~v~~l~~~g~~~~~l~~~~~i~~p-~~~~~i~~~~~~~-d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
..+.+|++......... +. .....+..+.+++ ++..+ ++.+. -..+..+|+.+++
T Consensus 240 ~~i~~~d~~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~~l-~s~~~---dg~v~~wd~~~~~ 296 (416)
T 2pm9_A 240 PSILIWDLRNANTPLQT--------LNQGHQKGILSLDWCHQDEHLL-LSSGR---DNTVLLWNPESAE 296 (416)
T ss_dssp CCCCEEETTSTTSCSBC--------CCSCCSSCEEEEEECSSCSSCE-EEEES---SSEEEEECSSSCC
T ss_pred ceEEEEeCCCCCCCcEE--------eecCccCceeEEEeCCCCCCeE-EEEeC---CCCEEEeeCCCCc
Confidence 24788998742222211 11 1111233344555 44444 33332 3468888888776
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.56 E-value=5.1e-06 Score=95.50 Aligned_cols=198 Identities=13% Similarity=0.076 Sum_probs=110.8
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc---cCcceeEEEecCC-eEEEEEeCCCCCCceEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL---VGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~---~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~ 266 (758)
.+..++|||||++||-... ..+|+|||+.+++.... .+ .+....++|+||| .|+.... ...+...|+.+
T Consensus 61 ~v~~~~~spdg~~lasg~~-----d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~-~~~~~~~v~~w 134 (611)
T 1nr0_A 61 QTTVAKTSPSGYYCASGDV-----HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGE-GRERFGHVFLF 134 (611)
T ss_dssp CEEEEEECTTSSEEEEEET-----TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEEC-CSSCSEEEEET
T ss_pred ceEEEEECCCCcEEEEEeC-----CCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEEC-CCCceeEEEEe
Confidence 3678899999999986553 24699999976543211 22 2345679999999 5554443 22233356666
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFI 345 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~ 345 (758)
+.+.. ...+.. .......+.|+||+++++++...... |.++|..+++....+......+.. .|+|||+.|+.
T Consensus 135 d~~~~----~~~l~g-h~~~v~~v~f~p~~~~~l~s~s~D~~--v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las 207 (611)
T 1nr0_A 135 DTGTS----NGNLTG-QARAMNSVDFKPSRPFRIISGSDDNT--VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 207 (611)
T ss_dssp TTCCB----CBCCCC-CSSCEEEEEECSSSSCEEEEEETTSC--EEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred eCCCC----cceecC-CCCCceEEEECCCCCeEEEEEeCCCe--EEEEECCCCeEeeeeccccCceEEEEECCCCCEEEE
Confidence 64432 112222 22334578899999875555554444 455566554322333333333433 49999997765
Q ss_pred EEcCCCCCCcEEEEEeCCCCCcceeeecC-----CCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 346 TRRSDELFNSELLACPVDNTSETTVLIPH-----RESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
.+.+ ..|...++.+......+... .....+..+.+..+ ..+++...++. +++|++..
T Consensus 208 ~s~D-----~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~--v~lWd~~~ 270 (611)
T 1nr0_A 208 TGGD-----GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT--IKIWNVAT 270 (611)
T ss_dssp EETT-----SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE--EEEEETTT
T ss_pred EECC-----CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe--EEEEeCCC
Confidence 5543 34666676542221112110 12234556666543 33445566664 77888763
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.55 E-value=7.7e-06 Score=88.41 Aligned_cols=200 Identities=11% Similarity=0.081 Sum_probs=120.2
Q ss_pred EEeeEEECC-CCCEEEEEEeCCCCeEEEEEEEECCCCce-------eec-c-ccCcceeEEEecCC-eEEEEEeCCCCCC
Q 004368 192 SVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTP-------VGK-P-LVGVTASVEWAGNE-ALVYITMDEILRP 260 (758)
Q Consensus 192 ~i~~~~~SP-DG~~lAy~~~~~G~e~~~l~v~dl~~g~~-------~~~-~-~~~~~~~~~wspDg-~l~y~~~~~~~~~ 260 (758)
.+..+.||| |+++||.... + ..|+|||+.++.. ... . -......++|+||+ .++++...+.
T Consensus 83 ~V~~~~~~p~~~~~l~s~s~-d----g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg--- 154 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGSE-D----CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN--- 154 (402)
T ss_dssp CEEEEEECTTCTTEEEEEET-T----SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS---
T ss_pred CEEEEEeCCCCCCEEEEEeC-C----CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC---
Confidence 577899999 8998876653 3 3699999998742 211 1 12235669999998 6777765432
Q ss_pred ceEEEEEcCCCCCCcEEEee-ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEe-eccccc--eeeEE
Q 004368 261 DKAWLHKLEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL-TPRVVG--VDTAA 336 (758)
Q Consensus 261 ~~v~~~~l~~~~~~~~~v~~-~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l-~~~~~~--~~~~~ 336 (758)
.|.++++.++ +....+. .........+.|+|||++|+..+.+ ..|.++|+.+++....+ ...... ....|
T Consensus 155 -~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 155 -VILVWDVGTG--AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD---KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF 228 (402)
T ss_dssp -CEEEEETTTT--EEEEEECTTTCCSCEEEEEECTTSSCEEEEETT---SEEEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred -EEEEEECCCC--CccEEEecCCCCCceEEEEECCCCCEEEEEecC---CcEEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence 4888888876 3333331 2223344578899999998876543 45888899876523333 222221 23458
Q ss_pred eecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceee--ecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 337 SHRGNHFFITRRSDELFNSELLACPVDNTSETTVL--IPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 337 s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+++|+.|+...+.. .+..|..+|+.+......+ +..........++++++.+++....++ .+.+|++..
T Consensus 229 ~~~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg--~i~i~d~~~ 299 (402)
T 2aq5_A 229 VSEGKILTTGFSRM--SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS--SIRYFEITS 299 (402)
T ss_dssp CSTTEEEEEEECTT--CCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS--CEEEEEECS
T ss_pred cCCCcEEEEeccCC--CCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC--eEEEEEecC
Confidence 99887555543221 2467888888763321222 222222222233444556766665555 477888874
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-05 Score=87.55 Aligned_cols=237 Identities=10% Similarity=-0.023 Sum_probs=132.8
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
.++|||||++|+..... | .|++||+.+++.... ..........|+||| .|+....+. .|.++++.++
T Consensus 61 ~~~~s~~g~~l~~~~~d-~----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~- 129 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLD-G----HDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEG-----DIKVLDSNFN- 129 (420)
T ss_dssp TCEEEEEETTEEEEEET-T----EEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTS-----CEEEECTTSC-
T ss_pred ceeeeecCCeEEEEEcC-C----cEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCC-----CEEEEeCCCc-
Confidence 56899999999877653 3 799999988765442 222334445789999 554443332 3777787654
Q ss_pred CCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEEcCCC
Q 004368 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRRSDE 351 (758)
Q Consensus 273 ~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~ 351 (758)
+....+.. .......+.|+|||++|+..+.+ ..|.++|+.+++....+......+.. .|+|+|+.|+..+.+
T Consensus 130 -~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-- 202 (420)
T 3vl1_A 130 -LQREIDQA-HVSEITKLKFFPSGEALISSSQD---MQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD-- 202 (420)
T ss_dssp -EEEEETTS-SSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETT--
T ss_pred -ceeeeccc-ccCccEEEEECCCCCEEEEEeCC---CeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCC--
Confidence 22333322 23334578899999988765443 35788898876634455444444433 499999987765543
Q ss_pred CCCcEEEEEeCCCCCcceeeecC-CCCceeeeEEE---------------------eC-CEEEEEEEeCCeeEEEEEEcC
Q 004368 352 LFNSELLACPVDNTSETTVLIPH-RESVKLQDIQL---------------------FI-DHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 352 ~~~~~L~~~~~~~~~~~~~l~~~-~~~~~~~~~~~---------------------~~-~~l~~~~~~~g~~~l~v~~l~ 408 (758)
..|..+|+.+......+..+ .....+..+.+ .. +.++++...+|. +.+|++.
T Consensus 203 ---~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~i~d~~ 277 (420)
T 3vl1_A 203 ---GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV--ITVHNVF 277 (420)
T ss_dssp ---SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC--EEEEETT
T ss_pred ---CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe--EEEEECC
Confidence 34666777652211112111 11111222222 22 234455666665 7788887
Q ss_pred CCCCccccccCCceeeccC-cccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 409 AVGEPLKSLQGGKSVEFID-PVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 409 ~~g~~~~~l~~~~~i~~p~-~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
. +..+ ..+.. ....+..+.+++++..++++.+ .-..+..+|+.+++
T Consensus 278 ~-~~~~--------~~~~~~~~~~v~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 278 S-KEQT--------IQLPSKFTCSCNSLTVDGNNANYIYAGY---ENGMLAQWDLRSPE 324 (420)
T ss_dssp T-CCEE--------EEECCTTSSCEEEEEECSSCTTEEEEEE---TTSEEEEEETTCTT
T ss_pred C-Ccee--------EEcccccCCCceeEEEeCCCCCEEEEEe---CCCeEEEEEcCCCc
Confidence 4 2211 11211 1112333455667763444433 22578999998764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.5e-06 Score=88.46 Aligned_cols=249 Identities=10% Similarity=0.051 Sum_probs=135.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCC---C-ceee-cc-ccCcceeEEEecC-CeEEEEEeCCCCCCceEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET---G-TPVG-KP-LVGVTASVEWAGN-EALVYITMDEILRPDKAW 264 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~---g-~~~~-~~-~~~~~~~~~wspD-g~l~y~~~~~~~~~~~v~ 264 (758)
.+..+.|||||++||..... | .|++||+.+ + +... .. -.+....++|+|| +.++++...+. .|+
T Consensus 69 ~v~~~~~s~~~~~l~~~~~d-g----~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg----~v~ 139 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDN-G----SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG----EIF 139 (416)
T ss_dssp CEEEEEECSSSSCEEEEESS-S----CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSS----CEE
T ss_pred ceEEEEECCCCCeEEEEccC-C----eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCC----eEE
Confidence 47788999999999876642 3 589999987 2 2322 11 1223566999999 56656654322 477
Q ss_pred EEEcCCCCCC----cEEEe--eecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc------ccce
Q 004368 265 LHKLEADQSN----DICLY--HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR------VVGV 332 (758)
Q Consensus 265 ~~~l~~~~~~----~~~v~--~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~------~~~~ 332 (758)
++++.+.... ..... ..........+.|+||+..++++.... ..|.++|+.+++....+... ...+
T Consensus 140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 217 (416)
T 2pm9_A 140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS--NFASIWDLKAKKEVIHLSYTSPNSGIKQQL 217 (416)
T ss_dssp BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS--SCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC--CCEEEEECCCCCcceEEeccccccccCCce
Confidence 8888766310 11111 011122334688999944334433332 34788888876522222221 2222
Q ss_pred e-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC--CEEEEEEEeCCeeEEEEEEcCC
Q 004368 333 D-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 333 ~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
. ..|+|+|..+++....+ .....|..+|+.........+.......+..+.+.. ..++++...++. +.+|++..
T Consensus 218 ~~~~~~~~~~~~l~~~~~d-~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~--v~~wd~~~ 294 (416)
T 2pm9_A 218 SVVEWHPKNSTRVATATGS-DNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT--VLLWNPES 294 (416)
T ss_dssp EEEEECSSCTTEEEEEECC-SSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE--EEEECSSS
T ss_pred EEEEECCCCCCEEEEEECC-CCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC--EEEeeCCC
Confidence 2 34899986555554444 122367777876532222222201223456666653 445556666665 77888764
Q ss_pred CCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 410 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 410 ~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
++.+ ..+......+..+.+++++..++++.+. -..+..+|+.+++
T Consensus 295 -~~~~--------~~~~~~~~~v~~~~~s~~~~~~l~s~~~---d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 295 -AEQL--------SQFPARGNWCFKTKFAPEAPDLFACASF---DNKIEVQTLQNLT 339 (416)
T ss_dssp -CCEE--------EEEECSSSCCCCEEECTTCTTEEEECCS---SSEEEEEESCCCC
T ss_pred -Cccc--------eeecCCCCceEEEEECCCCCCEEEEEec---CCcEEEEEccCCC
Confidence 3321 2222323334455667776444444332 3567788876654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.6e-06 Score=92.13 Aligned_cols=201 Identities=14% Similarity=0.138 Sum_probs=117.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc----ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP----LVGVTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~----~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~ 267 (758)
.+..+.|+|||+.+.++...+| .|++||+.+++..... ..+....++|+|||.++++...+ ..|.+++
T Consensus 133 ~v~~~~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd 204 (402)
T 2aq5_A 133 RVGIVAWHPTAQNVLLSAGCDN----VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD----KRVRVIE 204 (402)
T ss_dssp CEEEEEECSSBTTEEEEEETTS----CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT----SEEEEEE
T ss_pred eEEEEEECcCCCCEEEEEcCCC----EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC----CcEEEEe
Confidence 4678899999964444544444 5999999998876422 12335679999999444444322 2588889
Q ss_pred cCCCCCCcEEEe-eecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEee-ccccce-eeEEeecCCEE
Q 004368 268 LEADQSNDICLY-HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLT-PRVVGV-DTAASHRGNHF 343 (758)
Q Consensus 268 l~~~~~~~~~v~-~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~-~~~~~~-~~~~s~dg~~l 343 (758)
+.++ +....+ ..........+.|+|||++|+..........|.++|+.+.. ...... .....+ ...|+|+|+.|
T Consensus 205 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 205 PRKG--TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp TTTT--EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE
T ss_pred CCCC--ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE
Confidence 8765 223333 22222223467899999988775443455778999998765 222222 222222 33589999988
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCc-ceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 344 FITRRSDELFNSELLACPVDNTSE-TTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
++....+ ..|..+++.+... ...+........+..+.+..+..++.. .+ ..+++|++..
T Consensus 283 ~~~g~~d----g~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~--~~~~~~~l~~ 342 (402)
T 2aq5_A 283 YLCGKGD----SSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-KC--EIARFYKLHE 342 (402)
T ss_dssp EEEETTC----SCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-GT--EEEEEEEEET
T ss_pred EEEEcCC----CeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-cc--eeEEEEEcCC
Confidence 8776544 3466666654322 222322222234566666665443322 22 2567777763
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=7.1e-06 Score=86.86 Aligned_cols=195 Identities=12% Similarity=0.089 Sum_probs=106.8
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-c---cCcceeEEEecCCeEEEEEeCCCCCCceEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-L---VGVTASVEWAGNEALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~---~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~ 266 (758)
.+..++|||||++||-... + ..|+|||+++++.... . . ......++|+|||.++++...+. .+.++
T Consensus 18 ~v~~l~~sp~g~~las~~~-D----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~----~v~iw 88 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGG-D----RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA----TTCIW 88 (345)
T ss_dssp CEEEEEECTTSSCEEEEET-T----SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS----CEEEE
T ss_pred cEEEEEECCCCCEEEEEcC-C----CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC----cEEEE
Confidence 3567899999999986653 2 3689999988764321 1 1 22356699999995444444322 25555
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCce---EEeeccccceee-EEeecCCE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL---RVLTPRVVGVDT-AASHRGNH 342 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~---~~l~~~~~~~~~-~~s~dg~~ 342 (758)
++.++..+....+... ......+.|+|||++|+..+.+. .|.++|+.++... ..+......+.. .|+|+|+.
T Consensus 89 ~~~~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGH-ENEVKSVAWAPSGNLLATCSRDK---SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EECCC-EEEEEEECCC-SSCEEEEEECTTSSEEEEEETTS---CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EccCCCeEEEEEccCC-CCCceEEEEeCCCCEEEEEECCC---eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 6654421122233322 23345788999999887655432 3566666554312 223333333333 48999997
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCCCcce--eeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcC
Q 004368 343 FFITRRSDELFNSELLACPVDNTSETT--VLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~ 408 (758)
|+..+.++ ..+|+. +....... .+..+ ...+..+.+..+ ..++....++. +++|+..
T Consensus 165 l~s~s~d~---~i~~w~--~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~--v~iW~~~ 224 (345)
T 3fm0_A 165 LASASYDD---TVKLYR--EEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRT--VRIWRQY 224 (345)
T ss_dssp EEEEETTS---CEEEEE--EETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSC--EEEEEEE
T ss_pred EEEEeCCC---cEEEEE--ecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCe--EEEeccc
Confidence 77665543 344544 33211111 12222 234556666543 33445666665 5667653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.8e-05 Score=82.61 Aligned_cols=242 Identities=14% Similarity=0.110 Sum_probs=130.4
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc-CcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-GVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~-~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++||-... + ..|.|||+.+++.... ... .....++|+|||.++.+...+ ..+.++++.
T Consensus 66 ~V~~~~~s~d~~~l~s~s~-D----g~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d----~~i~v~~~~ 136 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQ-D----GKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD----NKCSVYPLT 136 (354)
T ss_dssp CEEEEEECTTSSEEEEEET-T----SEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTT----SEEEEEECC
T ss_pred eEEEEEECCCCCEEEEEeC-C----CeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCC----CCEEEEEEe
Confidence 3677899999999875443 3 3799999988876542 222 225568999999544444322 235555554
Q ss_pred CCCC----CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEee--cCCE
Q 004368 270 ADQS----NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASH--RGNH 342 (758)
Q Consensus 270 ~~~~----~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~--dg~~ 342 (758)
.... .....+.. .......+.|+||++.|+..+.+ ..|.++|+.+++....+......+.. .+++ +|+.
T Consensus 137 ~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~s~D---~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAM-HTNYLSACSFTNSDMQILTASGD---GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCTTCCSGGGCEEEEE-CSSCEEEEEECSSSSEEEEEETT---SEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred ccccccccccceeeec-cCCcEEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 3311 11222222 22334467899999988765443 34777898877633344433333332 3555 4565
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCccccccCCc
Q 004368 343 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGK 421 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~ 421 (758)
|+..+. + ..|..+|+.+......+..+. ..+..+.+..+ .++++...++. +++|++.. +..+.
T Consensus 213 l~sgs~-D----g~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~~--v~lwd~~~-~~~~~------ 276 (354)
T 2pbi_B 213 FVSGGC-D----KKAMVWDMRSGQCVQAFETHE--SDVNSVRYYPSGDAFASGSDDAT--CRLYDLRA-DREVA------ 276 (354)
T ss_dssp EEEEET-T----SCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSC--EEEEETTT-TEEEE------
T ss_pred EEEEeC-C----CeEEEEECCCCcEEEEecCCC--CCeEEEEEeCCCCEEEEEeCCCe--EEEEECCC-CcEEE------
Confidence 554443 2 357778876532222232232 23556666542 34445566664 77888873 22110
Q ss_pred eeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 422 SVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 422 ~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.+........+....+++++..+..... -..+..||+.+++
T Consensus 277 ~~~~~~~~~~~~~~~~s~~g~~l~~g~~----d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 277 IYSKESIIFGASSVDFSLSGRLLFAGYN----DYTINVWDVLKGS 317 (354)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCS
T ss_pred EEcCCCcccceeEEEEeCCCCEEEEEEC----CCcEEEEECCCCc
Confidence 0110000111222345566665543332 2468888887776
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-05 Score=86.25 Aligned_cols=191 Identities=10% Similarity=0.087 Sum_probs=113.8
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc-Cc---------------ceeEEEecCCeEEEEEe
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-GV---------------TASVEWAGNEALVYITM 254 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~-~~---------------~~~~~wspDg~l~y~~~ 254 (758)
.+..+.|+|||++|+.... +| .|++||+.+++.... ... .. ...+.|+|++.++....
T Consensus 151 ~v~~~~~~~~~~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (425)
T 1r5m_A 151 PIVSVKWNKDGTHIISMDV-EN----VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP 225 (425)
T ss_dssp CEEEEEECTTSSEEEEEET-TC----CEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECG
T ss_pred cEEEEEECCCCCEEEEEec-CC----eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC
Confidence 4678899999999986654 33 589999998876542 111 11 45589999986554433
Q ss_pred CCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-
Q 004368 255 DEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD- 333 (758)
Q Consensus 255 ~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~- 333 (758)
+ ..|+.+++.++. ....+.... .....+.|+||+++|+..+.+ ..|.++|+.+++....+......+.
T Consensus 226 ~-----g~i~~~d~~~~~--~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~i~~ 294 (425)
T 1r5m_A 226 K-----GAIFVYQITEKT--PTGKLIGHH-GPISVLEFNDTNKLLLSASDD---GTLRIWHGGNGNSQNCFYGHSQSIVS 294 (425)
T ss_dssp G-----GCEEEEETTCSS--CSEEECCCS-SCEEEEEEETTTTEEEEEETT---SCEEEECSSSBSCSEEECCCSSCEEE
T ss_pred C-----CeEEEEEcCCCc--eeeeeccCC-CceEEEEECCCCCEEEEEcCC---CEEEEEECCCCccceEecCCCccEEE
Confidence 3 248888888763 233333222 233467899999988765533 3478888877653334433333333
Q ss_pred eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcC
Q 004368 334 TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 334 ~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~ 408 (758)
..|+++| .++..+. + ..|..+++.+......+..+. ..+..+.+..+ .++++...+|. +.+|++.
T Consensus 295 ~~~~~~~-~l~~~~~-d----~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~dg~--i~i~~~~ 360 (425)
T 1r5m_A 295 ASWVGDD-KVISCSM-D----GSVRLWSLKQNTLLALSIVDG--VPIFAGRISQDGQKYAVAFMDGQ--VNVYDLK 360 (425)
T ss_dssp EEEETTT-EEEEEET-T----SEEEEEETTTTEEEEEEECTT--CCEEEEEECTTSSEEEEEETTSC--EEEEECH
T ss_pred EEECCCC-EEEEEeC-C----CcEEEEECCCCcEeEecccCC--ccEEEEEEcCCCCEEEEEECCCe--EEEEECC
Confidence 3488988 4444333 2 468888886532222233222 24556666543 33444555554 7788876
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.2e-06 Score=90.93 Aligned_cols=147 Identities=7% Similarity=0.027 Sum_probs=79.5
Q ss_pred ceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCC----ceeeEEEEcCCCcEEEEEecCCcceEEE
Q 004368 238 TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDD----IYSLGLQASESKKFLFIASESKITRFVF 312 (758)
Q Consensus 238 ~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~----~~~~~~~~S~Dg~~l~~~s~~~~~~~l~ 312 (758)
+..++||||| .|+-.+.+. .|.+++..+ ....++ .+. .-..+++|||||++|+..+.+ ..|.
T Consensus 88 V~~vawSPdG~~LAs~s~dg-----~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D---GtVk 154 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNG-----NVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED---GELQ 154 (588)
T ss_dssp EEEEEECSSSSCEEEEETTS-----CEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT---SEEE
T ss_pred EEEEEECCCCCEEEEEeCCC-----cEEEEeCCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC---CEEE
Confidence 5668999999 676555443 255555322 112222 221 124478999999999876543 3456
Q ss_pred EEeCCCCC--c-----eEEeecc----ccceee-EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcce-e-eecCCCCc
Q 004368 313 YLDVSKPE--E-----LRVLTPR----VVGVDT-AASHRGNHFFITRRSDELFNSELLACPVDNTSETT-V-LIPHRESV 378 (758)
Q Consensus 313 ~~d~~~~~--~-----~~~l~~~----~~~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~-~-l~~~~~~~ 378 (758)
++|+.++. . ...+... ...+.. .|+||| ++..+. + ..+..+++++..... + .+......
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~-D----~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS-N----NSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET-T----CCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC-C----CeEEEEECCCCccccceeeecccccC
Confidence 66777654 1 1333211 223333 499998 444333 2 346666776533211 1 22112223
Q ss_pred eeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 379 KLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 379 ~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
.+.++.+.++.++.. . + ..+++|++.
T Consensus 228 ~V~svaFsg~~LASa-~-~--~tIkLWd~~ 253 (588)
T 2j04_A 228 KITDLKIVDYKVVLT-C-P--GYVHKIDLK 253 (588)
T ss_dssp CCCCEEEETTEEEEE-C-S--SEEEEEETT
T ss_pred cEEEEEEECCEEEEE-e-C--CeEEEEECC
Confidence 466777765555533 3 3 368899987
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.8e-05 Score=82.78 Aligned_cols=236 Identities=13% Similarity=0.142 Sum_probs=131.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceee-cc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~-~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+..+.|||||++||..... | .|++||. +++... .. .......++|+||+ .|+....+. .+.++++
T Consensus 110 ~v~~~~~s~~~~~l~~~~~d-g----~i~i~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~ 178 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVEN-G----ELRLWNK-TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVEN-----VTILWNV 178 (425)
T ss_dssp CEEEEEECTTSSEEEEEETT-S----CEEEEET-TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTC-----CEEEEET
T ss_pred ceEEEEEcCCCCEEEEEeCC-C----eEEEEeC-CCCeeeeccCCCccEEEEEECCCCCEEEEEecCC-----eEEEEEC
Confidence 57788999999999876542 3 5888995 444433 22 22335679999999 454443322 3777787
Q ss_pred CCCCCCcEEEeeecCCc--------------eeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-
Q 004368 269 EADQSNDICLYHEKDDI--------------YSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD- 333 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~--------------~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~- 333 (758)
.++ +....+...... ....+.|++++..+ .... ...|+++|+.+++....+......+.
T Consensus 179 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~g~i~~~d~~~~~~~~~~~~~~~~i~~ 252 (425)
T 1r5m_A 179 ISG--TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFV-IPGP---KGAIFVYQITEKTPTGKLIGHHGPISV 252 (425)
T ss_dssp TTT--EEEEEECCC---------------CCCBSCCEEEETTEEE-EECG---GGCEEEEETTCSSCSEEECCCSSCEEE
T ss_pred CCC--cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEE-EEcC---CCeEEEEEcCCCceeeeeccCCCceEE
Confidence 665 222222221111 13456788887643 3222 24588889887663333433333333
Q ss_pred eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCc
Q 004368 334 TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEP 413 (758)
Q Consensus 334 ~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~ 413 (758)
..|+++++.|+..+.. ..|..+++........+..+ ...+..+.+..+.++++...++. +.+|++.. +..
T Consensus 253 ~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~l~~~~~d~~--i~i~d~~~-~~~ 322 (425)
T 1r5m_A 253 LEFNDTNKLLLSASDD-----GTLRIWHGGNGNSQNCFYGH--SQSIVSASWVGDDKVISCSMDGS--VRLWSLKQ-NTL 322 (425)
T ss_dssp EEEETTTTEEEEEETT-----SCEEEECSSSBSCSEEECCC--SSCEEEEEEETTTEEEEEETTSE--EEEEETTT-TEE
T ss_pred EEECCCCCEEEEEcCC-----CEEEEEECCCCccceEecCC--CccEEEEEECCCCEEEEEeCCCc--EEEEECCC-CcE
Confidence 3489999977665543 35777777652222223223 23456777776555556666664 77888863 321
Q ss_pred cccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 414 LKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 414 ~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
+ ..+......+....++++++.++.... -..+..||+.+++
T Consensus 323 ~--------~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 323 L--------ALSIVDGVPIFAGRISQDGQKYAVAFM----DGQVNVYDLKKLN 363 (425)
T ss_dssp E--------EEEECTTCCEEEEEECTTSSEEEEEET----TSCEEEEECHHHH
T ss_pred e--------EecccCCccEEEEEEcCCCCEEEEEEC----CCeEEEEECCCCc
Confidence 1 111111112333445666766544332 2467788876554
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.1e-05 Score=79.95 Aligned_cols=193 Identities=10% Similarity=0.085 Sum_probs=113.6
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCcee---eccc---cCcceeEEEecCCeEEEEEeCCCCCCceEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV---GKPL---VGVTASVEWAGNEALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~---~~~~---~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~ 266 (758)
+....|||||++||.... ...|.+||+.+++.. ...+ .+....+.|++++.++..+.+. .|.++
T Consensus 100 v~~~~~s~~~~~l~s~~~-----d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~-----~i~~w 169 (340)
T 1got_B 100 VMTCAYAPSGNYVACGGL-----DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-----TCALW 169 (340)
T ss_dssp EEEEEECTTSSEEEEEET-----TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTS-----CEEEE
T ss_pred EEEEEECCCCCEEEEEeC-----CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCC-----cEEEE
Confidence 567899999999986654 246899999876421 1112 2235568899998765444332 37778
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFI 345 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~ 345 (758)
++.++ +....+.... .....+.|+||+++|+..+.+ ..|.++|+.++.....+......+.. .|+|+|+.|+.
T Consensus 170 d~~~~--~~~~~~~~h~-~~v~~~~~~~~~~~l~sg~~d---~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 243 (340)
T 1got_B 170 DIETG--QQTTTFTGHT-GDVMSLSLAPDTRLFVSGACD---ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243 (340)
T ss_dssp ETTTT--EEEEEECCCS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECCCC--cEEEEEcCCC-CceEEEEECCCCCEEEEEeCC---CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEE
Confidence 88766 2333443322 234578899999987654433 34677788776523334333333333 48999997766
Q ss_pred EEcCCCCCCcEEEEEeCCCCCcceeeecCC-CCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 346 TRRSDELFNSELLACPVDNTSETTVLIPHR-ESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
.+.+ ..|..+|+... ......... ....+..+.+..+ .+++....++. +.+|++..
T Consensus 244 ~s~d-----~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~--i~vwd~~~ 301 (340)
T 1got_B 244 GSDD-----ATCRLFDLRAD-QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN--CNVWDALK 301 (340)
T ss_dssp EETT-----SCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE--EEEEETTT
T ss_pred EcCC-----CcEEEEECCCC-cEEEEEccCCcccceEEEEECCCCCEEEEECCCCe--EEEEEccc
Confidence 5543 34666777652 221222222 1123455666543 34445556664 77888763
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.9e-05 Score=84.91 Aligned_cols=231 Identities=14% Similarity=0.067 Sum_probs=129.7
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc-cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
.+..+.+||||++|+.... +| .|.+||+.+.+...... ......++|+|||..+.+...+. .+.+++...
T Consensus 305 ~v~~~~~~~~~~~l~t~~~-d~----~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg----~v~~~~~~~ 375 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASD-DK----TVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK----TVKLWNRNG 375 (577)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----CEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTC
T ss_pred CeEEEEECCCCCEEEEEeC-CC----eEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCC----EEEEEcCCC
Confidence 4567899999999986654 23 58899987766544322 22355689999994334443321 355666432
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEEEcC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~ 349 (758)
+....+.... .....+.++|||++|+..+.+ ..|.++|..+.. .+.+......+. ..|+||++.|+..+.+
T Consensus 376 ---~~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~d---~~v~~~~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 376 ---QLLQTLTGHS-SSVRGVAFSPDGQTIASASDD---KTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp ---CEEEEEECCS-SCEEEEEECTTSSCEEEEETT---SEEEEECTTCCE-EEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred ---CEEEEecCCC-CCeEEEEECCCCCEEEEEeCC---CEEEEEeCCCCE-EEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 2222333222 223467899999998765443 346777765432 444544444333 3489999987765543
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCc
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDP 428 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~ 428 (758)
..|...+..+ .....+..+.. .+..+.+..+ .++++...++. +++|+.+ |+.+ ..+..+
T Consensus 448 -----~~v~~w~~~~-~~~~~~~~~~~--~v~~~~~spd~~~las~~~d~~--i~iw~~~--~~~~--------~~~~~h 507 (577)
T 2ymu_A 448 -----KTVKLWNRNG-QLLQTLTGHSS--SVRGVAFSPDGQTIASASDDKT--VKLWNRN--GQLL--------QTLTGH 507 (577)
T ss_dssp -----SEEEEEETTS-CEEEEEECCSS--CEEEEEECTTSCEEEEEETTSE--EEEEETT--SCEE--------EEEECC
T ss_pred -----CEEEEEECCC-CEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCE--EEEEcCC--CCEE--------EEEeCC
Confidence 3566667643 22223444433 3455665543 33445555664 7788865 5422 122222
Q ss_pred ccccCCCCcccCCcEEEEEEecCCCCCEEEEEECC
Q 004368 429 VYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMD 463 (758)
Q Consensus 429 ~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~ 463 (758)
...|..+.+++++..++ +.+. -..+..+|..
T Consensus 508 ~~~v~~l~~s~dg~~l~-s~~~---dg~v~lwd~~ 538 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIA-SASD---DKTVKLWNRN 538 (577)
T ss_dssp SSCEEEEEECTTSSCEE-EEET---TSEEEEECTT
T ss_pred CCCEEEEEEcCCCCEEE-EEEC---cCEEEEEeCC
Confidence 22333445667776653 3222 2467788854
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-07 Score=102.16 Aligned_cols=111 Identities=9% Similarity=0.012 Sum_probs=76.7
Q ss_pred CCCCEEEEecCCCccCCCCCCCh-HHHHHH-HcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNS-SRLSLL-DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~-~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 591 (758)
...|+||++||..+. ....|.. .+..|+ ..+|.|+++|.||+|..... .+. ..-....+|+.+.+++|.++..
T Consensus 67 ~~~p~vvliHG~~~s-~~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~y~--~~~--~~~~~v~~~la~ll~~L~~~~g 141 (449)
T 1hpl_A 67 TGRKTRFIIHGFIDK-GEESWLSTMCQNMFKVESVNCICVDWKSGSRTAYS--QAS--QNVRIVGAEVAYLVGVLQSSFD 141 (449)
T ss_dssp TTSEEEEEECCCCCT-TCTTHHHHHHHHHHHHCCEEEEEEECHHHHSSCHH--HHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEecCCCC-CCccHHHHHHHHHHhcCCeEEEEEeCCcccCCccH--HHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 456899999994432 2233444 334554 46899999999998765321 110 0001122466677777764433
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
++.+++.++|||+||.+++.++.++|++++.+++..|.
T Consensus 142 ~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa 179 (449)
T 1hpl_A 142 YSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPA 179 (449)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred CCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCcc
Confidence 56799999999999999999999999999999877664
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.1e-07 Score=97.68 Aligned_cols=112 Identities=19% Similarity=0.152 Sum_probs=75.1
Q ss_pred CCEEEEecCCCccCCCC-CCChHHHHHHH-cCcEEEEEecCCCCCCchhHHhcc-------cccCCcChHhHHHHHHHHH
Q 004368 516 DPLLLYGYGSYEICNDP-AFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENG-------KFLKKKNTFTDFIACAEYL 586 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~-~~~~~~~~l~~-~G~~v~~~~~RG~g~~G~~~~~~~-------~~~~~~~~~~D~~~~~~~l 586 (758)
.|+ ++.|||.+..... ........+++ .|+.|+..|.||+|.+.. ..... ....-.+.++|+...+++|
T Consensus 39 ~Pi-~l~~Ggeg~~~~~~~~~g~~~~lA~~~~~~Vi~~DhRg~G~S~p-~~~~~~~~~~~l~~lt~~q~~~Dl~~~~~~l 116 (446)
T 3n2z_B 39 GSI-LFYTGNEGDIIWFCNNTGFMWDVAEELKAMLVFAEHRYYGESLP-FGDNSFKDSRHLNFLTSEQALADFAELIKHL 116 (446)
T ss_dssp CEE-EEEECCSSCHHHHHHHCHHHHHHHHHHTEEEEEECCTTSTTCCT-TGGGGGSCTTTSTTCSHHHHHHHHHHHHHHH
T ss_pred CCE-EEEeCCCCcchhhhhcccHHHHHHHHhCCcEEEEecCCCCCCCC-CCccccccchhhccCCHHHHHHHHHHHHHHH
Confidence 565 4558887743210 01223445665 489999999999998742 11100 0111234567888888888
Q ss_pred HHcC-CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 587 IKNC-YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 587 ~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
..+. .....++.++||||||.++++++.++|+++.++|+.++.
T Consensus 117 ~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssap 160 (446)
T 3n2z_B 117 KRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAP 160 (446)
T ss_dssp HHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCC
T ss_pred HHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEeccc
Confidence 7652 223358999999999999999999999999999987643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.44 E-value=6.9e-05 Score=77.33 Aligned_cols=228 Identities=11% Similarity=0.005 Sum_probs=126.9
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQS 273 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~ 273 (758)
.++.|+|+++.|.|+-...+ .|+.+|.++++............++|+|||.++... . ..|++++..++.
T Consensus 16 Egp~w~~~~~~l~~~d~~~~----~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~-~-----~~l~~~d~~~g~- 84 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAK----KVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI-G-----TKFCALNWKEQS- 84 (297)
T ss_dssp EEEEEETTTTEEEEEETTTT----EEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE-T-----TEEEEEETTTTE-
T ss_pred cCCeEECCCCEEEEEECCCC----EEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE-C-----CeEEEEECCCCc-
Confidence 47899999888877654333 689999999877544445556679999999754443 2 258888887652
Q ss_pred CcEEEeeec-C-C-ceeeEEEEcCCCcEEEEEecC---------CcceEEEEEeCCCCCceEEeeccccc-eeeEEeecC
Q 004368 274 NDICLYHEK-D-D-IYSLGLQASESKKFLFIASES---------KITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRG 340 (758)
Q Consensus 274 ~~~~v~~~~-~-~-~~~~~~~~S~Dg~~l~~~s~~---------~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg 340 (758)
-..+.... . + ....++.++|||+. ++.... .....||.++.++ . ...+...... ....|++||
T Consensus 85 -~~~~~~~~~~~~~~~~~di~~d~dG~l-~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~-~~~~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 85 -AVVLATVDNDKKNNRFNDGKVDPAGRY-FAGTMAEETAPAVLERHQGALYSLFPDH-H-VKKYFDQVDISNGLDWSLDH 160 (297)
T ss_dssp -EEEEEECCTTCSSEEEEEEEECTTSCE-EEEEEECCSBTTBCCTTCEEEEEECTTS-C-EEEEEEEESBEEEEEECTTS
T ss_pred -EEEEEecCCCCCCCCCCCEEECCCCCE-EEecCCcccccccccCCCcEEEEEECCC-C-EEEEeeccccccceEEcCCC
Confidence 22232211 1 1 12345778999994 454322 2345799998764 3 4333332211 123489999
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCC--CCCcc--eeeecC-CCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCcc
Q 004368 341 NHFFITRRSDELFNSELLACPVD--NTSET--TVLIPH-RESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPL 414 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~--~~~~~--~~l~~~-~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~ 414 (758)
+.+|+..... .+|++++++ +.... +.+... .....+.++.++.+ .+++....++ .|.+++.+. |+.+
T Consensus 161 ~~lyv~~~~~----~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~--~v~~~d~~t-G~~~ 233 (297)
T 3g4e_A 161 KIFYYIDSLS----YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG--RVIRLDPVT-GKRL 233 (297)
T ss_dssp CEEEEEEGGG----TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT--EEEEECTTT-CCEE
T ss_pred CEEEEecCCC----CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC--EEEEEcCCC-ceEE
Confidence 9988875543 578887753 21111 112211 11234567777764 4554444333 366665542 4422
Q ss_pred ccccCCceeeccCcccccCCCCcc-cCCcEEEEEEecC
Q 004368 415 KSLQGGKSVEFIDPVYSIDPSESV-FSSRILRFHYSSL 451 (758)
Q Consensus 415 ~~l~~~~~i~~p~~~~~i~~~~~~-~d~~~l~~~~sS~ 451 (758)
..+.+|.. .+....+. ++.++++++..+.
T Consensus 234 ------~~i~~p~~--~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 234 ------QTVKLPVD--KTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp ------EEEECSSS--BEEEEEEESGGGCEEEEEEBCT
T ss_pred ------EEEECCCC--CceEEEEeCCCCCEEEEEcCCc
Confidence 23443321 11222233 4566777666543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-05 Score=94.50 Aligned_cols=194 Identities=11% Similarity=0.076 Sum_probs=115.7
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+..+.|||||++||.+.+ + ..|+|||+.+++.... . -.+....++|+||| .|+ +...+ ..+.++++
T Consensus 57 ~v~~~~~s~~~~~l~~~~~-d----g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d----g~i~vw~~ 126 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSD-D----FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDD----LTVKLWNW 126 (814)
T ss_dssp CEEEEEEEGGGTEEEEEET-T----SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEE-EEETT----SEEEEEEG
T ss_pred cEEEEEEeCCCCEEEEEeC-C----CeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEE-EEcCC----CEEEEEEC
Confidence 4678899999999998765 2 3699999999987653 2 23346679999999 555 44332 24777788
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcC-CCcEEEEEecCCcceEEEEEeCCCCCceEEeeccc-ccee-eEEee--cCCEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-VGVD-TAASH--RGNHF 343 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~-Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~-~~~s~--dg~~l 343 (758)
.++.. ....+.. .......+.|+| |++.|+..+.+ ..|.++|+.++.....+.... ..+. ..|+| +|..+
T Consensus 127 ~~~~~-~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~d---g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 127 ENNWA-LEQTFEG-HEHFVMCVAFNPKDPSTFASGCLD---RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp GGTSE-EEEEEEC-CSSCEEEEEEETTEEEEEEEEETT---SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred CCCce-EEEEEcC-CCCcEEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence 66521 2223332 233345788999 77777665443 357888887665233333222 3333 34777 78766
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 344 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+..+. + ..|..+++.+......+..+.. .+..+.+..+ .++++...+|. +.+|++..
T Consensus 202 ~~~~~-d----g~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~--v~vwd~~~ 259 (814)
T 3mkq_A 202 ITASD-D----LTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGT--LKIWNSST 259 (814)
T ss_dssp EEECT-T----SEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSC--EEEEETTT
T ss_pred EEEeC-C----CEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCe--EEEEECCC
Confidence 55433 2 4677788765322222333332 3455555543 24445555664 77888764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.4e-05 Score=81.16 Aligned_cols=236 Identities=8% Similarity=-0.031 Sum_probs=126.7
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
..++.|+|||+.|.|+-..++ .|+.++. +|+..... ..+...+++|++||+++..... ...|++++.. +
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~----~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~----~~~v~~~~~~-g 116 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGR----RVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHG----RRAITRSDAD-G 116 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTT----EEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETT----TTEEEEECTT-S
T ss_pred ccCCeEeCCCCEEEEEECCCC----EEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECC----CCEEEEECCC-C
Confidence 457899999998888755444 5888888 45543322 2233566899999976544322 1257777664 2
Q ss_pred CCCcEEEeeecCCc---eeeEEEEcCCCcEEEEEec---C------------CcceEEEEEeCCCCCceEEeeccccc-e
Q 004368 272 QSNDICLYHEKDDI---YSLGLQASESKKFLFIASE---S------------KITRFVFYLDVSKPEELRVLTPRVVG-V 332 (758)
Q Consensus 272 ~~~~~~v~~~~~~~---~~~~~~~S~Dg~~l~~~s~---~------------~~~~~l~~~d~~~~~~~~~l~~~~~~-~ 332 (758)
+...+....... ...++.+++||+. +++.. . .....||++|.++++ ++.+. .... .
T Consensus 117 --~~~~~~~~~~~~~~~~~~~i~~d~dG~l-~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-~~~~~-~~~~p~ 191 (305)
T 3dr2_A 117 --QAHLLVGRYAGKRLNSPNDLIVARDGAI-WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-LQRMA-DLDHPN 191 (305)
T ss_dssp --CEEEEECEETTEECSCCCCEEECTTSCE-EEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-CEEEE-EESSEE
T ss_pred --CEEEEEeccCCCccCCCCCEEECCCCCE-EEeCcCCCccccccccccccccCCCeEEEEcCCCCc-EEEEe-cCCCCc
Confidence 222222211111 1124678999984 44321 0 123689999997776 55544 2211 1
Q ss_pred eeEEeecCCEEEEEEcCCC-CCCcEEEEEeCCCCCcc-eeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCC
Q 004368 333 DTAASHRGNHFFITRRSDE-LFNSELLACPVDNTSET-TVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAV 410 (758)
Q Consensus 333 ~~~~s~dg~~l~~~s~~~~-~~~~~L~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~ 410 (758)
...|++||+.||+...... ..+.+|+++++++.... ..++.........++..+.+.-+++...+ .|.+++.+
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~---gv~~~~~~-- 266 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT---GVCVFDSD-- 266 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS---EEEEECTT--
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC---cEEEECCC--
Confidence 2348999999988765320 11357888887542211 11221111223456667654333333333 36666553
Q ss_pred CCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEEC
Q 004368 411 GEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDM 462 (758)
Q Consensus 411 g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~ 462 (758)
|+.+ ..+..+.. +....+.++++.++++.+ ..+|++++
T Consensus 267 g~~~------~~~~~~~~---~~~~~f~~d~~~L~it~~-----~~l~~~~~ 304 (305)
T 3dr2_A 267 GQLL------GHIPTPGT---ASNCTFDQAQQRLFITGG-----PCLWMLPL 304 (305)
T ss_dssp SCEE------EEEECSSC---CCEEEECTTSCEEEEEET-----TEEEEEEC
T ss_pred CCEE------EEEECCCc---eeEEEEeCCCCEEEEEcC-----CeEEEEEC
Confidence 5533 23333331 222233356777766543 26777764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.42 E-value=2.8e-05 Score=82.92 Aligned_cols=119 Identities=17% Similarity=0.129 Sum_probs=69.7
Q ss_pred CCCCEEEEEEeCCCC--eEEEEEEEECCCCceeeccccCcceeEEEecCCeEEEEEeC------CCCCCceEEEEEcCCC
Q 004368 200 PDNKLVAYAEDTKGD--EIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMD------EILRPDKAWLHKLEAD 271 (758)
Q Consensus 200 PDG~~lAy~~~~~G~--e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg~l~y~~~~------~~~~~~~v~~~~l~~~ 271 (758)
||+++ +|..+.+.+ ....|+++|.++++.......+....+++||||+.+|+... .+.....|..+++.+.
T Consensus 13 ~~~~~-~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 13 PQENR-IYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp CGGGE-EEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCCE-EEEECCCCCccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 57777 566664321 12489999999998765311222227899999966666542 1112235778888765
Q ss_pred CCCcEEEeeecC---CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 272 QSNDICLYHEKD---DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 272 ~~~~~~v~~~~~---~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
.....+...... ...-..+.+||||++|++.... ....|.++|+++++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~-~~~~v~v~d~~~~~ 142 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS-PATSIGIVDVAKGD 142 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES-SSEEEEEEETTTTE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC-CCCeEEEEECCCCc
Confidence 322222111000 0112246799999998875432 23568888988765
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00011 Score=77.89 Aligned_cols=197 Identities=13% Similarity=0.106 Sum_probs=111.4
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc---cCcceeEEEecC--CeEEEEEeCCCCCCceEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL---VGVTASVEWAGN--EALVYITMDEILRPDKAWL 265 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~---~~~~~~~~wspD--g~l~y~~~~~~~~~~~v~~ 265 (758)
.+..+.|||||++||.... +| .|+|||+.++..... .+ .+....++|+|+ +.++++...+. .|.+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~v~i 83 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSS-DK----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG----KVLI 83 (379)
T ss_dssp CEEEEEECSSSSEEEEEET-TS----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS----CEEE
T ss_pred cEEEEEEcCCCCEEEEEEC-CC----cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC----EEEE
Confidence 4678899999999987654 23 588888874432221 22 223566899987 65555554332 3777
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCC--CcEEEEEecCCcceEEEEEeCCCCC--ceEEeeccccceee-EEee--
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASES--KKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVGVDT-AASH-- 338 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~D--g~~l~~~s~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~~-~~s~-- 338 (758)
+++.++.......+.. .......+.|+|+ +++|+..+.+ ..|.++|+.+.. ....+......+.. .|+|
T Consensus 84 wd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSD---GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp EEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETT---SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred EEcCCCceeEeeeecC-CCcceEEEEeCCCCCCCEEEEecCC---CcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence 7776652112222222 2233457889999 8888775543 357777887653 22233333333332 3788
Q ss_pred -----------cCCEEEEEEcCCCCCCcEEEEEeCCCCCcc-ee--eecCCCCceeeeEEEeCC----EEEEEEEeCCee
Q 004368 339 -----------RGNHFFITRRSDELFNSELLACPVDNTSET-TV--LIPHRESVKLQDIQLFID----HLAVYEREGGLQ 400 (758)
Q Consensus 339 -----------dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~-~~--l~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 400 (758)
++..|+..+.++ .|..+|+...... .. .+.. ....+..+.+..+ .++++...+|.
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~dg~- 232 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRSYLASVSQDRT- 232 (379)
T ss_dssp ----------CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECC-CSSCEEEEEECCCCSSSEEEEEEETTSC-
T ss_pred ccccccccCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEEec-ccCcEeEEEECCCCCCCCeEEEEeCCCE-
Confidence 577666655432 3555555432221 11 1221 2234556666653 56666666765
Q ss_pred EEEEEEcCC
Q 004368 401 KITTYRLPA 409 (758)
Q Consensus 401 ~l~v~~l~~ 409 (758)
+.+|++..
T Consensus 233 -i~iwd~~~ 240 (379)
T 3jrp_A 233 -CIIWTQDN 240 (379)
T ss_dssp -EEEEEESS
T ss_pred -EEEEeCCC
Confidence 77888874
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=4.6e-05 Score=86.10 Aligned_cols=253 Identities=11% Similarity=0.040 Sum_probs=141.7
Q ss_pred EeeEEEC----CCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccC------------cceeEEEecCC-eEEEEEe
Q 004368 193 VGCFQVS----PDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG------------VTASVEWAGNE-ALVYITM 254 (758)
Q Consensus 193 i~~~~~S----PDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~------------~~~~~~wspDg-~l~y~~~ 254 (758)
...+.+| |||++++.+....+ ++.|+|.++.+.+.. ...+ ....+..|+++ .+++. .
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~----~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~-~ 316 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPP----QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN-V 316 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETT----EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE-E
T ss_pred CceeEEccccCCCCCEEEEEEccCC----eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE-e
Confidence 3577899 79999876655444 578899999887653 2111 12456778888 54444 3
Q ss_pred CCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc---cc-
Q 004368 255 DEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR---VV- 330 (758)
Q Consensus 255 ~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~---~~- 330 (758)
.+ ..+|+..+..+.. ...+..-....+..++.|+|||+++++..+. ...|.++|+++++ +....+- ..
T Consensus 317 ~~---~g~v~~vd~~~~~--~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~--sn~V~ViD~~t~k-l~~~i~vgg~~Ph 388 (567)
T 1qks_A 317 KE---TGKILLVDYTDLN--NLKTTEISAERFLHDGGLDGSHRYFITAANA--RNKLVVIDTKEGK-LVAIEDTGGQTPH 388 (567)
T ss_dssp TT---TTEEEEEETTCSS--EEEEEEEECCSSEEEEEECTTSCEEEEEEGG--GTEEEEEETTTTE-EEEEEECSSSSBC
T ss_pred cC---CCeEEEEecCCCc--cceeeeeeccccccCceECCCCCEEEEEeCC--CCeEEEEECCCCc-EEEEEeccCcCCC
Confidence 32 2368888876542 2222222233444467899999998886643 4568999999876 3222211 11
Q ss_pred -ceee-EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCC--ccee----eecCCCCc-eeeeEEEeCCEEEEEEEeCC---
Q 004368 331 -GVDT-AASHRGNHFFITRRSDELFNSELLACPVDNTS--ETTV----LIPHRESV-KLQDIQLFIDHLAVYEREGG--- 398 (758)
Q Consensus 331 -~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~--~~~~----l~~~~~~~-~~~~~~~~~~~l~~~~~~~g--- 398 (758)
+... .++|+++.+|+.++.+ ...|.+++.+... ...| .++..... ..-..++++.++++...-+.
T Consensus 389 pg~g~~~~~p~~g~v~~t~~~g---~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~ 465 (567)
T 1qks_A 389 PGRGANFVHPTFGPVWATSHMG---DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE 465 (567)
T ss_dssp CTTCEEEEETTTEEEEEEEBSS---SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred CccceeeECCCCCcEEEeCCCC---CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcc
Confidence 1122 2577778887766644 2457778765411 0112 22222111 11123455567766542221
Q ss_pred -eeEEEEEEcCCC---CCccccccCC-ceee------ccCcccccCCCCcccCCcEEEEEEec-CCCCCEEEEEECCCCc
Q 004368 399 -LQKITTYRLPAV---GEPLKSLQGG-KSVE------FIDPVYSIDPSESVFSSRILRFHYSS-LRTPPSVYDYDMDMGI 466 (758)
Q Consensus 399 -~~~l~v~~l~~~---g~~~~~l~~~-~~i~------~p~~~~~i~~~~~~~d~~~l~~~~sS-~~~P~~i~~~d~~~~~ 466 (758)
...+.|+++... |... . +.+. +++..-.+..+.++++++.++++.-+ -.....|..+|.++++
T Consensus 466 ~~~~v~v~d~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 466 ISGSVAVFDIKAMTGDGSDP-----EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp HHTCEEEEEGGGCCCSSSCC-----CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred cCceEEEEECCcccccccCC-----CcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 236888988632 1110 0 1111 12211112234567889999887533 2356889999999987
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.42 E-value=4.9e-06 Score=88.96 Aligned_cols=147 Identities=10% Similarity=0.116 Sum_probs=88.6
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc---CcceeEEEecCC-eEEEEEeCCCCCCceEEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV---GVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~---~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~ 267 (758)
+..+.|||||++||...+ + .+.+++..+++.... ... .....++|+||| .++..+.+. .....++.++
T Consensus 179 V~~v~fspdg~~l~s~s~--~----~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~-~~~~~i~~~~ 251 (365)
T 4h5i_A 179 VKDLHFSTDGKVVAYITG--S----SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKK-GKGIVLTKIS 251 (365)
T ss_dssp CCEEEECTTSSEEEEECS--S----CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESS-SCCEEEEEEE
T ss_pred eEEEEEccCCceEEeccc--e----eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCC-cceeEEeecc
Confidence 668899999999998753 1 366777777776532 221 125668999999 455444443 3333466666
Q ss_pred cCCCCCCcEEEee-ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEe-eccccceee-EEeecCCEEE
Q 004368 268 LEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL-TPRVVGVDT-AASHRGNHFF 344 (758)
Q Consensus 268 l~~~~~~~~~v~~-~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l-~~~~~~~~~-~~s~dg~~l~ 344 (758)
+............ .........++|||||++|+..+.+. .|.++|+.+++.+..+ ..+...+.. .|+|||++|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~---~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN---SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA 328 (365)
T ss_dssp EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS---CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC---EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE
Confidence 6544211111111 11222344688999999988765543 4788899887623333 223333433 4999999877
Q ss_pred EEEcC
Q 004368 345 ITRRS 349 (758)
Q Consensus 345 ~~s~~ 349 (758)
-.+.+
T Consensus 329 S~S~D 333 (365)
T 4h5i_A 329 SVSAA 333 (365)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 66554
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-05 Score=89.31 Aligned_cols=214 Identities=14% Similarity=0.094 Sum_probs=120.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceee-ccc-cCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~-~~~-~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+..+.+||||++||.... + ..|.++|..+ +... ... ......++|+||| .|+....+. .|.+++.
T Consensus 346 ~v~~~~~s~~g~~l~~~~~-d----g~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~-----~v~~~~~ 414 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASD-D----KTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-----TVKLWNR 414 (577)
T ss_dssp CEEEEEECTTSSEEEEEET-T----SEEEEEETTC-CEEEEEECCSSCEEEEEECTTSSCEEEEETTS-----EEEEECT
T ss_pred CEEEEEECCCCCEEEEEeC-C----CEEEEEcCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEeCCC-----EEEEEeC
Confidence 4567899999999987654 2 3688899754 4433 221 2235668999999 554433322 4666664
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITR 347 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s 347 (758)
.. +....+.... .....+.++||+++|+..+.+ ..|.++|+.+.. ...+......+.. .|+|||+.|+..+
T Consensus 415 ~~---~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~d---~~v~~w~~~~~~-~~~~~~~~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 415 NG---QLLQTLTGHS-SSVWGVAFSPDDQTIASASDD---KTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp TC---CEEEEEECCS-SCEEEEEECTTSSEEEEEETT---SEEEEEETTSCE-EEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred CC---CEEEEecCCC-CCeEEEEECCCCCEEEEEcCC---CEEEEEECCCCE-EEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 32 2222333222 233468899999998765543 346777875543 4555544444433 4899999776654
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeecc
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFI 426 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p 426 (758)
.+ ..|...+..+ .....+..+.. .+..+.+..+ .++++...++. +++|+.+ |+.+ ..+.
T Consensus 487 ~d-----~~i~iw~~~~-~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~dg~--v~lwd~~--~~~~--------~~~~ 546 (577)
T 2ymu_A 487 DD-----KTVKLWNRNG-QLLQTLTGHSS--SVRGVAFSPDGQTIASASDDKT--VKLWNRN--GQLL--------QTLT 546 (577)
T ss_dssp TT-----SEEEEEETTS-CEEEEEECCSS--CEEEEEECTTSSCEEEEETTSE--EEEECTT--SCEE--------EEEE
T ss_pred CC-----CEEEEEcCCC-CEEEEEeCCCC--CEEEEEEcCCCCEEEEEECcCE--EEEEeCC--CCEE--------EEEc
Confidence 43 3566667543 22222444433 3455555543 23445566664 7788764 5422 1222
Q ss_pred CcccccCCCCcccCCcEE
Q 004368 427 DPVYSIDPSESVFSSRIL 444 (758)
Q Consensus 427 ~~~~~i~~~~~~~d~~~l 444 (758)
.+...|..+.+++|++.+
T Consensus 547 ~h~~~v~~~~fs~dg~~l 564 (577)
T 2ymu_A 547 GHSSSVWGVAFSPDGQTI 564 (577)
T ss_dssp CCSSCEEEEEECTTSSCE
T ss_pred CCCCCEEEEEEcCCCCEE
Confidence 222233344556676655
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.41 E-value=8.2e-05 Score=76.97 Aligned_cols=195 Identities=12% Similarity=0.084 Sum_probs=111.6
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+....|+|||++|+-... ...|++||+.+++.... . -.+....++|+||+.++++...+. .|.++++.
T Consensus 57 ~v~~~~~~~~~~~l~s~s~-----d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~----~v~lWd~~ 127 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSD-----DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL----TVKLWNWE 127 (304)
T ss_dssp CEEEEEEEGGGTEEEEEET-----TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTS----CEEEEEGG
T ss_pred cEEEEEEeCCCCEEEEECC-----CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCC----eEEEEECC
Confidence 3667899999999986554 24799999999987642 1 123356799999995555554432 37777886
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcC-CCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccceee-EEee--cCCEEE
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGVDT-AASH--RGNHFF 344 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~-Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~~~~-~~s~--dg~~l~ 344 (758)
++.. ....+.. .......+.|+| |+..|+..+.+ ..|.++|+.++.....+.. ....+.. .+++ ++..|+
T Consensus 128 ~~~~-~~~~~~~-h~~~v~~v~~~p~~~~~l~sgs~D---~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 128 NNWA-LEQTFEG-HEHFVMCVAFNPKDPSTFASGCLD---RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp GTTE-EEEEECC-CCSCEEEEEECTTCTTEEEEEETT---SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred CCcc-hhhhhcc-cCCcEEEEEECCCCCCEEEEEeCC---CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence 5521 1223332 233445788999 56666544333 3467778866542222322 2233332 2544 555555
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
..+. + ..|...|+.+......+..+... +..+.+..+ .+++....++. +++|++..
T Consensus 203 s~s~-D----~~i~iWd~~~~~~~~~~~~h~~~--v~~~~~~p~~~~l~s~s~Dg~--i~iWd~~~ 259 (304)
T 2ynn_A 203 TASD-D----LTIKIWDYQTKSCVATLEGHMSN--VSFAVFHPTLPIIISGSEDGT--LKIWNSST 259 (304)
T ss_dssp EEET-T----SEEEEEETTTTEEEEEEECCSSC--EEEEEECSSSSEEEEEETTSC--EEEEETTT
T ss_pred EEcC-C----CeEEEEeCCCCccceeeCCCCCC--EEEEEECCCCCEEEEEcCCCe--EEEEECCC
Confidence 4433 2 46777788653222224334333 444444443 34456666765 77888763
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.40 E-value=4.3e-05 Score=80.91 Aligned_cols=196 Identities=8% Similarity=0.015 Sum_probs=107.2
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCc--eee-cc-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT--PVG-KP-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~--~~~-~~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
+..+.|||||++||.... ...|++||+.+++ ... .. -......++|+||+.++++...+. .|.++++
T Consensus 11 i~~~~~s~~~~~l~~~~~-----d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg----~i~vwd~ 81 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPN-----NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR----NAYVWTL 81 (372)
T ss_dssp CCEEEECTTSSEEEEECS-----SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS----CEEEEEE
T ss_pred eEEEEECCCCCEEEEEeC-----CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCC----eEEEEEC
Confidence 567899999999987643 2479999999886 332 11 123356799999994444443322 3777777
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCc---eEEeec-ccccee-eEEeecCCEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE---LRVLTP-RVVGVD-TAASHRGNHF 343 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~---~~~l~~-~~~~~~-~~~s~dg~~l 343 (758)
.++.......+.. .......+.|+|||++|+..+.+ +. |.++|+..+.. ...+.. ....+. ..|+|+++.|
T Consensus 82 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-~~--v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 82 KGRTWKPTLVILR-INRAARCVRWAPNEKKFAVGSGS-RV--ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp ETTEEEEEEECCC-CSSCEEEEEECTTSSEEEEEETT-SS--EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred CCCeeeeeEEeec-CCCceeEEEECCCCCEEEEEeCC-CE--EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 5542111112122 22334468899999998776543 33 44444444331 122212 122233 3489999877
Q ss_pred EEEEcCCCCCCcEEEEEeCCCC-----------------CcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEE
Q 004368 344 FITRRSDELFNSELLACPVDNT-----------------SETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTY 405 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~ 405 (758)
+..+.. ..|..+|+... +.....+. .....+..+.+..+ ..+++...++. +.+|
T Consensus 158 ~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~--i~i~ 229 (372)
T 1k8k_C 158 AAGSCD-----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDST--VCLA 229 (372)
T ss_dssp EEEETT-----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTE--EEEE
T ss_pred EEEcCC-----CCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCE--EEEE
Confidence 765543 34556664210 11111222 12234556666543 24445555664 7789
Q ss_pred EcCC
Q 004368 406 RLPA 409 (758)
Q Consensus 406 ~l~~ 409 (758)
++..
T Consensus 230 d~~~ 233 (372)
T 1k8k_C 230 DADK 233 (372)
T ss_dssp EGGG
T ss_pred ECCC
Confidence 8873
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.2e-05 Score=83.45 Aligned_cols=253 Identities=9% Similarity=0.106 Sum_probs=129.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCce-----------ee-cc-cc------------CcceeEEEecC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-----------VG-KP-LV------------GVTASVEWAGN 246 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~-----------~~-~~-~~------------~~~~~~~wspD 246 (758)
.+..++|||||++||.... + ..|+|||+.+++. .. .. -. +.+..++|+|+
T Consensus 30 ~V~~v~~s~~g~~la~g~~-d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDK-G----GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp SEEEEEECSSSSEEEEEET-T----SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cEEEEEECCCCCEEEEEcC-C----CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 4778899999999987654 2 3699999988762 11 11 11 33566899999
Q ss_pred C--eEEEEEeCCCCCCceEEEEEcCCCCCC-------------------------------------cEEEeeecCCcee
Q 004368 247 E--ALVYITMDEILRPDKAWLHKLEADQSN-------------------------------------DICLYHEKDDIYS 287 (758)
Q Consensus 247 g--~l~y~~~~~~~~~~~v~~~~l~~~~~~-------------------------------------~~~v~~~~~~~~~ 287 (758)
+ ..+++...+. .|.++++.++... ....+........
T Consensus 105 ~~~~~l~s~s~d~----~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 105 KNAAQFLLSTNDK----TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp CSSSEEEEEECSS----CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred CCcceEEEeCCCC----eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 7 4555554322 2444444331100 0012212222233
Q ss_pred eEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEe-------ecccccee-eEEeecC-CEEEEEEcCCCCCCcEE
Q 004368 288 LGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVL-------TPRVVGVD-TAASHRG-NHFFITRRSDELFNSEL 357 (758)
Q Consensus 288 ~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l-------~~~~~~~~-~~~s~dg-~~l~~~s~~~~~~~~~L 357 (758)
..+.|+|||++|+.. . ...|.++|+.+.. ....+ ......+. ..|+|+| ..|+..+.+ ..|
T Consensus 181 ~~~~~~~~~~~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i 251 (447)
T 3dw8_B 181 NSISINSDYETYLSA--D--DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK-----GTI 251 (447)
T ss_dssp CEEEECTTSSEEEEE--C--SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT-----SCE
T ss_pred EEEEEcCCCCEEEEe--C--CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC-----CeE
Confidence 468899999988753 2 4567788887432 12211 12222232 2489998 655555443 357
Q ss_pred EEEeCCCCCcc---eeeecCCCC-----------ceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCcee
Q 004368 358 LACPVDNTSET---TVLIPHRES-----------VKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 423 (758)
Q Consensus 358 ~~~~~~~~~~~---~~l~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i 423 (758)
..+|+...... ...+....+ ..+..+.+..+.-++....+ ..+.+|++...+..+..+.....+
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCEESCGGG
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCccccceeeccccc
Confidence 77777653220 123333222 14566666654322223333 458899987534433211111000
Q ss_pred ec-------cCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEE
Q 004368 424 EF-------IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV 468 (758)
Q Consensus 424 ~~-------p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~ 468 (758)
.- ....+.+....+++++..+ ++.+ .-..++.||+.+++..
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s---~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVV-MTGS---YNNFFRMFDRNTKRDI 377 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEE-EEEC---STTEEEEEETTTCCEE
T ss_pred cccccccccccccccceEEEECCCCCEE-EEec---cCCEEEEEEcCCCcce
Confidence 00 0000011124566777766 3332 3368999999988743
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.38 E-value=4.5e-07 Score=95.34 Aligned_cols=110 Identities=13% Similarity=0.059 Sum_probs=79.5
Q ss_pred CCEEEEecCCCccC--------CCCCC----ChHHHHHHHcCcE---EEEEecCCCCCCchhHHhcccccCCcChHhHHH
Q 004368 516 DPLLLYGYGSYEIC--------NDPAF----NSSRLSLLDRGFI---FAIAQIRGGGELGRQWYENGKFLKKKNTFTDFI 580 (758)
Q Consensus 516 ~P~vl~~hGg~~~~--------~~~~~----~~~~~~l~~~G~~---v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~ 580 (758)
.+.||++||..+.. ....| ......|.++||. |+.+|+||.|.....- ........++++.
T Consensus 40 ~~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~l~~~L~~~Gy~~~~V~~~D~~g~G~S~~~~----~~~~~~~~~~~l~ 115 (342)
T 2x5x_A 40 KTPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLSSSEQGSAQ----YNYHSSTKYAIIK 115 (342)
T ss_dssp SCCEEEECCTTCCGGGGGCCCCCCTTTCCCSSCHHHHHHHTTCCTTSEEEECCSCHHHHTCGG----GCCBCHHHHHHHH
T ss_pred CCeEEEECCcCCCcccccccccccccccccHHHHHHHHHhCCCCCCeEEEEeCCCCCccCCcc----ccCCHHHHHHHHH
Confidence 34488899965532 23446 6778889999998 9999999876421110 0111224467888
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhC--CCceeEEEEcCCccc
Q 004368 581 ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFVD 631 (758)
Q Consensus 581 ~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~~d 631 (758)
+.++.+.++- ..+++.++|||+||.++..++.++ |++++++|+.+|...
T Consensus 116 ~~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 116 TFIDKVKAYT--GKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp HHHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCTT
T ss_pred HHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCcc
Confidence 8888877653 247899999999999999999988 899999998877543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.37 E-value=4.3e-05 Score=81.90 Aligned_cols=199 Identities=13% Similarity=0.077 Sum_probs=119.5
Q ss_pred EEEeeEEEC----CCCCE-EEEEEeCCCCeEEEEEEEECCC------Cceee------cc--------ccCcceeEEEec
Q 004368 191 YSVGCFQVS----PDNKL-VAYAEDTKGDEIYTVYVIDIET------GTPVG------KP--------LVGVTASVEWAG 245 (758)
Q Consensus 191 ~~i~~~~~S----PDG~~-lAy~~~~~G~e~~~l~v~dl~~------g~~~~------~~--------~~~~~~~~~wsp 245 (758)
..+..+.|+ |||++ |+.... +| .|++||+.+ ++... .. -......++|+|
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 196 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDV-KG----TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE 196 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEET-TS----CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT
T ss_pred CcEEEEEEeeccCCCCceEEEEEeC-CC----cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC
Confidence 347788999 99999 665543 34 588899887 54332 11 122356689999
Q ss_pred CCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeee---c--CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 246 NEALVYITMDEILRPDKAWLHKLEADQSNDICLYHE---K--DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 246 Dg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~---~--~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
|+ ++++...+ ..|.++++.++ +....+.. . .......+.|+||+++|+..+.+.....|.++|+.+++
T Consensus 197 ~~-~l~~~~~d----g~i~i~d~~~~--~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 197 RG-LIATGFNN----GTVQISELSTL--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 269 (397)
T ss_dssp TS-EEEEECTT----SEEEEEETTTT--EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred Cc-eEEEEeCC----CcEEEEECCCC--ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc
Confidence 99 66665433 25888888765 33333433 1 02334478899999998876654333678999998776
Q ss_pred ceEEeec-------------ccccee-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeee------cC------
Q 004368 321 ELRVLTP-------------RVVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLI------PH------ 374 (758)
Q Consensus 321 ~~~~l~~-------------~~~~~~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~------~~------ 374 (758)
....+.. ....+. ..|+|+|+.|+..+.. ..|..+++........+. .+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (397)
T 1sq9_A 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-----GKLRFWDVKTKERITTLNMHCDDIEIEEDILA 344 (397)
T ss_dssp EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTTEEEEEEECCGGGCSSGGGCCC
T ss_pred ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCceeEEEecccCcccchhhhhc
Confidence 2333332 223333 3489999977765532 467888886532222232 12
Q ss_pred -------CCCceeeeEEEeCC-----------EEEEEEEeCCeeEEEEEEcC
Q 004368 375 -------RESVKLQDIQLFID-----------HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 375 -------~~~~~~~~~~~~~~-----------~l~~~~~~~g~~~l~v~~l~ 408 (758)
.....+..+.+..+ .++++...+|. +.+|++.
T Consensus 345 g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~--i~iw~~~ 394 (397)
T 1sq9_A 345 VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS--IRWFREA 394 (397)
T ss_dssp BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE--EEEEEEE
T ss_pred cccccccccCCceeEEEeccccccccccccccceEEEecCCCc--EEEEEcC
Confidence 00334667777776 47777777775 6688776
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00013 Score=76.89 Aligned_cols=193 Identities=12% Similarity=0.028 Sum_probs=107.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++|+-... + ..|++||+.+++.... . -.+....++|+|||..+++...+. .|.++++.
T Consensus 78 ~V~~~~~~~~~~~l~s~s~-D----~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~----~i~~wd~~ 148 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSW-D----KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAER----EIKLWNIL 148 (343)
T ss_dssp CEEEEEECSSTTEEEEEET-T----SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTS----CEEEEESS
T ss_pred ceEEEEECCCCCEEEEEcC-C----CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCC----EEEEEecc
Confidence 4678899999999874432 2 4799999999887642 1 122356699999994444444322 37777775
Q ss_pred CCCCCcEEEeee--cCCceeeEEEEcCCC----------cEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEE
Q 004368 270 ADQSNDICLYHE--KDDIYSLGLQASESK----------KFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAA 336 (758)
Q Consensus 270 ~~~~~~~~v~~~--~~~~~~~~~~~S~Dg----------~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~ 336 (758)
.. ....... ........+.|+|++ .+|+..+. . ..|.++|..... ...+......+. ..|
T Consensus 149 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~-d--~~i~iwd~~~~~-~~~~~~h~~~v~~~~~ 221 (343)
T 2xzm_R 149 GE---CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW-D--GRLKVWNTNFQI-RYTFKAHESNVNHLSI 221 (343)
T ss_dssp SC---EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET-T--SEEEEEETTTEE-EEEEECCSSCEEEEEE
T ss_pred CC---ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC-C--CEEEEEcCCCce-eEEEcCccccceEEEE
Confidence 32 1222211 122334467788887 45544332 2 346666743321 233333333333 348
Q ss_pred eecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 337 SHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 337 s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+|+|+.|+..+.+ ..|..+|+.............. .+..+.+..+..++....++. +++|++..
T Consensus 222 s~~g~~l~sgs~d-----g~v~iwd~~~~~~~~~~~~~~~--~v~~v~~sp~~~~la~~~d~~--v~iw~~~~ 285 (343)
T 2xzm_R 222 SPNGKYIATGGKD-----KKLLIWDILNLTYPQREFDAGS--TINQIAFNPKLQWVAVGTDQG--VKIFNLMT 285 (343)
T ss_dssp CTTSSEEEEEETT-----CEEEEEESSCCSSCSEEEECSS--CEEEEEECSSSCEEEEEESSC--EEEEESSS
T ss_pred CCCCCEEEEEcCC-----CeEEEEECCCCcccceeecCCC--cEEEEEECCCCCEEEEECCCC--EEEEEeCC
Confidence 9999977665443 4577777743222222232222 355666665433333444443 77888864
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.8e-07 Score=100.63 Aligned_cols=110 Identities=9% Similarity=0.048 Sum_probs=74.6
Q ss_pred CCCCEEEEecCCCccCCCCCCCh-HHHHHHHc-CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNS-SRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~-G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 591 (758)
...|+||++||..+.. ...|.. ....|+++ ||.|+++|+||+|..... .+. ..-....+|+.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~y~--~~~--~~~~~~a~~l~~ll~~L~~~~g 142 (450)
T 1rp1_A 68 TDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKGSQTSYT--QAA--NNVRVVGAQVAQMLSMLSANYS 142 (450)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHHHSSCHH--HHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccccCCcch--HHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999954332 223433 23456654 899999999997654311 110 0011123566777777764433
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
++.+++.++|||+||.+++.++.++|+ ++.+++..|.
T Consensus 143 ~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa 179 (450)
T 1rp1_A 143 YSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPV 179 (450)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCC
T ss_pred CChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCcc
Confidence 567899999999999999999999999 8888876654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00017 Score=77.73 Aligned_cols=193 Identities=13% Similarity=0.074 Sum_probs=110.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++||.... + ..|+|||+.+++.... . -......++|+|||..+++...+ ..+.++++.
T Consensus 125 ~v~~v~~s~dg~~l~s~~~-d----~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d----~~v~iwd~~ 195 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAE-D----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD----RTVRIWDLR 195 (393)
T ss_dssp BEEEEEECTTSSEEEEEET-T----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETT
T ss_pred eEEEEEECCCCCEEEEEcC-C----CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCC----CcEEEEECC
Confidence 3778899999999986654 2 3699999999876542 1 12235669999999444444432 247788887
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcC-CCcEEEEEecCCcceEEEEEeCCCCCceEEee-------cccccee-eEEeecC
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLT-------PRVVGVD-TAASHRG 340 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~-Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~-------~~~~~~~-~~~s~dg 340 (758)
++. ....+...+ ....+.++| ||++|+..+.+ ..|.++|+.++.....+. .....+. ..|+|+|
T Consensus 196 ~~~--~~~~~~~~~--~v~~~~~~~~~~~~l~~~s~d---~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g 268 (393)
T 1erj_A 196 TGQ--CSLTLSIED--GVTTVAVSPGDGKYIAAGSLD---RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268 (393)
T ss_dssp TTE--EEEEEECSS--CEEEEEECSTTCCEEEEEETT---SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred CCe--eEEEEEcCC--CcEEEEEECCCCCEEEEEcCC---CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC
Confidence 662 233333222 234677998 88888765543 236777887765222221 1112222 2489999
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCCCCCc-----------ce-eeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEc
Q 004368 341 NHFFITRRSDELFNSELLACPVDNTSE-----------TT-VLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~~~~~-----------~~-~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l 407 (758)
+.|+..+.+ ..|..+|+..... .. .+..+.. .+..+.+..+ ..++....++. +.+|++
T Consensus 269 ~~l~s~s~d-----~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs~D~~--v~iwd~ 339 (393)
T 1erj_A 269 QSVVSGSLD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYILSGSKDRG--VLFWDK 339 (393)
T ss_dssp SEEEEEETT-----SEEEEEEC---------------CEEEEEECCSS--CEEEEEECGGGCEEEEEETTSE--EEEEET
T ss_pred CEEEEEeCC-----CEEEEEECCCCCCcccccCCCCCcceEEEecccC--cEEEEEECCCCCEEEEEeCCCe--EEEEEC
Confidence 977655433 3466666543111 00 1222222 2445555443 34455666664 778887
Q ss_pred CC
Q 004368 408 PA 409 (758)
Q Consensus 408 ~~ 409 (758)
..
T Consensus 340 ~~ 341 (393)
T 1erj_A 340 KS 341 (393)
T ss_dssp TT
T ss_pred CC
Confidence 63
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00012 Score=79.34 Aligned_cols=193 Identities=11% Similarity=0.070 Sum_probs=112.7
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|+|||++||-... + ..|++||+.+++.... . -......++|+|||.++++...+ ..+.++++.
T Consensus 152 ~V~~v~~~~~~~~l~sgs~-D----~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D----~~i~~wd~~ 222 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSA-D----MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD----KTIKMWEVQ 222 (410)
T ss_dssp CEEEEEECTTSSEEEEEET-T----SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT----SEEEEEETT
T ss_pred cEEEEEEcCCCCEEEEEeC-C----CeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECC
Confidence 4678899999998875543 2 3699999998876652 1 12235679999999544454432 258888987
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeec---------
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHR--------- 339 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~d--------- 339 (758)
++. ....+... ......+.+++||++|+..+.+ ..|.++|+.+++....+......+.. .|+|+
T Consensus 223 ~~~--~~~~~~~h-~~~v~~~~~~~~g~~l~s~s~D---~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 296 (410)
T 1vyh_C 223 TGY--CVKTFTGH-REWVRMVRPNQDGTLIASCSND---QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA 296 (410)
T ss_dssp TCC--EEEEEECC-SSCEEEEEECTTSSEEEEEETT---SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred CCc--EEEEEeCC-CccEEEEEECCCCCEEEEEcCC---CeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhh
Confidence 763 33344433 2334467899999987765543 23667787776522233333222322 36665
Q ss_pred -----------CCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEc
Q 004368 340 -----------GNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 340 -----------g~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l 407 (758)
|..|+.. ..+ ..|..+|+.+......+..+.. .+..+.+..+ ..++....++. +++|++
T Consensus 297 ~~~~~~~~~~~g~~l~sg-s~D----~~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~--i~vwd~ 367 (410)
T 1vyh_C 297 TGSETKKSGKPGPFLLSG-SRD----KTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKT--LRVWDY 367 (410)
T ss_dssp CSCC-------CCEEEEE-ETT----SEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTE--EEEECC
T ss_pred ccccccccCCCCCEEEEE-eCC----CeEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCe--EEEEEC
Confidence 3434333 332 4577788865322222443432 3455555543 33445666664 778887
Q ss_pred C
Q 004368 408 P 408 (758)
Q Consensus 408 ~ 408 (758)
.
T Consensus 368 ~ 368 (410)
T 1vyh_C 368 K 368 (410)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00011 Score=79.89 Aligned_cols=251 Identities=12% Similarity=0.062 Sum_probs=133.2
Q ss_pred EEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccC---cceeEEEecCCeEEEE
Q 004368 177 LILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG---VTASVEWAGNEALVYI 252 (758)
Q Consensus 177 vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~---~~~~~~wspDg~l~y~ 252 (758)
-+||...+.. +| -+.-+.||++ +.||.+.+ .+|+|||+.+|+.... ...+ .+..++|+|||.++.+
T Consensus 95 ~~l~ap~~~~--d~-y~~~l~wS~~-n~lAvgld------~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~las 164 (420)
T 4gga_A 95 RILDAPEIRN--DY-YLNLVDWSSG-NVLAVALD------NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV 164 (420)
T ss_dssp EEEECTTCCC--CT-TCBCEEECTT-SEEEEEET------TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred eEEECCCCcc--cc-cceeEEECCC-CEEEEEeC------CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEE
Confidence 4467766643 22 2456799986 48888764 3799999999987653 3322 3577999999954455
Q ss_pred EeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeeccccc
Q 004368 253 TMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVG 331 (758)
Q Consensus 253 ~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~ 331 (758)
...+. .|.++++.++ +....+..... .... ++.|++.|+..+.+ ..+++.|..... ....+......
T Consensus 165 gs~Dg----~v~iWd~~~~--~~~~~~~~h~~-~v~~--~s~~~~~l~sgs~d---~~i~~~d~~~~~~~~~~~~~h~~~ 232 (420)
T 4gga_A 165 GTSSA----EVQLWDVQQQ--KRLRNMTSHSA-RVGS--LSWNSYILSSGSRS---GHIHHHDVRVAEHHVATLSGHSQE 232 (420)
T ss_dssp EETTS----CEEEEETTTT--EEEEEECCCSS-CEEE--EEEETTEEEEEETT---SEEEEEETTSSSCEEEEEECCSSC
T ss_pred EECCC----eEEEEEcCCC--cEEEEEeCCCC-ceEE--EeeCCCEEEEEeCC---CceeEeeecccceeeEEecccccc
Confidence 54332 4778888765 23333333222 2223 44567766543332 345667766544 23334333333
Q ss_pred ee-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcce-e-eecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEE
Q 004368 332 VD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETT-V-LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYR 406 (758)
Q Consensus 332 ~~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~-~-l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~ 406 (758)
+. ..++++|+.++...+++ .+...+........ . .........+..+.+. +..++++........|++|+
T Consensus 233 ~~~~~~~~~g~~l~s~~~D~-----~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd 307 (420)
T 4gga_A 233 VCGLRWAPDGRHLASGGNDN-----LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307 (420)
T ss_dssp EEEEEECTTSSEEEEEETTS-----CEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEE
T ss_pred eeeeeecCCCCeeeeeeccc-----cceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEe
Confidence 33 34889999877766543 35555654322111 1 1111122234444443 34454443322223588898
Q ss_pred cCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 407 LPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 407 l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
+.. +... ..+.... .+....+.++++.++....+ .-..|+.+|..+++
T Consensus 308 ~~t-~~~~------~~~~~~~---~v~~~~~~~~~~~lv~~sg~--~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 308 VCS-GACL------SAVDAHS---QVCSILWSPHYKELISGHGF--AQNQLVIWKYPTMA 355 (420)
T ss_dssp TTT-TEEE------EEEECSS---CEEEEEEETTTTEEEEEECT--TTCCEEEEETTTCC
T ss_pred CCc-cccc------eeecccc---ceeeeeecCCCCeEEEEEec--CCCEEEEEECCCCc
Confidence 874 3321 1111111 11123345667666554322 22468888988876
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=7.8e-05 Score=78.30 Aligned_cols=197 Identities=9% Similarity=0.081 Sum_probs=109.9
Q ss_pred EEeeEEECCC---CCEEEEEEeCCCCeEEEEEEEECCCCc-eeec-c-ccCcceeE------EEecCCeEEEEEeCCCCC
Q 004368 192 SVGCFQVSPD---NKLVAYAEDTKGDEIYTVYVIDIETGT-PVGK-P-LVGVTASV------EWAGNEALVYITMDEILR 259 (758)
Q Consensus 192 ~i~~~~~SPD---G~~lAy~~~~~G~e~~~l~v~dl~~g~-~~~~-~-~~~~~~~~------~wspDg~l~y~~~~~~~~ 259 (758)
.+..+.|+|| |++|+.... +| .|++||+.+++ .... . -......+ +|+||+.++++...+.
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~-- 139 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDF-GG----NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG-- 139 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEET-TS----CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS--
T ss_pred cEEEEEEcCCCCCCceEEEecC-CC----eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCC--
Confidence 4678899999 688876553 33 59999999887 3321 1 12224445 4578884444544322
Q ss_pred CceEEEEEcCCCCCCcEEEeeecC---CceeeEEE----EcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce
Q 004368 260 PDKAWLHKLEADQSNDICLYHEKD---DIYSLGLQ----ASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV 332 (758)
Q Consensus 260 ~~~v~~~~l~~~~~~~~~v~~~~~---~~~~~~~~----~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 332 (758)
.|.++++.++.. ....+.... ......+. |++|+++|+..+.+ ..|.++|+.+++ ..........+
T Consensus 140 --~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~-~~~~~~~~~~v 212 (357)
T 3i2n_A 140 --TVKVWDPRQKDD-PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN---GDIKLFDLRNMA-LRWETNIKNGV 212 (357)
T ss_dssp --CEEEECTTSCSS-CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT---SEEEEEETTTTE-EEEEEECSSCE
T ss_pred --eEEEEeCCCCCC-cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC---CeEEEEECccCc-eeeecCCCCce
Confidence 477888876632 223332211 11222344 78999998876543 368888998876 43333333333
Q ss_pred e-eEEee---cCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeee---cCCCCceeeeEEEeCCE--EEEEEEeCCeeEEE
Q 004368 333 D-TAASH---RGNHFFITRRSDELFNSELLACPVDNTSETTVLI---PHRESVKLQDIQLFIDH--LAVYEREGGLQKIT 403 (758)
Q Consensus 333 ~-~~~s~---dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~l~ 403 (758)
. ..|+| +++.|+..+.. ..|..+|+........+. .......+..+.+..+. ++++...+|. +.
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~ 285 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLE-----GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG--LH 285 (357)
T ss_dssp EEEEESCSSSSCCEEEEEEST-----TEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE--EE
T ss_pred EEEEcCCCCCCCCEEEEECCC-----CeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc--EE
Confidence 3 34888 88877766543 346666654311111111 01123345667777653 5666677775 67
Q ss_pred EEEcCC
Q 004368 404 TYRLPA 409 (758)
Q Consensus 404 v~~l~~ 409 (758)
+|++..
T Consensus 286 iwd~~~ 291 (357)
T 3i2n_A 286 LWKYEY 291 (357)
T ss_dssp EEEEEC
T ss_pred EeecCC
Confidence 787764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=7e-05 Score=80.04 Aligned_cols=201 Identities=8% Similarity=-0.012 Sum_probs=112.9
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc-ccCcceeEEEecCCe-EEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNEA-LVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg~-l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++|+.... + ..|++||+.+....... -.+....++|+|++. ++++...+. .|.++++.
T Consensus 165 ~v~~~~~~~~~~~l~~~~~-d----~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~ 235 (383)
T 3ei3_B 165 WYCCVDVSVSRQMLATGDS-T----GRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA----TVKLWDLR 235 (383)
T ss_dssp CEEEEEEETTTTEEEEEET-T----SEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS----EEEEEEGG
T ss_pred CeEEEEECCCCCEEEEECC-C----CCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC----EEEEEeCC
Confidence 3678899999999886543 2 37999999543333222 223356799999994 777765432 57888887
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcC-CCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-------ccceeeEEeecCC
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-------VVGVDTAASHRGN 341 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~-Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-------~~~~~~~~s~dg~ 341 (758)
+.......+...........+.|+| ||++|+..+.+ ..|.++|+.+++....+... ...+...|+|++.
T Consensus 236 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 312 (383)
T 3ei3_B 236 NIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQR---NEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYD 312 (383)
T ss_dssp GCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESS---SEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSS
T ss_pred CCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCC---CcEEEEECCCCccccccccccccccccccceEEeccCCCC
Confidence 6432222222222333445788999 99998765543 45788888776522222211 1112223566666
Q ss_pred EEEEEEcCC----CCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcC
Q 004368 342 HFFITRRSD----ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 342 ~l~~~s~~~----~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
.+.+....+ +..+..|..+|+.+......+..+.....+..+.+. +..|+ ... ++ .+.+|+++
T Consensus 313 ~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~-s~s-d~--~i~iw~~~ 381 (383)
T 3ei3_B 313 LIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLA-SGM-GF--NILIWNRE 381 (383)
T ss_dssp EEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEE-EEE-TT--EEEEEECC
T ss_pred ceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEE-Eec-CC--cEEEEecC
Confidence 554433211 123467888888763322223332222223333444 44444 333 55 47788876
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00017 Score=77.69 Aligned_cols=234 Identities=12% Similarity=0.076 Sum_probs=130.9
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc--cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL--VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~--~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
+..+.||+ +..++...+ | .|++||+.+|+.... .. ......++|+|||.++++...++ .|.++++.
T Consensus 96 ~~~~~~s~-~~l~~~~~d--~----~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg----~i~iwd~~ 164 (401)
T 4aez_A 96 LNLLDWSN-LNVVAVALE--R----NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG----LVDIYDVE 164 (401)
T ss_dssp CBCEEECT-TSEEEEEET--T----EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS----CEEEEETT
T ss_pred EEEEeecC-CCEEEEECC--C----eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC----eEEEEECc
Confidence 45578886 445554332 3 699999999987653 22 23366799999994444443322 47888887
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeeccccceee-EEeecCCEEEEEE
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDT-AASHRGNHFFITR 347 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~-~~s~dg~~l~~~s 347 (758)
++ +....+.... .....+.| +++.|+..+.+ ..|.++|+.... ....+......+.. .|+|+|+.|+..+
T Consensus 165 ~~--~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 165 SQ--TKLRTMAGHQ-ARVGCLSW--NRHVLSSGSRS---GAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp TC--CEEEEECCCS-SCEEEEEE--ETTEEEEEETT---SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CC--eEEEEecCCC-CceEEEEE--CCCEEEEEcCC---CCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 66 2333343322 22335667 55666554432 457788887433 23444444444433 4899999877765
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC--CEEEEEEE--eCCeeEEEEEEcCCCCCccccccCCcee
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYER--EGGLQKITTYRLPAVGEPLKSLQGGKSV 423 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~l~~~~~--~~g~~~l~v~~l~~~g~~~~~l~~~~~i 423 (758)
.+ ..|..+|+.+......+..+. ..+..+.+.. ..+++... .++ .+.+|++.. +..+ ..+
T Consensus 237 ~d-----~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~gs~d~--~i~i~d~~~-~~~~------~~~ 300 (401)
T 4aez_A 237 ND-----NVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLATGGGTMDK--QIHFWNAAT-GARV------NTV 300 (401)
T ss_dssp TT-----SCEEEEETTCSSEEEEECCCS--SCCCEEEECTTSTTEEEEECCTTTC--EEEEEETTT-CCEE------EEE
T ss_pred CC-----CeEEEccCCCCCccEEecCCc--ceEEEEEECCCCCCEEEEecCCCCC--EEEEEECCC-CCEE------EEE
Confidence 54 357777876522222233333 2345666654 45665544 344 488999874 3322 112
Q ss_pred eccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 424 EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 424 ~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
... ..+....+++++..++....+ .-..+..+|+.+++
T Consensus 301 ~~~---~~v~~~~~s~~~~~l~~~~g~--~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 301 DAG---SQVTSLIWSPHSKEIMSTHGF--PDNNLSIWSYSSSG 338 (401)
T ss_dssp ECS---SCEEEEEECSSSSEEEEEECT--TTCEEEEEEEETTE
T ss_pred eCC---CcEEEEEECCCCCeEEEEeec--CCCcEEEEecCCcc
Confidence 211 123334566777776554322 23578888877765
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=7.2e-05 Score=78.57 Aligned_cols=247 Identities=9% Similarity=-0.001 Sum_probs=131.9
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c--ccCcceeEEEecC---CeEEEEEeCCCCCCceEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P--LVGVTASVEWAGN---EALVYITMDEILRPDKAWL 265 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~--~~~~~~~~~wspD---g~l~y~~~~~~~~~~~v~~ 265 (758)
.+..+.|||||+.++.+..... +...|+|||+.+++.... . -......++|+|+ |.++++...+. .+.+
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg----~i~i 94 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFAR-GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG----NLHI 94 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--C-CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS----CEEE
T ss_pred ceEEEEEcCCCceEEEecCccC-CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC----eEEE
Confidence 4778899999988776654311 136799999999886543 2 2233566899999 55545544322 4788
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEE------EEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeecccc----cee-
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGL------QASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVV----GVD- 333 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~------~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~----~~~- 333 (758)
+++.++.. ....+...... ...+ .|++|+++|+..+.+ ..|.++|+.++. ....+..... .+.
T Consensus 95 wd~~~~~~-~~~~~~~~~~~-v~~~~~~~~~~~s~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 95 WNLEAPEM-PVYSVKGHKEI-INAIDGIGGLGIGEGAPEIVTGSRD---GTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp ECTTSCSS-CSEEECCCSSC-EEEEEEESGGGCC-CCCEEEEEETT---SCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred EeCCCCCc-cEEEEEecccc-eEEEeeccccccCCCccEEEEEeCC---CeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 88877641 23333332222 2233 468899988765543 347788887764 3444433221 111
Q ss_pred eE----EeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC----CEEEEEEEeCCeeEEEEE
Q 004368 334 TA----ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI----DHLAVYEREGGLQKITTY 405 (758)
Q Consensus 334 ~~----~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~l~v~ 405 (758)
.. |+++++.++..+.. ..|..+|+.+. .......... .+..+.+.. +..+++...+|. +.+|
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~-~~~~~~~~~~--~v~~~~~~~~~~~~~~l~~~~~dg~--i~i~ 239 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNM-ALRWETNIKN--GVCSLEFDRKDISMNKLVATSLEGK--FHVF 239 (357)
T ss_dssp EEEECCCC-CCCEEEEEETT-----SEEEEEETTTT-EEEEEEECSS--CEEEEEESCSSSSCCEEEEEESTTE--EEEE
T ss_pred EEEEeccCCCCCEEEEEccC-----CeEEEEECccC-ceeeecCCCC--ceEEEEcCCCCCCCCEEEEECCCCe--EEEE
Confidence 11 56888877766543 46888888763 2223333332 355666653 344455566664 6778
Q ss_pred EcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCC
Q 004368 406 RLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMG 465 (758)
Q Consensus 406 ~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~ 465 (758)
++.. +.....+. ...+......+..+.+++++..++++.+. -..+..+|+..+
T Consensus 240 d~~~-~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~ 292 (357)
T 3i2n_A 240 DMRT-QHPTKGFA---SVSEKAHKSTVWQVRHLPQNRELFLTAGG---AGGLHLWKYEYP 292 (357)
T ss_dssp EEEE-EETTTEEE---EEEEECCSSCEEEEEEETTEEEEEEEEET---TSEEEEEEEECC
T ss_pred eCcC-CCccccee---eeccCCCcCCEEEEEECCCCCcEEEEEeC---CCcEEEeecCCC
Confidence 8763 22111000 00111222233334556666544444432 235666665544
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.30 E-value=7.3e-05 Score=78.17 Aligned_cols=237 Identities=8% Similarity=0.039 Sum_probs=130.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCc----eeec-cccCcceeEEEecCCe-EEEEEeCCCCCCceEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT----PVGK-PLVGVTASVEWAGNEA-LVYITMDEILRPDKAWL 265 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~----~~~~-~~~~~~~~~~wspDg~-l~y~~~~~~~~~~~v~~ 265 (758)
.+..+.|||||++|+.+.. + ..|++||+.+++ .... ........++|+||+. ++++...+. .|++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~-d----~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~~ 83 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSW-D----GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG----EILK 83 (342)
T ss_dssp CEEEEEEEGGGTEEEEEET-T----SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS----CEEE
T ss_pred cEEEEEEcCCCCEEEEEcC-C----CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCC----eEEE
Confidence 4678899999999987653 2 368999998877 3322 2233356799999997 777765432 4888
Q ss_pred EEc-CCCCCCcEEEeeec-CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCC---------CCceEEeecccccee-
Q 004368 266 HKL-EADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK---------PEELRVLTPRVVGVD- 333 (758)
Q Consensus 266 ~~l-~~~~~~~~~v~~~~-~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~---------~~~~~~l~~~~~~~~- 333 (758)
+++ .++. ...+... .......+.|+| ++.|+..+.+ ..|.++|+.+ ++....+. ....+.
T Consensus 84 wd~~~~~~---~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 155 (342)
T 1yfq_A 84 VDLIGSPS---FQALTNNEANLGICRICKYG-DDKLIAASWD---GLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFT 155 (342)
T ss_dssp ECSSSSSS---EEECBSCCCCSCEEEEEEET-TTEEEEEETT---SEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEE
T ss_pred EEeccCCc---eEeccccCCCCceEEEEeCC-CCEEEEEcCC---CeEEEEcccccccccccccCCeeeEEe-eCCceEE
Confidence 888 6652 2333330 222344678999 8887765433 3467777654 33111111 222222
Q ss_pred eEEeecCCEEEEEEcCCCCCCcEEEEEeCCC-CCcceeeecCCCCceeeeEEEeC--CEEEEEEEeCCeeEEEEEEcCCC
Q 004368 334 TAASHRGNHFFITRRSDELFNSELLACPVDN-TSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAV 410 (758)
Q Consensus 334 ~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~l~v~~l~~~ 410 (758)
..|++++ ++..+. + ..|..+++.. ...............+..+.+.. ..++++...+|. +.+|+++..
T Consensus 156 ~~~~~~~--l~~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i~i~~~~~~ 226 (342)
T 1yfq_A 156 MDTNSSR--LIVGMN-N----SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR--VAVEFFDDQ 226 (342)
T ss_dssp EEECSSE--EEEEES-T----TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE--EEEEECCTT
T ss_pred EEecCCc--EEEEeC-C----CeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc--EEEEEEcCC
Confidence 2366655 444433 2 4677788765 32222222222233456677764 344555566665 667777753
Q ss_pred C-----CccccccCCceeeccCc---------ccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 411 G-----EPLKSLQGGKSVEFIDP---------VYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 411 g-----~~~~~l~~~~~i~~p~~---------~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
+ ... ..+... .+.+..+.++++++.++. .+ .-..++.+|+.+++
T Consensus 227 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~---~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 227 GDDYNSSKR--------FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT-AG---SDGIISCWNLQTRK 284 (342)
T ss_dssp CCSTTCTTC--------EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE-EE---TTSCEEEEETTTTE
T ss_pred Ccccccccc--------eeeecccccccccccceeEEEEEEcCCCCEEEE-ec---CCceEEEEcCccHh
Confidence 1 211 111111 112333445666665533 22 23468889988876
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00057 Score=77.18 Aligned_cols=253 Identities=13% Similarity=0.071 Sum_probs=134.0
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECC--CCceeec-cccCcceeEEEe----cCCeEEEEEeCCCCCCceEEEE
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE--TGTPVGK-PLVGVTASVEWA----GNEALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~--~g~~~~~-~~~~~~~~~~ws----pDg~l~y~~~~~~~~~~~v~~~ 266 (758)
..+.+||||++|.. .+..| .|.++|+. +++.... .......++++| |||+.+|+.... +..|..+
T Consensus 200 ~~v~~SpDGr~lyv-~~~dg----~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~---~~~v~Vi 271 (567)
T 1qks_A 200 HISRLSASGRYLFV-IGRDG----KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW---PPQYVIM 271 (567)
T ss_dssp EEEEECTTSCEEEE-EETTS----EEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE---TTEEEEE
T ss_pred cceEECCCCCEEEE-EcCCC----eEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEcc---CCeEEEE
Confidence 36799999999654 44433 69999996 7666542 222224568999 699555555422 2357777
Q ss_pred EcCCCCCCcEEEeeec--CC-----c-eeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCce--EEeeccccceeeEE
Q 004368 267 KLEADQSNDICLYHEK--DD-----I-YSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL--RVLTPRVVGVDTAA 336 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~--~~-----~-~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~ 336 (758)
+..+.+....+..... +. . ....+..|+++..++++. ..+.+|+++|..+.+.+ ..+.....-....|
T Consensus 272 D~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~--~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~ 349 (567)
T 1qks_A 272 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV--KETGKILLVDYTDLNNLKTTEISAERFLHDGGL 349 (567)
T ss_dssp ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred ECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe--cCCCeEEEEecCCCccceeeeeeccccccCceE
Confidence 7666532111111110 10 1 123466788887766654 45568999998775411 11111111112349
Q ss_pred eecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecC-CCCcee-eeEEE-eCC-EEEEEEEeCCeeEEEEEEcCCCCC
Q 004368 337 SHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPH-RESVKL-QDIQL-FID-HLAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 337 s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~-~~~~~~-~~~~~-~~~-~l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
++||+++++..+.. .+|.++|+++. .....++- ...... .+..+ ..+ .-++....-+...+.+++.+..+.
T Consensus 350 ~pdgr~~~va~~~s----n~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~ 424 (567)
T 1qks_A 350 DGSHRYFITAANAR----NKLVVIDTKEG-KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 424 (567)
T ss_dssp CTTSCEEEEEEGGG----TEEEEEETTTT-EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred CCCCCEEEEEeCCC----CeEEEEECCCC-cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCC
Confidence 99999888776653 46888998763 32223332 111111 12222 322 334445555555688998875322
Q ss_pred ccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCC-----CEEEEEECCCC
Q 004368 413 PLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTP-----PSVYDYDMDMG 465 (758)
Q Consensus 413 ~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P-----~~i~~~d~~~~ 465 (758)
....+..-+.+.... .+.+ .+..+++++.+++. ....| .+|..+|..+.
T Consensus 425 ~~~~~kvv~~i~~~g-~g~~-~i~~~p~~~~l~v~--~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 425 PDNAWKILDSFPALG-GGSL-FIKTHPNSQYLYVD--ATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTTBTSEEEEEECSC-SCCC-CEECCTTCSEEEEE--CTTCSSHHHHTCEEEEEGGGC
T ss_pred ccccCEEEEEEecCC-CCCE-EEEeCCCCCeEEEe--cCCCCCcccCceEEEEECCcc
Confidence 110111112233221 1111 12346788877653 33444 37888887655
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00026 Score=74.39 Aligned_cols=249 Identities=8% Similarity=0.040 Sum_probs=135.9
Q ss_pred EEeeEEECCC---CCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-c-----cCcceeEEEecC----CeEEEEEeCCC
Q 004368 192 SVGCFQVSPD---NKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-L-----VGVTASVEWAGN----EALVYITMDEI 257 (758)
Q Consensus 192 ~i~~~~~SPD---G~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~-----~~~~~~~~wspD----g~l~y~~~~~~ 257 (758)
.+..++|||+ |..+.++....| .|.+||+.+++.... . . ......++|+|| |.++++...+.
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~----~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSN----RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETT----EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred ceEEEEEecccCCCCceEEEECCCC----EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 4778899985 665555554334 599999987765431 1 1 123566899999 54556655332
Q ss_pred CCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcC-CCcEEEEEecCCcceEEEEEeCCCCCceEEe---ecccccee
Q 004368 258 LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVL---TPRVVGVD 333 (758)
Q Consensus 258 ~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~-Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l---~~~~~~~~ 333 (758)
.|.++++.++ +....+... ......+.|+| |+++|+..+.+ ..|.++|+.+++....+ ......+.
T Consensus 96 ----~i~v~d~~~~--~~~~~~~~~-~~~i~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~ 165 (366)
T 3k26_A 96 ----IIRIINPITM--QCIKHYVGH-GNAINELKFHPRDPNLLLSVSKD---HALRLWNIQTDTLVAIFGGVEGHRDEVL 165 (366)
T ss_dssp ----EEEEECTTTC--CEEEEEESC-CSCEEEEEECSSCTTEEEEEETT---SCEEEEETTTTEEEEEECSTTSCSSCEE
T ss_pred ----EEEEEEchhc--eEeeeecCC-CCcEEEEEECCCCCCEEEEEeCC---CeEEEEEeecCeEEEEecccccccCcee
Confidence 5888888765 333344432 23344788999 88887765543 34788898876522233 12223333
Q ss_pred -eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceee--------------------------ecCCCCceeeeEEEe
Q 004368 334 -TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVL--------------------------IPHRESVKLQDIQLF 386 (758)
Q Consensus 334 -~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l--------------------------~~~~~~~~~~~~~~~ 386 (758)
..|+|+|+.|+..+.. ..|..+++.+......+ ........+..+.+.
T Consensus 166 ~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (366)
T 3k26_A 166 SADYDLLGEKIMSCGMD-----HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL 240 (366)
T ss_dssp EEEECTTSSEEEEEETT-----SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred EEEECCCCCEEEEecCC-----CCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence 2489999977766543 34666776542110000 000122345567777
Q ss_pred CCEEEEEEEeCCeeEEEEEEcCCCCCccccccCC----c-eeeccCcccccCCCCcccC--CcEEEEEEecCCCCCEEEE
Q 004368 387 IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGG----K-SVEFIDPVYSIDPSESVFS--SRILRFHYSSLRTPPSVYD 459 (758)
Q Consensus 387 ~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~----~-~i~~p~~~~~i~~~~~~~d--~~~l~~~~sS~~~P~~i~~ 459 (758)
++.+ ++...++. +.+|++.........+... . ...+......+....++++ +..++.. + .-..++.
T Consensus 241 ~~~l-~~~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~-~---~dg~i~v 313 (366)
T 3k26_A 241 GDLI-LSKSCENA--IVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG-N---QVGKLYV 313 (366)
T ss_dssp TTEE-EEECSSSE--EEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE-C---TTSCEEE
T ss_pred CCEE-EEEecCCE--EEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE-e---cCCcEEE
Confidence 6644 45555554 7788886422211111100 0 1112222223444566666 6655433 2 2346888
Q ss_pred EECCCCc
Q 004368 460 YDMDMGI 466 (758)
Q Consensus 460 ~d~~~~~ 466 (758)
||+.+++
T Consensus 314 wd~~~~~ 320 (366)
T 3k26_A 314 WDLEVED 320 (366)
T ss_dssp EECCSSS
T ss_pred EECCCCC
Confidence 8887764
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00016 Score=75.34 Aligned_cols=191 Identities=9% Similarity=0.084 Sum_probs=105.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+....|||||++|+-... ..+|++||+.+++.... . -......++|+|++.++++...+. .+.++++.
T Consensus 67 ~v~~~~~s~dg~~l~s~s~-----D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~----~i~vwd~~ 137 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASW-----DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK----TIKVWTIK 137 (319)
T ss_dssp CEEEEEECTTSSEEEEEET-----TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTS----CEEEEETT
T ss_pred cEEEEEECCCCCEEEEEeC-----CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEECC
Confidence 4667899999999875543 24799999999987652 1 122356689999995555554332 36666775
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCC------cEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCE
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESK------KFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNH 342 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg------~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~ 342 (758)
.. ....+.. .......+.++|++ ..|+. .... ..|.++|+.+......+......+.. .|+|+|+.
T Consensus 138 ~~---~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~l~s-~~~d--~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 138 GQ---CLATLLG-HNDWVSQVRVVPNEKADDDSVTIIS-AGND--KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210 (319)
T ss_dssp SC---EEEEECC-CSSCEEEEEECCC------CCEEEE-EETT--SCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSE
T ss_pred CC---eEEEEec-cCCcEEEEEEccCCCCCCCccEEEE-EeCC--CEEEEEECCcchhheeecCCCCcEEEEEEcCCCCE
Confidence 32 2222222 22233456677754 34443 3322 34667788765422233333333333 48999997
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 343 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
|+..+.+ ..|...|+.+. .....+.... .+..+.+..+...+....+. .+.+++++
T Consensus 211 l~s~~~d-----g~i~iwd~~~~-~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~--~i~v~~~~ 266 (319)
T 3frx_A 211 IASAGKD-----GEIMLWNLAAK-KAMYTLSAQD--EVFSLAFSPNRYWLAAATAT--GIKVFSLD 266 (319)
T ss_dssp EEEEETT-----CEEEEEETTTT-EEEEEEECCS--CEEEEEECSSSSEEEEEETT--EEEEEEET
T ss_pred EEEEeCC-----CeEEEEECCCC-cEEEEecCCC--cEEEEEEcCCCCEEEEEcCC--CcEEEEeC
Confidence 7655443 46777888652 2222233322 34455555443222333333 26677776
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.26 E-value=4.2e-06 Score=74.95 Aligned_cols=83 Identities=12% Similarity=0.040 Sum_probs=57.4
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++| +.... |... +.++|.|+.+|+||.|...... . . ++++.+.+..+++. .+.+
T Consensus 22 ~~~vv~~H-~~~~~----~~~~----l~~~~~v~~~d~~G~G~s~~~~--------~-~-~~~~~~~~~~~~~~--~~~~ 80 (131)
T 2dst_A 22 GPPVLLVA-EEASR----WPEA----LPEGYAFYLLDLPGYGRTEGPR--------M-A-PEELAHFVAGFAVM--MNLG 80 (131)
T ss_dssp SSEEEEES-SSGGG----CCSC----CCTTSEEEEECCTTSTTCCCCC--------C-C-HHHHHHHHHHHHHH--TTCC
T ss_pred CCeEEEEc-CCHHH----HHHH----HhCCcEEEEECCCCCCCCCCCC--------C-C-HHHHHHHHHHHHHH--cCCC
Confidence 57899999 22222 2222 4456999999999988654210 1 1 56666655555443 2346
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCc
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDL 619 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~ 619 (758)
++.++|+|+||.++..++.++|.+
T Consensus 81 ~~~lvG~S~Gg~~a~~~a~~~p~l 104 (131)
T 2dst_A 81 APWVLLRGLGLALGPHLEALGLRA 104 (131)
T ss_dssp SCEEEECGGGGGGHHHHHHTTCCE
T ss_pred ccEEEEEChHHHHHHHHHhcCCcE
Confidence 899999999999999999999863
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00074 Score=69.39 Aligned_cols=197 Identities=13% Similarity=0.108 Sum_probs=106.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc---CcceeEEEecC--CeEEEEEeCCCCCCceEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV---GVTASVEWAGN--EALVYITMDEILRPDKAWL 265 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~---~~~~~~~wspD--g~l~y~~~~~~~~~~~v~~ 265 (758)
.+..++|||||++||-... + .+|+|||+.++..... ++. +....++|+|+ |.++++...+. .|.+
T Consensus 11 ~V~~~~~s~~g~~las~s~-D----~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~----~v~i 81 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSS-D----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG----KVMI 81 (297)
T ss_dssp CEEEEEECTTSSEEEEEET-T----SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT----EEEE
T ss_pred ceEEEEECCCCCEEEEEeC-C----CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC----EEEE
Confidence 3667899999999986553 2 3699999976432111 232 23566899874 65555654332 4777
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCC--CcEEEEEecCCcceEEEEEeCCCCC--ceEEeeccccceee-EEeec-
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASES--KKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVGVDT-AASHR- 339 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~D--g~~l~~~s~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~~-~~s~d- 339 (758)
+++.++.......+... ......+.|+|+ |++|+..+.+ ..|.++|+.++. ....+......+.. .|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g~~l~s~s~d---~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPMLLVASSD---GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEBSSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEETT---SEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred EEcCCCceEEEEEeecC-CCceeEEEeCcCCCCcEEEEEECC---CcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence 78876532222333322 223446889998 7777654433 346666776542 12333333333332 37776
Q ss_pred ------------CCEEEEEEcCCCCCCcEEEEEeCCCCCcc---eeeecCCCCceeeeEEEeCC----EEEEEEEeCCee
Q 004368 340 ------------GNHFFITRRSDELFNSELLACPVDNTSET---TVLIPHRESVKLQDIQLFID----HLAVYEREGGLQ 400 (758)
Q Consensus 340 ------------g~~l~~~s~~~~~~~~~L~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 400 (758)
++.|+..+.++ ..+|+ |+...... ...+.. ....+..+.+..+ .+++....++.
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~---~v~lw--d~~~~~~~~~~~~~l~~-H~~~V~~v~~sp~~~~~~~las~s~D~~- 230 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADN---LVKIW--KYNSDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRSYMASVSQDRT- 230 (297)
T ss_dssp ------------CCEEEEEETTS---CEEEE--EEETTTTEEEEEEEECC-CSSCEEEEEECCCCSSSEEEEEEETTSC-
T ss_pred ccccccCCCCCCcceEEEEcCCC---cEEEE--EEcCCCceEEEEEEecC-CCCceEEEEECCCCCCceEEEEEECCCc-
Confidence 34444433322 34444 44332111 111221 2224566666654 56667777775
Q ss_pred EEEEEEcCC
Q 004368 401 KITTYRLPA 409 (758)
Q Consensus 401 ~l~v~~l~~ 409 (758)
+++|+++.
T Consensus 231 -v~iWd~~~ 238 (297)
T 2pm7_B 231 -CIIWTQDN 238 (297)
T ss_dssp -EEEEEESS
T ss_pred -EEEEEeCC
Confidence 66888764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-05 Score=85.44 Aligned_cols=195 Identities=9% Similarity=0.015 Sum_probs=103.0
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCc--eeecccc---CcceeEEEecCC-eEEEEEeCCCCCCceEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT--PVGKPLV---GVTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~--~~~~~~~---~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~ 266 (758)
+..+.|||||++||.... ...|+|||+.++. ... .+. +....++|+||| .|+....+. .|.++
T Consensus 14 v~~~~~s~~g~~l~~~~~-----d~~i~iw~~~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s~d~-----~v~vw 82 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTA-----TNQVELYEQDGNGWKHAR-TFSDHDKIVTCVDWAPKSNRIVTCSQDR-----NAYVY 82 (377)
T ss_dssp CSCCEECSSSSEEECCCS-----SSCBCEEEEETTEEEECC-CBCCCSSCEEEEEECTTTCCEEEEETTS-----SEEEC
T ss_pred EEEEEECCCCCEEEEecC-----CCEEEEEEccCCceEEEE-EEecCCceEEEEEEeCCCCEEEEEeCCC-----eEEEE
Confidence 567799999999985432 3468999998884 332 232 235668999999 454444332 37777
Q ss_pred EcCCCC-CCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCc---eEEeec-cccceee-EEeecC
Q 004368 267 KLEADQ-SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE---LRVLTP-RVVGVDT-AASHRG 340 (758)
Q Consensus 267 ~l~~~~-~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~---~~~l~~-~~~~~~~-~~s~dg 340 (758)
++.++. ......+... ......+.|+|||++|+..+.+ ..|.++|+.+++. .+.+.. ....+.. .|+|+|
T Consensus 83 d~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 158 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRL-NRAATFVRWSPNEDKFAVGSGA---RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN 158 (377)
T ss_dssp ------CCCCEEECCCC-SSCEEEEECCTTSSCCEEEESS---SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS
T ss_pred EcCCCCceeeeeEeccc-CCceEEEEECCCCCEEEEEecC---CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC
Confidence 776653 1123333332 2234478899999988776543 2466777766541 344443 3333333 489999
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCCCCC---------------cceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEE
Q 004368 341 NHFFITRRSDELFNSELLACPVDNTS---------------ETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITT 404 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v 404 (758)
+.|+..+.++ .|..+++.... ....+..-.....+..+.+..+ .++++...++. +++
T Consensus 159 ~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~--i~i 231 (377)
T 3dwl_C 159 VLLAAGCADR-----KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSS--VTI 231 (377)
T ss_dssp SEEEEEESSS-----CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTE--EC-
T ss_pred CEEEEEeCCC-----EEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCc--EEE
Confidence 9777665543 34444442110 0111111122233556666543 23445555664 778
Q ss_pred EEcCC
Q 004368 405 YRLPA 409 (758)
Q Consensus 405 ~~l~~ 409 (758)
|++..
T Consensus 232 wd~~~ 236 (377)
T 3dwl_C 232 AYPSA 236 (377)
T ss_dssp CEECS
T ss_pred EECCC
Confidence 88874
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=7e-05 Score=81.90 Aligned_cols=194 Identities=13% Similarity=0.136 Sum_probs=110.6
Q ss_pred EeeEEECC-CCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc---CcceeEEEecC-CeEEEEEeCCCCCCceEEEE
Q 004368 193 VGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV---GVTASVEWAGN-EALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 193 i~~~~~SP-DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~---~~~~~~~wspD-g~l~y~~~~~~~~~~~v~~~ 266 (758)
+..++|+| ++++||.+.. +| +|+|||+.+++.... ... +.+..++|+|. +.++++...+. .|.++
T Consensus 122 V~~l~~~P~~~~~lasGs~-dg----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~----~v~iw 192 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSK-GG----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG----TTRLQ 192 (435)
T ss_dssp EEEEEECSSCTTCEEEEET-TS----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS----CEEEE
T ss_pred EEEEEEeCCCCCEEEEEeC-CC----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC----EEEEe
Confidence 67889999 5667775543 34 599999988765432 222 23667999984 55556654332 37777
Q ss_pred EcCCCCCCcEEEeeec--CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEE
Q 004368 267 KLEADQSNDICLYHEK--DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHF 343 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~--~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l 343 (758)
++.+. ....+... .......+.+++||++|+..+.+ ..|+++|+.+.. ...+......+.. .|+|+++.+
T Consensus 193 d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~i~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 193 DFKGN---ILRVFASSDTINIWFCSLDVSASSRMVVTGDNV---GNVILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp ETTSC---EEEEEECCSSCSCCCCCEEEETTTTEEEEECSS---SBEEEEESSSCB-CCCSBCCSSCEEEEEECTTCSSE
T ss_pred eccCC---ceeEEeccCCCCccEEEEEECCCCCEEEEEeCC---CcEeeeccCcce-eEEEecccceEEeeeecCCCceE
Confidence 88654 22222222 12234467899999988765433 347778887654 4444433333433 488998876
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCccee-eecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCC
Q 004368 344 FITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
++....+ ..|..+|+........ +........+..+.+. +..| ++...++. +++|++..
T Consensus 266 ~~s~s~d----~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l-~s~~~D~~--i~iwd~~~ 327 (435)
T 4e54_B 266 LATASVD----QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARL-LTTDQKSE--IRVYSASQ 327 (435)
T ss_dssp EEEEETT----SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEE-EEEESSSC--EEEEESSS
T ss_pred EEEecCc----ceeeEEecccccccceEEEeeeccccccceeECCCCCee-EEEcCCCE--EEEEECCC
Confidence 6665544 2355556654222211 1111112234444444 4444 45555664 77888874
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00029 Score=76.45 Aligned_cols=241 Identities=8% Similarity=0.012 Sum_probs=128.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
.+..++|||||++||.+.. + ..|.|||+.+++.+.........-..+++|+.++.+...+ ..++.++....
T Consensus 149 ~V~sv~fspdg~~lasgs~-D----g~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d----~~i~~~d~~~~ 219 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTS-S----AEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRS----GHIHHHDVRVA 219 (420)
T ss_dssp CEEEEEECTTSSEEEEEET-T----SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETT----SEEEEEETTSS
T ss_pred cEEEEEECCCCCEEEEEEC-C----CeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCC----CceeEeeeccc
Confidence 4788999999999987654 2 3599999999987653211111112344566454554432 24677777655
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC----ceEEeecccccee-eEEeecCCEEEEE
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE----ELRVLTPRVVGVD-TAASHRGNHFFIT 346 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~----~~~~l~~~~~~~~-~~~s~dg~~l~~~ 346 (758)
.. ....+.. .......+.++++|++++....+ ..+.+++..+++ ...........+. ..|+|++..++..
T Consensus 220 ~~-~~~~~~~-h~~~~~~~~~~~~g~~l~s~~~D---~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~ 294 (420)
T 4gga_A 220 EH-HVATLSG-HSQEVCGLRWAPDGRHLASGGND---NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 294 (420)
T ss_dssp SC-EEEEEEC-CSSCEEEEEECTTSSEEEEEETT---SCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEE
T ss_pred ce-eeEEecc-cccceeeeeecCCCCeeeeeecc---ccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEE
Confidence 32 2333333 23334467899999998765543 235666766544 1222222223333 2378877766655
Q ss_pred EcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEE-eCCeeEEEEEEcCCCCCccccccCCceeec
Q 004368 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYER-EGGLQKITTYRLPAVGEPLKSLQGGKSVEF 425 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~ 425 (758)
.... ....|..+|+.+. .....+.......-..+...++.++.... .++ .|.+|++.. +..+ ..+
T Consensus 295 ~~gs--~D~~I~iwd~~t~-~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~--~I~iwd~~~-~~~v--------~~l 360 (420)
T 4gga_A 295 GGGT--SDRHIRIWNVCSG-ACLSAVDAHSQVCSILWSPHYKELISGHGFAQN--QLVIWKYPT-MAKV--------AEL 360 (420)
T ss_dssp EECT--TTCEEEEEETTTT-EEEEEEECSSCEEEEEEETTTTEEEEEECTTTC--CEEEEETTT-CCEE--------EEE
T ss_pred Eeec--CCCEEEEEeCCcc-ccceeeccccceeeeeecCCCCeEEEEEecCCC--EEEEEECCC-CcEE--------EEE
Confidence 3321 2356777888763 22222333222222233344556654432 333 488998874 3322 223
Q ss_pred cCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCC
Q 004368 426 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDM 464 (758)
Q Consensus 426 p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~ 464 (758)
..+...|..+.+++++..| ++.+. . ..|..+|+..
T Consensus 361 ~gH~~~V~~l~~spdg~~l-~S~s~-D--~tvriWdv~~ 395 (420)
T 4gga_A 361 KGHTSRVLSLTMSPDGATV-ASAAA-D--ETLRLWRCFE 395 (420)
T ss_dssp CCCSSCEEEEEECTTSSCE-EEEET-T--TEEEEECCSC
T ss_pred cCCCCCEEEEEEcCCCCEE-EEEec-C--CeEEEEECCC
Confidence 3333334445566777655 33332 2 3566666543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00012 Score=77.33 Aligned_cols=196 Identities=13% Similarity=0.042 Sum_probs=109.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c---ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P---LVGVTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~---~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~ 267 (758)
.+..+.|+|||++|+.... +| .|++||+.+++.... . .......+.|+||+.++++...+. .+.+++
T Consensus 54 ~v~~~~~~~~~~~l~~~~~-dg----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~v~i~d 124 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGT-DR----NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR----VISICY 124 (372)
T ss_dssp CEEEEEEETTTTEEEEEET-TS----CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS----SEEEEE
T ss_pred cccEEEEeCCCCEEEEEcC-CC----eEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCC----EEEEEE
Confidence 4678899999999987653 33 589999988874432 1 223356689999994444443321 366666
Q ss_pred cCCCCCCc-EEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCC------------------CCCceEEeecc
Q 004368 268 LEADQSND-ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS------------------KPEELRVLTPR 328 (758)
Q Consensus 268 l~~~~~~~-~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~------------------~~~~~~~l~~~ 328 (758)
+.+..... ...+..........+.|+||+++|+..+.+ ..|+++|+. .+.....+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
T 1k8k_C 125 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD---FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS 201 (372)
T ss_dssp EETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT---SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred ecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC---CCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence 65542211 112212223334578899999988765443 346666743 22222333322
Q ss_pred cccee-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEc
Q 004368 329 VVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 329 ~~~~~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l 407 (758)
...+. ..|+|+|+.|+..+.. ..|..+|+.+......+..+.. .+..+.+..+..++....++. +.+|++
T Consensus 202 ~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~d~~--i~i~~~ 272 (372)
T 1k8k_C 202 CGWVHGVCFSANGSRVAWVSHD-----STVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAGHDCF--PVLFTY 272 (372)
T ss_dssp SSCEEEEEECSSSSEEEEEETT-----TEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEETTSS--CEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCceeEEEccCCC--CeEEEEEecCCCEEEEEeCCe--EEEEEc
Confidence 22233 3489999977766543 4577778765322222333322 345555554322333335554 567777
Q ss_pred C
Q 004368 408 P 408 (758)
Q Consensus 408 ~ 408 (758)
.
T Consensus 273 ~ 273 (372)
T 1k8k_C 273 D 273 (372)
T ss_dssp E
T ss_pred c
Confidence 6
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00019 Score=76.89 Aligned_cols=241 Identities=16% Similarity=0.080 Sum_probs=128.3
Q ss_pred EEeeEEECC-CCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC---eEEEEEeCCCCCCceEEEE
Q 004368 192 SVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE---ALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 192 ~i~~~~~SP-DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg---~l~y~~~~~~~~~~~v~~~ 266 (758)
.+..+.|+| ++++|+... .+| .|++||+.+++.... ........+.|+|++ .++++...+. .|.++
T Consensus 101 ~v~~~~~~~~~~~~l~s~~-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~ 171 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSS-FDK----TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP----KVQLC 171 (408)
T ss_dssp CEEEEEECTTCTTCEEEEE-TTS----EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS----SEEEE
T ss_pred cEEEEEEccCCCcEEEEEe-CCC----eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC----eEEEE
Confidence 577889999 666666443 333 699999999887653 334445668898865 3555554332 48888
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEe---------------ecccc
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVL---------------TPRVV 330 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l---------------~~~~~ 330 (758)
++.++. ....+.... .....+.|+|++++++++....+ .|.++|+.++. ....+ .....
T Consensus 172 d~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~ll~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 172 DLKSGS--CSHILQGHR-QEILAVSWSPRYDYILATASADS--RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG 246 (408)
T ss_dssp ESSSSC--CCEEECCCC-SCEEEEEECSSCTTEEEEEETTS--CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred eCCCcc--eeeeecCCC-CcEEEEEECCCCCcEEEEEcCCC--cEEEEECCCCCcccccccccccccceeeccccccccC
Confidence 887663 333443322 23446889999997665554433 36677776543 22222 11112
Q ss_pred cee-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeec----CCCCceeeeEEEeCCEEEEEEEeCCeeEEEEE
Q 004368 331 GVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIP----HRESVKLQDIQLFIDHLAVYEREGGLQKITTY 405 (758)
Q Consensus 331 ~~~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~ 405 (758)
.+. ..|+|+|+.|+..+.. ..|..+++.+......... .........+.......++....++ .+.+|
T Consensus 247 ~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~v~ 319 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLTVGTD-----NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS--TIAVY 319 (408)
T ss_dssp CEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT--EEEEE
T ss_pred ceeEEEEcCCCCEEEEecCC-----CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC--EEEEE
Confidence 222 2489999988766543 3477777765322111110 0000001111112222333444555 47788
Q ss_pred EcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 406 RLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 406 ~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
++.. +..+ ..+..+...+....+++++..++ +.+. -..+..+|+.+++
T Consensus 320 d~~~-~~~~--------~~~~~~~~~v~~~~~s~~~~~l~-s~~~---dg~i~iw~~~~~~ 367 (408)
T 4a11_B 320 TVYS-GEQI--------TMLKGHYKTVDCCVFQSNFQELY-SGSR---DCNILAWVPSLYE 367 (408)
T ss_dssp ETTT-CCEE--------EEECCCSSCEEEEEEETTTTEEE-EEET---TSCEEEEEECC--
T ss_pred ECcC-Ccce--------eeeccCCCeEEEEEEcCCCCEEE-EECC---CCeEEEEeCCCCC
Confidence 8874 3322 12222222333455666776553 3322 2467788877765
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00072 Score=70.31 Aligned_cols=194 Identities=10% Similarity=0.073 Sum_probs=105.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCcee---ec-ccc---CcceeEEEecCCeEEEEEeCCCCCCceEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV---GK-PLV---GVTASVEWAGNEALVYITMDEILRPDKAW 264 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~---~~-~~~---~~~~~~~wspDg~l~y~~~~~~~~~~~v~ 264 (758)
.+..+.|||++..+.++...+| +|++||+.+.... .. .+. .....++|+|||.++++...+ ..|.
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~----~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D----~~v~ 90 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDK----TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD----KTLR 90 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTS----EEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT----SEEE
T ss_pred eEEEEEccCCCccEEEEecCCc----cEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC----CEEE
Confidence 4667899998743334444444 6888888653211 11 222 235668999999555555433 2478
Q ss_pred EEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeec----
Q 004368 265 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHR---- 339 (758)
Q Consensus 265 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~d---- 339 (758)
++++.++ +....+.... .....+.++|++++|+..+.+. .|.++|+.+.. ...+......+.. .+.|.
T Consensus 91 ~wd~~~~--~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~D~---~i~vwd~~~~~-~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 91 LWDVATG--ETYQRFVGHK-SDVMSVDIDKKASMIISGSRDK---TIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp EEETTTT--EEEEEEECCS-SCEEEEEECTTSCEEEEEETTS---CEEEEETTSCE-EEEECCCSSCEEEEEECCC----
T ss_pred EEECCCC--CeeEEEccCC-CcEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCe-EEEEeccCCcEEEEEEccCCCCC
Confidence 8888776 3333343332 2344788999999877554432 35566776543 4444433333322 25553
Q ss_pred --CCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 340 --GNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 340 --g~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+..++..+. + ..|...|+........+..+.. .+..+.+..+ .+++....++. +++|++..
T Consensus 164 ~~~~~l~s~~~-d----~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~sp~g~~l~s~~~dg~--i~iwd~~~ 227 (319)
T 3frx_A 164 DDSVTIISAGN-D----KMVKAWNLNQFQIEADFIGHNS--NINTLTASPDGTLIASAGKDGE--IMLWNLAA 227 (319)
T ss_dssp --CCEEEEEET-T----SCEEEEETTTTEEEEEECCCCS--CEEEEEECTTSSEEEEEETTCE--EEEEETTT
T ss_pred CCccEEEEEeC-C----CEEEEEECCcchhheeecCCCC--cEEEEEEcCCCCEEEEEeCCCe--EEEEECCC
Confidence 333443333 2 3566777765222222333333 3455666543 34445556664 77888873
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0011 Score=70.70 Aligned_cols=196 Identities=10% Similarity=0.114 Sum_probs=112.6
Q ss_pred EEeeEEECC-CCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c--------------ccCcceeEEEecCC-eEEEEEe
Q 004368 192 SVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P--------------LVGVTASVEWAGNE-ALVYITM 254 (758)
Q Consensus 192 ~i~~~~~SP-DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~--------------~~~~~~~~~wspDg-~l~y~~~ 254 (758)
.+..+.||| ||++||.... +| .|++||+.+++.... . .......++|+|++ .++++..
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGS-DG----VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CEEEEEECTTTCCEEEEEET-TS----CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred cEEEEEEecCCCCEEEEEcC-CC----eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 467789999 9999987654 23 599999998765432 1 12235678999954 5555554
Q ss_pred CCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcC---CCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc
Q 004368 255 DEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASE---SKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG 331 (758)
Q Consensus 255 ~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~---Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 331 (758)
.+ ..|.++++.++ +....+.... ....+.+++ ++.+++....+ ..|+++|+.+++....+......
T Consensus 120 ~d----~~i~iwd~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~d~~~~~~~~~~~~~~~~ 188 (408)
T 4a11_B 120 FD----KTLKVWDTNTL--QTADVFNFEE--TVYSHHMSPVSTKHCLVAVGTRG---PKVQLCDLKSGSCSHILQGHRQE 188 (408)
T ss_dssp TT----SEEEEEETTTT--EEEEEEECSS--CEEEEEECSSCSSCCEEEEEESS---SSEEEEESSSSCCCEEECCCCSC
T ss_pred CC----CeEEEeeCCCC--ccceeccCCC--ceeeeEeecCCCCCcEEEEEcCC---CeEEEEeCCCcceeeeecCCCCc
Confidence 32 25888888766 2333333222 223456666 44466654433 34778888776534444433333
Q ss_pred ee-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeee--------------cCCCCceeeeEEEeCCE-EEEEEE
Q 004368 332 VD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLI--------------PHRESVKLQDIQLFIDH-LAVYER 395 (758)
Q Consensus 332 ~~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~--------------~~~~~~~~~~~~~~~~~-l~~~~~ 395 (758)
+. ..|+|+++++++....+ ..|..+|+.........+ .......+..+.+..+. .+++..
T Consensus 189 v~~~~~~~~~~~ll~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASAD----SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp EEEEEECSSCTTEEEEEETT----SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEECCCCCcEEEEEcCC----CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 33 34899999765555544 346667765422111111 01122345566666542 334455
Q ss_pred eCCeeEEEEEEcCC
Q 004368 396 EGGLQKITTYRLPA 409 (758)
Q Consensus 396 ~~g~~~l~v~~l~~ 409 (758)
.++. +.+|++..
T Consensus 265 ~dg~--i~vwd~~~ 276 (408)
T 4a11_B 265 TDNR--MRLWNSSN 276 (408)
T ss_dssp TTSC--EEEEETTT
T ss_pred CCCe--EEEEECCC
Confidence 5654 77899874
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0004 Score=71.46 Aligned_cols=253 Identities=13% Similarity=0.076 Sum_probs=129.4
Q ss_pred CceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccC---cceeEEEecCCeE
Q 004368 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG---VTASVEWAGNEAL 249 (758)
Q Consensus 174 ~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~---~~~~~~wspDg~l 249 (758)
+++ +||...+.. .|+ +.-+.|||++ .||.+.| .+|+|||+++|+.... ...+ .+..++|+|||.+
T Consensus 13 p~r-vldap~~~~--d~y-~~~l~WS~~~-~lAvg~D------~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~ 81 (318)
T 4ggc_A 13 PDR-ILDAPEIRN--DYY-LNLVDWSSGN-VLAVALD------NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY 81 (318)
T ss_dssp CSE-EEECTTCCC--CTT-CBCEEECTTS-EEEEEET------TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSE
T ss_pred CCE-EeeCCCCcc--ccc-ceEEEECCCC-EEEEEeC------CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCE
Confidence 444 458655532 221 3457899997 7887663 2699999999987653 3222 2567999999955
Q ss_pred EEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeecc
Q 004368 250 VYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPR 328 (758)
Q Consensus 250 ~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~ 328 (758)
+.+...+. .|.++++.++ +....+...... . ..++++++.++..+.. ..+...+..... ....+...
T Consensus 82 l~sgs~Dg----~v~iw~~~~~--~~~~~~~~h~~~-~--~~~~~~~~~l~s~~~~---~~~~~~~~~~~~~~~~~~~~~ 149 (318)
T 4ggc_A 82 LAVGTSSA----EVQLWDVQQQ--KRLRNMTSHSAR-V--GSLSWNSYILSSGSRS---GHIHHHDVRVAEHHVATLSGH 149 (318)
T ss_dssp EEEEETTS----EEEEEETTTT--EEEEEEECCSSC-E--EEEEEETTEEEEEETT---SEEEEEETTSSSCEEEEEECC
T ss_pred EEEEECCC----cEEEeecCCc--eeEEEecCccce-E--EEeecCCCEEEEEecC---CceEeeecCCCceeEEEEcCc
Confidence 55554332 4778888776 233333332222 2 2356677766544332 223444554443 23333333
Q ss_pred ccceee-EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcce-e-eecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEE
Q 004368 329 VVGVDT-AASHRGNHFFITRRSDELFNSELLACPVDNTSETT-V-LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKIT 403 (758)
Q Consensus 329 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~-~-l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~ 403 (758)
...... .++++|+.++..+.+ ..|...|+.+..... . .........+..+.+. +..++..........+.
T Consensus 150 ~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 150 SQEVCGLRWAPDGRHLASGGND-----NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp SSCEEEEEECTTSSEEEEEETT-----SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred cCceEEEEEcCCCCEEEEEecC-----cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 333332 378888876654443 346666765422111 1 1111112223344433 34454444444444577
Q ss_pred EEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 404 TYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 404 v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
+++.... ... ..... ...+....+.++++.+++... ..-..++.+|+.+++
T Consensus 225 lwd~~~~-~~~------~~~~~---~~~v~~~~~~~~~~~~~~~sg--~~d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 225 IWNVCSG-ACL------SAVDA---HSQVCSILWSPHYKELISGHG--FAQNQLVIWKYPTMA 275 (318)
T ss_dssp EEETTTC-CEE------EEEEC---SSCEEEEEEETTTTEEEEEEC--TTTCCEEEEETTTCC
T ss_pred EEecccc-ccc------ccccc---eeeeeeeeecccccceEEEEE--cCCCEEEEEECCCCc
Confidence 8887632 110 11111 111222334455666544332 233568889988877
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00021 Score=89.18 Aligned_cols=241 Identities=13% Similarity=0.093 Sum_probs=131.8
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++||.... +| .|.|||+.+++.... . -.+....++|+|||.++.+...+ ..|.++++.
T Consensus 617 ~v~~~~~s~~~~~l~s~~~-d~----~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----~~v~vwd~~ 687 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGA-DK----TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSAD----KKVKIWDSA 687 (1249)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETT
T ss_pred cEEEEEECCCCCEEEEEeC-CC----eEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCC----CeEEEEECC
Confidence 4678899999999986643 23 699999999987653 2 12335669999999544454432 258888988
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEEc
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRR 348 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~ 348 (758)
++ +....+.... .....+.|+|++...++.+.+. ...|.++|+.++.....+......+.. .|+|+|+.++..+.
T Consensus 688 ~~--~~~~~~~~~~-~~v~~~~~~~~~~~~~l~sg~~-d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 688 TG--KLVHTYDEHS-EQVNCCHFTNKSNHLLLATGSN-DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp TC--CEEEEEECCS-SCEEEEEECSSSSCCEEEEEET-TSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred CC--ceEEEEcCCC-CcEEEEEEecCCCceEEEEEeC-CCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 76 3344444333 2344678999755433333221 234777888877623334333333433 48999997776655
Q ss_pred CCCCCCcEEEEEeCCCCCcceeeec-----------CCCCceeee--EEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccc
Q 004368 349 SDELFNSELLACPVDNTSETTVLIP-----------HRESVKLQD--IQLFIDHLAVYEREGGLQKITTYRLPAVGEPLK 415 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l~~-----------~~~~~~~~~--~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~ 415 (758)
+ +.|..+++.+......+.. ......+.. ++++++.+++.. ++ .+.+|++.. +...
T Consensus 764 d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~--~v~~~d~~~-~~~~- 832 (1249)
T 3sfz_A 764 D-----GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--KN--KVLLFDIHT-SGLL- 832 (1249)
T ss_dssp S-----SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE--TT--EEEEEETTT-CCEE-
T ss_pred C-----CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc--CC--cEEEEEecC-CCce-
Confidence 4 3466666654211111110 000112223 333445555433 33 477888874 2211
Q ss_pred cccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 416 SLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 416 ~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
..+. ......+....++++++.+..... -..+..+|+.++.
T Consensus 833 -----~~~~-~~~~~~v~~~~~sp~~~~l~~~~~----dg~v~vwd~~~~~ 873 (1249)
T 3sfz_A 833 -----AEIH-TGHHSTIQYCDFSPYDHLAVIALS----QYCVELWNIDSRL 873 (1249)
T ss_dssp -----EEEE-CSSSSCCCEEEECSSTTEEEEECS----SSCEEEEETTTTE
T ss_pred -----eEEc-CCCCCceEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCc
Confidence 1111 111123334455666666544322 2357778877765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00019 Score=76.68 Aligned_cols=205 Identities=13% Similarity=0.012 Sum_probs=105.9
Q ss_pred eEEECCCCCEEEEEEeC-----CCCeEEEEEEEECCCCceeec-ccc--------CcceeEEEecCCeEEEEEeCCCCCC
Q 004368 195 CFQVSPDNKLVAYAEDT-----KGDEIYTVYVIDIETGTPVGK-PLV--------GVTASVEWAGNEALVYITMDEILRP 260 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~-----~G~e~~~l~v~dl~~g~~~~~-~~~--------~~~~~~~wspDg~l~y~~~~~~~~~ 260 (758)
.+.+||||++|.++... .|.....|.++|+++.+.... .+. .....++|||||+.+|+..... .
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~--~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA--G 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC--C
Confidence 78999999998777532 122234688999998877642 222 1134589999995445543211 2
Q ss_pred ceEEEEEcCCCCCCcEEEeeec-------C-CceeeEEEEcCCCcEEEEEecCC--------------------------
Q 004368 261 DKAWLHKLEADQSNDICLYHEK-------D-DIYSLGLQASESKKFLFIASESK-------------------------- 306 (758)
Q Consensus 261 ~~v~~~~l~~~~~~~~~v~~~~-------~-~~~~~~~~~S~Dg~~l~~~s~~~-------------------------- 306 (758)
..|..++ .++..... +..-+ + ...+ +..++||+.+++.. ..
T Consensus 148 ~~v~viD-~t~~~~~~-~i~~~~~~~~~~~~~~~~--~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQ-LLSSPTCYHIHPGAPSTF--YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred CeEEEEE-CCCCEEeE-EcCCCceEEEEeCCCceE--EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence 3577777 65522111 01110 0 1111 23445655544432 10
Q ss_pred ---------cceEEEEEeCCCCCceEEeec-------------ccccee-eEEeecCCEEEEEEcCCC-----CCCcEEE
Q 004368 307 ---------ITRFVFYLDVSKPEELRVLTP-------------RVVGVD-TAASHRGNHFFITRRSDE-----LFNSELL 358 (758)
Q Consensus 307 ---------~~~~l~~~d~~~~~~~~~l~~-------------~~~~~~-~~~s~dg~~l~~~s~~~~-----~~~~~L~ 358 (758)
....++++|+.+.. .+.+.. ...+.. ..+++||+++|+..+... .....|.
T Consensus 223 ~~~~~~~~~~~~~v~vid~~~~~-~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~ 301 (373)
T 2mad_H 223 KSGRIVWPVYSGKILQADISAAG-ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT 301 (373)
T ss_pred cCCEEEEEcCCceEEEEeccCCc-ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence 11256777776543 221111 011112 347899999998765321 1235799
Q ss_pred EEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 359 ACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 359 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
++|+++......+ +-.....-..++.+++.+++..+. +...+.++++..
T Consensus 302 VID~~t~~vv~~i-~~g~~p~~i~~s~Dg~~~l~v~~~-~~~~V~ViD~~t 350 (373)
T 2mad_H 302 SVTGLVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSA-GTEVLHIYDAGA 350 (373)
T ss_pred EEECCCCEEEEEE-ECCCCcCeEEECCCCCeEEEEEcC-CCCeEEEEECCC
Confidence 9998763222223 322222222444555545555442 335688998873
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=9.3e-05 Score=82.09 Aligned_cols=184 Identities=13% Similarity=0.108 Sum_probs=103.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceee-ccccC------cceeEEEecCCeEEEEEeCCCCCCceEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVG------VTASVEWAGNEALVYITMDEILRPDKAW 264 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~-~~~~~------~~~~~~wspDg~l~y~~~~~~~~~~~v~ 264 (758)
.+..++|||||++||-+.. +| ++.|||.++ .+. .. .. ....++|||||+++++..+++ .|.
T Consensus 87 ~V~~vawSPdG~~LAs~s~-dg----~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG----tVk 154 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSN-NG----NVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG----ELQ 154 (588)
T ss_dssp CEEEEEECSSSSCEEEEET-TS----CEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTS----EEE
T ss_pred cEEEEEECCCCCEEEEEeC-CC----cEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCC----EEE
Confidence 4778999999999996654 33 488888644 221 12 12 255699999996556655432 477
Q ss_pred EEEcCCCCCCc-----EEEee---ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCc---eEEeec-cccce
Q 004368 265 LHKLEADQSND-----ICLYH---EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE---LRVLTP-RVVGV 332 (758)
Q Consensus 265 ~~~l~~~~~~~-----~~v~~---~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~---~~~l~~-~~~~~ 332 (758)
++++.++.... ...+. .....+..+++||||| |+..+. ...++++|++++.. .+.+.+ ....+
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~---D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS---NNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET---TCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC---CCeEEEEECCCCccccceeeecccccCcE
Confidence 78887652101 12221 2233466789999999 444333 24467778877651 123422 22222
Q ss_pred -eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcc-eeeecCCCCceeeeEEE--eCCE-EEEEEEeCCeeEEEE
Q 004368 333 -DTAASHRGNHFFITRRSDELFNSELLACPVDNTSET-TVLIPHRESVKLQDIQL--FIDH-LAVYEREGGLQKITT 404 (758)
Q Consensus 333 -~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~-~~l~~~~~~~~~~~~~~--~~~~-l~~~~~~~g~~~l~v 404 (758)
...|+ |+.|+... + ..|..+++.+. .. .....+ ...+.++.+ .++. .++.+.++|. +++.
T Consensus 230 ~svaFs--g~~LASa~--~----~tIkLWd~~~~-~~~~~~~gh--~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 230 TDLKIV--DYKVVLTC--P----GYVHKIDLKNY-SISSLKTGS--LENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp CCEEEE--TTEEEEEC--S----SEEEEEETTTT-EEEEEECSC--CSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EEEEEE--CCEEEEEe--C----CeEEEEECCCC-eEEEEEcCC--CceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 23376 66666543 2 36778887652 22 222233 334556777 6664 3444555666 5443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00042 Score=71.89 Aligned_cols=197 Identities=11% Similarity=0.118 Sum_probs=108.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCcee---eccc---cCcceeEEEec--CCeEEEEEeCCCCCCceE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV---GKPL---VGVTASVEWAG--NEALVYITMDEILRPDKA 263 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~---~~~~---~~~~~~~~wsp--Dg~l~y~~~~~~~~~~~v 263 (758)
.+..+.|||||++||.... + ..|++||+.++... ...+ ......++|+| |+.++++...+. .|
T Consensus 13 ~v~~~~~~~~~~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg----~v 83 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSS-D----QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK----TV 83 (351)
T ss_dssp CEEEEEECSSSSEEEEEET-T----SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS----CE
T ss_pred ceeEEEEcCCCCEEEEeeC-C----CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC----eE
Confidence 4778899999999986653 2 36999999876421 1122 22356689999 575555554322 37
Q ss_pred EEEEcCCCCCC-------cEEEeeecCCceeeEEEEcCC--CcEEEEEecCCcceEEEEEeCCCCCceEEee--------
Q 004368 264 WLHKLEADQSN-------DICLYHEKDDIYSLGLQASES--KKFLFIASESKITRFVFYLDVSKPEELRVLT-------- 326 (758)
Q Consensus 264 ~~~~l~~~~~~-------~~~v~~~~~~~~~~~~~~S~D--g~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~-------- 326 (758)
.++++.++... ....+.. .......+.|+|+ +++|+..+.+ ..|.++|+.+++....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLGND---GILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETT---CEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred EEEecCCCcccccccCcceeeeecc-cCCceeEEEEcCCCCCcEEEEecCC---CcEEEecCCChHHhcccccccccccc
Confidence 77777655321 1222222 2233457889999 9888765533 357778877654111100
Q ss_pred -----ccccce-eeEEeec---CCEEEEEEcCCCCCCcEEEEEeCCCCCcceee-ecCCCCceeeeEEEeCC-----EEE
Q 004368 327 -----PRVVGV-DTAASHR---GNHFFITRRSDELFNSELLACPVDNTSETTVL-IPHRESVKLQDIQLFID-----HLA 391 (758)
Q Consensus 327 -----~~~~~~-~~~~s~d---g~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~-----~l~ 391 (758)
.....+ ...|+|+ ++.++..+.. ..+...+... +....+ .-......+..+.+..+ .++
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l 233 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALE-----QAIIYQRGKD-GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI 233 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETT-----EEEEEEECTT-SCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCC-----CcEEEEccCC-CceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence 011111 2237776 6655555443 2333333333 222111 11122334667777665 577
Q ss_pred EEEEeCCeeEEEEEEcCC
Q 004368 392 VYEREGGLQKITTYRLPA 409 (758)
Q Consensus 392 ~~~~~~g~~~l~v~~l~~ 409 (758)
++...+|. +.+|++..
T Consensus 234 ~s~~~dg~--i~iwd~~~ 249 (351)
T 3f3f_A 234 ATGCKDGR--IRIFKITE 249 (351)
T ss_dssp EEEETTSC--EEEEEEEE
T ss_pred EEEcCCCe--EEEEeCCC
Confidence 77777775 66777763
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00016 Score=76.98 Aligned_cols=240 Identities=14% Similarity=0.116 Sum_probs=126.3
Q ss_pred EEECCCCCEEEEEEeC-----CCCeEEEEEEEECCCCceeec-cccC--------cceeEEEecCCeEEEEEeCCCCCCc
Q 004368 196 FQVSPDNKLVAYAEDT-----KGDEIYTVYVIDIETGTPVGK-PLVG--------VTASVEWAGNEALVYITMDEILRPD 261 (758)
Q Consensus 196 ~~~SPDG~~lAy~~~~-----~G~e~~~l~v~dl~~g~~~~~-~~~~--------~~~~~~wspDg~l~y~~~~~~~~~~ 261 (758)
+.+||||++|..+... .|.....|.++|+++++.... .+.. ....+++||||+.+|+.... ...
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~--~~~ 160 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS--PAP 160 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS--SSC
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC--CCC
Confidence 7999999998655421 122346799999999987653 2321 23458999999655665421 123
Q ss_pred eEEEEEcCCCCCCcEE-------EeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce--
Q 004368 262 KAWLHKLEADQSNDIC-------LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-- 332 (758)
Q Consensus 262 ~v~~~~l~~~~~~~~~-------v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-- 332 (758)
.|..+++.+......+ ++...... + +..++||+.+++.....+.- + +..+ . . +......+
T Consensus 161 ~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~-~--~~~~~DG~~~~v~~~~~g~v-~---~~~~-~-~--~~~~~~~~~~ 229 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT-F--FMHCRDGSLAKVAFGTEGTP-E---ITHT-E-V--FHPEDEFLIN 229 (386)
T ss_dssp EEEEEETTTTEEEEEEECCSEEEEEEEETTE-E--EEEETTSCEEEEECCSSSCC-E---EEEC-C-C--CSCTTSCBCS
T ss_pred eEEEEECCCCcEEEEEECCCcceeecCCCce-e--EEECCCCCEEEEECCCCCeE-E---Eeec-c-e--eccccccccc
Confidence 5888888776321111 11111111 1 25678888777755432221 1 1001 0 0 00000000
Q ss_pred eeEEe-ecCCEEEEEEcCCCCCCcEEEEEeCCCCCc---cee-eecC--------CCCceeeeEEEeCCEEEEEEEeC--
Q 004368 333 DTAAS-HRGNHFFITRRSDELFNSELLACPVDNTSE---TTV-LIPH--------RESVKLQDIQLFIDHLAVYEREG-- 397 (758)
Q Consensus 333 ~~~~s-~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~---~~~-l~~~--------~~~~~~~~~~~~~~~l~~~~~~~-- 397 (758)
...|. ++| +++|.+.. .+++.+|+.+... ..+ ++.. ........++..++++|+....+
T Consensus 230 ~~~~~~~dG-~~~~vs~~-----g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~ 303 (386)
T 3sjl_D 230 HPAYSQKAG-RLVWPTYT-----GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE 303 (386)
T ss_dssp CCEEETTTT-EEEEEBTT-----SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred cceeEcCCC-cEEEEeCC-----CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccc
Confidence 11243 455 56666552 4699999865321 111 1110 01112234455567888776532
Q ss_pred -----CeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 398 -----GLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 398 -----g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
...+++++++.. ++.+ +.+.++... .+...++|++..+|+.+ ..-..+..+|..+++
T Consensus 304 ~~hk~~~~~V~viD~~t-~kv~------~~i~vg~~~---~~lavs~D~~~~ly~tn--~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 304 WRHKTASRFVVVLDAKT-GERL------AKFEMGHEI---DSINVSQDEKPLLYALS--TGDKTLYIHDAESGE 365 (386)
T ss_dssp TCTTSCEEEEEEEETTT-CCEE------EEEEEEEEE---CEEEECSSSSCEEEEEE--TTTTEEEEEETTTCC
T ss_pred cccCCCCCEEEEEECCC-CeEE------EEEECCCCc---ceEEECCCCCeEEEEEc--CCCCeEEEEECCCCc
Confidence 346788998874 3322 334433322 23456778864545443 235689999999988
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00052 Score=73.29 Aligned_cols=249 Identities=12% Similarity=-0.018 Sum_probs=125.9
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCc------ee-ecc-ccCcceeEEEecC----C---eEEEEEeCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT------PV-GKP-LVGVTASVEWAGN----E---ALVYITMDE 256 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~------~~-~~~-~~~~~~~~~wspD----g---~l~y~~~~~ 256 (758)
.+..+.|+| ++|+.... + ..|++||+.+++ .. ... -......++|+|| | .++++...+
T Consensus 18 ~i~~~~~~~--~~l~s~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCSG-D----GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp CEEEEEECS--SEEEEEET-T----SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred CeEEEEecC--CeEEEEcC-C----CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 466778999 66665443 3 379999999987 22 221 1223566899999 8 776666543
Q ss_pred CCCCceEEEEEcCCCCCCc---EEEeeecC----CceeeEEEEc----CCCcE-EEEEecCCcceEEEEEeCCC------
Q 004368 257 ILRPDKAWLHKLEADQSND---ICLYHEKD----DIYSLGLQAS----ESKKF-LFIASESKITRFVFYLDVSK------ 318 (758)
Q Consensus 257 ~~~~~~v~~~~l~~~~~~~---~~v~~~~~----~~~~~~~~~S----~Dg~~-l~~~s~~~~~~~l~~~d~~~------ 318 (758)
. .|+++++.++.... ...+.... ......+.|+ ||+++ |+..+. .+ .|+++|+.+
T Consensus 91 g----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 91 G----DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV-KG--TTYIWKFHPFADESN 163 (397)
T ss_dssp S----CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET-TS--CEEEEEEESSSSHHH
T ss_pred C----CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC-CC--cEEEEeCCccccccc
Confidence 2 36666776553211 22332221 1334568899 99999 665443 23 355556555
Q ss_pred CCceE-----Eeec-------cccce-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecC--CC---Ccee
Q 004368 319 PEELR-----VLTP-------RVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPH--RE---SVKL 380 (758)
Q Consensus 319 ~~~~~-----~l~~-------~~~~~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~--~~---~~~~ 380 (758)
+.... .+.. ....+ ...|+|+| .|+ ....+ ..|..+|+... .....+.. .. ...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-~~~~d----g~i~i~d~~~~-~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA-TGFNN----GTVQISELSTL-RPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE-EECTT----SEEEEEETTTT-EEEEEEECCC---CCCCCE
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEE-EEeCC----CcEEEEECCCC-ceeEEEeccccccccCCcc
Confidence 33122 3321 12222 23488988 444 33332 56888888652 22222222 01 2235
Q ss_pred eeEEEe--CCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCc-----eeeccCcccccCCCCcccCCcEEEEEEecCCC
Q 004368 381 QDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGK-----SVEFIDPVYSIDPSESVFSSRILRFHYSSLRT 453 (758)
Q Consensus 381 ~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~-----~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~ 453 (758)
..+.+. +..++....+++...+.+|++.. ++.+..+.... .+........+..+.++++++.++. .+ .
T Consensus 237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~---~ 311 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS-AG---W 311 (397)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE-EE---T
T ss_pred ceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE-Ee---C
Confidence 555554 45665554443335688999874 33221111000 0000001122333455666665533 22 3
Q ss_pred CCEEEEEECCCCc
Q 004368 454 PPSVYDYDMDMGI 466 (758)
Q Consensus 454 P~~i~~~d~~~~~ 466 (758)
-..+..||+.+++
T Consensus 312 dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 312 DGKLRFWDVKTKE 324 (397)
T ss_dssp TSEEEEEETTTTE
T ss_pred CCeEEEEEcCCCc
Confidence 3578899998876
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.6e-06 Score=85.59 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=62.0
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
..|.|+++||..+.. ..|......| ..++.|+.+|++|.++ ..+|+.+.++.+. ..
T Consensus 21 ~~~~l~~~hg~~~~~--~~~~~~~~~l-~~~~~v~~~d~~g~~~----------------~~~~~~~~i~~~~-----~~ 76 (244)
T 2cb9_A 21 GGKNLFCFPPISGFG--IYFKDLALQL-NHKAAVYGFHFIEEDS----------------RIEQYVSRITEIQ-----PE 76 (244)
T ss_dssp CSSEEEEECCTTCCG--GGGHHHHHHT-TTTSEEEEECCCCSTT----------------HHHHHHHHHHHHC-----SS
T ss_pred CCCCEEEECCCCCCH--HHHHHHHHHh-CCCceEEEEcCCCHHH----------------HHHHHHHHHHHhC-----CC
Confidence 357889999965543 2344433333 4689999999998532 1355555555442 13
Q ss_pred CcEEEEEeChhHHHHHHHHhhC---CCceeEEEEcCCc
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMR---PDLFKAAVAAVPF 629 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~~~ 629 (758)
+++.++|+|+||.++..++.+. ++.++++|+..+.
T Consensus 77 ~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~ 114 (244)
T 2cb9_A 77 GPYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAY 114 (244)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred CCEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCC
Confidence 5799999999999998888764 5678887776654
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-06 Score=95.58 Aligned_cols=114 Identities=12% Similarity=0.067 Sum_probs=79.1
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCc---EEEEEecCCCCCC-----c----hhHHhccc-------------
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGF---IFAIAQIRGGGEL-----G----RQWYENGK------------- 568 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~---~v~~~~~RG~g~~-----G----~~~~~~~~------------- 568 (758)
...|.||++||..+.. ..|......|.++|| .|+.+|+||+|.. . ......+.
T Consensus 20 ~~~ppVVLlHG~g~s~--~~w~~la~~La~~Gy~~~~Via~DlpG~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~~l~~ 97 (484)
T 2zyr_A 20 EDFRPVVFVHGLAGSA--GQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPETLDK 97 (484)
T ss_dssp -CCCCEEEECCTTCCG--GGGHHHHHHHHHTTCCGGGEEEECCCHHHHHHHTTTSTTTTTGGGHHHHHHGGGSCHHHHHH
T ss_pred CCCCEEEEECCCCCCH--HHHHHHHHHHHHcCCCcceEEEEECCCCCccccccccccccccccccccccccccccccccc
Confidence 3467799999965443 346677788889999 6999999987732 0 00000000
Q ss_pred ------ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCC---CceeEEEEcCCccc
Q 004368 569 ------FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVAAVPFVD 631 (758)
Q Consensus 569 ------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~~~~d 631 (758)
.......++++.+.++.++++- ..+++.++|||+||.++..++.++| +.++++|+.+|..+
T Consensus 98 v~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~ 167 (484)
T 2zyr_A 98 ILSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWG 167 (484)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCS
T ss_pred cccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccc
Confidence 0011234677777887777653 2378999999999999999999988 48999998887654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0003 Score=76.12 Aligned_cols=119 Identities=15% Similarity=0.005 Sum_probs=71.5
Q ss_pred CCCCCEEEEEEeCCCCeE-EEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCC------CCCCceEEEEEcCC
Q 004368 199 SPDNKLVAYAEDTKGDEI-YTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDE------ILRPDKAWLHKLEA 270 (758)
Q Consensus 199 SPDG~~lAy~~~~~G~e~-~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~------~~~~~~v~~~~l~~ 270 (758)
.||+++ +|..+...... ..|.++|+++++.+.. ...... ++++||||+.+|++... +.+...|..++..+
T Consensus 81 ~~~~~~-vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 81 APDARR-VYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCTTE-EEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCE-EEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 478887 46666432111 6899999999998763 323334 79999999544554310 01123577778777
Q ss_pred CCCCcEEEee-ecC---CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 271 DQSNDICLYH-EKD---DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 271 ~~~~~~~v~~-~~~---~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
......+... ... ...-..+.+||||++|++... ...+.|.++|+.+.+
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~-~~~~~VsVID~~t~k 211 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF-SPAPAVGVVDLEGKT 211 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC-SSSCEEEEEETTTTE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEec-CCCCeEEEEECCCCe
Confidence 6332222222 000 001124678999999988642 234679999998876
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.17 E-value=2e-06 Score=85.31 Aligned_cols=89 Identities=9% Similarity=0.058 Sum_probs=60.8
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.|+++||..+.. ..|......|. . +.|+.+|++|.+. ..+|+.+.++.+.. .+
T Consensus 17 ~~~l~~~hg~~~~~--~~~~~~~~~l~-~-~~v~~~d~~g~~~----------------~~~~~~~~i~~~~~-----~~ 71 (230)
T 1jmk_C 17 EQIIFAFPPVLGYG--LMYQNLSSRLP-S-YKLCAFDFIEEED----------------RLDRYADLIQKLQP-----EG 71 (230)
T ss_dssp SEEEEEECCTTCCG--GGGHHHHHHCT-T-EEEEEECCCCSTT----------------HHHHHHHHHHHHCC-----SS
T ss_pred CCCEEEECCCCCch--HHHHHHHHhcC-C-CeEEEecCCCHHH----------------HHHHHHHHHHHhCC-----CC
Confidence 47789999965543 23444444443 4 9999999997653 12466666555421 35
Q ss_pred cEEEEEeChhHHHHHHHHhhC---CCceeEEEEcCCc
Q 004368 596 KLCIEGRSAGGLLIGAVLNMR---PDLFKAAVAAVPF 629 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~~~ 629 (758)
++.++|+|+||.++..++.+. ++.++.+|+..+.
T Consensus 72 ~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~ 108 (230)
T 1jmk_C 72 PLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSY 108 (230)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred CeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCC
Confidence 799999999999998888764 3567877776654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=5.8e-05 Score=94.26 Aligned_cols=242 Identities=14% Similarity=0.090 Sum_probs=136.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc--ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.+||||++++..... | .|+++|+.+++..... -.+....++|+|||..+++...+ ..|.++++.
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~-g----~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d----g~i~vwd~~ 1033 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDED-G----AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED----SVIQVWNWQ 1033 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETT-S----CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS----SBEEEEETT
T ss_pred cEEEEEEcCCCCEEEEEcCC-C----CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC----CEEEEEECC
Confidence 36678999999999987653 3 5899999998876531 12235669999999433343322 247788887
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEEEc
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRR 348 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~ 348 (758)
++. .... .........+.+++|++.+.. +. ...|.++|+.+++....+......+. ..|+|+|+.++..+.
T Consensus 1034 ~~~---~~~~-~~~~~~v~~~~~~~~~~l~~~-~~---dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~ 1105 (1249)
T 3sfz_A 1034 TGD---YVFL-QAHQETVKDFRLLQDSRLLSW-SF---DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA 1105 (1249)
T ss_dssp TTE---EECC-BCCSSCEEEEEECSSSEEEEE-ES---SSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECC
T ss_pred CCc---eEEE-ecCCCcEEEEEEcCCCcEEEE-EC---CCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcC
Confidence 652 2222 222333446789998875433 22 23578889887763344443333333 348999997766544
Q ss_pred CCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCccccccCCcee-ecc
Q 004368 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV-EFI 426 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i-~~p 426 (758)
+ ..|..+++.+......+..+.. .+..+.+..+ .++++...+|. +++|++.. |+.+..+...... ...
T Consensus 1106 d-----~~v~iwd~~~~~~~~~l~~h~~--~v~~~~~s~dg~~lat~~~dg~--i~vwd~~~-~~~~~~~~~~~~~~~~~ 1175 (1249)
T 3sfz_A 1106 D-----KTAKIWSFDLLSPLHELKGHNG--CVRCSAFSLDGILLATGDDNGE--IRIWNVSD-GQLLHSCAPISVEEGTA 1175 (1249)
T ss_dssp S-----SCCCEECSSSSSCSBCCCCCSS--CEEEEEECSSSSEEEEEETTSC--CCEEESSS-SCCCCCCCCCC------
T ss_pred C-----CcEEEEECCCcceeeeeccCCC--cEEEEEECCCCCEEEEEeCCCE--EEEEECCC-CceEEEecccccccccc
Confidence 3 2355566654322222333322 3455555543 23445556665 77888874 3322111000000 011
Q ss_pred CcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 427 DPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 427 ~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.....+....+++++..++.. + ..+..+|+.+++
T Consensus 1176 ~~~~~v~~l~fs~dg~~l~s~--~----g~v~vwd~~~g~ 1209 (1249)
T 3sfz_A 1176 THGGWVTDVCFSPDSKTLVSA--G----GYLKWWNVATGD 1209 (1249)
T ss_dssp -CCSCCCEEEECTTSSCEEEE--S----SSEEEBCSSSCB
T ss_pred ccCceEEEEEECCCCCEEEEC--C----CeEEEEECCCCc
Confidence 122234456677788776432 2 578889988876
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.15 E-value=8.2e-05 Score=81.24 Aligned_cols=198 Identities=12% Similarity=0.155 Sum_probs=114.9
Q ss_pred EeeEEECCCCC-EEEEEEeCCCCeEEEEEEEECCCCcee----e-c-cc---cCcceeEEEecCC-eEEEEEeCCCCCCc
Q 004368 193 VGCFQVSPDNK-LVAYAEDTKGDEIYTVYVIDIETGTPV----G-K-PL---VGVTASVEWAGNE-ALVYITMDEILRPD 261 (758)
Q Consensus 193 i~~~~~SPDG~-~lAy~~~~~G~e~~~l~v~dl~~g~~~----~-~-~~---~~~~~~~~wspDg-~l~y~~~~~~~~~~ 261 (758)
+..+.|+|+++ +|+- ...+| .|++||+.++... . . .. ......++|+|++ .++++...+ .
T Consensus 184 v~~l~~~~~~~~~l~s-~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d----g 254 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLS-ASDDH----TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD----Q 254 (430)
T ss_dssp CCCEEECTTSTTEEEE-ECTTS----CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT----S
T ss_pred eEEEEeCCCCCCeEEE-EeCCC----eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC----C
Confidence 56789999999 5553 33344 5999999874321 0 0 11 2235668999966 666665543 2
Q ss_pred eEEEEEcCCCCC-CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeecccccee-eEEee
Q 004368 262 KAWLHKLEADQS-NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVD-TAASH 338 (758)
Q Consensus 262 ~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~-~~~s~ 338 (758)
.|+++++.+... .....+... ......+.|+|++++++++.... ..|.++|+.+.. ....+......+. ..|+|
T Consensus 255 ~i~i~d~~~~~~~~~~~~~~~~-~~~v~~i~~~p~~~~~l~tg~~d--g~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 255 KLMIWDTRNNNTSKPSHTVDAH-TAEVNCLSFNPYSEFILATGSAD--KTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp EEEEEETTCSCSSSCSEEEECC-SSCEEEEEECSSCTTEEEEEETT--SEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred eEEEEECCCCCCCcceeEeecC-CCCeEEEEeCCCCCCEEEEEeCC--CeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence 588888876531 122233222 22344688999999766655443 347778887643 3444443433333 34999
Q ss_pred cCCEEEEEEcCCCCCCcEEEEEeCCCCCc-----------ceeeec-CCCCceeeeEEEeCC--EEEEEEEeCCeeEEEE
Q 004368 339 RGNHFFITRRSDELFNSELLACPVDNTSE-----------TTVLIP-HRESVKLQDIQLFID--HLAVYEREGGLQKITT 404 (758)
Q Consensus 339 dg~~l~~~s~~~~~~~~~L~~~~~~~~~~-----------~~~l~~-~~~~~~~~~~~~~~~--~l~~~~~~~g~~~l~v 404 (758)
+|+.+++....+ ..|..+++...+. ...+.. ......+..+.+..+ ++++....++. +.+
T Consensus 332 ~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~--i~i 405 (430)
T 2xyi_A 332 HNETILASSGTD----RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI--MQV 405 (430)
T ss_dssp SCTTEEEEEETT----SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE--EEE
T ss_pred CCCCEEEEEeCC----CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC--EEE
Confidence 998766666554 2455556543111 122221 222334677777754 36667776765 668
Q ss_pred EEcC
Q 004368 405 YRLP 408 (758)
Q Consensus 405 ~~l~ 408 (758)
|+++
T Consensus 406 w~~~ 409 (430)
T 2xyi_A 406 WQMA 409 (430)
T ss_dssp EEEC
T ss_pred eEcc
Confidence 8876
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00062 Score=71.50 Aligned_cols=154 Identities=7% Similarity=0.044 Sum_probs=94.9
Q ss_pred EEeeEEECC--CCCEEEEEEeCCCCeEEEEEEEECCCCceeecc---ccCcceeEEEecCCeEEEEEeCCCCCCceEEEE
Q 004368 192 SVGCFQVSP--DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP---LVGVTASVEWAGNEALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 192 ~i~~~~~SP--DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~---~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~ 266 (758)
.+..+.|+| +|++|+-... +| .|++||+.+++..... .......++|+|||.++.+...+ ..|.++
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~-dg----~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d----g~i~iw 197 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADN-RG----TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD----GILDVY 197 (343)
T ss_dssp CEEEEECCC---CCEEEEEET-TC----CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT----SCEEEE
T ss_pred CEEEEEcCCCCCCCEEEEEeC-CC----cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC----CEEEEE
Confidence 377889999 9999875553 33 6999999999875431 12235668999999666664432 248888
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec---cccce---eeEEeecC
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP---RVVGV---DTAASHRG 340 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~---~~~~~---~~~~s~dg 340 (758)
++.++.. ....+..........+.|+|||++|+..+. . .|.++|+.+++....+.. ....+ ...|+|+|
T Consensus 198 d~~~~~~-~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 272 (343)
T 3lrv_A 198 NLSSPDQ-ASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q---TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG 272 (343)
T ss_dssp ESSCTTS-CCEECCCCTTSCEEEEEECTTSSEEEEEES-S---BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS
T ss_pred ECCCCCC-CccEEeccCCCCEEEEEEeCCCCEEEEEeC-C---eEEEEEcCCCCcceeecccccccccccceEEEECCCC
Confidence 9887632 113444322334457889999999887662 2 688889887652222221 11111 24599999
Q ss_pred CEEEEEEcCCCCCCcEEEEEe
Q 004368 341 NHFFITRRSDELFNSELLACP 361 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~ 361 (758)
+.|+..+..+ ...+|+.++
T Consensus 273 ~~l~~~s~~d--~~i~v~~~~ 291 (343)
T 3lrv_A 273 KNMIAYSNES--NSLTIYKFD 291 (343)
T ss_dssp SEEEEEETTT--TEEEEEEEC
T ss_pred CEEEEecCCC--CcEEEEEEc
Confidence 9887766533 134555443
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00019 Score=75.48 Aligned_cols=115 Identities=10% Similarity=0.084 Sum_probs=74.5
Q ss_pred EEeeEEECCC----CCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEec-CCeEEEEEeCCCCCCceEE
Q 004368 192 SVGCFQVSPD----NKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAG-NEALVYITMDEILRPDKAW 264 (758)
Q Consensus 192 ~i~~~~~SPD----G~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wsp-Dg~l~y~~~~~~~~~~~v~ 264 (758)
.+..+.|||| |++|+.... +| .|++||+.+++.... . .......+.|+| |+.++++...+. .|.
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~-dg----~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg----~i~ 141 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGS-RG----IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH----ALR 141 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEET-TC----EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTS----CEE
T ss_pred cEEEEEeccCCCCCCCEEEEecC-CC----EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCC----eEE
Confidence 3677899999 667765543 33 799999999887653 2 223366799999 675555554332 488
Q ss_pred EEEcCCCCCCcEEEee--ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 265 LHKLEADQSNDICLYH--EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 265 ~~~l~~~~~~~~~v~~--~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
++++.++ +....+. .........+.|+|||++|+..+.+ ..|.++|+.+++
T Consensus 142 iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~ 194 (366)
T 3k26_A 142 LWNIQTD--TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD---HSLKLWRINSKR 194 (366)
T ss_dssp EEETTTT--EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT---SCEEEEESCSHH
T ss_pred EEEeecC--eEEEEecccccccCceeEEEECCCCCEEEEecCC---CCEEEEECCCCc
Confidence 8888765 3333332 1223344578899999998765543 347777877643
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00021 Score=75.93 Aligned_cols=122 Identities=16% Similarity=0.095 Sum_probs=72.4
Q ss_pred EECCCCCEEEEEEeCC-CCeEEEEEEEECCCCceeeccccCcceeEEEecCCeEEEEEeC------CCCCCceEEEEEcC
Q 004368 197 QVSPDNKLVAYAEDTK-GDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMD------EILRPDKAWLHKLE 269 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~-G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg~l~y~~~~------~~~~~~~v~~~~l~ 269 (758)
...|||+++ |..+.. ......|+++|.++++.+...-.+....+++||||+.+|++.. .+.+...|..++..
T Consensus 39 ~~~pd~~~v-yV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 39 APAPDARRV-YVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCCTTEE-EEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred ccCCCCCEE-EEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 457999996 666653 1112589999999999875311122234999999954455431 00112347777877
Q ss_pred CCCCCcEEEeee-cC---CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 270 ADQSNDICLYHE-KD---DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 270 ~~~~~~~~v~~~-~~---~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
+......+.... .. ...-..+.+||||++|++.. ......|.++|+++.+
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan-~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ-FSPAPAVGVVDLEGKA 171 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEE-CSSSCEEEEEETTTTE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEE-cCCCCeEEEEECCCCc
Confidence 763222222211 00 00112467899999988753 3334679999999876
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00041 Score=72.23 Aligned_cols=195 Identities=11% Similarity=0.048 Sum_probs=107.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc--ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++|+-... + ..|++++...+...... .........|++++.++++...+. .+.++++.
T Consensus 88 ~V~~~~~s~dg~~l~s~~~-d----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~----~~~~~d~~ 158 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSW-D----GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK----TIKLWNTL 158 (340)
T ss_dssp CEEEEEECTTSSEEEEEET-T----SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS----CEEEECTT
T ss_pred CEEEEEECCCCCEEEEEcc-c----ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCC----eEEEEEeC
Confidence 4678899999999885543 2 36899999887765432 122345578899984334443221 35555654
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEEc
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRR 348 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~ 348 (758)
.. ................+.+++++...++.+... ...|.++|+.+++....+......+.. .|+|+|+.|+..+.
T Consensus 159 ~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~-d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 159 GV--CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW-DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp SC--EEEEECSSSCSSCEEEEEECSCSSSCEEEEEET-TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CC--ceEEEEeccccCcccceEEccCCCCcEEEEEcC-CCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence 43 122222222222333566788765433322221 234677788776522333333333333 48999997765544
Q ss_pred CCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+ ..|...|+.... ....+.... .+..+.+..+..++....++. +.+|++.
T Consensus 236 D-----g~i~iwd~~~~~-~~~~~~~~~--~v~~~~~~~~~~~~~~~~d~~--i~iwd~~ 285 (340)
T 4aow_A 236 D-----GQAMLWDLNEGK-HLYTLDGGD--IINALCFSPNRYWLCAATGPS--IKIWDLE 285 (340)
T ss_dssp T-----CEEEEEETTTTE-EEEEEECSS--CEEEEEECSSSSEEEEEETTE--EEEEETT
T ss_pred C-----CeEEEEEeccCc-eeeeecCCc--eEEeeecCCCCceeeccCCCE--EEEEECC
Confidence 3 467777876522 212222222 345566665555555556664 7788887
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00037 Score=73.80 Aligned_cols=189 Identities=12% Similarity=0.095 Sum_probs=109.1
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-cCcceeEEEecC--CeEEEEEeCCCCCCceEEEEEc
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGN--EALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~wspD--g~l~y~~~~~~~~~~~v~~~~l 268 (758)
+....|+||+++|+-... + .+|++||+.+++.+.. .. ......+.|+|+ |.++++...+. .|.++++
T Consensus 157 v~~~~~~~~~~~l~t~s~-D----~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg----~v~~wd~ 227 (354)
T 2pbi_B 157 LSACSFTNSDMQILTASG-D----GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK----KAMVWDM 227 (354)
T ss_dssp EEEEEECSSSSEEEEEET-T----SEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTS----CEEEEET
T ss_pred EEEEEEeCCCCEEEEEeC-C----CcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCC----eEEEEEC
Confidence 567899999999875443 2 4799999999987652 11 122445778774 55555554332 4888898
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccc--cce-eeEEeecCCEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV--VGV-DTAASHRGNHFFI 345 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~--~~~-~~~~s~dg~~l~~ 345 (758)
.++. ....+.... .....+.|+|||++|+..+.+ ..|.++|+.++.....+.... .++ ...|+++|+.|+.
T Consensus 228 ~~~~--~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D---~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 228 RSGQ--CVQAFETHE-SDVNSVRYYPSGDAFASGSDD---ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp TTCC--EEEEECCCS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred CCCc--EEEEecCCC-CCeEEEEEeCCCCEEEEEeCC---CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence 8763 333443322 234468899999987765443 236677887654222222211 122 2348999997766
Q ss_pred EEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEE
Q 004368 346 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTY 405 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~ 405 (758)
.+.+ ..|..+|+........+..+.. .+..+.+..+ ..+++...++. +++|
T Consensus 302 g~~d-----~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~D~~--v~vW 353 (354)
T 2pbi_B 302 GYND-----YTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSWDHT--LRVW 353 (354)
T ss_dssp EETT-----SCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEETTSE--EEEE
T ss_pred EECC-----CcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcCCCC--EEec
Confidence 5543 3577778755322222333332 4556666543 23345556664 4444
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0011 Score=77.16 Aligned_cols=237 Identities=12% Similarity=0.065 Sum_probs=127.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCcee----eccc---cCcceeEEEecCCeEEEEEeCCCCCCceEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV----GKPL---VGVTASVEWAGNEALVYITMDEILRPDKAW 264 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~----~~~~---~~~~~~~~wspDg~l~y~~~~~~~~~~~v~ 264 (758)
.+..+.++|++..+..+...+| .|++||+.++... ...+ .+....++|+|||.++.+...+ ..|.
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~----~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D----g~v~ 455 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDK----SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD----GELR 455 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTS----EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT----SEEE
T ss_pred eeEEEEecCCCCCEEEEEeCCC----cEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC----CcEE
Confidence 4667899998755555555444 6999999764321 1112 2235668999999555555433 2588
Q ss_pred EEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc----cccee-eEEeec
Q 004368 265 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR----VVGVD-TAASHR 339 (758)
Q Consensus 265 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~----~~~~~-~~~s~d 339 (758)
++++.++ .....+.... ....++.|+|||++|+..+.+ ..|.++|+.+.. ...+... ...+. ..|+|+
T Consensus 456 vwd~~~~--~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~D---~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 456 LWDLAAG--VSTRRFVGHT-KDVLSVAFSLDNRQIVSASRD---RTIKLWNTLGEC-KYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EEETTTT--EEEEEEECCS-SCEEEEEECTTSSCEEEEETT---SCEEEECTTSCE-EEEECSSTTSCSSCEEEEEECSC
T ss_pred EEECCCC--cceeEEeCCC-CCEEEEEEeCCCCEEEEEeCC---CEEEEEECCCCc-ceeeccCCCCCCCcEEEEEEeCC
Confidence 8888776 2333343332 234578899999998755443 235666765433 2222211 11222 238887
Q ss_pred CCE-EEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCccccc
Q 004368 340 GNH-FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSL 417 (758)
Q Consensus 340 g~~-l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~l 417 (758)
+.. +++....+ ..|...|+.+......+..+. ..+..+.+..+ .++++...++. +++|++.. ++.+.
T Consensus 529 ~~~~~l~s~s~d----~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~--i~iwd~~~-~~~~~-- 597 (694)
T 3dm0_A 529 TLQPTIVSASWD----KTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGV--VLLWDLAE-GKKLY-- 597 (694)
T ss_dssp SSSCEEEEEETT----SCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSB--CEEEETTT-TEEEE--
T ss_pred CCcceEEEEeCC----CeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCe--EEEEECCC-CceEE--
Confidence 742 33333333 356777876532222233333 24556666543 34455666665 67888874 33221
Q ss_pred cCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 418 QGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 418 ~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.+... ..+....+++++..+. ..+ -..+..+|+.+++
T Consensus 598 ------~~~~~-~~v~~~~~sp~~~~l~-~~~----~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 598 ------SLEAN-SVIHALCFSPNRYWLC-AAT----EHGIKIWDLESKS 634 (694)
T ss_dssp ------CCBCS-SCEEEEEECSSSSEEE-EEE----TTEEEEEETTTTE
T ss_pred ------EecCC-CcEEEEEEcCCCcEEE-EEc----CCCEEEEECCCCC
Confidence 11111 1122334455554432 222 2358899998876
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=98.08 E-value=8.9e-06 Score=83.35 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=67.6
Q ss_pred EEEEecCCCccCCC-CCCChHHHHHHHc--CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 518 LLLYGYGSYEICND-PAFNSSRLSLLDR--GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 518 ~vl~~hGg~~~~~~-~~~~~~~~~l~~~--G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
.||++||-.+.... ..|......|.+. |+.|+.+|+ |+|....... +.. ....+++.+.++.+...... .
T Consensus 7 pvVllHG~~~~~~~~~~~~~~~~~L~~~~~g~~v~~~d~-G~g~s~~~~~--~~~---~~~~~~~~~~~~~l~~~~~l-~ 79 (279)
T 1ei9_A 7 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEI-GKTLREDVEN--SFF---LNVNSQVTTVCQILAKDPKL-Q 79 (279)
T ss_dssp CEEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCC-SSSHHHHHHH--HHH---SCHHHHHHHHHHHHHSCGGG-T
T ss_pred cEEEECCCCCCCCCcccHHHHHHHHHHHCCCcEEEEEEe-CCCCcccccc--ccc---cCHHHHHHHHHHHHHhhhhc-c
Confidence 38889996554422 3566667777765 889999997 8775321111 000 11223444445555432211 2
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCc-eeEEEEcCC
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDL-FKAAVAAVP 628 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~-f~a~v~~~~ 628 (758)
+++.++|||+||.++..++.++|+. ++..|+..+
T Consensus 80 ~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~ 114 (279)
T 1ei9_A 80 QGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp TCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred CCEEEEEECHHHHHHHHHHHHcCCcccceEEEecC
Confidence 7899999999999999999999984 888886654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0026 Score=64.06 Aligned_cols=196 Identities=8% Similarity=0.041 Sum_probs=117.9
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc--CcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV--GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~--~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
....+.|+|+++.|.++-. .. ..|++++++++........ ....++++.|++ .+|++.. . ..+|++.++
T Consensus 37 ~~~gi~~d~~~~~ly~~d~-~~---~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~-~---~~~I~~~~~ 108 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDI-SE---PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS-Q---LDRIEVAKM 108 (267)
T ss_dssp EEEEEEEETTTTEEEEEET-TT---TEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET-T---TTEEEEEET
T ss_pred cEEEEEEecCCCEEEEEEC-CC---CEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC-C---CCEEEEEEc
Confidence 3567899999988765543 32 3689999987754332111 124568999987 6655532 2 246888887
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-ccc-eeeEEeecCCEEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHFFIT 346 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-~~~-~~~~~s~dg~~l~~~ 346 (758)
.+.. ...+.... ...-.++.++|++.+|++.........|+++++++.. .+.+... ... ....+++++++||+.
T Consensus 109 ~g~~--~~~~~~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~ 184 (267)
T 1npe_A 109 DGTQ--RRVLFDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWV 184 (267)
T ss_dssp TSCS--CEEEECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred CCCC--EEEEEECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEE
Confidence 6432 22333221 1222467889988888886544335688999987654 3433321 111 123488889988887
Q ss_pred EcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
.... .+|++++.++. ....++... ....++.++++.+++....++ .+.+++.+
T Consensus 185 d~~~----~~I~~~~~~g~-~~~~~~~~~--~~P~gi~~d~~~lyva~~~~~--~v~~~d~~ 237 (267)
T 1npe_A 185 DAGT----HRAECLNPAQP-GRRKVLEGL--QYPFAVTSYGKNLYYTDWKTN--SVIAMDLA 237 (267)
T ss_dssp ETTT----TEEEEEETTEE-EEEEEEECC--CSEEEEEEETTEEEEEETTTT--EEEEEETT
T ss_pred ECCC----CEEEEEecCCC-ceEEEecCC--CCceEEEEeCCEEEEEECCCC--eEEEEeCC
Confidence 5543 58999998652 222233321 234577788888877554433 47777765
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0043 Score=64.92 Aligned_cols=246 Identities=13% Similarity=0.108 Sum_probs=126.8
Q ss_pred EEeeEEECCC---CCEEEEEEeCCCCeEEEEEEEECCC-Cceeeccc---cCcceeEEEecCCeEEEEEeCCCCCCceEE
Q 004368 192 SVGCFQVSPD---NKLVAYAEDTKGDEIYTVYVIDIET-GTPVGKPL---VGVTASVEWAGNEALVYITMDEILRPDKAW 264 (758)
Q Consensus 192 ~i~~~~~SPD---G~~lAy~~~~~G~e~~~l~v~dl~~-g~~~~~~~---~~~~~~~~wspDg~l~y~~~~~~~~~~~v~ 264 (758)
.+..+.|||| |++||.... +| .|++||+.+ ++.....+ .+....++|+||+.++++...+ ..|.
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~v~ 111 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSW-AN----DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD----KTAK 111 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEET-TS----EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT----SEEE
T ss_pred ceEEEEEcCCCCCceEEEEECC-CC----cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC----CcEE
Confidence 5778899999 588876543 33 699999987 55442222 3336679999999544454432 2588
Q ss_pred EEEcCCCCCCcEEEeeecCCceeeEEEE--cCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCE
Q 004368 265 LHKLEADQSNDICLYHEKDDIYSLGLQA--SESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNH 342 (758)
Q Consensus 265 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~--S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~ 342 (758)
++++.++. ...+.. .......+.| ++|+++|+..+.+ ..|.++|+.+++....+.... ....+...+..
T Consensus 112 iwd~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~ 182 (368)
T 3mmy_A 112 MWDLSSNQ--AIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSWD---KTLKFWDTRSSNPMMVLQLPE--RCYCADVIYPM 182 (368)
T ss_dssp EEETTTTE--EEEEEE--CSSCEEEEEEEECSSCEEEEEEETT---SEEEEECSSCSSCSEEEECSS--CEEEEEEETTE
T ss_pred EEEcCCCC--ceeecc--ccCceEEEEEEeCCCCCEEEEccCC---CcEEEEECCCCcEEEEEecCC--CceEEEecCCe
Confidence 88887662 222222 2223346778 9999987765543 358888988766233333222 12234455666
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCCCcceeeecCC--CCceeeeEEEeCC---EEEEEEEeCCeeEEEEEEcCCCCC--ccc
Q 004368 343 FFITRRSDELFNSELLACPVDNTSETTVLIPHR--ESVKLQDIQLFID---HLAVYEREGGLQKITTYRLPAVGE--PLK 415 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~---~l~~~~~~~g~~~l~v~~l~~~g~--~~~ 415 (758)
+++.+..+ .+..+++.........+... .......+..... ..++....++. +.+|+++.... ...
T Consensus 183 ~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~--i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 183 AVVATAER-----GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR--VAIHYINPPNPAKDNF 255 (368)
T ss_dssp EEEEEGGG-----CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE--EEEEESSCSCHHHHSE
T ss_pred eEEEeCCC-----cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc--EEEEecCCCCccccce
Confidence 66655432 35556665422211122111 1222222333222 22455556664 67888874211 010
Q ss_pred cccCCce----eeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 416 SLQGGKS----VEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 416 ~l~~~~~----i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.+..... ...+...+.+..+.++++++.++.... -..+..+|+.+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~----dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS----DGRFSFWDKDART 306 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET----TSCEEEEETTTTE
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEcc----CCeEEEEECCCCc
Confidence 0000000 000000012333455666765543322 2468889988876
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00025 Score=80.73 Aligned_cols=196 Identities=10% Similarity=0.029 Sum_probs=112.1
Q ss_pred EeeEEECC--CCCEEEEEEeCCCCeEEEEEEEECCCC--------ceeec-c-ccCcceeEEEecCC-eEEEEEeCCCCC
Q 004368 193 VGCFQVSP--DNKLVAYAEDTKGDEIYTVYVIDIETG--------TPVGK-P-LVGVTASVEWAGNE-ALVYITMDEILR 259 (758)
Q Consensus 193 i~~~~~SP--DG~~lAy~~~~~G~e~~~l~v~dl~~g--------~~~~~-~-~~~~~~~~~wspDg-~l~y~~~~~~~~ 259 (758)
+..+.||| ||++||.... +| .|+|||+.++ +.... . .......++|+||| .++....+ ...
T Consensus 67 v~~~~~sp~~~~~~l~s~~~-dg----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~ 140 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDE-SG----KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG-RDN 140 (615)
T ss_dssp EEEEEECSSTTCCEEEEEET-TS----EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC-SSC
T ss_pred EEEEEECcCCCCCEEEEecC-CC----EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC-CCC
Confidence 67889999 9999987654 33 6999999765 22221 1 12335678999999 55544433 222
Q ss_pred CceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc---cee-eE
Q 004368 260 PDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV---GVD-TA 335 (758)
Q Consensus 260 ~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~---~~~-~~ 335 (758)
...|+.++ .+ +....+... ......+.|+||+++++++.... ..|.++|+.+++....+..... .+. ..
T Consensus 141 ~~~v~~~d--~~--~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d--~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 141 FGVFISWD--SG--NSLGEVSGH-SQRINACHLKQSRPMRSMTVGDD--GSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp SEEEEETT--TC--CEEEECCSC-SSCEEEEEECSSSSCEEEEEETT--TEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred ccEEEEEE--CC--CcceeeecC-CccEEEEEECCCCCcEEEEEeCC--CcEEEEeCCCcceeeeecccCCCCceEEEEE
Confidence 34566655 22 223333332 23344688999998655544433 3567778876552333333333 333 34
Q ss_pred Eeec-CCEEEEEEcCCCCCCcEEEEEeCCCCCcceeee-cC--CCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 336 ASHR-GNHFFITRRSDELFNSELLACPVDNTSETTVLI-PH--RESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 336 ~s~d-g~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~-~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
|+|+ |+.|+..+.. ..|..+++.+. .....+ .. .....+..+.+....++++...++. +.+|++..
T Consensus 214 ~~~~~~~~l~~~~~d-----g~i~vwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~--i~~wd~~~ 283 (615)
T 1pgu_A 214 FSPDSGEFVITVGSD-----RKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT--IRVWDVTT 283 (615)
T ss_dssp ECSTTCCEEEEEETT-----CCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE--EEEEETTT
T ss_pred ECCCCCCEEEEEeCC-----CeEEEEECCCC-CEeEEecccccccCCceEEEEEcCCCEEEEEcCCCc--EEEEECCC
Confidence 8999 8877666543 35777887653 222233 10 2223455666643334445555654 77888873
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.03 E-value=0.001 Score=70.70 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=49.0
Q ss_pred eEEECCCCCEEEEEEe-----CCCCeEEEEEEEECCCCceeec-ccc-------CcceeEEEecCCeEEEEEeCCCCCCc
Q 004368 195 CFQVSPDNKLVAYAED-----TKGDEIYTVYVIDIETGTPVGK-PLV-------GVTASVEWAGNEALVYITMDEILRPD 261 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~-----~~G~e~~~l~v~dl~~g~~~~~-~~~-------~~~~~~~wspDg~l~y~~~~~~~~~~ 261 (758)
.+.+||||++|..+.. ..|.....|.++|+++++.... .+. .....+++||||+.+|++... ...
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~--~~~ 131 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS--PAT 131 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES--SSE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC--CCC
Confidence 7899999999866543 1344456799999999887642 221 123458999999666665421 123
Q ss_pred eEEEEEcCCC
Q 004368 262 KAWLHKLEAD 271 (758)
Q Consensus 262 ~v~~~~l~~~ 271 (758)
.|..+++.+.
T Consensus 132 ~v~v~d~~~~ 141 (361)
T 2oiz_A 132 SIGIVDVAKG 141 (361)
T ss_dssp EEEEEETTTT
T ss_pred eEEEEECCCC
Confidence 4666676654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.02 E-value=8e-05 Score=79.25 Aligned_cols=194 Identities=12% Similarity=0.050 Sum_probs=97.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCc---e-eec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT---P-VGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~---~-~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~ 265 (758)
.+..+.|||||++||.... +| .|++||+.+++ . ... ........++|+||+ .|+....+. .|.+
T Consensus 57 ~v~~~~~s~~~~~l~s~s~-d~----~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i 126 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCSQ-DR----NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR-----VISV 126 (377)
T ss_dssp CEEEEEECTTTCCEEEEET-TS----SEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS-----CEEE
T ss_pred eEEEEEEeCCCCEEEEEeC-CC----eEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCC-----eEEE
Confidence 4778899999999986654 23 59999999887 2 211 122335679999999 555544332 3667
Q ss_pred EEcCCCCCC-cEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC--------------c-eEEee--c
Q 004368 266 HKLEADQSN-DICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE--------------E-LRVLT--P 327 (758)
Q Consensus 266 ~~l~~~~~~-~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~--------------~-~~~l~--~ 327 (758)
+++.++... ....+..........+.|+|||++|+..+.+ + .|.++|+.... . -..+. .
T Consensus 127 wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (377)
T 3dwl_C 127 CYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD-R--KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYP 203 (377)
T ss_dssp CCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS-S--CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCC
T ss_pred EEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC-C--EEEEEEEEecccCCCccccccccccchhhhhhccc
Confidence 677655310 1223333133344578899999988765543 2 34555553211 0 01111 2
Q ss_pred ccccee-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCc----ceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeE
Q 004368 328 RVVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSE----TTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQK 401 (758)
Q Consensus 328 ~~~~~~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~ 401 (758)
....+. ..|+|+|+.|+..+.+ ..|..+++.+... ...+..+.. .+..+.+..+ .+++....++
T Consensus 204 ~~~~v~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~--- 273 (377)
T 3dwl_C 204 SGGWVHAVGFSPSGNALAYAGHD-----SSVTIAYPSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYS--- 273 (377)
T ss_dssp CSSSEEEEEECTTSSCEEEEETT-----TEEC-CEECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSS---
T ss_pred CCceEEEEEECCCCCEEEEEeCC-----CcEEEEECCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCc---
Confidence 222222 2489999977766543 3466666655322 112333332 3445555433 3334444333
Q ss_pred EEEEEcC
Q 004368 402 ITTYRLP 408 (758)
Q Consensus 402 l~v~~l~ 408 (758)
+.+|...
T Consensus 274 ~~~~~~~ 280 (377)
T 3dwl_C 274 PILLQGN 280 (377)
T ss_dssp EEEECCC
T ss_pred EEEEEeC
Confidence 3356555
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00015 Score=77.61 Aligned_cols=249 Identities=13% Similarity=0.139 Sum_probs=125.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++||-... + .+|+|||+.+++.... .. ......++|+|||.++.+...+ ..+.++++.
T Consensus 68 ~V~~~~~sp~~~~l~s~s~-D----~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d----~~v~iw~~~ 138 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQ-D----GRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD----SACSIFNLS 138 (380)
T ss_dssp CEEEEEECTTSSCEEEEET-T----SEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS----SCCEEEECC
T ss_pred EEEEEEEcCCCCEEEEEeC-C----CeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC----CcEEEEECC
Confidence 3678899999999875443 2 4799999999876542 11 1224568999999544443322 124555664
Q ss_pred CCCCC-----cEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEee-----cccccee-eEEee
Q 004368 270 ADQSN-----DICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-----PRVVGVD-TAASH 338 (758)
Q Consensus 270 ~~~~~-----~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~-----~~~~~~~-~~~s~ 338 (758)
+.... ...++... ......+.|+|++...+++.... ..|.++|+.++.....+. .....+. ..+.+
T Consensus 139 ~~~~~~~~~~~~~~~~gh-~~~v~~~~~~~~~~~~l~s~s~D--~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 139 SQADRDGNMPVSRVLTGH-KGYASSCQYVPDQETRLITGSGD--QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCSSCCCSSTTCCBCCCC-SSCCCCCBCCSSSSSCEEEECTT--SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCccccCCccceeeccCC-CcceEEEEEecCCCCEEEEECCC--CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 42111 01122221 22223456788765444444333 346677888776222221 1111222 22544
Q ss_pred -cCCEEEEEEcCCCCCCcEEEEEeCCCCCcc-eeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCccc
Q 004368 339 -RGNHFFITRRSDELFNSELLACPVDNTSET-TVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLK 415 (758)
Q Consensus 339 -dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~ 415 (758)
++..|+..+ .+ ..|..+|+...... ..+..+.. .+..+.+..+ ..+++...++. +++|++.. +..+.
T Consensus 216 ~~~~~l~sgs-~D----~~v~~wd~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~s~D~~--i~lwd~~~-~~~~~ 285 (380)
T 3iz6_a 216 LNANMFISGS-CD----TTVRLWDLRITSRAVRTYHGHEG--DINSVKFFPDGQRFGTGSDDGT--CRLFDMRT-GHQLQ 285 (380)
T ss_dssp SSCCEEEEEE-TT----SCEEEEETTTTCCCCEEECCCSS--CCCEEEECTTSSEEEEECSSSC--EEEEETTT-TEEEE
T ss_pred CCCCEEEEEE-CC----CeEEEEECCCCCcceEEECCcCC--CeEEEEEecCCCeEEEEcCCCe--EEEEECCC-CcEEE
Confidence 555444433 33 34666777532222 22333332 3556666553 34456666665 77888874 32221
Q ss_pred cccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 416 SLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 416 ~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
.+..... ........+..+.+++++..++... .-..++.+|..+++.
T Consensus 286 ~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~g~----~dg~i~vwd~~~~~~ 332 (380)
T 3iz6_a 286 VYNREPD-RNDNELPIVTSVAFSISGRLLFAGY----SNGDCYVWDTLLAEM 332 (380)
T ss_dssp EECCCCS-SSCCSSCSCSEEEECSSSSEEEEEC----TTSCEEEEETTTCCE
T ss_pred Eeccccc-ccccccCceEEEEECCCCCEEEEEE----CCCCEEEEECCCCce
Confidence 1110000 0000001133345667776654432 235788999887763
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00029 Score=76.86 Aligned_cols=199 Identities=12% Similarity=0.125 Sum_probs=114.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCC----------Cceee-cc-ccCcceeEEEecCC-eEEEEEeCCCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET----------GTPVG-KP-LVGVTASVEWAGNE-ALVYITMDEIL 258 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~----------g~~~~-~~-~~~~~~~~~wspDg-~l~y~~~~~~~ 258 (758)
.+..++|+|++..+.++....| .|+|||+.+ .+... .. -......++|+|++ .++++...++
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg- 204 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSS----DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH- 204 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSS----CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS-
T ss_pred cEEEEEECCCCCcEEEEECCCC----cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC-
Confidence 3567899998555555554445 599999976 22221 11 11224568999999 4766664332
Q ss_pred CCceEEEEEcCCCCCCc-----EEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC---ceEEeecccc
Q 004368 259 RPDKAWLHKLEADQSND-----ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE---ELRVLTPRVV 330 (758)
Q Consensus 259 ~~~~v~~~~l~~~~~~~-----~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~---~~~~l~~~~~ 330 (758)
.|.++++.++.... ...+.. .......+.|+|++..++++.... ..|+++|+.++. ....+.....
T Consensus 205 ---~i~vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 205 ---TICLWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVADD--QKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp ---CEEEEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEETT--SEEEEEETTCSCSSSCSEEEECCSS
T ss_pred ---eEEEEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEeCC--CeEEEEECCCCCCCcceeEeecCCC
Confidence 47888887643211 112222 222344688999555555444332 457788887652 2333433333
Q ss_pred ceee-EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcc-eeeecCCCCceeeeEEEeC--CEEEEEEEeCCeeEEEEEE
Q 004368 331 GVDT-AASHRGNHFFITRRSDELFNSELLACPVDNTSET-TVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYR 406 (758)
Q Consensus 331 ~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~l~v~~ 406 (758)
.+.. .|+|+++.+++....+ ..|..+|+...... ..+..+.. .+..+.+.. +.++++...++. +.+|+
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~d----g~v~vwd~~~~~~~~~~~~~h~~--~v~~i~~sp~~~~~l~s~~~d~~--i~iwd 350 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSAD----KTVALWDLRNLKLKLHSFESHKD--EIFQVQWSPHNETILASSGTDRR--LHVWD 350 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETT----SEEEEEETTCTTSCSEEEECCSS--CEEEEEECSSCTTEEEEEETTSC--CEEEE
T ss_pred CeEEEEeCCCCCCEEEEEeCC----CeEEEEeCCCCCCCeEEeecCCC--CEEEEEECCCCCCEEEEEeCCCc--EEEEe
Confidence 3433 4899998776665554 46778887653222 22333332 355666654 456777776764 77888
Q ss_pred cCC
Q 004368 407 LPA 409 (758)
Q Consensus 407 l~~ 409 (758)
+..
T Consensus 351 ~~~ 353 (430)
T 2xyi_A 351 LSK 353 (430)
T ss_dssp GGG
T ss_pred CCC
Confidence 874
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0003 Score=81.91 Aligned_cols=195 Identities=11% Similarity=0.029 Sum_probs=110.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc--ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++|+-... + ..|+|||+.+++..... -.+....++|+|||..+++...+. .|.++++.
T Consensus 432 ~v~~v~~s~~g~~l~sgs~-D----g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~----~i~iwd~~ 502 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSW-D----GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR----TIKLWNTL 502 (694)
T ss_dssp CEEEEEECTTSSEEEEEET-T----SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS----CEEEECTT
T ss_pred cEEEEEECCCCCEEEEEeC-C----CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC----EEEEEECC
Confidence 4678899999999985543 2 47999999998765421 122356689999994434444322 36666654
Q ss_pred CCCCCcEEEeee--cCCceeeEEEEcCCCc-EEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEE
Q 004368 270 ADQSNDICLYHE--KDDIYSLGLQASESKK-FLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFI 345 (758)
Q Consensus 270 ~~~~~~~~v~~~--~~~~~~~~~~~S~Dg~-~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~ 345 (758)
.. ....+... ........+.|+|++. .++++.... ..|.++|+.+.+....+..+...+.. .|+|+|+.|+.
T Consensus 503 ~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s 578 (694)
T 3dm0_A 503 GE--CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD--KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS 578 (694)
T ss_dssp SC--EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT--SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CC--cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC--CeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence 32 11222211 1223345678999873 233333332 24677788776522333333333333 48999997765
Q ss_pred EEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 346 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
.+.+ ..|...|+.+. . .+........+..+.+..+..++....++. +++|++..
T Consensus 579 g~~D-----g~i~iwd~~~~-~--~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~--i~iwd~~~ 632 (694)
T 3dm0_A 579 GGKD-----GVVLLWDLAEG-K--KLYSLEANSVIHALCFSPNRYWLCAATEHG--IKIWDLES 632 (694)
T ss_dssp EETT-----SBCEEEETTTT-E--EEECCBCSSCEEEEEECSSSSEEEEEETTE--EEEEETTT
T ss_pred EeCC-----CeEEEEECCCC-c--eEEEecCCCcEEEEEEcCCCcEEEEEcCCC--EEEEECCC
Confidence 5443 34666777652 2 222212223456666666544444444443 78898873
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.01 E-value=5.5e-06 Score=86.79 Aligned_cols=103 Identities=13% Similarity=0.078 Sum_probs=61.6
Q ss_pred EEEEecC-CCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHH-HHHHHcCCCCCC
Q 004368 518 LLLYGYG-SYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACA-EYLIKNCYCTKE 595 (758)
Q Consensus 518 ~vl~~hG-g~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d~~ 595 (758)
.|+++|| |.+. ....|......| ..++.|+.+|.||.|....+. ......+++++.+.+ +.+.... ..+
T Consensus 91 ~l~~~hg~g~~~-~~~~~~~l~~~L-~~~~~v~~~d~~G~g~~~~~~-----~~~~~~~~~~~a~~~~~~i~~~~--~~~ 161 (319)
T 2hfk_A 91 VLVGCTGTAANG-GPHEFLRLSTSF-QEERDFLAVPLPGYGTGTGTG-----TALLPADLDTALDAQARAILRAA--GDA 161 (319)
T ss_dssp EEEEECCCCTTC-STTTTHHHHHTT-TTTCCEEEECCTTCCBC---C-----BCCEESSHHHHHHHHHHHHHHHH--TTS
T ss_pred cEEEeCCCCCCC-cHHHHHHHHHhc-CCCCceEEecCCCCCCCcccc-----cCCCCCCHHHHHHHHHHHHHHhc--CCC
Confidence 7888997 2222 223354443333 479999999999988631000 011123444444432 2222211 236
Q ss_pred cEEEEEeChhHHHHHHHHhhC----CCceeEEEEcCCc
Q 004368 596 KLCIEGRSAGGLLIGAVLNMR----PDLFKAAVAAVPF 629 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~~~ 629 (758)
++.++|+|+||.++..++.+. ++.++++|+..+.
T Consensus 162 p~~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~ 199 (319)
T 2hfk_A 162 PVVLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPY 199 (319)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCC
T ss_pred CEEEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCC
Confidence 799999999999999888875 4567888776653
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0011 Score=69.85 Aligned_cols=198 Identities=12% Similarity=0.087 Sum_probs=108.4
Q ss_pred EEeeEEECCC--CCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc---cCcceeEEEecC--CeEEEEEeCCCCCCceE
Q 004368 192 SVGCFQVSPD--NKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL---VGVTASVEWAGN--EALVYITMDEILRPDKA 263 (758)
Q Consensus 192 ~i~~~~~SPD--G~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~---~~~~~~~~wspD--g~l~y~~~~~~~~~~~v 263 (758)
.+..+.|||+ |++|+-... +| .|++||+.+++.... .. ......++|+|+ +.++++...+ ..|
T Consensus 57 ~v~~~~~~~~~~~~~l~s~~~-dg----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----~~i 127 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILASCSY-DG----KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD----GKV 127 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEET-TS----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT----SEE
T ss_pred cEEEEEeCCCCCCCEEEEecc-CC----EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC----CcE
Confidence 4678899988 888876543 33 599999999863221 22 233567999999 7444444432 247
Q ss_pred EEEEcCCCCCCcEEEeeecCCceeeEEEEcC-------------CCcEEEEEecCCcceEEEEEeCCCCC-ceE---Eee
Q 004368 264 WLHKLEADQSNDICLYHEKDDIYSLGLQASE-------------SKKFLFIASESKITRFVFYLDVSKPE-ELR---VLT 326 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~-------------Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~---~l~ 326 (758)
.++++.+........+... ......+.|+| |+++|+..+.+. .|+++|+.++. ... .+.
T Consensus 128 ~v~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~ 203 (379)
T 3jrp_A 128 SVVEFKENGTTSPIIIDAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN---LVKIWKYNSDAQTYVLESTLE 203 (379)
T ss_dssp EEEECCTTSCCCEEEEECC-TTCEEEEEECCCC----------CTTCEEEEEETTS---CEEEEEEETTTTEEEEEEEEC
T ss_pred EEEecCCCCceeeEEecCC-CCceEEEEEcCccccccccccCCCCCCEEEEEeCCC---eEEEEEecCCCcceeeEEEEe
Confidence 7888876643333333332 23344678999 688877655432 35666665543 122 222
Q ss_pred cccccee-eEEeec---CCEEEEEEcCCCCCCcEEEEEeCCCCCc--ceeeec-CCCCceeeeEEEeCC-EEEEEEEeCC
Q 004368 327 PRVVGVD-TAASHR---GNHFFITRRSDELFNSELLACPVDNTSE--TTVLIP-HRESVKLQDIQLFID-HLAVYEREGG 398 (758)
Q Consensus 327 ~~~~~~~-~~~s~d---g~~l~~~s~~~~~~~~~L~~~~~~~~~~--~~~l~~-~~~~~~~~~~~~~~~-~l~~~~~~~g 398 (758)
.....+. ..|+|+ ++.|+..+ .+ ..|..+++..... ...+.. ......+..+.+..+ .++++...+|
T Consensus 204 ~h~~~v~~~~~sp~~~~~~~l~s~~-~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 204 GHSDWVRDVAWSPTVLLRSYLASVS-QD----RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEE-TT----SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred cccCcEeEEEECCCCCCCCeEEEEe-CC----CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 2222232 348999 55555443 33 2355555544221 112222 112334556666543 2333444566
Q ss_pred eeEEEEEEcCC
Q 004368 399 LQKITTYRLPA 409 (758)
Q Consensus 399 ~~~l~v~~l~~ 409 (758)
. +++|++..
T Consensus 279 ~--i~iw~~~~ 287 (379)
T 3jrp_A 279 K--VTLWKENL 287 (379)
T ss_dssp S--EEEEEEEE
T ss_pred c--EEEEeCCC
Confidence 5 66777764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0043 Score=63.35 Aligned_cols=233 Identities=12% Similarity=0.035 Sum_probs=122.6
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec--cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.| |||++||.... +| .|++||+.+++.... ........++|+||+.++++...+. .+..+++.
T Consensus 20 ~v~~~~~-~~~~~l~s~~~-dg----~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~~~~~ 89 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSR-DG----TVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT----MINGVPLF 89 (313)
T ss_dssp CEEEEEE-EETTEEEEEET-TS----EEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS----CEEEEETT
T ss_pred CcEEEEe-cCCCEEEEEEc-CC----cEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC----eEEEEEee
Confidence 3667788 99999875543 33 699999988876543 1233466799999995444444322 36666665
Q ss_pred CCCCCc-EEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEee-cCCEEEEE
Q 004368 270 ADQSND-ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASH-RGNHFFIT 346 (758)
Q Consensus 270 ~~~~~~-~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~-dg~~l~~~ 346 (758)
...... ...+... ......+.| ++++|+..+.+ ..|.++| .+.....+......+. ..+.+ +++.++..
T Consensus 90 ~~~~~~~~~~~~~~-~~~i~~~~~--~~~~l~~~~~d---~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 90 ATSGEDPLYTLIGH-QGNVCSLSF--QDGVVISGSWD---KTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp CCTTSCC-CEECCC-SSCEEEEEE--ETTEEEEEETT---SEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred ecCCCCcccchhhc-ccCEEEEEe--cCCEEEEEeCC---CCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 443211 2222222 222335556 66776654433 3466667 2222333333333332 23666 78876665
Q ss_pred EcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeecc
Q 004368 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFI 426 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p 426 (758)
+.. ..|..+|.. .....+.......+..+.+..+..++....++. +.+|++.. ++.+ ..+.
T Consensus 162 ~~d-----~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~--i~i~d~~~-~~~~--------~~~~ 222 (313)
T 3odt_A 162 SAD-----KTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGL--IKLVDMHT-GDVL--------RTYE 222 (313)
T ss_dssp ETT-----SCEEEEETT---EEEEEECSSCSSCEEEEEEEETTEEEEEETTSE--EEEEETTT-CCEE--------EEEE
T ss_pred ECC-----CCEEEEecC---ceEEEEeccCcccEEEEEEcCCCeEEEccCCCe--EEEEECCc-hhhh--------hhhh
Confidence 543 346666632 222222221233455666654433556666664 77888874 3321 1122
Q ss_pred CcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 427 DPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 427 ~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.....+....+++++ .+ ++.+ .-..++.+|+.+++
T Consensus 223 ~~~~~i~~~~~~~~~-~l-~~~~---~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 223 GHESFVYCIKLLPNG-DI-VSCG---EDRTVRIWSKENGS 257 (313)
T ss_dssp CCSSCEEEEEECTTS-CE-EEEE---TTSEEEEECTTTCC
T ss_pred cCCceEEEEEEecCC-CE-EEEe---cCCEEEEEECCCCc
Confidence 222223334455565 33 2222 34678999988876
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.004 Score=63.83 Aligned_cols=240 Identities=8% Similarity=0.002 Sum_probs=122.9
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
.+..+.|||||++||-... + ..|++||+.+++.+............+++++.++.+..... .+........
T Consensus 69 ~V~~v~~~~~~~~l~sgs~-D----g~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~----~~~~~~~~~~ 139 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGTS-S----AEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSG----HIHHHDVRVA 139 (318)
T ss_dssp CEEEEEECTTSSEEEEEET-T----SEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTS----EEEEEETTSS
T ss_pred eEEEEEECCCCCEEEEEEC-C----CcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCC----ceEeeecCCC
Confidence 4778899999999986543 2 37999999999876532111222346677775545544322 3445555444
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ce---EEeecccccee-eEEeecCCEEEEE
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-EL---RVLTPRVVGVD-TAASHRGNHFFIT 346 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~---~~l~~~~~~~~-~~~s~dg~~l~~~ 346 (758)
.. ....+.. .......+.++++|++|+..+.+ ..|.++|+.+++ .. .........+. ..+++++..++..
T Consensus 140 ~~-~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 214 (318)
T 4ggc_A 140 EH-HVATLSG-HSQEVCGLRWAPDGRHLASGGND---NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 214 (318)
T ss_dssp SC-EEEEEEC-CSSCEEEEEECTTSSEEEEEETT---SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEE
T ss_pred ce-eEEEEcC-ccCceEEEEEcCCCCEEEEEecC---cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEE
Confidence 22 2222322 23334467789999987754433 236667877654 11 11111222222 2366776666544
Q ss_pred EcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEE-eCCeeEEEEEEcCCCCCccccccCCceeec
Q 004368 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYER-EGGLQKITTYRLPAVGEPLKSLQGGKSVEF 425 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~ 425 (758)
.... ....|...+.... ................+...++.+++... .++ .+++|++.. ++.+ -.+
T Consensus 215 ~~~~--~~~~i~lwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~--~i~iwd~~~-~~~~--------~~l 280 (318)
T 4ggc_A 215 GGGT--SDRHIRIWNVCSG-ACLSAVDAHSQVCSILWSPHYKELISGHGFAQN--QLVIWKYPT-MAKV--------AEL 280 (318)
T ss_dssp EECT--TTCEEEEEETTTC-CEEEEEECSSCEEEEEEETTTTEEEEEECTTTC--CEEEEETTT-CCEE--------EEE
T ss_pred EecC--CCCEEEEEecccc-cccccccceeeeeeeeecccccceEEEEEcCCC--EEEEEECCC-CcEE--------EEE
Confidence 3332 2345666676542 22223333333333344445566655432 344 478898874 3322 122
Q ss_pred cCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECC
Q 004368 426 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMD 463 (758)
Q Consensus 426 p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~ 463 (758)
..+...|..+.+++++..+ ++.+. . ..|..+|+.
T Consensus 281 ~gH~~~V~~l~~spdg~~l-~S~s~-D--~~v~iWd~~ 314 (318)
T 4ggc_A 281 KGHTSRVLSLTMSPDGATV-ASAAA-D--ETLRLWRCF 314 (318)
T ss_dssp CCCSSCEEEEEECTTSSCE-EEEET-T--TEEEEECCS
T ss_pred cCCCCCEEEEEEcCCCCEE-EEEec-C--CeEEEEECC
Confidence 2222234344556666654 33322 1 345555543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0027 Score=65.80 Aligned_cols=195 Identities=11% Similarity=0.044 Sum_probs=104.3
Q ss_pred EEeeEEECCCC-CEEEEEEeCCCCeEEEEEEEECCCCceee---c-ccc---CcceeEEEecCCeEEEEEeCCCCCCceE
Q 004368 192 SVGCFQVSPDN-KLVAYAEDTKGDEIYTVYVIDIETGTPVG---K-PLV---GVTASVEWAGNEALVYITMDEILRPDKA 263 (758)
Q Consensus 192 ~i~~~~~SPDG-~~lAy~~~~~G~e~~~l~v~dl~~g~~~~---~-~~~---~~~~~~~wspDg~l~y~~~~~~~~~~~v 263 (758)
.|..++||||+ ++|| +...+| +|+|||+.+++... . .+. ..+..+.|+|||.++++...+. .+
T Consensus 40 ~V~~v~~sp~~~~~l~-S~s~D~----~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~----~i 110 (340)
T 4aow_A 40 WVTQIATTPQFPDMIL-SASRDK----TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG----TL 110 (340)
T ss_dssp CEEEEEECTTCTTEEE-EEETTS----CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----EE
T ss_pred CEEEEEEeCCCCCEEE-EEcCCC----eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc----cc
Confidence 57788999985 5654 444444 59999998765321 1 222 2356689999995555554332 46
Q ss_pred EEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEee--cccccee-eEEeecC
Q 004368 264 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT--PRVVGVD-TAASHRG 340 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~--~~~~~~~-~~~s~dg 340 (758)
+.++..... ...... ..........+++++++|+..+.+ ..+.++|+.... ..... .....+. ..+++++
T Consensus 111 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d---~~~~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 111 RLWDLTTGT--TTRRFV-GHTKDVLSVAFSSDNRQIVSGSRD---KTIKLWNTLGVC-KYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EEEETTTTE--EEEEEE-CCSSCEEEEEECTTSSCEEEEETT---SCEEEECTTSCE-EEEECSSSCSSCEEEEEECSCS
T ss_pred eEEeecccc--eeeeec-CCCCceeEEEEeecCccceeecCC---CeEEEEEeCCCc-eEEEEeccccCcccceEEccCC
Confidence 666766542 222222 222233355689999987754433 235666776543 22211 1122222 2366666
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 341 NHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
...++++... ...|...++........+..+. ..+..+.+..+ .++++...++. +.+|++..
T Consensus 184 ~~~~~~s~~~---d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~--i~iwd~~~ 246 (340)
T 4aow_A 184 SNPIIVSCGW---DKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQ--AMLWDLNE 246 (340)
T ss_dssp SSCEEEEEET---TSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCE--EEEEETTT
T ss_pred CCcEEEEEcC---CCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCe--EEEEEecc
Confidence 5444443322 2356677776522222233332 23556666543 34455666664 77888873
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00078 Score=79.26 Aligned_cols=196 Identities=14% Similarity=0.116 Sum_probs=110.6
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc---cCcceeEEEecC--CeEEEEEeCCCCCCceEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL---VGVTASVEWAGN--EALVYITMDEILRPDKAWL 265 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~---~~~~~~~~wspD--g~l~y~~~~~~~~~~~v~~ 265 (758)
.+..+.|||||++||.+.. +| .|+|||+.++..... .+ .+.+..++|+|+ +.++++...++ .|.+
T Consensus 11 ~V~~l~~s~dg~~latg~~-dg----~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg----~I~v 81 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSS-DK----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG----KVLI 81 (753)
T ss_dssp CEEEECCCSSSCCEEEEET-TT----EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS----CEEE
T ss_pred eeEEEEECCCCCeEEEEEC-CC----cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC----eEEE
Confidence 4677899999999886643 33 688999875433221 22 223567899998 75545554332 3777
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCC--CcEEEEEecCCcceEEEEEeCCCCC--ceEEeeccccceee-EEee--
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASES--KKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVGVDT-AASH-- 338 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~D--g~~l~~~s~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~~-~~s~-- 338 (758)
+++.++.......+.. .......+.|+|+ |+.++..+.+ ..|.++|+.++. ....+......+.. .|+|
T Consensus 82 wd~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~~l~sgs~d---g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 82 WKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSD---GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETT---SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred EECCCCcccccccccC-CCCCeEEEEECCCCCCCEEEEEeCC---CcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence 7776652112222222 2233457889999 8887765543 357777887653 22333333333332 3777
Q ss_pred -----------cCCEEEEEEcCCCCCCcEEEEEeCCCCCcc-ee---eecCCCCceeeeEEEeCC----EEEEEEEeCCe
Q 004368 339 -----------RGNHFFITRRSDELFNSELLACPVDNTSET-TV---LIPHRESVKLQDIQLFID----HLAVYEREGGL 399 (758)
Q Consensus 339 -----------dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~-~~---l~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 399 (758)
+|+.++..+.++ .|..+|+.+.... .. +..+ ...+..+.+..+ .++++...+|.
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp ---------CGGGCCEEEEETTS-----CEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred cccccccccCCCCCEEEEEECCC-----eEEEEeccCCcccceeeeeecCC--CCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 577666555432 3555555432211 11 2222 234556666544 55666666765
Q ss_pred eEEEEEEcCC
Q 004368 400 QKITTYRLPA 409 (758)
Q Consensus 400 ~~l~v~~l~~ 409 (758)
+.+|++..
T Consensus 231 --I~iwd~~~ 238 (753)
T 3jro_A 231 --CIIWTQDN 238 (753)
T ss_dssp --EEEEEESS
T ss_pred --EEEecCCC
Confidence 77888874
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.8e-05 Score=81.73 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=69.2
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHH-HHHHHHcCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC-AEYLIKNCYCT 593 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d 593 (758)
..|.|+++||..+.. ..|......| ..++.|+.+|.+|.+... .. ..+++++.+. ++.+.+.. .
T Consensus 100 ~~~~l~~lhg~~~~~--~~~~~l~~~L-~~~~~v~~~d~~g~~~~~---~~-------~~~~~~~a~~~~~~i~~~~--~ 164 (329)
T 3tej_A 100 NGPTLFCFHPASGFA--WQFSVLSRYL-DPQWSIIGIQSPRPNGPM---QT-------AANLDEVCEAHLATLLEQQ--P 164 (329)
T ss_dssp SSCEEEEECCTTSCC--GGGGGGGGTS-CTTCEEEEECCCTTTSHH---HH-------CSSHHHHHHHHHHHHHHHC--S
T ss_pred CCCcEEEEeCCcccc--hHHHHHHHhc-CCCCeEEEeeCCCCCCCC---CC-------CCCHHHHHHHHHHHHHHhC--C
Confidence 457899999965543 3344444444 568999999999876421 11 1244555543 33443321 1
Q ss_pred CCcEEEEEeChhHHHHHHHHhh---CCCceeEEEEcCCccc
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNM---RPDLFKAAVAAVPFVD 631 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~---~p~~f~a~v~~~~~~d 631 (758)
.+++.++|||+||.++..++.+ +|+.++.+++..+...
T Consensus 165 ~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~ 205 (329)
T 3tej_A 165 HGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPP 205 (329)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCT
T ss_pred CCCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCC
Confidence 3689999999999999999988 9999999888776543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0041 Score=65.18 Aligned_cols=190 Identities=8% Similarity=0.022 Sum_probs=102.8
Q ss_pred EeeEEE-----CC-CCCEEEEEEeCCCCeEEEEEEEECCCCcee-----ec-ccc---CcceeEEEecCCeEEEEEeCCC
Q 004368 193 VGCFQV-----SP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPV-----GK-PLV---GVTASVEWAGNEALVYITMDEI 257 (758)
Q Consensus 193 i~~~~~-----SP-DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~-----~~-~~~---~~~~~~~wspDg~l~y~~~~~~ 257 (758)
+..+.| +| ||++||-... + .+|++||+.+++.. .. .+. .....++|+||+.++++...+
T Consensus 24 V~~~~~~~s~~~~~d~~~l~sgs~-D----~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D- 97 (343)
T 2xzm_R 24 VTSIVAGFSQKENEDSPVLISGSR-D----KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD- 97 (343)
T ss_dssp EEEEEECCCSSTTCCCCEEEEEET-T----SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT-
T ss_pred hhheeeEEEeecCCCCCEEEEEcC-C----CEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC-
Confidence 556677 76 9998875443 2 36899998765321 11 222 235668999999555555433
Q ss_pred CCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEee---cccccee-
Q 004368 258 LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT---PRVVGVD- 333 (758)
Q Consensus 258 ~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~---~~~~~~~- 333 (758)
..|.++++.++. ....+.... .....+.|+|||++|+..+.+ ..|.++|+.+.. ...+. .....+.
T Consensus 98 ---~~v~lwd~~~~~--~~~~~~~h~-~~v~~v~~sp~~~~l~s~~~d---~~i~~wd~~~~~-~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 98 ---KTLRLWDLRTGT--TYKRFVGHQ-SEVYSVAFSPDNRQILSAGAE---REIKLWNILGEC-KFSSAEKENHSDWVSC 167 (343)
T ss_dssp ---SEEEEEETTSSC--EEEEEECCC-SCEEEEEECSSTTEEEEEETT---SCEEEEESSSCE-EEECCTTTSCSSCEEE
T ss_pred ---CcEEEEECCCCc--EEEEEcCCC-CcEEEEEECCCCCEEEEEcCC---CEEEEEeccCCc-eeeeecccCCCceeee
Confidence 247888887762 333343332 334478899999998765433 346666776432 22221 1111122
Q ss_pred eEEeecC----------CEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEE
Q 004368 334 TAASHRG----------NHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKI 402 (758)
Q Consensus 334 ~~~s~dg----------~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l 402 (758)
..|+|++ ..|+..+. + ..|..++... .....+..+.. .+..+.+..+ .++++...++. +
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~-d----~~i~iwd~~~-~~~~~~~~h~~--~v~~~~~s~~g~~l~sgs~dg~--v 237 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGW-D----GRLKVWNTNF-QIRYTFKAHES--NVNHLSISPNGKYIATGGKDKK--L 237 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEET-T----SEEEEEETTT-EEEEEEECCSS--CEEEEEECTTSSEEEEEETTCE--E
T ss_pred eeeccccccccccCCCCCEEEEEcC-C----CEEEEEcCCC-ceeEEEcCccc--cceEEEECCCCCEEEEEcCCCe--E
Confidence 2367765 44443332 2 3566666432 11111333332 3556666543 23445555664 7
Q ss_pred EEEEcC
Q 004368 403 TTYRLP 408 (758)
Q Consensus 403 ~v~~l~ 408 (758)
++|++.
T Consensus 238 ~iwd~~ 243 (343)
T 2xzm_R 238 LIWDIL 243 (343)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 788884
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0016 Score=70.61 Aligned_cols=196 Identities=10% Similarity=0.148 Sum_probs=108.7
Q ss_pred EEeeEEECC-CCCEEEEEEeCCCCeEEEEEEEECCC---Cceee--cc--ccCcceeEEEecCCeEEEEEeCCCCCCceE
Q 004368 192 SVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIET---GTPVG--KP--LVGVTASVEWAGNEALVYITMDEILRPDKA 263 (758)
Q Consensus 192 ~i~~~~~SP-DG~~lAy~~~~~G~e~~~l~v~dl~~---g~~~~--~~--~~~~~~~~~wspDg~l~y~~~~~~~~~~~v 263 (758)
.+..+.||| ||++||-+.. + ..|+|||+.+ +.... .. -.+....++|+||+.++++...+. .|
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~-d----g~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg----~i 135 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSD-Q----GVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDG----QI 135 (437)
T ss_dssp CEEEEEEECSSSCEEEEEET-T----SEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTS----EE
T ss_pred ceEEEEECCCCCCEEEEecC-C----ceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCC----EE
Confidence 477889999 9999986653 2 3799999877 54221 11 123356799999995444544322 35
Q ss_pred EEEEcC---CCCCCcEEEeee---------c--CCceeeEE--EEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec
Q 004368 264 WLHKLE---ADQSNDICLYHE---------K--DDIYSLGL--QASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP 327 (758)
Q Consensus 264 ~~~~l~---~~~~~~~~v~~~---------~--~~~~~~~~--~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~ 327 (758)
.++++. ++. ....+.. + .......+ .+++|+++|+..+.+ ..|.++|+.+++....+..
T Consensus 136 ~vwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 136 IVLKVNHYQQES--EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL---SRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT---SEEEEEETTTCCEEEEEEC
T ss_pred EEEEeccccCCc--eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCeeeEEEcc
Confidence 555553 221 1111110 0 11222223 377899888765543 4588889988763333433
Q ss_pred --cccceee-EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEe----CCE-EEEEEEeCCe
Q 004368 328 --RVVGVDT-AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF----IDH-LAVYEREGGL 399 (758)
Q Consensus 328 --~~~~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~-l~~~~~~~g~ 399 (758)
....+.. .|+|+|+.|+..+.+ ..|..+|+... .....+.......+..+.+. .+. +++....++
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg- 283 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTR-----GIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT- 283 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETT-----SCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE-
T ss_pred CCCCCceEEEEECCCCCEEEEEcCC-----CeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC-
Confidence 2233333 489998877766543 35777787652 22122221223345566443 334 444554555
Q ss_pred eEEEEEEcCC
Q 004368 400 QKITTYRLPA 409 (758)
Q Consensus 400 ~~l~v~~l~~ 409 (758)
.+++|++..
T Consensus 284 -~i~iwd~~~ 292 (437)
T 3gre_A 284 -FLTIWNFVK 292 (437)
T ss_dssp -EEEEEETTT
T ss_pred -cEEEEEcCC
Confidence 478888873
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0008 Score=73.14 Aligned_cols=154 Identities=11% Similarity=0.094 Sum_probs=93.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCC-Cceee--------c-cccCcceeEEEecCC-eEEEEEeCCCCCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVG--------K-PLVGVTASVEWAGNE-ALVYITMDEILRP 260 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~-g~~~~--------~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~ 260 (758)
.+..+.|||||++|+-. + + ..|++||+.+ ++... . ........++|+||| .++++...+.
T Consensus 179 ~v~~~~~~~~~~~l~s~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg--- 249 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-D-D----LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG--- 249 (447)
T ss_dssp CCCEEEECTTSSEEEEE-C-S----SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS---
T ss_pred ceEEEEEcCCCCEEEEe-C-C----CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC---
Confidence 46678999999999865 2 3 3799999984 33322 1 112235679999998 7666665432
Q ss_pred ceEEEEEcCCCCCC--cEEEeeecCC-----------ceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCC-CCceEEee
Q 004368 261 DKAWLHKLEADQSN--DICLYHEKDD-----------IYSLGLQASESKKFLFIASESKITRFVFYLDVSK-PEELRVLT 326 (758)
Q Consensus 261 ~~v~~~~l~~~~~~--~~~v~~~~~~-----------~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~-~~~~~~l~ 326 (758)
.|.++++.++... ....+..... .....+.|+|||++|+..+. ..|.++|+.. +.....+.
T Consensus 250 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~v~iwd~~~~~~~~~~~~ 324 (447)
T 3dw8_B 250 -TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY----LSVKVWDLNMENRPVETYQ 324 (447)
T ss_dssp -CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES----SEEEEEETTCCSSCSCCEE
T ss_pred -eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC----CeEEEEeCCCCccccceee
Confidence 4788888766321 1334443322 13457889999999875433 4677788875 43222332
Q ss_pred ccccc----------------eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 327 PRVVG----------------VDTAASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 327 ~~~~~----------------~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
....- ....|+|+|+.|+.. ..+ ..|..+|+.+
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~-s~d----g~v~iwd~~~ 373 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTG-SYN----NFFRMFDRNT 373 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEE-CST----TEEEEEETTT
T ss_pred ccccccccccccccccccccceEEEECCCCCEEEEe-ccC----CEEEEEEcCC
Confidence 22110 114599999987433 322 4677777765
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0021 Score=67.03 Aligned_cols=198 Identities=12% Similarity=0.114 Sum_probs=102.6
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCc-------eeecccc---CcceeEEEecCCeEEEEEeCCCCCCc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT-------PVGKPLV---GVTASVEWAGNEALVYITMDEILRPD 261 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~-------~~~~~~~---~~~~~~~wspDg~l~y~~~~~~~~~~ 261 (758)
.+..+.|||||++||-... + ..|+|||+.++. ... .+. +....++|+|||.++++...+.
T Consensus 60 ~v~~v~~sp~~~~las~s~-D----~~v~iw~~~~~~~~~~~~~~~~-~~~~h~~~V~~v~~sp~g~~las~s~D~---- 129 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSF-D----STVSIWAKEESADRTFEMDLLA-IIEGHENEVKGVAWSNDGYYLATCSRDK---- 129 (330)
T ss_dssp CEEEEEECTTSSEEEEEET-T----SCEEEEEC-------CCCEEEE-EEC----CEEEEEECTTSCEEEEEETTS----
T ss_pred CEEEEEECCCCCEEEEEeC-C----CcEEEEEcccCcCccccceeEE-EEcCCCCcEEEEEECCCCCEEEEEeCCC----
Confidence 4778899999999886553 2 358899986432 111 222 2356689999995445544322
Q ss_pred eEEEEEcCCCCCCc--EEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC--ceEEeeccccceee-EE
Q 004368 262 KAWLHKLEADQSND--ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVGVDT-AA 336 (758)
Q Consensus 262 ~v~~~~l~~~~~~~--~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~~-~~ 336 (758)
.|.++++....... ...+... ......+.|+||+++|+..+. .+.-.|| |..++. ....+......+.. .|
T Consensus 130 ~v~iwd~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~-D~~i~iW--~~~~~~~~~~~~~~~h~~~v~~~~~ 205 (330)
T 2hes_X 130 SVWIWETDESGEEYECISVLQEH-SQDVKHVIWHPSEALLASSSY-DDTVRIW--KDYDDDWECVAVLNGHEGTVWSSDF 205 (330)
T ss_dssp CEEEEECCTTCCCCEEEEEECCC-SSCEEEEEECSSSSEEEEEET-TSCEEEE--EEETTEEEEEEEECCCSSCEEEEEE
T ss_pred EEEEEeccCCCCCeEEEEEeccC-CCceEEEEECCCCCEEEEEcC-CCeEEEE--ECCCCCeeEEEEccCCCCcEEEEEe
Confidence 37777874332111 2233332 233447889999998765443 3334444 444332 12333333333332 38
Q ss_pred eec--CCEEEEEEcCCCCCCcEEEEEeCCC-CCccee----eecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 337 SHR--GNHFFITRRSDELFNSELLACPVDN-TSETTV----LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 337 s~d--g~~l~~~s~~~~~~~~~L~~~~~~~-~~~~~~----l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+|+ +..|+..+.+. ..+|+.+.... .....+ .++......+..+.+..+.+++....++. +++|+..
T Consensus 206 ~~~~~~~~l~s~s~D~---~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~--v~iw~~~ 279 (330)
T 2hes_X 206 DKTEGVFRLCSGSDDS---TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGV--LAVYEEV 279 (330)
T ss_dssp CCSSSSCEEEEEETTS---CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSC--EEEEEEE
T ss_pred cCCCCeeEEEEEeCCC---eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCE--EEEEEcC
Confidence 887 44444333322 34555443211 011122 22221233456677766666666777775 6677765
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.1e-05 Score=83.74 Aligned_cols=111 Identities=11% Similarity=0.098 Sum_probs=66.5
Q ss_pred CCCCEEEEecCCCccC------CCCCCC----hHHHHHHHcCcEEEEEecCCCCCCchhHH------hcccccCCc----
Q 004368 514 GSDPLLLYGYGSYEIC------NDPAFN----SSRLSLLDRGFIFAIAQIRGGGELGRQWY------ENGKFLKKK---- 573 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~------~~~~~~----~~~~~l~~~G~~v~~~~~RG~g~~G~~~~------~~~~~~~~~---- 573 (758)
+..|.||++||..+.. ....|. .....|.++||.|+.+|+||.|.....-. ..+....+.
T Consensus 50 ~~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G~G~S~~~~~~l~~~i~~g~g~sg~~~~~ 129 (431)
T 2hih_A 50 KNKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSALASNHERAVELYYYLKGGRVDYGAAHSE 129 (431)
T ss_dssp SCSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHCEEEECCHHHHH
T ss_pred CCCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCCCCCCccchHHhhhhhhhccccccccccc
Confidence 3456788999976531 123343 46678888999999999999876421100 000000000
Q ss_pred -----ChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhh--------------------------CCCceeE
Q 004368 574 -----NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM--------------------------RPDLFKA 622 (758)
Q Consensus 574 -----~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~--------------------------~p~~f~a 622 (758)
.-.+|+.+.+ ++ .-..+++.++|||+||.++..++.. +|++++.
T Consensus 130 ~~~~~~~a~dl~~ll----~~-l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~s 204 (431)
T 2hih_A 130 KYGHERYGKTYEGVL----KD-WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTS 204 (431)
T ss_dssp HHTCCSEEEEECCSC----TT-CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEE
T ss_pred cCCHHHHHHHHHHHH----HH-hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeE
Confidence 0001111111 11 1113799999999999999887765 6889999
Q ss_pred EEEcCCc
Q 004368 623 AVAAVPF 629 (758)
Q Consensus 623 ~v~~~~~ 629 (758)
+|+.++.
T Consensus 205 lv~i~tP 211 (431)
T 2hih_A 205 ITTIATP 211 (431)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 8887663
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00032 Score=75.33 Aligned_cols=179 Identities=12% Similarity=0.143 Sum_probs=98.0
Q ss_pred ecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc----CcceeEEEecCCeEEEEEe
Q 004368 180 DENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV----GVTASVEWAGNEALVYITM 254 (758)
Q Consensus 180 D~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~----~~~~~~~wspDg~l~y~~~ 254 (758)
.+.++.+..|......+..+|||=+|...-+..|+....|.++|.+|++++.. ... .....+.|+||+.++|++.
T Consensus 127 e~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~ 206 (462)
T 2ece_A 127 EPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSE 206 (462)
T ss_dssp CHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECB
T ss_pred chhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEcc
Confidence 34444333344455667899999333333444555567899999999998753 222 1223478999997777763
Q ss_pred C-----------CC----CCCceEEEEEcCCCCCCcEEEeeec-CCceeeEE--EEcCCCcEEEEEec---CCcceEEEE
Q 004368 255 D-----------EI----LRPDKAWLHKLEADQSNDICLYHEK-DDIYSLGL--QASESKKFLFIASE---SKITRFVFY 313 (758)
Q Consensus 255 ~-----------~~----~~~~~v~~~~l~~~~~~~~~v~~~~-~~~~~~~~--~~S~Dg~~l~~~s~---~~~~~~l~~ 313 (758)
= .. ....+|..+++.+.. ....+.-. ....-..+ .++|||+++++... ....+.|++
T Consensus 207 wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v 284 (462)
T 2ece_A 207 WAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWL 284 (462)
T ss_dssp CCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEE
T ss_pred CcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEE
Confidence 0 00 235679999998652 22222221 11111223 45999999988665 112345554
Q ss_pred EeCCCCC-c-eEEe--ecc-----------------ccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 314 LDVSKPE-E-LRVL--TPR-----------------VVGVDTAASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 314 ~d~~~~~-~-~~~l--~~~-----------------~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
+..+++. . .+.+ ... .......+|+||++||+. |+. ...|..+++.+
T Consensus 285 ~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVS-nrg---~d~VavfdV~d 352 (462)
T 2ece_A 285 WFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLS-LWG---IGEVRQYDISN 352 (462)
T ss_dssp EEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEE-ETT---TTEEEEEECSS
T ss_pred EEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEE-eCC---CCEEEEEEecC
Confidence 4333333 1 1111 000 001223489999977765 554 24677777754
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0011 Score=68.02 Aligned_cols=185 Identities=10% Similarity=-0.010 Sum_probs=102.1
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc-----CcceeEEEecCCeEEEEEeCCC-------CC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-----GVTASVEWAGNEALVYITMDEI-------LR 259 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~-----~~~~~~~wspDg~l~y~~~~~~-------~~ 259 (758)
+..+.++|||++++- . . ..|+++|+++++.... ... .....++++|||++++...... ..
T Consensus 56 ~~~i~~~~dG~l~v~-~-~-----~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~ 128 (297)
T 3g4e_A 56 VSSVALRQSGGYVAT-I-G-----TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERH 128 (297)
T ss_dssp EEEEEEBTTSSEEEE-E-T-----TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTT
T ss_pred eEEEEECCCCCEEEE-E-C-----CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCC
Confidence 567899999995442 2 1 2589999998876543 111 1245588999998877664321 12
Q ss_pred CceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeC--CCCC--ceEEeeccc--cce-
Q 004368 260 PDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV--SKPE--ELRVLTPRV--VGV- 332 (758)
Q Consensus 260 ~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~--~~~~--~~~~l~~~~--~~~- 332 (758)
...||+++.+. +...+.... ...-++.|+|||+.|++.... ...|+++++ .++. ..+.+.... .+.
T Consensus 129 ~~~l~~~d~~g---~~~~~~~~~--~~pngi~~spdg~~lyv~~~~--~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p 201 (297)
T 3g4e_A 129 QGALYSLFPDH---HVKKYFDQV--DISNGLDWSLDHKIFYYIDSL--SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIP 201 (297)
T ss_dssp CEEEEEECTTS---CEEEEEEEE--SBEEEEEECTTSCEEEEEEGG--GTEEEEEEECTTTCCEEEEEEEEECCGGGCEE
T ss_pred CcEEEEEECCC---CEEEEeecc--ccccceEEcCCCCEEEEecCC--CCcEEEEeccCCCCcccCcEEEEECCCCCCCC
Confidence 34577766532 222233221 122367899999998775443 356777775 4554 112222111 111
Q ss_pred -eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC---CEEEEEEEeCC
Q 004368 333 -DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI---DHLAVYEREGG 398 (758)
Q Consensus 333 -~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~l~~~~~~~g 398 (758)
...++++| .||+....+ .+|++++.++......+..+. ..+..+.+.+ +.|+++....+
T Consensus 202 ~g~~~d~~G-~lwva~~~~----~~v~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 202 DGMCIDAEG-KLWVACYNG----GRVIRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYVTCARDG 264 (297)
T ss_dssp EEEEEBTTS-CEEEEEETT----TEEEEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEEEEBCTT
T ss_pred CeeEECCCC-CEEEEEcCC----CEEEEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEEEcCCcC
Confidence 12367777 477766543 479999876422222222121 1344555542 46776665544
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0044 Score=67.74 Aligned_cols=186 Identities=11% Similarity=0.015 Sum_probs=113.9
Q ss_pred EECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCC
Q 004368 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSN 274 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~ 274 (758)
.++|+|++|+..... | .|+++|+.+++.... . -......+.|+||+..+++...++ .|.++++.++ +
T Consensus 275 ~~~~~~~~l~~~~~d-~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg----~i~vwd~~~~--~ 343 (464)
T 3v7d_B 275 TVSGHGNIVVSGSYD-N----TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT----TIRIWDLENG--E 343 (464)
T ss_dssp EEEEETTEEEEEETT-S----CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS----CEEEEETTTT--E
T ss_pred EEcCCCCEEEEEeCC-C----eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCC--c
Confidence 458899998866542 3 599999999887653 1 123356689999994444544332 4888888765 3
Q ss_pred cEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce-eeEEeecCCEEEEEEcCCCCC
Q 004368 275 DICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSDELF 353 (758)
Q Consensus 275 ~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~ 353 (758)
....+.... .....+.++ +++|+..+.+ ..|.++|+.++. ........... ...++++|+.++..+ +
T Consensus 344 ~~~~~~~h~-~~v~~~~~~--~~~l~s~s~d---g~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~--d--- 411 (464)
T 3v7d_B 344 LMYTLQGHT-ALVGLLRLS--DKFLVSAAAD---GSIRGWDANDYS-RKFSYHHTNLSAITTFYVSDNILVSGS--E--- 411 (464)
T ss_dssp EEEEECCCS-SCEEEEEEC--SSEEEEEETT---SEEEEEETTTCC-EEEEEECTTCCCEEEEEECSSEEEEEE--T---
T ss_pred EEEEEeCCC-CcEEEEEEc--CCEEEEEeCC---CcEEEEECCCCc-eeeeecCCCCccEEEEEeCCCEEEEec--C---
Confidence 333343322 223345665 5676654433 347788888765 22222222222 234889998666544 3
Q ss_pred CcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEc
Q 004368 354 NSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 354 ~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l 407 (758)
..|...++.+......... .....+..+.+.++.+++...++|...++++++
T Consensus 412 -g~i~iwd~~~g~~~~~~~~-~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ldf 463 (464)
T 3v7d_B 412 -NQFNIYNLRSGKLVHANIL-KDADQIWSVNFKGKTLVAAVEKDGQSFLEILDF 463 (464)
T ss_dssp -TEEEEEETTTCCEEESCTT-TTCSEEEEEEEETTEEEEEEEETTEEEEEEEEC
T ss_pred -CeEEEEECCCCcEEehhhc-cCCCcEEEEEecCCEEEEEEEeCCeEEEEEeec
Confidence 3678888876322221122 224457788889999999999999877777764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0023 Score=66.56 Aligned_cols=192 Identities=8% Similarity=0.059 Sum_probs=106.8
Q ss_pred EEeeEEECCCCC-EEEEEEeCCCCeEEEEEEEEC-CCCceeecc---ccCcceeEEEecCCeEEEEEeCCCCCCceEEEE
Q 004368 192 SVGCFQVSPDNK-LVAYAEDTKGDEIYTVYVIDI-ETGTPVGKP---LVGVTASVEWAGNEALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 192 ~i~~~~~SPDG~-~lAy~~~~~G~e~~~l~v~dl-~~g~~~~~~---~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~ 266 (758)
.+..+.|+|||+ +|+.... +| .|++||+ .+++..... .......++|+| +.++++...+ ..|.++
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~-dg----~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d----~~i~iw 127 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTV-QG----EILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWD----GLIEVI 127 (342)
T ss_dssp CEEEEEEEESSSEEEEEEET-TS----CEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETT----SEEEEE
T ss_pred ceEEEEECCCCCcEEEEEcC-CC----eEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCC----CeEEEE
Confidence 467889999999 8876653 33 6999999 988775542 223356799999 7433444322 247777
Q ss_pred EcCC---------CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCC-CC-ceEEee-cccccee-
Q 004368 267 KLEA---------DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK-PE-ELRVLT-PRVVGVD- 333 (758)
Q Consensus 267 ~l~~---------~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~-~~-~~~~l~-~~~~~~~- 333 (758)
++.+ .. ....+. .......+.|++++ ++..+. ...|.++|+.+ +. ...... .....+.
T Consensus 128 d~~~~~~~~~~~~~~--~~~~~~--~~~~v~~~~~~~~~--l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 198 (342)
T 1yfq_A 128 DPRNYGDGVIAVKNL--NSNNTK--VKNKIFTMDTNSSR--LIVGMN---NSQVQWFRLPLCEDDNGTIEESGLKYQIRD 198 (342)
T ss_dssp CHHHHTTBCEEEEES--CSSSSS--SCCCEEEEEECSSE--EEEEES---TTEEEEEESSCCTTCCCEEEECSCSSCEEE
T ss_pred cccccccccccccCC--eeeEEe--eCCceEEEEecCCc--EEEEeC---CCeEEEEECCccccccceeeecCCCCceeE
Confidence 7654 21 111122 22233467899987 444332 23578888877 44 122222 2222233
Q ss_pred eEEee-cCCEEEEEEcCCCCCCcEEEEEeCCCC-----Cccee-eecCCC-------CceeeeEEEeCC-EEEEEEEeCC
Q 004368 334 TAASH-RGNHFFITRRSDELFNSELLACPVDNT-----SETTV-LIPHRE-------SVKLQDIQLFID-HLAVYEREGG 398 (758)
Q Consensus 334 ~~~s~-dg~~l~~~s~~~~~~~~~L~~~~~~~~-----~~~~~-l~~~~~-------~~~~~~~~~~~~-~l~~~~~~~g 398 (758)
..|+| +|+.++..+.. ..+..++++.. ..... +..+.. ...+..+.+..+ .++++...+|
T Consensus 199 i~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 273 (342)
T 1yfq_A 199 VALLPKEQEGYACSSID-----GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG 273 (342)
T ss_dssp EEECSGGGCEEEEEETT-----SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred EEECCCCCCEEEEEecC-----CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc
Confidence 34889 99877766553 34555555432 12222 322221 124556666543 3344555566
Q ss_pred eeEEEEEEcCC
Q 004368 399 LQKITTYRLPA 409 (758)
Q Consensus 399 ~~~l~v~~l~~ 409 (758)
. +.+|++..
T Consensus 274 ~--i~vwd~~~ 282 (342)
T 1yfq_A 274 I--ISCWNLQT 282 (342)
T ss_dssp C--EEEEETTT
T ss_pred e--EEEEcCcc
Confidence 4 77888873
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0096 Score=64.99 Aligned_cols=234 Identities=15% Similarity=0.095 Sum_probs=129.4
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEe--cCCeEEEEEeCCCCCCceEEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWA--GNEALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~ws--pDg~l~y~~~~~~~~~~~v~~~~ 267 (758)
.+..+.|+||+ +|+ +...+| +|++||+.+++.... . -......+.|+ +++.++++...+. .+.+++
T Consensus 164 ~V~~l~~~~~~-~l~-s~s~dg----~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~----~i~vwd 233 (464)
T 3v7d_B 164 GVWALKYAHGG-ILV-SGSTDR----TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN----TLHVWK 233 (464)
T ss_dssp CEEEEEECSTT-EEE-EEETTS----CEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTS----CEEEEE
T ss_pred CEEEEEEcCCC-EEE-EEeCCC----CEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCC----cEEEee
Confidence 46788999999 443 333344 699999999986643 1 12235557887 4665555554332 366677
Q ss_pred cCCCCCCcE---------------------EEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEee
Q 004368 268 LEADQSNDI---------------------CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT 326 (758)
Q Consensus 268 l~~~~~~~~---------------------~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~ 326 (758)
+.+...... ..+... .... ..+++++++|+..+.+ ..|.++|+.+++....+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v--~~~~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~ 307 (464)
T 3v7d_B 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH-MASV--RTVSGHGNIVVSGSYD---NTLIVWDVAQMKCLYILS 307 (464)
T ss_dssp CCCCCCC------CCSSEEESCGGGCTTEEEEECCC-SSCE--EEEEEETTEEEEEETT---SCEEEEETTTTEEEEEEC
T ss_pred CCCCcccccccccCCcceEeeccCCCeEEEEEccCc-cceE--EEEcCCCCEEEEEeCC---CeEEEEECCCCcEEEEec
Confidence 765532110 011111 1111 2357888888776543 347888988765233333
Q ss_pred cccccee-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEE
Q 004368 327 PRVVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTY 405 (758)
Q Consensus 327 ~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~ 405 (758)
.....+. ..++++|+.++..+.+ ..|...|+.+......+..+ ...+..+.+.++.+ ++...+|. +.+|
T Consensus 308 ~~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~l-~s~s~dg~--v~vw 377 (464)
T 3v7d_B 308 GHTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGELMYTLQGH--TALVGLLRLSDKFL-VSAAADGS--IRGW 377 (464)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTEEEEEECCC--SSCEEEEEECSSEE-EEEETTSE--EEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEeCC--CCcEEEEEEcCCEE-EEEeCCCc--EEEE
Confidence 3333333 3489999987765543 35777787652222223222 23456777776555 45556664 7789
Q ss_pred EcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 406 RLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 406 ~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
++.. +. ....+... ..+.....++++..+. +.+ -..+..+|+.+++
T Consensus 378 d~~~-~~--------~~~~~~~~-~~~~~~~~~~~~~~l~-~~~----dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 378 DAND-YS--------RKFSYHHT-NLSAITTFYVSDNILV-SGS----ENQFNIYNLRSGK 423 (464)
T ss_dssp ETTT-CC--------EEEEEECT-TCCCEEEEEECSSEEE-EEE----TTEEEEEETTTCC
T ss_pred ECCC-Cc--------eeeeecCC-CCccEEEEEeCCCEEE-Eec----CCeEEEEECCCCc
Confidence 8874 22 12222111 1122234455665443 332 2589999999987
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0032 Score=65.69 Aligned_cols=237 Identities=11% Similarity=0.035 Sum_probs=121.6
Q ss_pred CCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEe
Q 004368 201 DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLY 279 (758)
Q Consensus 201 DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~ 279 (758)
++++|..+...+ ..|.++|+++++.+.. ........+++++||++ |++... ...|+.+++.+... ....
T Consensus 52 ~~~~lyv~~~~~----~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~l-yv~~~~---~~~v~~iD~~t~~~--~~~i 121 (328)
T 3dsm_A 52 RDGIGWIVVNNS----HVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKA-YVTQIW---DYRIFIINPKTYEI--TGYI 121 (328)
T ss_dssp ETTEEEEEEGGG----TEEEEEETTTCCEEEEEECCSSEEEEEEEETTEE-EEEEBS---CSEEEEEETTTTEE--EEEE
T ss_pred ECCEEEEEEcCC----CEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeE-EEEECC---CCeEEEEECCCCeE--EEEE
Confidence 556654444432 3699999999988652 21222456899999965 444421 23688888876522 1112
Q ss_pred eecCC----ceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCC---
Q 004368 280 HEKDD----IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDEL--- 352 (758)
Q Consensus 280 ~~~~~----~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~--- 352 (758)
..... ..-.++.+ +++.|++... .....|+++|+++++..+.+.....-....++++|+ +|+.++.+..
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~-~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~ 197 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCW-SYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGGYEGSP 197 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEEC-TTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCBCTTCS
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcC-CCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-EEEEECCCccCCc
Confidence 21110 01123445 5667776532 124579999998876122222111112234788876 6666553200
Q ss_pred ---CCcEEEEEeCCCCCcceee-ecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeecc
Q 004368 353 ---FNSELLACPVDNTSETTVL-IPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFI 426 (758)
Q Consensus 353 ---~~~~L~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p 426 (758)
....|+++|.++......+ ++.. .....+.++ ++.+++. . + .+++++... ++ +.. ...+ +
T Consensus 198 ~~~~~~~v~~id~~t~~v~~~~~~~~g--~~p~~la~~~d~~~lyv~-~--~--~v~~~d~~t-~~-~~~---~~~~--~ 263 (328)
T 3dsm_A 198 YGYEAPSLYRIDAETFTVEKQFKFKLG--DWPSEVQLNGTRDTLYWI-N--N--DIWRMPVEA-DR-VPV---RPFL--E 263 (328)
T ss_dssp SCBCCCEEEEEETTTTEEEEEEECCTT--CCCEEEEECTTSCEEEEE-S--S--SEEEEETTC-SS-CCS---SCSB--C
T ss_pred cccCCceEEEEECCCCeEEEEEecCCC--CCceeEEEecCCCEEEEE-c--c--EEEEEECCC-Cc-eee---eeee--c
Confidence 0258999998753222122 2222 134566666 4555543 2 2 567777653 22 100 0001 1
Q ss_pred CcccccCCCCcccCCcEEEEEE-ecCCCCCEEEEEECCCCc
Q 004368 427 DPVYSIDPSESVFSSRILRFHY-SSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 427 ~~~~~i~~~~~~~d~~~l~~~~-sS~~~P~~i~~~d~~~~~ 466 (758)
.......++..+++++.++++- .++.....|+.+|.. ++
T Consensus 264 ~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 264 FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 1001112234556566665553 234556788899887 55
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00039 Score=75.89 Aligned_cols=200 Identities=13% Similarity=0.031 Sum_probs=107.5
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc-cCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+..+.|||||++|+.... + ..|++||+.+........ ...+..++|+|++ .++.+...+. .|.++++.+
T Consensus 212 ~~~~~~~~~~~~l~~g~~-d----g~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~----~v~iwd~~~ 282 (435)
T 4e54_B 212 FCSLDVSASSRMVVTGDN-V----GNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ----TVKIWDLRQ 282 (435)
T ss_dssp CCCEEEETTTTEEEEECS-S----SBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS----BCCEEETTT
T ss_pred EEEEEECCCCCEEEEEeC-C----CcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcc----eeeEEeccc
Confidence 456789999999986533 2 369999997765443322 2235669999999 6766655332 355667765
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc-------ceeeEEeecCCEE
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-------GVDTAASHRGNHF 343 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~-------~~~~~~s~dg~~l 343 (758)
.......+...........+.|+|||++|+..+.+ ..|.++|+.++.....+..... .+...|++++..+
T Consensus 283 ~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (435)
T 4e54_B 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK---SEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI 359 (435)
T ss_dssp CCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS---SCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCE
T ss_pred ccccceEEEeeeccccccceeECCCCCeeEEEcCC---CEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEE
Confidence 53322222222222334467899999998765543 3467778877652222222111 1123477777766
Q ss_pred EEEEcCCC-------CCCcEEEEEeCCCCCcceeeecCCCCceeee---EEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 344 FITRRSDE-------LFNSELLACPVDNTSETTVLIPHRESVKLQD---IQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 344 ~~~s~~~~-------~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
++....++ .....|..++..+......+.... ...+.. |++++..|+ .. .++ .|.||++..
T Consensus 360 ~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fspdg~~la-sg-~d~--~i~iW~~~~ 430 (435)
T 4e54_B 360 VVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNPMGDTLA-SA-MGY--HILIWSQQE 430 (435)
T ss_dssp EEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECTTSSCEE-EE-CSS--EEEECCCC-
T ss_pred EEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECCCCCEEE-EE-cCC--cEEEEECCc
Confidence 65543321 112346666765522222232222 112233 333444443 33 344 478888763
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.001 Score=71.95 Aligned_cols=75 Identities=16% Similarity=0.055 Sum_probs=48.2
Q ss_pred eEEECCCCCEEEEEEeC-----CCCeEEEEEEEECCCCceeec-ccc--------CcceeEEEecCCeEEEEEeCCCCCC
Q 004368 195 CFQVSPDNKLVAYAEDT-----KGDEIYTVYVIDIETGTPVGK-PLV--------GVTASVEWAGNEALVYITMDEILRP 260 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~-----~G~e~~~l~v~dl~~g~~~~~-~~~--------~~~~~~~wspDg~l~y~~~~~~~~~ 260 (758)
.+.+||||++|..+... .|.....|.++|+.+++.... .+. ....++++||||+.+|+.... ..
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~--~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS--PA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS--SS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC--CC
Confidence 67999999998665431 122245799999999988653 332 123458999999655665421 12
Q ss_pred ceEEEEEcCCC
Q 004368 261 DKAWLHKLEAD 271 (758)
Q Consensus 261 ~~v~~~~l~~~ 271 (758)
..|..+++.+.
T Consensus 200 ~~VsVID~~t~ 210 (426)
T 3c75_H 200 PAVGVVDLEGK 210 (426)
T ss_dssp CEEEEEETTTT
T ss_pred CeEEEEECCCC
Confidence 34666666654
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=97.77 E-value=8.9e-05 Score=78.97 Aligned_cols=100 Identities=11% Similarity=0.029 Sum_probs=62.2
Q ss_pred CCEEEEecCCCccCCC-----CCCC----hHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHH-
Q 004368 516 DPLLLYGYGSYEICND-----PAFN----SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEY- 585 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~-----~~~~----~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~- 585 (758)
.|.||++||..+.... ..|. .....|.++||.|+.+|+||.|... ..+ .++.+.++.
T Consensus 6 ~~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g~G~s~---~~a----------~~l~~~i~~~ 72 (387)
T 2dsn_A 6 DAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNW---DRA----------CEAYAQLVGG 72 (387)
T ss_dssp CCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCSSBCHH---HHH----------HHHHHHHHCE
T ss_pred CCcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCCCCCcc---ccH----------HHHHHHHHhh
Confidence 4558889997654321 2243 2347788899999999999976431 110 122222210
Q ss_pred -------HHHc-----------C----CCCCCcEEEEEeChhHHHHHHHHhh-------------------CC------C
Q 004368 586 -------LIKN-----------C----YCTKEKLCIEGRSAGGLLIGAVLNM-------------------RP------D 618 (758)
Q Consensus 586 -------l~~~-----------~----~~d~~~i~i~G~S~GG~l~~~~~~~-------------------~p------~ 618 (758)
+.+. . ....+++.++||||||.++..++.+ +| +
T Consensus 73 ~vDy~~~~a~~~~~~~~~~~l~~ll~~~~~~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~~ 152 (387)
T 2dsn_A 73 TVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGHH 152 (387)
T ss_dssp EEECCHHHHHHHTSCSEEEEECCSCGGGGTTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCC
T ss_pred hhhhhhhhhhhccchhhhhhHHHHHHHhcCCCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCcccccccc
Confidence 1100 0 1234799999999999999888862 35 6
Q ss_pred ceeEEEEcCC
Q 004368 619 LFKAAVAAVP 628 (758)
Q Consensus 619 ~f~a~v~~~~ 628 (758)
+++.+|..++
T Consensus 153 ~V~sLV~i~t 162 (387)
T 2dsn_A 153 FVLSVTTIAT 162 (387)
T ss_dssp CEEEEEEESC
T ss_pred ceeEEEEECC
Confidence 7888887664
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.018 Score=61.72 Aligned_cols=142 Identities=11% Similarity=0.108 Sum_probs=80.5
Q ss_pred C--CCCCEEEEEEeCCCCeEEEEEEEECCCC----ceeecccc--------Cc--ceeEEEecCCeEEEEEe--CCCCCC
Q 004368 199 S--PDNKLVAYAEDTKGDEIYTVYVIDIETG----TPVGKPLV--------GV--TASVEWAGNEALVYITM--DEILRP 260 (758)
Q Consensus 199 S--PDG~~lAy~~~~~G~e~~~l~v~dl~~g----~~~~~~~~--------~~--~~~~~wspDg~l~y~~~--~~~~~~ 260 (758)
| +|+++|....-.+ ..|+|+|+++. +... +++ +. -..+.-+||| |+.+.. ..++.+
T Consensus 90 ~~~~~r~~l~v~~l~s----~~I~viD~~t~p~~p~~~k-~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 90 KPNIERRFLIVPGLRS----SRIYIIDTKPNPREPKIIK-VIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGP 163 (462)
T ss_dssp CTTCCSCEEEEEBTTT----CCEEEEECCSCTTSCEEEE-EECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred CCCccCCEEEEccCCC----CeEEEEECCCCCCCceeee-eechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence 7 8999986544332 47999999865 2222 331 11 1224678999 444333 223445
Q ss_pred ceEEEEEcCCCCCCcEEEeee--cCCceeeEEEEcCCCcEEEEEecC----------------CcceEEEEEeCCCCCce
Q 004368 261 DKAWLHKLEADQSNDICLYHE--KDDIYSLGLQASESKKFLFIASES----------------KITRFVFYLDVSKPEEL 322 (758)
Q Consensus 261 ~~v~~~~l~~~~~~~~~v~~~--~~~~~~~~~~~S~Dg~~l~~~s~~----------------~~~~~l~~~d~~~~~~~ 322 (758)
..+.+.+..+.+ -+-.++. ....+..++.|+||++.++.+... ....+|.++|+++++..
T Consensus 164 g~v~vlD~~T~~--v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 164 GGILMLDHYSFE--PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp CEEEEECTTTCC--EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred CeEEEEECCCCe--EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 678888877663 2223331 122334457899999976554210 23578999999876522
Q ss_pred EEeeccccce---e--eEEeecCCEEEEEEc
Q 004368 323 RVLTPRVVGV---D--TAASHRGNHFFITRR 348 (758)
Q Consensus 323 ~~l~~~~~~~---~--~~~s~dg~~l~~~s~ 348 (758)
+.+.-...+. + ..++|+|+++|+...
T Consensus 242 ~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e 272 (462)
T 2ece_A 242 HSLTLGEENRMALELRPLHDPTKLMGFINMV 272 (462)
T ss_dssp EEEESCTTEEEEEEEEECSSTTCCEEEEEEE
T ss_pred eEEecCCCCCccceeEeeECCCCCEEEEEEe
Confidence 2232221121 1 225999998887765
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0034 Score=64.32 Aligned_cols=201 Identities=11% Similarity=0.082 Sum_probs=100.7
Q ss_pred EEeeEEECCC--CCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc---cCcceeEEEecC--CeEEEEEeCCCCCCceE
Q 004368 192 SVGCFQVSPD--NKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL---VGVTASVEWAGN--EALVYITMDEILRPDKA 263 (758)
Q Consensus 192 ~i~~~~~SPD--G~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~---~~~~~~~~wspD--g~l~y~~~~~~~~~~~v 263 (758)
.+..+.|||+ |++||-... + .+|+|||+.+++.... .+ ......++|+|+ |.++.+...+ ..|
T Consensus 55 ~V~~v~~s~~~~g~~l~s~s~-D----~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d----~~v 125 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILASCSY-D----GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD----GKV 125 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEET-T----TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT----SEE
T ss_pred CeEEEEecCCCcCCEEEEEcC-C----CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC----CcE
Confidence 4677899874 888775443 3 3699999998753221 22 223566999998 6444554433 247
Q ss_pred EEEEcCCCCCCcEEEeeecCCceeeEEEEcCC-------------CcEEEEEecCCcceEEEEEeCCCCC-ce---EEee
Q 004368 264 WLHKLEADQSNDICLYHEKDDIYSLGLQASES-------------KKFLFIASESKITRFVFYLDVSKPE-EL---RVLT 326 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~D-------------g~~l~~~s~~~~~~~l~~~d~~~~~-~~---~~l~ 326 (758)
.++++.+........+... ......+.|+|+ +++|+.. ...+.-.|| |+.++. .. ..+.
T Consensus 126 ~~wd~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sg-s~D~~v~lw--d~~~~~~~~~~~~~l~ 201 (297)
T 2pm7_B 126 SVVEFKENGTTSPIIIDAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIW--KYNSDAQTYVLESTLE 201 (297)
T ss_dssp EEEEBCSSSCBCCEEEECC-SSCEEEEEECCCC------------CCEEEEE-ETTSCEEEE--EEETTTTEEEEEEEEC
T ss_pred EEEEecCCCceeeeeeecc-cCccceEeecCCcccccccCCCCCCcceEEEE-cCCCcEEEE--EEcCCCceEEEEEEec
Confidence 7778765422122333322 223346789987 4555543 333344444 544432 11 2232
Q ss_pred cccccee-eEEeecC--CEEEEEEcCCCCCCcEEEEEeCCCCC-c-ceeeec-CCCCceeeeEEEeCC-EEEEEEEeCCe
Q 004368 327 PRVVGVD-TAASHRG--NHFFITRRSDELFNSELLACPVDNTS-E-TTVLIP-HRESVKLQDIQLFID-HLAVYEREGGL 399 (758)
Q Consensus 327 ~~~~~~~-~~~s~dg--~~l~~~s~~~~~~~~~L~~~~~~~~~-~-~~~l~~-~~~~~~~~~~~~~~~-~l~~~~~~~g~ 399 (758)
.....+. ..|+|++ ..+++....+ ..|...+++... . ...++. ......+..+++..+ .+++....++.
T Consensus 202 ~H~~~V~~v~~sp~~~~~~~las~s~D----~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~ 277 (297)
T 2pm7_B 202 GHSDWVRDVAWSPTVLLRSYMASVSQD----RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (297)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETT----SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred CCCCceEEEEECCCCCCceEEEEEECC----CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence 2333333 3489986 3343333333 234444544321 1 111221 122223445555543 23344555664
Q ss_pred eEEEEEEcCCCC
Q 004368 400 QKITTYRLPAVG 411 (758)
Q Consensus 400 ~~l~v~~l~~~g 411 (758)
+++|+....|
T Consensus 278 --v~lw~~~~~g 287 (297)
T 2pm7_B 278 --VTLWKENLEG 287 (297)
T ss_dssp --EEEEEECTTS
T ss_pred --EEEEEECCCC
Confidence 6677766434
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.019 Score=57.21 Aligned_cols=214 Identities=12% Similarity=0.137 Sum_probs=124.0
Q ss_pred CceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCc--ceeEEEecCCeEE
Q 004368 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV--TASVEWAGNEALV 250 (758)
Q Consensus 174 ~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~--~~~~~wspDg~l~ 250 (758)
.-++.++.-.+..-.+ .++++++.||++.|..+.+.. ..|+.+|++ |+.++. .+.+. ..++++.++|.++
T Consensus 12 ~y~~~~~~~~l~g~~~--~lSGla~~~~~~~L~aV~d~~----~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~ 84 (255)
T 3qqz_A 12 NYHATIDGKEIAGITN--NISSLTWSAQSNTLFSTINKP----AAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFV 84 (255)
T ss_dssp TCEEEEEEEECTTCCS--CEEEEEEETTTTEEEEEEETT----EEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEE
T ss_pred ceEEEEeceECCCccc--CcceeEEeCCCCEEEEEECCC----CeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEE
Confidence 4466666444432212 488999999999887777753 479999998 666543 44432 5668998888644
Q ss_pred EEEeCCCCCCceEEEEEcCCCCCCc-EEEee------ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEe--CCCCCc
Q 004368 251 YITMDEILRPDKAWLHKLEADQSND-ICLYH------EKDDIYSLGLQASESKKFLFIASESKITRFVFYLD--VSKPEE 321 (758)
Q Consensus 251 y~~~~~~~~~~~v~~~~l~~~~~~~-~~v~~------~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d--~~~~~~ 321 (758)
++... ..+++.++++....-. ..... ..+.. +-+++|+|+++.|++... +....||.++ +.+..
T Consensus 85 -vs~E~---~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g-~EGLA~d~~~~~L~va~E-~~p~~i~~~~g~~~~~~- 157 (255)
T 3qqz_A 85 -ISDER---DYAIYVISLTPNSEVKILKKIKIPLQESPTNCG-FEGLAYSRQDHTFWFFKE-KNPIEVYKVNGLLSSNE- 157 (255)
T ss_dssp -EEETT---TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSC-CEEEEEETTTTEEEEEEE-SSSEEEEEEESTTCSSC-
T ss_pred -EEECC---CCcEEEEEcCCCCeeeeeeeeccccccccccCC-cceEEEeCCCCEEEEEEC-cCCceEEEEcccccCCc-
Confidence 44332 2568888887653201 11111 01112 247899999988887544 3455788888 22222
Q ss_pred eEEeec-------cccce-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCC------CCceeeeEEEeC
Q 004368 322 LRVLTP-------RVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHR------ESVKLQDIQLFI 387 (758)
Q Consensus 322 ~~~l~~-------~~~~~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~ 387 (758)
++.+.. ...+. ...+.|..++||+++... ..|+.+|.++.-.....+... .-...++++++.
T Consensus 158 l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s----~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~ 233 (255)
T 3qqz_A 158 LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHES----RALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDA 233 (255)
T ss_dssp CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTT----TEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECT
T ss_pred eeeecchhhccccccCCceeEEEcCCCCeEEEEECCC----CeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECC
Confidence 333211 01111 223788888999998865 578888876521111222211 123578899887
Q ss_pred CEEEEEEEeCCeeEEEEEEc
Q 004368 388 DHLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 388 ~~l~~~~~~~g~~~l~v~~l 407 (758)
+.-+++.++.. .+++++.
T Consensus 234 ~G~lyIvsE~n--~~y~f~~ 251 (255)
T 3qqz_A 234 SGNIYIVSEPN--RFYRFTP 251 (255)
T ss_dssp TCCEEEEETTT--EEEEEEC
T ss_pred CCCEEEEcCCc--eEEEEEe
Confidence 65444444443 4666643
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0034 Score=65.73 Aligned_cols=190 Identities=12% Similarity=0.121 Sum_probs=101.2
Q ss_pred EECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc--CcceeEEEec--CCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV--GVTASVEWAG--NEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~--~~~~~~~wsp--Dg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
.-|.||....|..+ + .+.++|+.+++.... ... +....++|+| ++.++.+...+. .+.++++.++
T Consensus 90 s~s~D~~i~~w~~~--~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg----~i~~wd~~~~ 159 (343)
T 3lrv_A 90 SRGPCNRLLLLYPG--N----QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRG----TIGFQSYEDD 159 (343)
T ss_dssp EECSTTEEEEEETT--T----EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTC----CEEEEESSSS
T ss_pred EecCCCeEEEEEcc--C----ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCC----cEEEEECCCC
Confidence 34555554444322 1 456677778775432 222 3356689999 885555544332 4888888776
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCce-EEeec-cccceee-EEeecCCEEEEEEc
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL-RVLTP-RVVGVDT-AASHRGNHFFITRR 348 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~-~~l~~-~~~~~~~-~~s~dg~~l~~~s~ 348 (758)
. ...++..........+.|+|||++|+..+.+ ..|.++|+.+++.. ..+.. ....+.. .|+|+|..|+..+
T Consensus 160 ~--~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~- 233 (343)
T 3lrv_A 160 S--QYIVHSAKSDVEYSSGVLHKDSLLLALYSPD---GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC- 233 (343)
T ss_dssp C--EEEEECCCSSCCCCEEEECTTSCEEEEECTT---SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-
T ss_pred c--EEEEEecCCCCceEEEEECCCCCEEEEEcCC---CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-
Confidence 3 3333322222224468899999988764433 35788898877622 34443 3333333 4899999877665
Q ss_pred CCCCCCcEEEEEeCCCCCcceeeecC-CCCceee--eEEEeC--CEEEEEEEeCCeeEEEEEEcCC
Q 004368 349 SDELFNSELLACPVDNTSETTVLIPH-RESVKLQ--DIQLFI--DHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l~~~-~~~~~~~--~~~~~~--~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+ . .|...|+........+.+. .....+. .+++.. ..++.....++ .+.+|+++.
T Consensus 234 -~-~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~--~i~v~~~~~ 292 (343)
T 3lrv_A 234 -D-Q---TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN--SLTIYKFDK 292 (343)
T ss_dssp -S-S---BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTT--EEEEEEECT
T ss_pred -C-C---eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCC--cEEEEEEcc
Confidence 2 1 5777787653221111110 0111121 255554 44443322244 477888763
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0013 Score=78.89 Aligned_cols=193 Identities=10% Similarity=0.051 Sum_probs=111.7
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
.+..++|||||++||..... .+|+|||..+++.... .-...+..++|+| |+++++...+ ..|.++++.+
T Consensus 19 ~V~~lafspdg~~lAsgs~D-----g~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D----~~v~lWd~~~ 88 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVT-----GEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAK----DTVYVLSLYS 88 (902)
T ss_dssp CEEEEEEETTTTEEEEEETT-----SEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETT----CEEEEEETTT
T ss_pred CcEEEEECCCCCEEEEEeCC-----CEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECc----CeEEEEECCC
Confidence 46788999999999976542 3699999988765432 1122356799999 7433444322 2588888877
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEe------------ecccccee-eEEe
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL------------TPRVVGVD-TAAS 337 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l------------~~~~~~~~-~~~s 337 (758)
+ +....+.. ......+.|+|||++|+..+.+ ..|.++|+.++. .... ......+. ..|+
T Consensus 89 ~--~~~~~~~~--~~~V~~v~~sp~g~~l~sgs~d---g~V~lwd~~~~~-~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 89 Q--KVLTTVFV--PGKITSIDTDASLDWMLIGLQN---GSMIVYDIDRDQ-LSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp C--SEEEEEEC--SSCEEEEECCTTCSEEEEEETT---SCEEEEETTTTE-EEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred C--cEEEEEcC--CCCEEEEEECCCCCEEEEEcCC---CcEEEEECCCCc-cccceeccccccccccccCCCCeEEEEEc
Confidence 6 23333332 2234568899999998876543 347778887765 2211 01111222 3488
Q ss_pred ecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecC----------------CCCceeeeEEEeCC-EEEEEEEeCCee
Q 004368 338 HRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPH----------------RESVKLQDIQLFID-HLAVYEREGGLQ 400 (758)
Q Consensus 338 ~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~----------------~~~~~~~~~~~~~~-~l~~~~~~~g~~ 400 (758)
|++..+++....+ ..+ .+|+.+......+..+ .....+..+.+..+ ..+++...++.
T Consensus 161 p~~~~~l~~g~~d----g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~- 234 (902)
T 2oaj_A 161 PRDIGTVLISYEY----VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS- 234 (902)
T ss_dssp TTEEEEEEEECSS----CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-
T ss_pred cCCCCEEEEEeCC----CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-
Confidence 8654444444433 457 7888653211112211 00123556666543 33445566664
Q ss_pred EEEEEEcCC
Q 004368 401 KITTYRLPA 409 (758)
Q Consensus 401 ~l~v~~l~~ 409 (758)
+++|++..
T Consensus 235 -i~lWd~~~ 242 (902)
T 2oaj_A 235 -LVFWDANS 242 (902)
T ss_dssp -EEEEETTT
T ss_pred -EEEEECCC
Confidence 77888864
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0066 Score=63.43 Aligned_cols=111 Identities=12% Similarity=0.062 Sum_probs=67.1
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEE--ecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEW--AGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~w--spDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+..+.|||||++|+.... +| .|++||+.+++.... ........+.| +||+.++++...+. .|.++++
T Consensus 88 ~v~~~~~~~~~~~l~s~~~-dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~i~vwd~ 158 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASC-DK----TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDK----TLKFWDT 158 (368)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTS----EEEEECS
T ss_pred CEEEEEECcCCCEEEEEcC-CC----cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCC----cEEEEEC
Confidence 4678899999999985543 33 799999999987654 22334566899 88886555554332 4888888
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
.++. ....+..... ...+.++. ..+++...+ ..+.++++....
T Consensus 159 ~~~~--~~~~~~~~~~--~~~~~~~~--~~~~~~~~~---~~i~~~~~~~~~ 201 (368)
T 3mmy_A 159 RSSN--PMMVLQLPER--CYCADVIY--PMAVVATAE---RGLIVYQLENQP 201 (368)
T ss_dssp SCSS--CSEEEECSSC--EEEEEEET--TEEEEEEGG---GCEEEEECSSSC
T ss_pred CCCc--EEEEEecCCC--ceEEEecC--CeeEEEeCC---CcEEEEEecccc
Confidence 7763 2333333222 22333443 344443332 235666666543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0048 Score=66.88 Aligned_cols=197 Identities=10% Similarity=0.074 Sum_probs=108.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECC---CCceeec-c-------------ccCcceeE--EEecCCeEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE---TGTPVGK-P-------------LVGVTASV--EWAGNEALVYI 252 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~---~g~~~~~-~-------------~~~~~~~~--~wspDg~l~y~ 252 (758)
.+..+.|+|||++|+.... +| .|++||+. +++.... . .......+ .|++|+.++++
T Consensus 113 ~v~~~~~~~~~~~l~s~s~-dg----~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 113 TVTQITMIPNFDAFAVSSK-DG----QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred CEEEEEEeCCCCEEEEEeC-CC----EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 4778899999999886553 23 68888884 4544321 0 01111222 26678854455
Q ss_pred EeCCCCCCceEEEEEcCCCCCCcEEEeeec-CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEee-cccc
Q 004368 253 TMDEILRPDKAWLHKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-PRVV 330 (758)
Q Consensus 253 ~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~-~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~-~~~~ 330 (758)
...+ ..|.++++.++ +....+... .......+.|+||+++|+..+.+ ..|.++|+.++.....+. ....
T Consensus 188 ~~~d----~~i~iwd~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~ 258 (437)
T 3gre_A 188 LTNL----SRVIIFDIRTL--ERLQIIENSPRHGAVSSICIDEECCVLILGTTR---GIIDIWDIRFNVLIRSWSFGDHA 258 (437)
T ss_dssp EETT----SEEEEEETTTC--CEEEEEECCGGGCCEEEEEECTTSCEEEEEETT---SCEEEEETTTTEEEEEEBCTTCE
T ss_pred EeCC----CeEEEEeCCCC--eeeEEEccCCCCCceEEEEECCCCCEEEEEcCC---CeEEEEEcCCccEEEEEecCCCC
Confidence 4432 25888898776 333444431 22334578899999998876544 347788887765222222 2222
Q ss_pred ceee-E----EeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCC------------------------CCceee
Q 004368 331 GVDT-A----ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHR------------------------ESVKLQ 381 (758)
Q Consensus 331 ~~~~-~----~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~------------------------~~~~~~ 381 (758)
.+.. . +++++..| +....+ ..|..+|+.+......+..+. ....+.
T Consensus 259 ~v~~~~~~~~~s~~~~~l-~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 333 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIV-VGGSSK----TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS 333 (437)
T ss_dssp EEEEEEECTTTCTTEEEE-EEESTT----EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred ceEEEEeccccCCCccEE-EEEcCC----CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceE
Confidence 2222 1 33444433 333332 567777876422111122111 122245
Q ss_pred eEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 382 DIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 382 ~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
.+.+.++.+++....++. |++|++..
T Consensus 334 ~l~~~~~~~l~s~~~d~~--i~~wd~~~ 359 (437)
T 3gre_A 334 TISVSNDKILLTDEATSS--IVMFSLNE 359 (437)
T ss_dssp CEEEETTEEEEEEGGGTE--EEEEETTC
T ss_pred EEEECCceEEEecCCCCe--EEEEECCC
Confidence 566666677777777774 78899873
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.018 Score=61.51 Aligned_cols=194 Identities=9% Similarity=0.053 Sum_probs=117.5
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC--cceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
..++.|.+++..|.|+ |..+ ..|+.++++++........+ ...++++.+.+ .||++-.. ...|++.++.
T Consensus 118 ~~gl~~d~~~~~ly~~-D~~~---~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~----~~~I~~~~~d 189 (386)
T 3v65_B 118 AIALDFHHRRELVFWS-DVTL---DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG----TSRIEVANLD 189 (386)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETT----TTEEEECBTT
T ss_pred cEEEEEecCCCeEEEE-eCCC---CcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCC----CCeEEEEeCC
Confidence 4578999988887554 4433 36899999887654432122 23458888776 67665432 2357777775
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-ccc-eeeEEeecCCEEEEEE
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHFFITR 347 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-~~~-~~~~~s~dg~~l~~~s 347 (758)
+. ....+.... ...-.++++.|++.+|+++... ....|+++++++.. .+.+... ... ....+++++++||+.-
T Consensus 190 g~--~~~~l~~~~-l~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 190 GA--HRKVLLWQS-LEKPRAIALHPMEGTIYWTDWG-NTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp SC--SCEEEECSS-CSCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEE
T ss_pred CC--ceEEeecCC-CCCCcEEEEEcCCCeEEEeccC-CCCEEEEEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEE
Confidence 44 223333221 1222367788988888886433 24789999998765 4444322 111 1234888899998874
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEc
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l 407 (758)
.. +.+|+++++++. ..+.++... .....++.++++.++++...++ .|..++.
T Consensus 265 ~~----~~~I~~~d~dG~-~~~~~~~~~-~~~P~giav~~~~ly~td~~~~--~V~~~~~ 316 (386)
T 3v65_B 265 AK----HHVIERANLDGS-HRKAVISQG-LPHPFAITVFEDSLYWTDWHTK--SINSANK 316 (386)
T ss_dssp TT----TTEEEEECTTSC-SCEEEECSS-CSSEEEEEEETTEEEEEETTTT--EEEEEET
T ss_pred CC----CCEEEEEeCCCC-eeEEEEECC-CCCceEEEEECCEEEEeeCCCC--eEEEEEC
Confidence 33 468999998762 233344333 2245678888888887654433 4666653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0015 Score=67.68 Aligned_cols=115 Identities=14% Similarity=0.041 Sum_probs=66.6
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc---CcceeEEEecC--CeEEEEEeCCCCCCceEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV---GVTASVEWAGN--EALVYITMDEILRPDKAWL 265 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~---~~~~~~~wspD--g~l~y~~~~~~~~~~~v~~ 265 (758)
.+..++|||||++||-... ...|+|||+.+++.... .+. +.+..++|+|+ |.++++...+. .|.+
T Consensus 15 ~V~~v~~s~~g~~lasgs~-----D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~----~v~i 85 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSS-----DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR----KVII 85 (316)
T ss_dssp CEEEEEECGGGCEEEEEET-----TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS----CEEE
T ss_pred eEEEeeEcCCCCEEEEEeC-----CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC----EEEE
Confidence 3677899999999985543 24799999988753221 232 23566899864 65545554322 3777
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCC--CcEEEEEecCCcceEEEEEeCCCC
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASES--KKFLFIASESKITRFVFYLDVSKP 319 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~D--g~~l~~~s~~~~~~~l~~~d~~~~ 319 (758)
+++.++..+....+... ......+.|+|| |.+|+..+. .+. |.++|+.++
T Consensus 86 Wd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~g~~lasgs~-D~~--i~lwd~~~~ 137 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGH-DSSVNSVCWAPHDYGLILACGSS-DGA--ISLLTYTGE 137 (316)
T ss_dssp ECCSSSCCCEEEEECCC-SSCCCEEEECCTTTCSCEEEECS-SSC--EEEEEECSS
T ss_pred EECCCCcceEEEEccCC-CCceEEEEECCCCCCcEEEEEcC-CCC--EEEEecCCC
Confidence 77766532222233222 223346889998 666654333 333 445555543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0018 Score=69.20 Aligned_cols=194 Identities=10% Similarity=0.087 Sum_probs=103.9
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceee------cccc---CcceeEEEecCC-eEEEEEeCCCCCCce
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG------KPLV---GVTASVEWAGNE-ALVYITMDEILRPDK 262 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~------~~~~---~~~~~~~wspDg-~l~y~~~~~~~~~~~ 262 (758)
+....|||||++||-.. ....+.+||+.++.... ..+. +....+.|+|++ ..+++...+ ..
T Consensus 111 v~~~~~s~~g~~las~~-----~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D----~~ 181 (380)
T 3iz6_a 111 VMECAFAPNGQSVACGG-----LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD----QT 181 (380)
T ss_dssp CCCCEECTTSSEEEECC-----SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTT----SC
T ss_pred EEEEEECCCCCEEEEee-----CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCC----Cc
Confidence 45678999999998533 23568899987643211 0122 224557899987 544554432 24
Q ss_pred EEEEEcCCCCCCcEEEeee----cCCceeeEEEEcC-CCcEEEEEecCCcceEEEEEeCCCC-CceEEeeccccceee-E
Q 004368 263 AWLHKLEADQSNDICLYHE----KDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKP-EELRVLTPRVVGVDT-A 335 (758)
Q Consensus 263 v~~~~l~~~~~~~~~v~~~----~~~~~~~~~~~S~-Dg~~l~~~s~~~~~~~l~~~d~~~~-~~~~~l~~~~~~~~~-~ 335 (758)
+.++++.++. ....+.. ........+.+++ ++..|+..+.+ + .|.++|+... ...+.+......+.. .
T Consensus 182 i~~wd~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D-~--~v~~wd~~~~~~~~~~~~~h~~~v~~v~ 256 (380)
T 3iz6_a 182 CVLWDVTTGQ--RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD-T--TVRLWDLRITSRAVRTYHGHEGDINSVK 256 (380)
T ss_dssp EEEECTTTCC--EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT-S--CEEEEETTTTCCCCEEECCCSSCCCEEE
T ss_pred EEEEEcCCCc--EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC-C--eEEEEECCCCCcceEEECCcCCCeEEEE
Confidence 7778887763 3333321 1222344567766 77766543332 2 3666777633 234444444444433 4
Q ss_pred EeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCC------ceeeeEEE--eCCEEEEEEEeCCeeEEEEEEc
Q 004368 336 ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRES------VKLQDIQL--FIDHLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 336 ~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~------~~~~~~~~--~~~~l~~~~~~~g~~~l~v~~l 407 (758)
|+|+|+.|+..+.+ ..|...|+.+.. ....+..... ..+..+.+ ++..++ ....+|. +++|++
T Consensus 257 ~~p~~~~l~s~s~D-----~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~dg~--i~vwd~ 327 (380)
T 3iz6_a 257 FFPDGQRFGTGSDD-----GTCRLFDMRTGH-QLQVYNREPDRNDNELPIVTSVAFSISGRLLF-AGYSNGD--CYVWDT 327 (380)
T ss_dssp ECTTSSEEEEECSS-----SCEEEEETTTTE-EEEEECCCCSSSCCSSCSCSEEEECSSSSEEE-EECTTSC--EEEEET
T ss_pred EecCCCeEEEEcCC-----CeEEEEECCCCc-EEEEecccccccccccCceEEEEECCCCCEEE-EEECCCC--EEEEEC
Confidence 89999976654332 346677776522 1112211111 11334444 444444 4455554 778887
Q ss_pred CC
Q 004368 408 PA 409 (758)
Q Consensus 408 ~~ 409 (758)
..
T Consensus 328 ~~ 329 (380)
T 3iz6_a 328 LL 329 (380)
T ss_dssp TT
T ss_pred CC
Confidence 63
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0024 Score=66.31 Aligned_cols=149 Identities=9% Similarity=0.001 Sum_probs=74.9
Q ss_pred EEeeEEECCCCCEEE-------------EEEeC-------CCCeEEEEEEEECCCCceeeccccC------cceeEEEec
Q 004368 192 SVGCFQVSPDNKLVA-------------YAEDT-------KGDEIYTVYVIDIETGTPVGKPLVG------VTASVEWAG 245 (758)
Q Consensus 192 ~i~~~~~SPDG~~lA-------------y~~~~-------~G~e~~~l~v~dl~~g~~~~~~~~~------~~~~~~wsp 245 (758)
.+..+.+||||+.++ |+.-. .|+...+|+|||+++|+.+.. +.+ ....++|||
T Consensus 158 ~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~t-L~g~~~~v~~v~~vafSp 236 (356)
T 2w18_A 158 QVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKK-MHIDDSYQASVCHKAYSE 236 (356)
T ss_dssp EEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEE-EECCC---CCCEEEEEEE
T ss_pred cEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEE-EcCCCcceeeeEEEEECC
Confidence 355667788887743 43311 134457899999999987652 221 123458999
Q ss_pred CCe-EEEEEeCC-------CCCCceEEEEEcCCCCCCcEEEe----eecCCceeeEEEEcCCCcEEEEEecCCcceEEEE
Q 004368 246 NEA-LVYITMDE-------ILRPDKAWLHKLEADQSNDICLY----HEKDDIYSLGLQASESKKFLFIASESKITRFVFY 313 (758)
Q Consensus 246 Dg~-l~y~~~~~-------~~~~~~v~~~~l~~~~~~~~~v~----~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~ 313 (758)
||. ++....+. +.....+..++..++ +...++ .......+++..+ +|..++-.+.+ ..|.+
T Consensus 237 dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg--k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~D---gTIkI 309 (356)
T 2w18_A 237 MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT--LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTS---GTIAI 309 (356)
T ss_dssp TTEEEEEEC------------CCEEEEEEETTTT--EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETT---SCEEE
T ss_pred CCCEEEEeccCCCcceeeccCCCcEEEEEECCCC--EEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCC---CcEEE
Confidence 994 43322211 112334555566544 111111 1111111222222 24444332222 34778
Q ss_pred EeCCCCCceEEeecccccee--eEEeecCCEEEEEEc
Q 004368 314 LDVSKPEELRVLTPRVVGVD--TAASHRGNHFFITRR 348 (758)
Q Consensus 314 ~d~~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~s~ 348 (758)
+|+.+++....+......+. ..|+|||+.|+-.+.
T Consensus 310 WDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~ 346 (356)
T 2w18_A 310 WDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK 346 (356)
T ss_dssp EETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred EECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence 89988873344544433332 359999997775543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0088 Score=62.25 Aligned_cols=193 Identities=12% Similarity=0.101 Sum_probs=98.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-----cCcceeEEEecCCeEEEEEeCCCCCCceEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-----VGVTASVEWAGNEALVYITMDEILRPDKAWL 265 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-----~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~ 265 (758)
.+..+.+||| +||-.. .+ ..|++||+.++..... .+ .+....++|+|||.++.+...+. .|.+
T Consensus 16 ~v~~~~~s~~--~las~~-~D----~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~----~v~i 84 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGS-TD----RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS----TVSI 84 (330)
T ss_dssp CEEEEEEETT--EEEEEE-SS----SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS----CEEE
T ss_pred ceeeeccCCC--EEEEEc-CC----CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC----cEEE
Confidence 3567788988 555433 23 3699999987642211 12 12356699999995545544322 3666
Q ss_pred EEcCCCC-----CCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCC-Cc---eEEeeccccceee-E
Q 004368 266 HKLEADQ-----SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP-EE---LRVLTPRVVGVDT-A 335 (758)
Q Consensus 266 ~~l~~~~-----~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~-~~---~~~l~~~~~~~~~-~ 335 (758)
+++.... .+....+... ......+.|+|||++|+..+.+. .|.++|+... .. ...+......+.. .
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~sp~g~~las~s~D~---~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGH-ENEVKGVAWSNDGYYLATCSRDK---SVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTS---CEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEcccCcCccccceeEEEEcCC-CCcEEEEEECCCCCEEEEEeCCC---EEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 6664321 0112223222 22344788999999887654432 3566677322 11 2223333333333 4
Q ss_pred EeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcce-e-eecCCCCceeeeEEEeCC---EEEEEEEeCCeeEEEEEEcC
Q 004368 336 ASHRGNHFFITRRSDELFNSELLACPVDNTSETT-V-LIPHRESVKLQDIQLFID---HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 336 ~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~-~-l~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~l~v~~l~ 408 (758)
|+|++..|+..+.++ ..+|+... ...... . +..+. ..+..+.+..+ ..++....++. +++|++.
T Consensus 161 ~~p~~~~l~s~s~D~---~i~iW~~~--~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~s~D~~--v~iw~~~ 229 (330)
T 2hes_X 161 WHPSEALLASSSYDD---TVRIWKDY--DDDWECVAVLNGHE--GTVWSSDFDKTEGVFRLCSGSDDST--VRVWKYM 229 (330)
T ss_dssp ECSSSSEEEEEETTS---CEEEEEEE--TTEEEEEEEECCCS--SCEEEEEECCSSSSCEEEEEETTSC--EEEEEEE
T ss_pred ECCCCCEEEEEcCCC---eEEEEECC--CCCeeEEEEccCCC--CcEEEEEecCCCCeeEEEEEeCCCe--EEEEEec
Confidence 899998766555432 34454332 211111 1 22232 23445555543 34556666665 6677765
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.032 Score=58.68 Aligned_cols=193 Identities=9% Similarity=0.064 Sum_probs=117.2
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC--cceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
..++.|+|+++.|.|+ |..+ ..|+.++++++........+ ...+++..+.+ .||++... ...|++.++.
T Consensus 75 ~~~l~~d~~~~~ly~~-D~~~---~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~----~~~I~~~~~d 146 (349)
T 3v64_C 75 AIALDFHHRRELVFWS-DVTL---DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG----TSRIEVANLD 146 (349)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT----TTEEEEEETT
T ss_pred eEEEEEeccccEEEEE-eccC---CceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCC----CCeEEEEcCC
Confidence 4577899988887554 4433 26889999887654422122 23458888766 67665432 2368888876
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-ccc-eeeEEeecCCEEEEEE
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHFFITR 347 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-~~~-~~~~~s~dg~~l~~~s 347 (758)
+.. ...+... ....-.++++.|++.+|+++.... ...|+++++++.. .+.+... ... ....+++++++||+.-
T Consensus 147 G~~--~~~l~~~-~l~~P~~iavdp~~g~ly~td~~~-~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 147 GAH--RKVLLWQ-SLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp SCS--CEEEECT-TCSCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCc--eEEEEeC-CCCCcceEEEecCcCeEEEeccCC-CCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 542 2333322 112223677889888888865432 4789999998765 4444332 111 1234888899998874
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEE
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYR 406 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~ 406 (758)
.. +.+|.++++++. ..+.++... .....++.++++.++++-..++ .|..++
T Consensus 222 ~~----~~~I~~~~~dG~-~~~~~~~~~-~~~P~giav~~~~ly~td~~~~--~V~~~~ 272 (349)
T 3v64_C 222 AK----HHVIERANLDGS-HRKAVISQG-LPHPFAITVFEDSLYWTDWHTK--SINSAN 272 (349)
T ss_dssp TT----TTEEEEEETTSC-SCEEEECSS-CSSEEEEEEETTEEEEEETTTT--EEEEEE
T ss_pred CC----CCEEEEEeCCCC-ceEEEEeCC-CCCceEEEEECCEEEEecCCCC--eEEEEE
Confidence 43 368999998762 233344332 2245677888888887654443 455565
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.002 Score=70.32 Aligned_cols=161 Identities=12% Similarity=0.101 Sum_probs=91.8
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCC--------cee-ec-cc---cCcceeEEEecCC-eEEEEEeCCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG--------TPV-GK-PL---VGVTASVEWAGNE-ALVYITMDEI 257 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g--------~~~-~~-~~---~~~~~~~~wspDg-~l~y~~~~~~ 257 (758)
.+..+.|||||++||..... |+....|+|||+.++ +.. .. .. ......++|+|++ .++.+...++
T Consensus 94 ~v~~l~~spdg~~lav~~~s-gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMS-SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEE-TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred cccEEEEcCCCCEEEEEEec-cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 37788999999999875422 344678999998765 111 11 11 2235669999994 6555554332
Q ss_pred CCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc-------
Q 004368 258 LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV------- 330 (758)
Q Consensus 258 ~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~------- 330 (758)
.|.++++.++ ...... .........+.|+|||++|+..+.+ ..|.++|+. ++....+.....
T Consensus 173 ----~v~iwD~~~~--~~~~~~-~~~~~~v~~v~wspdg~~lasgs~d---g~v~iwd~~-~~~~~~~~~~~~~~~~~~~ 241 (434)
T 2oit_A 173 ----SIAVLQVTET--VKVCAT-LPSTVAVTSVCWSPKGKQLAVGKQN---GTVVQYLPT-LQEKKVIPCPPFYESDHPV 241 (434)
T ss_dssp ----CEEEEEESSS--EEEEEE-ECGGGCEEEEEECTTSSCEEEEETT---SCEEEECTT-CCEEEEECCCTTCCTTSCE
T ss_pred ----eEEEEEcCCC--cceeec-cCCCCceeEEEEcCCCCEEEEEcCC---CcEEEEccC-CcccccccCCcccCCCCce
Confidence 4778888765 112111 1112234578999999998876543 347778887 331222221110
Q ss_pred ce-eeEEeecCCEEEEEEcCCCC--CCcEEEEEeCCC
Q 004368 331 GV-DTAASHRGNHFFITRRSDEL--FNSELLACPVDN 364 (758)
Q Consensus 331 ~~-~~~~s~dg~~l~~~s~~~~~--~~~~L~~~~~~~ 364 (758)
.+ ...|++++..++..++.++. ....+..+++..
T Consensus 242 ~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 242 RVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred eEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 11 23488877665554544321 123466666643
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.62 E-value=0.01 Score=60.76 Aligned_cols=242 Identities=10% Similarity=0.072 Sum_probs=124.1
Q ss_pred EeeEEECCCCCEEEEEEe---CCCCeEEEEEEEECCCCceeeccc------cCcceeEEEecC-CeEEEEEeCCCCCCce
Q 004368 193 VGCFQVSPDNKLVAYAED---TKGDEIYTVYVIDIETGTPVGKPL------VGVTASVEWAGN-EALVYITMDEILRPDK 262 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~---~~G~e~~~l~v~dl~~g~~~~~~~------~~~~~~~~wspD-g~l~y~~~~~~~~~~~ 262 (758)
..++.|+|||+.++ +.. ..+.....|+++|+++|+...... .....++++++| |.++..... ..
T Consensus 20 ~~~~~~~~~g~l~~-~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-----~~ 93 (314)
T 1pjx_A 20 AEGPVFDKNGDFYI-VAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-----LG 93 (314)
T ss_dssp CEEEEECTTSCEEE-EETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----TE
T ss_pred ccCceECCCCCEEE-EEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----CC
Confidence 45789999997544 310 001112469999998888754322 123456899999 777665532 15
Q ss_pred EEEEEcCCCCCCcEEE-eeecC---CceeeEEEEcCCCcEEEEEecCC-------------cceEEEEEeCCCCCceEEe
Q 004368 263 AWLHKLEADQSNDICL-YHEKD---DIYSLGLQASESKKFLFIASESK-------------ITRFVFYLDVSKPEELRVL 325 (758)
Q Consensus 263 v~~~~l~~~~~~~~~v-~~~~~---~~~~~~~~~S~Dg~~l~~~s~~~-------------~~~~l~~~d~~~~~~~~~l 325 (758)
|++++.. + +...+ ..... .....++.+++||+.. +..... ....||.++.+ ++ ...+
T Consensus 94 l~~~d~~-g--~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~ 167 (314)
T 1pjx_A 94 LLVVQTD-G--TFEEIAKKDSEGRRMQGCNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQV 167 (314)
T ss_dssp EEEEETT-S--CEEECCSBCTTSCBCBCCCEEEECTTSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEE
T ss_pred EEEEeCC-C--CEEEEEeccCCCccccCCcCEEECCCCCEE-EEecCcccccccccccccCCCCeEEEECCC-CC-EEEe
Confidence 8888776 4 22222 22111 1122367789999754 433221 12579999987 54 4443
Q ss_pred eccccc-eeeEEe----ecCCEEEEEEcCCCCCCcEEEEEeCCCCCcc---eee--ecCCCCceeeeEEEeCC-EEEEEE
Q 004368 326 TPRVVG-VDTAAS----HRGNHFFITRRSDELFNSELLACPVDNTSET---TVL--IPHRESVKLQDIQLFID-HLAVYE 394 (758)
Q Consensus 326 ~~~~~~-~~~~~s----~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~---~~l--~~~~~~~~~~~~~~~~~-~l~~~~ 394 (758)
...... ....++ ++|+.+|+....+ .+|++++.+..+.. ..+ ++......+.++.++.+ .+++..
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPT----KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETTT----TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECCC----CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence 322111 123478 8888777765433 56877776421111 111 12111034566777764 444443
Q ss_pred EeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCC
Q 004368 395 REGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDM 464 (758)
Q Consensus 395 ~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~ 464 (758)
..++ .|.+++.+. |+.. ..+..+. ..+.+...+++++.++++-. ....++.+++..
T Consensus 244 ~~~~--~i~~~d~~~-g~~~------~~~~~~~--~~~~~i~~~~dg~~l~v~~~---~~~~l~~~~~~~ 299 (314)
T 1pjx_A 244 WGSS--HIEVFGPDG-GQPK------MRIRCPF--EKPSNLHFKPQTKTIFVTEH---ENNAVWKFEWQR 299 (314)
T ss_dssp ETTT--EEEEECTTC-BSCS------EEEECSS--SCEEEEEECTTSSEEEEEET---TTTEEEEEECSS
T ss_pred cCCC--EEEEEcCCC-CcEe------EEEeCCC--CCceeEEECCCCCEEEEEeC---CCCeEEEEeCCC
Confidence 3333 466665442 3321 2222221 11222334556665655432 225788887654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.012 Score=59.06 Aligned_cols=191 Identities=10% Similarity=0.076 Sum_probs=105.6
Q ss_pred eeEEECCCCCEEEEEEeC-CCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 194 GCFQVSPDNKLVAYAEDT-KGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~-~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
.++.++||| + +|.... .| ...|.++|+++|+.+.. .++....+...+.+| ++|.+.. ....++.++..+
T Consensus 24 ~Gl~~~~dg-~-Lyvstg~~~--~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~----~~~~v~viD~~t 95 (266)
T 2iwa_A 24 QGLVYAEND-T-LFESTGLYG--RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW----LKNIGFIYDRRT 95 (266)
T ss_dssp EEEEECSTT-E-EEEEECSTT--TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET----TCSEEEEEETTT
T ss_pred ccEEEeCCC-e-EEEECCCCC--CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe----cCCEEEEEECCC
Confidence 467899996 4 455542 23 36799999999998764 333332222344456 6655542 334689999876
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEee--ccccce----eeEEeecCCEEE
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT--PRVVGV----DTAASHRGNHFF 344 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~--~~~~~~----~~~~s~dg~~l~ 344 (758)
... +..+.-..+. +...++||++|+++ + ++..|+.+|.++.+....+. .+...+ +..+. +| .+|
T Consensus 96 ~~v--~~~i~~g~~~---g~glt~Dg~~l~vs-~--gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~ly 165 (266)
T 2iwa_A 96 LSN--IKNFTHQMKD---GWGLATDGKILYGS-D--GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVW 165 (266)
T ss_dssp TEE--EEEEECCSSS---CCEEEECSSSEEEE-C--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred CcE--EEEEECCCCC---eEEEEECCCEEEEE-C--CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEE
Confidence 622 2222211111 23367899998864 3 36789999998876222222 111111 11243 44 676
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceee-ecC----------CCCceeeeEEEeC--CEEEEEEEeCCeeEEEEEEcC
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVL-IPH----------RESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l-~~~----------~~~~~~~~~~~~~--~~l~~~~~~~g~~~l~v~~l~ 408 (758)
...... ..|.++|.++.....++ ++. .....+.++.++. ++++++... .+.++++++.
T Consensus 166 vn~~~~----~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~--~~~v~~i~l~ 236 (266)
T 2iwa_A 166 ANIWQT----DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL--WPKLFEIKLH 236 (266)
T ss_dssp EEETTS----SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT--CSEEEEEEEE
T ss_pred EecCCC----CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC--CCeEEEEEEe
Confidence 443332 47999999874333343 210 1112456777764 466655433 3456666665
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0095 Score=62.78 Aligned_cols=230 Identities=8% Similarity=0.064 Sum_probs=122.9
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..++|||||++||.+.+. .+.|||+++++.... ...+ ...+.|++++ .++.+...+ ..|.++++.
T Consensus 21 ~V~~v~fs~dg~~la~g~~~------~~~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d----~~v~iWd~~ 89 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLK------SFEIYNVHPVAHIMSQEMRH-LSKVRMLHRTNYVAFVTGVK----EVVHIWDDV 89 (355)
T ss_dssp CCCEEEECTTSSEEEEECSS------EEEEEEETTEEEEEEEECSC-CCEEEECTTSSEEEEECSST----TEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEcCC------EEEEEecCCcceeeeeecCC-eEEEEEcCCCCEEEEEECCc----cEEEEEECC
Confidence 36678999999999865432 256889887765432 2223 4457899988 555554332 268888887
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCC-CceEEeeccccceeeEEeecCCEEEEEEc
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP-EELRVLTPRVVGVDTAASHRGNHFFITRR 348 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~-~~~~~l~~~~~~~~~~~s~dg~~l~~~s~ 348 (758)
++ +....+.. ......+.+++++ +++.. ...|+++|+.++ +....+.. .. ....+++ ..+++.+.
T Consensus 90 ~~--~~~~~~~~--~~~v~~v~~~~~~--~~~~~----~~~i~i~d~~~~~~~~~~~~~-~~-~~~~~s~--~~la~~sg 155 (355)
T 3vu4_A 90 KK--QDVSRIKV--DAPVKDLFLSREF--IVVSY----GDVISVFKFGNPWKRITDDIR-FG-GVCEFSN--GLLVYSNE 155 (355)
T ss_dssp TT--EEEEEEEC--SSCEEEEEECSSE--EEEEE----TTEEEEEESSTTCCBSSCCEE-EE-EEEEEET--TEEEEEES
T ss_pred CC--cEEEEEEC--CCceEEEEEcCCE--EEEEE----cCEEEEEECCCCceeeEEecc-CC-ceEEEEc--cEEEEeCC
Confidence 66 22333332 2233467787774 33332 235888898876 31222222 11 1223555 56666533
Q ss_pred CCCCCCcEEEEEeCCCCCc----------------ceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCC
Q 004368 349 SDELFNSELLACPVDNTSE----------------TTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVG 411 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~----------------~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g 411 (758)
.. .+.|..+|+.+... ...+..+. ..+..+.+..+ .++++...++. .+++|++.. +
T Consensus 156 ~~---~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~--~~v~~~~~s~~g~~l~s~s~d~~-~v~iwd~~~-~ 228 (355)
T 3vu4_A 156 FN---LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT--NPIKMVRLNRKSDMVATCSQDGT-IIRVFKTED-G 228 (355)
T ss_dssp SC---TTCEEEEECCC------------------CCEEECCCS--SCEEEEEECTTSSEEEEEETTCS-EEEEEETTT-C
T ss_pred Cc---CcEEEEEECCCCCccccccccccccccCcccEEEEccC--CceEEEEECCCCCEEEEEeCCCC-EEEEEECCC-C
Confidence 32 24577777764220 11233333 24556666554 34445555652 267888874 3
Q ss_pred CccccccCCceeecc-C-cccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCC
Q 004368 412 EPLKSLQGGKSVEFI-D-PVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMG 465 (758)
Q Consensus 412 ~~~~~l~~~~~i~~p-~-~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~ 465 (758)
+.+ ..+. . ....+..+.++++++.+.. .+ .. ..+..+|+..+
T Consensus 229 ~~~--------~~~~~g~h~~~v~~~~~s~~~~~l~s-~s-~d--~~v~iw~~~~~ 272 (355)
T 3vu4_A 229 VLV--------REFRRGLDRADVVDMKWSTDGSKLAV-VS-DK--WTLHVFEIFND 272 (355)
T ss_dssp CEE--------EEEECTTCCSCEEEEEECTTSCEEEE-EE-TT--CEEEEEESSCC
T ss_pred cEE--------EEEEcCCCCCcEEEEEECCCCCEEEE-EE-CC--CEEEEEEccCC
Confidence 322 1122 1 1223344556777766543 22 22 56788887654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0044 Score=65.66 Aligned_cols=112 Identities=7% Similarity=-0.202 Sum_probs=66.7
Q ss_pred CCCEEEEEEeCCCCeEE-EEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeC---C---CCCCceEEEEEcCCCC
Q 004368 201 DNKLVAYAEDTKGDEIY-TVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMD---E---ILRPDKAWLHKLEADQ 272 (758)
Q Consensus 201 DG~~lAy~~~~~G~e~~-~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~---~---~~~~~~v~~~~l~~~~ 272 (758)
+..+ +|..+..++.-. +|.|+|+++++.+.. .....- ++.+||||+.+|++.. + +.+...|..+++.+..
T Consensus 30 ~~~~-~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 30 ISRR-SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp CTTE-EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred CCCe-EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 3344 677776554222 899999999998763 222223 7999999954455531 1 1223568888888774
Q ss_pred CCcEEEee-------ecCCceeeEEEEcCCCcEEEEEecCCcceEEEE--EeCCC
Q 004368 273 SNDICLYH-------EKDDIYSLGLQASESKKFLFIASESKITRFVFY--LDVSK 318 (758)
Q Consensus 273 ~~~~~v~~-------~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~--~d~~~ 318 (758)
....+... ..++. .+.+||||++|++.... ....+.+ +|+.+
T Consensus 108 vv~~I~v~~~~~~~~g~~P~---~ia~SpDGk~lyVan~~-~~~~v~V~~iD~~t 158 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVH---IIGNCASSACLLFFLFG-SSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTT---SEEECTTSSCEEEEECS-SSCEEEEEETTTEE
T ss_pred EEEEEECCCccccccCCCcc---eEEEcCCCCEEEEEccC-CCCeEEEEEEchhh
Confidence 32222221 01222 46789999999886432 2344555 66644
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.024 Score=58.32 Aligned_cols=197 Identities=13% Similarity=0.174 Sum_probs=102.2
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
..++.|+|||+ .|..+..+ ..|+.+|.+++........+...++++++||++|...... ...+|+..+..++
T Consensus 34 pegia~~~~g~--lyv~d~~~---~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~--~~~~v~~~d~~~g- 105 (306)
T 2p4o_A 34 LENLASAPDGT--IFVTNHEV---GEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNA--DSIPVVSLVKSDG- 105 (306)
T ss_dssp EEEEEECTTSC--EEEEETTT---TEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECT--TSCEEEEEECTTS-
T ss_pred cceEEECCCCC--EEEEeCCC---CeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccC--CcceEEEEcCCCC-
Confidence 45789999998 45566443 2588999876543322334445668999999865443221 1124777666554
Q ss_pred CCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeecc------ccce--eeEEeecCCEE
Q 004368 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPR------VVGV--DTAASHRGNHF 343 (758)
Q Consensus 273 ~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~------~~~~--~~~~s~dg~~l 343 (758)
+-..+.......+.-++...+++ .+++... ....||.+|..++. ........ .... -..+++||++|
T Consensus 106 -~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~--~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~l 181 (306)
T 2p4o_A 106 -TVETLLTLPDAIFLNGITPLSDT-QYLTADS--YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFL 181 (306)
T ss_dssp -CEEEEEECTTCSCEEEEEESSSS-EEEEEET--TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEE
T ss_pred -eEEEEEeCCCccccCcccccCCC-cEEEEEC--CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEE
Confidence 22233332223333344444554 4444322 23479999987643 12111110 0111 11258999988
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCc-c-eeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 344 FITRRSDELFNSELLACPVDNTSE-T-TVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
|+.... +.+|++++++..+. . ..++... ....++.++.+.-+++.... ...|.+++.+
T Consensus 182 yv~d~~----~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~-~~~V~~~~~~ 241 (306)
T 2p4o_A 182 YVSNTE----KMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHI-YNSVVRIAPD 241 (306)
T ss_dssp EEEETT----TTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBT-TCCEEEECTT
T ss_pred EEEeCC----CCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCC-CCeEEEECCC
Confidence 876543 36899998764111 1 1122111 13456777765433333322 2346666543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0076 Score=65.08 Aligned_cols=198 Identities=9% Similarity=0.011 Sum_probs=113.3
Q ss_pred eEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC-cceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 190 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 190 ~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
+.....+.|+|||+ .|..+..+ ..|+++|+++++........ ... ++|+|||..+|+..... ...|+..+.
T Consensus 130 ~~~P~~la~d~~g~--lyv~d~~~---~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~--~~~I~~~d~ 201 (409)
T 3hrp_A 130 FKYMWGIAAVGNNT--VLAYQRDD---PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEG--THTVYVYMK 201 (409)
T ss_dssp CCCEEEEEECSTTE--EEEEETTT---TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSST--TCEEEEEEG
T ss_pred cCCceEEEEeCCCC--EEEEecCC---CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCC--CceEEEEEc
Confidence 33566789999998 46666543 36999999988876542122 223 89999995455554322 126888887
Q ss_pred CCCCCCcEEEeee--c-CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEe----eccccce----eeEEe
Q 004368 269 EADQSNDICLYHE--K-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL----TPRVVGV----DTAAS 337 (758)
Q Consensus 269 ~~~~~~~~~v~~~--~-~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l----~~~~~~~----~~~~s 337 (758)
.++.. ...... . ......++.++|++..|++.. . ...|+++|.+++. ...+ .....+. ...++
T Consensus 202 ~~~~~--~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d-~--~~~I~~~d~~~~~-~~~~~~~~~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 202 ASGWA--PTRIGQLGSTFSGKIGAVALDETEEWLYFVD-S--NKNFGRFNVKTQE-VTLIKQLELSGSLGTNPGPYLIYY 275 (409)
T ss_dssp GGTTC--EEEEEECCTTSCSCCCBCEECTTSSEEEEEC-T--TCEEEEEETTTCC-EEEEEECCCCSCCCCSSCCEEEEE
T ss_pred CCCce--eEEeeeccchhcCCcEEEEEeCCCCeEEEEE-C--CCcEEEEECCCCC-EEEEecccccCCCCCCccccEEEe
Confidence 65422 122210 1 111223567899767777732 2 4579999998775 4443 1111111 33488
Q ss_pred ecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCC---C----------CceeeeEEEeCCE-EEEEEEeCCeeEEE
Q 004368 338 HRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHR---E----------SVKLQDIQLFIDH-LAVYEREGGLQKIT 403 (758)
Q Consensus 338 ~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~---~----------~~~~~~~~~~~~~-l~~~~~~~g~~~l~ 403 (758)
|+++.||+.... +.+|++++.++. ...+.... . -....++.++.+. +++.-. .+..+|+
T Consensus 276 p~~g~lyv~d~~----~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-~~~~~I~ 348 (409)
T 3hrp_A 276 FVDSNFYMSDQN----LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-FKGYCLR 348 (409)
T ss_dssp TTTTEEEEEETT----TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET-TTTCEEE
T ss_pred CCCCEEEEEeCC----CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC-CCCCEEE
Confidence 888888877443 468999887652 22232221 0 1125567777654 443322 0345677
Q ss_pred EEEcC
Q 004368 404 TYRLP 408 (758)
Q Consensus 404 v~~l~ 408 (758)
++++.
T Consensus 349 ~~~~~ 353 (409)
T 3hrp_A 349 KLDIL 353 (409)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 77754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0029 Score=66.80 Aligned_cols=111 Identities=13% Similarity=0.120 Sum_probs=67.0
Q ss_pred eeEEECCCCCEEEEEE-eCCCCeEEEEEEEECCCCc-----------------eeecc-ccCcceeEEEecCCeEEEEEe
Q 004368 194 GCFQVSPDNKLVAYAE-DTKGDEIYTVYVIDIETGT-----------------PVGKP-LVGVTASVEWAGNEALVYITM 254 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~-~~~G~e~~~l~v~dl~~g~-----------------~~~~~-~~~~~~~~~wspDg~l~y~~~ 254 (758)
+...+|| +++|+.. ...| .|++||+.+++ ..... -.+....++|+|||.++.+..
T Consensus 141 ~~~~~s~--~~la~~sg~~~g----~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s 214 (355)
T 3vu4_A 141 GVCEFSN--GLLVYSNEFNLG----QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS 214 (355)
T ss_dssp EEEEEET--TEEEEEESSCTT----CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEc--cEEEEeCCCcCc----EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence 3445666 7788763 3333 69999999865 12111 122356799999996555554
Q ss_pred CCCCCCce-EEEEEcCCCCCCcEEEeeec-CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCC
Q 004368 255 DEILRPDK-AWLHKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP 319 (758)
Q Consensus 255 ~~~~~~~~-v~~~~l~~~~~~~~~v~~~~-~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~ 319 (758)
.+. . |.++++.++ +....+... .......+.|+|||++|+..+.+ ..|.++|+..+
T Consensus 215 ~d~----~~v~iwd~~~~--~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d---~~v~iw~~~~~ 272 (355)
T 3vu4_A 215 QDG----TIIRVFKTEDG--VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK---WTLHVFEIFND 272 (355)
T ss_dssp TTC----SEEEEEETTTC--CEEEEEECTTCCSCEEEEEECTTSCEEEEEETT---CEEEEEESSCC
T ss_pred CCC----CEEEEEECCCC--cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC---CEEEEEEccCC
Confidence 332 3 777788776 334445422 33445578999999998765543 34666676554
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.039 Score=56.02 Aligned_cols=230 Identities=11% Similarity=0.074 Sum_probs=120.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCce---ee-cc-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP---VG-KP-LVGVTASVEWAGNEALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~---~~-~~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~ 266 (758)
.+..+.|||||++|+..... | .|+++++..... .. .. -......+.| ++.++++...+. .+.++
T Consensus 61 ~v~~~~~~~~~~~l~~~~~d-g----~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~----~i~~~ 129 (313)
T 3odt_A 61 FLNSVCYDSEKELLLFGGKD-T----MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDK----TAKVW 129 (313)
T ss_dssp CEEEEEEETTTTEEEEEETT-S----CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTS----EEEEE
T ss_pred cEEEEEECCCCCEEEEecCC-C----eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCC----CEEEE
Confidence 46788999999999876542 3 478888876432 21 11 1222455777 553444443322 36666
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcC-CCcEEEEEecCCcceEEEEEeCCCCCceEEeec-ccccee-eEEeecCCEE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGVD-TAASHRGNHF 343 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~-Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~~~-~~~s~dg~~l 343 (758)
+ .. +....+.... .....+.+++ ++++|+..+.+ ..|.++|... ....+.. ....+. ..+++++. +
T Consensus 130 d--~~--~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~--~~~~~~~~~~~~i~~~~~~~~~~-~ 198 (313)
T 3odt_A 130 K--EG--SLVYNLQAHN-ASVWDAKVVSFSENKFLTASAD---KTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGH-F 198 (313)
T ss_dssp E--TT--EEEEEEECCS-SCEEEEEEEETTTTEEEEEETT---SCEEEEETTE--EEEEECSSCSSCEEEEEEEETTE-E
T ss_pred c--CC--cEEEecccCC-CceeEEEEccCCCCEEEEEECC---CCEEEEecCc--eEEEEeccCcccEEEEEEcCCCe-E
Confidence 6 22 2233333322 2233566776 88887765443 2366667332 2333332 222233 24888887 4
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCcee
Q 004368 344 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 423 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i 423 (758)
+..+ .+ ..|..+|+........+..+. ..+..+.+..+..+++...++. +.+|++.. ++.. ..+
T Consensus 199 ~~~~-~d----g~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~l~~~~~dg~--v~iwd~~~-~~~~------~~~ 262 (313)
T 3odt_A 199 ISCS-ND----GLIKLVDMHTGDVLRTYEGHE--SFVYCIKLLPNGDIVSCGEDRT--VRIWSKEN-GSLK------QVI 262 (313)
T ss_dssp EEEE-TT----SEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSCEEEEETTSE--EEEECTTT-CCEE------EEE
T ss_pred EEcc-CC----CeEEEEECCchhhhhhhhcCC--ceEEEEEEecCCCEEEEecCCE--EEEEECCC-Ccee------EEE
Confidence 4333 32 468888887532222233232 3456777776544556666665 77888764 3311 112
Q ss_pred eccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 424 EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 424 ~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
. .+...+....+++++. + ++.+ .-..+..||+.+++
T Consensus 263 ~--~~~~~i~~~~~~~~~~-~-~~~~---~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 263 T--LPAISIWSVDCMSNGD-I-IVGS---SDNLVRIFSQEKSR 298 (313)
T ss_dssp E--CSSSCEEEEEECTTSC-E-EEEE---TTSCEEEEESCGGG
T ss_pred e--ccCceEEEEEEccCCC-E-EEEe---CCCcEEEEeCCCCc
Confidence 2 2222233344556665 3 2222 23468888887665
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.086 Score=54.44 Aligned_cols=196 Identities=5% Similarity=0.020 Sum_probs=112.3
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCC----CceeeccccC--cceeEEEecCC-eEEEEEeCCCCCCceEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET----GTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~----g~~~~~~~~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~~ 265 (758)
..++.|+++++.|.|+ |..+ ..|+.+++++ .........+ ...++++.+.+ .||++... ...|.+
T Consensus 32 p~g~~~d~~~~~ly~~-D~~~---~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~----~~~I~~ 103 (316)
T 1ijq_A 32 VVALDTEVASNRIYWS-DLSQ---RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV----LGTVSV 103 (316)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT----TTEEEE
T ss_pred eEEEEEEeCCCEEEEE-ECCC---CcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECC----CCEEEE
Confidence 4578899988887555 4333 3688899886 2222111111 23568888766 67665322 235777
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-ccc-eeeEEeecCCEE
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHF 343 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-~~~-~~~~~s~dg~~l 343 (758)
.++.+. ....+... ....-.++...|++++|+++... ....|+++++++.. .+.+... ... ....+++++++|
T Consensus 104 ~~~~g~--~~~~~~~~-~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 104 ADTKGV--KRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp EETTSS--SEEEEEEC-TTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEE
T ss_pred EeCCCC--ceEEEEEC-CCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEE
Confidence 777643 22333332 11222367789988888876532 23689999997654 4444322 111 123488889999
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCcceeeecC-CCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 344 FITRRSDELFNSELLACPVDNTSETTVLIPH-RESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
|+.-.. +.+|.+++.++. ..+.+... .......++.++++.++++...+ .+|..++..
T Consensus 179 Y~~D~~----~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~--~~V~~~~~~ 237 (316)
T 1ijq_A 179 YWVDSK----LHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIIN--EAIFSANRL 237 (316)
T ss_dssp EEEETT----TTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEETTEEEEEETTT--TEEEEEETT
T ss_pred EEEECC----CCeEEEEecCCC-ceEEEeecCCccCCcEEEEEECCEEEEEECCC--CeEEEEeCC
Confidence 987443 468999998762 23334332 12223567888888888765433 356666653
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.027 Score=58.23 Aligned_cols=160 Identities=6% Similarity=0.076 Sum_probs=90.4
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-c-c-CcceeEEEecCCeEEEEEeCC--CCCCceEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-L-V-GVTASVEWAGNEALVYITMDE--ILRPDKAWLH 266 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~-~-~~~~~~~wspDg~l~y~~~~~--~~~~~~v~~~ 266 (758)
+..+.++|||+.++.... .+.....|+++|+++++.... . . . .....++++|||.++++.... ......||++
T Consensus 89 ~~~i~~~~dg~l~v~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~ 167 (333)
T 2dg1_A 89 PAAIKIHKDGRLFVCYLG-DFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV 167 (333)
T ss_dssp EEEEEECTTSCEEEEECT-TSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred cceEEECCCCcEEEEeCC-CCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEE
Confidence 567899999986654432 211224799999998876522 1 1 1 124568999999877765421 1123468877
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCC-CCceEEe-----ecccc--ce-eeEEe
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK-PEELRVL-----TPRVV--GV-DTAAS 337 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~-~~~~~~l-----~~~~~--~~-~~~~s 337 (758)
+..++ +...+..... ...++.|+|||++|++.... ...|+++|+++ +.....+ ..... .. ...++
T Consensus 168 ~~~~~--~~~~~~~~~~--~~~~i~~~~dg~~l~v~~~~--~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d 241 (333)
T 2dg1_A 168 SPDFR--TVTPIIQNIS--VANGIALSTDEKVLWVTETT--ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 241 (333)
T ss_dssp CTTSC--CEEEEEEEES--SEEEEEECTTSSEEEEEEGG--GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred eCCCC--EEEEeecCCC--cccceEECCCCCEEEEEeCC--CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence 76543 2222222211 23367899999988876432 34688888853 2212211 11111 11 12367
Q ss_pred ecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 338 HRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 338 ~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
++|+ +|+.+..+ ..|++++.++
T Consensus 242 ~~G~-l~v~~~~~----~~v~~~d~~g 263 (333)
T 2dg1_A 242 SDDN-LYVAMYGQ----GRVLVFNKRG 263 (333)
T ss_dssp TTCC-EEEEEETT----TEEEEECTTS
T ss_pred CCCC-EEEEEcCC----CEEEEECCCC
Confidence 7776 66655432 4788888743
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0023 Score=71.65 Aligned_cols=244 Identities=10% Similarity=0.016 Sum_probs=119.3
Q ss_pred EEeeEEECCCC---------CEEEEEEeCC--------------CCeEEEEEEEECCCCceee---ccc---cCcceeEE
Q 004368 192 SVGCFQVSPDN---------KLVAYAEDTK--------------GDEIYTVYVIDIETGTPVG---KPL---VGVTASVE 242 (758)
Q Consensus 192 ~i~~~~~SPDG---------~~lAy~~~~~--------------G~e~~~l~v~dl~~g~~~~---~~~---~~~~~~~~ 242 (758)
.+..+.|+|++ ++||.+.... ++...+|.|||+++++... ..+ .+....++
T Consensus 135 ~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~ 214 (524)
T 2j04_B 135 LVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLK 214 (524)
T ss_dssp --CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEE
T ss_pred ceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEE
Confidence 35567788887 7887765431 3345689999998876421 111 23356689
Q ss_pred EecC------CeEEEEEeCCCCCCceEEEEEcCCCCCC---------cEEEeeecCCceeeEEEEcCCCcEEEEEecCCc
Q 004368 243 WAGN------EALVYITMDEILRPDKAWLHKLEADQSN---------DICLYHEKDDIYSLGLQASESKKFLFIASESKI 307 (758)
Q Consensus 243 wspD------g~l~y~~~~~~~~~~~v~~~~l~~~~~~---------~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~ 307 (758)
|+|+ +.++.+...++ .|.++++.++... ....+... .....+++|++++ .|+..+.+
T Consensus 215 wsp~~~~~~~~~~LAs~s~Dg----tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h-~~~v~sv~~s~~~-~lasgs~D-- 286 (524)
T 2j04_B 215 WHEGCHAPHLVGCLSFVSQEG----TINFLEIIDNATDVHVFKMCEKPSLTLSLA-DSLITTFDFLSPT-TVVCGFKN-- 286 (524)
T ss_dssp ECSSCCCSSSSCEEEEEETTS----CEEEEECCCCSSSSSEEECCCSCSEEECCT-TTCEEEEEESSSS-EEEEEETT--
T ss_pred ECCCCCCCCCCceEEEEecCC----eEEEEEcCCCccccccceeecCceEEEEcC-CCCEEEEEecCCC-eEEEEeCC--
Confidence 9997 34555544332 3667777654211 11122222 2334578899875 45443322
Q ss_pred ceEEEEEeCCCCC-ceEEeeccccceee---EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeE
Q 004368 308 TRFVFYLDVSKPE-ELRVLTPRVVGVDT---AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDI 383 (758)
Q Consensus 308 ~~~l~~~d~~~~~-~~~~l~~~~~~~~~---~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~ 383 (758)
..|.++|+.++. ....+......+.. .++++|..+++....+ ..|...|+.+......+..+.....+..+
T Consensus 287 -gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D----~tvklWD~~~~~~~~~~~~~~~~~~v~~v 361 (524)
T 2j04_B 287 -GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVD----GYFYIFNPKDIATTKTTVSRFRGSNLVPV 361 (524)
T ss_dssp -SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETT----SEEEEECGGGHHHHCEEEEECSCCSCCCE
T ss_pred -CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccC----CeEEEEECCCCCcccccccccccCcccce
Confidence 346777887654 23334434333332 3567773444444443 35666776542111122222211123344
Q ss_pred EEeC--CEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEE
Q 004368 384 QLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYD 461 (758)
Q Consensus 384 ~~~~--~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d 461 (758)
.+.. .. ++....++ .+++|++.. +..+ ..+......|..+.+++++..++ +-+ .-..+..+|
T Consensus 362 ~fsp~~~~-l~s~~~d~--tv~lwd~~~-~~~~--------~~l~gH~~~V~sva~Sp~g~~l~-Sgs---~Dgtv~lwd 425 (524)
T 2j04_B 362 VYCPQIYS-YIYSDGAS--SLRAVPSRA-AFAV--------HPLVSRETTITAIGVSRLHPMVL-AGS---ADGSLIITN 425 (524)
T ss_dssp EEETTTTE-EEEECSSS--EEEEEETTC-TTCC--------EEEEECSSCEEEEECCSSCCBCE-EEE---TTTEEECCB
T ss_pred EeCCCcCe-EEEeCCCC--cEEEEECcc-cccc--------eeeecCCCceEEEEeCCCCCeEE-EEE---CCCEEEEEe
Confidence 5554 34 33444444 477888763 2211 11212222333445666766543 222 123566666
Q ss_pred CCC
Q 004368 462 MDM 464 (758)
Q Consensus 462 ~~~ 464 (758)
+..
T Consensus 426 ~~~ 428 (524)
T 2j04_B 426 AAR 428 (524)
T ss_dssp SCS
T ss_pred chH
Confidence 543
|
| >4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00045 Score=76.01 Aligned_cols=114 Identities=21% Similarity=0.190 Sum_probs=77.4
Q ss_pred CCCCEEEEecCCCccCCCCCC--ChHHHHHHH-cCcEEEEEecCCCCCCc---hhHHh--cccccCCcChHhHHHHHHHH
Q 004368 514 GSDPLLLYGYGSYEICNDPAF--NSSRLSLLD-RGFIFAIAQIRGGGELG---RQWYE--NGKFLKKKNTFTDFIACAEY 585 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~--~~~~~~l~~-~G~~v~~~~~RG~g~~G---~~~~~--~~~~~~~~~~~~D~~~~~~~ 585 (758)
+..|++|++-| -+.. .... ......+++ .|.++++...|-=|++- ....+ .-+...-.+.+.|+...+++
T Consensus 41 ~~gPIfl~~gG-Eg~~-~~~~~~~g~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~st~~~nL~yLt~eQALaD~a~fi~~ 118 (472)
T 4ebb_A 41 GEGPIFFYTGN-EGDV-WAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRA 118 (472)
T ss_dssp TTCCEEEEECC-SSCH-HHHHHHCHHHHHHHHHHTCEEEEECCTTSTTCCTTGGGGGSTTSCTTCSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECC-Cccc-cccccCccHHHHHHHHhCCeEEEEecccccCCcCCCCCCccccccccCCHHHHHHHHHHHHHH
Confidence 34699998844 3221 1100 112234554 49999999999755542 11111 11223445778999999999
Q ss_pred HHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 586 LIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 586 l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
+...-.....++.++|+||||.|++++-.++|++|.|+++.++.
T Consensus 119 ~k~~~~~~~~pwI~~GGSY~G~LaAW~R~kYP~lv~ga~ASSAp 162 (472)
T 4ebb_A 119 LRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAP 162 (472)
T ss_dssp HHHHTTCTTCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCC
T ss_pred HHhhcCCCCCCEEEEccCccchhhHHHHhhCCCeEEEEEecccc
Confidence 87765455679999999999999999999999999999888764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0091 Score=62.15 Aligned_cols=183 Identities=10% Similarity=0.058 Sum_probs=100.9
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc-----CcceeEEEecCCeEEEEEeCCC--CCCceEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-----GVTASVEWAGNEALVYITMDEI--LRPDKAW 264 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~-----~~~~~~~wspDg~l~y~~~~~~--~~~~~v~ 264 (758)
+..+.|+|||++++.. .. .|+++|+++|+.... ... .....+.|+|||.+++...... .....||
T Consensus 92 v~~i~~~~dg~l~v~~--~~-----gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 92 GSALAKISDSKQLIAS--DD-----GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp EEEEEEEETTEEEEEE--TT-----EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred ceEEEEeCCCeEEEEE--CC-----CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence 5667899999987653 22 399999999886543 111 1245689999998777654321 1234688
Q ss_pred EEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCC--CC-C--ceEEeecc--ccce--eeE
Q 004368 265 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS--KP-E--ELRVLTPR--VVGV--DTA 335 (758)
Q Consensus 265 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~--~~-~--~~~~l~~~--~~~~--~~~ 335 (758)
+++ ++ +...+.... ....++.|+|||++|++.... ...|+++|++ ++ . ..+.+... ..+. ...
T Consensus 165 ~~~--~g--~~~~~~~~~--~~~~~i~~s~dg~~lyv~~~~--~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~ 236 (326)
T 2ghs_A 165 HVA--KG--KVTKLFADI--SIPNSICFSPDGTTGYFVDTK--VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSV 236 (326)
T ss_dssp EEE--TT--EEEEEEEEE--SSEEEEEECTTSCEEEEEETT--TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEE
T ss_pred EEe--CC--cEEEeeCCC--cccCCeEEcCCCCEEEEEECC--CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeE
Confidence 877 33 222232221 122367899999998875432 3578999875 55 3 11222211 1111 123
Q ss_pred EeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEe---CCEEEEEEEeCC
Q 004368 336 ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF---IDHLAVYEREGG 398 (758)
Q Consensus 336 ~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~l~~~~~~~g 398 (758)
++++|. +|+.+..+ ..|++++.++ .....+..+. ..+..+.+. ++.|++.....+
T Consensus 237 ~d~~G~-lwva~~~~----~~v~~~d~~g-~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 237 CDAEGH-IWNARWGE----GAVDRYDTDG-NHIARYEVPG--KQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp ECTTSC-EEEEEETT----TEEEEECTTC-CEEEEEECSC--SBEEEEEEESTTSCEEEEEEBCTT
T ss_pred ECCCCC-EEEEEeCC----CEEEEECCCC-CEEEEEECCC--CCcEEEEEecCCCCEEEEEecCCC
Confidence 667775 66665432 4688888743 2222222111 134455554 245655554443
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0019 Score=69.29 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=48.4
Q ss_pred EEeeEEECC--------CCCEEEEEEeCCCCeEEEEEEEECCCCceeec--cccCcceeEEEecCC-eEEEEEeCCCCCC
Q 004368 192 SVGCFQVSP--------DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRP 260 (758)
Q Consensus 192 ~i~~~~~SP--------DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~wspDg-~l~y~~~~~~~~~ 260 (758)
.+..+.||| ||++||=..+ ..+|+|||+.++..... ........++|+|++ .++.+...+.
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~~las~s~-----D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~--- 209 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQVIASVGD-----DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNG--- 209 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEEEEEEEET-----TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTS---
T ss_pred ceEEEEEccccccccCCCCCEEEEEEC-----CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCC---
Confidence 467788888 9999985543 35799999987765432 223334569999998 5666654332
Q ss_pred ceEEEEEcCCCC
Q 004368 261 DKAWLHKLEADQ 272 (758)
Q Consensus 261 ~~v~~~~l~~~~ 272 (758)
.|.++++.++.
T Consensus 210 -~v~~wd~~t~~ 220 (393)
T 4gq1_A 210 -NIRIFDWTLNL 220 (393)
T ss_dssp -EEEEEETTCCC
T ss_pred -EEEEEECCCCc
Confidence 46777776653
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00059 Score=67.69 Aligned_cols=143 Identities=11% Similarity=0.052 Sum_probs=82.4
Q ss_pred EEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCC-CC---------C-------hHHHHHHHcCcEEEE
Q 004368 488 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AF---------N-------SSRLSLLDRGFIFAI 550 (758)
Q Consensus 488 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~-~~---------~-------~~~~~l~~~G~~v~~ 550 (758)
.+.+....|..+.-|++..+. . ....|++|+.+||||.+... +. . .....|. +-..++.
T Consensus 23 y~~v~~~~~~~lFywf~es~~--~-~~~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW~-~~anvlf 98 (255)
T 1whs_A 23 YITVDEGAGRSLFYLLQEAPE--D-AQPAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWN-KVANVLF 98 (255)
T ss_dssp EEEEETTTTEEEEEEEECCCG--G-GCSCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCGG-GTSEEEE
T ss_pred EEECCCCCCcEEEEEEEEecC--C-CCCCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCccccc-ccCCEEE
Confidence 344544467778777554332 2 35689999999999987654 11 0 0001222 2367889
Q ss_pred EecCCCCCCchhHHhccc-ccCCcChHhHHHHHHH-HHHHcCCCCCCcEEEEEeChhHHHHHHHHhh----C-C-CceeE
Q 004368 551 AQIRGGGELGRQWYENGK-FLKKKNTFTDFIACAE-YLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM----R-P-DLFKA 622 (758)
Q Consensus 551 ~~~RG~g~~G~~~~~~~~-~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~----~-p-~~f~a 622 (758)
+|.+-+.|+...-..... ...-....+|+...++ |+...+.....++.|.|.||||..+..++.. . + =.+++
T Consensus 99 iDqPvGtGfSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~inLkG 178 (255)
T 1whs_A 99 LDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKG 178 (255)
T ss_dssp ECCSTTSTTCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred EecCCCCccCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCcccccce
Confidence 996544444321111000 0111233455555554 3444444456789999999999976555432 1 2 35799
Q ss_pred EEEcCCccchhh
Q 004368 623 AVAAVPFVDVLT 634 (758)
Q Consensus 623 ~v~~~~~~d~~~ 634 (758)
+++..|++|...
T Consensus 179 i~ign~~~d~~~ 190 (255)
T 1whs_A 179 FMVGNGLIDDYH 190 (255)
T ss_dssp EEEEEECCBHHH
T ss_pred EEecCCccCHHH
Confidence 999999998654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.011 Score=65.83 Aligned_cols=201 Identities=10% Similarity=-0.027 Sum_probs=106.1
Q ss_pred EEECC-----CCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCc--ceeEEE-e-cCCeEEEEEe-CC-----CC-
Q 004368 196 FQVSP-----DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV--TASVEW-A-GNEALVYITM-DE-----IL- 258 (758)
Q Consensus 196 ~~~SP-----DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~--~~~~~w-s-pDg~l~y~~~-~~-----~~- 258 (758)
+.+|. ||++| |..+..+ .+|.++|+++.+.... .+++. ..++++ + ||+..+|... .. ..
T Consensus 90 ~~~s~t~g~~DG~~l-fVnd~~~---~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFL-FMNDKAN---TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp EEEEEETTEEEEEEE-EEEETTT---TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred cccCCCCCCcCCCEE-EEEcCCC---CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 66776 99986 5565544 4799999999886553 34432 445777 5 9994335542 11 01
Q ss_pred -------CCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcc-----------------------
Q 004368 259 -------RPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKIT----------------------- 308 (758)
Q Consensus 259 -------~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~----------------------- 308 (758)
....+-.++..+.+....+.. ..++. .+..||||+++++++.....
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~V-gg~pd---~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~ 241 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLD---NCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI 241 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEE-SSCCC---CEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred ccccccccCceEEEEECCCCeEEEEEEe-CCCcc---ceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce
Confidence 112345666665421111111 12332 45689999999988743210
Q ss_pred ------------eEEEEEeCCC--CCc-eEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCC-------
Q 004368 309 ------------RFVFYLDVSK--PEE-LRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTS------- 366 (758)
Q Consensus 309 ------------~~l~~~d~~~--~~~-~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~------- 366 (758)
+.|-++|..+ +.. ...+.-...-....++|||+++|+. +.. . ..+.++|++...
T Consensus 242 ~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~-~~~-s--~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 242 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVA-GKL-S--PTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp HHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEE-CTT-S--SBEEEEEGGGHHHHHHSCC
T ss_pred eEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEe-CCC-C--CeEEEEECccccccccccc
Confidence 1367777776 331 1222111112233489999977654 443 2 467777775310
Q ss_pred -c-ceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 367 -E-TTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 367 -~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
. ...+....-......+.++++..+ +....-.+++.+|+++.
T Consensus 318 ~~~~~v~~~v~vG~gP~h~aF~~dG~a-Y~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 318 DPRSAVVAEPELGLGPLHTAFDGRGNA-YTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CGGGGEEECCBCCSCEEEEEECTTSEE-EEEETTTTEEEEEEHHH
T ss_pred CcccceEEEcCCCCCcceEEECCCCeE-EEEEecCCcEEEEEhhH
Confidence 0 011111112223456666665533 33333445688898874
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.082 Score=54.78 Aligned_cols=160 Identities=9% Similarity=0.057 Sum_probs=89.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCe---------------------EEEEEEEECCCCceeeccccC---cceeEEEecCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDE---------------------IYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE 247 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e---------------------~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg 247 (758)
.+.+++++|||+.++ .+..+.. ..+|+++|.++|+.......+ ...+++++|||
T Consensus 25 ~v~~va~d~~G~l~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 25 QVSGVALDSKNNLVI--FHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CEEEEEECTTCCEEE--EECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred CceEEEECCCCCEEE--EeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 467889999998764 3322210 026999999989876532111 24568999999
Q ss_pred eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeee--------cCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCC
Q 004368 248 ALVYITMDEILRPDKAWLHKLEADQSNDICLYHE--------KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP 319 (758)
Q Consensus 248 ~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~--------~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~ 319 (758)
.+|++... ...|++++..+... ....+.. ..-..-.+++++|++..|+++.. .....|++++.++.
T Consensus 103 ~l~v~d~~----~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~-~~~~~I~~~~~~g~ 176 (329)
T 3fvz_A 103 NYWVTDVA----LHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG-YCNSRIVQFSPSGK 176 (329)
T ss_dssp CEEEEETT----TTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC-SSCCEEEEECTTSC
T ss_pred CEEEEECC----CCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC-CCCCeEEEEcCCCC
Confidence 86554322 23577777644311 2222221 11112346789994344555432 23467888986543
Q ss_pred CceEEeecccc-------c----eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 320 EELRVLTPRVV-------G----VDTAASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 320 ~~~~~l~~~~~-------~----~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
. ...+..... . ....++++++.||+.... +.+|.+++.++
T Consensus 177 ~-~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~----~~~I~~~~~~~ 227 (329)
T 3fvz_A 177 F-VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE----NGRIQCFKTDT 227 (329)
T ss_dssp E-EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT----TTEEEEEETTT
T ss_pred E-EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC----CCEEEEEECCC
Confidence 2 333321111 0 112378887778776543 36888888873
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.016 Score=60.40 Aligned_cols=196 Identities=10% Similarity=0.097 Sum_probs=108.4
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccC------cceeEEEecCCeEEEEEeCCCCCCceEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG------VTASVEWAGNEALVYITMDEILRPDKAWL 265 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~------~~~~~~wspDg~l~y~~~~~~~~~~~v~~ 265 (758)
...+.+|||| + +|..+..+ ..|+++|+++++.... .... ...++++ .++++|..... ....|..
T Consensus 86 p~~i~~~~~g-~-lyv~~~~~---~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~---~~~~v~v 156 (328)
T 3dsm_A 86 PRYIHFLSDE-K-AYVTQIWD---YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWS---YQNRILK 156 (328)
T ss_dssp EEEEEEEETT-E-EEEEEBSC---SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECT---TCCEEEE
T ss_pred CcEEEEeCCC-e-EEEEECCC---CeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCC---CCCEEEE
Confidence 4466888999 4 46666322 3699999999987642 3332 3345677 33366544321 1336888
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCC--------cceEEEEEeCCCCCceEE-ee-c-cccceee
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK--------ITRFVFYLDVSKPEELRV-LT-P-RVVGVDT 334 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~--------~~~~l~~~d~~~~~~~~~-l~-~-~~~~~~~ 334 (758)
+++.++.. ........ .-.++.+++||+. ++..... ....|+++|.++++ +.. +. + ...-...
T Consensus 157 iD~~t~~~--~~~i~~g~--~p~~i~~~~dG~l-~v~~~~~~~~~~~~~~~~~v~~id~~t~~-v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 157 IDTETDKV--VDELTIGI--QPTSLVMDKYNKM-WTITDGGYEGSPYGYEAPSLYRIDAETFT-VEKQFKFKLGDWPSEV 230 (328)
T ss_dssp EETTTTEE--EEEEECSS--CBCCCEECTTSEE-EEEBCCBCTTCSSCBCCCEEEEEETTTTE-EEEEEECCTTCCCEEE
T ss_pred EECCCCeE--EEEEEcCC--CccceEEcCCCCE-EEEECCCccCCccccCCceEEEEECCCCe-EEEEEecCCCCCceeE
Confidence 88877632 21222111 1124678999984 4444322 13689999998876 332 21 1 1111233
Q ss_pred EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcce-eeecCCCCceeeeEEEe--CCEEEEEEEe--CCeeEEEEEEcCC
Q 004368 335 AASHRGNHFFITRRSDELFNSELLACPVDNTSETT-VLIPHRESVKLQDIQLF--IDHLAVYERE--GGLQKITTYRLPA 409 (758)
Q Consensus 335 ~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~--~~~l~~~~~~--~g~~~l~v~~l~~ 409 (758)
.++|||+.+|+. +. .|+++|.++..... .+++.. .....++.++ ++.+++.... .+...|.+|+.+
T Consensus 231 a~~~d~~~lyv~-~~------~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~- 301 (328)
T 3dsm_A 231 QLNGTRDTLYWI-NN------DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ- 301 (328)
T ss_dssp EECTTSCEEEEE-SS------SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-
T ss_pred EEecCCCEEEEE-cc------EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-
Confidence 489999988875 21 68899986532211 123221 2345667776 3566655311 234567777665
Q ss_pred CCCc
Q 004368 410 VGEP 413 (758)
Q Consensus 410 ~g~~ 413 (758)
|+.
T Consensus 302 -g~~ 304 (328)
T 3dsm_A 302 -GKL 304 (328)
T ss_dssp -CCE
T ss_pred -CCE
Confidence 553
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.069 Score=57.79 Aligned_cols=235 Identities=14% Similarity=0.115 Sum_probs=121.8
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+..+.+ +++.|+.... + ..|++||+.+++.... . -......+.| ||.++++...+. .+.++++.+
T Consensus 202 v~~~~~--~~~~l~s~s~-d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg----~i~iwd~~~ 268 (445)
T 2ovr_B 202 VRCMHL--HEKRVVSGSR-D----ATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF----MVKVWDPET 268 (445)
T ss_dssp EEEEEE--ETTEEEEEET-T----SEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS----CEEEEEGGG
T ss_pred EEEEEe--cCCEEEEEeC-C----CEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC----EEEEEECCC
Confidence 344444 4666654432 2 3699999999887643 1 1222444666 774444444322 477778766
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSD 350 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~ 350 (758)
+ +....+.... .....+.+ |+++|+..+.+ ..|.++|+.+++....+... ......++.+++.++..+.+
T Consensus 269 ~--~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~~d- 338 (445)
T 2ovr_B 269 E--TCLHTLQGHT-NRVYSLQF--DGIHVVSGSLD---TSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSGNAD- 338 (445)
T ss_dssp T--EEEEEECCCS-SCEEEEEE--CSSEEEEEETT---SCEEEEETTTCCEEEEECCC-CSCEEEEEEETTEEEEEETT-
T ss_pred C--cEeEEecCCC-CceEEEEE--CCCEEEEEeCC---CeEEEEECCCCCEEEEEcCC-cccEEEEEEeCCEEEEEeCC-
Confidence 5 2222333222 22334555 88887765543 34788898877623333322 22223466778866555433
Q ss_pred CCCCcEEEEEeCCCCCcceeeec-CCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceee-c--c
Q 004368 351 ELFNSELLACPVDNTSETTVLIP-HRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE-F--I 426 (758)
Q Consensus 351 ~~~~~~L~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~-~--p 426 (758)
+.|...|+.+......+.. ......+..+.++++.++ +...+|. +.+|++.. ++.+ ..+. + .
T Consensus 339 ----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-s~~~dg~--v~iwd~~~-~~~~------~~~~~~~~~ 404 (445)
T 2ovr_B 339 ----STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGT--VKLWDLKT-GEFI------RNLVTLESG 404 (445)
T ss_dssp ----SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEE-EEETTSE--EEEEETTT-CCEE------EEEEECTTG
T ss_pred ----CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEE-EEeCCCe--EEEEECCC-Ccee------eeeeccccC
Confidence 3577778765322222322 113345667777766554 5555664 77898874 3322 1111 0 0
Q ss_pred CcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCC
Q 004368 427 DPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDM 464 (758)
Q Consensus 427 ~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~ 464 (758)
.....+..+.+++++..+.....+-+.+..++.+|+..
T Consensus 405 ~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 405 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 11112333445555544444333334466777887754
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0082 Score=70.45 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=107.9
Q ss_pred EEeeEEECCC--CCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc---cCcceeEEEecC--CeEEEEEeCCCCCCceE
Q 004368 192 SVGCFQVSPD--NKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL---VGVTASVEWAGN--EALVYITMDEILRPDKA 263 (758)
Q Consensus 192 ~i~~~~~SPD--G~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~---~~~~~~~~wspD--g~l~y~~~~~~~~~~~v 263 (758)
.+..+.|||+ |++|+.+.. +| .|++||+.+++.... .. ......++|+|+ |.++++...+ ..|
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~-Dg----~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d----g~I 125 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSY-DG----KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD----GKV 125 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEET-TS----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT----SEE
T ss_pred ceEEEEecCCCCCCEEEEEeC-CC----eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC----CcE
Confidence 4778899998 998876654 33 599999998863221 11 233567999999 7544554432 257
Q ss_pred EEEEcCCCCCCcEEEeeecCCceeeEEEEcC-------------CCcEEEEEecCCcceEEEEEeCCCCC-ceE---Eee
Q 004368 264 WLHKLEADQSNDICLYHEKDDIYSLGLQASE-------------SKKFLFIASESKITRFVFYLDVSKPE-ELR---VLT 326 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~-------------Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~---~l~ 326 (758)
.++++.++.......+.. .......+.|+| |++.|+..+.+ + .|.++|+.++. ... .+.
T Consensus 126 ~vwdl~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d-g--~I~iwd~~~~~~~~~~~~~~~ 201 (753)
T 3jro_A 126 SVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-N--LVKIWKYNSDAQTYVLESTLE 201 (753)
T ss_dssp EEEECCSSSCCCCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETT-S--CEEEEEEETTTTEEEEEEEEC
T ss_pred EEEEeecCCCcceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECC-C--eEEEEeccCCcccceeeeeec
Confidence 888887653322333332 233344678898 58877665543 2 35566665543 112 222
Q ss_pred cccccee-eEEeec---CCEEEEEEcCCCCCCcEEEEEeCCCCCcc--eeeec-CCCCceeeeEEEeCC-EEEEEEEeCC
Q 004368 327 PRVVGVD-TAASHR---GNHFFITRRSDELFNSELLACPVDNTSET--TVLIP-HRESVKLQDIQLFID-HLAVYEREGG 398 (758)
Q Consensus 327 ~~~~~~~-~~~s~d---g~~l~~~s~~~~~~~~~L~~~~~~~~~~~--~~l~~-~~~~~~~~~~~~~~~-~l~~~~~~~g 398 (758)
.....+. ..|+|+ |+.|+..+. + +.|..+++.+.... ..+.. ......+..+.+..+ ..+++...+|
T Consensus 202 ~h~~~V~~l~~sp~~~~~~~l~s~s~-D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg 276 (753)
T 3jro_A 202 GHSDWVRDVAWSPTVLLRSYLASVSQ-D----RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (753)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEES-S----SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred CCCCcEEEEEeccCCCCCCEEEEEec-C----CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence 2223333 348999 565554443 3 24555665542111 11111 112223455666543 3344455566
Q ss_pred eeEEEEEEcCC
Q 004368 399 LQKITTYRLPA 409 (758)
Q Consensus 399 ~~~l~v~~l~~ 409 (758)
. +++|++..
T Consensus 277 ~--I~vwd~~~ 285 (753)
T 3jro_A 277 K--VTLWKENL 285 (753)
T ss_dssp C--EECCBCCS
T ss_pred E--EEEEecCC
Confidence 4 77888774
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.011 Score=62.67 Aligned_cols=60 Identities=18% Similarity=0.090 Sum_probs=42.0
Q ss_pred eEEECCCCCEEEEEEe-----CCCCeEEEEEEEECCCCceeec-ccc--------CcceeEEEecCCeEEEEEe
Q 004368 195 CFQVSPDNKLVAYAED-----TKGDEIYTVYVIDIETGTPVGK-PLV--------GVTASVEWAGNEALVYITM 254 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~-----~~G~e~~~l~v~dl~~g~~~~~-~~~--------~~~~~~~wspDg~l~y~~~ 254 (758)
.+.+||||++|..+.. ..|.....|.++|+.+++.... .+. .....+++||||+.+|+..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan 142 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEc
Confidence 5899999999876643 1233457899999999998763 333 1234689999995555543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.019 Score=59.09 Aligned_cols=146 Identities=13% Similarity=0.032 Sum_probs=79.0
Q ss_pred EEeeEEECC--CCCEEEEEEeCCCCeEEEEEEEECCCCce---------ee-c-cccCcceeEEEecC--CeEEEEEeCC
Q 004368 192 SVGCFQVSP--DNKLVAYAEDTKGDEIYTVYVIDIETGTP---------VG-K-PLVGVTASVEWAGN--EALVYITMDE 256 (758)
Q Consensus 192 ~i~~~~~SP--DG~~lAy~~~~~G~e~~~l~v~dl~~g~~---------~~-~-~~~~~~~~~~wspD--g~l~y~~~~~ 256 (758)
.+..+.|+| ||++|+.... +| .|++||+.+++. .. . ........++|+|+ +.++++...+
T Consensus 59 ~v~~~~~~~~~d~~~l~s~~~-dg----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 59 SIVAIDWASPEYGRIIASASY-DK----TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp CEEEEEECCGGGCSEEEEEET-TS----CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cEEEEEEcCCCCCCEEEEEcC-CC----eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence 477889999 7999886654 23 599999988742 21 1 11233566899999 8544444332
Q ss_pred CCCCceEEEEEcCCCCCCcEEEeee----------cCCceeeEEEEcCC---CcEEEEEecCCcceEEEEEeCCCCCceE
Q 004368 257 ILRPDKAWLHKLEADQSNDICLYHE----------KDDIYSLGLQASES---KKFLFIASESKITRFVFYLDVSKPEELR 323 (758)
Q Consensus 257 ~~~~~~v~~~~l~~~~~~~~~v~~~----------~~~~~~~~~~~S~D---g~~l~~~s~~~~~~~l~~~d~~~~~~~~ 323 (758)
..|.++++.++.......... ........+.|+|+ ++.++....+. .+.+.+...+. ..
T Consensus 134 ----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~~~~~~~-~~ 205 (351)
T 3f3f_A 134 ----GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ---AIIYQRGKDGK-LH 205 (351)
T ss_dssp ----CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE---EEEEEECTTSC-EE
T ss_pred ----CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC---cEEEEccCCCc-ee
Confidence 247788877653211111100 11122346789997 88777655432 22333444443 32
Q ss_pred E---eecccccee-eEEeecCC---EEEEEEcCC
Q 004368 324 V---LTPRVVGVD-TAASHRGN---HFFITRRSD 350 (758)
Q Consensus 324 ~---l~~~~~~~~-~~~s~dg~---~l~~~s~~~ 350 (758)
. +......+. ..|+|+|. .+++....+
T Consensus 206 ~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 206 VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp EEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred eeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 2 222222333 24899883 344444443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.31 E-value=0.15 Score=52.74 Aligned_cols=195 Identities=8% Similarity=0.040 Sum_probs=115.8
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceee-cccc--CcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLV--GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~-~~~~--~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
...+.|.+.+..|.| .|..+ ..|+.++++++.... .... ....++++.+.+ .||++-.. ...|.+.++
T Consensus 37 ~~~ld~d~~~~~lyw-~D~~~---~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~----~~~I~~~~~ 108 (318)
T 3sov_A 37 AAAVDFVFSHGLIYW-SDVSE---EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE----TNRIEVSNL 108 (318)
T ss_dssp EEEEEEEGGGTEEEE-EETTT---TEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETT----TTEEEEEET
T ss_pred cEEEEEEeCCCEEEE-EECCC---CcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECC----CCEEEEEEC
Confidence 446788988887744 45444 368889998774321 1111 123457887766 67665322 236888887
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccc-eeeEEeecCCEEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFIT 346 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~ 346 (758)
.+. ....+... ....-.+++..|++.+|+++... ....|+++++++.. .+.+.. .... ....++++++.||+.
T Consensus 109 dG~--~~~~l~~~-~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 109 DGS--LRKVLFWQ-ELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp TSC--SCEEEECS-SCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CCC--cEEEEEeC-CCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEE
Confidence 654 22333322 11222367788888888876432 34689999998754 444432 2111 123488889999987
Q ss_pred EcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
-.. +.+|+++++++. ..+.++... .....++.++++.++++... ...|..++..
T Consensus 184 D~~----~~~I~~~d~dG~-~~~~~~~~~-~~~P~glav~~~~lywtd~~--~~~V~~~~~~ 237 (318)
T 3sov_A 184 DAK----LNFIHKSNLDGT-NRQAVVKGS-LPHPFALTLFEDILYWTDWS--THSILACNKY 237 (318)
T ss_dssp ETT----TTEEEEEETTSC-SCEEEECSC-CSCEEEEEEETTEEEEEETT--TTEEEEEETT
T ss_pred ECC----CCEEEEEcCCCC-ceEEEecCC-CCCceEEEEeCCEEEEEecC--CCeEEEEECC
Confidence 433 468999998762 333344322 23456788899988877443 3456667664
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.14 Score=52.89 Aligned_cols=176 Identities=9% Similarity=0.039 Sum_probs=99.8
Q ss_pred EEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCC--CCcEEEeeecCCceeeEEEEc
Q 004368 218 TVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ--SNDICLYHEKDDIYSLGLQAS 293 (758)
Q Consensus 218 ~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~--~~~~~v~~~~~~~~~~~~~~S 293 (758)
.|+.+|+++++.... .......+++|.+++ .||++... ...|++.++.+.. .....+....- ..-.++++.
T Consensus 11 ~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~----~~~I~~~~~~g~~~~~~~~~~~~~~~-~~p~glavd 85 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS----QRMICSTQLDRAHGVSSYDTVISRDI-QAPDGLAVD 85 (316)
T ss_dssp SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT----TTEEEEEEC--------CEEEECSSC-SCCCEEEEE
T ss_pred eEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECC----CCcEEEEECCCCCCCcccEEEEeCCC-CCcCEEEEe
Confidence 488899988775543 111224568999877 77776432 3468888876510 11223332211 111256777
Q ss_pred CCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccc-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceee
Q 004368 294 ESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVL 371 (758)
Q Consensus 294 ~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l 371 (758)
+.++.|++... ....|.++++++.. .+.+.. .... ....++|.++.+|+.... .+.+|+++++++. ..+.+
T Consensus 86 ~~~~~ly~~d~--~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~---~~~~I~~~~~dG~-~~~~~ 158 (316)
T 1ijq_A 86 WIHSNIYWTDS--VLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWG---TPAKIKKGGLNGV-DIYSL 158 (316)
T ss_dssp TTTTEEEEEET--TTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECS---SSCEEEEEETTSC-CEEEE
T ss_pred ecCCeEEEEEC--CCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccC---CCCeEEEEcCCCC-CeEEE
Confidence 77778877543 34578899988654 444433 1111 122378888888876432 2368999998762 22234
Q ss_pred ecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcC
Q 004368 372 IPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 372 ~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+... -....++.++ ++.||+.-. +..+|.+++++
T Consensus 159 ~~~~-~~~P~gla~d~~~~~lY~~D~--~~~~I~~~d~d 194 (316)
T 1ijq_A 159 VTEN-IQWPNGITLDLLSGRLYWVDS--KLHSISSIDVN 194 (316)
T ss_dssp ECSS-CSCEEEEEEETTTTEEEEEET--TTTEEEEEETT
T ss_pred EECC-CCCceEEEEeccCCEEEEEEC--CCCeEEEEecC
Confidence 3332 2235577777 567776543 34468888877
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.038 Score=55.00 Aligned_cols=192 Identities=13% Similarity=0.131 Sum_probs=99.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC--cceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
...++.++|||+ |.++.+..+ ..|+++|..++........+ ...++++++||.++.... ...|++++..
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-----~~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMY---GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-----NNRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSS---CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-----TTEEEEECTT
T ss_pred CccceEECCCCC-EEEEccCCC---CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-----CCEEEEEeCC
Confidence 456778999998 333144332 36888888766544322222 245689999988655543 2358877765
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-ccc-eeeEEeecCCEEEEEE
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHFFITR 347 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-~~~-~~~~~s~dg~~l~~~s 347 (758)
+.. ...+.........++.+++||+ |++... ....|++++..+.. ....... ... ....++++|+ +|+..
T Consensus 96 ~~~---~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~~~~g~-l~v~~ 167 (270)
T 1rwi_B 96 SNN---QTVLPFDGLNYPEGLAVDTQGA-VYVADR--GNNRVVKLAAGSKT-QTVLPFTGLNDPDGVAVDNSGN-VYVTD 167 (270)
T ss_dssp CSC---CEECCCCSCSSEEEEEECTTCC-EEEEEG--GGTEEEEECTTCCS-CEECCCCSCCSCCCEEECTTCC-EEEEE
T ss_pred Cce---EeeeecCCcCCCcceEECCCCC-EEEEEC--CCCEEEEEECCCce-eEeeccccCCCceeEEEeCCCC-EEEEE
Confidence 442 2222211112234677899997 555432 23468888765543 2222111 111 1234778886 66664
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcC
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~ 408 (758)
.. +..|++++.++. ............+.++.++.+ .+++....++ .+.+++.+
T Consensus 168 ~~----~~~i~~~~~~~~--~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~--~v~~~~~~ 221 (270)
T 1rwi_B 168 TD----NNRVVKLEAESN--NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN--QVVKLLAG 221 (270)
T ss_dssp GG----GTEEEEECTTTC--CEEECCCSSCCSEEEEEECTTCCEEEEETTTS--CEEEECTT
T ss_pred CC----CCEEEEEecCCC--ceEeecccCCCCceEEEECCCCCEEEEECCCC--cEEEEcCC
Confidence 43 357888887652 122221111134567777766 5554443333 36666554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.031 Score=55.67 Aligned_cols=190 Identities=12% Similarity=0.140 Sum_probs=103.3
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC--cceeEEEecCCeEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
...+.++|||+ | |..+.++ .|+++|.+++........+ ...++++++||.+|+.... ...|++++.++
T Consensus 69 p~~i~~~~~g~-l-~v~~~~~----~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~~i~~~~~~~ 138 (270)
T 1rwi_B 69 PQGLAVDGAGT-V-YVTDFNN----RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRG----NNRVVKLAAGS 138 (270)
T ss_dssp CCCEEECTTCC-E-EEEETTT----EEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGG----GTEEEEECTTC
T ss_pred cceeEECCCCC-E-EEEcCCC----EEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECC----CCEEEEEECCC
Confidence 44678999999 3 4444322 6889998876654332222 2456899999886655432 22577776544
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccce-eeEEeecCCEEEEEEc
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGV-DTAASHRGNHFFITRR 348 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~~-~~~~s~dg~~l~~~s~ 348 (758)
. ... ...........++.+++||+ |++... ....|+++|.++.. ...... ..... ...++++| .+|+...
T Consensus 139 ~--~~~-~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~g-~l~v~~~ 210 (270)
T 1rwi_B 139 K--TQT-VLPFTGLNDPDGVAVDNSGN-VYVTDT--DNNRVVKLEAESNN-QVVLPFTDITAPWGIAVDEAG-TVYVTEH 210 (270)
T ss_dssp C--SCE-ECCCCSCCSCCCEEECTTCC-EEEEEG--GGTEEEEECTTTCC-EEECCCSSCCSEEEEEECTTC-CEEEEET
T ss_pred c--eeE-eeccccCCCceeEEEeCCCC-EEEEEC--CCCEEEEEecCCCc-eEeecccCCCCceEEEECCCC-CEEEEEC
Confidence 3 122 21111111223577899998 555432 23578999987754 322211 11111 22367777 5777655
Q ss_pred CCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcC
Q 004368 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~ 408 (758)
.+ .+|++++.++. ....+.......+.++.++.+ .+++....+ ..|.+++++
T Consensus 211 ~~----~~v~~~~~~~~--~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~--~~v~~~~~~ 263 (270)
T 1rwi_B 211 NT----NQVVKLLAGST--TSTVLPFTGLNTPLAVAVDSDRTVYVADRGN--DRVVKLTSL 263 (270)
T ss_dssp TT----SCEEEECTTCS--CCEECCCCSCSCEEEEEECTTCCEEEEEGGG--TEEEEECCC
T ss_pred CC----CcEEEEcCCCC--cceeeccCCCCCceeEEECCCCCEEEEECCC--CEEEEEcCC
Confidence 43 46888887652 222222222224566777654 455444333 357777665
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00033 Score=76.28 Aligned_cols=133 Identities=11% Similarity=0.084 Sum_probs=75.5
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCCh----------------HHHHHHHcCcEEEEEec-CC
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS----------------SRLSLLDRGFIFAIAQI-RG 555 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~----------------~~~~l~~~G~~v~~~~~-RG 555 (758)
..++..+..|++..+. . ....|++|++|||||.+...++.. ....|. +-..++.+|. +|
T Consensus 28 v~~~~~lfy~f~~s~~--~-~~~~Pl~lwlnGGPG~Ss~~g~~~e~GP~~~~~~~~~l~~n~~sw~-~~~~~lfiDqP~G 103 (452)
T 1ivy_A 28 SSGSKHLHYWFVESQK--D-PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWN-LIANVLYLESPAG 103 (452)
T ss_dssp CSTTEEEEEEEECCSS--C-GGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGG-GSSEEEEECCSTT
T ss_pred eCCCCeEEEEEEEcCC--C-CCCCCEEEEECCCCcHHHHHHHHHhcCCcEEeCCCceeeeCCCccc-ccccEEEEecCCC
Confidence 3456777776443322 1 245799999999999764321000 001122 3467899996 55
Q ss_pred CCCCchhHHhccccc-CCcChHhHHHH-HHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHh----hCCCceeEEEEcCCc
Q 004368 556 GGELGRQWYENGKFL-KKKNTFTDFIA-CAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN----MRPDLFKAAVAAVPF 629 (758)
Q Consensus 556 ~g~~G~~~~~~~~~~-~~~~~~~D~~~-~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~----~~p~~f~a~v~~~~~ 629 (758)
.| +... ...... ......+|+.. ..+|+.........++.|.|.||||..+..++. ..+-.++++++..|+
T Consensus 104 tG-fS~~--~~~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~l~g~~ign~~ 180 (452)
T 1ivy_A 104 VG-FSYS--DDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGL 180 (452)
T ss_dssp ST-TCEE--SSCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCC
T ss_pred CC-cCCc--CCCCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccccceEEecCCc
Confidence 44 3221 100000 11123344433 445565543445689999999999995444333 334568999999999
Q ss_pred cch
Q 004368 630 VDV 632 (758)
Q Consensus 630 ~d~ 632 (758)
+|.
T Consensus 181 ~d~ 183 (452)
T 1ivy_A 181 SSY 183 (452)
T ss_dssp SBH
T ss_pred cCh
Confidence 884
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.21 E-value=0.2 Score=53.55 Aligned_cols=195 Identities=5% Similarity=0.005 Sum_probs=111.2
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCc----eeeccccC--cceeEEEecCC-eEEEEEeCCCCCCceEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT----PVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~----~~~~~~~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~~ 265 (758)
..++.|++++..|.|+ |... ..|+.++++++. .......+ ...+++..+.+ .||++-.. ...|.+
T Consensus 114 ~~~l~~d~~~~~lyws-D~~~---~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~----~~~I~~ 185 (400)
T 3p5b_L 114 VVALDTEVASNRIYWS-DLSQ---RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV----LGTVSV 185 (400)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETT----TTEEEE
T ss_pred ceEEeeeeccCceEEE-ecCC---CeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECC----CCeEEE
Confidence 4577899988887554 4433 258888887632 22211111 23457777755 67665322 236777
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccc-cc-eeeEEeecCCEE
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-VG-VDTAASHRGNHF 343 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~-~~-~~~~~s~dg~~l 343 (758)
.++.+. ....+.... ...-.+++..|.+.+|+++... ....|+++++++.. .+.+.... .. ....+++++++|
T Consensus 186 ~~~~g~--~~~~l~~~~-~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~-~~~~~~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 186 ADTKGV--KRKTLFREN-GSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp ECTTTC--SEEEEEECS-SCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEE
T ss_pred EeCCCC--ceEEEEeCC-CCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCc-cEEEEECCCCceEEEEEEeCCCEE
Confidence 777654 233333321 1112367788988888886532 23579999998765 44443321 11 123488889999
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCcceeeecC-CCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEc
Q 004368 344 FITRRSDELFNSELLACPVDNTSETTVLIPH-RESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l 407 (758)
|+.-.. +.+|.++++++. ..+.++.. ..-....+++++++++|++...++ .|..++.
T Consensus 261 Y~aD~~----~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~--~V~~~~~ 318 (400)
T 3p5b_L 261 YWVDSK----LHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINE--AIFSANR 318 (400)
T ss_dssp EEEETT----TTEEEEEETTSC-CCEEEEECSSTTSSEEEEEEETTEEEEEESSSC--SEEEEES
T ss_pred EEEECC----CCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCC--eEEEEEc
Confidence 887432 468999998763 23334332 112234578889998887764333 3556653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.17 Score=50.88 Aligned_cols=194 Identities=8% Similarity=0.030 Sum_probs=99.3
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc-------CcceeEEEe-cCCeEEEEEeCCCCCCceE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV-------GVTASVEWA-GNEALVYITMDEILRPDKA 263 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~-------~~~~~~~ws-pDg~l~y~~~~~~~~~~~v 263 (758)
....+.++|||+. |..+... ..|+++|.++......... .....++++ ++|.++.+.... ...|
T Consensus 31 ~p~~v~~~~~g~l--~v~~~~~---~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~---~~~i 102 (286)
T 1q7f_A 31 EPSGVAVNAQNDI--IVADTNN---HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP---THQI 102 (286)
T ss_dssp CEEEEEECTTCCE--EEEEGGG---TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG---GCEE
T ss_pred CCceEEECCCCCE--EEEECCC---CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC---CCEE
Confidence 4567789999984 3333222 3688999874433222111 123457884 666776654321 2347
Q ss_pred EEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec--cccce-eeEEeecC
Q 004368 264 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP--RVVGV-DTAASHRG 340 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~--~~~~~-~~~~s~dg 340 (758)
++++. ++ +....+.........++.+++||+ |++... ....|+++|.++.. ...+.. ..... ...++++|
T Consensus 103 ~~~d~-~g--~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~~g~~-~~~~~~~~~~~~p~~i~~~~~g 175 (286)
T 1q7f_A 103 QIYNQ-YG--QFVRKFGATILQHPRGVTVDNKGR-IIVVEC--KVMRVIIFDQNGNV-LHKFGCSKHLEFPNGVVVNDKQ 175 (286)
T ss_dssp EEECT-TS--CEEEEECTTTCSCEEEEEECTTSC-EEEEET--TTTEEEEECTTSCE-EEEEECTTTCSSEEEEEECSSS
T ss_pred EEECC-CC--cEEEEecCccCCCceEEEEeCCCC-EEEEEC--CCCEEEEEcCCCCE-EEEeCCCCccCCcEEEEECCCC
Confidence 76663 22 222223222222234678899997 454432 23578889876432 333321 11111 22377877
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCC-CCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcC
Q 004368 341 NHFFITRRSDELFNSELLACPVDNTSETTVLIPHR-ESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~ 408 (758)
+ +|+.... +..|++++.++ .....+... ....+.++.++.+ .+++....++ ..|.+++.+
T Consensus 176 ~-l~v~~~~----~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~-~~i~~~~~~ 237 (286)
T 1q7f_A 176 E-IFISDNR----AHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNN-FNLTIFTQD 237 (286)
T ss_dssp E-EEEEEGG----GTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS-CEEEEECTT
T ss_pred C-EEEEECC----CCEEEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC-EEEEEECCC
Confidence 6 6665433 35788888754 222223222 1134567777765 4444433332 257777644
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0046 Score=63.67 Aligned_cols=156 Identities=14% Similarity=0.074 Sum_probs=86.0
Q ss_pred EeeEEECCCCCEEEEEEeCC-C-------------CeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCC-
Q 004368 193 VGCFQVSPDNKLVAYAEDTK-G-------------DEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDE- 256 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~-G-------------~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~- 256 (758)
+..+.++|||+..+ .|.. | .....|+.+|.++|+...........+++|+||| .+|+.....
T Consensus 133 ~~~i~~d~dG~l~~--td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~ 210 (305)
T 3dr2_A 133 PNDLIVARDGAIWF--TDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQ 210 (305)
T ss_dssp CCCEEECTTSCEEE--ECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC-
T ss_pred CCCEEECCCCCEEE--eCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCc
Confidence 34678999998543 2210 1 1136799999988876553311124568999999 455443221
Q ss_pred CCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEE
Q 004368 257 ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAA 336 (758)
Q Consensus 257 ~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 336 (758)
......|+++++..+......++.......-.++.+++||+ |++.. . ..|++++.++.. ...+.....-....|
T Consensus 211 ~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~-~---~gv~~~~~~g~~-~~~~~~~~~~~~~~f 284 (305)
T 3dr2_A 211 GHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSS-G---TGVCVFDSDGQL-LGHIPTPGTASNCTF 284 (305)
T ss_dssp --CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECC-S---SEEEEECTTSCE-EEEEECSSCCCEEEE
T ss_pred CCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEec-C---CcEEEECCCCCE-EEEEECCCceeEEEE
Confidence 01124688888764421111222211111122567889998 55543 2 248999986543 333332221123347
Q ss_pred eecCCEEEEEEcCCCCCCcEEEEEeC
Q 004368 337 SHRGNHFFITRRSDELFNSELLACPV 362 (758)
Q Consensus 337 s~dg~~l~~~s~~~~~~~~~L~~~~~ 362 (758)
+++++.||+.++. .|+++++
T Consensus 285 ~~d~~~L~it~~~------~l~~~~~ 304 (305)
T 3dr2_A 285 DQAQQRLFITGGP------CLWMLPL 304 (305)
T ss_dssp CTTSCEEEEEETT------EEEEEEC
T ss_pred eCCCCEEEEEcCC------eEEEEEC
Confidence 7889989887763 4776654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.084 Score=52.82 Aligned_cols=199 Identities=10% Similarity=0.062 Sum_probs=107.1
Q ss_pred eeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCC
Q 004368 239 ASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (758)
Q Consensus 239 ~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~ 318 (758)
.+++|+|||.+|.++... ....|...++.+++... ...-+...+..+ ++.+|+.|++... ....++++|.++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~--~~s~v~~iD~~tg~v~~--~i~l~~~~fgeG--i~~~g~~lyv~t~--~~~~v~viD~~t 95 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLY--GRSSVRQVALQTGKVEN--IHKMDDSYFGEG--LTLLNEKLYQVVW--LKNIGFIYDRRT 95 (266)
T ss_dssp EEEEECSTTEEEEEECST--TTCEEEEEETTTCCEEE--EEECCTTCCEEE--EEEETTEEEEEET--TCSEEEEEETTT
T ss_pred ccEEEeCCCeEEEECCCC--CCCEEEEEECCCCCEEE--EEecCCCcceEE--EEEeCCEEEEEEe--cCCEEEEEECCC
Confidence 569999998655544321 23468999998874322 221122223333 3445778777643 446789999988
Q ss_pred CCceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceee-ecCC--CCceeeeEEEeCCEEEEEEE
Q 004368 319 PEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVL-IPHR--ESVKLQDIQLFIDHLAVYER 395 (758)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l-~~~~--~~~~~~~~~~~~~~l~~~~~ 395 (758)
.+....+.-. ......+++||+++|+ ++ + ..+|..+|.++......+ +... .-..+..+.+.++.+++..
T Consensus 96 ~~v~~~i~~g-~~~g~glt~Dg~~l~v-s~-g---s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~- 168 (266)
T 2iwa_A 96 LSNIKNFTHQ-MKDGWGLATDGKILYG-SD-G---TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANI- 168 (266)
T ss_dssp TEEEEEEECC-SSSCCEEEECSSSEEE-EC-S---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE-
T ss_pred CcEEEEEECC-CCCeEEEEECCCEEEE-EC-C---CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEec-
Confidence 6522233222 1223447889998885 55 2 258999998763322222 2211 1112446666666665433
Q ss_pred eCCeeEEEEEEcCCCCCccccccCCceeeccCc----------c-cccCCCCcccCCcEEEEEEecCCCCCEEEEEECC
Q 004368 396 EGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDP----------V-YSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMD 463 (758)
Q Consensus 396 ~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~----------~-~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~ 463 (758)
.....|.+++... |+.+ ..+.++.. . ....+...++++++++++-..+ +.+|.+++.
T Consensus 169 -~~~~~V~vID~~t-g~V~------~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~---~~v~~i~l~ 236 (266)
T 2iwa_A 169 -WQTDCIARISAKD-GTLL------GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW---PKLFEIKLH 236 (266)
T ss_dssp -TTSSEEEEEETTT-CCEE------EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC---SEEEEEEEE
T ss_pred -CCCCeEEEEECCC-CcEE------EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC---CeEEEEEEe
Confidence 3345688888763 4322 23333210 0 0112345567777776655433 567777654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0074 Score=61.58 Aligned_cols=152 Identities=13% Similarity=0.087 Sum_probs=85.7
Q ss_pred EeeEEECCCCCEEEEEEeCC-CC-------------eEEEEEEEECCCCceeecc-ccCcceeEEEecCCeEEEEEeCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTK-GD-------------EIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNEALVYITMDEI 257 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~-G~-------------e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg~l~y~~~~~~ 257 (758)
+..+.++|||+.++ .+.. |. ....|+.++.+ |+..... ......+++|+|||+++++...
T Consensus 117 ~~~i~~d~~G~l~v--td~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~-- 191 (296)
T 3e5z_A 117 PNDVCLAPDGSLWF--SDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTG-- 191 (296)
T ss_dssp CCCEEECTTSCEEE--EECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETT--
T ss_pred CCCEEECCCCCEEE--ECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCC--
Confidence 34678999998544 2210 10 12368888887 6554321 1122456999999954444322
Q ss_pred CCCceEEEEEcC-CCCC-CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeE
Q 004368 258 LRPDKAWLHKLE-ADQS-NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTA 335 (758)
Q Consensus 258 ~~~~~v~~~~l~-~~~~-~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 335 (758)
...|+++++. ++.. ....++ ......-.++.+++||+ |++.. ...|++++.++.. ...+.....-....
T Consensus 192 --~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~-l~v~~----~~~v~~~~~~g~~-~~~~~~~~~~~~~~ 262 (296)
T 3e5z_A 192 --DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGL-IWASA----GDGVHVLTPDGDE-LGRVLTPQTTSNLC 262 (296)
T ss_dssp --TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSC-EEEEE----TTEEEEECTTSCE-EEEEECSSCCCEEE
T ss_pred --CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCC-EEEEc----CCeEEEECCCCCE-EEEEECCCCceeEE
Confidence 2368888876 2211 112344 22222223578899997 44444 3568999987432 33443222212233
Q ss_pred E-eecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 336 A-SHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 336 ~-s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
+ +++++.||+.++. .|++++..+
T Consensus 263 f~~~d~~~L~v~t~~------~l~~~~~~~ 286 (296)
T 3e5z_A 263 FGGPEGRTLYMTVST------EFWSIETNV 286 (296)
T ss_dssp EESTTSCEEEEEETT------EEEEEECSC
T ss_pred EECCCCCEEEEEcCC------eEEEEEccc
Confidence 6 5788888887653 588888765
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.12 E-value=0.17 Score=54.08 Aligned_cols=177 Identities=9% Similarity=0.031 Sum_probs=101.7
Q ss_pred EEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCC--CCcEEEeeecCCceeeEEEE
Q 004368 217 YTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ--SNDICLYHEKDDIYSLGLQA 292 (758)
Q Consensus 217 ~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~--~~~~~v~~~~~~~~~~~~~~ 292 (758)
..|+.++++++..... .......+++|.+.+ .||++-.. ..+|++.++.+.. .....+.... ...-.++++
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~----~~~I~~~~~~g~~~~~~~~~~~~~~-~~~p~glav 166 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS----QRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAV 166 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETT----TTEEEEEEC------CCCEEEECSS-CSCEEEEEE
T ss_pred ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecC----CCeEEEEEcccCCCCCcceEEEeCC-CCCcccEEE
Confidence 4688999988765543 112224568999876 77766432 2358888876421 1223333321 112235667
Q ss_pred cCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccc-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCccee
Q 004368 293 SESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV 370 (758)
Q Consensus 293 S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~ 370 (758)
.+.++.|++.... ...|+++++++.. .+.+.. .... ....++|.++.||+.-... +.+|+++++++. ....
T Consensus 167 D~~~~~lY~~d~~--~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~---~~~I~~~~~dG~-~~~~ 239 (400)
T 3p5b_L 167 DWIHSNIYWTDSV--LGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---PAKIKKGGLNGV-DIYS 239 (400)
T ss_dssp ETTTTEEEEEETT--TTEEEEECTTTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSS---SCCEEEEETTSC-SCEE
T ss_pred EecCCceEEEECC--CCeEEEEeCCCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCC---CCEEEEEeCCCC-ccEE
Confidence 7777778776433 3578999998765 444433 2111 1234788888888764322 368999998763 2333
Q ss_pred eecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcC
Q 004368 371 LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 371 l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
++... -....++.++ ++.||+.-. +...|+.++++
T Consensus 240 ~~~~~-l~~P~glavd~~~~~lY~aD~--~~~~I~~~d~d 276 (400)
T 3p5b_L 240 LVTEN-IQWPNGITLDLLSGRLYWVDS--KLHSISSIDVN 276 (400)
T ss_dssp EECSS-CSCEEEEEEETTTTEEEEEET--TTTEEEEEETT
T ss_pred EEECC-CCceEEEEEEeCCCEEEEEEC--CCCEEEEEeCC
Confidence 44332 2245667776 567766543 44568888877
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.014 Score=65.05 Aligned_cols=194 Identities=10% Similarity=0.102 Sum_probs=104.2
Q ss_pred EEeeEEECCC------CCEEEEEEeCCCCeEEEEEEEECCCCcee-----e-----cccc---CcceeEEEecCCeEEEE
Q 004368 192 SVGCFQVSPD------NKLVAYAEDTKGDEIYTVYVIDIETGTPV-----G-----KPLV---GVTASVEWAGNEALVYI 252 (758)
Q Consensus 192 ~i~~~~~SPD------G~~lAy~~~~~G~e~~~l~v~dl~~g~~~-----~-----~~~~---~~~~~~~wspDg~l~y~ 252 (758)
.+..++|||+ |++||-+.. +| +|++||+.+++.. . ..+. .....++|++++.|+ +
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~-Dg----tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~la-s 282 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQ-EG----TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVV-C 282 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEET-TS----CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEE-E
T ss_pred cEEEEEECCCCCCCCCCceEEEEec-CC----eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEE-E
Confidence 3667899997 567775543 33 6999999876421 0 0111 235669999876554 4
Q ss_pred EeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEE--EEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc
Q 004368 253 TMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL--QASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV 330 (758)
Q Consensus 253 ~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~--~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~ 330 (758)
...++ .|.++++.++.. ....+..... ...++ .+++||..++++....+ .|.++|+.+++....+.....
T Consensus 283 gs~Dg----tV~lWD~~~~~~-~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~--tvklWD~~~~~~~~~~~~~~~ 354 (524)
T 2j04_B 283 GFKNG----FVAEFDLTDPEV-PSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDG--YFYIFNPKDIATTKTTVSRFR 354 (524)
T ss_dssp EETTS----EEEEEETTBCSS-CSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTS--EEEEECGGGHHHHCEEEEECS
T ss_pred EeCCC----EEEEEECCCCCC-ceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCC--eEEEEECCCCCcccccccccc
Confidence 43322 588888876522 2223333322 23345 57899844444444333 356667766542223332222
Q ss_pred --ce-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEE
Q 004368 331 --GV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYR 406 (758)
Q Consensus 331 --~~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~ 406 (758)
.+ ...|+|+++.++.. ..+ ..+...|+........+..+.. .+..+++..+ .+++....++. +++|+
T Consensus 355 ~~~v~~v~fsp~~~~l~s~-~~d----~tv~lwd~~~~~~~~~l~gH~~--~V~sva~Sp~g~~l~Sgs~Dgt--v~lwd 425 (524)
T 2j04_B 355 GSNLVPVVYCPQIYSYIYS-DGA----SSLRAVPSRAAFAVHPLVSRET--TITAIGVSRLHPMVLAGSADGS--LIITN 425 (524)
T ss_dssp CCSCCCEEEETTTTEEEEE-CSS----SEEEEEETTCTTCCEEEEECSS--CEEEEECCSSCCBCEEEETTTE--EECCB
T ss_pred cCcccceEeCCCcCeEEEe-CCC----CcEEEEECcccccceeeecCCC--ceEEEEeCCCCCeEEEEECCCE--EEEEe
Confidence 12 23589999875433 322 2466667765322233444443 3445555443 23456666775 66776
Q ss_pred cC
Q 004368 407 LP 408 (758)
Q Consensus 407 l~ 408 (758)
+.
T Consensus 426 ~~ 427 (524)
T 2j04_B 426 AA 427 (524)
T ss_dssp SC
T ss_pred ch
Confidence 54
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00081 Score=68.71 Aligned_cols=96 Identities=11% Similarity=-0.062 Sum_probs=61.1
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
+..|.||++||..+.. ..|......|. +.|+.+|.++.. ...+++++.+.+..++..-. .
T Consensus 22 ~~~~~l~~~hg~~~~~--~~~~~~~~~L~---~~v~~~d~~~~~--------------~~~~~~~~a~~~~~~i~~~~-~ 81 (283)
T 3tjm_A 22 SSERPLFLVHPIEGST--TVFHSLASRLS---IPTYGLQCTRAA--------------PLDSIHSLAAYYIDCIRQVQ-P 81 (283)
T ss_dssp SSSCCEEEECCTTCCS--GGGHHHHHHCS---SCEEEECCCTTS--------------CCSCHHHHHHHHHHHHTTTC-C
T ss_pred CCCCeEEEECCCCCCH--HHHHHHHHhcC---ceEEEEecCCCC--------------CCCCHHHHHHHHHHHHHHhC-C
Confidence 3456788899966543 23444444443 899999986421 12345555554433333321 2
Q ss_pred CCcEEEEEeChhHHHHHHHHhhC---CCcee---EEEEcCCc
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMR---PDLFK---AAVAAVPF 629 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~---p~~f~---a~v~~~~~ 629 (758)
.+++.++|||+||.++..++.+. |+.+. .+|+..+.
T Consensus 82 ~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~~ 123 (283)
T 3tjm_A 82 EGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGS 123 (283)
T ss_dssp SSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESCC
T ss_pred CCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcCC
Confidence 36899999999999998888755 77787 77766543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.12 Score=51.54 Aligned_cols=155 Identities=11% Similarity=0.043 Sum_probs=92.6
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc-CcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~-~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
...+.++|+++.|.++ +... ..|.++++++...... ... ....+++++|++ .+|++... .....|++.++.
T Consensus 81 p~~ia~d~~~~~lyv~-d~~~---~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~--~~~~~I~~~~~d 154 (267)
T 1npe_A 81 PEGIALDHLGRTIFWT-DSQL---DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN--RDNPKIETSHMD 154 (267)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC--SSSCEEEEEETT
T ss_pred ccEEEEEecCCeEEEE-ECCC---CEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECC--CCCcEEEEEecC
Confidence 4677899998887554 4333 3688999976543322 111 224568999976 66665422 123468888876
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcC
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRS 349 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~ 349 (758)
.. ....+.. .....-.++++++|+++|++.... ...|+++|+++.. .+.+.... ..-..+..+++.+|+....
T Consensus 155 g~--~~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~--~~~I~~~~~~g~~-~~~~~~~~-~~P~gi~~d~~~lyva~~~ 227 (267)
T 1npe_A 155 GT--NRRILAQ-DNLGLPNGLTFDAFSSQLCWVDAG--THRAECLNPAQPG-RRKVLEGL-QYPFAVTSYGKNLYYTDWK 227 (267)
T ss_dssp SC--CCEEEEC-TTCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTEEE-EEEEEECC-CSEEEEEEETTEEEEEETT
T ss_pred CC--CcEEEEE-CCCCCCcEEEEcCCCCEEEEEECC--CCEEEEEecCCCc-eEEEecCC-CCceEEEEeCCEEEEEECC
Confidence 43 2222322 122234467899999998876543 4579999997654 33333221 1112356678888875443
Q ss_pred CCCCCcEEEEEeCCC
Q 004368 350 DELFNSELLACPVDN 364 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~ 364 (758)
+.+|++++.++
T Consensus 228 ----~~~v~~~d~~~ 238 (267)
T 1npe_A 228 ----TNSVIAMDLAI 238 (267)
T ss_dssp ----TTEEEEEETTT
T ss_pred ----CCeEEEEeCCC
Confidence 35799999865
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.012 Score=63.02 Aligned_cols=110 Identities=15% Similarity=0.054 Sum_probs=65.1
Q ss_pred EECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec----cccC---cceeEEEec--------CCeEEEEEeCCCCCCc
Q 004368 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK----PLVG---VTASVEWAG--------NEALVYITMDEILRPD 261 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~----~~~~---~~~~~~wsp--------Dg~l~y~~~~~~~~~~ 261 (758)
.++|++++||-... ..+|++||+++++.... .+.+ .+..++|+| ||+++.+..++.
T Consensus 96 ~~~~~~~~las~~~-----d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~---- 166 (393)
T 4gq1_A 96 SSPVYSLFLACVCQ-----DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC---- 166 (393)
T ss_dssp -CCEEEEEEEEEET-----TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS----
T ss_pred ecCCCCCEEEEEeC-----CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC----
Confidence 45677777775543 24689999988865421 2222 356689998 776666655432
Q ss_pred eEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 262 KAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 262 ~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
.|.++++.++. ....+... .....++.|+|++..++++....+ .|.++|+.++.
T Consensus 167 tv~~Wd~~~~~--~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~d~--~v~~wd~~t~~ 220 (393)
T 4gq1_A 167 TLIIWRLTDEG--PILAGYPL-SSPGISVQFRPSNPNQLIVGERNG--NIRIFDWTLNL 220 (393)
T ss_dssp EEEEEEEETTE--EEEEEEEC-SSCEEEEEEETTEEEEEEEEETTS--EEEEEETTCCC
T ss_pred eEEEEECCCCc--eeeeecCC-CCCcEEEEECCCCCceEEecCCCC--EEEEEECCCCc
Confidence 46777776542 22222222 223457899999976665554433 35666776653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.04 E-value=0.31 Score=50.28 Aligned_cols=177 Identities=12% Similarity=0.057 Sum_probs=102.4
Q ss_pred EEEEEEEECCCCce-eeccccCc--ceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEE
Q 004368 216 IYTVYVIDIETGTP-VGKPLVGV--TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQ 291 (758)
Q Consensus 216 ~~~l~v~dl~~g~~-~~~~~~~~--~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~ 291 (758)
...|+.+|++++.. ....+.+. ...+.|.+.+ .||++-.. ..+|++.++.+......++...-. .-.+++
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~----~~~I~r~~~~g~~~~~~~~~~~l~--~p~gla 85 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS----EEAIKRTEFNKTESVQNVVVSGLL--SPDGLA 85 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETT----TTEEEEEETTSSSCCCEEEEECCS--CCCEEE
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECC----CCcEEEEEccCCCceEEEEcCCCC--CccEEE
Confidence 36799999988641 11122222 3458999876 77766432 246888888665322222322211 112566
Q ss_pred EcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccc-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcce
Q 004368 292 ASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETT 369 (758)
Q Consensus 292 ~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~ 369 (758)
+.+.++.|+++.. ....|+++++++.. .+.+.. .... ....++|.++.||+.-.. .+.+|+++++++. ...
T Consensus 86 vd~~~g~ly~~d~--~~~~I~~~~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~td~~---~~~~I~r~~~dG~-~~~ 158 (318)
T 3sov_A 86 CDWLGEKLYWTDS--ETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWG---EVPKIERAGMDGS-SRF 158 (318)
T ss_dssp EETTTTEEEEEET--TTTEEEEEETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEEEECS---SSCEEEEEETTSC-SCE
T ss_pred EEcCCCeEEEEEC--CCCEEEEEECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEEEecC---CCCEEEEEEcCCC-CeE
Confidence 7777778877643 33578899998754 444432 2111 122477888888876432 2478999998762 233
Q ss_pred eeecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcC
Q 004368 370 VLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 370 ~l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
.++... -....++.++ ++.||+.-. +...|+.++++
T Consensus 159 ~~~~~~-l~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~d 196 (318)
T 3sov_A 159 IIINSE-IYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLD 196 (318)
T ss_dssp EEECSS-CSCEEEEEEETTTTEEEEEET--TTTEEEEEETT
T ss_pred EEEECC-CCCccEEEEeccCCEEEEEEC--CCCEEEEEcCC
Confidence 344332 2234567776 567776643 34568888877
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.11 Score=52.52 Aligned_cols=173 Identities=9% Similarity=0.011 Sum_probs=91.2
Q ss_pred EEEEEEEECCCCceeec-cccC--cceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEE
Q 004368 216 IYTVYVIDIETGTPVGK-PLVG--VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQA 292 (758)
Q Consensus 216 ~~~l~v~dl~~g~~~~~-~~~~--~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~ 292 (758)
...|+++|.++|+.+-. .... ....+.++|||.+++ +.+ ..|+.++. ++ +.+--+.........++..
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~-----~~V~~~d~-~G--~~~W~~~~~~~~~~~~~~~ 84 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYS-----KGAKMITR-DG--RELWNIAAPAGCEMQTARI 84 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECB-----SEEEEECT-TS--CEEEEEECCTTCEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCC-----CCEEEECC-CC--CEEEEEcCCCCccccccEE
Confidence 46799999989987643 3332 245578999997766 322 24666665 33 2222222221122335678
Q ss_pred cCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc--c-----eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCC
Q 004368 293 SESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV--G-----VDTAASHRGNHFFITRRSDELFNSELLACPVDNT 365 (758)
Q Consensus 293 S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~--~-----~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~ 365 (758)
++||+.++..+.. ...++.+|.++.. +..+.-... + ....+.++|+.++.. .. +.+|+.+|.+
T Consensus 85 ~~dG~~lv~~~~~--~~~v~~vd~~Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~-~~----~~~v~~~d~~-- 154 (276)
T 3no2_A 85 LPDGNALVAWCGH--PSTILEVNMKGEV-LSKTEFETGIERPHAQFRQINKNKKGNYLVPL-FA----TSEVREIAPN-- 154 (276)
T ss_dssp CTTSCEEEEEEST--TEEEEEECTTSCE-EEEEEECCSCSSGGGSCSCCEECTTSCEEEEE-TT----TTEEEEECTT--
T ss_pred CCCCCEEEEecCC--CCEEEEEeCCCCE-EEEEeccCCCCcccccccCceECCCCCEEEEe-cC----CCEEEEECCC--
Confidence 9999988765432 4578888875432 222211100 0 112367788855432 22 3679999876
Q ss_pred CcceeeecCCCCceeeeEEEeC-CEEEEEEEeCCeeEEEEEEcCCCCC
Q 004368 366 SETTVLIPHRESVKLQDIQLFI-DHLAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
+...|.+..... ..+..... +.+++....++ ++..++.+. |+
T Consensus 155 G~~~w~~~~~~~--~~~~~~~~~g~~~v~~~~~~--~v~~~d~~t-G~ 197 (276)
T 3no2_A 155 GQLLNSVKLSGT--PFSSAFLDNGDCLVACGDAH--CFVQLNLES-NR 197 (276)
T ss_dssp SCEEEEEECSSC--CCEEEECTTSCEEEECBTTS--EEEEECTTT-CC
T ss_pred CCEEEEEECCCC--ccceeEcCCCCEEEEeCCCC--eEEEEeCcC-Cc
Confidence 355664433211 12333333 44554444333 355555442 54
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.08 Score=56.94 Aligned_cols=150 Identities=14% Similarity=0.068 Sum_probs=86.8
Q ss_pred EEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceee-c----c-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-K----P-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 196 ~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~-~----~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
+.|+|||+.|.. .+..+. ..|++++.+++.... . . ......+++++|++ .||+ .. . ..+|++++.
T Consensus 176 ia~~~~g~~l~~-~d~~~~--~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d-~---~~~I~~~d~ 247 (409)
T 3hrp_A 176 PAVTKDKQRVYS-IGWEGT--HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VD-S---NKNFGRFNV 247 (409)
T ss_dssp CEECTTSSEEEE-EBSSTT--CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-EC-T---TCEEEEEET
T ss_pred eeEecCCCcEEE-EecCCC--ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EE-C---CCcEEEEEC
Confidence 789999997654 444342 279999988765422 1 1 11224558999954 7766 32 2 236898888
Q ss_pred CCCCCCcEEEe----eecCCcee-e-EEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccc-------------
Q 004368 269 EADQSNDICLY----HEKDDIYS-L-GLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV------------- 329 (758)
Q Consensus 269 ~~~~~~~~~v~----~~~~~~~~-~-~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~------------- 329 (758)
.++. ..++ ........ . ++.++|++..|++... ....|++++.++. ...+....
T Consensus 248 ~~~~---~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~--~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~ 320 (409)
T 3hrp_A 248 KTQE---VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ--NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEA 320 (409)
T ss_dssp TTCC---EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET--TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGC
T ss_pred CCCC---EEEEecccccCCCCCCccccEEEeCCCCEEEEEeC--CCCEEEEEecCCC--EEEEEeCCCCCCcCCCccccc
Confidence 7652 2333 11111122 2 6789998778777543 3457899988653 33332211
Q ss_pred --cc-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 330 --VG-VDTAASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 330 --~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
.. ....++++|+ ||+.-... +.+|.++++.+
T Consensus 321 ~~~~P~gia~d~dG~-lyvad~~~---~~~I~~~~~~~ 354 (409)
T 3hrp_A 321 LFAQPNGMTVDEDGN-FYIVDGFK---GYCLRKLDILD 354 (409)
T ss_dssp BCSSEEEEEECTTCC-EEEEETTT---TCEEEEEETTT
T ss_pred EeCCCeEEEEeCCCC-EEEEeCCC---CCEEEEEECCC
Confidence 00 1123788887 66653302 46888888544
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.2 Score=49.59 Aligned_cols=179 Identities=12% Similarity=0.134 Sum_probs=98.7
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
.++.++ || .|..+.-..| ...|.++|+++|+.+.. .++....+..-+++| ++|... .+...++.++..+.
T Consensus 46 qGL~~~-~~-~LyestG~~g--~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~lt----w~~~~v~v~D~~t~ 117 (262)
T 3nol_A 46 EGFFYR-NG-YFYESTGLNG--RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLT----WKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEE-TT-EEEEEEEETT--EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEE----SSSSEEEEEETTTC
T ss_pred ceEEEE-CC-EEEEECCCCC--CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEE----eeCCEEEEEECccC
Confidence 456777 65 4433333334 57899999999998764 444332223344566 675553 23457999998876
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEE--eeccccce----eeEEeecCCEEEE
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV--LTPRVVGV----DTAASHRGNHFFI 345 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~--l~~~~~~~----~~~~s~dg~~l~~ 345 (758)
.. +.-+.-.... ...++||+.|+++. ++.+|+.+|.++.+.... +......+ +..+. +| .||.
T Consensus 118 ~~--~~ti~~~~eG----~glt~dg~~L~~Sd---Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lya 186 (262)
T 3nol_A 118 RQ--VRSFNYDGEG----WGLTHNDQYLIMSD---GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFA 186 (262)
T ss_dssp CE--EEEEECSSCC----CCEEECSSCEEECC---SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEE
T ss_pred cE--EEEEECCCCc----eEEecCCCEEEEEC---CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEE
Confidence 32 2222222222 23457898877643 357899999998762222 22111111 12243 44 6776
Q ss_pred EEcCCCCCCcEEEEEeCCCCCcceeeec-----C-----CCCceeeeEEEeC--CEEEEEEE
Q 004368 346 TRRSDELFNSELLACPVDNTSETTVLIP-----H-----RESVKLQDIQLFI--DHLAVYER 395 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~~~~~l~~-----~-----~~~~~~~~~~~~~--~~l~~~~~ 395 (758)
..... ..|+++|.++.....++-- . .....+-+++++. +.++++..
T Consensus 187 n~w~~----~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 187 NVWQT----NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EETTS----SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEccC----CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 55443 4799999876433333211 1 1122456777764 56666553
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.46 Score=51.01 Aligned_cols=183 Identities=10% Similarity=0.099 Sum_probs=101.9
Q ss_pred EECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCC
Q 004368 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSN 274 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~ 274 (758)
.+++||++|+.+... ..|++||+.+++.... . -.+....+.| |+.++++...++ .|.++++.++.
T Consensus 138 ~~~~d~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg----~i~vwd~~~~~-- 204 (435)
T 1p22_A 138 CLQYDDQKIVSGLRD-----NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDS----TVRVWDVNTGE-- 204 (435)
T ss_dssp EEECCSSEEEEEESS-----SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTS----CEEEEESSSCC--
T ss_pred EEEECCCEEEEEeCC-----CeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCC----eEEEEECCCCc--
Confidence 456699999876542 3599999999887653 1 1222444666 775555554332 47888887762
Q ss_pred cEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCce---EEeeccccceeeEEeecCCEEEEEEcCCC
Q 004368 275 DICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL---RVLTPRVVGVDTAASHRGNHFFITRRSDE 351 (758)
Q Consensus 275 ~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~---~~l~~~~~~~~~~~s~dg~~l~~~s~~~~ 351 (758)
....+.... .....+.++ +..|+..+.+ ..|.++|+.++... ..+...... ...+..+++.++..+.+
T Consensus 205 ~~~~~~~h~-~~v~~l~~~--~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~s~~~d-- 275 (435)
T 1p22_A 205 MLNTLIHHC-EAVLHLRFN--NGMMVTCSKD---RSIAVWDMASPTDITLRRVLVGHRAA-VNVVDFDDKYIVSASGD-- 275 (435)
T ss_dssp EEEEECCCC-SCEEEEECC--TTEEEEEETT---SCEEEEECSSSSCCEEEEEECCCSSC-EEEEEEETTEEEEEETT--
T ss_pred EEEEEcCCC-CcEEEEEEc--CCEEEEeeCC---CcEEEEeCCCCCCceeeeEecCCCCc-EEEEEeCCCEEEEEeCC--
Confidence 333333322 233456665 3455544332 34677788766512 222222222 22344578877666543
Q ss_pred CCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 352 LFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 352 ~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
..|...|+.+......+..+. ..+..+.+.++.++ +...+|. +.+|++..
T Consensus 276 ---g~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~l~-~g~~dg~--i~iwd~~~ 325 (435)
T 1p22_A 276 ---RTIKVWNTSTCEFVRTLNGHK--RGIACLQYRDRLVV-SGSSDNT--IRLWDIEC 325 (435)
T ss_dssp ---SEEEEEETTTCCEEEEEECCS--SCEEEEEEETTEEE-EEETTSC--EEEEETTT
T ss_pred ---CeEEEEECCcCcEEEEEcCCC--CcEEEEEeCCCEEE-EEeCCCe--EEEEECCC
Confidence 467788887632222233232 24566777766554 4455554 77888874
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.31 Score=51.00 Aligned_cols=174 Identities=8% Similarity=0.006 Sum_probs=101.6
Q ss_pred EEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCC
Q 004368 218 TVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASES 295 (758)
Q Consensus 218 ~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~D 295 (758)
.|+.+++++...... .......+++|.+++ .||++-.. ..+|++.++.+.. ...+....- ..-.++++.+.
T Consensus 54 ~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~----~~~I~r~~~~g~~--~~~~~~~~~-~~p~glavd~~ 126 (349)
T 3v64_C 54 DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT----LDRILRANLNGSN--VEEVVSTGL-ESPGGLAVDWV 126 (349)
T ss_dssp CEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETT----TTEEEEEETTSCS--CEEEECSSC-SCCCEEEEETT
T ss_pred ceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEecc----CCceEEEecCCCC--ceEEEeCCC-CCccEEEEecC
Confidence 478888877665432 111224568999876 77666432 2368888887653 222322211 11135677787
Q ss_pred CcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccc-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeec
Q 004368 296 KKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIP 373 (758)
Q Consensus 296 g~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~ 373 (758)
++.|++.... ...|+++++++.. .+.+.. .... ....++|.++.||+.-... ..+|+++++++. ....++.
T Consensus 127 ~g~ly~~d~~--~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~---~~~I~r~~~dG~-~~~~~~~ 199 (349)
T 3v64_C 127 HDKLYWTDSG--TSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGN---TPRIEASSMDGS-GRRIIAD 199 (349)
T ss_dssp TTEEEEEETT--TTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSC-SCEESCC
T ss_pred CCeEEEEcCC--CCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCC---CCEEEEEeCCCC-CcEEEEE
Confidence 8888876543 3578999998764 444432 2111 1234788888888774432 378999998762 2233333
Q ss_pred CCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcC
Q 004368 374 HRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 374 ~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
.. -....++.++ ++.||+.-. +...|..++++
T Consensus 200 ~~-~~~PnGla~d~~~~~lY~aD~--~~~~I~~~~~d 233 (349)
T 3v64_C 200 TH-LFWPNGLTIDYAGRRMYWVDA--KHHVIERANLD 233 (349)
T ss_dssp SS-CSCEEEEEEETTTTEEEEEET--TTTEEEEEETT
T ss_pred CC-CCCcceEEEeCCCCEEEEEEC--CCCEEEEEeCC
Confidence 22 2235567776 567776643 33567888877
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.022 Score=61.90 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=69.4
Q ss_pred EEeeEEECCC-CCEEEEEEeCCCCeEEEEEEEECCCCceeeccc--cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPD-NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPD-G~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+..+.|+|+ +++||-... +| +|++||+.++....... ......++|+|||..+++...++ .|.++++
T Consensus 151 ~V~~v~~~p~~~~~las~s~-Dg----~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg----~v~iwd~ 221 (434)
T 2oit_A 151 MVIDMKWNPTVPSMVAVCLA-DG----SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNG----TVVQYLP 221 (434)
T ss_dssp SEEEEEECSSCTTEEEEEET-TS----CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTS----CEEEECT
T ss_pred ceEEEEECCCCCCEEEEEEC-CC----eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCC----cEEEEcc
Confidence 4778899998 677665443 34 59999999885443221 22356699999994334444322 3777777
Q ss_pred CCCCCCcEEEeeec------CCceeeEEEEcCCCcEEEEEecCCc----ceEEEEEeCCCC
Q 004368 269 EADQSNDICLYHEK------DDIYSLGLQASESKKFLFIASESKI----TRFVFYLDVSKP 319 (758)
Q Consensus 269 ~~~~~~~~~v~~~~------~~~~~~~~~~S~Dg~~l~~~s~~~~----~~~l~~~d~~~~ 319 (758)
. +. ....+... ......++.|++++.+++..+...+ ...+.++++.+.
T Consensus 222 ~-~~--~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 222 T-LQ--EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp T-CC--EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred C-Cc--ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 5 21 12222211 1124567889999988876654432 235667777543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.11 Score=51.45 Aligned_cols=162 Identities=6% Similarity=-0.016 Sum_probs=92.1
Q ss_pred CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEEEEcCCCCCCcEEEEEe
Q 004368 283 DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSELLACP 361 (758)
Q Consensus 283 ~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~ 361 (758)
...|.-++.++ |+ .|+++....+.+.|..+|+++++ ...-.+-... +.-.++++|++||.++..+ ..++++|
T Consensus 41 ~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgk-v~~~~~l~~~~FgeGit~~g~~ly~ltw~~----~~v~v~D 113 (262)
T 3nol_A 41 TKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGK-TLQQIELGKRYFGEGISDWKDKIVGLTWKN----GLGFVWN 113 (262)
T ss_dssp TTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCC-EEEEEECCTTCCEEEEEEETTEEEEEESSS----SEEEEEE
T ss_pred CCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCc-EEEEEecCCccceeEEEEeCCEEEEEEeeC----CEEEEEE
Confidence 34566677887 55 78887777778899999999987 2221111111 1122677899999998765 5799999
Q ss_pred CCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCC-cccC
Q 004368 362 VDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSE-SVFS 440 (758)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~-~~~d 440 (758)
.++..... -++.... --+++.+++.|+++ +|..++++++..+ .+.+ ..+........+...| ..+.
T Consensus 114 ~~t~~~~~-ti~~~~e--G~glt~dg~~L~~S---dGs~~i~~iDp~T-~~v~------~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 114 IRNLRQVR-SFNYDGE--GWGLTHNDQYLIMS---DGTPVLRFLDPES-LTPV------RTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp TTTCCEEE-EEECSSC--CCCEEECSSCEEEC---CSSSEEEEECTTT-CSEE------EEEECEETTEECCCEEEEEEE
T ss_pred CccCcEEE-EEECCCC--ceEEecCCCEEEEE---CCCCeEEEEcCCC-CeEE------EEEEeccCCccccccceeEEE
Confidence 87633222 2222211 13566777777654 3566777776542 2221 2222211111111111 1223
Q ss_pred CcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 441 SRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 441 ~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
+..+++. .+. ...|+++|+++++.
T Consensus 181 ~G~lyan--~w~-~~~I~vIDp~tG~V 204 (262)
T 3nol_A 181 DGEIFAN--VWQ-TNKIVRIDPETGKV 204 (262)
T ss_dssp TTEEEEE--ETT-SSEEEEECTTTCBE
T ss_pred CCEEEEE--Ecc-CCeEEEEECCCCcE
Confidence 4455433 333 45899999999983
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.023 Score=68.07 Aligned_cols=155 Identities=11% Similarity=0.070 Sum_probs=89.8
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
.+..+.||| |++|+-.. .+ ..|+|||+.+++.+.. ...+....++|+||+.++++...++ .|.++++.+
T Consensus 60 ~V~~l~fsp-g~~L~S~s-~D----~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg----~V~lwd~~~ 129 (902)
T 2oaj_A 60 AIKEMRFVK-GIYLVVIN-AK----DTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNG----SMIVYDIDR 129 (902)
T ss_dssp CEEEEEEET-TTEEEEEE-TT----CEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTS----CEEEEETTT
T ss_pred CEEEEEEcC-CCEEEEEE-Cc----CeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCC----cEEEEECCC
Confidence 577889999 88666443 22 4799999999886642 3333466799999995555554332 478888876
Q ss_pred CCCCcEEE-------ee-ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc--------------
Q 004368 271 DQSNDICL-------YH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-------------- 328 (758)
Q Consensus 271 ~~~~~~~v-------~~-~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-------------- 328 (758)
+......+ .. ........+++|+|++..+++..... ..| ++|+.+++..+.+...
T Consensus 130 ~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d--g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~ 206 (902)
T 2oaj_A 130 DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY--VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKT 206 (902)
T ss_dssp TEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS--CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCT
T ss_pred CccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC--CcE-EEECCCCceEEEEecccCCcCCCccccccc
Confidence 52110001 00 11122344788999754444433333 346 7788776522222211
Q ss_pred ----cccee-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 329 ----VVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 329 ----~~~~~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
...+. ..|+|+|+.|+..+.+ ..|..+|+.+
T Consensus 207 ~~~h~~~V~~v~fspdg~~lasgs~D-----g~i~lWd~~~ 242 (902)
T 2oaj_A 207 NEKRTPKVIQSLYHPNSLHIITIHED-----NSLVFWDANS 242 (902)
T ss_dssp TSCBCCCEEEEEECTTSSEEEEEETT-----CCEEEEETTT
T ss_pred ccccCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCC
Confidence 11122 3499999977665543 3466667754
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.22 Score=52.93 Aligned_cols=174 Identities=8% Similarity=0.004 Sum_probs=101.2
Q ss_pred EEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCC
Q 004368 218 TVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASES 295 (758)
Q Consensus 218 ~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~D 295 (758)
.|+.+++++++.... .......+++|.+++ .||++-.. ..+|++.++.+.. ...+....- ..-.++++.+.
T Consensus 97 ~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~----~~~I~r~~~~g~~--~~~~~~~~~-~~p~glavd~~ 169 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT----LDRILRANLNGSN--VEEVVSTGL-ESPGGLAVDWV 169 (386)
T ss_dssp CEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETT----TTEEEEEETTSCC--EEEEECSSC-SCCCCEEEETT
T ss_pred cceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCC----CCcEEEEecCCCC--cEEEEeCCC-CCccEEEEEeC
Confidence 588889987765443 111224568999876 77766432 2368888887552 222322211 11125677787
Q ss_pred CcEEEEEecCCcceEEEEEeCCCCCceEEeeccc-cc-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeec
Q 004368 296 KKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-VG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIP 373 (758)
Q Consensus 296 g~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~-~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~ 373 (758)
++.|++.... ...|+++++++.. .+.+.... .. ....++|.++.||+.-... ..+|++++.++. ....++.
T Consensus 170 ~g~lY~~d~~--~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~---~~~I~r~~~dG~-~~~~~~~ 242 (386)
T 3v65_B 170 HDKLYWTDSG--TSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGN---TPRIEASSMDGS-GRRIIAD 242 (386)
T ss_dssp TTEEEEEETT--TTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSC-SCEEEEC
T ss_pred CCeEEEEcCC--CCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCC---CCEEEEEeCCCC-CcEEEEE
Confidence 8888876543 3478899988654 34443221 11 1234788888888764332 378999998763 2333443
Q ss_pred CCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcC
Q 004368 374 HRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 374 ~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
.. -....++.++ ++.||+.-. +...|+.++++
T Consensus 243 ~~-~~~PnGlavd~~~~~lY~aD~--~~~~I~~~d~d 276 (386)
T 3v65_B 243 TH-LFWPNGLTIDYAGRRMYWVDA--KHHVIERANLD 276 (386)
T ss_dssp SS-CSCEEEEEEEGGGTEEEEEET--TTTEEEEECTT
T ss_pred CC-CCCeeeEEEeCCCCEEEEEEC--CCCEEEEEeCC
Confidence 32 2234567765 567776644 33467777766
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.43 Score=55.65 Aligned_cols=196 Identities=5% Similarity=0.010 Sum_probs=110.3
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCc----eeeccc--cCcceeEEEecCC-eEEEEEeCCCCCCceEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT----PVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~----~~~~~~--~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~ 265 (758)
..++.+.+.+..|.|+ +... ..|+.+++++.. ...... .....+++..+.+ .||++-. . ..+|++
T Consensus 426 ~~gl~~d~~~~~lY~s-D~~~---~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~-~---~~~I~v 497 (791)
T 3m0c_C 426 VVALDTEVASNRIYWS-DLSQ---RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS-V---LGTVSV 497 (791)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET-T---TTEEEE
T ss_pred eEEEeecccCCeeEEe-eccc---eeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEec-C---CCeEEE
Confidence 3466778877776444 4333 257888887532 111111 1123457887777 6665532 2 236888
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccc-cc-eeeEEeecCCEE
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-VG-VDTAASHRGNHF 343 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~-~~-~~~~~s~dg~~l 343 (758)
.++.+. ....+.... ...-.++++.|.+.+|+++... ....|+++++++.. .+.+.... .. ....+++.+++|
T Consensus 498 ~~ldG~--~~~~l~~~~-l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~-~~~lv~~~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 498 ADTKGV--KRKTLFREN-GSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRL 572 (791)
T ss_dssp EETTSS--SEEEEEECT-TCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEE
T ss_pred EeCCCC--eEEEEEeCC-CCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCc-eEEEEeCCCCCceEEEEecCCCeE
Confidence 888754 233333322 1122367888988888886532 23679999998765 44443321 11 123377788888
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCcceeeecCC-CCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 344 FITRRSDELFNSELLACPVDNTSETTVLIPHR-ESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
|++-.. +.+|.++++++. ....++... .-...-++++++++||++-..+ ..|..++..
T Consensus 573 YwaD~~----~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~--~~I~~~dk~ 631 (791)
T 3m0c_C 573 YWVDSK----LHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIIN--EAIFSANRL 631 (791)
T ss_dssp EEEETT----TTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEETTEEEEEETTT--TEEEEEETT
T ss_pred EEEeCC----CCcEEEEecCCC-ceEEEecCCCccCCCCEEEEeCCEEEEEECCC--CEEEEEeCC
Confidence 887432 468999999763 233344321 1123457788999887665443 346666543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.46 Score=51.07 Aligned_cols=186 Identities=15% Similarity=0.153 Sum_probs=101.7
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc--ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+..+.+ ||++|+-+.. +| .|++||+.+++..... -......+.|+++ .+ ++...++ .|.++++.+
T Consensus 176 v~~l~~--~~~~l~sg~~-dg----~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l-~s~s~dg----~i~vwd~~~ 242 (435)
T 1p22_A 176 VLCLQY--DERVIITGSS-DS----TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MM-VTCSKDR----SIAVWDMAS 242 (435)
T ss_dssp EEEEEC--CSSEEEEEET-TS----CEEEEESSSCCEEEEECCCCSCEEEEECCTT-EE-EEEETTS----CEEEEECSS
T ss_pred EEEEEE--CCCEEEEEcC-CC----eEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-EE-EEeeCCC----cEEEEeCCC
Confidence 444444 8888876543 33 5999999999876531 1223455778643 44 4443322 477778876
Q ss_pred CCCCcE-EEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcC
Q 004368 271 DQSNDI-CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~-~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~ 349 (758)
+..... ..+... ......+.+ |+++|+..+.+ ..|.++|+.+++....+......+ ..+..+++.++..+.+
T Consensus 243 ~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~l~~g~~d 315 (435)
T 1p22_A 243 PTDITLRRVLVGH-RAAVNVVDF--DDKYIVSASGD---RTIKVWNTSTCEFVRTLNGHKRGI-ACLQYRDRLVVSGSSD 315 (435)
T ss_dssp SSCCEEEEEECCC-SSCEEEEEE--ETTEEEEEETT---SEEEEEETTTCCEEEEEECCSSCE-EEEEEETTEEEEEETT
T ss_pred CCCceeeeEecCC-CCcEEEEEe--CCCEEEEEeCC---CeEEEEECCcCcEEEEEcCCCCcE-EEEEeCCCEEEEEeCC
Confidence 632111 122222 222334455 78887765543 357888988876333333333322 2344567766655443
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
..|...|+.+......+..+ ...+..+.++++.++ +...+|. +.+|++.
T Consensus 316 -----g~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~l~-sg~~dg~--i~vwd~~ 364 (435)
T 1p22_A 316 -----NTIRLWDIECGACLRVLEGH--EELVRCIRFDNKRIV-SGAYDGK--IKVWDLV 364 (435)
T ss_dssp -----SCEEEEETTTCCEEEEECCC--SSCEEEEECCSSEEE-EEETTSC--EEEEEHH
T ss_pred -----CeEEEEECCCCCEEEEEeCC--cCcEEEEEecCCEEE-EEeCCCc--EEEEECC
Confidence 35777787653222223222 234567777665554 5555664 7788875
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.47 Score=48.68 Aligned_cols=181 Identities=14% Similarity=0.104 Sum_probs=96.7
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc---------------------cCcceeEEEec-CCeEEE
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---------------------VGVTASVEWAG-NEALVY 251 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~---------------------~~~~~~~~wsp-Dg~l~y 251 (758)
.++.|+|||+.+ |+...+ ..|+.+|.++++...... .+...++++.+ +|.||.
T Consensus 22 ~~i~~d~~g~~l-~v~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 22 NSFTFDSTNKGF-YTSVQD----GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp CCEECCTTCSSE-EEECTT----SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred eEEEEcCCCCEE-EEEcCC----CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 357889998743 433322 358888888765542110 01234578887 667765
Q ss_pred EEeCCCCCCceEEEEEcCCCCCCcEEEeeecC---CceeeEEEEcC-CCcEEEEEecC---------------CcceEEE
Q 004368 252 ITMDEILRPDKAWLHKLEADQSNDICLYHEKD---DIYSLGLQASE-SKKFLFIASES---------------KITRFVF 312 (758)
Q Consensus 252 ~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~---~~~~~~~~~S~-Dg~~l~~~s~~---------------~~~~~l~ 312 (758)
.... ..++..+..++ ....+..... ..+..++...+ ||+ |++.... .....|+
T Consensus 97 ~d~~-----~~i~~~d~~~g--~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 97 VDCY-----YHLSVVGSEGG--HATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp EETT-----TEEEEECTTCE--ECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred EECC-----CCEEEEeCCCC--EEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEE
Confidence 5322 23666665433 1122221111 11234577899 886 4554422 1236799
Q ss_pred EEeCCCCCceEEeeccccc-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCC--cceeeecCCCCceeeeEEEeCC-
Q 004368 313 YLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTS--ETTVLIPHRESVKLQDIQLFID- 388 (758)
Q Consensus 313 ~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~- 388 (758)
++|.++++ ...+...... ....++++|+.||+.... +.+|+++++++.. ..+.+.. ... ..++..+.+
T Consensus 169 ~~d~~~~~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~----~~~I~~~~~~~~~~~~~~~~~~-~~g--P~gi~~d~~G 240 (322)
T 2fp8_A 169 KYDPSTKE-TTLLLKELHVPGGAEVSADSSFVLVAEFL----SHQIVKYWLEGPKKGTAEVLVK-IPN--PGNIKRNADG 240 (322)
T ss_dssp EEETTTTE-EEEEEEEESCCCEEEECTTSSEEEEEEGG----GTEEEEEESSSTTTTCEEEEEE-CSS--EEEEEECTTS
T ss_pred EEeCCCCE-EEEeccCCccCcceEECCCCCEEEEEeCC----CCeEEEEECCCCcCCccceEEe-CCC--CCCeEECCCC
Confidence 99987765 4443322111 123488999988877543 3689999887521 1122221 111 566777764
Q ss_pred EEEEEEE
Q 004368 389 HLAVYER 395 (758)
Q Consensus 389 ~l~~~~~ 395 (758)
.+++...
T Consensus 241 ~l~va~~ 247 (322)
T 2fp8_A 241 HFWVSSS 247 (322)
T ss_dssp CEEEEEE
T ss_pred CEEEEec
Confidence 4554443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.52 Score=55.00 Aligned_cols=176 Identities=9% Similarity=0.024 Sum_probs=100.6
Q ss_pred EEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCC--CCcEEEeeecCCceeeEEEEc
Q 004368 218 TVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ--SNDICLYHEKDDIYSLGLQAS 293 (758)
Q Consensus 218 ~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~--~~~~~v~~~~~~~~~~~~~~S 293 (758)
.|+.+++++++...+. ......+++|.+.+ .||++... ..+|++.++.... .....+.... ...-.++++.
T Consensus 405 ~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~----~~~I~~~~l~g~~~~~~~~~vi~~~-l~~P~GLAvD 479 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS----QRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVD 479 (791)
T ss_dssp SEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT----TTEEEEEEC--------CEEEECSS-CSCCCEEEEE
T ss_pred ceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeecc----ceeEEEEeccCCCCCcceeEEEecC-CCCcceeeee
Confidence 4777888776654431 11223458898866 77665432 2368888876421 1223343321 1112356777
Q ss_pred CCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccc-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceee
Q 004368 294 ESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVL 371 (758)
Q Consensus 294 ~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l 371 (758)
+.++.|+++.. ....|+++++++.. .+.+.. .... ....+++.+++||+.-... ..+|.++++++. ....+
T Consensus 480 ~~~~~LY~tD~--~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~---~~~I~~~~~dG~-~~~~l 552 (791)
T 3m0c_C 480 WIHSNIYWTDS--VLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---PAKIKKGGLNGV-DIYSL 552 (791)
T ss_dssp TTTTEEEEEET--TTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSC-CEEEE
T ss_pred ecCCcEEEEec--CCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCC---CCeEEEEecCCC-ceEEE
Confidence 88888887643 34579999998765 444433 2211 1234788888888764322 368999999762 23334
Q ss_pred ecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcC
Q 004368 372 IPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 372 ~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+.... ....++.++ ++.||+.- .+...|.+++++
T Consensus 553 v~~~l-~~P~GLavD~~~~~LYwaD--~~~~~I~~~d~d 588 (791)
T 3m0c_C 553 VTENI-QWPNGITLDLLSGRLYWVD--SKLHSISSIDVN 588 (791)
T ss_dssp ECSSC-SCEEEEEEETTTTEEEEEE--TTTTEEEEEETT
T ss_pred EeCCC-CCceEEEEecCCCeEEEEe--CCCCcEEEEecC
Confidence 44332 245567766 56777664 344568888876
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.037 Score=56.98 Aligned_cols=198 Identities=12% Similarity=0.049 Sum_probs=96.6
Q ss_pred EEeeEEECC--CCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc---cCcceeEEEecC--CeEEEEEeCCCCCCceE
Q 004368 192 SVGCFQVSP--DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL---VGVTASVEWAGN--EALVYITMDEILRPDKA 263 (758)
Q Consensus 192 ~i~~~~~SP--DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~---~~~~~~~~wspD--g~l~y~~~~~~~~~~~v 263 (758)
.+..+.|+| +|++||-... + .+|++||+.+++.... .+ ......++|+|| |.++.+...+. .+
T Consensus 59 ~V~~v~~~~~~~~~~l~s~s~-D----~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~----~i 129 (316)
T 3bg1_A 59 PVWQVAWAHPMYGNILASCSY-D----RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG----AI 129 (316)
T ss_dssp CEEEEEECCGGGSSCEEEEET-T----SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS----CE
T ss_pred cEEEEEeCCCCCCCEEEEEEC-C----CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC----CE
Confidence 467789987 4888774432 3 3699999998753221 22 223566999998 54444544322 36
Q ss_pred EEEEcCCCCCCcE-EEeeecCCceeeEEEEcCCC-----------------cEEEEEecCCcceEEEEEeCCCCCceEE-
Q 004368 264 WLHKLEADQSNDI-CLYHEKDDIYSLGLQASESK-----------------KFLFIASESKITRFVFYLDVSKPEELRV- 324 (758)
Q Consensus 264 ~~~~l~~~~~~~~-~v~~~~~~~~~~~~~~S~Dg-----------------~~l~~~s~~~~~~~l~~~d~~~~~~~~~- 324 (758)
.++++.++..... ..+.. .......+.|+|++ ++|+ +....+.-.|| |+.+...++.
T Consensus 130 ~lwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~D~~v~lW--d~~~~~~~~~~ 205 (316)
T 3bg1_A 130 SLLTYTGEGQWEVKKINNA-HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA-SGGCDNLIKLW--KEEEDGQWKEE 205 (316)
T ss_dssp EEEEECSSSCEEECCBTTS-SSSCBCCCEECCCCCC------CCSCCCCCCCBEE-CCBTTSBCCEE--EECTTSCEEEE
T ss_pred EEEecCCCCCcceeeeecc-ccCCcceEEEccccCCccccccccccCccccceEE-EecCCCeEEEE--EeCCCCcccee
Confidence 6666654321000 11111 11122346788873 4443 33333334455 4443211222
Q ss_pred --eeccccceee-EEeecC----CEEEEEEcCCCCCCcEEEEEeCCCCCc---c-eeeecCCCCceeeeEEEeCC-EEEE
Q 004368 325 --LTPRVVGVDT-AASHRG----NHFFITRRSDELFNSELLACPVDNTSE---T-TVLIPHRESVKLQDIQLFID-HLAV 392 (758)
Q Consensus 325 --l~~~~~~~~~-~~s~dg----~~l~~~s~~~~~~~~~L~~~~~~~~~~---~-~~l~~~~~~~~~~~~~~~~~-~l~~ 392 (758)
+......+.. .|+|++ ..|+..+ .+ ..|...++.+... . ..+..+. ..+..+.+..+ .+++
T Consensus 206 ~~l~~h~~~V~~v~~sp~~~~~~~~las~s-~D----~~v~iw~~~~~~~~~~~~~~~~~~~--~~v~~v~~sp~g~~la 278 (316)
T 3bg1_A 206 QKLEAHSDWVRDVAWAPSIGLPTSTIASCS-QD----GRVFIWTCDDASSNTWSPKLLHKFN--DVVWHVSWSITANILA 278 (316)
T ss_dssp ECCBCCSSCEEEEECCCCSSCSCCEEEEEE-TT----CEEEEEECSSTTCCCCBCCEEEECS--SCEEEEEECTTTCCEE
T ss_pred eecccCCCceEEEEecCCCCCCCceEEEEc-CC----CeEEEEEccCccccchhhhhhhcCC--CcEEEEEEcCCCCEEE
Confidence 2223233332 388886 4444333 33 3466666654211 1 1122222 23455666543 3344
Q ss_pred EEEeCCeeEEEEEEcCCCC
Q 004368 393 YEREGGLQKITTYRLPAVG 411 (758)
Q Consensus 393 ~~~~~g~~~l~v~~l~~~g 411 (758)
+...++. +++|+....|
T Consensus 279 s~~~D~~--v~lw~~~~~g 295 (316)
T 3bg1_A 279 VSGGDNK--VTLWKESVDG 295 (316)
T ss_dssp EEESSSC--EEEEEECTTS
T ss_pred EEcCCCe--EEEEEECCCC
Confidence 5556665 6677776434
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.37 Score=48.25 Aligned_cols=192 Identities=12% Similarity=0.145 Sum_probs=99.6
Q ss_pred EeeEEE-CCCCCEEEEEEeCCCCeEEEEEEEECCCCceee-cccc--CcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 193 VGCFQV-SPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLV--GVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 193 i~~~~~-SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~-~~~~--~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
...+.+ +++|+.++ .+..+ ...|+++|. +|+... .... ....+++++|||.++++... ...|++++.
T Consensus 79 p~~i~~~~~~g~l~v--~~~~~--~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~ 149 (286)
T 1q7f_A 79 PNRVAVVRNSGDIIV--TERSP--THQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECK----VMRVIIFDQ 149 (286)
T ss_dssp EEEEEEETTTTEEEE--EECGG--GCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETT----TTEEEEECT
T ss_pred ceEEEEEcCCCeEEE--EcCCC--CCEEEEECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECC----CCEEEEEcC
Confidence 456677 57776433 33211 246889995 455443 2211 12456899999986555322 235777764
Q ss_pred CCCCCCcEEEeee-cCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccc--cce-eeEEeecCCEEE
Q 004368 269 EADQSNDICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV--VGV-DTAASHRGNHFF 344 (758)
Q Consensus 269 ~~~~~~~~~v~~~-~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~--~~~-~~~~s~dg~~l~ 344 (758)
.. +....+.. .......++.+++||+ |++... ....|+++|.++.. ...+.... ... ...++++|. +|
T Consensus 150 ~g---~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~g~~-~~~~~~~g~~~~p~~i~~d~~G~-l~ 221 (286)
T 1q7f_A 150 NG---NVLHKFGCSKHLEFPNGVVVNDKQE-IFISDN--RAHCVKVFNYEGQY-LRQIGGEGITNYPIGVGINSNGE-IL 221 (286)
T ss_dssp TS---CEEEEEECTTTCSSEEEEEECSSSE-EEEEEG--GGTEEEEEETTCCE-EEEESCTTTSCSEEEEEECTTCC-EE
T ss_pred CC---CEEEEeCCCCccCCcEEEEECCCCC-EEEEEC--CCCEEEEEcCCCCE-EEEEccCCccCCCcEEEECCCCC-EE
Confidence 32 22223322 1112234678999998 444332 24578889986543 33332211 111 223778875 66
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcC
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~ 408 (758)
+....+ +.+|.+++.++ .....+........+.++.++.+ .+++. ..+ ..+.+|++.
T Consensus 222 v~~~~~---~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~--~~v~v~~~~ 279 (286)
T 1q7f_A 222 IADNHN---NFNLTIFTQDG-QLISALESKVKHAQCFDVALMDDGSVVLA-SKD--YRLYIYRYV 279 (286)
T ss_dssp EEECSS---SCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT--TEEEEEECS
T ss_pred EEeCCC---CEEEEEECCCC-CEEEEEcccCCCCcceeEEECCCCcEEEE-CCC--CeEEEEEcc
Confidence 655432 23788888654 22222322222223456666654 55554 334 457788775
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.63 Score=46.47 Aligned_cols=188 Identities=11% Similarity=0.101 Sum_probs=98.7
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc---CcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~---~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
+..+.++|||+..+ .+..+ ..|+.+|.+ ++......+ ....++++.+||.+++.... ...|++++.
T Consensus 59 ~~~i~~~~~g~l~v--~~~~~---~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~d~- 127 (299)
T 2z2n_A 59 VMCLTISSDGEVWF--TENAA---NKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMN----GNRIGRITD- 127 (299)
T ss_dssp EEEEEECTTSCEEE--EETTT---TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT----TTEEEEECT-
T ss_pred eeeEEECCCCCEEE--eCCCC---CeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecC----CceEEEECC-
Confidence 56778999998433 33322 258888886 444332222 12455888898877766432 235777776
Q ss_pred CCCCCcEEEeeec-CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEe-ec-cccce-eeEEeecCCEEEE
Q 004368 270 ADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL-TP-RVVGV-DTAASHRGNHFFI 345 (758)
Q Consensus 270 ~~~~~~~~v~~~~-~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l-~~-~~~~~-~~~~s~dg~~l~~ 345 (758)
++. ...+... ......++.+++||+. ++... ....|+++|. +++ ...+ .+ ..... ...++++|. +|+
T Consensus 128 ~g~---~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~--~~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~~~~g~-l~v 198 (299)
T 2z2n_A 128 DGK---IREYELPNKGSYPSFITLGSDNAL-WFTEN--QNNAIGRITE-SGD-ITEFKIPTPASGPVGITKGNDDA-LWF 198 (299)
T ss_dssp TCC---EEEEECSSTTCCEEEEEECTTSCE-EEEET--TTTEEEEECT-TCC-EEEEECSSTTCCEEEEEECTTSS-EEE
T ss_pred CCC---EEEecCCCCCCCCceEEEcCCCCE-EEEeC--CCCEEEEEcC-CCc-EEEeeCCCCCCcceeEEECCCCC-EEE
Confidence 331 2222111 1222346778899864 44332 2357899998 555 4333 11 11111 223677776 666
Q ss_pred EEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcC
Q 004368 346 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~ 408 (758)
..... ..|++++. + +....+........+.++..+.+ .+++....+ ..+.+++.+
T Consensus 199 ~~~~~----~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--~~i~~~d~~ 254 (299)
T 2z2n_A 199 VEIIG----NKIGRITT-S-GEITEFKIPTPNARPHAITAGAGIDLWFTEWGA--NKIGRLTSN 254 (299)
T ss_dssp EETTT----TEEEEECT-T-CCEEEEECSSTTCCEEEEEECSTTCEEEEETTT--TEEEEEETT
T ss_pred EccCC----ceEEEECC-C-CcEEEEECCCCCCCceeEEECCCCCEEEeccCC--ceEEEECCC
Confidence 65433 47888887 3 22222212222234556777654 454443222 346667653
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.2 Score=51.90 Aligned_cols=198 Identities=12% Similarity=0.050 Sum_probs=88.8
Q ss_pred CeEEEeeEEECCC----CCEEEEEEeCCCCeEEEEEEEECCCCceeeccc---cCcceeEEEecCC--------------
Q 004368 189 GFYSVGCFQVSPD----NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---VGVTASVEWAGNE-------------- 247 (758)
Q Consensus 189 ~~~~i~~~~~SPD----G~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~---~~~~~~~~wspDg-------------- 247 (758)
+.-.+..+.+||| |++++-.. .++.|+++.+|+.+.... .+...-++++|||
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g-------~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~ 182 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSG-------NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEET 182 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEE-------EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSC
T ss_pred cccceEEEEECCCccccccEEEeCC-------CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCcee
Confidence 3456788899999 88888633 224444554444432111 1112223334444
Q ss_pred -----------eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecC--CceeeEEEEcCCCcEEEEEecC---------
Q 004368 248 -----------ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKD--DIYSLGLQASESKKFLFIASES--------- 305 (758)
Q Consensus 248 -----------~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~--~~~~~~~~~S~Dg~~l~~~s~~--------- 305 (758)
.++..... ...|.++++.+++ ....+...+ ......+++||||+.++..+..
T Consensus 183 ~l~fs~~~g~~~~LaSgS~----D~TIkIWDl~TGk--~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG 256 (356)
T 2w18_A 183 ILTFAEVQGMQEALLGTTI----MNNIVIWNLKTGQ--LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR 256 (356)
T ss_dssp EEEEEEEETSTTEEEEEET----TSEEEEEETTTCC--EEEEEECCC---CCCEEEEEEETTEEEEEEC-----------
T ss_pred eEEeeccCCCCceEEEecC----CCcEEEEECCCCc--EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc
Confidence 23333222 2357788998873 333443222 1123345799999988654421
Q ss_pred CcceEEEEEeCCCCCceEEee---c-cccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCce-e
Q 004368 306 KITRFVFYLDVSKPEELRVLT---P-RVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVK-L 380 (758)
Q Consensus 306 ~~~~~l~~~d~~~~~~~~~l~---~-~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~-~ 380 (758)
.....|.++|..+++....+. + +..+.....+.+|..++ ....+ ..|...|+.+......+..+..... .
T Consensus 257 s~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lA-SgS~D----gTIkIWDl~tGk~l~tL~gH~~~vvs~ 331 (356)
T 2w18_A 257 SPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAA-AILTS----GTIAIWDLLLGQCTALLPPVSDQHWSF 331 (356)
T ss_dssp -CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEE-EEETT----SCEEEEETTTCSEEEEECCC--CCCCE
T ss_pred CCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEE-EEcCC----CcEEEEECCCCcEEEEecCCCCCeEEE
Confidence 122455666777665111111 1 11110111222233333 22222 3577788876322222433332221 1
Q ss_pred eeEEEeCCEEEEEEEeCCeeEEEEEEc
Q 004368 381 QDIQLFIDHLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 381 ~~~~~~~~~l~~~~~~~g~~~l~v~~l 407 (758)
..|++++..|+ ....|+. |+||++
T Consensus 332 vafSPDG~~La-SGS~D~T--IklWd~ 355 (356)
T 2w18_A 332 VKWSGTDSHLL-AGQKDGN--IFVYHY 355 (356)
T ss_dssp EEECSSSSEEE-EECTTSC--EEEEEE
T ss_pred EEECCCCCEEE-EEECCCc--EEEecC
Confidence 24555555554 5556664 566654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=1.4 Score=50.05 Aligned_cols=194 Identities=9% Similarity=0.015 Sum_probs=116.7
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC--cceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
..++.+++++..|.++ |... ..|+.++++++........+ ...+++..+.+ .||++-. . ..+|.+.++.
T Consensus 39 ~~~l~~d~~~~~lywt-D~~~---~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~-~---~~~I~v~~~d 110 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWT-DISL---KTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADT-G---TNRIEVSKLD 110 (628)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET-T---TTEEEEEETT
T ss_pred eEEEEEECCCCEEEEE-ECCC---CeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEEC-C---CCEEEEEecC
Confidence 4567889988887555 4333 26888898876544321112 24457777666 6766532 2 2468888886
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEEEEc
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRR 348 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~ 348 (758)
+.. ...+.... -..-.+++..|...+|+++.. .....|+++++++.. .+.+...... ....+++++++||+.-.
T Consensus 111 G~~--~~~l~~~~-l~~P~~iavdp~~G~lY~tD~-g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 111 GQH--RQVLVWKD-LDSPRALALDPAEGFMYWTEW-GGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp STT--CEEEECSS-CCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEET
T ss_pred CCc--EEEEEeCC-CCCcccEEEccCCCeEEEeCC-CCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEEC
Confidence 542 23333221 112236778887778888653 235789999998876 5555432221 12347888899988754
Q ss_pred CCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 349 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
. +.+|.++++++.. . .++.... ...-+++++++++|++-..++ .|..++..
T Consensus 186 ~----~~~I~~~d~dG~~-~-~v~~~~l-~~P~glav~~~~ly~tD~~~~--~I~~~dk~ 236 (628)
T 4a0p_A 186 D----TNLIESSNMLGLN-R-EVIADDL-PHPFGLTQYQDYIYWTDWSRR--SIERANKT 236 (628)
T ss_dssp T----TTEEEEEETTSCS-C-EEEEECC-SCEEEEEEETTEEEEEETTTT--EEEEEETT
T ss_pred C----CCEEEEEcCCCCc-e-EEeeccC-CCceEEEEECCEEEEecCCCC--EEEEEECC
Confidence 3 3689999997632 2 3333222 234578889998887654443 45566543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.13 Score=55.79 Aligned_cols=158 Identities=15% Similarity=0.117 Sum_probs=89.2
Q ss_pred EEeeEEECC-CCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCC-CceEEEEEc
Q 004368 192 SVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILR-PDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SP-DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~-~~~v~~~~l 268 (758)
....+.++| ++.. +|..+.. ..|+++|+++++.... ........++|++||..+|++...... ...++....
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~----~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQ----HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBT----EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCe-EEEEeCC----CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 456778999 4555 4666654 6799999998876553 212224568999999544454432222 223444443
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc---ceeeEEeecCCEEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV---GVDTAASHRGNHFFI 345 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~---~~~~~~s~dg~~l~~ 345 (758)
...-. ....+.... .-.++.++|++.+|++... ...+|++++.+++. ...+..... -....++++|++||+
T Consensus 213 ~g~~~-~~~~l~~~~--~p~giavdp~~g~lyv~d~--~~~~V~~~~~~~~~-~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 213 ESGFK-VITELTKGQ--NCNGAETHPINGELYFNSW--NAGQVFRYDFTTQE-TTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp GGTSC-SEEEEEECS--SCCCEEECTTTCCEEEEET--TTTEEEEEETTTTE-EEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred CCcee-eeeeeccCC--CceEEEEeCCCCEEEEEEC--CCCEEEEEECCCCc-EEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 32211 112222211 1125678995556776543 34579999998765 323322111 122348999998888
Q ss_pred EEcCCCCCCcEEEEEeCCC
Q 004368 346 TRRSDELFNSELLACPVDN 364 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~ 364 (758)
.... +.+|++++.++
T Consensus 287 ~d~~----~~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVN----QHYILRSDYDW 301 (430)
T ss_dssp EETT----TTEEEEEEEET
T ss_pred EECC----CCEEEEEeCCc
Confidence 7543 36788877553
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.92 Score=45.25 Aligned_cols=233 Identities=11% Similarity=0.003 Sum_probs=117.7
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc---CcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~---~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
...++.+++||+. |..+..+ ..|.++|.+ ++.....++ ....++++.+||.+++.... ...|++.+.
T Consensus 21 ~p~~i~~d~~g~l--~v~~~~~---~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~v~~~d~ 90 (300)
T 2qc5_A 21 GPYGITSSEDGKV--WFTQHKA---NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENG----ANKIGKLSK 90 (300)
T ss_dssp CEEEEEECTTSCE--EEEETTT---TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT----TTEEEEECT
T ss_pred CcceeeECCCCCE--EEEcCCC---CeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecC----CCeEEEECC
Confidence 3457788999984 3344322 258888988 666543322 22455788888877665432 235777765
Q ss_pred CCCCCCcEEEeeec-CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEee-cc-ccce-eeEEeecCCEEE
Q 004368 269 EADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-PR-VVGV-DTAASHRGNHFF 344 (758)
Q Consensus 269 ~~~~~~~~~v~~~~-~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~-~~-~~~~-~~~~s~dg~~l~ 344 (758)
. +. ...+... ......++..+++|+. ++... ....|+.+|.+ ++ ...+. +. .... ...++++|+ +|
T Consensus 91 ~-g~---~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~--~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~d~~g~-l~ 160 (300)
T 2qc5_A 91 K-GG---FTEYPLPQPDSGPYGITEGLNGDI-WFTQL--NGDRIGKLTAD-GT-IYEYDLPNKGSYPAFITLGSDNA-LW 160 (300)
T ss_dssp T-SC---EEEEECSSTTCCEEEEEECSTTCE-EEEET--TTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSS-EE
T ss_pred C-CC---eEEecCCCCCCCCccceECCCCCE-EEEcc--CCCeEEEECCC-CC-EEEccCCCCCCCceeEEECCCCC-EE
Confidence 5 31 2222211 1122346678888874 44332 23468899987 44 33322 11 1111 223677787 66
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCccccccCCcee
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 423 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i 423 (758)
+....+ ..|++++..+ ....+........+.++..+.+ .+++.....+ .+.+++.+ |.. ...
T Consensus 161 v~~~~~----~~i~~~~~~g--~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~--~i~~~~~~--g~~-------~~~ 223 (300)
T 2qc5_A 161 FTENQN----NSIGRITNTG--KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGN--KIGRITTT--GEI-------SEY 223 (300)
T ss_dssp EEETTT----TEEEEECTTC--CEEEEECSSTTCCEEEEEECTTSSEEEEETTTT--EEEEECTT--CCE-------EEE
T ss_pred EEecCC----CeEEEECCCC--cEEEeeCCCCCCCcceEEECCCCCEEEEccCCC--EEEEEcCC--CcE-------EEE
Confidence 665432 5788888733 2222222222234556777654 4554433333 45566542 431 112
Q ss_pred eccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 424 EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 424 ~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.++.....+.++..+.++. ++++- .....++++|. +++
T Consensus 224 ~~~~~~~~~~~i~~d~~g~-l~v~~---~~~~~i~~~~~-~g~ 261 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSE-IWFTE---WGANQIGRITN-DNT 261 (300)
T ss_dssp ECSSTTCCEEEEEECSTTC-EEEEE---TTTTEEEEECT-TSC
T ss_pred ECCCCCCCceEEEECCCCC-EEEec---cCCCeEEEECC-CCc
Confidence 2221111111233344544 44433 12467888887 454
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.84 Score=44.67 Aligned_cols=180 Identities=13% Similarity=0.127 Sum_probs=98.6
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
++.+++ ..|..+.-..| .+.|.++|+++|+.+.. .++....+..-++++ ++|-.. .+...++.++..+..
T Consensus 25 GL~~~~--~~LyestG~~g--~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~lt----w~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 25 GLFYLR--GHLYESTGETG--RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLT----WRNHEGFVYDLATLT 96 (243)
T ss_dssp EEEEET--TEEEEEECCTT--SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEE----SSSSEEEEEETTTTE
T ss_pred cEEEEC--CEEEEECCCCC--CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEE----eeCCEEEEEECCcCc
Confidence 456664 45444433334 46899999999998764 444432223334456 665543 345579999987763
Q ss_pred CCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc--ee--eEEeecCCEEEEEEc
Q 004368 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG--VD--TAASHRGNHFFITRR 348 (758)
Q Consensus 273 ~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~--~~--~~~s~dg~~l~~~s~ 348 (758)
. +-.+.-.... ...++||+.|+++ + ++.+|+.+|.++.+....+.-...+ +. ......++.+|....
T Consensus 97 ~--~~ti~~~~~G----wglt~dg~~L~vS-d--gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw 167 (243)
T 3mbr_X 97 P--RARFRYPGEG----WALTSDDSHLYMS-D--GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVW 167 (243)
T ss_dssp E--EEEEECSSCC----CEEEECSSCEEEE-C--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred E--EEEEeCCCCc----eEEeeCCCEEEEE-C--CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEEC
Confidence 2 2222222222 2346789888764 3 3678999999887622222211111 11 113333556775554
Q ss_pred CCCCCCcEEEEEeCCCCCcceee-----ecC------CCCceeeeEEEeC--CEEEEEEE
Q 004368 349 SDELFNSELLACPVDNTSETTVL-----IPH------RESVKLQDIQLFI--DHLAVYER 395 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l-----~~~------~~~~~~~~~~~~~--~~l~~~~~ 395 (758)
.. ..|.++|.++.....++ .+. .....+.+++++. ++++++..
T Consensus 168 ~s----~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 168 LT----SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TT----TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CC----CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 33 37999998764333331 111 1223566777764 56766654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.21 Score=51.98 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=69.4
Q ss_pred EeeEEECCCCCEEEEEEeC--CCCeEEEEEEEECCCCceeecc-----c-c--CcceeEEEecCCeEEEEEeCC-CCCCc
Q 004368 193 VGCFQVSPDNKLVAYAEDT--KGDEIYTVYVIDIETGTPVGKP-----L-V--GVTASVEWAGNEALVYITMDE-ILRPD 261 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~--~G~e~~~l~v~dl~~g~~~~~~-----~-~--~~~~~~~wspDg~l~y~~~~~-~~~~~ 261 (758)
..++.+||||+.++ +..+ .|. .+|+.++ +|+....+ . . ....++++++||+||.+.... .....
T Consensus 19 p~~va~~~~g~~~v-~~~~~~~~~--~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 19 PGNITLTPDGRLFL-SLHQFYQPE--MQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp EEEEEECTTSCEEE-EECGGGCCS--CSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred cceEEECCCCCEEE-EeCCCCCCc--eEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 55789999998643 2222 232 5677777 56554221 0 0 124568999999876654220 00134
Q ss_pred eEEEEEcCCCCCCcEEEeeec-----CCceeeEEEEcCCCcEEEEEecCC-cceEEEEEeCCCCC
Q 004368 262 KAWLHKLEADQSNDICLYHEK-----DDIYSLGLQASESKKFLFIASESK-ITRFVFYLDVSKPE 320 (758)
Q Consensus 262 ~v~~~~l~~~~~~~~~v~~~~-----~~~~~~~~~~S~Dg~~l~~~s~~~-~~~~l~~~d~~~~~ 320 (758)
+|+++++.++. ....+.-+ ...+..++.+++++.+++++..+. ....|+++|+++++
T Consensus 94 ~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 94 KLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp EEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred eEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 68888987662 12222211 112234678888777777754321 45688999988765
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.32 Score=49.93 Aligned_cols=159 Identities=11% Similarity=0.038 Sum_probs=86.6
Q ss_pred EeeEEECC-CCCEEEEEEeCC--------------CCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCC
Q 004368 193 VGCFQVSP-DNKLVAYAEDTK--------------GDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDE 256 (758)
Q Consensus 193 i~~~~~SP-DG~~lAy~~~~~--------------G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~ 256 (758)
...+.+.| ||+. |..+.. +.....|+.+|.++++.... .......+++|+|||..+|++...
T Consensus 128 p~~i~~d~~~G~l--~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~ 205 (322)
T 2fp8_A 128 LYAVTVDQRTGIV--YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFL 205 (322)
T ss_dssp EEEEEECTTTCCE--EEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG
T ss_pred cceEEEecCCCEE--EEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCC
Confidence 56688999 9963 444432 11235799999988875432 111224568999999544554332
Q ss_pred CCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecC--------CcceEEEEEeCCCCCceEEeecc
Q 004368 257 ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES--------KITRFVFYLDVSKPEELRVLTPR 328 (758)
Q Consensus 257 ~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~--------~~~~~l~~~d~~~~~~~~~l~~~ 328 (758)
..+|+++++.+.......++... +. -.++..++||+ |++.... .....|+++|.++.. ...+...
T Consensus 206 ---~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~-~~~~~~~ 278 (322)
T 2fp8_A 206 ---SHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNI-LEVIPLP 278 (322)
T ss_dssp ---GTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCE-EEEEECC
T ss_pred ---CCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCE-EEEEECC
Confidence 24688888875322222333221 11 33577899997 5554433 224678999886432 3333221
Q ss_pred cc---ceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 329 VV---GVDTAASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 329 ~~---~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
.. ..-..+..++++||+.+.. +.+|.+++++.
T Consensus 279 ~g~~~~~~~~~~~~~g~L~v~~~~----~~~i~~~~~~~ 313 (322)
T 2fp8_A 279 PPFAGEHFEQIQEHDGLLYIGTLF----HGSVGILVYDK 313 (322)
T ss_dssp TTTTTSCCCEEEEETTEEEEECSS----CSEEEEEEC--
T ss_pred CCCccccceEEEEeCCEEEEeecC----CCceEEEeccc
Confidence 11 1111122246678876543 35788887753
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.51 Score=46.24 Aligned_cols=162 Identities=10% Similarity=-0.005 Sum_probs=92.0
Q ss_pred CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEEEEcCCCCCCcEEEEEe
Q 004368 283 DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSELLACP 361 (758)
Q Consensus 283 ~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~ 361 (758)
...|.-++.++. ..|+++....+.+.|..+|+++++ ...-.+-... +.-.++.+|++||.++..+ ..++++|
T Consensus 19 ~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgk-v~~~~~l~~~~fgeGi~~~~~~ly~ltw~~----~~v~v~D 91 (243)
T 3mbr_X 19 TTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGR-ILQRAEVPPPYFGAGIVAWRDRLIQLTWRN----HEGFVYD 91 (243)
T ss_dssp TTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCC-EEEEEECCTTCCEEEEEEETTEEEEEESSS----SEEEEEE
T ss_pred CccccccEEEEC--CEEEEECCCCCCceEEEEECCCCC-EEEEEeCCCCcceeEEEEeCCEEEEEEeeC----CEEEEEE
Confidence 345666777765 578887777778999999999987 3221111111 1122667799999998765 5799999
Q ss_pred CCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCC-cccC
Q 004368 362 VDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSE-SVFS 440 (758)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~-~~~d 440 (758)
.++..... -++.... --+++.+++.|+++ +|..+|++++..+ .+.+ +.+........+...| ..+.
T Consensus 92 ~~tl~~~~-ti~~~~~--Gwglt~dg~~L~vS---dgs~~l~~iDp~t-~~~~------~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 92 LATLTPRA-RFRYPGE--GWALTSDDSHLYMS---DGTAVIRKLDPDT-LQQV------GSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp TTTTEEEE-EEECSSC--CCEEEECSSCEEEE---CSSSEEEEECTTT-CCEE------EEEECEETTEECCCEEEEEEE
T ss_pred CCcCcEEE-EEeCCCC--ceEEeeCCCEEEEE---CCCCeEEEEeCCC-CeEE------EEEEEccCCcccccceeeEEe
Confidence 87632222 2332221 23566777777654 4667788776552 2211 2222211111111111 1223
Q ss_pred CcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 441 SRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 441 ~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
+.+++. ..+.+ ..|.++|+++++.
T Consensus 159 ~G~lya--nvw~s-~~I~vIDp~tG~V 182 (243)
T 3mbr_X 159 NGELLA--NVWLT-SRIARIDPASGKV 182 (243)
T ss_dssp TTEEEE--EETTT-TEEEEECTTTCBE
T ss_pred CCEEEE--EECCC-CeEEEEECCCCCE
Confidence 445543 33433 4899999999983
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=1.1 Score=44.76 Aligned_cols=187 Identities=13% Similarity=0.082 Sum_probs=99.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc---CcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~---~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+.++.++|||+.. ..+..+ ..|+++|.+ ++....... ....++++++||.+++.... ...|++.+.
T Consensus 16 ~~~~i~~d~~g~l~--v~~~~~---~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~ 85 (299)
T 2z2n_A 16 GPYGITVSDKGKVW--ITQHKA---NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENA----ANKIGRITK 85 (299)
T ss_dssp CEEEEEECTTSCEE--EEETTT---TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETT----TTEEEEECT
T ss_pred CccceEECCCCCEE--EEecCC---CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCC----CCeEEEECC
Confidence 45677889999843 333322 258889988 665543222 23456889999887766432 124777765
Q ss_pred CCCCCCcEEEeeec-CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc--ccce-eeEEeecCCEEE
Q 004368 269 EADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR--VVGV-DTAASHRGNHFF 344 (758)
Q Consensus 269 ~~~~~~~~~v~~~~-~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~--~~~~-~~~~s~dg~~l~ 344 (758)
. + + ...+... ......++.+++||+. ++.... ...|+++|. ++. ...+... .... ...++++| .+|
T Consensus 86 ~-g--~-~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~~--~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~~~~g-~l~ 155 (299)
T 2z2n_A 86 K-G--I-IKEYTLPNPDSAPYGITEGPNGDI-WFTEMN--GNRIGRITD-DGK-IREYELPNKGSYPSFITLGSDN-ALW 155 (299)
T ss_dssp T-S--C-EEEEECSSTTCCEEEEEECTTSCE-EEEETT--TTEEEEECT-TCC-EEEEECSSTTCCEEEEEECTTS-CEE
T ss_pred C-C--c-EEEEeCCCcCCCceeeEECCCCCE-EEEecC--CceEEEECC-CCC-EEEecCCCCCCCCceEEEcCCC-CEE
Confidence 4 2 1 2222211 1223346778898864 443322 356889998 444 3333211 1111 12366776 466
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceee-ecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEc
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVL-IPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l 407 (758)
+..... ..|++++. + +....+ .+.. ...+.++..+.+ .+++..... ..+.+++.
T Consensus 156 v~~~~~----~~i~~~~~-~-g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~--~~i~~~~~ 211 (299)
T 2z2n_A 156 FTENQN----NAIGRITE-S-GDITEFKIPTP-ASGPVGITKGNDDALWFVEIIG--NKIGRITT 211 (299)
T ss_dssp EEETTT----TEEEEECT-T-CCEEEEECSST-TCCEEEEEECTTSSEEEEETTT--TEEEEECT
T ss_pred EEeCCC----CEEEEEcC-C-CcEEEeeCCCC-CCcceeEEECCCCCEEEEccCC--ceEEEECC
Confidence 665432 57888887 3 222222 2222 223556766653 454443222 34666655
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=96.27 E-value=1 Score=48.28 Aligned_cols=185 Identities=14% Similarity=0.068 Sum_probs=99.3
Q ss_pred CCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEE
Q 004368 201 DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICL 278 (758)
Q Consensus 201 DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v 278 (758)
||++|+.... +| .|+++|+.+++.... . -.+....+.| |+..+++...++ .+.++++.++. ....
T Consensus 248 ~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~----~i~i~d~~~~~--~~~~ 314 (445)
T 2ovr_B 248 DGRRVVSGAY-DF----MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT----SIRVWDVETGN--CIHT 314 (445)
T ss_dssp CSSCEEEEET-TS----CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS----CEEEEETTTCC--EEEE
T ss_pred CCCEEEEEcC-CC----EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC----eEEEEECCCCC--EEEE
Confidence 7777765543 23 589999998876642 1 1223455677 774444444322 47888887762 3333
Q ss_pred eeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc--ccceeeEEeecCCEEEEEEcCCCCCCcE
Q 004368 279 YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR--VVGVDTAASHRGNHFFITRRSDELFNSE 356 (758)
Q Consensus 279 ~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~--~~~~~~~~s~dg~~l~~~s~~~~~~~~~ 356 (758)
+..... .... +++++++|+..+.+ ..|.++|+.+++....+... .......+..+++.++..+.+ +.
T Consensus 315 ~~~~~~-~v~~--~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d-----g~ 383 (445)
T 2ovr_B 315 LTGHQS-LTSG--MELKDNILVSGNAD---STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD-----GT 383 (445)
T ss_dssp ECCCCS-CEEE--EEEETTEEEEEETT---SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETT-----SE
T ss_pred EcCCcc-cEEE--EEEeCCEEEEEeCC---CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCC-----Ce
Confidence 332222 2223 44567776654433 35778888776623333321 111122344567765554432 46
Q ss_pred EEEEeCCCCCcceeeec---CCCCceeeeEEEeCCEEEE-EEEeCCe--eEEEEEEcCC
Q 004368 357 LLACPVDNTSETTVLIP---HRESVKLQDIQLFIDHLAV-YEREGGL--QKITTYRLPA 409 (758)
Q Consensus 357 L~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~-~~~~~g~--~~l~v~~l~~ 409 (758)
|..+++.+......+.. ......+..+.+..+..++ +...+|. ..+.+++++.
T Consensus 384 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 384 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 77788876332222311 1223356677777776544 4455553 4677888763
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.23 Score=51.68 Aligned_cols=162 Identities=9% Similarity=0.092 Sum_probs=86.3
Q ss_pred eEEEeeEEECCCCCEEEEEEeCCC--CeEEEEEEEECCCCceee-cccc-------CcceeEEEecCCeEEEEEeCCCCC
Q 004368 190 FYSVGCFQVSPDNKLVAYAEDTKG--DEIYTVYVIDIETGTPVG-KPLV-------GVTASVEWAGNEALVYITMDEILR 259 (758)
Q Consensus 190 ~~~i~~~~~SPDG~~lAy~~~~~G--~e~~~l~v~dl~~g~~~~-~~~~-------~~~~~~~wspDg~l~y~~~~~~~~ 259 (758)
.....++.++|||+. |..|... .....|+++|+++|+.+. ..++ .....+++++++..+|++......
T Consensus 66 ~~~p~gv~~d~~g~L--~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 66 FDTVLGIKSDGNGIV--WMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CSCEEEEEECSSSEE--EEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred eeEeeEEEEcCCCcE--EEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 446778899999974 4555320 002469999999998543 2222 113568999876344554321112
Q ss_pred CceEEEEEcCCCCCCcEEEeee----------------------cCC------ceeeEEEEcCCCcEEEEEecCCcceEE
Q 004368 260 PDKAWLHKLEADQSNDICLYHE----------------------KDD------IYSLGLQASESKKFLFIASESKITRFV 311 (758)
Q Consensus 260 ~~~v~~~~l~~~~~~~~~v~~~----------------------~~~------~~~~~~~~S~Dg~~l~~~s~~~~~~~l 311 (758)
...|+++++.++. ...+... .+. ....++++||||++|++.... ...|
T Consensus 144 ~~~i~v~d~~~g~--~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~--~~~l 219 (343)
T 2qe8_A 144 KAALIRVDLQTGL--AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH--STSM 219 (343)
T ss_dssp GCEEEEEETTTCC--EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS--CSEE
T ss_pred CCeEEEEECCCCC--EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC--CCeE
Confidence 3357766765442 1111110 000 012468899999999886543 3478
Q ss_pred EEEeCC---CCC--------ceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeC
Q 004368 312 FYLDVS---KPE--------ELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPV 362 (758)
Q Consensus 312 ~~~d~~---~~~--------~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~ 362 (758)
|.++.+ .+. ....+-....-....++++|. +|+.... +.+|.+++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~----~~~V~~~d~ 276 (343)
T 2qe8_A 220 YRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLA----HSAIGVITS 276 (343)
T ss_dssp EEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGG----GTEEEEEET
T ss_pred EEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEccC----CCeEEEEEC
Confidence 988753 111 011111110001123677764 6655333 357888887
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.15 Score=56.55 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=85.7
Q ss_pred eEEE-C-CCCCEEEEEEeC-------------CCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCC
Q 004368 195 CFQV-S-PDNKLVAYAEDT-------------KGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEIL 258 (758)
Q Consensus 195 ~~~~-S-PDG~~lAy~~~~-------------~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~ 258 (758)
.+.+ + |||++|...... .......+-++|.++.++... .+.+....++.+|||+.+|++.....
T Consensus 138 g~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se 217 (595)
T 1fwx_A 138 GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSE 217 (595)
T ss_dssp EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTT
T ss_pred ceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcc
Confidence 4555 6 999998444211 123356899999999887643 44444456889999955555542221
Q ss_pred C----------------------------------CceEEEEEcCCCCCCc-EEEeee-cCCceeeEEEEcCCCcEEEEE
Q 004368 259 R----------------------------------PDKAWLHKLEADQSND-ICLYHE-KDDIYSLGLQASESKKFLFIA 302 (758)
Q Consensus 259 ~----------------------------------~~~v~~~~l~~~~~~~-~~v~~~-~~~~~~~~~~~S~Dg~~l~~~ 302 (758)
. -..|-..+..+...+. ...... ..+ .++.+||||++++++
T Consensus 218 ~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P---hGv~~sPDGk~v~V~ 294 (595)
T 1fwx_A 218 KGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP---HGCNMAPDKKHLCVA 294 (595)
T ss_dssp CCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC---CCEEECTTSSEEEEE
T ss_pred cCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc---eEEEEcCCCCEEEEe
Confidence 1 0123344444310011 111111 112 246799999998875
Q ss_pred ecCCcceEEEEEeCCCCC-----------ce-EEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 303 SESKITRFVFYLDVSKPE-----------EL-RVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 303 s~~~~~~~l~~~d~~~~~-----------~~-~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
. .....|.++|+++.+ .. ..+..+..-....|++|| ++|.....+ .++.+++++.
T Consensus 295 ~--~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ld----sqV~kwdi~~ 361 (595)
T 1fwx_A 295 G--KLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLD----SQVVKWNIED 361 (595)
T ss_dssp C--TTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTT----TEEEEEEHHH
T ss_pred C--CCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecC----CcEEEEEhhH
Confidence 4 344667888887431 01 111111111233589999 655444333 5677777653
|
| >4az3_A Lysosomal protective protein 32 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.06 Score=54.53 Aligned_cols=131 Identities=11% Similarity=0.060 Sum_probs=76.7
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcC---------------------cEEEEEe
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRG---------------------FIFAIAQ 552 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G---------------------~~v~~~~ 552 (758)
.++..+.-|++..+.. ....|+||+.-||||.+... ..|.+.| ..++.+|
T Consensus 31 ~~~~~lFywf~es~~~---p~~~Pl~lWlnGGPGcSS~~------g~~~E~GP~~~~~~~~~l~~N~~sW~~~an~lfiD 101 (300)
T 4az3_A 31 SGSKHLHYWFVESQKD---PENSPVVLWLNGGPGCSSLD------GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLE 101 (300)
T ss_dssp STTEEEEEEEECCSSC---TTTSCEEEEECCTTTBCTHH------HHHHTTSSEEECTTSSCEEECTTCGGGSSEEEEEC
T ss_pred CCCCeEEEEEEEcCCC---CCCCCEEEEECCCCcHHHHH------HHHhcCCCceecCCCccccccCccHHhhhcchhhc
Confidence 4567777775543322 24579999999999976521 2222222 4577777
Q ss_pred cCCCCCCchhHHhcccccCCcChHhHHHHHH-HHHHHcCCCCCCcEEEEEeChhHHHHHHHHh---hCCC-ceeEEEEcC
Q 004368 553 IRGGGELGRQWYENGKFLKKKNTFTDFIACA-EYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN---MRPD-LFKAAVAAV 627 (758)
Q Consensus 553 ~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~---~~p~-~f~a~v~~~ 627 (758)
.+-+.|+...-.. ...........|+...+ .|+..........+.|.|.||||..+-.++. +.+. .++++++..
T Consensus 102 ~PvGtGfSy~~~~-~~~~~~~~~a~d~~~fl~~f~~~fp~~~~~~~yi~GESY~G~yvP~~a~~i~~~~~inLkG~~iGN 180 (300)
T 4az3_A 102 SPAGVGFSYSDDK-FYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGN 180 (300)
T ss_dssp CSTTSTTCEETTC-CCCCBHHHHHHHHHHHHHHHHHHCGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEES
T ss_pred CCCcccccccCCC-cccccchhhHHHHHHHHHHHHHhChhhcCCceEEEecCCceeeHHHHHHHHHhCCCcccccceecC
Confidence 7766555432110 00011112234444443 3455544445678999999999996654443 2232 479999999
Q ss_pred Cccchhh
Q 004368 628 PFVDVLT 634 (758)
Q Consensus 628 ~~~d~~~ 634 (758)
|++|...
T Consensus 181 g~~d~~~ 187 (300)
T 4az3_A 181 GLSSYEQ 187 (300)
T ss_dssp CCSBHHH
T ss_pred CccCHHH
Confidence 9998653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.20 E-value=1.3 Score=45.01 Aligned_cols=155 Identities=10% Similarity=-0.000 Sum_probs=83.0
Q ss_pred ceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCC
Q 004368 238 TASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS 317 (758)
Q Consensus 238 ~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~ 317 (758)
..+++|++||.||++... ..+|++++..+. ....+.. +..-.++.+++||+ |++.........|+.++..
T Consensus 34 pegia~~~~g~lyv~d~~----~~~I~~~d~~g~---~~~~~~~--~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHE----VGEIVSITPDGN---QQIHATV--EGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp EEEEEECTTSCEEEEETT----TTEEEEECTTCC---EEEEEEC--SSEEEEEEECTTSC-EEEEEECTTSCEEEEEECT
T ss_pred cceEEECCCCCEEEEeCC----CCeEEEECCCCc---eEEEEeC--CCCceeEEEcCCCc-EEEEeccCCcceEEEEcCC
Confidence 456899999887666432 235877765532 2223322 22344678999998 5554433233468888887
Q ss_pred CCCceEEeecccccee-e-EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceee--------ecCCCCceeeeEEEeC
Q 004368 318 KPEELRVLTPRVVGVD-T-AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVL--------IPHRESVKLQDIQLFI 387 (758)
Q Consensus 318 ~~~~~~~l~~~~~~~~-~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l--------~~~~~~~~~~~~~~~~ 387 (758)
+++ ++.+........ . .....+..+|+. +.. +.+|+++|..+.....+. .....-....++++++
T Consensus 104 ~g~-~~~~~~~~~~~~~~g~~~~~~~~~~v~-d~~---~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg 178 (306)
T 2p4o_A 104 DGT-VETLLTLPDAIFLNGITPLSDTQYLTA-DSY---RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG 178 (306)
T ss_dssp TSC-EEEEEECTTCSCEEEEEESSSSEEEEE-ETT---TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred CCe-EEEEEeCCCccccCcccccCCCcEEEE-ECC---CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCC
Confidence 776 554433211111 1 111234555554 322 358999987542111111 1111112234567788
Q ss_pred CEEEEEEEeCCeeEEEEEEcCC
Q 004368 388 DHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 388 ~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+.||+....+ .+|++++++.
T Consensus 179 ~~lyv~d~~~--~~I~~~~~~~ 198 (306)
T 2p4o_A 179 NFLYVSNTEK--MLLLRIPVDS 198 (306)
T ss_dssp TEEEEEETTT--TEEEEEEBCT
T ss_pred CEEEEEeCCC--CEEEEEEeCC
Confidence 8887765443 4588888874
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.20 E-value=1.2 Score=44.48 Aligned_cols=188 Identities=11% Similarity=0.092 Sum_probs=99.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc---CcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~---~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+..+.+++||+.. ..+..+ ..|+++|.+ |+......+ ....++++.++|.+++.... ...|++.+.
T Consensus 63 ~~~~i~~~~~g~l~--v~~~~~---~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~ 132 (300)
T 2qc5_A 63 KVMCLIVSSLGDIW--FTENGA---NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLN----GDRIGKLTA 132 (300)
T ss_dssp CEEEEEECTTSCEE--EEETTT---TEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETT----TTEEEEECT
T ss_pred cceeEEECCCCCEE--EEecCC---CeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccC----CCeEEEECC
Confidence 35677889999843 333322 258889987 665433322 22455788888887666432 235777765
Q ss_pred CCCCCCcEEEeeec-CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-c-ccce-eeEEeecCCEEE
Q 004368 269 EADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-R-VVGV-DTAASHRGNHFF 344 (758)
Q Consensus 269 ~~~~~~~~~v~~~~-~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~-~~~~s~dg~~l~ 344 (758)
. + ....+... ......++.+++||+ |++... ....|+++|. +++ ...+.. . .... ...++++|. +|
T Consensus 133 ~-g---~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~d~~g~-l~ 202 (300)
T 2qc5_A 133 D-G---TIYEYDLPNKGSYPAFITLGSDNA-LWFTEN--QNNSIGRITN-TGK-LEEYPLPTNAAAPVGITSGNDGA-LW 202 (300)
T ss_dssp T-S---CEEEEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCC-EEEEECSSTTCCEEEEEECTTSS-EE
T ss_pred C-C---CEEEccCCCCCCCceeEEECCCCC-EEEEec--CCCeEEEECC-CCc-EEEeeCCCCCCCcceEEECCCCC-EE
Confidence 4 3 12222211 122234677889998 555432 2346899998 444 333321 1 1111 123667664 77
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEc
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l 407 (758)
+..... ..|++++..+ .......+. ....+.++..+.+ .+++....+ ..+.+++.
T Consensus 203 v~~~~~----~~i~~~~~~g-~~~~~~~~~-~~~~~~~i~~d~~g~l~v~~~~~--~~i~~~~~ 258 (300)
T 2qc5_A 203 FVEIMG----NKIGRITTTG-EISEYDIPT-PNARPHAITAGKNSEIWFTEWGA--NQIGRITN 258 (300)
T ss_dssp EEETTT----TEEEEECTTC-CEEEEECSS-TTCCEEEEEECSTTCEEEEETTT--TEEEEECT
T ss_pred EEccCC----CEEEEEcCCC-cEEEEECCC-CCCCceEEEECCCCCEEEeccCC--CeEEEECC
Confidence 665433 4788888732 222222332 2234556777654 455444322 34556654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.03 Score=64.79 Aligned_cols=195 Identities=5% Similarity=0.010 Sum_probs=106.9
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCC----CceeeccccC--cceeEEEecCC-eEEEEEeCCCCCCceEEEE
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET----GTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~----g~~~~~~~~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~ 266 (758)
.++.|++++..|.| .+..+ ..|+++++++ .........+ ...++++.+.+ .||++-. ....|++.
T Consensus 409 ~gla~d~~~~~Ly~-sD~~~---~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~----~~~~I~v~ 480 (699)
T 1n7d_A 409 VALDTEVASNRIYW-SDLSQ---RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS----VLGTVSVA 480 (699)
T ss_dssp CCCEEETTTTEEEE-CCTTT---TSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCT----TTSCEEEE
T ss_pred EEEccccccCeEEE-EecCC---CeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEec----cCCeEEEE
Confidence 45688888887654 44333 2588888876 2222111111 13446776555 6655421 12357777
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccc-eeeEEeecCCEEE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFF 344 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~ 344 (758)
++.+. ....+.... ...-.+++++|++.+|+++.. .....|+++++++.. .+.+.. .... ....|++++++||
T Consensus 481 d~dg~--~~~~l~~~~-~~~P~giavDp~~g~ly~td~-~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY 555 (699)
T 1n7d_A 481 DTKGV--KRKTLFREQ-GSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLY 555 (699)
T ss_dssp BSSSC--CEEEECCCS-SCCCCCEECCSSSSCCEECCC-SSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEE
T ss_pred ecCCC--ceEEEEeCC-CCCcceEEEccCCCcEEEccc-CCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEE
Confidence 77644 223333221 111125678898888877542 223678998887654 333322 1111 1234888888898
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeecC-CCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIPH-RESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+.-.. +.+|.++++++. ..+.++.. .......++.+++++||++.... .+|.+++..
T Consensus 556 ~aD~~----~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~~lywtd~~~--~~V~~~d~~ 613 (699)
T 1n7d_A 556 WVDSK----LHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIIN--EAIFSANRL 613 (699)
T ss_dssp EEETT----TTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETTEEEEECSTT--TCEEEEETT
T ss_pred EEecC----CCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECCEEEEEeCCC--CeEEEEEcc
Confidence 87543 468999998752 22333332 11123456778889887765433 346666653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.49 Score=46.91 Aligned_cols=175 Identities=11% Similarity=0.039 Sum_probs=95.2
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQS 273 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~ 273 (758)
++.++ |+.|..+.-..| +|.++|+++|+.+...++....+-.-+++| +||... ++...++.++..+...
T Consensus 59 GL~~~--~~~Ly~stG~~g----~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~lt----w~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 59 GLVFH--QGHFFESTGHQG----TLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLT----WTEGLLFTWSGMPPQR 128 (268)
T ss_dssp EEEEE--TTEEEEEETTTT----EEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEE----SSSCEEEEEETTTTEE
T ss_pred eEEEE--CCEEEEEcCCCC----EEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEE----ccCCEEEEEECCcCcE
Confidence 44554 456544443333 299999999998763333332222345577 675543 2345789999887632
Q ss_pred CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEe--eccccce----eeEEeecCCEEEEEE
Q 004368 274 NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL--TPRVVGV----DTAASHRGNHFFITR 347 (758)
Q Consensus 274 ~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l--~~~~~~~----~~~~s~dg~~l~~~s 347 (758)
+.-+.-....+ ..++||+.|+++. ++.+|+.+|.++.+....+ ..+...+ +..|. +| .||...
T Consensus 129 --~~ti~~~~eGw----GLt~Dg~~L~vSd---Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanv 197 (268)
T 3nok_A 129 --ERTTRYSGEGW----GLCYWNGKLVRSD---GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANI 197 (268)
T ss_dssp --EEEEECSSCCC----CEEEETTEEEEEC---SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEE
T ss_pred --EEEEeCCCcee----EEecCCCEEEEEC---CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEE
Confidence 22222222222 3457899887653 3678999999887622222 2211111 11232 45 677655
Q ss_pred cCCCCCCcEEEEEeCCCCCcceee-----ec------CCCCceeeeEEEeC--CEEEEEE
Q 004368 348 RSDELFNSELLACPVDNTSETTVL-----IP------HRESVKLQDIQLFI--DHLAVYE 394 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l-----~~------~~~~~~~~~~~~~~--~~l~~~~ 394 (758)
... ..|.++|.++.....++ .+ ......+-+++++. ++|+++.
T Consensus 198 w~s----~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 198 WHS----SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTC----SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCC----CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 443 47999998764333332 11 11223566777774 5665544
|
| >1gxs_A P-(S)-hydroxymandelonitrIle lyase chain A; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.031 Score=55.73 Aligned_cols=143 Identities=10% Similarity=0.057 Sum_probs=78.8
Q ss_pred EEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCC-CCCh----------------HHHHHHHcCcEEEE
Q 004368 488 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNS----------------SRLSLLDRGFIFAI 550 (758)
Q Consensus 488 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~----------------~~~~l~~~G~~v~~ 550 (758)
.+.+....|..+.-|++..... . ....|++|+.+||||.+... +... ....|. +-..++.
T Consensus 28 yv~v~~~~~~~lFywf~es~~~-~-p~~~Pl~lWlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~SW~-~~anllf 104 (270)
T 1gxs_A 28 YVTIDDNNGRALYYWFQEADTA-D-PAAAPLVLWLNGGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWN-KAANILF 104 (270)
T ss_dssp EEEEETTTTEEEEEEEECCCSS-C-GGGSCEEEEEECTTTBCTTTTHHHHTTSSEEECTTSSCEEECTTCGG-GTSEEEE
T ss_pred EEEcCCCCCcEEEEEEEEecCC-C-CCCCCEEEEecCCCcccchhhhhHHhccCceecCCCCcceeCccchh-ccccEEE
Confidence 4445445567777775543122 1 24689999999999987653 1000 001122 2356888
Q ss_pred EecCCCCCCchhHHhcccccCCcChHhHHHHHHH-HHHHcCCCCCCcEEEEEeChhHHHH---HHHHhhCC----CceeE
Q 004368 551 AQIRGGGELGRQWYENGKFLKKKNTFTDFIACAE-YLIKNCYCTKEKLCIEGRSAGGLLI---GAVLNMRP----DLFKA 622 (758)
Q Consensus 551 ~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~---~~~~~~~p----~~f~a 622 (758)
+|.+-+.|+...-..............|+...++ |+...+......+.|.|.| |=++. ..+..+.. =.+++
T Consensus 105 iDqPvGtGfSy~~~~~~~~~~d~~~a~d~~~fl~~f~~~fp~~~~~~~yi~GES-G~yvP~la~~i~~~n~~~~~inLkG 183 (270)
T 1gxs_A 105 AESPAGVGFSYSNTSSDLSMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES-GHFIPQLSQVVYRNRNNSPFINFQG 183 (270)
T ss_dssp ECCSTTSTTCEESSGGGGCCCHHHHHHHHHHHHHHHHHHCGGGTTSEEEEEEEC-TTHHHHHHHHHHHTTTTCTTCEEEE
T ss_pred EeccccccccCCCCCccccCCcHHHHHHHHHHHHHHHHhChhhcCCCEEEEeCC-CcchHHHHHHHHhccccccceeeee
Confidence 8966555543211111110111123456666554 5555544556789999999 54432 22323221 24799
Q ss_pred EEEcCCccchhh
Q 004368 623 AVAAVPFVDVLT 634 (758)
Q Consensus 623 ~v~~~~~~d~~~ 634 (758)
+++..|++|...
T Consensus 184 i~ign~~~d~~~ 195 (270)
T 1gxs_A 184 LLVSSGLTNDHE 195 (270)
T ss_dssp EEEESCCCBHHH
T ss_pred EEEeCCccChhh
Confidence 999999998643
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=1.1 Score=46.77 Aligned_cols=137 Identities=10% Similarity=0.120 Sum_probs=72.6
Q ss_pred EEEEEECCC--CceeeccccC--------cceeEEEec--CC-eEEEEEeCC-CCCCceEEEEEcCCCCCCcEEEeeecC
Q 004368 218 TVYVIDIET--GTPVGKPLVG--------VTASVEWAG--NE-ALVYITMDE-ILRPDKAWLHKLEADQSNDICLYHEKD 283 (758)
Q Consensus 218 ~l~v~dl~~--g~~~~~~~~~--------~~~~~~wsp--Dg-~l~y~~~~~-~~~~~~v~~~~l~~~~~~~~~v~~~~~ 283 (758)
.|+++|+++ ++...+.+.+ ..-++...+ || ..+|+.... ....-+++.++.++. ...++-+-..
T Consensus 84 ~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g 161 (355)
T 3sre_A 84 KILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRH 161 (355)
T ss_dssp EEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT--EEEEEEEECC
T ss_pred eEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC--EEEEEecccc
Confidence 688899873 4444433322 123455444 56 334444433 233345777766543 2222222122
Q ss_pred Cc--eeeEEEEcCCCcEEEEEecC---------------CcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEE
Q 004368 284 DI--YSLGLQASESKKFLFIASES---------------KITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFI 345 (758)
Q Consensus 284 ~~--~~~~~~~S~Dg~~l~~~s~~---------------~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~ 345 (758)
.. ..-++...+||++.+ +... .....||.+|.. + .+.+...... -...|||||+.+|+
T Consensus 162 ~~~~~pND~~v~~~G~fyv-t~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 162 KLLPSVNDIVAVGPEHFYA-TNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp TTCSSEEEEEEEETTEEEE-EESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred CCCCCCceEEEeCCCCEEe-cCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEeecCCcccCcceECCCCCEEEE
Confidence 22 223567888998543 3211 123679999873 3 4444332211 12349999999998
Q ss_pred EEcCCCCCCcEEEEEeCCC
Q 004368 346 TRRSDELFNSELLACPVDN 364 (758)
Q Consensus 346 ~s~~~~~~~~~L~~~~~~~ 364 (758)
..... .+|++++++.
T Consensus 238 adt~~----~~I~~~~~~~ 252 (355)
T 3sre_A 238 AELLA----HKIHVYEKHA 252 (355)
T ss_dssp EEGGG----TEEEEEEECT
T ss_pred EeCCC----CeEEEEEECC
Confidence 86543 5788888754
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=96.02 E-value=0.43 Score=48.28 Aligned_cols=162 Identities=7% Similarity=0.101 Sum_probs=87.1
Q ss_pred EEeeEEECCCCCEEEEEEeCCC-----------CeEEEEEEEECCCCceeec-cccCcceeEEEe----cCCeEEEEEeC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKG-----------DEIYTVYVIDIETGTPVGK-PLVGVTASVEWA----GNEALVYITMD 255 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G-----------~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~ws----pDg~l~y~~~~ 255 (758)
.+..+.++|||+..+ +....+ .....|+.+|.+ ++.... .......+++|+ |||..+|+...
T Consensus 118 ~~~~i~~d~~g~l~v-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~ 195 (314)
T 1pjx_A 118 GCNDCAFDYEGNLWI-TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAET 195 (314)
T ss_dssp CCCEEEECTTSCEEE-EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEET
T ss_pred CCcCEEECCCCCEEE-EecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEEC
Confidence 355778999997543 322110 012578899887 655432 111224568999 99944444432
Q ss_pred CCCCCceEEEEEcC-CCCCCcEEEeee-cCC--ceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc
Q 004368 256 EILRPDKAWLHKLE-ADQSNDICLYHE-KDD--IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG 331 (758)
Q Consensus 256 ~~~~~~~v~~~~l~-~~~~~~~~v~~~-~~~--~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 331 (758)
. ...|+++++. ++......++.. ... ....++.+++||+.. +... ....|+++|.++++....+......
T Consensus 196 ~---~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~-v~~~--~~~~i~~~d~~~g~~~~~~~~~~~~ 269 (314)
T 1pjx_A 196 P---TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL-VANW--GSSHIEVFGPDGGQPKMRIRCPFEK 269 (314)
T ss_dssp T---TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE-EEEE--TTTEEEEECTTCBSCSEEEECSSSC
T ss_pred C---CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE-EEEc--CCCEEEEEcCCCCcEeEEEeCCCCC
Confidence 2 2357777764 221111112211 111 233467789999643 4322 2346889998855412223222112
Q ss_pred e-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCC
Q 004368 332 V-DTAASHRGNHFFITRRSDELFNSELLACPVDNT 365 (758)
Q Consensus 332 ~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~ 365 (758)
. ...++++|+.||+.+..+ ..|++++++..
T Consensus 270 ~~~i~~~~dg~~l~v~~~~~----~~l~~~~~~~~ 300 (314)
T 1pjx_A 270 PSNLHFKPQTKTIFVTEHEN----NAVWKFEWQRN 300 (314)
T ss_dssp EEEEEECTTSSEEEEEETTT----TEEEEEECSSC
T ss_pred ceeEEECCCCCEEEEEeCCC----CeEEEEeCCCC
Confidence 2 223789999888876653 47888887653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.067 Score=61.89 Aligned_cols=222 Identities=9% Similarity=0.043 Sum_probs=112.3
Q ss_pred EEEEEECCCCceeec-cccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCC--CCcEEEeeecCCceeeEEEEc
Q 004368 218 TVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ--SNDICLYHEKDDIYSLGLQAS 293 (758)
Q Consensus 218 ~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~--~~~~~v~~~~~~~~~~~~~~S 293 (758)
.|+++++++++.... .......+++|.+++ .||++... ..+|+++++.+.. .....+.... ...-.++++.
T Consensus 387 ~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~----~~~I~~~~~~g~~~~~~~~~~i~~~-~~~P~glavD 461 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS----QRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVD 461 (699)
T ss_dssp C-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTT----TTSBEEEESCCCCC-CCCCCBCCSC-C--CCCEECC
T ss_pred ceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecC----CCeEEEEecCCCCCCcceEEEEeCC-CCCcceEEEE
Confidence 588889988776543 111224458999877 66655322 2358888876410 0111122111 0011245666
Q ss_pred CCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-ccc-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceee
Q 004368 294 ESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVL 371 (758)
Q Consensus 294 ~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l 371 (758)
+.++.|+++. .....|+++++++.. .+.+... ... ....++|++++||+... . .+.+|+++++++. ....+
T Consensus 462 ~~~g~LY~tD--~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~-~--~~~~I~~~~~dG~-~~~~l 534 (699)
T 1n7d_A 462 WIHSNIYWTD--SVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDW-G--TPAKIKKGGLNGV-DIYSL 534 (699)
T ss_dssp CSSSBCEECC--TTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCC-S--SSCCEEBCCSSSC-CCCEE
T ss_pred eeCCcEEEEe--ccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEccc-C--CCCeEEEEeCCCC-CeeEE
Confidence 6666776643 234578999988764 4444322 111 12347787887776532 1 2368999888652 22223
Q ss_pred ecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEe
Q 004368 372 IPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYS 449 (758)
Q Consensus 372 ~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~s 449 (758)
+... -....++.++ ++.||+.- .+..+|.+++++ |... +.+. ......-.......+++.++++
T Consensus 535 ~~~~-l~~PnGlavd~~~~~LY~aD--~~~~~I~~~d~d--G~~~------~~~~-~~~~~~~~P~glavd~~~lywt-- 600 (699)
T 1n7d_A 535 VTEN-IQWPNGITLDLLSGRLYWVD--SKLHSISSIDVN--GGNR------KTIL-EDEKRLAHPFSLAVFEDKVFWT-- 600 (699)
T ss_dssp SCSS-CSSCCCEEECTTTCCEEEEE--TTTTEEEEECSS--SSCC------EEEC-CCSSSCSSCCCCEEETTEEEEE--
T ss_pred EeCC-CCCccEEEEeccCCEEEEEe--cCCCeEEEEccC--CCce------EEEE-ecCCcCCCceEeEEECCEEEEE--
Confidence 3222 2234567776 45676554 344567777776 4422 1111 1000000112234455554432
Q ss_pred cCCCCCEEEEEECCCCc
Q 004368 450 SLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 450 S~~~P~~i~~~d~~~~~ 466 (758)
. ..-.+|+++|..+++
T Consensus 601 d-~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 601 D-IINEAIFSANRLTGS 616 (699)
T ss_dssp C-STTTCEEEEETTTEE
T ss_pred e-CCCCeEEEEEccCCC
Confidence 2 233578888876665
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=1.7 Score=44.55 Aligned_cols=199 Identities=10% Similarity=0.015 Sum_probs=101.9
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCc--eeeccc-------cC---cceeEEEec-CCeEEEEEeCCCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT--PVGKPL-------VG---VTASVEWAG-NEALVYITMDEIL 258 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~--~~~~~~-------~~---~~~~~~wsp-Dg~l~y~~~~~~~ 258 (758)
...+++++|||+ .|..+... ..|+++|.++.. ...... .+ ...+++++| +|.+|++...
T Consensus 92 ~p~gia~d~~g~--l~v~d~~~---~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~--- 163 (329)
T 3fvz_A 92 LPHGLSIDTDGN--YWVTDVAL---HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY--- 163 (329)
T ss_dssp SEEEEEECTTSC--EEEEETTT---TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS---
T ss_pred CceEEEECCCCC--EEEEECCC---CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC---
Confidence 456789999999 34555433 369999987653 221110 11 234689999 5577665421
Q ss_pred CCceEEEEEcCCCCCCcEEEeeecCC---------ceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-
Q 004368 259 RPDKAWLHKLEADQSNDICLYHEKDD---------IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR- 328 (758)
Q Consensus 259 ~~~~v~~~~l~~~~~~~~~v~~~~~~---------~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~- 328 (758)
....|++++.. + +....+..... ..-.+++++||+..|++... ....|.+++.++++....+...
T Consensus 164 ~~~~I~~~~~~-g--~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 164 CNSRIVQFSPS-G--KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR--ENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp SCCEEEEECTT-S--CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECCTT
T ss_pred CCCeEEEEcCC-C--CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEEeccc
Confidence 12357766632 2 22233321110 11246788999667776543 3457888998866522233211
Q ss_pred cc-ce-eeEEeecCCEEEEEEcCC---CCCCcEEEEEeCCCCCcceeeec--CCCCceeeeEEEeCCE-EEEEEEeCCee
Q 004368 329 VV-GV-DTAASHRGNHFFITRRSD---ELFNSELLACPVDNTSETTVLIP--HRESVKLQDIQLFIDH-LAVYEREGGLQ 400 (758)
Q Consensus 329 ~~-~~-~~~~s~dg~~l~~~s~~~---~~~~~~L~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~-l~~~~~~~g~~ 400 (758)
.. .. ...++| +.++...... +..+.++++++..+. .....+. ......+.++.++.+. +++.... ..
T Consensus 239 ~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~--~~ 313 (329)
T 3fvz_A 239 FGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSG-EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH--TN 313 (329)
T ss_dssp TTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTC-CEEEEECCSSSCCSSEEEEEECTTSEEEEEESS--SC
T ss_pred cCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCC-eEEEEEcCCCCccCCeeEEEECCCCCEEEEECC--CC
Confidence 11 11 122555 3333332211 122457888887653 2222222 1122235677777664 4444333 34
Q ss_pred EEEEEEcC
Q 004368 401 KITTYRLP 408 (758)
Q Consensus 401 ~l~v~~l~ 408 (758)
+|++++++
T Consensus 314 ~I~~~~~~ 321 (329)
T 3fvz_A 314 TVWKFTLT 321 (329)
T ss_dssp CEEEEEEE
T ss_pred EEEEEeCC
Confidence 57778776
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.21 Score=54.10 Aligned_cols=156 Identities=10% Similarity=0.045 Sum_probs=88.3
Q ss_pred EEeeEEECCC--CCEEEEEEeCCCCeEEEEEEEECCCCceeeccc-cCcceeEEEecCCeEEEEEeCCCCC-CceEEEEE
Q 004368 192 SVGCFQVSPD--NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNEALVYITMDEILR-PDKAWLHK 267 (758)
Q Consensus 192 ~i~~~~~SPD--G~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~wspDg~l~y~~~~~~~~-~~~v~~~~ 267 (758)
....+.|+|| +.. .|..+.. ..|+.+|+++|+...... .....+++|++||.| |++...... ...++...
T Consensus 140 ~P~gvavd~~s~~g~-Lyv~D~~----~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~l-yVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDD-LYWVGQR----DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDM-VVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECTTTTTCE-EEEECBT----SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCE-EEEECCSCTTSEEEEEEC
T ss_pred CCceEEEccccCCCE-EEEEeCC----CCEEEEECCCCEEEEeecCCCCccEEEECCCCCE-EEEcCCCCcccceEEEEE
Confidence 4457799995 444 3556654 469999998888765421 122456899999994 454432211 22344443
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCce-EEeec-cccc--eeeEEeecCCEE
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL-RVLTP-RVVG--VDTAASHRGNHF 343 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~-~~l~~-~~~~--~~~~~s~dg~~l 343 (758)
....... ...+.... .-.++.++|++..|++... ....|++++.+++. . ..+.. .... ....++++|++|
T Consensus 214 ~~~~~~~-~~~~~~~~--~P~giavd~~~G~lyv~d~--~~~~V~~~d~~~g~-~~~~~~~~~~~~~~~~ia~dpdG~~L 287 (433)
T 4hw6_A 214 RASGFTE-RLSLCNAR--GAKTCAVHPQNGKIYYTRY--HHAMISSYDPATGT-LTEEEVMMDTKGSNFHIVWHPTGDWA 287 (433)
T ss_dssp GGGTTCC-EEEEEECS--SBCCCEECTTTCCEEECBT--TCSEEEEECTTTCC-EEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred CCCCeec-cccccccC--CCCEEEEeCCCCeEEEEEC--CCCEEEEEECCCCe-EEEEEeccCCCCCcccEEEeCCCCEE
Confidence 3222111 11222111 1124678885556666433 34579999998765 4 23322 1111 124589999988
Q ss_pred EEEEcCCCCCCcEEEEEeCC
Q 004368 344 FITRRSDELFNSELLACPVD 363 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~ 363 (758)
|+.-.. +.+|++++.+
T Consensus 288 Yvad~~----~~~I~~~~~d 303 (433)
T 4hw6_A 288 YIIYNG----KHCIYRVDYN 303 (433)
T ss_dssp EEEETT----TTEEEEEEBC
T ss_pred EEEeCC----CCEEEEEeCC
Confidence 887543 3688888765
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=1 Score=47.13 Aligned_cols=148 Identities=7% Similarity=-0.024 Sum_probs=76.5
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc----c--CcceeEEEecC---C-eEEEEEeC---CCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL----V--GVTASVEWAGN---E-ALVYITMD---EIL 258 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~----~--~~~~~~~wspD---g-~l~y~~~~---~~~ 258 (758)
...+.|.|||+ .|..+..| .|+++|. +|+ ... .+ . ....+++++|| + .||..... ...
T Consensus 31 P~~ia~~pdG~--l~V~e~~g----~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 31 PWSIAPLGGGR--YLVTERPG----RLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp EEEEEEEETTE--EEEEETTT----EEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CeEEEEcCCCe--EEEEeCCC----EEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 45778999998 45555554 5777774 454 211 11 1 12456899998 4 55443221 111
Q ss_pred CCceEEEEEcCCCC--C-CcEEEeee-cC--CceeeEEEEcCCCcEEEEEecCCc-----------ceEEEEEeCCCCC-
Q 004368 259 RPDKAWLHKLEADQ--S-NDICLYHE-KD--DIYSLGLQASESKKFLFIASESKI-----------TRFVFYLDVSKPE- 320 (758)
Q Consensus 259 ~~~~v~~~~l~~~~--~-~~~~v~~~-~~--~~~~~~~~~S~Dg~~l~~~s~~~~-----------~~~l~~~d~~~~~- 320 (758)
...+|++.++.... . +...++.. +. ....-.+.+.|||+ |+++..+.. ...|++++.++.-
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p 181 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP 181 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence 12468887775431 0 12223321 11 11223578999995 777654321 2479999987541
Q ss_pred ------ceEEeeccccc-eeeEEeecCCEEEEEEcC
Q 004368 321 ------ELRVLTPRVVG-VDTAASHRGNHFFITRRS 349 (758)
Q Consensus 321 ------~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~ 349 (758)
....+.....+ ....|+++.+.||+.-+.
T Consensus 182 ~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g 217 (354)
T 3a9g_A 182 ADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHG 217 (354)
T ss_dssp TTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECC
T ss_pred CCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecC
Confidence 01222221111 233478855567776554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.96 Score=44.81 Aligned_cols=159 Identities=9% Similarity=0.036 Sum_probs=88.3
Q ss_pred CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCC
Q 004368 284 DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVD 363 (758)
Q Consensus 284 ~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~ 363 (758)
..|..++.++ ++.|+++....+. |..+|+++++-.+.+.+.. -+.-.++.+|++||.++..+ ..++++|.+
T Consensus 54 ~~ftqGL~~~--~~~Ly~stG~~g~--v~~iD~~Tgkv~~~~l~~~-~FgeGit~~g~~Ly~ltw~~----~~v~V~D~~ 124 (268)
T 3nok_A 54 NAFTQGLVFH--QGHFFESTGHQGT--LRQLSLESAQPVWMERLGN-IFAEGLASDGERLYQLTWTE----GLLFTWSGM 124 (268)
T ss_dssp TCCEEEEEEE--TTEEEEEETTTTE--EEECCSSCSSCSEEEECTT-CCEEEEEECSSCEEEEESSS----CEEEEEETT
T ss_pred ccccceEEEE--CCEEEEEcCCCCE--EEEEECCCCcEEeEECCCC-cceeEEEEeCCEEEEEEccC----CEEEEEECC
Confidence 3455567665 5678776655443 8999999988222222221 11122677899999997765 579999987
Q ss_pred CCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCC-cccCCc
Q 004368 364 NTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSE-SVFSSR 442 (758)
Q Consensus 364 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~-~~~d~~ 442 (758)
+..... -++.... --+++.+++.|+++ +|..++++++..+ .+.+ ..+........+...| ..+.+.
T Consensus 125 Tl~~~~-ti~~~~e--GwGLt~Dg~~L~vS---dGs~~l~~iDp~T-~~v~------~~I~V~~~g~~v~~lNeLe~~dG 191 (268)
T 3nok_A 125 PPQRER-TTRYSGE--GWGLCYWNGKLVRS---DGGTMLTFHEPDG-FALV------GAVQVKLRGQPVELINELECANG 191 (268)
T ss_dssp TTEEEE-EEECSSC--CCCEEEETTEEEEE---CSSSEEEEECTTT-CCEE------EEEECEETTEECCCEEEEEEETT
T ss_pred cCcEEE-EEeCCCc--eeEEecCCCEEEEE---CCCCEEEEEcCCC-CeEE------EEEEeCCCCcccccccccEEeCC
Confidence 632222 2222211 23667888888755 3567788776542 2221 2222211111111111 122234
Q ss_pred EEEEEEecCCCCCEEEEEECCCCcE
Q 004368 443 ILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 443 ~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
.+++ +.+.+ ..|.++|+++++.
T Consensus 192 ~lya--nvw~s-~~I~vIDp~TG~V 213 (268)
T 3nok_A 192 VIYA--NIWHS-SDVLEIDPATGTV 213 (268)
T ss_dssp EEEE--EETTC-SEEEEECTTTCBE
T ss_pred EEEE--EECCC-CeEEEEeCCCCcE
Confidence 5543 33433 4899999999983
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 758 | ||||
| d1qfma1 | 430 | b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-termin | 5e-55 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 3e-40 | |
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 3e-18 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 2e-14 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 6e-14 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 8e-14 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 2e-13 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 3e-13 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 7e-12 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 1e-11 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 5e-11 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 2e-10 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 2e-09 | |
| d1ju3a2 | 347 | c.69.1.21 (A:5-351) Bacterial cocaine esterase N-t | 4e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-04 | |
| d1vkha_ | 263 | c.69.1.32 (A:) Putative serine hydrolase Ydr428c { | 0.003 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 0.004 |
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 430 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 193 bits (490), Expect = 5e-55
Identities = 65/464 (14%), Positives = 134/464 (28%), Gaps = 64/464 (13%)
Query: 43 MMSQSKLPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMS 102
M+S P V + + G D Y WL D + A+++ +N +
Sbjct: 1 MLS---FQYPDVYRDETAIQDYHGHKVCDPYAWLEDP--DSEQTKAFVEAQNKITVPFLE 55
Query: 103 GTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSV 162
I + S F++G Y+Y + + E
Sbjct: 56 QC-PIRGLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGE----- 109
Query: 163 HDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVI 222
+ LD N+ ++ G + S D + AY G + T+ +
Sbjct: 110 ------------ARVFLDPNILSDDGTVALRG-YAFSEDGEYFAYGLSASGSDWVTIKFM 156
Query: 223 DIETGTPVGKPLVGVTAS--VEWAGNEALVYITMD-----------EILRPDKAWLHKLE 269
++ + L V S + + Y K + H L
Sbjct: 157 KVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLG 216
Query: 270 ADQSNDICLYHEKDD-IYSLGLQASESKKFLFIASESKITRF--VFYLDVSKPEEL---- 322
DQS DI D+ + G + S+ +++ ++ ++Y D+ +
Sbjct: 217 TDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276
Query: 323 ---RVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLA--CPVDNTSETTVLIPHRES 377
L G ++ G F + + + ++ H +
Sbjct: 277 LKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD 336
Query: 378 VKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE-FIDPVYSIDPSE 436
V + + L + + + L G ++ F V S+
Sbjct: 337 VLEWVACVRSNFLVLCYLHDVKNTLQLH----------DLATGALLKIFPLEVGSVVGYS 386
Query: 437 SVFSSRILRFHYSSLRTPPSVYDYDMDMG---ISVLKKIETVLG 477
+ + ++S +P +Y D+ V +++ V G
Sbjct: 387 GQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVT-VKG 429
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 147 bits (371), Expect = 3e-40
Identities = 92/277 (33%), Positives = 140/277 (50%), Gaps = 8/277 (2%)
Query: 480 DTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRL 539
D ++Y T + + + DGT+IP+ IV++K + KLDGS P LYGYG + I P ++ SRL
Sbjct: 1 DASDYQTVQIFYPSKDGTKIPMFIVHKKGI-KLDGSHPAFLYGYGGFNISITPNYSVSRL 59
Query: 540 SLLDRG-FIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLC 598
+ + A+A IRGGGE G W++ G K+N F DF AEYLIK Y + ++L
Sbjct: 60 IFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLT 119
Query: 599 IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEE 658
I G S GGLL+ N RPDLF +A V +D+L T ++ E
Sbjct: 120 INGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFE 179
Query: 659 FYFYMKSYSPVDNVKAQN--YPHILVTAGLNDPRVMYSEPAKFVAKLRE----MKTDDNI 712
+ V +A + YP +L+ +D RV+ KF+A L+ + +N
Sbjct: 180 WLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNP 239
Query: 713 LLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749
LL + AGH + + + E + + F+ R L++
Sbjct: 240 LLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNI 276
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.9 bits (203), Expect = 3e-18
Identities = 38/260 (14%), Positives = 79/260 (30%), Gaps = 15/260 (5%)
Query: 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYG---SYEICNDPAFNSSRLSLLDRGFIFAI 550
D +P+ I+ PLLL G S + + + + G +
Sbjct: 10 IDDYNLPMQILKPATFTD-TTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVK 68
Query: 551 AQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIG 610
RG G G + + D + ++K Y + ++ + G+ GG L
Sbjct: 69 CDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLST 128
Query: 611 AVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVD 670
+L + + + +T +E Y K
Sbjct: 129 YILPAKGENQGQTFTCGSALSPITDFKLYASA--FSERYLGLHGLDNRAYEMTKVA---H 183
Query: 671 NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGH-FSKSGR 729
V A L+ D ++ + A+ + +L K + ++ ++ H F+ S
Sbjct: 184 RVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYP---DESHYFTSSSL 240
Query: 730 FERLREAAFTYTFLMRALSM 749
+ L + F + +
Sbjct: 241 KQHLYRS--IINFFVECFRI 258
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 71.8 bits (174), Expect = 2e-14
Identities = 44/268 (16%), Positives = 85/268 (31%), Gaps = 17/268 (6%)
Query: 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYG---SYEICNDPAFNSSRLSLL 542
+++ + T+ ++ + K PLLL Y S + N +
Sbjct: 3 SKKLDFIILNETKFWYQMILPPHFDK-SKKYPLLLDVYAGPCSQKADTVFRLNWATYLAS 61
Query: 543 DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGR 602
I A RG G G + D I A K + +++ I G
Sbjct: 62 TENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGW 121
Query: 603 SAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFY 662
S GG + VL +FK +A P + + G P E+ +
Sbjct: 122 SYGGYVTSMVLGSGSGVFKCGIAVAP-------VSRWEYYDSVYTERYMGLPTPEDNLDH 174
Query: 663 MKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 722
++ + + + L+ G D V + + A+ L ++ D + +
Sbjct: 175 YRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYT---DED 231
Query: 723 H-FSKSGRFERLREAAFTYTFLMRALSM 749
H + S + + F+ + S+
Sbjct: 232 HGIASSTAHQHIYTH--MSHFIKQCFSL 257
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 70.8 bits (172), Expect = 6e-14
Identities = 35/212 (16%), Positives = 57/212 (26%), Gaps = 16/212 (7%)
Query: 490 WASASDGTQIPICIVYRKNLVKLDGSDPLL--LYGYGSYEICNDPAFNSSRLSLLDRGFI 547
S S G I + + P L L G + + + N+ D+ +
Sbjct: 14 VPSPSMGRDIKVQFQSG------GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGL 67
Query: 548 FAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAE----YLIKNCYCTKEKLCIEGRS 603
+ + G WY+ T+ +L N + + G S
Sbjct: 68 SVVMPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLS 127
Query: 604 AGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEE--WGDPWKEEFYF 661
+ P F A A +D M I L + D W +
Sbjct: 128 MAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDP 187
Query: 662 YMKSYSPVDNVK--AQNYPHILVTAGLNDPRV 691
+ P+ NV N + V G P
Sbjct: 188 AWQRNDPLLNVGKLIANNTRVWVYCGNGKPSD 219
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 71.7 bits (174), Expect = 8e-14
Identities = 39/246 (15%), Positives = 70/246 (28%), Gaps = 23/246 (9%)
Query: 480 DTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLL----YGYGSYEICNDPAFN 535
+N+Y DG ++ IV K + P++L Y
Sbjct: 18 ASNDYIKREVMIPMRDGVKLHTVIVLPKG----AKNAPIVLTRTPYDASGRTERLASPHM 73
Query: 536 SSRLS-----LLDRGFIFAIAQIRGGGELGRQWY-----ENGKFLKKKNTFTDFIACAEY 585
LS ++ G+I +RG + + + TD ++
Sbjct: 74 KDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDW 133
Query: 586 LIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTT 645
L+KN + K+ + G S G + L K AV P +D
Sbjct: 134 LVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMID----GWMGDDWFNY 189
Query: 646 AEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLND-PRVMYSEPAKFVAKLR 704
+ + + + + +Y + L D + E + KL
Sbjct: 190 GAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLT 249
Query: 705 EMKTDD 710
E D
Sbjct: 250 EHAAYD 255
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 69.4 bits (168), Expect = 2e-13
Identities = 44/310 (14%), Positives = 86/310 (27%), Gaps = 35/310 (11%)
Query: 448 YSSLRTPPSVYDYDMDMGISVLKKI----ETVLGGFDTNNYFTERKWASASDGTQIPICI 503
Y +T P + + + L K+ + + + R + +I
Sbjct: 14 YKPEKTAPKDFSEFWKLSLEELAKVQAEPDLQPVDYPADGVKVYRLTYKSFGNARITGWY 73
Query: 504 VYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 563
+G P ++ +G + ++ G+ +RG
Sbjct: 74 AVPDK----EGPHPAIVKYHGYNA--SYDGEIHEMVNWALHGYATFGMLVRGQQRSEDTS 127
Query: 564 YENGKF--------------LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 609
+ + D + E + + ++ + G S GG L
Sbjct: 128 ISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLT 187
Query: 610 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE----EWGDPWKEEFYFYMKS 665
A + KAAVA P++ +D + E G P E S
Sbjct: 188 IAAAALSDI-PKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLS 246
Query: 666 YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725
Y + N+ + +L++ GL D S L K + +++ GH
Sbjct: 247 YFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLETKKE---LKVYR---YFGHEY 300
Query: 726 KSGRFERLRE 735
Sbjct: 301 IPAFQTEKLA 310
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 68.4 bits (165), Expect = 3e-13
Identities = 36/270 (13%), Positives = 81/270 (30%), Gaps = 15/270 (5%)
Query: 478 GFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSS 537
+ + W + DG+++P ++ P ++ +G + ++++
Sbjct: 4 DLRRSIAGSRLVWVESFDGSRVPTYVLESGR---APTPGPTVVLVHGGPFAEDSDSWDTF 60
Query: 538 RLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKL 597
SL GF + RG G +W D A A + ++ ++ +
Sbjct: 61 AASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYI 120
Query: 598 CIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKE 657
+ K + + L+ A + + +
Sbjct: 121 MGYSYGGYM-------TLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTG 173
Query: 658 EFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKC 717
M+S SP+++V P L+ ND R + + +L +
Sbjct: 174 GSREIMRSRSPINHVDRIKEPLALIHPQ-NDSRTPLKPLLRLMGELLARGKTFEAHIIP- 231
Query: 718 ELGAGHFSKSGRFERLREAAFTYTFLMRAL 747
AGH + + + ++ FL
Sbjct: 232 --DAGH-AINTMEDAVKILLPAVFFLATQR 258
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 65.5 bits (158), Expect = 7e-12
Identities = 33/273 (12%), Positives = 62/273 (22%), Gaps = 35/273 (12%)
Query: 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLL----YGYGSYEICNDPAFNSSR 538
+Y DG ++ ++ K + P+LL Y A
Sbjct: 25 DYIKREVMVPMRDGVKLY-TVIVIP---KNARNAPILLTRTPYNAKGRANRVPNALTMRE 80
Query: 539 LS------LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF-----TDFIACAEYLI 587
+ ++ G+I IRG + N TD ++L+
Sbjct: 81 VLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLV 140
Query: 588 KNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD---------------- 631
N + ++ + G S G + L K A P VD
Sbjct: 141 HNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWMGDDWFHYGAFRQG 200
Query: 632 VLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRV 691
+ D + S + +
Sbjct: 201 AFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAYD 260
Query: 692 MYSEPAKFVAKLREMKTDDNILLFKCELGAGHF 724
+ + L + K +L +
Sbjct: 261 AFWQGQALDKILAQRKPTVPMLWEQGLWDQEDM 293
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 64.7 bits (156), Expect = 1e-11
Identities = 54/299 (18%), Positives = 87/299 (29%), Gaps = 42/299 (14%)
Query: 468 VLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE 527
V +++E+ L + S G +I ++ K + P ++ G
Sbjct: 42 VFERMESHLKTVEA-----YDVTFSGYRGQRIKGWLLVPKLE---EEKLPCVVQYIGY-- 91
Query: 528 ICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG-------------------- 567
F L G+I + RG G +
Sbjct: 92 -NGGRGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILD 150
Query: 568 -KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 626
+ + FTD + E +E++ I G S GG + AV + KA +
Sbjct: 151 PRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKK-AKALLCD 209
Query: 627 VPFVDVLTTMLDPTIPLTTAEWEEW--GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTA 684
VPF+ + AE + KEE F SY N A+ L +
Sbjct: 210 VPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSV 269
Query: 685 GLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 743
GL D S K I ++ H G F+ + + F
Sbjct: 270 GLMDNICPPSTVFAAYNYYAGPKE---IRIYP---YNNH-EGGGSFQAVEQVKFLKKLF 321
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 61.8 bits (149), Expect = 5e-11
Identities = 34/210 (16%), Positives = 55/210 (26%), Gaps = 18/210 (8%)
Query: 492 SASDGTQIPICIVYRKNLVKLDGSDPL--LLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
SAS G I + G LL G + + N N+ + +
Sbjct: 13 SASMGRDIKVQF--------QGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSV 64
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLI----KNCYCTKEKLCIEGRSAG 605
I + G WY+ + + T+ + N + G S
Sbjct: 65 IMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMS 124
Query: 606 GLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEE--WGDPWKEEFYFYM 663
G + P F A + F++ + I L + W
Sbjct: 125 GGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAW 184
Query: 664 KSYSPVDNVK--AQNYPHILVTAGLNDPRV 691
K P+ + N I V G P
Sbjct: 185 KRNDPMVQIPRLVANNTRIWVYCGNGTPSD 214
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 59.9 bits (144), Expect = 2e-10
Identities = 37/208 (17%), Positives = 66/208 (31%), Gaps = 21/208 (10%)
Query: 492 SASDGTQIPICIVYRKNLVKLDGSDP--LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 549
S S G IP+ L G LL + + ++ + ++ L I
Sbjct: 11 SPSMGRDIPVAF--------LAGGPHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISV 62
Query: 550 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIA--CAEYLIKNCYCTKEKLCIEGRSAGGL 607
+A G + W ++G + F++ ++L N G + GG
Sbjct: 63 VAPAGGAYSMYTNWEQDGS-----KQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGY 117
Query: 608 LIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE--EWGDPWKEEFYFYMKS 665
A+ PD F A + F+ T + I ++ + W K
Sbjct: 118 GAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKW 177
Query: 666 YSPVDNVK--AQNYPHILVTAGLNDPRV 691
+ P + AQN + V + N
Sbjct: 178 HDPWVHASLLAQNNTRVWVWSPTNPGAS 205
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 57.8 bits (139), Expect = 2e-09
Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 3/118 (2%)
Query: 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP 654
+ + G ++GG + + D+F T+ + +
Sbjct: 11 NSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCA---RNQYYTSCMYNGYPSI 67
Query: 655 WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 712
S + + +V I + G +D V + + A+L N+
Sbjct: 68 TTPTANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANV 125
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Score = 47.1 bits (110), Expect = 4e-06
Identities = 34/203 (16%), Positives = 61/203 (30%), Gaps = 15/203 (7%)
Query: 483 NYFTERK-WASASDGTQIPICIVYRKNLVKLDGSDPLLLY--GYGSYEICNDPAFNSSRL 539
NY DG ++ +YR DG P+LL Y +++ +++ L
Sbjct: 1 NYSVASNVMVPMRDGVRLA-VDLYRP---DADGPVPVLLVRNPYDKFDVFAWSTQSTNWL 56
Query: 540 SLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCI 599
+ G+ I RG G+F+ + D ++++ +C + +
Sbjct: 57 EFVRDGYAVVIQDTRGLFASE------GEFVPHVDDEADAEDTLSWILEQAWCDG-NVGM 109
Query: 600 EGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT-TMLDPTIPLTTAEWEEWGDPWKEE 658
G S G+ KA ++ D+ P L+ W
Sbjct: 110 FGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGALSVEALLGWSALIGTG 169
Query: 659 FYFYMKSYSPVDNVKAQNYPHIL 681
P D IL
Sbjct: 170 LITSRSDARPEDAADFVQLAAIL 192
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.5 bits (93), Expect = 5e-04
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 198 VSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYIT 253
+PD + V + + +VID E G +G G + A + + +
Sbjct: 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHA 64
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (86), Expect = 0.003
Identities = 14/160 (8%), Positives = 36/160 (22%), Gaps = 19/160 (11%)
Query: 582 CAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI 641
+ + + G S G I +L D + A + L ++
Sbjct: 91 VSNITRLVKEKGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVF 150
Query: 642 PLTTAEWE---------------EWGDPWKEEFYFYMKSYSPVDNVKAQNYPH-ILVTAG 685
L + + P + + +
Sbjct: 151 LLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHS 210
Query: 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725
+D + + ++ L++ + + L H
Sbjct: 211 YSDELLTLRQTNCLISCLQDYQLSFKLYLDD---LGLHND 247
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 37.2 bits (85), Expect = 0.004
Identities = 29/225 (12%), Positives = 56/225 (24%), Gaps = 26/225 (11%)
Query: 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRG 545
E W S + ++ V PL + G + + P + SL R
Sbjct: 16 KEIIWKSERLKNSRRV-WIFTTGDVT-AEERPLAVLLDGEFWAQSMPVW-PVLTSLTHRQ 72
Query: 546 FIFAIAQIRGGGELGRQWYENGKFLKKKNTF-TDFIACAEYLIKNCYCTKEKLCIEGRSA 604
+ + + +I ++ + G+S
Sbjct: 73 QLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSF 132
Query: 605 GGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMK 664
GGL P+ F ++ + W +E
Sbjct: 133 GGLSALYAGLHWPERFGCVLSQSG-----------------SYWWPHRGGQQEGVLLEKL 175
Query: 665 SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 709
V I++ AG+ +P + A+L +K
Sbjct: 176 KAGEVSA----EGLRIVLEAGIREPMI-MRANQALYAQLHPIKES 215
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 758 | |||
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 100.0 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 99.98 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.98 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.97 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.96 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.91 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.9 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.88 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.83 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.83 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.82 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.81 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.81 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.81 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.8 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.79 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.78 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.78 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.78 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.77 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.77 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.77 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.75 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.7 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.69 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.68 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.68 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.67 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.65 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.65 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.61 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.61 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.6 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.6 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.6 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.58 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.58 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.55 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.55 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.55 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.54 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.54 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.54 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.54 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.53 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.53 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.53 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.53 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.53 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.51 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.5 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.5 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.5 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.49 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.49 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.49 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.46 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.45 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.45 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.45 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.45 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.45 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.45 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.42 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.36 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.36 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.35 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.26 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.26 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.25 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.22 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.18 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.16 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.14 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.14 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.99 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.96 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 98.93 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 98.92 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.9 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.88 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 98.87 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 98.82 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.79 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 98.79 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 98.77 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.64 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.62 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.62 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 98.61 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.61 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.61 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.6 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.6 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.59 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.57 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.56 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.52 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.51 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.51 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.51 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 98.49 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.48 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.46 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.43 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.42 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.42 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.41 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.38 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.37 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.36 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.32 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.32 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.31 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.31 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.28 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.27 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.27 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.23 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.2 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.2 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.18 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.15 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.13 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 98.13 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.1 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.09 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.03 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.02 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.86 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 97.75 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.74 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 97.71 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.67 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.65 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.65 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.65 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.6 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.59 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 97.54 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 97.52 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 97.48 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.48 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.46 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.42 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.4 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.39 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 97.29 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.27 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.25 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.12 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.96 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 96.94 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.81 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 96.68 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 96.49 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.44 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.41 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 96.32 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.16 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.08 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 96.08 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.52 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.44 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 94.9 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.7 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 94.19 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 93.97 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 93.21 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 92.61 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 92.23 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 92.1 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 91.95 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 91.88 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 91.84 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 91.22 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 91.11 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 90.55 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 80.71 |
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=6.6e-52 Score=456.74 Aligned_cols=393 Identities=17% Similarity=0.225 Sum_probs=324.2
Q ss_pred CCCCcccceEEeecCCeeecCCcccccCCCCCHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHccccCCCCCCcEEeC
Q 004368 52 PPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQG 131 (758)
Q Consensus 52 ~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~~ev~~~l~~en~y~~~~l~~~~~~~~~l~~e~~~~~~~~~~s~p~~~g 131 (758)
||++++.++++++||+++.|||+||||.+ +|+|++||++||+||+++|+++ ++++.|.++|+++...++.++|.+.|
T Consensus 7 P~~~~~~~~~~~~hG~~~~DpY~WLed~~--~~~v~~wl~~eN~~t~~~l~~~-~~~~~~~~~~~~~~~~~~~~~p~~~g 83 (430)
T d1qfma1 7 PDVYRDETAIQDYHGHKVCDPYAWLEDPD--SEQTKAFVEAQNKITVPFLEQC-PIRGLYKERMTELYDYPKYSCHFKKG 83 (430)
T ss_dssp CCCCCCTTCEEEETTEEEECTTGGGGCTT--SHHHHHHHHHHHHHHHHHHHSS-THHHHHHHHHHHHTCSCEECCCEEET
T ss_pred CCCcCCCCeeeccCCCEEeeCchhhcCCC--CHHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHhhhcCCceeeeEEeC
Confidence 45556778999999999999999999977 9999999999999999999998 79999999999999888899999999
Q ss_pred cEEEEEEecCCCeeEEEEEEecCCCCCCCCccccCCCCCCCCCceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeC
Q 004368 132 SYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDT 211 (758)
Q Consensus 132 ~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~ 211 (758)
+++||.+..+++++.+++|+.... +.++||||+|+++++ +.+.+.++.+||||+++||+.+.
T Consensus 84 ~~y~~~~~~~~~~~~~~~~~~~~~-----------------~~~evllD~n~la~~-~~~~~~~~~~Spd~~~la~s~d~ 145 (430)
T d1qfma1 84 KRYFYFYNTGLQNQRVLYVQDSLE-----------------GEARVFLDPNILSDD-GTVALRGYAFSEDGEYFAYGLSA 145 (430)
T ss_dssp TEEEEEEECSSCSSCEEEEESSSS-----------------SCCEEEECGGGGCSS-SCEEEEEEEECTTSSEEEEEEEE
T ss_pred CEEEEEEecCCCccceEEeccccC-----------------CCeeeecchhhhccc-ccceecceEecCCCCEEEEEecc
Confidence 999999988888888887765332 478999999999975 46777889999999999999999
Q ss_pred CCCeEEEEEEEECCCCceeeccccCc-ceeEEEecCC-eEEEEEeCC-----------CCCCceEEEEEcCCCCCCcEEE
Q 004368 212 KGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE-ALVYITMDE-----------ILRPDKAWLHKLEADQSNDICL 278 (758)
Q Consensus 212 ~G~e~~~l~v~dl~~g~~~~~~~~~~-~~~~~wspDg-~l~y~~~~~-----------~~~~~~v~~~~l~~~~~~~~~v 278 (758)
+|+|.++|+++|+++|+.+...++++ .++++|++|+ .|+|++.+. .+++.+||+|++|+++.+++++
T Consensus 146 ~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v 225 (430)
T d1qfma1 146 SGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC 225 (430)
T ss_dssp TTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE
T ss_pred ccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccc
Confidence 99999999999999999988777666 4679999999 899998653 3678899999999999999999
Q ss_pred eeecCC-ceeeEEEEcCCCcEEEEEecCC--cceEEEEEeCCCCC-------ceEEeeccccceeeEEeecCCEEEEEEc
Q 004368 279 YHEKDD-IYSLGLQASESKKFLFIASESK--ITRFVFYLDVSKPE-------ELRVLTPRVVGVDTAASHRGNHFFITRR 348 (758)
Q Consensus 279 ~~~~~~-~~~~~~~~S~Dg~~l~~~s~~~--~~~~l~~~d~~~~~-------~~~~l~~~~~~~~~~~s~dg~~l~~~s~ 348 (758)
+++.+. .+.+++..|+||+++++.+... ..+++|++|+.... .+..+..+.....+.+.++|+.+|+.+|
T Consensus 226 ~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn 305 (430)
T d1qfma1 226 AEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTN 305 (430)
T ss_dssp ECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEEC
T ss_pred cccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEecCCceeecccC
Confidence 998764 4666788999999999877553 34689999976532 2345555545555567889999999999
Q ss_pred CCCCCCcEEEEEeCCCCCccee--eecCCCC-ceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeec
Q 004368 349 SDELFNSELLACPVDNTSETTV--LIPHRES-VKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEF 425 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~--l~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~ 425 (758)
.+ +++++|+.++++.+....| ++++.+. ..+..++.++++|++..++++.++|.++++. ++.. ..+.+
T Consensus 306 ~~-a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~--~~~~------~~~~~ 376 (430)
T d1qfma1 306 RH-SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLA--TGAL------LKIFP 376 (430)
T ss_dssp TT-CTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT--TCCE------EEEEC
T ss_pred cc-cccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECC--CCcE------EEecC
Confidence 88 8999999999987766656 7876544 5556677889999999999999999999987 3321 33433
Q ss_pred cCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE--EEEEEeee
Q 004368 426 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS--VLKKIETV 475 (758)
Q Consensus 426 p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~--~~~~~~~~ 475 (758)
+ +.+++.+.+.+++++.++|+++|+++|+++|.||+++++. ++++..++
T Consensus 377 ~-~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~~~~~k~~~v 427 (430)
T d1qfma1 377 L-EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTV 427 (430)
T ss_dssp C-CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCC
T ss_pred C-CCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcceeeEeccCC
Confidence 3 3455656677788999999999999999999999999864 35554443
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.98 E-value=5.8e-32 Score=276.02 Aligned_cols=250 Identities=20% Similarity=0.224 Sum_probs=206.4
Q ss_pred ceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhH
Q 004368 484 YFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 563 (758)
Q Consensus 484 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~ 563 (758)
...+.++++|.||.+|++++++|++. .++.|+||++|||++.+....|......|+++||+|+.+|+||++++|..|
T Consensus 10 ~~~~~v~~~s~dG~~i~~~l~~p~~~---~~~~Pviv~~HGG~~~~~~~~~~~~~~~la~~G~~v~~~d~r~~~~~g~~~ 86 (260)
T d2hu7a2 10 AGSRLVWVESFDGSRVPTYVLESGRA---PTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEW 86 (260)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTS---CSSEEEEEEECSSSSCCCCSSCCHHHHHHHHHTCEEEEECCTTCSSSCHHH
T ss_pred CceEEEEEECCCCCEEEEEEEeCCCC---CCCceEEEEECCCCccCCCccccHHHHHHHhhccccccceeeecccccccc
Confidence 45688999999999999999999765 467899999999988887888998889999999999999999999999999
Q ss_pred HhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCC
Q 004368 564 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPL 643 (758)
Q Consensus 564 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~ 643 (758)
............++|+.++++||.+++ ++++++|+|+|+||++++.+++.+|+.++|+++.+|+.|+......... .
T Consensus 87 ~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~-~ 163 (260)
T d2hu7a2 87 RLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDA-A 163 (260)
T ss_dssp HHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHTCCH-H
T ss_pred ccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhhhccccc-c
Confidence 998887777788999999999999976 6799999999999999999999999999999999999987654321111 0
Q ss_pred ChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCC
Q 004368 644 TTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGH 723 (758)
Q Consensus 644 ~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH 723 (758)
...+.+.-...+. +.+...+|+.+++++++| +||+||++|..||+.++.+++++|++.++++++++|+ ++||
T Consensus 164 -~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~P-~liihG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~---g~~H 235 (260)
T d2hu7a2 164 -FRNFIEQLTGGSR---EIMRSRSPINHVDRIKEP-LALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIP---DAGH 235 (260)
T ss_dssp -HHHHHHHHHCSCH---HHHHHTCGGGCGGGCCSC-EEEEEETTCSSSCSHHHHHHHHHHHHTTCCEEEEEET---TCCS
T ss_pred -ccccccccccccc---ccccccchhhcccccCCC-ceeeecccCceecHHHHHHHHHHHHHCCCCeEEEEEC---cCCC
Confidence 0011110011233 345788999999999988 9999999999999999999999999999999888887 9999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 724 FSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
++.. .....+....+++||.++|+
T Consensus 236 ~~~~-~e~~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 236 AINT-MEDAVKILLPAVFFLATQRE 259 (260)
T ss_dssp SCCB-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-hHhHHHHHHHHHHHHHHHhc
Confidence 7643 33444444557899999874
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.98 E-value=1.4e-30 Score=267.98 Aligned_cols=267 Identities=35% Similarity=0.574 Sum_probs=216.1
Q ss_pred CCCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHH-HHHHcCcEEEEEecCCCCC
Q 004368 480 DTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRL-SLLDRGFIFAIAQIRGGGE 558 (758)
Q Consensus 480 ~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~-~l~~~G~~v~~~~~RG~g~ 558 (758)
|+++|++|++++++.||++|+++|++|++. ++++++|+||++|||++.+..+.+..... .++.+|++++..+.++...
T Consensus 1 ~~~~y~~e~v~~~s~DG~~i~~~l~~P~~~-~~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (280)
T d1qfma2 1 DASDYQTVQIFYPSKDGTKIPMFIVHKKGI-KLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGE 79 (280)
T ss_dssp CGGGEEEEEEEEECTTSCEEEEEEEEETTC-CCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSST
T ss_pred CcccCEEEEEEEECCCCCEEEEEEEEcCCC-CCCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeeccccccccc
Confidence 356788899999999999999999999998 78899999999999999988888877665 4556788888899888888
Q ss_pred CchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCC
Q 004368 559 LGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD 638 (758)
Q Consensus 559 ~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~ 638 (758)
++..+.............++...++.+...+...+..+++++|+|.||+++.+++...+++++|++..+++.|+......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (280)
T d1qfma2 80 YGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKY 159 (280)
T ss_dssp THHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGS
T ss_pred cchhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhccc
Confidence 88888777777777777788888888889999999999999999999999999999999999999999999998765433
Q ss_pred CCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCC-----CCCeEEEeccCCCCCCCChHHHHHHHHHHhc-------
Q 004368 639 PTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----NYPHILVTAGLNDPRVMYSEPAKFVAKLREM------- 706 (758)
Q Consensus 639 ~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~-----~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~------- 706 (758)
...+.. ..........+........+|+.++... ..||+||+||++|++||+.|+++|+++|++.
T Consensus 160 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~~~~~ 236 (280)
T d1qfma2 160 TIGHAW---TTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQ 236 (280)
T ss_dssp TTGGGG---HHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTC
T ss_pred cccccc---eecccCCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhhhhcC
Confidence 222111 1122223334444455566666654432 6778999999999999999999999999766
Q ss_pred CCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 004368 707 KTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSV 753 (758)
Q Consensus 707 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 753 (758)
++++++++++ ++||++.....+.++..+++++||.++|++++.|
T Consensus 237 ~~~~~l~~~~---~~gHgf~~~~~~~~~~~~~~~~fl~k~L~~~~~~ 280 (280)
T d1qfma2 237 NNPLLIHVDT---KAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 280 (280)
T ss_dssp CSCEEEEEES---SCCSSTTCCHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCcEEEEEeC---cCCCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4455566665 9999988777778888888999999999998865
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=1.1e-29 Score=258.56 Aligned_cols=252 Identities=17% Similarity=0.137 Sum_probs=201.9
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC---CCCChHHHHHHHcCcEEEEEecCCCCCCchh
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND---PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~---~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~ 562 (758)
.|++.+...||+++.++|+.|+++ ++++++|+||++|||++.... ..+......++++||+|+.+|+||++++|..
T Consensus 3 ~~~~~~~~~~~~~~~~~l~lP~~~-~~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~~~~~ 81 (258)
T d2bgra2 3 SKKLDFIILNETKFWYQMILPPHF-DKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDK 81 (258)
T ss_dssp EEEEEEEEETTEEEEEEEEECTTC-CTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHH
T ss_pred ceeEEEEEeCCcEEEEEEEECCCc-CCCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCCcchH
Confidence 478888899999999999999998 788899999999997544322 2233445567889999999999999999999
Q ss_pred HHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCC
Q 004368 563 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 642 (758)
Q Consensus 563 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~ 642 (758)
|........+...++|+.++++++++++.+|+++|+++|+|+||.+++.++..+|+++++++..++........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 155 (258)
T d2bgra2 82 IMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD------ 155 (258)
T ss_dssp HHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSB------
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeeccccccccc------
Confidence 99888888888888999999999999999999999999999999999999999999999999988876543221
Q ss_pred CChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCC
Q 004368 643 LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 722 (758)
Q Consensus 643 ~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g 722 (758)
.......+|.+......+....++|+..+.+++.+|+|++||++|++||+.++++++++|+++|+++++++|+ +++
T Consensus 156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~g~~~~~~~~~---g~~ 231 (258)
T d2bgra2 156 -SVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYT---DED 231 (258)
T ss_dssp -HHHHHHHHCCCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEET---TCC
T ss_pred -ccccchhcccccchhhHHHhhcccccccccccccCChheeeecCCCcccHHHHHHHHHHHHHCCCCEEEEEEC---CCC
Confidence 0011122344432233345678899988888754459999999999999999999999999999999999887 999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 723 HFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 723 H~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
|++... ....+....+.+||.++|+.
T Consensus 232 H~~~~~-~~~~~~~~~i~~fl~~~l~~ 257 (258)
T d2bgra2 232 HGIASS-TAHQHIYTHMSHFIKQCFSL 257 (258)
T ss_dssp TTCCSH-HHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCC-ccHHHHHHHHHHHHHHHhcC
Confidence 976432 22233344478999999975
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.7e-30 Score=260.78 Aligned_cols=241 Identities=15% Similarity=0.204 Sum_probs=187.7
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCC-CCCCC--hHHHHHHHcCcEEEEEecCCCCCCchhHHhccccc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN-DPAFN--SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 570 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~-~~~~~--~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~ 570 (758)
.||.+|+++|++|+++ +.++++|+||++|||++... ...|. ...+.|+++||+|+.+|+||++++|.+|.......
T Consensus 10 ~dg~~l~~~l~~P~~~-~~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~~~ 88 (258)
T d1xfda2 10 IDDYNLPMQILKPATF-TDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRR 88 (258)
T ss_dssp ETTEEECCBEEBCSSC-CSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTC
T ss_pred eCCeEEEEEEEECCCc-CCCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhhcc
Confidence 4999999999999998 77788999999999865432 33343 34567899999999999999999999999888777
Q ss_pred CCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCC----ceeEEEEcCCccchhhccCCCCCCCChh
Q 004368 571 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVDVLTTMLDPTIPLTTA 646 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~d~~~~~~~~~~~~~~~ 646 (758)
.+...++|+.++++||++++.+|++||+++|+|+||++++.++...++ .|++.+...|+..+... ....
T Consensus 89 ~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 161 (258)
T d1xfda2 89 LGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLY-------ASAF 161 (258)
T ss_dssp TTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSS-------BHHH
T ss_pred chhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeecc-------cccc
Confidence 778889999999999999999999999999999999999998877654 57777777776543211 0011
Q ss_pred hhhccCCC-CCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCC
Q 004368 647 EWEEWGDP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 647 ~~~e~g~p-~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
.....+.+ .+++. +...+|..++.+...+|+||+||+.|.+||+.++.+++++|++.+.++++++++ +++|++
T Consensus 162 ~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~~~~~~~~~~p---~~~H~~ 235 (258)
T d1xfda2 162 SERYLGLHGLDNRA---YEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYP---DESHYF 235 (258)
T ss_dssp HHHHHCCCSSCCSS---TTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEET---TCCSSC
T ss_pred ccccccccccchHH---hhccchhhhhhhhhcccccccccCCCCCcCHHHHHHHHHHHHHCCCCEEEEEEC---CCCCCC
Confidence 11222333 22222 245677777777755569999999999999999999999999999999998887 999986
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCC
Q 004368 726 KSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 726 ~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
... .........+++||.++|++
T Consensus 236 ~~~-~~~~~~~~~~~~f~~~~~~~ 258 (258)
T d1xfda2 236 TSS-SLKQHLYRSIINFFVECFRI 258 (258)
T ss_dssp CCH-HHHHHHHHHHHHHHTTTTCC
T ss_pred CCC-cCHHHHHHHHHHHHHHhhCC
Confidence 532 22333334578999999875
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=2.4e-24 Score=226.02 Aligned_cols=249 Identities=18% Similarity=0.102 Sum_probs=179.4
Q ss_pred CCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCc
Q 004368 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG 560 (758)
Q Consensus 481 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G 560 (758)
.+.+.++.+++++.||.+|+++++.|++. .++.|+||++||+.+... +......|+++||+|+.+|+||+|..+
T Consensus 50 ~~~~~~~~v~~~s~dG~~l~~~l~~P~~~---~~~~P~Vv~~hG~~~~~~---~~~~~~~~a~~G~~v~~~D~rG~G~s~ 123 (322)
T d1vlqa_ 50 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE---EEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGW 123 (322)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS---CSSEEEEEECCCTTCCCC---CGGGGCHHHHTTCEEEEECCTTCCCSS
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEeccCC---CCCccEEEEecCCCCCcC---cHHHHHHHHhCCCEEEEeeccccCCCC
Confidence 45667889999999999999999999865 467899999999654432 334556899999999999999999876
Q ss_pred hhHHhcccccC---------------------CcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCc
Q 004368 561 RQWYENGKFLK---------------------KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL 619 (758)
Q Consensus 561 ~~~~~~~~~~~---------------------~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~ 619 (758)
........... ....+.|..++++++..+..+|++|++++|+|+||++++.++...| .
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~-~ 202 (322)
T d1vlqa_ 124 LKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-K 202 (322)
T ss_dssp SCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-S
T ss_pred CCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCC-C
Confidence 54322211100 0123578999999999999999999999999999999999888865 6
Q ss_pred eeEEEEcCCccchhhccCCCCCCCChhhhhcc--CCC-CCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHH
Q 004368 620 FKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW--GDP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEP 696 (758)
Q Consensus 620 f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~--g~p-~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~ 696 (758)
++++|+.+|..+...................+ ..+ ..+...+.+..+||..++.++++| +||+||.+|.+||+.++
T Consensus 203 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~i~~P-~Lv~~G~~D~~vp~~~~ 281 (322)
T d1vlqa_ 203 AKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIP-ALFSVGLMDNICPPSTV 281 (322)
T ss_dssp CCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSC-EEEEEETTCSSSCHHHH
T ss_pred ccEEEEeCCccccHHHHHhhccccchhhHHhhhhcCcchhhhHHHHhhhhhHHHHHhcCCCC-EEEEEeCCCCCcCHHHH
Confidence 78888888765433322111111111111111 122 334455667778999999999998 99999999999999998
Q ss_pred HHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 697 AKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 697 ~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
.++++++ +.+.++++|+ ++||... .....+ ..++||.+.|.
T Consensus 282 ~~~~~~~---~~~~~l~~~p---~~~H~~~--~~~~~~---~~~~~l~~~l~ 322 (322)
T d1vlqa_ 282 FAAYNYY---AGPKEIRIYP---YNNHEGG--GSFQAV---EQVKFLKKLFE 322 (322)
T ss_dssp HHHHHHC---CSSEEEEEET---TCCTTTT--HHHHHH---HHHHHHHHHHC
T ss_pred HHHHHHC---CCCeEEEEEC---CCCCCCc--cccCHH---HHHHHHHHHhC
Confidence 8777665 5567788886 8999642 222222 24689998874
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=1.1e-23 Score=219.88 Aligned_cols=250 Identities=15% Similarity=0.115 Sum_probs=178.9
Q ss_pred CCCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCC
Q 004368 480 DTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGEL 559 (758)
Q Consensus 480 ~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~ 559 (758)
..+.+.++.+++++.||.+|+++++.|++. ++.|+||++||+.+... .+...+..|+++||+|+.+|+||+|++
T Consensus 50 ~~~~~~~~~v~~~~~dg~~i~~~l~~P~~~----~~~P~vv~~HG~~~~~~--~~~~~~~~la~~Gy~vi~~D~rG~G~s 123 (318)
T d1l7aa_ 50 PADGVKVYRLTYKSFGNARITGWYAVPDKE----GPHPAIVKYHGYNASYD--GEIHEMVNWALHGYATFGMLVRGQQRS 123 (318)
T ss_dssp SCSSEEEEEEEEEEGGGEEEEEEEEEESSC----SCEEEEEEECCTTCCSG--GGHHHHHHHHHTTCEEEEECCTTTSSS
T ss_pred CCCCeEEEEEEEECCCCcEEEEEEEecCCC----CCceEEEEecCCCCCcc--chHHHHHHHHHCCCEEEEEeeCCCCCC
Confidence 445778899999999999999999999864 67899999999765433 355667889999999999999999987
Q ss_pred chhHHhcccccC--------------CcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEE
Q 004368 560 GRQWYENGKFLK--------------KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 625 (758)
Q Consensus 560 G~~~~~~~~~~~--------------~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 625 (758)
+..+........ ....+.|...+++++..++.+|+++|+++|+|+||.+++.++...++ ++++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~-~~~~~~ 202 (318)
T d1l7aa_ 124 EDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVA 202 (318)
T ss_dssp CCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEE
T ss_pred CCCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCcc-cceEEE
Confidence 654432211111 11335788899999999999999999999999999999999998875 555566
Q ss_pred cCCccchhhccCC--CCCCCChh-h-hhccCCC-CCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHH
Q 004368 626 AVPFVDVLTTMLD--PTIPLTTA-E-WEEWGDP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFV 700 (758)
Q Consensus 626 ~~~~~d~~~~~~~--~~~~~~~~-~-~~e~g~p-~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~ 700 (758)
.+|.......... ...+.... . +...+.. ...+.+..+..+++...++++++| +||+||++|..||+.++.+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~Lii~G~~D~~vp~~~~~~~~ 281 (318)
T d1l7aa_ 203 DYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVP-VLMSIGLIDKVTPPSTVFAAY 281 (318)
T ss_dssp ESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSC-EEEEEETTCSSSCHHHHHHHH
T ss_pred eccccccHHHHhhcccccccchhhhhhhccccccccccccccccccccccccccCCCC-EEEEEECCCCCcCHHHHHHHH
Confidence 6655332222111 11111111 1 1122332 233344445567778888888898 999999999999999999998
Q ss_pred HHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 701 AKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 701 ~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
++|. .+.++++|+ ++||... ....+ .+++||.++|+.
T Consensus 282 ~~l~---~~~~l~~~~---~~gH~~~---~~~~~---~~~~fl~~~LkG 318 (318)
T d1l7aa_ 282 NHLE---TKKELKVYR---YFGHEYI---PAFQT---EKLAFFKQILKG 318 (318)
T ss_dssp HHCC---SSEEEEEET---TCCSSCC---HHHHH---HHHHHHHHHHCC
T ss_pred HHcC---CCcEEEEEC---CCCCCCc---HHHHH---HHHHHHHHhCCC
Confidence 8763 456677776 8999653 22222 357999999973
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.88 E-value=1.1e-22 Score=216.37 Aligned_cols=241 Identities=19% Similarity=0.136 Sum_probs=166.9
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchh
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~ 562 (758)
....+++.++. ||..|+++++.|++. ++.|+||++||..+. ...+......|+++||+|+.+|+||+|+....
T Consensus 103 ~~~~e~v~ip~-dg~~l~g~l~~P~~~----~~~P~Vi~~hG~~~~--~e~~~~~~~~l~~~G~~vl~~D~~G~G~s~~~ 175 (360)
T d2jbwa1 103 SPPAERHELVV-DGIPMPVYVRIPEGP----GPHPAVIMLGGLEST--KEESFQMENLVLDRGMATATFDGPGQGEMFEY 175 (360)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEECCSSS----CCEEEEEEECCSSCC--TTTTHHHHHHHHHTTCEEEEECCTTSGGGTTT
T ss_pred CCCeEEeecCc-CCcccceEEEecCCC----CCceEEEEeCCCCcc--HHHHHHHHHHHHhcCCEEEEEccccccccCcc
Confidence 34568888885 889999998888653 678999999995433 23355566789999999999999999875432
Q ss_pred HHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCC
Q 004368 563 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 642 (758)
Q Consensus 563 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~ 642 (758)
.. .......++.+++++|.....+|++||+|+|+|+||++++.++...| +++|+|+..|+.|+...... .+
T Consensus 176 ~~------~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~~~~~~~~~~--~~ 246 (360)
T d2jbwa1 176 KR------IAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGFSDLDYWDLE--TP 246 (360)
T ss_dssp CC------SCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCSCSTTGGGS--CH
T ss_pred cc------ccccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEcccccHHHHhhh--hh
Confidence 11 11222346677899999999999999999999999999999999887 58999999998886433211 11
Q ss_pred CChhhhh-ccCCCCCHHH-HHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCC
Q 004368 643 LTTAEWE-EWGDPWKEEF-YFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 720 (758)
Q Consensus 643 ~~~~~~~-e~g~p~~~~~-~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 720 (758)
.....+. ..+.....+. ......++....+.++++| +||+||++|. ||+.++.++++++.... .+++++ ++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~Lii~G~~D~-vp~~~~~~l~~~~~~~~--~~l~~~---~~ 319 (360)
T d2jbwa1 247 LTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACP-TYILHGVHDE-VPLSFVDTVLELVPAEH--LNLVVE---KD 319 (360)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSC-EEEEEETTSS-SCTHHHHHHHHHSCGGG--EEEEEE---TT
T ss_pred hhhHHHHHhccCCchHHHHHHHHhhcchhhhHhhCCCC-EEEEEeCCCC-cCHHHHHHHHHhcCCCC--eEEEEE---CC
Confidence 1111111 1133322222 2233455666677788898 9999999997 79999999998875433 234444 47
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 721 AGHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 721 ~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
++|.......... ..+.+||.++|..
T Consensus 320 g~H~~~~~~~~~~---~~i~dWl~~~L~~ 345 (360)
T d2jbwa1 320 GDHCCHNLGIRPR---LEMADWLYDVLVA 345 (360)
T ss_dssp CCGGGGGGTTHHH---HHHHHHHHHHHTS
T ss_pred CCcCCCcChHHHH---HHHHHHHHHHhcc
Confidence 8896432222222 2367899999853
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.83 E-value=2.5e-20 Score=197.40 Aligned_cols=244 Identities=16% Similarity=0.209 Sum_probs=171.3
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCC--CccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhH
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGS--YEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 563 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg--~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~ 563 (758)
.+.+.++.+||++|.+.|+.|++. ++.|+||+.||. ........+....+.|+++||+|+.+|.||.|+++..|
T Consensus 5 ~~~v~ipmrDGv~L~~~vy~P~~~----~~~P~il~~~pyg~~~~~~~~~~~~~~~~~a~~GY~vv~~d~RG~g~S~G~~ 80 (347)
T d1ju3a2 5 ASNVMVPMRDGVRLAVDLYRPDAD----GPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEF 80 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEEECCS----SCEEEEEEEESSCTTCCHHHHTTSCCTHHHHHTTCEEEEEECTTSTTCCSCC
T ss_pred EeCeEEECCCCCEEEEEEEEcCCC----CCEEEEEEEcCCCCccccCcCcccHHHHHHHHCCCEEEEEeeCCccccCCcc
Confidence 466899999999999999999753 689999998862 22222234555678999999999999999999988765
Q ss_pred HhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCC-CCCC
Q 004368 564 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD-PTIP 642 (758)
Q Consensus 564 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~-~~~~ 642 (758)
. ...+...|..++++|+.++.++| +||+++|.|+||+++.++|++.|..++|+|..++..|+...... ..-.
T Consensus 81 ~------~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~gg~ 153 (347)
T d1ju3a2 81 V------PHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGA 153 (347)
T ss_dssp C------TTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTCC
T ss_pred c------cccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhcCCc
Confidence 3 23445579999999999999987 79999999999999999999999999999999999886432100 0000
Q ss_pred CChhh---h--------------------------------------------------------hccC-CCCCHHHHHH
Q 004368 643 LTTAE---W--------------------------------------------------------EEWG-DPWKEEFYFY 662 (758)
Q Consensus 643 ~~~~~---~--------------------------------------------------------~e~g-~p~~~~~~~~ 662 (758)
+.... | ..+. .|... ++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 230 (347)
T d1ju3a2 154 LSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDND---ES 230 (347)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCSCC---HH
T ss_pred cchhhHHHHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcccch---hh
Confidence 00000 0 0000 11111 23
Q ss_pred HHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCC-----------hHH
Q 004368 663 MKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG-----------RFE 731 (758)
Q Consensus 663 l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~-----------~~~ 731 (758)
+.+.+|+.++.++++| +|+++|..|..++ .+.+++.+++. +.+.++++-+ .+|..... ...
T Consensus 231 w~~~~~~~~~~~i~vP-~L~i~G~~D~~~~--~~~~~~~~~~~-~~~~~liigp----w~H~~~~~~~~~~~~g~~~~~~ 302 (347)
T d1ju3a2 231 WQSISLFERLGGLATP-ALITAGWYDGFVG--ESLRTFVAVKD-NADARLVVGP----WSHSNLTGRNADRKFGIAATYP 302 (347)
T ss_dssp HHTTCCHHHHTTCCCC-EEEEEEEECTTHH--HHHHHHHHHTT-TSCEEEEEEE----EESSCCSSEETTEECCGGGSCC
T ss_pred hhcCCHHHHhhcCCCC-EEEeccccCCCcc--hhHHHHHHhhc-cCCceEEEcC----ccccCcccccCCCCCCcccccc
Confidence 4566888888999998 9999999997654 57788888875 4455666655 34432110 001
Q ss_pred HHHHHHHHHHHHHHhcCCCC
Q 004368 732 RLREAAFTYTFLMRALSMLP 751 (758)
Q Consensus 732 ~~~~~~~~~~fl~~~l~~~~ 751 (758)
..+.....++||+++|+...
T Consensus 303 ~~~~~~~~l~wfD~~LKg~~ 322 (347)
T d1ju3a2 303 IQEATTMHKAFFDRHLRGET 322 (347)
T ss_dssp HHHHHHHHHHHHHHHTSCCT
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 12223346899999997553
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.83 E-value=3.3e-20 Score=198.49 Aligned_cols=150 Identities=19% Similarity=0.252 Sum_probs=121.1
Q ss_pred CCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecC--CCccCCC-------CCCChHHHHHHHcCcEEEEE
Q 004368 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYG--SYEICND-------PAFNSSRLSLLDRGFIFAIA 551 (758)
Q Consensus 481 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hG--g~~~~~~-------~~~~~~~~~l~~~G~~v~~~ 551 (758)
...++.+.+.++.+||++|.+.|+.|++. ++.|+||+.|+ +.+.... ..+....+.|+++||+|+.+
T Consensus 19 ~~~~~~~~v~i~~rDG~~L~~~v~~P~~~----~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~ 94 (381)
T d1mpxa2 19 SNDYIKREVMIPMRDGVKLHTVIVLPKGA----KNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQ 94 (381)
T ss_dssp TCSEEEEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEE
T ss_pred ccCceEEEEEEECCCCCEEEEEEEEeCCC----CCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEE
Confidence 34667788999999999999999999764 68999999875 2111111 11234457899999999999
Q ss_pred ecCCCCCCchhHHhccc-----ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEc
Q 004368 552 QIRGGGELGRQWYENGK-----FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 626 (758)
Q Consensus 552 ~~RG~g~~G~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 626 (758)
|.||.|+++..|...+. .....++..|+.++++||.++..++.+||+++|+|+||+++++++++.|+.++|+|+.
T Consensus 95 d~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~ 174 (381)
T d1mpxa2 95 DVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPE 174 (381)
T ss_dssp ECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred ecCccCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeee
Confidence 99999998877654322 2333567899999999999998888999999999999999999999999999999999
Q ss_pred CCccchhh
Q 004368 627 VPFVDVLT 634 (758)
Q Consensus 627 ~~~~d~~~ 634 (758)
+|+.|...
T Consensus 175 ~~~~d~~~ 182 (381)
T d1mpxa2 175 SPMIDGWM 182 (381)
T ss_dssp SCCCCTTT
T ss_pred cccccccc
Confidence 99998643
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.82 E-value=1.1e-19 Score=189.93 Aligned_cols=248 Identities=20% Similarity=0.202 Sum_probs=159.3
Q ss_pred CCCCCceeEEEEeeCCCCe-EEEEEEEeeccccccCCCCCEEEEecCCCccCCC-CCCChHHHHHHH-cCcEEEEEecCC
Q 004368 479 FDTNNYFTERKWASASDGT-QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLD-RGFIFAIAQIRG 555 (758)
Q Consensus 479 ~~~~~~~~~~~~~~s~dG~-~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~-~G~~v~~~~~RG 555 (758)
.....+..+++.+++.||. +|++.++.|++. +++.|+|||+|||...... ..+......++. .||+|+.+|||.
T Consensus 43 ~~~~~v~~~~~~~~~~~g~~~i~~~~~~P~~~---~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl 119 (317)
T d1lzla_ 43 LSFDGVSLRELSAPGLDGDPEVKIRFVTPDNT---AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRL 119 (317)
T ss_dssp CCCTTEEEEEEEECCSTTCCCEEEEEEEESSC---CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCC
T ss_pred CCCCCceEEEEEEecCCCCceEEEEEECCCCC---CCCCcEEEEecCcccccccccccchHHHhHHhhcCCccccccccc
Confidence 3445667788999999986 699999999864 4678999999998443322 234445566665 599999999998
Q ss_pred CCCCchhHHhcccccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhCCC----ceeEEEEcCC
Q 004368 556 GGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVP 628 (758)
Q Consensus 556 ~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~ 628 (758)
..+... ...++|+.+++.|+.++ ..+|++||+|+|.|+||++++.++.+.++ .....+...+
T Consensus 120 ~pe~~~-----------~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~ 188 (317)
T d1lzla_ 120 APETTF-----------PGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIP 188 (317)
T ss_dssp TTTSCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESC
T ss_pred cccccc-----------cccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhcccccccccccccc
Confidence 876432 24468899999888654 34799999999999999999888775332 1233333333
Q ss_pred ccchhh-cc---CCCCCC-CChhh----h-----hccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCCh
Q 004368 629 FVDVLT-TM---LDPTIP-LTTAE----W-----EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYS 694 (758)
Q Consensus 629 ~~d~~~-~~---~~~~~~-~~~~~----~-----~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~ 694 (758)
..+... .. .....+ +.... + .....+.++... ...+|.........||+||+||++|. ...
T Consensus 189 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pp~li~~g~~D~--l~~ 263 (317)
T d1lzla_ 189 ELDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVS---IYAAPSRATDLTGLPPTYLSTMELDP--LRD 263 (317)
T ss_dssp CCCTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCC---TTTCGGGCSCCTTCCCEEEEEETTCT--THH
T ss_pred cccccccccccccccccchhhhhhhHHHHhhhccccccCCCCchhc---cccCchhhhhccCCCCeEEEECCCCC--CHH
Confidence 322111 00 000001 11000 0 000111111100 01233333233356779999999995 456
Q ss_pred HHHHHHHHHHhcCCCCceEEEEecCCCCCCCC--CChHHHHHHHHHHHHHHHHhcC
Q 004368 695 EPAKFVAKLREMKTDDNILLFKCELGAGHFSK--SGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 695 ~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~--~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
++++|+++|+++|+++++++|+ +++|++. .......+...+.++||.++|+
T Consensus 264 ~~~~~~~~L~~~G~~v~~~~~~---g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 264 EGIEYALRLLQAGVSVELHSFP---GTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp HHHHHHHHHHHTTCCEEEEEET---TCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCCEEEEEEC---cCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999888887 9999763 2223334445667899999886
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.81 E-value=1.1e-19 Score=183.77 Aligned_cols=191 Identities=17% Similarity=0.141 Sum_probs=143.1
Q ss_pred EEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHH
Q 004368 500 PICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF 579 (758)
Q Consensus 500 ~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~ 579 (758)
.+.|++|++. .+++.|+||++||..+.. ..+......|+++||+|+.+|++|.++....+ ..|+
T Consensus 38 ~~~ly~P~~~--~~g~~P~Vv~~HG~~g~~--~~~~~~a~~lA~~Gy~V~~~d~~~~~~~~~~~------------~~d~ 101 (260)
T d1jfra_ 38 GGTIYYPTST--ADGTFGAVVISPGFTAYQ--SSIAWLGPRLASQGFVVFTIDTNTTLDQPDSR------------GRQL 101 (260)
T ss_dssp CEEEEEESCC--TTCCEEEEEEECCTTCCG--GGTTTHHHHHHTTTCEEEEECCSSTTCCHHHH------------HHHH
T ss_pred CEEEEEcCCC--CCCCccEEEEECCCCCCH--HHHHHHHHHHHhCCCEEEEEeeCCCcCCchhh------------HHHH
Confidence 3667888763 356789999999965443 34667788999999999999999887665432 3688
Q ss_pred HHHHHHHHHc----CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCC
Q 004368 580 IACAEYLIKN----CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPW 655 (758)
Q Consensus 580 ~~~~~~l~~~----~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~ 655 (758)
.+++++|.+. +.+|++||+++|+|+||.+++.++...+ .++|+|+.+|+...
T Consensus 102 ~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~~~~~----------------------- 157 (260)
T d1jfra_ 102 LSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTGWNTD----------------------- 157 (260)
T ss_dssp HHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCCSC-----------------------
T ss_pred HHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeeccccc-----------------------
Confidence 8899998875 6789999999999999999999998865 67888887774211
Q ss_pred CHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHH
Q 004368 656 KEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLRE 735 (758)
Q Consensus 656 ~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~ 735 (758)
....+.++| +|++||++|..||+.+..+++.++...+.+.+++.++ +++|++.......+..
T Consensus 158 --------------~~~~~~~~P-~l~i~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~i~---ga~H~~~~~~~~~~~~ 219 (260)
T d1jfra_ 158 --------------KTWPELRTP-TLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELR---GASHFTPNTSDTTIAK 219 (260)
T ss_dssp --------------CCCTTCCSC-EEEEEETTCSSSCTTTTHHHHHHHSCTTSCEEEEEET---TCCTTGGGSCCHHHHH
T ss_pred --------------ccccccccc-eeEEecCCCCCCCHHHHHHHHHHhcccCCCEEEEEEC---CCccCCCCCChHHHHH
Confidence 012234577 9999999999999988666666665566666666665 9999865333333333
Q ss_pred HHHHHHHHHHhcCCC
Q 004368 736 AAFTYTFLMRALSML 750 (758)
Q Consensus 736 ~~~~~~fl~~~l~~~ 750 (758)
. +++||.++|+..
T Consensus 220 ~--~~~wl~~~L~~d 232 (260)
T d1jfra_ 220 Y--SISWLKRFIDSD 232 (260)
T ss_dssp H--HHHHHHHHHSCC
T ss_pred H--HHHHHHHHhcCc
Confidence 3 579999998754
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.81 E-value=8.3e-20 Score=193.81 Aligned_cols=250 Identities=16% Similarity=0.149 Sum_probs=161.9
Q ss_pred CCCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCC---CCChHHHHHHHcCcEEEEEecCCC
Q 004368 480 DTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP---AFNSSRLSLLDRGFIFAIAQIRGG 556 (758)
Q Consensus 480 ~~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~---~~~~~~~~l~~~G~~v~~~~~RG~ 556 (758)
+.++...+..++++.||..|++.++.|++. +++.|+|||+|||....... .+...++.++++|++|+.+|||.+
T Consensus 73 ~~~~v~~~~~~i~~~dg~~i~~~iy~P~~~---~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla 149 (358)
T d1jkma_ 73 DRDDVETSTETILGVDGNEITLHVFRPAGV---EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNA 149 (358)
T ss_dssp CCCCEEEEEEEEECTTSCEEEEEEEEETTC---CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCCCccEEEEEEeCCCCCEEEEEEEecCCC---CCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeeccc
Confidence 345667788899999999999999999865 46789999999984433222 233456788899999999999987
Q ss_pred CCCchhHHhcccccCCcChHhHHHHHHHHHHHcC-CCCCCcEEEEEeChhHHHHHHHHhh-----CCCceeEEEEcCCcc
Q 004368 557 GELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC-YCTKEKLCIEGRSAGGLLIGAVLNM-----RPDLFKAAVAAVPFV 630 (758)
Q Consensus 557 g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~-----~p~~f~a~v~~~~~~ 630 (758)
++...+ ...+..++|+.++++||.++. ..|++||+|+|.|+||+|++.++.. .+..+.+.++.+|++
T Consensus 150 ~~~~pe-------~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~ 222 (358)
T d1jkma_ 150 WTAEGH-------HPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYI 222 (358)
T ss_dssp EETTEE-------CCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCC
T ss_pred cccccc-------CCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCcccccccccccee
Confidence 543211 223456899999999998762 3578999999999999998776643 234678899999987
Q ss_pred chhhccCCCCCCC---ChhhhhccCCCCCHH-HHHHHHhc--------Cccccc------CCCCCCeEEEeccCCCCCCC
Q 004368 631 DVLTTMLDPTIPL---TTAEWEEWGDPWKEE-FYFYMKSY--------SPVDNV------KAQNYPHILVTAGLNDPRVM 692 (758)
Q Consensus 631 d~~~~~~~~~~~~---~~~~~~e~g~p~~~~-~~~~l~~~--------sp~~~i------~~~~~P~~Li~~G~~D~~V~ 692 (758)
+...... +... ........+...... ....+..| +|+... .....||+||++|++|+.+
T Consensus 223 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l~- 299 (358)
T d1jkma_ 223 SGGYAWD--HERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLR- 299 (358)
T ss_dssp CCCTTSC--HHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTTH-
T ss_pred ccccCcc--chhhcccccchhcccccccchhhhhhHHhhcCCccCCccCccccccccchhhccCCCCEEEEECCCCCCH-
Confidence 7432110 0000 000000000000000 00011111 111110 0115788999999999654
Q ss_pred ChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC---CC-hHHHHHH-HHHHHHHHHHh
Q 004368 693 YSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK---SG-RFERLRE-AAFTYTFLMRA 746 (758)
Q Consensus 693 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~---~~-~~~~~~~-~~~~~~fl~~~ 746 (758)
.++.+|+++|+++|+++++++++ +.+|++. .. .....++ ..++..|+..+
T Consensus 300 -~e~~~~~~~L~~aGv~v~~~~~~---g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~ 354 (358)
T d1jkma_ 300 -DEGIAFARRLARAGVDVAARVNI---GLVHGADVIFRHWLPAALESTVRDVAGFAADR 354 (358)
T ss_dssp -HHHHHHHHHHHHTTCCEEEEEET---TCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHCCCcEEEEEEC---CCccchhhhccccCCHHHHHHHHHHHHHHHHH
Confidence 69999999999999999888887 9999751 11 1233333 34466787664
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.81 E-value=3.9e-19 Score=191.71 Aligned_cols=252 Identities=14% Similarity=0.075 Sum_probs=175.1
Q ss_pred CCCCCCceeEEEEeeCC-----CCe--EEEEEEEeeccccccCCCCCEEEEecC--C-----------------------
Q 004368 478 GFDTNNYFTERKWASAS-----DGT--QIPICIVYRKNLVKLDGSDPLLLYGYG--S----------------------- 525 (758)
Q Consensus 478 ~~~~~~~~~~~~~~~s~-----dG~--~i~~~l~~p~~~~~~~~~~P~vl~~hG--g----------------------- 525 (758)
.|+.+.++.|.+++.+. ||+ .|.+.|+.|++. ++.|+|+...- .
T Consensus 15 ~~~~~~~~re~v~v~~~~dt~rDG~~d~l~~di~rP~~~----~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (405)
T d1lnsa3 15 TFDSSLLEREVLWVESPVDSEQRGENDLIKIQIIRPKST----EKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTS 90 (405)
T ss_dssp CSCGGGCEEEEEEEECSCCTTCSSSCCEEEEEEEECCCS----SCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCS
T ss_pred eecCCCceEeEEEEeCCCCCCCCCCEeEEEEEEEccCCC----CCceEEEEeCCcCCCCccccccccccccccccccccc
Confidence 46656666677777654 899 599998888764 57899986432 1
Q ss_pred --------------------------CccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHH
Q 004368 526 --------------------------YEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF 579 (758)
Q Consensus 526 --------------------------~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~ 579 (758)
.............+.|+++||+|+.+|.||.|+++..|.. ....+.+|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~~~-----~~~~e~~D~ 165 (405)
T d1lnsa3 91 HEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTS-----GDYQQIYSM 165 (405)
T ss_dssp EECCCCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCCT-----TSHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchHHHHhCCCEEEEECCCCCCCCCCcccc-----CChhhhhhH
Confidence 0011111122455789999999999999999999887653 233467899
Q ss_pred HHHHHHHHHcCCCC--------------CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCCh
Q 004368 580 IACAEYLIKNCYCT--------------KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTT 645 (758)
Q Consensus 580 ~~~~~~l~~~~~~d--------------~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~ 645 (758)
.++|+||.++...+ ..|||++|.||||++..++++..|..++|+|..+++.|+...+.........
T Consensus 166 ~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~ 245 (405)
T d1lnsa3 166 TAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSP 245 (405)
T ss_dssp HHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCC
T ss_pred HHHHHHHHhcccccccccccccccccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccc
Confidence 99999997643222 2699999999999999999999999999999999999976543221110000
Q ss_pred --------hh------------------------------hhccC-CCCCHHHHHHHHhcCcccccCCCCCCeEEEeccC
Q 004368 646 --------AE------------------------------WEEWG-DPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGL 686 (758)
Q Consensus 646 --------~~------------------------------~~e~g-~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~ 686 (758)
.. ..+.. .+... +++.+.+|..+++++++| +|+++|.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~w~~~s~~~~~~~I~vP-~L~i~Gw 321 (405)
T d1lnsa3 246 GGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYN---QFWHDRNYLINTDKVKAD-VLIVHGL 321 (405)
T ss_dssp TTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCC---HHHHTTBGGGGGGGCCSE-EEEEEET
T ss_pred cchhhhhhhhhhccccccccccchhhhchhhhhhccchhhhhhhhccccch---hhhhhcChhhhhhcCCCC-EEEEEec
Confidence 00 00011 11111 345778999999999998 9999999
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCC--hHHHHHHHHHHHHHHHHhcCCC
Q 004368 687 NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG--RFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 687 ~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
+|..|++.++.+++++|++ +.+.++++- ..+|..... ..... ..+++||.++|+..
T Consensus 322 ~D~~v~~~~~~~~y~al~~-~~~~~Lilg----pw~H~~~~~~~~~d~~---~~~~~wFD~~LkG~ 379 (405)
T d1lnsa3 322 QDWNVTPEQAYNFWKALPE-GHAKHAFLH----RGAHIYMNSWQSIDFS---ETINAYFVAKLLDR 379 (405)
T ss_dssp TCCSSCTHHHHHHHHHSCT-TCCEEEEEE----SCSSCCCTTBSSCCHH---HHHHHHHHHHHTTC
T ss_pred cCCCCCHHHHHHHHHHHHh-CCCcEEEEe----CCCCCCCcccccchHH---HHHHHHHHHHhCCC
Confidence 9999999999999999974 445556554 478865321 11222 23578999999654
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.80 E-value=2.2e-19 Score=186.63 Aligned_cols=240 Identities=14% Similarity=0.084 Sum_probs=157.4
Q ss_pred eeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccC-CCCCCChHHHHHHHcC-cEEEEEecCCCCCCchh
Q 004368 485 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC-NDPAFNSSRLSLLDRG-FIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 485 ~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~~G-~~v~~~~~RG~g~~G~~ 562 (758)
.++.++++. +|.+|.+.+++|++. +++.|+||++|||.... ....+......++.+| +.|+.+|||...+...
T Consensus 45 ~~~~~~~~~-~g~~i~~~~y~P~~~---~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~p~~~~- 119 (308)
T d1u4na_ 45 EVREFDMDL-PGRTLKVRMYRPEGV---EPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHKF- 119 (308)
T ss_dssp EEEEEEEEE-TTEEEEEEEEECTTC---CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSCT-
T ss_pred cEEEEEEec-CCceEEEEEEecccc---CCCCCEEEEEecCeeeeeccccccchhhhhhhccccccccccccccccccc-
Confidence 456666665 788999999999865 35789999999984333 3344555667777775 5688899998776433
Q ss_pred HHhcccccCCcChHhHHHHHHHHHHHcC---CCCCCcEEEEEeChhHHHHHHHHhhCCC----ceeEEEEcCCccchhhc
Q 004368 563 WYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVDVLTT 635 (758)
Q Consensus 563 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~d~~~~ 635 (758)
...++|+.++++|+.++. .+|++||+++|+|+||+++++++....+ ...+..+..+..+....
T Consensus 120 ----------p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (308)
T d1u4na_ 120 ----------PAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPA 189 (308)
T ss_dssp ----------THHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCCCCCCTT
T ss_pred ----------ccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCcccccccccccccccc
Confidence 335689999999998764 6899999999999999999888775432 33555555655442211
Q ss_pred cC-------CCCCCCChhh----hhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHH
Q 004368 636 ML-------DPTIPLTTAE----WEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLR 704 (758)
Q Consensus 636 ~~-------~~~~~~~~~~----~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~ 704 (758)
.. .......... +..+.....+.. ....++.........||+||+||++|..+ .++++|+++|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~d~~~~Pp~li~~g~~D~l~--~~~~~~~~~L~ 264 (308)
T d1u4na_ 190 HPPASIEENAEGYLLTGGMSLWFLDQYLNSLEELT---HPWFSPVLYPDLSGLPPAYIATAQYDPLR--DVGKLYAEALN 264 (308)
T ss_dssp SCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGG---CTTTCGGGCSCCTTCCCEEEEEEEECTTH--HHHHHHHHHHH
T ss_pred cccchhhhccccccccchhhhhhhhcccCcccccc---chhhhhhhchhhcCCCCeeEEecCcCCch--HHHHHHHHHHH
Confidence 10 0000000000 001111100000 01124444444447788999999999765 59999999999
Q ss_pred hcCCCCceEEEEecCCCCCCCC---CChHHHHHHHHHHHHHHHHhc
Q 004368 705 EMKTDDNILLFKCELGAGHFSK---SGRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 705 ~~~~~~~~~~~~~~~~~gH~~~---~~~~~~~~~~~~~~~fl~~~l 747 (758)
++|+++++++|+ +++|++. ....+..+....+.+||.+.|
T Consensus 265 ~~G~~v~~~~~~---g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 265 KAGVKVEIENFE---DLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HTTCCEEEEEEE---EEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEEEC---CCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999998 8899752 122333444555778988775
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.79 E-value=1.7e-19 Score=186.72 Aligned_cols=224 Identities=15% Similarity=0.072 Sum_probs=147.9
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCC-chhHHh
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGEL-GRQWYE 565 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~-G~~~~~ 565 (758)
....+++.||..|++|.+.|++. ..++.|+||++||..+.. ..|...+..|+++||.|+.+|+||++|. ...+..
T Consensus 5 ~~h~~~~~dg~~l~~w~~~p~~~--~~~~~~~Vvi~HG~~~~~--~~~~~~a~~L~~~G~~Vi~~D~rGh~G~S~g~~~~ 80 (302)
T d1thta_ 5 IAHVLRVNNGQELHVWETPPKEN--VPFKNNTILIASGFARRM--DHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDE 80 (302)
T ss_dssp EEEEEEETTTEEEEEEEECCCTT--SCCCSCEEEEECTTCGGG--GGGHHHHHHHHTTTCCEEEECCCBCC--------C
T ss_pred eeeEEEcCCCCEEEEEEecCcCC--CCCCCCEEEEeCCCcchH--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccC
Confidence 45567889999999998888764 335789999999944332 3577788899999999999999997433 222221
Q ss_pred cccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccC---CCCCC
Q 004368 566 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML---DPTIP 642 (758)
Q Consensus 566 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~---~~~~~ 642 (758)
. .-....+|+.++++||..++ +++|+++|+||||.+++.++.. ..++++|+.+|+.++..+.. ....+
T Consensus 81 ~----~~~~~~~dl~~vi~~l~~~~---~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~~~~~~~~~~~~~~~ 151 (302)
T d1thta_ 81 F----TMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVNLRDTLEKALGFDYL 151 (302)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSCHHHHHHHHHSSCGG
T ss_pred C----CHHHHHHHHHHHHHhhhccC---CceeEEEEEchHHHHHHHHhcc--cccceeEeecccccHHHHHHHHHhhccc
Confidence 1 11124578999999998874 5789999999999998877764 34789999999887543211 00000
Q ss_pred -CChhhhhcc----CCCCCHHHH-HHHHhc------CcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCC
Q 004368 643 -LTTAEWEEW----GDPWKEEFY-FYMKSY------SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 710 (758)
Q Consensus 643 -~~~~~~~e~----g~p~~~~~~-~~l~~~------sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~ 710 (758)
.......+. +.......| ...... ++...++++++| +|++||.+|..||+.+++++++.+... ..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-vLii~G~~D~~V~~~~~~~l~~~i~s~--~~ 228 (302)
T d1thta_ 152 SLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVP-LIAFTANNDDWVKQEEVYDMLAHIRTG--HC 228 (302)
T ss_dssp GSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSC-EEEEEETTCTTSCHHHHHHHHTTCTTC--CE
T ss_pred hhhhhhccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCC-EEEEEeCCCCccCHHHHHHHHHhCCCC--Cc
Confidence 000000000 000011111 111111 244567788998 999999999999999999998877532 34
Q ss_pred ceEEEEecCCCCCCCCCCh
Q 004368 711 NILLFKCELGAGHFSKSGR 729 (758)
Q Consensus 711 ~~~~~~~~~~~gH~~~~~~ 729 (758)
++++++ +++|....+.
T Consensus 229 kl~~~~---g~~H~l~e~~ 244 (302)
T d1thta_ 229 KLYSLL---GSSHDLGENL 244 (302)
T ss_dssp EEEEET---TCCSCTTSSH
T ss_pred eEEEec---CCCcccccCh
Confidence 566665 9999876553
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.78 E-value=1.1e-19 Score=180.81 Aligned_cols=192 Identities=16% Similarity=0.138 Sum_probs=136.6
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHh
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 565 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~ 565 (758)
.|.+++++.||.++++++..|.+ ++.|+||++|+++|... ........|+++||+|+++|+.+.++.+..+..
T Consensus 3 ~e~v~~~~~dg~~~~a~~~~P~~-----~~~P~vl~~h~~~G~~~--~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~~~~ 75 (233)
T d1dina_ 3 TEGISIQSYDGHTFGALVGSPAK-----APAPVIVIAQEIFGVNA--FMRETVSWLVDQGYAAVCPDLYARQAPGTALDP 75 (233)
T ss_dssp CTTCCEECTTSCEECEEEECCSS-----SSEEEEEEECCTTBSCH--HHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCT
T ss_pred ceEEEEEcCCCCEEEEEEECCCC-----CCceEEEEeCCCCCCCH--HHHHHHHHHHhcCCcceeeeeccCCCcCcccCh
Confidence 46678999999999999888864 47899999998766432 223345788999999999998776654332110
Q ss_pred c-------c----cccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh
Q 004368 566 N-------G----KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT 634 (758)
Q Consensus 566 ~-------~----~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~ 634 (758)
. . ..........|+.+++++|...+. +.+||+++|+|+||.++..++.. +. ..++++..|..-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~-~~-~~~~~~~~~~~~--- 149 (233)
T d1dina_ 76 QDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAK-GY-VDRAVGYYGVGL--- 149 (233)
T ss_dssp TSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHH-TC-SSEEEEESCSCG---
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeecccc-cc-cceecccccccc---
Confidence 0 0 011113456899999999988876 45899999999999999988876 33 455554433100
Q ss_pred ccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEE
Q 004368 635 TMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILL 714 (758)
Q Consensus 635 ~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~ 714 (758)
.++...+.+++.| +|++||++|++||..+..++.+.++ .+.+.++++
T Consensus 150 -------------------------------~~~~~~~~~i~~P-vl~~~G~~D~~vp~e~~~~~~~~~~-~~~~~~~~~ 196 (233)
T d1dina_ 150 -------------------------------EKQLNKVPEVKHP-ALFHMGGQDHFVPAPSRQLITEGFG-ANPLLQVHW 196 (233)
T ss_dssp -------------------------------GGGGGGGGGCCSC-EEEEEETTCTTSCHHHHHHHHHHHT-TCTTEEEEE
T ss_pred -------------------------------ccchhhhhccCCc-ceeeecccccCCCHHHHHHHHHHHh-cCCCEEEEE
Confidence 0112223345677 9999999999999988888877665 566777777
Q ss_pred EEecCCCCCCCC
Q 004368 715 FKCELGAGHFSK 726 (758)
Q Consensus 715 ~~~~~~~gH~~~ 726 (758)
|+ +++|++.
T Consensus 197 y~---ga~HgF~ 205 (233)
T d1dina_ 197 YE---EAGHSFA 205 (233)
T ss_dssp ET---TCCTTTT
T ss_pred EC---CCCcCCC
Confidence 76 9999864
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.78 E-value=4.8e-19 Score=178.56 Aligned_cols=196 Identities=15% Similarity=0.201 Sum_probs=141.8
Q ss_pred EEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC-CCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhc
Q 004368 488 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 566 (758)
Q Consensus 488 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~ 566 (758)
.+.|-..+..+ +.|+.|++ .+.|+||++|||++.... ..|...++.|+++||+|+.+|||.+++...
T Consensus 41 dv~Yg~~~~~~--lDiy~P~~-----~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~~~----- 108 (261)
T d2pbla1 41 NLSYGEGDRHK--FDLFLPEG-----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVRI----- 108 (261)
T ss_dssp EEESSSSTTCE--EEEECCSS-----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSCH-----
T ss_pred CcCCCCCcCeE--EEEeccCC-----CCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeecccccccccccC-----
Confidence 34443333333 34556653 357999999999865443 446667789999999999999998776432
Q ss_pred ccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCC------CceeEEEEcCCccchhhccCCCC
Q 004368 567 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP------DLFKAAVAAVPFVDVLTTMLDPT 640 (758)
Q Consensus 567 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p------~~f~a~v~~~~~~d~~~~~~~~~ 640 (758)
...++|+.++++|+.++. ++||+|+|+|+||+|++.++.... ..+++++..+|+.|+......
T Consensus 109 ------p~~~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 177 (261)
T d2pbla1 109 ------SEITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRT-- 177 (261)
T ss_dssp ------HHHHHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGS--
T ss_pred ------chhHHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhhh--
Confidence 245799999999999874 689999999999999988776543 257899999998886432210
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCC
Q 004368 641 IPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 720 (758)
Q Consensus 641 ~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 720 (758)
.. . ..++ .+++. ....||+.++.+...| +||+||++|+.|+..|+++|+++|+. +.+.++ +
T Consensus 178 --~~-~--~~~~--~~~~~---~~~~SP~~~~~~~~~P-~li~~G~~D~~~~~~qs~~~~~~l~~-----~~~~~~---~ 238 (261)
T d2pbla1 178 --SM-N--EKFK--MDADA---AIAESPVEMQNRYDAK-VTVWVGGAERPAFLDQAIWLVEAWDA-----DHVIAF---E 238 (261)
T ss_dssp --TT-H--HHHC--CCHHH---HHHTCGGGCCCCCSCE-EEEEEETTSCHHHHHHHHHHHHHHTC-----EEEEET---T
T ss_pred --hh-c--cccc--CCHHH---HHHhCchhhcccCCCe-EEEEEecCCCchHHHHHHHHHHHhCC-----CceEeC---C
Confidence 00 0 1112 23332 3578999999887766 99999999999999999999999964 345554 8
Q ss_pred CCCCC
Q 004368 721 AGHFS 725 (758)
Q Consensus 721 ~gH~~ 725 (758)
.+|+.
T Consensus 239 ~~HF~ 243 (261)
T d2pbla1 239 KHHFN 243 (261)
T ss_dssp CCTTT
T ss_pred CCchh
Confidence 88853
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.78 E-value=2.9e-18 Score=178.21 Aligned_cols=236 Identities=18% Similarity=0.142 Sum_probs=156.0
Q ss_pred CceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCC-CCCCChHHHHHHH-cCcEEEEEecCCCCCCc
Q 004368 483 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN-DPAFNSSRLSLLD-RGFIFAIAQIRGGGELG 560 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~G 560 (758)
...++.+++++.+| .|++.++.|+. +.|+||++|||..... ...+...+..+++ .|++|+.+|||.+.+..
T Consensus 53 ~~~~~~~~i~~~~g-~i~~~iy~P~~------~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrlap~~~ 125 (311)
T d1jjia_ 53 VERVEDRTIKGRNG-DIRVRVYQQKP------DSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHK 125 (311)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEESSS------SEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSC
T ss_pred cceEEEEEEeCCCC-cEEEEEEcCCC------CceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEeccccccccc
Confidence 33567788888888 79999887753 3599999999854433 2334444556655 59999999999987653
Q ss_pred hhHHhcccccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhh----CCCceeEEEEcCCccchh
Q 004368 561 RQWYENGKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM----RPDLFKAAVAAVPFVDVL 633 (758)
Q Consensus 561 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~----~p~~f~a~v~~~~~~d~~ 633 (758)
. +..++|..++++|+.++ ..+|++||+|+|.|+||+++++++.. ......+.++..|.+|..
T Consensus 126 ~-----------p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~~~~~ 194 (311)
T d1jjia_ 126 F-----------PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFV 194 (311)
T ss_dssp T-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSS
T ss_pred c-----------chhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecceeeec
Confidence 2 34568999999998775 36899999999999999988776643 234678889999988854
Q ss_pred hccC-----CCCCCCChhhh----hccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHH
Q 004368 634 TTML-----DPTIPLTTAEW----EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLR 704 (758)
Q Consensus 634 ~~~~-----~~~~~~~~~~~----~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~ 704 (758)
.... ........... ..+..+..... .-...||+....+ ..||+||+||++|..+ .++.+|+++|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sp~~~~~~-~~pP~li~~g~~D~l~--d~~~~~~~~L~ 269 (311)
T d1jjia_ 195 APTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDK--FNPLASVIFADLE-NLPPALIITAEYDPLR--DEGEVFGQMLR 269 (311)
T ss_dssp SCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGG--GCTTTSGGGSCCT-TCCCEEEEEEEECTTH--HHHHHHHHHHH
T ss_pred cCcccccccccccccccHHHhhhhhhhcccccccc--cccccchhhcccc-cCCCEEEEEcCCCCCh--HHHHHHHHHHH
Confidence 3110 00011110000 00001100000 0012467665443 5677999999999765 49999999999
Q ss_pred hcCCCCceEEEEecCCCCCCCC--C-ChHHHHHHHHHHHHHHH
Q 004368 705 EMKTDDNILLFKCELGAGHFSK--S-GRFERLREAAFTYTFLM 744 (758)
Q Consensus 705 ~~~~~~~~~~~~~~~~~gH~~~--~-~~~~~~~~~~~~~~fl~ 744 (758)
++|++++++.|+ +.+|++. . ...+..+...++.+||.
T Consensus 270 ~~Gv~v~~~~~~---g~~H~F~~~~~~~~~a~~a~~~i~~fl~ 309 (311)
T d1jjia_ 270 RAGVEASIVRYR---GVLHGFINYYPVLKAARDAINQIAALLV 309 (311)
T ss_dssp HTTCCEEEEEEE---EEETTGGGGTTTCHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEEEC---CCCCccccCCCcCHHHHHHHHHHHHHhC
Confidence 999999999998 8899753 1 12233333444566763
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=1.3e-18 Score=173.28 Aligned_cols=210 Identities=17% Similarity=0.040 Sum_probs=135.3
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcC----hHhHHHHHHHHHHHc
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN----TFTDFIACAEYLIKN 589 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~----~~~D~~~~~~~l~~~ 589 (758)
++.|+||++||..+... .|......|+++||+|+.+|+||+|+....+........... ...++.++..++...
T Consensus 22 ~~~~~vl~lHG~~~~~~--~~~~~~~~la~~G~~V~~~D~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (238)
T d1ufoa_ 22 APKALLLALHGLQGSKE--HILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEA 99 (238)
T ss_dssp SCCEEEEEECCTTCCHH--HHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHH--HHHHHHHHHHHCCCEEEEecCCCCCCCcccccccccchhhhhhhhhHHhHHHHHHHHhhhc
Confidence 45799999999655432 234445678889999999999999876432221110000001 112222333344445
Q ss_pred CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcc
Q 004368 590 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 669 (758)
Q Consensus 590 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~ 669 (758)
+.+++++++++|+|+||++++.++.++|+...++ +..+..+.... .+...+..+... .+...++.
T Consensus 100 ~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~~~~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~~~ 164 (238)
T d1ufoa_ 100 ERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVL-AFIGSGFPMKL-------------PQGQVVEDPGVL-ALYQAPPA 164 (238)
T ss_dssp HHHHCCCEEEEEETHHHHHHHHHHHTTCCCSCEE-EESCCSSCCCC-------------CTTCCCCCHHHH-HHHHSCGG
T ss_pred cccCCceEEEEEecccHHHHHHHHhcCcchhhee-eeeeecccccc-------------cccccccccccc-chhhhhhh
Confidence 5678899999999999999999999988755444 44433322111 112222333333 33456777
Q ss_pred cccCCC-CCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 004368 670 DNVKAQ-NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 748 (758)
Q Consensus 670 ~~i~~~-~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 748 (758)
.+..+. +.| +||+||++|..||++++.+++++|++.+.+....++ ..+++||... .+.++ ...+||.++|.
T Consensus 165 ~~~~~~~~~P-~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~-~~~g~gH~~~---~~~~~---~~~~f~~~~l~ 236 (238)
T d1ufoa_ 165 TRGEAYGGVP-LLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARF-VEEGAGHTLT---PLMAR---VGLAFLEHWLE 236 (238)
T ss_dssp GCGGGGTTCC-EEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEE-EETTCCSSCC---HHHHH---HHHHHHHHHHH
T ss_pred hhhhhhcCCC-eEEEEcCCCCccCHHHHHHHHHHHHhcCCCceEEEE-EECCCCCccC---HHHHH---HHHHHHHHHhc
Confidence 666655 566 999999999999999999999999999877544333 3358999753 23333 35689998874
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.77 E-value=8.2e-18 Score=180.15 Aligned_cols=150 Identities=19% Similarity=0.233 Sum_probs=120.2
Q ss_pred CCCceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecC--CCccC--CCC------CCChHHHHHHHcCcEEEE
Q 004368 481 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYG--SYEIC--NDP------AFNSSRLSLLDRGFIFAI 550 (758)
Q Consensus 481 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hG--g~~~~--~~~------~~~~~~~~l~~~G~~v~~ 550 (758)
...++.+.+.++.+||++|.+.|+.|++. ++.|+||..|+ ..+.. ... .+......|+++||+|+.
T Consensus 23 ~~~~~~~~v~ipmrDG~~L~~~v~~P~~~----~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~ 98 (385)
T d2b9va2 23 QRDYIKREVMVPMRDGVKLYTVIVIPKNA----RNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVF 98 (385)
T ss_dssp CCSEEEEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEE
T ss_pred CCCCeEeEEEEECCCCCEEEEEEEEcCCC----CceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEE
Confidence 34577889999999999999999999764 68999998653 11111 111 123345789999999999
Q ss_pred EecCCCCCCchhHHhccc-----ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEE
Q 004368 551 AQIRGGGELGRQWYENGK-----FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 625 (758)
Q Consensus 551 ~~~RG~g~~G~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 625 (758)
+|+||.|+++..|...+. ......+.+|+.++++||.++...+.+||+++|+|+||+++++++++.|+.++|++.
T Consensus 99 ~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~ 178 (385)
T d2b9va2 99 QDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAP 178 (385)
T ss_dssp EECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEE
T ss_pred EcCCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEE
Confidence 999999999988765432 234456789999999999999877889999999999999999999999999999999
Q ss_pred cCCccchhh
Q 004368 626 AVPFVDVLT 634 (758)
Q Consensus 626 ~~~~~d~~~ 634 (758)
.+++.|+..
T Consensus 179 ~~~~~d~~~ 187 (385)
T d2b9va2 179 ESPMVDGWM 187 (385)
T ss_dssp EEECCCTTT
T ss_pred ecccccccc
Confidence 998887543
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.77 E-value=7.9e-18 Score=163.73 Aligned_cols=207 Identities=14% Similarity=0.057 Sum_probs=145.5
Q ss_pred eEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecC--CCccCCCCC-CChHHHHHHHcCcEEEEEecCCCCCCchh
Q 004368 486 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYG--SYEICNDPA-FNSSRLSLLDRGFIFAIAQIRGGGELGRQ 562 (758)
Q Consensus 486 ~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hG--g~~~~~~~~-~~~~~~~l~~~G~~v~~~~~RG~g~~G~~ 562 (758)
.+.+++...+| +|.+.+..|... ...+.+++|++|+ ++|.++... ....+..|+++||.|+.+|+||.|++...
T Consensus 8 ~~~l~i~gp~G-~l~~~~~~p~~~--~~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G~S~g~ 84 (218)
T d2fuka1 8 SAALTLDGPVG-PLDVAVDLPEPD--VAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS 84 (218)
T ss_dssp CEEEEEEETTE-EEEEEEECCCTT--SCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSC
T ss_pred ceEEEEeCCCc-cEEEEEEcCCCC--CCCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCccCCCc
Confidence 36678888888 588887777543 2234566677774 344333221 22345688999999999999999887654
Q ss_pred HHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCC
Q 004368 563 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 642 (758)
Q Consensus 563 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~ 642 (758)
+. ......+|+.++++|+.++. +.++++++|+|+||.+++.++.+. ..+++|+.+|..+...+
T Consensus 85 ~~------~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~~~------- 147 (218)
T d2fuka1 85 FD------HGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWDF------- 147 (218)
T ss_dssp CC------TTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBCC-------
T ss_pred cC------cCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccchhh-------
Confidence 32 23455789999999998874 458999999999999998877763 25688888886542111
Q ss_pred CChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCC
Q 004368 643 LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 722 (758)
Q Consensus 643 ~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g 722 (758)
++ .+..+| +||+||++|+.||+.++.++++++. .+.++++++ +++
T Consensus 148 ------------------------~~----~~~~~P-~Lvi~G~~D~~vp~~~~~~l~~~~~---~~~~l~~i~---ga~ 192 (218)
T d2fuka1 148 ------------------------SD----VQPPAQ-WLVIQGDADEIVDPQAVYDWLETLE---QQPTLVRMP---DTS 192 (218)
T ss_dssp ------------------------TT----CCCCSS-EEEEEETTCSSSCHHHHHHHHTTCS---SCCEEEEET---TCC
T ss_pred ------------------------hc----cccccc-eeeEecCCCcCcCHHHHHHHHHHcc---CCceEEEeC---CCC
Confidence 00 012356 9999999999999999998876654 345677776 999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCC
Q 004368 723 HFSKSGRFERLREAAFTYTFLMRALSML 750 (758)
Q Consensus 723 H~~~~~~~~~~~~~~~~~~fl~~~l~~~ 750 (758)
|++.... ..+.+. +.+|+.++|.-+
T Consensus 193 H~f~~~~-~~l~~~--~~~~v~~~l~~~ 217 (218)
T d2fuka1 193 HFFHRKL-IDLRGA--LQHGVRRWLPAT 217 (218)
T ss_dssp TTCTTCH-HHHHHH--HHHHHGGGCSSC
T ss_pred CCCCCCH-HHHHHH--HHHHHHHhcCCC
Confidence 9876443 334443 568999988654
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=5.1e-18 Score=174.36 Aligned_cols=255 Identities=15% Similarity=0.038 Sum_probs=167.7
Q ss_pred CCCceeEEEEeeCC-CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCCh---HHHHHHHcCcEEEEEecCCC
Q 004368 481 TNNYFTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---SRLSLLDRGFIFAIAQIRGG 556 (758)
Q Consensus 481 ~~~~~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~~~RG~ 556 (758)
...+.++.+++.|. .|.+|++.|..| .+++|+|++.||+.+......|.. ....+.+.|+++++++..+.
T Consensus 4 ~~~~~v~~~~~~s~~~~r~~~~~v~~p------~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 77 (288)
T d1sfra_ 4 RPGLPVEYLQVPSPSMGRDIKVQFQSG------GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQS 77 (288)
T ss_dssp STTCCCEEEEEEETTTTEEEEEEEECC------STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTT
T ss_pred CCCCEEEEEEEECCCCCcEEEEEEeCC------CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCC
Confidence 34555667777654 688898876533 357999999999654333222211 23456668999999998877
Q ss_pred CCCchhHHhcc-cccCCcChHhH--HHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchh
Q 004368 557 GELGRQWYENG-KFLKKKNTFTD--FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVL 633 (758)
Q Consensus 557 g~~G~~~~~~~-~~~~~~~~~~D--~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~ 633 (758)
+.++..+.... ....+...+++ +.+.+.+|.++..+|++|++|+|+|+||++++.++.++|++|+++++.+|.+|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~ 157 (288)
T d1sfra_ 78 SFYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPS 157 (288)
T ss_dssp CTTCBCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTT
T ss_pred CCCccccCcccccccccchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCccccc
Confidence 65544322211 11111222333 3446788888888999999999999999999999999999999999999998754
Q ss_pred hccCCCCCC------CChhhhhccCCCCCHHHHHHHHhcCcccccCCC--CCCeEEEeccCCCCCCCC------------
Q 004368 634 TTMLDPTIP------LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ--NYPHILVTAGLNDPRVMY------------ 693 (758)
Q Consensus 634 ~~~~~~~~~------~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~--~~P~~Li~~G~~D~~V~~------------ 693 (758)
......... ........+|.+..+ .+..++|+.++.+. +.+++++.+|..|..++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~ 233 (288)
T d1sfra_ 158 QAMGPTLIGLAMGDAGGYKASDMWGPKEDP----AWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGF 233 (288)
T ss_dssp STTHHHHHHHHHHHTTSCCHHHHHCSTTST----HHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHH
T ss_pred ccccchhhhhhhhhcccccHhhhcCCcchh----hhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccccchhHHH
Confidence 321100000 000000123443332 34578898887654 233599999999988774
Q ss_pred --hHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCC
Q 004368 694 --SEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLP 751 (758)
Q Consensus 694 --~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 751 (758)
.++++|.++|+++|+++....++ .+++|.. ...-+++.+.+.||.+.||..+
T Consensus 234 ~~~~~~~l~~~l~~~g~~~~~~~~~--~~G~H~w----~~w~~~l~~~l~~l~~alg~~~ 287 (288)
T d1sfra_ 234 VRTSNIKFQDAYNAGGGHNGVFDFP--DSGTHSW----EYWGAQLNAMKPDLQRALGATP 287 (288)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEECC--SCCCSSH----HHHHHHHHHTHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEEC--CCCccCh----hHHHHHHHHHHHHHHHhcCCCC
Confidence 57889999999999988766654 2346942 1222334557899999999775
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.70 E-value=9.6e-17 Score=155.35 Aligned_cols=187 Identities=14% Similarity=0.113 Sum_probs=128.3
Q ss_pred CCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccc-cc----CCcChHhHHHHHHHHHH
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGK-FL----KKKNTFTDFIACAEYLI 587 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~-~~----~~~~~~~D~~~~~~~l~ 587 (758)
+++.|+||+.||..+. ...|..... .+..++.|+.++....+..+..|..... .. ......+++...++++.
T Consensus 11 ~~~~P~vi~lHG~g~~--~~~~~~~~~-~l~~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 87 (202)
T d2h1ia1 11 DTSKPVLLLLHGTGGN--ELDLLPLAE-IVDSEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTKELNEFLDEAA 87 (202)
T ss_dssp CTTSCEEEEECCTTCC--TTTTHHHHH-HHHTTSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCC--HHHHHHHHH-HhccCCceeeecccccCCCCccccccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 3568999999995332 233444444 4446888888865433322222211100 00 01123456777788888
Q ss_pred HcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcC
Q 004368 588 KNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYS 667 (758)
Q Consensus 588 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~s 667 (758)
++..+|++||+++|+|+||.++..++.++|+.++++++.+|++....
T Consensus 88 ~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~~--------------------------------- 134 (202)
T d2h1ia1 88 KEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG--------------------------------- 134 (202)
T ss_dssp HHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS---------------------------------
T ss_pred HhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCccc---------------------------------
Confidence 88889999999999999999999999999999999999888643100
Q ss_pred cccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 004368 668 PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 668 p~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 747 (758)
......... +++++||++|++||+.++++++++|++++.+++++.|+ +||... .+. ..++.+||.+.+
T Consensus 135 -~~~~~~~~~-~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~----ggH~~~---~~~---~~~~~~wl~k~f 202 (202)
T d2h1ia1 135 -MQLANLAGK-SVFIAAGTNDPICSSAESEELKVLLENANANVTMHWEN----RGHQLT---MGE---VEKAKEWYDKAF 202 (202)
T ss_dssp -CCCCCCTTC-EEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEEEEES----STTSCC---HHH---HHHHHHHHHHHC
T ss_pred -ccccccccc-hhhcccccCCCccCHHHHHHHHHHHHHCCCCEEEEEEC----CCCcCC---HHH---HHHHHHHHHHhC
Confidence 000111234 49999999999999999999999999999888777774 489753 222 334679998864
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.69 E-value=5.9e-17 Score=162.16 Aligned_cols=227 Identities=14% Similarity=0.039 Sum_probs=141.5
Q ss_pred eeEEEEeeCC-CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhH
Q 004368 485 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 563 (758)
Q Consensus 485 ~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~ 563 (758)
.++++++.|. .|.+++++++.|++. + ++++|+||+.||+....... .......++++|....++.+...++.+..+
T Consensus 14 ~~~~~~~~S~~lg~~~~~~v~~P~~~-~-~~~~Pvvv~lhG~~~~~~~~-~~~~l~~l~~~~~~~~~i~v~~~~~~~~~~ 90 (246)
T d3c8da2 14 PAKEIIWKSERLKNSRRVWIFTTGDV-T-AEERPLAVLLDGEFWAQSMP-VWPVLTSLTHRQQLPPAVYVLIDAIDTTHR 90 (246)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEC-------CCCCEEEESSHHHHHHTSC-CHHHHHHHHHTTSSCSCEEEEECCCSHHHH
T ss_pred CcEEEEEECCCCCCEEEEEEEECCCC-C-CCCCCEEEEeCCcchhccCc-HHHHHHHHHHhCCCCceEEeeccccccccc
Confidence 4577778775 488999999999986 4 46799999999975443332 334456777776542222222222222221
Q ss_pred HhcccccCCcChHhHHH-H-HHHHHHHc--CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCC
Q 004368 564 YENGKFLKKKNTFTDFI-A-CAEYLIKN--CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP 639 (758)
Q Consensus 564 ~~~~~~~~~~~~~~D~~-~-~~~~l~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~ 639 (758)
... ......+.+++ . ++.++.+. ..+|+++++|+|+|+||++++.++.++|++|+++++.+|..++....
T Consensus 91 ~~~---~~~~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg~~~~~~~~--- 164 (246)
T d3c8da2 91 AHE---LPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG--- 164 (246)
T ss_dssp HHH---SSSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTT---
T ss_pred ccc---cCccHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCcccccccCC---
Confidence 111 11111122222 1 22223222 34789999999999999999999999999999999999987654321
Q ss_pred CCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecC
Q 004368 640 TIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCEL 719 (758)
Q Consensus 640 ~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 719 (758)
...... ....++.....+...| +++.+|..|+++ ..++++|+++|+++|.+++++.++
T Consensus 165 -------------~~~~~~----~~~~~~~~~~~~~~~~-~~l~~G~~D~~~-~~~~~~l~~~L~~~g~~~~~~~~~--- 222 (246)
T d3c8da2 165 -------------GQQEGV----LLEKLKAGEVSAEGLR-IVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVD--- 222 (246)
T ss_dssp -------------SSSCCH----HHHHHHTTSSCCCSCE-EEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEES---
T ss_pred -------------ccchHH----HHHHhhhhhhhccCCC-eEEEecCCCcch-hHHHHHHHHHHHHCCCCEEEEEeC---
Confidence 111111 1223455555555665 999999999877 478999999999999988776664
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 004368 720 GAGHFSKSGRFERLREAAFTYTFLMRAL 747 (758)
Q Consensus 720 ~~gH~~~~~~~~~~~~~~~~~~fl~~~l 747 (758)
+ ||.. ...-+.+.+.++||.+.|
T Consensus 223 G-gH~~----~~W~~~l~~~l~~l~~~~ 245 (246)
T d3c8da2 223 G-GHDA----LCWRGGLMQGLIDLWQPL 245 (246)
T ss_dssp C-CSCH----HHHHHHHHHHHHHHHGGG
T ss_pred C-CCCh----HHHHHHHHHHHHHHHHhh
Confidence 4 8942 222334555677776654
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.68 E-value=4e-16 Score=156.89 Aligned_cols=220 Identities=15% Similarity=0.097 Sum_probs=137.0
Q ss_pred ceeEEEEeeC-CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCC-Ch---H-HHHHHHcC----cEEEEEec
Q 004368 484 YFTERKWASA-SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF-NS---S-RLSLLDRG----FIFAIAQI 553 (758)
Q Consensus 484 ~~~~~~~~~s-~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~-~~---~-~~~l~~~G----~~v~~~~~ 553 (758)
..++.+.+.| .+|++++++|+.|+++ .+++++|+|++.||+.+....... .. . ...+...+ +.+...+.
T Consensus 20 g~~~~~~~~S~~~g~~~~~~v~lP~~y-~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (255)
T d1jjfa_ 20 GQVVNISYFSTATNSTRPARVYLPPGY-SKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNT 98 (255)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECTTC-CTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECC
T ss_pred eEEEEEEEEecCCCCEEEEEEEeCCCC-CCCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeeccc
Confidence 3566776765 5799999999999998 788899999999997665433211 11 1 12233332 33333333
Q ss_pred CCCCCCchhHHhcccccCCcChHhHHHHHHHHHHH--cCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccc
Q 004368 554 RGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK--NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 631 (758)
Q Consensus 554 RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~--~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 631 (758)
.........+.. .. .-..+.+.+.++.+ ...+|++++++.|+|+||+++..++.++|++|+++++.+|..+
T Consensus 99 ~~~~~~~~~~~~----~~---~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~~~ 171 (255)
T d1jjfa_ 99 NAAGPGIADGYE----NF---TKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPN 171 (255)
T ss_dssp CCCCTTCSCHHH----HH---HHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTT
T ss_pred cccccccccccc----ch---HHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccCcC
Confidence 222111111110 00 01122223444444 3457899999999999999999999999999999999988654
Q ss_pred hhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCc
Q 004368 632 VLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN 711 (758)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~ 711 (758)
..... ..+.. +...... ..|+++|.||+.|..++ ..++++++|+++|.+++
T Consensus 172 ~~~~~------------~~~~~--------------~~~~~~~-~~~~~~i~~G~~D~~~~--~~~~~~~~L~~~g~~~~ 222 (255)
T d1jjfa_ 172 TYPNE------------RLFPD--------------GGKAARE-KLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHV 222 (255)
T ss_dssp SCCHH------------HHCTT--------------TTHHHHH-HCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCCE
T ss_pred Ccccc------------ccccc--------------HHHHhhc-cCCcceEEeCCCCCCch--HHHHHHHHHHHCCCCEE
Confidence 32110 00000 0001111 23469999999999877 57899999999999988
Q ss_pred eEEEEecCCCCCCCCCChHHHHHHHHHHHHHH--HHhcCCC
Q 004368 712 ILLFKCELGAGHFSKSGRFERLREAAFTYTFL--MRALSML 750 (758)
Q Consensus 712 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl--~~~l~~~ 750 (758)
...++ ++||. ...+++. ..+|| .+..+++
T Consensus 223 ~~~~~---~ggH~-----~~~W~~~--l~~fl~~~~~~~~~ 253 (255)
T d1jjfa_ 223 YWLIQ---GGGHD-----FNVWKPG--LWNFLQMADEAGLT 253 (255)
T ss_dssp EEEET---TCCSS-----HHHHHHH--HHHHHHHHHHHTTT
T ss_pred EEEEC---CCCcC-----HHHHHHH--HHHHHHHHHhcCCc
Confidence 87776 89995 2334443 23344 5555554
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=2.7e-17 Score=166.24 Aligned_cols=192 Identities=13% Similarity=0.046 Sum_probs=124.5
Q ss_pred CCCCEEEEecCCCccCC---CCCCChHHH----HHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHH
Q 004368 514 GSDPLLLYGYGSYEICN---DPAFNSSRL----SLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYL 586 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~---~~~~~~~~~----~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l 586 (758)
++.|+||++|||..... ...|..... .++++||.|+.+|||.+++.. .+..++|+.++++|+
T Consensus 29 ~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~~-----------~~~~~~d~~~~~~~l 97 (263)
T d1vkha_ 29 NTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEIT-----------NPRNLYDAVSNITRL 97 (263)
T ss_dssp TCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcchh-----------hhHHHHhhhhhhhcc
Confidence 56799999999743322 222333222 334679999999999887643 234579999999999
Q ss_pred HHcCCCCCCcEEEEEeChhHHHHHHHHhhCCC-----------------ceeEEEEcCCccchhhccCCCCCCCChhhh-
Q 004368 587 IKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD-----------------LFKAAVAAVPFVDVLTTMLDPTIPLTTAEW- 648 (758)
Q Consensus 587 ~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----------------~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~- 648 (758)
.++. ++++|+++|+|+||.+++.++...++ ..++.+...++.|+...... .+......
T Consensus 98 ~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 173 (263)
T d1vkha_ 98 VKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIE--YPEYDCFTR 173 (263)
T ss_dssp HHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHH--CGGGHHHHH
T ss_pred cccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhh--ccccchhhh
Confidence 8874 67899999999999999988876443 34666666666665432210 11000000
Q ss_pred hccCC-CCC-HHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCC
Q 004368 649 EEWGD-PWK-EEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 649 ~e~g~-p~~-~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
..++. +.. ........ ......+.+...| +|++||++|+.||+.++.+|+++|++.++++++++++ +.+|..
T Consensus 174 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~P-~lii~G~~D~~vp~~~s~~l~~~L~~~g~~~~~~~~~---~~~H~~ 247 (263)
T d1vkha_ 174 LAFPDGIQMYEEEPSRVM-PYVKKALSRFSID-MHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDD---LGLHND 247 (263)
T ss_dssp HHCTTCGGGCCCCHHHHH-HHHHHHHHHHTCE-EEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEEC---CCSGGG
T ss_pred cccccccccccccccccC-ccccccccccCCC-eeeeecCCCcccCHHHHHHHHHHHHHCCCCEEEEEEC---CCCchh
Confidence 11111 100 00000000 0011223333455 9999999999999999999999999999998888886 888953
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.4e-16 Score=161.23 Aligned_cols=210 Identities=12% Similarity=0.082 Sum_probs=143.9
Q ss_pred CceeEEEEeeCCCCe-EEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCch
Q 004368 483 NYFTERKWASASDGT-QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR 561 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~-~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~ 561 (758)
.+..+.+.+.+.||. ++.++|+.|++. .+++++|+|+++||+....... .....+....+|++++++++|+...++.
T Consensus 10 ~~~~~~~~~~s~dg~~~~~~~v~~P~~~-~~~~~yPvi~~lhG~~~~~~~~-~~~~~~~~~~~~~~vV~v~~~~~~~~~~ 87 (265)
T d2gzsa1 10 FYHFSATSFDSVDGTRHYRVWTAVPNTT-APASGYPILYMLDGNAVMDRLD-DELLKQLSEKTPPVIVAVGYQTNLPFDL 87 (265)
T ss_dssp SEEEEEEEEECTTSSCEEEEEEEEESSC-CCTTCEEEEEESSHHHHHHHCC-HHHHHHHTTSCCCEEEEEEESSSSSCCH
T ss_pred cceeEEEEEEcCCCCEEEEEEEEcCCCC-CCCCCceEEEEecCcchhhhHH-HHHHHHHHhcCCCeEEEecCCCCCcCcc
Confidence 345788899999984 799999999998 7888999999999964332211 1112234455799999999999887665
Q ss_pred hHHhcc--------cc----------cCCcChHhHHH--HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCcee
Q 004368 562 QWYENG--------KF----------LKKKNTFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 621 (758)
Q Consensus 562 ~~~~~~--------~~----------~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~ 621 (758)
...... .. ..+...+.++. .++.++.++..+|+++++|+|+|+||++++.++.+ ++.|.
T Consensus 88 ~~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~-~~~f~ 166 (265)
T d2gzsa1 88 NSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFR 166 (265)
T ss_dssp HHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCS
T ss_pred cccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHc-CcccC
Confidence 432110 00 00011222222 24566667777899999999999999999998876 67888
Q ss_pred EEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCC--------CCCCCC
Q 004368 622 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLN--------DPRVMY 693 (758)
Q Consensus 622 a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~--------D~~V~~ 693 (758)
++++.+|..++.. +.. +...+++........| +++.+|.. |.++++
T Consensus 167 ~~~a~s~~~~~~~----------------------~~~---~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~d~~~~~ 220 (265)
T d2gzsa1 167 SYYSASPSLGRGY----------------------DAL---LSRVTAVEPLQFCTKH-LAIMEGSATQGDNRETHAVGVL 220 (265)
T ss_dssp EEEEESGGGSTTH----------------------HHH---HHHHHTSCTTTTTTCE-EEEEECCC-----------CHH
T ss_pred EEEEECCcccccc----------------------hhh---hhccccccccccCCCc-EEEEcCCcccccccccccchhH
Confidence 8888888643211 111 2233444444444454 88888866 778899
Q ss_pred hHHHHHHHHHHhcCCCCceEEEEecCCCCCC
Q 004368 694 SEPAKFVAKLREMKTDDNILLFKCELGAGHF 724 (758)
Q Consensus 694 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~ 724 (758)
.++++++++|+++|+++++..|+ +++|+
T Consensus 221 ~~~~~l~~~L~~~g~~~~~~~~p---G~~Hg 248 (265)
T d2gzsa1 221 SKIHTTLTILKDKGVNAVFWDFP---NLGHG 248 (265)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECT---TCCHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEcC---CCCcc
Confidence 99999999999999998877776 99995
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.65 E-value=6.7e-15 Score=143.89 Aligned_cols=211 Identities=15% Similarity=0.092 Sum_probs=149.6
Q ss_pred EEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCC--ccCCCCC-CChHHHHHHHcCcEEEEEecCCCCCCchhHH
Q 004368 488 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSY--EICNDPA-FNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 564 (758)
Q Consensus 488 ~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~--~~~~~~~-~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~ 564 (758)
++++...+| +|.+++ .|... ++.|++|++||.+ |.++... ....+..|.++||.++.+|+||-|.....|
T Consensus 2 ev~i~g~~G-~Le~~~-~~~~~----~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~G~~- 74 (218)
T d2i3da1 2 EVIFNGPAG-RLEGRY-QPSKE----KSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGEF- 74 (218)
T ss_dssp EEEEEETTE-EEEEEE-ECCSS----TTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSCC-
T ss_pred cEEEeCCCc-cEEEEE-eCCCC----CCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCcccc-
Confidence 467888898 799975 44322 4579999999854 3333221 123445788899999999999998775443
Q ss_pred hcccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCC
Q 004368 565 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLT 644 (758)
Q Consensus 565 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~ 644 (758)
.......+|..++++|+..+... ..++.+.|+|+||.++..++.+.+. ..++++..|.......
T Consensus 75 -----~~~~~e~~d~~aa~~~~~~~~~~-~~~~~~~g~S~G~~~a~~~a~~~~~-~~~~~~~~~~~~~~~~--------- 138 (218)
T d2i3da1 75 -----DHGAGELSDAASALDWVQSLHPD-SKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYDF--------- 138 (218)
T ss_dssp -----CSSHHHHHHHHHHHHHHHHHCTT-CCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSCC---------
T ss_pred -----ccchhHHHHHHHHHhhhhccccc-ccceeEEeeehHHHHHHHHHHhhcc-ccceeeccccccccch---------
Confidence 34556779999999999988754 3578999999999999999888764 4555555554221100
Q ss_pred hhhhhccCCCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcC-CCCceEEEEecCCCCC
Q 004368 645 TAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMK-TDDNILLFKCELGAGH 723 (758)
Q Consensus 645 ~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~gH 723 (758)
..+.....| +|++||..|..++..+..+++++++... ...++++++ +++|
T Consensus 139 -------------------------~~~~~~~~p-~l~i~g~~D~~~~~~~~~~l~~~~~~~~~~~~~~~vi~---gAdH 189 (218)
T d2i3da1 139 -------------------------SFLAPCPSS-GLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLP---GANH 189 (218)
T ss_dssp -------------------------TTCTTCCSC-EEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEET---TCCT
T ss_pred -------------------------hhccccCCC-ceeeecccceecChHHHHHHHHHHhhccCCCccEEEeC---CCCC
Confidence 011222456 9999999999999999999999998753 444556665 9999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 004368 724 FSKSGRFERLREAAFTYTFLMRALSMLPSV 753 (758)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 753 (758)
++.. ....+.+. +.+||.++|.....|
T Consensus 190 fF~g-~~~~l~~~--v~~~l~~~l~~~~~p 216 (218)
T d2i3da1 190 FFNG-KVDELMGE--CEDYLDRRLNGELVP 216 (218)
T ss_dssp TCTT-CHHHHHHH--HHHHHHHHHTTCSSC
T ss_pred CCcC-CHHHHHHH--HHHHHHHhcCCCCCC
Confidence 8764 33444443 679999999776553
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.3e-16 Score=153.93 Aligned_cols=192 Identities=14% Similarity=0.136 Sum_probs=120.6
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCC------CCCCchhHHhcccccC-CcChHhHHH------
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRG------GGELGRQWYENGKFLK-KKNTFTDFI------ 580 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG------~g~~G~~~~~~~~~~~-~~~~~~D~~------ 580 (758)
+..++||+.||. |.. ...|......+...|+.+++++.+. .+..+..|+....... ......++.
T Consensus 19 ~~~~~VI~lHG~-G~~-~~~~~~~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~~~~~l 96 (229)
T d1fj2a_ 19 KATAAVIFLHGL-GDT-GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAENI 96 (229)
T ss_dssp CCSEEEEEECCS-SSC-HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHHHHHHH
T ss_pred CCCCEEEEEcCC-CCC-HHHHHHHHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHHHHHHH
Confidence 346799999993 322 1223333334455689999887532 1223445553221111 111222222
Q ss_pred -HHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHH
Q 004368 581 -ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEF 659 (758)
Q Consensus 581 -~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~ 659 (758)
..++.+.+. .+|++||+++|+|+||.+++.++.++|+.|+++|+.++.+-......+
T Consensus 97 ~~li~~~~~~-~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~~~~--------------------- 154 (229)
T d1fj2a_ 97 KALIDQEVKN-GIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFPQ--------------------- 154 (229)
T ss_dssp HHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGSCS---------------------
T ss_pred HHHhhhhhhc-CCCccceeeeecccchHHHHHHHHhhccccCccccccccccccccccc---------------------
Confidence 233333344 479999999999999999999999999999999999886432211100
Q ss_pred HHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcC--CCCceEEEEecCCCCCCCCCChHHHHHHHH
Q 004368 660 YFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMK--TDDNILLFKCELGAGHFSKSGRFERLREAA 737 (758)
Q Consensus 660 ~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~--~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 737 (758)
++.... ..+.| +|++||.+|++||+.+++++++.|++.. .++++..| ++.||... . + +..
T Consensus 155 -------~~~~~~-~~~~P-vli~hG~~D~~vp~~~~~~~~~~L~~~~~~~~v~~~~~---~g~gH~i~--~-~---~~~ 216 (229)
T d1fj2a_ 155 -------GPIGGA-NRDIS-ILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTY---EGMMHSSC--Q-Q---EMM 216 (229)
T ss_dssp -------SCCCST-TTTCC-EEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEE---TTCCSSCC--H-H---HHH
T ss_pred -------cccccc-cccCc-eeEEEcCCCCeeCHHHHHHHHHHHHhcCCCCceEEEEe---CCCCCccC--H-H---HHH
Confidence 011111 12456 9999999999999999999999999853 34444444 48899653 2 2 334
Q ss_pred HHHHHHHHhc
Q 004368 738 FTYTFLMRAL 747 (758)
Q Consensus 738 ~~~~fl~~~l 747 (758)
++.+||.++|
T Consensus 217 ~~~~wL~~~L 226 (229)
T d1fj2a_ 217 DVKQFIDKLL 226 (229)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhHC
Confidence 4678999998
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=2.8e-13 Score=136.34 Aligned_cols=205 Identities=9% Similarity=0.022 Sum_probs=143.2
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+.+|+|||||++|||+....+. ..+++++..++.....+ ..+....+.||||| ++++....... ..+.......
T Consensus 41 ~~sP~wSPDGk~IAf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~--~~~~~~~~~~ 116 (269)
T d2hqsa1 41 LMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGS--LNLYVMDLAS 116 (269)
T ss_dssp EEEEEECTTSSEEEEEECTTSS--CEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSS--CEEEEEETTT
T ss_pred eeeeEECCCCCEEEEEEeeccC--cceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCc--cceeeccccc
Confidence 4589999999999999987764 67999999998877653 33345668999999 88887654322 2333333332
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEEEEcC
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRS 349 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~ 349 (758)
. ....... .........++++++.+++.+...+..+|++.+++++. ...++..... ....|+|+|+.+++.++.
T Consensus 117 ~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 191 (269)
T d2hqsa1 117 G--QIRQVTD--GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSN 191 (269)
T ss_dssp C--CEEECCC--CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred c--cceeeee--ccccccccccccccccceecccccCCceEeeeeccccc-ceeeecccccccccccccccceeEEEeec
Confidence 2 1222221 22223356789999999998887778899999998876 5555443222 234599999999999887
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCC
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
. ....++.++..+. .. .++..........+++++++|++....++...|++++++ |+
T Consensus 192 ~--~~~~i~~~~~~~~-~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d--g~ 248 (269)
T d2hqsa1 192 G--GQQHIAKQDLATG-GV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD--GR 248 (269)
T ss_dssp S--SCEEEEEEETTTC-CE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT--SC
T ss_pred C--CceeeeEeecccc-cc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC--CC
Confidence 6 3578888887652 23 333333333445688889999999999999999999887 55
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.61 E-value=1.9e-14 Score=144.93 Aligned_cols=225 Identities=16% Similarity=0.170 Sum_probs=131.5
Q ss_pred EeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccc
Q 004368 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 569 (758)
Q Consensus 490 ~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~ 569 (758)
.+++.||.+|.... . |..|.||++||..+.. ..|...+..|+++||.|+.+|.||+|.+...
T Consensus 2 ~~~t~dG~~l~y~~-----~----G~g~~ivlvHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~------- 63 (274)
T d1a8qa_ 2 ICTTRDGVEIFYKD-----W----GQGRPVVFIHGWPLNG--DAWQDQLKAVVDAGYRGIAHDRRGHGHSTPV------- 63 (274)
T ss_dssp EEECTTSCEEEEEE-----E----CSSSEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred eEECcCCCEEEEEE-----E----CCCCeEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEEeCCCCcccccc-------
Confidence 46789998776431 1 2346788999965443 3466667788999999999999999876431
Q ss_pred cCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHh-hCCCceeEEEEcCCccchhhccCCCCCCCCh---
Q 004368 570 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN-MRPDLFKAAVAAVPFVDVLTTMLDPTIPLTT--- 645 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~--- 645 (758)
....++.++...+..+++.- ..+++.++|+|+||.+++..++ +.|++++++++..+.................
T Consensus 64 -~~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (274)
T d1a8qa_ 64 -WDGYDFDTFADDLNDLLTDL--DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVF 140 (274)
T ss_dssp -SSCCSHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHH
T ss_pred -cccccchhhHHHHHHHHHHh--hhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhhhhccchhhHHHH
Confidence 12234455544444433332 3478999999999998877554 5689999888777543211110000000000
Q ss_pred ---------------hhh-hcc-C--CC---CCHH-------------------HHHHHHhcCcccccCCCCCCeEEEec
Q 004368 646 ---------------AEW-EEW-G--DP---WKEE-------------------FYFYMKSYSPVDNVKAQNYPHILVTA 684 (758)
Q Consensus 646 ---------------~~~-~e~-g--~p---~~~~-------------------~~~~l~~~sp~~~i~~~~~P~~Li~~ 684 (758)
... ..+ . .+ .... ....+...+....++++++| +|+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vlii~ 219 (274)
T d1a8qa_ 141 DALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIP-TLVVH 219 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSC-EEEEE
T ss_pred HHHHhhhhhhhHHHhhhhhhhhhhccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHHHhccce-eeeec
Confidence 000 000 0 01 0000 01111222333456777898 99999
Q ss_pred cCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCC--ChHHHHHHHHHHHHHHH
Q 004368 685 GLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS--GRFERLREAAFTYTFLM 744 (758)
Q Consensus 685 G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~ 744 (758)
|++|..+++....+..+++. ...++++++ ++||.... ...+.+.+. +.+||.
T Consensus 220 G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~---~~gH~~~~~~~~p~~~~~~--i~~FL~ 273 (274)
T d1a8qa_ 220 GDDDQVVPIDATGRKSAQII---PNAELKVYE---GSSHGIAMVPGDKEKFNRD--LLEFLN 273 (274)
T ss_dssp ETTCSSSCGGGTHHHHHHHS---TTCEEEEET---TCCTTTTTSTTHHHHHHHH--HHHHHT
T ss_pred cCCCCCcCHHHHHHHHHHhC---CCCEEEEEC---CCCCcccccccCHHHHHHH--HHHHHC
Confidence 99999999877655544432 234667775 89997542 334444332 567875
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.60 E-value=3.5e-15 Score=145.01 Aligned_cols=170 Identities=17% Similarity=0.120 Sum_probs=117.1
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccc-cC----CcChHhHHHHHHHHHHH
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF-LK----KKNTFTDFIACAEYLIK 588 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~-~~----~~~~~~D~~~~~~~l~~ 588 (758)
++.|+||++||..+.. ..|......|. .++.++.++.+.....+..|...... .. -.....++.+.++.+.+
T Consensus 21 ~~~p~vv~lHG~g~~~--~~~~~l~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 97 (209)
T d3b5ea1 21 ESRECLFLLHGSGVDE--TTLVPLARRIA-PTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEAAK 97 (209)
T ss_dssp SCCCEEEEECCTTBCT--TTTHHHHHHHC-TTSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCH--HHHHHHHHHhc-cCcEEEeeccCcCcccCccccccCCccccchhhHHHHHHHHHHHHHHHHH
Confidence 5689999999965432 33544445554 47888888765333223333211100 00 01224556667778887
Q ss_pred cCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCc
Q 004368 589 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSP 668 (758)
Q Consensus 589 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp 668 (758)
+..+|++||+++|+|+||++++.++.++|++|+++++.+|...... .+
T Consensus 98 ~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~~--------------------------------~~ 145 (209)
T d3b5ea1 98 RHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH--------------------------------VP 145 (209)
T ss_dssp HHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS--------------------------------CC
T ss_pred HhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCcccccc--------------------------------cc
Confidence 7778999999999999999999999999999999999888532100 01
Q ss_pred ccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC
Q 004368 669 VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 669 ~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 726 (758)
..+. .+.| +|++||++|+.|+ ..+.+++++|++.|.+++..+++ + ||...
T Consensus 146 ~~~~--~~~p-~~~~~G~~D~~~~-~~~~~~~~~l~~~G~~v~~~~~~---g-gH~i~ 195 (209)
T d3b5ea1 146 ATDL--AGIR-TLIIAGAADETYG-PFVPALVTLLSRHGAEVDARIIP---S-GHDIG 195 (209)
T ss_dssp CCCC--TTCE-EEEEEETTCTTTG-GGHHHHHHHHHHTTCEEEEEEES---C-CSCCC
T ss_pred cccc--ccch-heeeeccCCCccC-HHHHHHHHHHHHCCCCeEEEEEC---C-CCCCC
Confidence 1111 2355 9999999999987 67889999999999888777774 4 89764
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.60 E-value=3.1e-15 Score=158.44 Aligned_cols=140 Identities=20% Similarity=0.183 Sum_probs=97.2
Q ss_pred CceeEEEEeeCCCCeEEEEEEEe-eccccccCCCCCEEEEecCCCccCCCCCC----ChHHHHHHHcCcEEEEEecCCCC
Q 004368 483 NYFTERKWASASDGTQIPICIVY-RKNLVKLDGSDPLLLYGYGSYEICNDPAF----NSSRLSLLDRGFIFAIAQIRGGG 557 (758)
Q Consensus 483 ~~~~~~~~~~s~dG~~i~~~l~~-p~~~~~~~~~~P~vl~~hGg~~~~~~~~~----~~~~~~l~~~G~~v~~~~~RG~g 557 (758)
+|..|+..+++.||..|.++-+. ++......++.|+||++||..+.+..+.. ...+..|+++||.|+++|.||+|
T Consensus 24 ~y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~~~~~~~~~~sla~~L~~~Gy~V~~~D~rG~G 103 (377)
T d1k8qa_ 24 GYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGNT 103 (377)
T ss_dssp TCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTST
T ss_pred CCCceEEEEEcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccchhHHhhcCccchHHHHHHHCCCEEEEEcCCCCC
Confidence 56678889999999988776442 22221345678999999997665443321 23567889999999999999999
Q ss_pred CCchhHHhcc-ccc-----CCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEE
Q 004368 558 ELGRQWYENG-KFL-----KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAV 624 (758)
Q Consensus 558 ~~G~~~~~~~-~~~-----~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v 624 (758)
.....-.... ... .......|+.++++++.+.-. .+++.++|||+||.+++.++.++|+..+.++
T Consensus 104 ~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~g--~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~ 174 (377)
T d1k8qa_ 104 WARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTG--QDKLHYVGHSQGTTIGFIAFSTNPKLAKRIK 174 (377)
T ss_dssp TSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHC--CSCEEEEEETHHHHHHHHHHHHCHHHHTTEE
T ss_pred CCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHcC--CCCEEEEEecchHHHHHHHHHhhhhhhhhce
Confidence 7643110000 000 001245688899999876532 3789999999999999999999998765444
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.60 E-value=3.4e-14 Score=145.07 Aligned_cols=211 Identities=17% Similarity=0.162 Sum_probs=129.6
Q ss_pred CCCEEEEecCCCccCCCCCCCh-HHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNS-SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
..|.||++||...... .|.. ....|+++||.|+++|.||.|.+..... .....+++|+.+.+..+++. ++
T Consensus 21 ~~p~vvl~HG~~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~-----~~~~~~~~~~~~d~~~ll~~--l~ 91 (297)
T d1q0ra_ 21 ADPALLLVMGGNLSAL--GWPDEFARRLADGGLHVIRYDHRDTGRSTTRDF-----AAHPYGFGELAADAVAVLDG--WG 91 (297)
T ss_dssp TSCEEEEECCTTCCGG--GSCHHHHHHHHTTTCEEEEECCTTSTTSCCCCT-----TTSCCCHHHHHHHHHHHHHH--TT
T ss_pred CCCEEEEECCCCcChh--HHHHHHHHHHHhCCCEEEEEeCCCCcccccccc-----cccccccchhhhhhcccccc--cc
Confidence 4689999999754332 3443 4567888999999999999997753211 11223577776655555544 24
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhc-------c----CCCCCCCChhh---------------
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT-------M----LDPTIPLTTAE--------------- 647 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~-------~----~~~~~~~~~~~--------------- 647 (758)
.+++.++|+|+||.+++.++.++|++++++|+..+....... . .....+.....
T Consensus 92 ~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (297)
T d1q0ra_ 92 VDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLDGLPGPQQPFLDALALMNQPAEGR 171 (297)
T ss_dssp CSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSSCSCCCCHHHHHHHHHHHSCCCSH
T ss_pred ccceeeccccccchhhhhhhcccccceeeeEEEccccccccchhhhHHHhhhhhhhhhhhhhhHHHHHHHHHhccccchh
Confidence 478999999999999999999999999999987664321110 0 00000000000
Q ss_pred ----------h---hccCCCCCHHHHHHHHh-----------------------cCcccccCCCCCCeEEEeccCCCCCC
Q 004368 648 ----------W---EEWGDPWKEEFYFYMKS-----------------------YSPVDNVKAQNYPHILVTAGLNDPRV 691 (758)
Q Consensus 648 ----------~---~e~g~p~~~~~~~~l~~-----------------------~sp~~~i~~~~~P~~Li~~G~~D~~V 691 (758)
+ .....+.+...+..+.. .+....++++++| +|+++|.+|..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vlvi~G~~D~~~ 250 (297)
T d1q0ra_ 172 AAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAELREVTVP-TLVIQAEHDPIA 250 (297)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGGGGGGGGCCSC-EEEEEETTCSSS
T ss_pred hHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhhhhhhhhhhccccchhhhhccCCc-eEEEEeCCCCCC
Confidence 0 00012222222111100 0112334566888 999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 692 MYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 692 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
|+.+++++.+.+. ..++++++ ++||.......+.+.+. +.+||.
T Consensus 251 ~~~~~~~~~~~~p----~~~~~~i~---~~gH~~~~e~p~~~~~~--i~~~l~ 294 (297)
T d1q0ra_ 251 PAPHGKHLAGLIP----TARLAEIP---GMGHALPSSVHGPLAEV--ILAHTR 294 (297)
T ss_dssp CTTHHHHHHHTST----TEEEEEET---TCCSSCCGGGHHHHHHH--HHHHHH
T ss_pred CHHHHHHHHHhCC----CCEEEEEC---CCCCcchhhCHHHHHHH--HHHHHH
Confidence 9999888876653 23566665 89998765555544332 455554
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.58 E-value=3.9e-15 Score=145.77 Aligned_cols=213 Identities=15% Similarity=0.142 Sum_probs=126.0
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 594 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 594 (758)
..+.||++||..+.. ..|...+..|+++||.|+.+|+||+|+....... ........|+..++..+... +.
T Consensus 10 ~~~~vvliHG~~~~~--~~~~~l~~~L~~~G~~v~~~D~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~ 80 (242)
T d1tqha_ 10 GERAVLLLHGFTGNS--ADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVH----TGPDDWWQDVMNGYEFLKNK---GY 80 (242)
T ss_dssp SSCEEEEECCTTCCT--HHHHHHHHHHHHTTCEEEECCCTTSSSCHHHHTT----CCHHHHHHHHHHHHHHHHHH---TC
T ss_pred CCCeEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEEeCCCCccccccccc----cchhHHHHHHHHHHhhhhhc---cc
Confidence 346788899965433 3466677889999999999999999976543321 11112234455555555544 34
Q ss_pred CcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCC----------CCCCChh----hhhccCCC--CCHH
Q 004368 595 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP----------TIPLTTA----EWEEWGDP--WKEE 658 (758)
Q Consensus 595 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~----------~~~~~~~----~~~e~g~p--~~~~ 658 (758)
+++.++|+|+||.++..++.++|.....+++.............. ....... ....+... ....
T Consensus 81 ~~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (242)
T d1tqha_ 81 EKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLK 160 (242)
T ss_dssp CCEEEEEETHHHHHHHHHHTTSCCSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTHH
T ss_pred CceEEEEcchHHHHhhhhcccCcccccccccccccccchhHHHHHHHHHHHHHhhhccchhhhHHHHHhhhhhhccchhh
Confidence 789999999999999999999987655554433322211100000 0000000 00011111 1111
Q ss_pred HHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCC-hHHHHHHHH
Q 004368 659 FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG-RFERLREAA 737 (758)
Q Consensus 659 ~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~~ 737 (758)
.. ..........+..+..| +|+++|.+|..|++..+++++++++. ...++++++ ++||....+ ..+.+.+
T Consensus 161 ~~-~~~~~~~~~~~~~~~~p-~lii~g~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~gH~~~~~~~~~~~~~-- 231 (242)
T d1tqha_ 161 AL-QELIADVRDHLDLIYAP-TFVVQARHDEMINPDSANIIYNEIES--PVKQIKWYE---QSGHVITLDQEKDQLHE-- 231 (242)
T ss_dssp HH-HHHHHHHHHTGGGCCSC-EEEEEETTCSSSCTTHHHHHHHHCCC--SSEEEEEET---TCCSSGGGSTTHHHHHH--
T ss_pred cc-cccccccccccceeccc-cceeecccCCccCHHHHHHHHHHcCC--CCcEEEEEC---CCCCcCccccCHHHHHH--
Confidence 11 11112234455666777 99999999999999999999887743 234567775 999976432 2333333
Q ss_pred HHHHHHHH
Q 004368 738 FTYTFLMR 745 (758)
Q Consensus 738 ~~~~fl~~ 745 (758)
.+.+||.+
T Consensus 232 ~i~~Fl~~ 239 (242)
T d1tqha_ 232 DIYAFLES 239 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 25788864
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=8.8e-16 Score=149.14 Aligned_cols=193 Identities=16% Similarity=0.125 Sum_probs=117.1
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 573 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~ 573 (758)
.+|.+|......|.. +...|.||++||..+....+.....+..|+++||.|+++|+||.|..... ........
T Consensus 13 v~G~~i~y~~~~~~~----~~~~~~vvllHG~~~~~~~w~~~~~~~~la~~gy~via~D~~G~G~S~~~---~~~~~~~~ 85 (208)
T d1imja_ 13 VQGQALFFREALPGS----GQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEA---AAPAPIGE 85 (208)
T ss_dssp ETTEEECEEEEECSS----SCCSCEEEECCCTTCCHHHHHHHTHHHHHHHTTCEEEEECCTTSGGGTTS---CCSSCTTS
T ss_pred ECCEEEEEEEecCCC----CCCCCeEEEECCCCCChhHHhhhHHHHHHHHcCCeEEEeecccccCCCCC---Ccccccch
Confidence 488888665444432 24578899999965543322111234678999999999999998754321 00011111
Q ss_pred Ch-HhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccC
Q 004368 574 NT-FTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWG 652 (758)
Q Consensus 574 ~~-~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g 652 (758)
.. .+++.+.++.+ +.+++.++|+|+||.+++.++.++|++++++|+.+|..- .++
T Consensus 86 ~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~-----------------~~~- 141 (208)
T d1imja_ 86 LAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICT-----------------DKI- 141 (208)
T ss_dssp CCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCG-----------------GGS-
T ss_pred hhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCcccc-----------------ccc-
Confidence 11 12333333332 347889999999999999999999999999999887421 000
Q ss_pred CCCCHHHHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHH
Q 004368 653 DPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFER 732 (758)
Q Consensus 653 ~p~~~~~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 732 (758)
..+ +..++++| +|+++|++|+.+|.. . +.++. -...++++++ ++||.......+.
T Consensus 142 ---~~~------------~~~~i~~P-~Lii~G~~D~~~~~~--~---~~~~~-~~~~~~~~i~---~~gH~~~~~~p~~ 196 (208)
T d1imja_ 142 ---NAA------------NYASVKTP-ALIVYGDQDPMGQTS--F---EHLKQ-LPNHRVLIMK---GAGHPCYLDKPEE 196 (208)
T ss_dssp ---CHH------------HHHTCCSC-EEEEEETTCHHHHHH--H---HHHTT-SSSEEEEEET---TCCTTHHHHCHHH
T ss_pred ---ccc------------cccccccc-cccccCCcCcCCcHH--H---HHHHh-CCCCeEEEEC---CCCCchhhhCHHH
Confidence 111 12345677 999999999877632 2 22322 2334555665 9999642223333
Q ss_pred HHHHHHHHHHHH
Q 004368 733 LREAAFTYTFLM 744 (758)
Q Consensus 733 ~~~~~~~~~fl~ 744 (758)
+.+. +.+||.
T Consensus 197 ~~~~--l~~Fl~ 206 (208)
T d1imja_ 197 WHTG--LLDFLQ 206 (208)
T ss_dssp HHHH--HHHHHH
T ss_pred HHHH--HHHHHh
Confidence 3332 466765
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.55 E-value=1.3e-14 Score=147.89 Aligned_cols=226 Identities=14% Similarity=0.119 Sum_probs=144.8
Q ss_pred ceeEEEEeeCC-CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCC---hHHHHHHHcCcEEEEEecCCCCCC
Q 004368 484 YFTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN---SSRLSLLDRGFIFAIAQIRGGGEL 559 (758)
Q Consensus 484 ~~~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~---~~~~~l~~~G~~v~~~~~RG~g~~ 559 (758)
+.++.++++|. -|..|++.+ + .++.|+|++.||..+......|. ...+.+.++|++|++|+...+ .+
T Consensus 4 ~~v~~~~~~s~~~~r~i~~~~--~------~~~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~~-~~ 74 (280)
T d1dqza_ 4 LPVEYLQVPSASMGRDIKVQF--Q------GGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQS-SF 74 (280)
T ss_dssp SCEEEEEEEETTTTEEEEEEE--E------CCSSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTT-CT
T ss_pred cEEEEEEEecccCCCcceEEe--e------CCCCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCCC-Cc
Confidence 45677777654 578888875 2 14579999999965543322222 133567778999999995332 33
Q ss_pred chhHHhcccc--cCCcChHhHH--HHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhc
Q 004368 560 GRQWYENGKF--LKKKNTFTDF--IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 635 (758)
Q Consensus 560 G~~~~~~~~~--~~~~~~~~D~--~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~ 635 (758)
...|+..... ..+...++++ .+.+.+|.++..+|++|++|+|+||||++++.++.++|++|+|+++.+|.++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~~~ 154 (280)
T d1dqza_ 75 YTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSES 154 (280)
T ss_dssp TSBCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTST
T ss_pred CccccCCcccccCCcchhHHHHHHHHHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCcccC
Confidence 3445433322 2223344443 33667777777899999999999999999999999999999999999998874321
Q ss_pred cCCCCCC------CChhhhhccCCCCCHHHHHHHHhcCcccccCCC--CCCeEEEeccCCCCCCCC--------------
Q 004368 636 MLDPTIP------LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ--NYPHILVTAGLNDPRVMY-------------- 693 (758)
Q Consensus 636 ~~~~~~~------~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~~~--~~P~~Li~~G~~D~~V~~-------------- 693 (758)
....... .....-.-+|.+.++ .+.+++|+.++++. +-+++++.+|..|...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~e~~~~ 230 (280)
T d1dqza_ 155 WWPTLIGLAMNDSGGYNANSMWGPSSDP----AWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTL 230 (280)
T ss_dssp THHHHHHHHHHHTTSCCHHHHHCSTTSH----HHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHH
T ss_pred cchhhhhhhHhhccCCCHhhccCCcchh----hhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccccccccccchhhHHHH
Confidence 1000000 000000123444443 24568888877765 233599999998876553
Q ss_pred hHHHHHHHHHHhcCCCCceEEEEecCCCCCC
Q 004368 694 SEPAKFVAKLREMKTDDNILLFKCELGAGHF 724 (758)
Q Consensus 694 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~ 724 (758)
.++.++.++|++++.....+.+. .++||.
T Consensus 231 ~~~~~~~~~l~~~g~~~~~~~~~--~~GgH~ 259 (280)
T d1dqza_ 231 RTNQTFRDTYAADGGRNGVFNFP--PNGTHS 259 (280)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECC--SCCCSS
T ss_pred HHHHHHHHHHHHcCCCeEEEEEc--CCCccC
Confidence 45678899999988765444333 367894
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.55 E-value=6.8e-15 Score=149.05 Aligned_cols=123 Identities=20% Similarity=0.128 Sum_probs=84.8
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCC
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 572 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~ 572 (758)
..||.+|.....-. .+..|+||++||+++.+.. |......++++||.|+.+|.||+|.+... ...
T Consensus 8 ~~~g~~i~y~~~g~------~~~~~~iv~lHG~~g~~~~--~~~~~~~~~~~~~~vi~~D~~G~G~S~~~-------~~~ 72 (290)
T d1mtza_ 8 KVNGIYIYYKLCKA------PEEKAKLMTMHGGPGMSHD--YLLSLRDMTKEGITVLFYDQFGCGRSEEP-------DQS 72 (290)
T ss_dssp EETTEEEEEEEECC------SSCSEEEEEECCTTTCCSG--GGGGGGGGGGGTEEEEEECCTTSTTSCCC-------CGG
T ss_pred EECCEEEEEEEcCC------CCCCCeEEEECCCCCchHH--HHHHHHHHHHCCCEEEEEeCCCCcccccc-------ccc
Confidence 45898886442211 1345889999998765432 44555678889999999999999875421 111
Q ss_pred cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccc
Q 004368 573 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 631 (758)
Q Consensus 573 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 631 (758)
..+++++.+.+..++++- ...+++.++|+|+||.++..++.++|++++++|+.+++..
T Consensus 73 ~~~~~~~~~~l~~ll~~l-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 130 (290)
T d1mtza_ 73 KFTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSS 130 (290)
T ss_dssp GCSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSB
T ss_pred cccccchhhhhhhhhccc-ccccccceecccccchhhhhhhhcChhhheeeeecccccC
Confidence 233444444444443321 1236899999999999999999999999999998887643
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.55 E-value=3.2e-14 Score=143.12 Aligned_cols=227 Identities=19% Similarity=0.210 Sum_probs=130.9
Q ss_pred EeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccc
Q 004368 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 569 (758)
Q Consensus 490 ~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~ 569 (758)
++++.||.+|....+-|+ ..|+||++||..+.. ..|......|+++||.|+.+|.||.|.....
T Consensus 2 ~i~~~dG~~l~y~~~G~~-------~~~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~s~~~------- 65 (275)
T d1a88a_ 2 TVTTSDGTNIFYKDWGPR-------DGLPVVFHHGWPLSA--DDWDNQMLFFLSHGYRVIAHDRRGHGRSDQP------- 65 (275)
T ss_dssp EEECTTSCEEEEEEESCT-------TSCEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred EEEecCCCEEEEEEecCC-------CCCeEEEECCCCCCH--HHHHHHHHHHHhCCCEEEEEecccccccccc-------
Confidence 467899998876543222 347789999965543 3466667789999999999999998865431
Q ss_pred cCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeCh-hHHHHHHHHhhCCCceeEEEEcCCccchhhccCC--CCCCCC--
Q 004368 570 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSA-GGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD--PTIPLT-- 644 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~-GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~--~~~~~~-- 644 (758)
....+++++.+.+..+++. .+.+++.++|+|+ ||.++..++.++|++++.+|+..+.......... ...+..
T Consensus 66 -~~~~~~~~~~~~~~~~l~~--l~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 142 (275)
T d1a88a_ 66 -STGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVF 142 (275)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCHHHH
T ss_pred -ccccccccccccccccccc--ccccccccccccccccchhhcccccCcchhhhhhhhcccccccccchhhhhhhhhhhh
Confidence 1123445555544444443 2346788899997 5556666778899999999887754211100000 000000
Q ss_pred -----------hhh--------hhccCC--C-CCHHH----------------H---HHHHhcCcccccCCCCCCeEEEe
Q 004368 645 -----------TAE--------WEEWGD--P-WKEEF----------------Y---FYMKSYSPVDNVKAQNYPHILVT 683 (758)
Q Consensus 645 -----------~~~--------~~e~g~--p-~~~~~----------------~---~~l~~~sp~~~i~~~~~P~~Li~ 683 (758)
... +..+.. . ..... + ..+...+....++++++| +|++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~l~i 221 (275)
T d1a88a_ 143 DEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVP-VLVA 221 (275)
T ss_dssp HHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSC-EEEE
T ss_pred hhhhhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhHHHHhhccc-ccee
Confidence 000 000000 0 01111 0 111112222345556888 9999
Q ss_pred ccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 684 AGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 684 ~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
+|++|..+|+.+..++.+++. .+.+.++++ ++||.......+.+.+ .+.+||.
T Consensus 222 ~G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~---~~gH~~~~e~p~~~~~--~i~~Fl~ 274 (275)
T d1a88a_ 222 HGTDDQVVPYADAAPKSAELL---ANATLKSYE---GLPHGMLSTHPEVLNP--DLLAFVK 274 (275)
T ss_dssp EETTCSSSCSTTTHHHHHHHS---TTEEEEEET---TCCTTHHHHCHHHHHH--HHHHHHH
T ss_pred ecCCCCCcCHHHHHHHHHHhC---CCCEEEEEC---CCCCchHHhCHHHHHH--HHHHHHc
Confidence 999999999887766555442 234566665 8999754333333332 2566764
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.54 E-value=7e-15 Score=142.10 Aligned_cols=182 Identities=17% Similarity=0.124 Sum_probs=117.9
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCC-CchhHHhcccccCCcChHhHHHHHHHHHHH---c
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGE-LGRQWYENGKFLKKKNTFTDFIACAEYLIK---N 589 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~-~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~---~ 589 (758)
+..|+||++||+.+.. ..|......++ .++.|+.++.+..++ ++..+. ....+.....|+...++.+.. .
T Consensus 15 ~~~P~vi~lHG~G~~~--~~~~~~~~~l~-~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (203)
T d2r8ba1 15 AGAPLFVLLHGTGGDE--NQFFDFGARLL-PQATILSPVGDVSEHGAARFFR---RTGEGVYDMVDLERATGKMADFIKA 88 (203)
T ss_dssp TTSCEEEEECCTTCCH--HHHHHHHHHHS-TTSEEEEECCSEEETTEEESSC---BCGGGCBCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCH--HHHHHHHHHhc-cCCeEEEecccccccccccccc---ccCccccchhHHHHHHHHHHHHHHH
Confidence 5689999999954322 12323333333 577788876553322 111111 112222334454444444322 1
Q ss_pred --CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcC
Q 004368 590 --CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYS 667 (758)
Q Consensus 590 --~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~s 667 (758)
..+++++|+++|+|+||.++..++..+|+.+.++++.+|....... .
T Consensus 89 ~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~~----------------~--------------- 137 (203)
T d2r8ba1 89 NREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEPK----------------I--------------- 137 (203)
T ss_dssp HHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCCC----------------C---------------
T ss_pred hhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeeccccccccc----------------c---------------
Confidence 2368899999999999999999999999999999999886431100 0
Q ss_pred cccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 668 PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 668 p~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
....... +++++||++|++||+.++++++++|++.|.+++++.++ .||... .+.+ .++.+||.++
T Consensus 138 ---~~~~~~~-~~~i~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~~~----ggH~~~---~~~~---~~~~~wl~~~ 202 (203)
T d2r8ba1 138 ---SPAKPTR-RVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHP----GGHEIR---SGEI---DAVRGFLAAY 202 (203)
T ss_dssp ---CCCCTTC-EEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEEEEES----SCSSCC---HHHH---HHHHHHHGGG
T ss_pred ---ccccccc-hhhccccCCCCcccHHHHHHHHHHHHHCCCCEEEEEEC----CCCcCC---HHHH---HHHHHHHHhc
Confidence 0011123 59999999999999999999999999999988777774 489753 2223 3356888764
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.54 E-value=4.3e-14 Score=141.57 Aligned_cols=225 Identities=20% Similarity=0.193 Sum_probs=134.4
Q ss_pred EeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccc
Q 004368 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 569 (758)
Q Consensus 490 ~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~ 569 (758)
+|.+.||++|.... . |..|.||++||..+.. ..|......|+++||.|+.+|.||.|.....
T Consensus 2 ~f~~~dG~~l~y~~-----~----G~g~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~------- 63 (271)
T d1va4a_ 2 TFVAKDGTQIYFKD-----W----GSGKPVLFSHGWLLDA--DMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP------- 63 (271)
T ss_dssp EEECTTSCEEEEEE-----E----SSSSEEEEECCTTCCG--GGGHHHHHHHHTTTCEEEEECCTTSTTSCCC-------
T ss_pred EEEeECCeEEEEEE-----E----cCCCeEEEECCCCCCH--HHHHHHHHHHHhCCCEEEEEecccccccccc-------
Confidence 46678998886431 1 2346788999965543 3366667788889999999999999876421
Q ss_pred cCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHH-HHHhhCCCceeEEEEcCCccchhhccCC--CCCCCC--
Q 004368 570 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIG-AVLNMRPDLFKAAVAAVPFVDVLTTMLD--PTIPLT-- 644 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~-~~~~~~p~~f~a~v~~~~~~d~~~~~~~--~~~~~~-- 644 (758)
....+++++...+..+.+. ++.+++.++|+|+||.+++ .++.++|++++++++..+.......... ......
T Consensus 64 -~~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 140 (271)
T d1va4a_ 64 -WTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVF 140 (271)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTSBCHHHH
T ss_pred -ccccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecccccccccchhhhhhhhhhHH
Confidence 2234556666655555544 2457899999999887654 5667789999999988765432111100 000000
Q ss_pred --------------hhhh--hccCC----CCCH-------------------HHHHHHHhcCcccccCCCCCCeEEEecc
Q 004368 645 --------------TAEW--EEWGD----PWKE-------------------EFYFYMKSYSPVDNVKAQNYPHILVTAG 685 (758)
Q Consensus 645 --------------~~~~--~e~g~----p~~~-------------------~~~~~l~~~sp~~~i~~~~~P~~Li~~G 685 (758)
...+ ..++. .... ..+..+...+....+++++.| +|+++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vl~i~g 219 (271)
T d1va4a_ 141 ARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVP-TLVIHG 219 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSC-EEEEEE
T ss_pred HHHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhhhhcccc-eeeccc
Confidence 0000 00010 0000 001111222333345566888 999999
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 686 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 686 ~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
++|..+|+..+.++.+++.. ..++++++ ++||.......+.+.+ .+.+||.
T Consensus 220 ~~D~~~~~~~~~~~~~~~~~---~~~~~~~~---~~gH~~~~e~p~~~~~--~i~~fL~ 270 (271)
T d1va4a_ 220 DGDQIVPFETTGKVAAELIK---GAELKVYK---DAPHGFAVTHAQQLNE--DLLAFLK 270 (271)
T ss_dssp TTCSSSCGGGTHHHHHHHST---TCEEEEET---TCCTTHHHHTHHHHHH--HHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHhCC---CCEEEEEC---CCCCchHHhCHHHHHH--HHHHHHC
Confidence 99999999988888776632 34566775 8999754333333322 2466764
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.54 E-value=4.1e-14 Score=138.30 Aligned_cols=190 Identities=16% Similarity=0.152 Sum_probs=119.6
Q ss_pred CCCEEEEecCCCccCCCCCCChHHHHHHHc--CcEEEEEecC------CCCCCchhHHhcccccC-CcChHhHHHHHH--
Q 004368 515 SDPLLLYGYGSYEICNDPAFNSSRLSLLDR--GFIFAIAQIR------GGGELGRQWYENGKFLK-KKNTFTDFIACA-- 583 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~~~R------G~g~~G~~~~~~~~~~~-~~~~~~D~~~~~-- 583 (758)
+.|+||+.||. |.. ...|......|... ++.+++++-+ +++-.+..|+....... .....+++.+..
T Consensus 13 ~~~~Vi~lHG~-G~~-~~~~~~~~~~l~~~~~~~~~i~p~ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 90 (218)
T d1auoa_ 13 ADACVIWLHGL-GAD-RYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAKM 90 (218)
T ss_dssp CSEEEEEECCT-TCC-TTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHHHH
T ss_pred CCeEEEEEcCC-CCC-hhhHHHHHHHHHHhCCCcEEEccCCCccccccCCCcccCcccccccccccccchHHHHHHHHHH
Confidence 46799999993 322 33455555555544 4566665432 11222345654322211 222333333332
Q ss_pred -HHHH---HcCCCCCCcEEEEEeChhHHHHHHHH-hhCCCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHH
Q 004368 584 -EYLI---KNCYCTKEKLCIEGRSAGGLLIGAVL-NMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEE 658 (758)
Q Consensus 584 -~~l~---~~~~~d~~~i~i~G~S~GG~l~~~~~-~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~ 658 (758)
..++ .+..+|++||+++|+|+||.++..++ .+.+..++++|+.+++...... .. ....
T Consensus 91 v~~li~~~~~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~~----~~-------------~~~~ 153 (218)
T d1auoa_ 91 VTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFGD----EL-------------ELSA 153 (218)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCCT----TC-------------CCCH
T ss_pred HHHHHHHHHHhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCccccc----cc-------------ccch
Confidence 2222 23457999999999999999998765 4556789999998885421110 00 0000
Q ss_pred HHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHH
Q 004368 659 FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAF 738 (758)
Q Consensus 659 ~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~ 738 (758)
. ..+.| +|++||+.|..||+.+++++++.|++.|.+++++.| +.||... .+ +..+
T Consensus 154 ---~-----------~~~~p-vl~~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~----~~gH~i~---~~---~~~~ 208 (218)
T d1auoa_ 154 ---S-----------QQRIP-ALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEY----PMGHEVL---PQ---EIHD 208 (218)
T ss_dssp ---H-----------HHTCC-EEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEE----SCSSSCC---HH---HHHH
T ss_pred ---h-----------ccCCC-EEEEecCCCCccCHHHHHHHHHHHHHCCCCEEEEEE----CCCCccC---HH---HHHH
Confidence 0 01356 999999999999999999999999999988877766 4689653 22 3345
Q ss_pred HHHHHHHhcC
Q 004368 739 TYTFLMRALS 748 (758)
Q Consensus 739 ~~~fl~~~l~ 748 (758)
+.+||.++||
T Consensus 209 i~~wl~~~lg 218 (218)
T d1auoa_ 209 IGAWLAARLG 218 (218)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 7899999987
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.54 E-value=8.8e-14 Score=139.66 Aligned_cols=225 Identities=17% Similarity=0.183 Sum_probs=132.7
Q ss_pred EeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccc
Q 004368 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 569 (758)
Q Consensus 490 ~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~ 569 (758)
++++.||.+|.... . |+.|.||++||..+... .|...+..|+++||.|+.+|.||+|.....
T Consensus 2 ~f~~~dG~~i~y~~-----~----G~g~pvvllHG~~~~~~--~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~------- 63 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKD-----W----GSGQPIVFSHGWPLNAD--SWESQMIFLAAQGYRVIAHDRRGHGRSSQP------- 63 (273)
T ss_dssp EEECTTSCEEEEEE-----E----SCSSEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred EEEeeCCcEEEEEE-----E----CCCCeEEEECCCCCCHH--HHHHHHHHHHhCCCEEEEEechhcCccccc-------
Confidence 46788998875431 1 23466888999655433 366677788899999999999999876431
Q ss_pred cCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHH-HHHhhCCCceeEEEEcCCccchhhccCC-C-CCCCCh-
Q 004368 570 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIG-AVLNMRPDLFKAAVAAVPFVDVLTTMLD-P-TIPLTT- 645 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~-~~~~~~p~~f~a~v~~~~~~d~~~~~~~-~-~~~~~~- 645 (758)
....++.++.+.+..+++. .+.++..++|+|+||.+++ .++.++|++++++++..+.......... . ......
T Consensus 64 -~~~~~~~~~~~~~~~~l~~--l~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 140 (273)
T d1a8sa_ 64 -WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVF 140 (273)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHH
T ss_pred -cccccccchHHHHHHHHHh--cCccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccccccccccchhhhh
Confidence 1223556666655555443 2346788999999886554 4556679999888877654321110000 0 000000
Q ss_pred ---------------hhh---hcc--CCC---CCHH-------------------HHHHHHhcCcccccCCCCCCeEEEe
Q 004368 646 ---------------AEW---EEW--GDP---WKEE-------------------FYFYMKSYSPVDNVKAQNYPHILVT 683 (758)
Q Consensus 646 ---------------~~~---~e~--g~p---~~~~-------------------~~~~l~~~sp~~~i~~~~~P~~Li~ 683 (758)
... ..+ ..+ .... .+..+...+....++++++| +|++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-vlii 219 (273)
T d1a8sa_ 141 DGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVP-TLVV 219 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSC-EEEE
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhHHHHhhccc-eEEE
Confidence 000 000 001 1111 11122233444556677898 9999
Q ss_pred ccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 684 AGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 684 ~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
+|++|..||...+.++.+++.. ..++++++ ++||.......+.+.+ .+.+||.
T Consensus 220 ~g~~D~~~~~~~~~~~~~~~~~---~~~~~~i~---~~gH~~~~e~p~~~~~--~i~~Fl~ 272 (273)
T d1a8sa_ 220 HGDADQVVPIEASGIASAALVK---GSTLKIYS---GAPHGLTDTHKDQLNA--DLLAFIK 272 (273)
T ss_dssp EETTCSSSCSTTTHHHHHHHST---TCEEEEET---TCCSCHHHHTHHHHHH--HHHHHHH
T ss_pred ecCCCCCCCHHHHHHHHHHhCC---CCEEEEEC---CCCCchHHhCHHHHHH--HHHHHcC
Confidence 9999999999888877766532 34566665 9999754333333322 2466764
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1.9e-12 Score=129.98 Aligned_cols=242 Identities=12% Similarity=0.074 Sum_probs=159.4
Q ss_pred CEEEEEEeCCC-CeEEEEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEe
Q 004368 203 KLVAYAEDTKG-DEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLY 279 (758)
Q Consensus 203 ~~lAy~~~~~G-~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~ 279 (758)
++|||+++.+| ...++|||+|.+++..+.++ ......+++||||| +|+|++... ....++.+...++. ...+.
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~--~~~~~~~~~~~~~~--~~~~~ 79 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGA--VRQVA 79 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCC--EEEEE
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeec--cCcceeeeecccCc--eeEEe
Confidence 78999998875 44679999999988877653 33345679999999 899998643 33467888877663 23333
Q ss_pred eecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccc-ceeeEEeecCCEEEEEEcCCCCCCcEEE
Q 004368 280 HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSELL 358 (758)
Q Consensus 280 ~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~~L~ 358 (758)
... .......|||||+.|++.....+...++........ ......... .....++++++.+++.+...+ ...|+
T Consensus 80 ~~~--~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~i~ 154 (269)
T d2hqsa1 80 SFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG--RPQVY 154 (269)
T ss_dssp CCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTS--SCEEE
T ss_pred eee--cccccceecCCCCeeeEeeecCCccceeeccccccc-ceeeeeccccccccccccccccceecccccC--CceEe
Confidence 222 223356799999999998877766776666665544 333332222 223358889999999888763 46799
Q ss_pred EEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcc
Q 004368 359 ACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESV 438 (758)
Q Consensus 359 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~ 438 (758)
..++++. ....+...........++++++.+++....++...+.+++.. +.. ..+. +.. +....+.++
T Consensus 155 ~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~--~~~-------~~~~-~~~-~~~~~p~~S 222 (269)
T d2hqsa1 155 KVNINGG-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA--TGG-------VQVL-SST-FLDETPSLA 222 (269)
T ss_dssp EEETTSS-CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT--TCC-------EEEC-CCS-SSCEEEEEC
T ss_pred eeecccc-cceeeecccccccccccccccceeEEEeecCCceeeeEeecc--ccc-------ceEe-ecC-ccccceEEC
Confidence 9988763 333333333322334455567788888888888888877765 321 1111 111 122235678
Q ss_pred cCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 439 FSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 439 ~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
+|++.|+|... ......+|.+++.++.
T Consensus 223 PDG~~i~f~s~-~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 223 PNGTMVIYSSS-QGMGSVLNLVSTDGRF 249 (269)
T ss_dssp TTSSEEEEEEE-ETTEEEEEEEETTSCC
T ss_pred CCCCEEEEEEc-CCCCcEEEEEECCCCC
Confidence 99999988643 3456689999998776
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=6.8e-14 Score=144.46 Aligned_cols=121 Identities=14% Similarity=0.160 Sum_probs=89.0
Q ss_pred EEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccc
Q 004368 489 KWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGK 568 (758)
Q Consensus 489 ~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~ 568 (758)
-.++..||.+|+... . |..|+||++||.++.. ..|...+..|+++||.|+++|.||.|.....
T Consensus 14 ~~v~~~~g~~i~y~~-----~----G~gp~vlllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~------ 76 (322)
T d1zd3a2 14 GYVTVKPRVRLHFVE-----L----GSGPAVCLCHGFPESW--YSWRYQIPALAQAGYRVLAMDMKGYGESSAP------ 76 (322)
T ss_dssp EEEEEETTEEEEEEE-----E----CCSSEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEEEECTTSTTSCCC------
T ss_pred eEEEECCCCEEEEEE-----E----cCCCeEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEeccccccccccc------
Confidence 345667898876541 1 3358999999965543 3467778899999999999999999865321
Q ss_pred ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 569 FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 569 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
......+++++...+..++++ .+.+++.++|+|+||.++..++.++|++++++|+..+
T Consensus 77 ~~~~~~~~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 134 (322)
T d1zd3a2 77 PEIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 134 (322)
T ss_dssp SCGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred cccccccccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcc
Confidence 111223456777666666554 2457999999999999999999999999999987653
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.53 E-value=3e-14 Score=144.52 Aligned_cols=210 Identities=12% Similarity=0.142 Sum_probs=122.8
Q ss_pred CCCEEEEecCCCccCCCCC-CChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 515 SDPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
..|+||++||.......+. +......++++||.|+.+|.||+|..... ........+..+.+..++++ .+
T Consensus 29 ~G~~ivllHG~~~~~~~~~~~~~~l~~~~~~g~~v~~~D~~G~G~S~~~-------~~~~~~~~~~~~~i~~li~~--l~ 99 (283)
T d2rhwa1 29 NGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAV-------VMDEQRGLVNARAVKGLMDA--LD 99 (283)
T ss_dssp CSSEEEEECCCSTTCCHHHHHTTTHHHHHHTTCEEEEECCTTSTTSCCC-------CCSSCHHHHHHHHHHHHHHH--HT
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHHHHCCCEEEEEeCCCCcccccc-------cccccccchhhhhccccccc--cc
Confidence 3478999999655433221 22234567889999999999999875431 11112222333333333332 13
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCCC-------------Chhhh----hccC-CC-
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPL-------------TTAEW----EEWG-DP- 654 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~-------------~~~~~----~e~g-~p- 654 (758)
.+++.++|+|+||.+++.++.++|+.++++|+..|..-..... ...+. ....+ ..+. ..
T Consensus 100 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (283)
T d2rhwa1 100 IDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMF--APMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 177 (283)
T ss_dssp CCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSS--SCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGG
T ss_pred ccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchh--hhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhcccc
Confidence 4689999999999999999999999999999887642111100 00000 00000 0010 00
Q ss_pred -CCHHH----HHHH-------------------HhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCC
Q 004368 655 -WKEEF----YFYM-------------------KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 710 (758)
Q Consensus 655 -~~~~~----~~~l-------------------~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~ 710 (758)
..++. +..+ ...+....+.++++| +|+++|.+|..+++.++.++++.+. ..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~~~~~----~~ 252 (283)
T d2rhwa1 178 LITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAK-TFITWGRDDRFVPLDHGLKLLWNID----DA 252 (283)
T ss_dssp GCCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSC-EEEEEETTCSSSCTHHHHHHHHHSS----SE
T ss_pred cCcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhCCCC-EEEEEeCCCCCcCHHHHHHHHHhCC----CC
Confidence 11111 0000 111233445567888 9999999999999999988877763 34
Q ss_pred ceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 711 NILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 711 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
++++++ ++||.......+.+.+ .+.+||.+
T Consensus 253 ~~~~i~---~~gH~~~~e~p~~~~~--~i~~FLk~ 282 (283)
T d2rhwa1 253 RLHVFS---KCGHWAQWEHADEFNR--LVIDFLRH 282 (283)
T ss_dssp EEEEES---SCCSCHHHHTHHHHHH--HHHHHHHH
T ss_pred EEEEEC---CCCCchHHhCHHHHHH--HHHHHHhC
Confidence 566675 8999754333333332 25678764
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.53 E-value=1.3e-13 Score=139.12 Aligned_cols=219 Identities=16% Similarity=0.153 Sum_probs=138.8
Q ss_pred eEEEEeeCC-CCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCC---ChHHHHHHHcCcEEEEEecCCCCCCch
Q 004368 486 TERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF---NSSRLSLLDRGFIFAIAQIRGGGELGR 561 (758)
Q Consensus 486 ~~~~~~~s~-dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~---~~~~~~l~~~G~~v~~~~~RG~g~~G~ 561 (758)
+|+++++|. .|..||+.+.. +..|+|++.||..+......| ....+...++|++|+++|. |.+.+..
T Consensus 4 ~e~~~v~s~~~~r~~~~~v~~--------~~~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g-~~~~~y~ 74 (267)
T d1r88a_ 4 YENLMVPSPSMGRDIPVAFLA--------GGPHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAG-GAYSMYT 74 (267)
T ss_dssp CEEEEEEETTTTEEEEEEEEC--------CSSSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECC-CTTSTTS
T ss_pred eEEEEEecccCCceeeEEEEC--------CCCCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECC-CCCcCCc
Confidence 467777765 57789987532 224999999995443222112 1233566678999999984 2223333
Q ss_pred hHHhcccccCCcChHhHHHH--HHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCC
Q 004368 562 QWYENGKFLKKKNTFTDFIA--CAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP 639 (758)
Q Consensus 562 ~~~~~~~~~~~~~~~~D~~~--~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~ 639 (758)
+|... +...+++++. .+.++.++..+|++|++|+|.||||++++.++.++||+|+++++.+|.+++.......
T Consensus 75 ~~~~~-----~~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~~~~~~~ 149 (267)
T d1r88a_ 75 NWEQD-----GSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNG 149 (267)
T ss_dssp BCSSC-----TTCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHH
T ss_pred ccccc-----ccccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCCCccchh
Confidence 44322 2233555555 6778888888999999999999999999999999999999999999987753321000
Q ss_pred CCCCChh------hhhccCCCCCHHHHHHHHhcCcccccCCC--CCCeEEEeccCCCCCCCC-----------hHHHHHH
Q 004368 640 TIPLTTA------EWEEWGDPWKEEFYFYMKSYSPVDNVKAQ--NYPHILVTAGLNDPRVMY-----------SEPAKFV 700 (758)
Q Consensus 640 ~~~~~~~------~~~e~g~p~~~~~~~~l~~~sp~~~i~~~--~~P~~Li~~G~~D~~V~~-----------~~~~~~~ 700 (758)
....... ....||.+..+ .+.+.+|+.++++. ..+.+++.+|.+|..+.. ..++++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
T d1r88a_ 150 AIAAGMQQFGGVDTNGMWGAPQLG----RWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFY 225 (267)
T ss_dssp HHHHHHHHHHCCCTHHHHCCGGGS----TTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHH
T ss_pred hhhhHHhhhcCCcHhhccCCcchH----hHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhhhHHHHH
Confidence 0000000 00123443221 23467888777654 344599999999977654 3466788
Q ss_pred HHHHhcCCCCceEEEEecCCCCCC
Q 004368 701 AKLREMKTDDNILLFKCELGAGHF 724 (758)
Q Consensus 701 ~~L~~~~~~~~~~~~~~~~~~gH~ 724 (758)
++|++.+... +.+...+++||.
T Consensus 226 ~~l~~~~g~~--~~~~~~~~G~H~ 247 (267)
T d1r88a_ 226 NQYRSVGGHN--GHFDFPASGDNG 247 (267)
T ss_dssp HHHHHTTCCS--EEEECCSSCCSS
T ss_pred HHHHHcCCCc--EEEEEcCCCeEC
Confidence 8888876433 334434578894
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.53 E-value=1.2e-13 Score=131.01 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=105.0
Q ss_pred EEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcE
Q 004368 518 LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKL 597 (758)
Q Consensus 518 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i 597 (758)
.||++||..+......|......|+++||.|+.+|++|+|.. .++|.+..++.+.. ...+++
T Consensus 3 ~V~~vHG~~~~~~~~~~~~l~~~L~~~G~~v~~~d~p~~~~~---------------~~~~~~~~l~~~~~---~~~~~~ 64 (186)
T d1uxoa_ 3 QVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQP---------------RLEDWLDTLSLYQH---TLHENT 64 (186)
T ss_dssp EEEEECCTTCCTTSTTHHHHHHHHHHTTCEEEEECCSCTTSC---------------CHHHHHHHHHTTGG---GCCTTE
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHhCCCEEEEeccCCCCcc---------------hHHHHHHHHHHHHh---ccCCCc
Confidence 588999954443332245566789999999999999987642 23455555444443 456899
Q ss_pred EEEEeChhHHHHHHHHhhCCCce--eEEEEcCCccchhhccCCCCCCCChhhhhcc-CCCCCHHHHHHHHhcCcccccCC
Q 004368 598 CIEGRSAGGLLIGAVLNMRPDLF--KAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW-GDPWKEEFYFYMKSYSPVDNVKA 674 (758)
Q Consensus 598 ~i~G~S~GG~l~~~~~~~~p~~f--~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~-g~p~~~~~~~~l~~~sp~~~i~~ 674 (758)
.++|+|+||++++.++.++|+.. .++++.+++...... . .....+ ..+...... . +
T Consensus 65 ~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~---~---------~ 123 (186)
T d1uxoa_ 65 YLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPT--------L-QMLDEFTQGSFDHQKI---I---------E 123 (186)
T ss_dssp EEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTT--------C-GGGGGGTCSCCCHHHH---H---------H
T ss_pred EEEEechhhHHHHHHHHhCCccceeeEEeecccccccchh--------h-hhhhhhhccccccccc---c---------c
Confidence 99999999999999999988643 444555554332111 0 001111 111111111 1 1
Q ss_pred CCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC
Q 004368 675 QNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 675 ~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 726 (758)
... |+|++||++|+.||+.+++++++++. .+++.++ ++||...
T Consensus 124 ~~~-p~lvi~g~~D~~vp~~~~~~l~~~~~-----~~~~~~~---~~gH~~~ 166 (186)
T d1uxoa_ 124 SAK-HRAVIASKDDQIVPFSFSKDLAQQID-----AALYEVQ---HGGHFLE 166 (186)
T ss_dssp HEE-EEEEEEETTCSSSCHHHHHHHHHHTT-----CEEEEET---TCTTSCG
T ss_pred CCC-CEEEEecCCCCCCCHHHHHHHHHHcC-----CEEEEeC---CCCCcCc
Confidence 123 49999999999999999999988762 4567775 9999754
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.51 E-value=8.5e-14 Score=137.44 Aligned_cols=210 Identities=13% Similarity=0.093 Sum_probs=127.3
Q ss_pred CEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCc
Q 004368 517 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 596 (758)
Q Consensus 517 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 596 (758)
|.||++||..+.. ..|...+..|.++||.|+.+|+||+|.+... .....++.+....+..+...... ..+
T Consensus 3 ~~vvllHG~~~~~--~~w~~~~~~L~~~g~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~ 72 (258)
T d1xkla_ 3 KHFVLVHGACHGG--WSWYKLKPLLEAAGHKVTALDLAASGTDLRK-------IEELRTLYDYTLPLMELMESLSA-DEK 72 (258)
T ss_dssp CEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEECCCTTSTTCCCC-------GGGCCSHHHHHHHHHHHHHTSCS-SSC
T ss_pred CcEEEECCCCCCH--HHHHHHHHHHHhCCCEEEEecCCCCCCCCCC-------CCCCcchHHHHHHHhhhhhcccc-ccc
Confidence 5788899965543 3477788899999999999999999976432 11223445555555444444332 368
Q ss_pred EEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccC----------CCCCCCC-------------------hhh
Q 004368 597 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML----------DPTIPLT-------------------TAE 647 (758)
Q Consensus 597 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~----------~~~~~~~-------------------~~~ 647 (758)
+.++|+|+||.++..++.++|++++.+|...+..-...... ....... ...
T Consensus 73 ~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T d1xkla_ 73 VILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGPK 152 (258)
T ss_dssp EEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCHH
T ss_pred ccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhcccccccHH
Confidence 89999999999999999999999999998776432110000 0000000 000
Q ss_pred h-h-ccCCCCCHHHH--------------HHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCc
Q 004368 648 W-E-EWGDPWKEEFY--------------FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN 711 (758)
Q Consensus 648 ~-~-e~g~p~~~~~~--------------~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~ 711 (758)
+ . ........+.. ..+...........+.+| +|+++|++|..+|+..++.+++.+. +.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~----~~~ 227 (258)
T d1xkla_ 153 FLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVK-RVYIVCTEDKGIPEEFQRWQIDNIG----VTE 227 (258)
T ss_dssp HHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSC-EEEEEETTCTTTTHHHHHHHHHHHC----CSE
T ss_pred HHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccc-eeEeeecCCCCCCHHHHHHHHHHCC----CCE
Confidence 0 0 00000011111 111222333444555787 9999999999999888888877663 345
Q ss_pred eEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 004368 712 ILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 746 (758)
Q Consensus 712 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 746 (758)
++.++ ++||......++.+.+. +.+|+.++
T Consensus 228 ~~~i~---~~gH~~~~e~P~~~~~~--l~e~~~k~ 257 (258)
T d1xkla_ 228 AIEIK---GADHMAMLCEPQKLCAS--LLEIAHKY 257 (258)
T ss_dssp EEEET---TCCSCHHHHSHHHHHHH--HHHHHHHC
T ss_pred EEEEC---CCCCchHHhCHHHHHHH--HHHHHHhc
Confidence 66665 89997543334433332 45666553
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.50 E-value=6.2e-14 Score=140.87 Aligned_cols=223 Identities=14% Similarity=0.133 Sum_probs=131.3
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC-CCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccC
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK 571 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~ 571 (758)
..||.+++... . |.-|.||++||..+.... ..|...... +++||.|+.+|.||+|..... ..
T Consensus 9 ~~~G~~~~Y~~-----~----G~G~pvvllHG~~~~~~~~~~~~~~~~~-l~~~~~vi~~Dl~G~G~S~~~-------~~ 71 (271)
T d1uk8a_ 9 LAAGVLTNYHD-----V----GEGQPVILIHGSGPGVSAYANWRLTIPA-LSKFYRVIAPDMVGFGFTDRP-------EN 71 (271)
T ss_dssp EETTEEEEEEE-----E----CCSSEEEEECCCSTTCCHHHHHTTTHHH-HTTTSEEEEECCTTSTTSCCC-------TT
T ss_pred EECCEEEEEEE-----E----eeCCeEEEECCCCCCccHHHHHHHHHHH-HhCCCEEEEEeCCCCCCcccc-------cc
Confidence 34888776431 1 234678889996543322 112333333 457999999999999976432 11
Q ss_pred CcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhc------cCCCCCCCCh
Q 004368 572 KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT------MLDPTIPLTT 645 (758)
Q Consensus 572 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~------~~~~~~~~~~ 645 (758)
....+++..+.+..+.+.- +.+++.++|+|+||.+++.++.++|++++++|+..+....... ... ..+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~-~~~~~~ 148 (271)
T d1uk8a_ 72 YNYSKDSWVDHIIGIMDAL--EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWG-YTPSIE 148 (271)
T ss_dssp CCCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHT-CCSCHH
T ss_pred ccccccccchhhhhhhhhh--cCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhh-ccchhH
Confidence 2234567777777766653 3478999999999999999999999999999987664221000 000 000000
Q ss_pred ---hhhhcc-------------------CCCCCHHHH---------HHH-HhcCcccccCCCCCCeEEEeccCCCCCCCC
Q 004368 646 ---AEWEEW-------------------GDPWKEEFY---------FYM-KSYSPVDNVKAQNYPHILVTAGLNDPRVMY 693 (758)
Q Consensus 646 ---~~~~e~-------------------g~p~~~~~~---------~~l-~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~ 693 (758)
.....+ -.+...+.+ ..+ ........++++++| +|+++|++|..+|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~ 227 (271)
T d1uk8a_ 149 NMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNE-TLIIHGREDQVVPL 227 (271)
T ss_dssp HHHHHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSC-EEEEEETTCSSSCH
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccc-eeEEecCCCCCcCH
Confidence 000000 000000000 000 111223446677888 99999999999999
Q ss_pred hHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 694 SEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 694 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
..+.++.+.+. ..++++++ ++||.......+.+.+ .+.+||.+
T Consensus 228 ~~~~~~~~~~~----~~~~~~~~---~~gH~~~~e~p~~~~~--~i~~Fl~e 270 (271)
T d1uk8a_ 228 SSSLRLGELID----RAQLHVFG---RCGHWTQIEQTDRFNR--LVVEFFNE 270 (271)
T ss_dssp HHHHHHHHHCT----TEEEEEES---SCCSCHHHHTHHHHHH--HHHHHHHT
T ss_pred HHHHHHHHhCC----CCEEEEEC---CCCCchHHHCHHHHHH--HHHHHHhc
Confidence 88888777653 24566665 8999754333333332 35678764
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.50 E-value=6.2e-14 Score=140.65 Aligned_cols=223 Identities=19% Similarity=0.199 Sum_probs=128.8
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC-CCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCC
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 572 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~ 572 (758)
.||.+|... .. |+.|.||++||..+.... ..|...... +++||.|+.+|.||+|.... ...
T Consensus 9 ~dg~~l~y~---~~------G~g~~vvllHG~~~~~~~~~~~~~~~~~-l~~~~~v~~~D~~G~G~S~~--------~~~ 70 (268)
T d1j1ia_ 9 AGGVETRYL---EA------GKGQPVILIHGGGAGAESEGNWRNVIPI-LARHYRVIAMDMLGFGKTAK--------PDI 70 (268)
T ss_dssp ETTEEEEEE---EE------CCSSEEEEECCCSTTCCHHHHHTTTHHH-HTTTSEEEEECCTTSTTSCC--------CSS
T ss_pred ECCEEEEEE---EE------cCCCeEEEECCCCCCccHHHHHHHHHHH-HhcCCEEEEEcccccccccC--------Ccc
Confidence 489887643 11 234678899997543321 123333334 46799999999999986542 122
Q ss_pred cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhcc--CCC--CCCCChhhh
Q 004368 573 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM--LDP--TIPLTTAEW 648 (758)
Q Consensus 573 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~--~~~--~~~~~~~~~ 648 (758)
...++++...+..+++.-.. .+++.++|+|+||.+++.++.++|++++++|+..|..-..... ... .........
T Consensus 71 ~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (268)
T d1j1ia_ 71 EYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGM 149 (268)
T ss_dssp CCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHH
T ss_pred ccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhhhhhhhhh
Confidence 23455555555554443222 3579999999999999999999999999999877642211100 000 000000000
Q ss_pred ----hcc---CCCCCHHH--------------------HHHHHh----cCcccccCCCCCCeEEEeccCCCCCCCChHHH
Q 004368 649 ----EEW---GDPWKEEF--------------------YFYMKS----YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPA 697 (758)
Q Consensus 649 ----~e~---g~p~~~~~--------------------~~~l~~----~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~ 697 (758)
... +.....+. ...+.. .+....++++++| +|+++|++|..+|++.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~l~i~G~~D~~~~~~~~~ 228 (268)
T d1j1ia_ 150 VHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVP-TLVVQGKDDKVVPVETAY 228 (268)
T ss_dssp HHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSC-EEEEEETTCSSSCHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCC-EEEEEeCCCCCCCHHHHH
Confidence 000 00001000 011111 1112335667888 999999999999988888
Q ss_pred HHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 004368 698 KFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 745 (758)
Q Consensus 698 ~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 745 (758)
++.+.+. +.++++++ ++||.......+.+.+. +.+||.+
T Consensus 229 ~~~~~~~----~~~~~~~~---~~gH~~~~e~p~~~~~~--i~~FL~~ 267 (268)
T d1j1ia_ 229 KFLDLID----DSWGYIIP---HCGHWAMIEHPEDFANA--TLSFLSL 267 (268)
T ss_dssp HHHHHCT----TEEEEEES---SCCSCHHHHSHHHHHHH--HHHHHHH
T ss_pred HHHHhCC----CCEEEEEC---CCCCchHHhCHHHHHHH--HHHHHcC
Confidence 7777653 34566775 89997543333333332 5678765
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.50 E-value=1.4e-13 Score=138.47 Aligned_cols=121 Identities=15% Similarity=0.165 Sum_probs=81.1
Q ss_pred eeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccccc
Q 004368 491 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 570 (758)
Q Consensus 491 ~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~ 570 (758)
+...++..|.+. |-. . |+.|.||++||..+.. ..|......|+++||.|+.+|.||+|.+.. .
T Consensus 5 ~~~~~~~~v~i~--y~~-~----G~G~~ivllHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~--------~ 67 (277)
T d1brta_ 5 VGQENSTSIDLY--YED-H----GTGQPVVLIHGFPLSG--HSWERQSAALLDAGYRVITYDRRGFGQSSQ--------P 67 (277)
T ss_dssp EEEETTEEEEEE--EEE-E----CSSSEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCC--------C
T ss_pred EecCcCCcEEEE--EEE-E----ccCCeEEEECCCCCCH--HHHHHHHHHHHhCCCEEEEEeCCCCCcccc--------c
Confidence 444555555543 221 1 3457899999965543 336666778889999999999999987642 1
Q ss_pred CCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHH-HHHHHHhhCCCceeEEEEcCCcc
Q 004368 571 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGL-LIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~-l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
....+++++.+.+..+++.- +.+++.++|+|+||. ++..++.++|++++++|+..++.
T Consensus 68 ~~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~ 126 (277)
T d1brta_ 68 TTGYDYDTFAADLNTVLETL--DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLE 126 (277)
T ss_dssp SSCCSHHHHHHHHHHHHHHH--TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred ccccchhhhhhhhhhhhhcc--CcccccccccccchhhhhHHHHHhhhcccceEEEecCCC
Confidence 12234556655555444431 346899999999975 55556777899999999877643
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=1.4e-13 Score=140.31 Aligned_cols=249 Identities=16% Similarity=0.145 Sum_probs=148.9
Q ss_pred eeEEEEeeCC-CCeEEEEEEEeecccc----ccCCCCCEEEEecCCCccCCCCCC-ChHHHHHHHcCcEEEEEecCCC--
Q 004368 485 FTERKWASAS-DGTQIPICIVYRKNLV----KLDGSDPLLLYGYGSYEICNDPAF-NSSRLSLLDRGFIFAIAQIRGG-- 556 (758)
Q Consensus 485 ~~~~~~~~s~-dG~~i~~~l~~p~~~~----~~~~~~P~vl~~hGg~~~~~~~~~-~~~~~~l~~~G~~v~~~~~RG~-- 556 (758)
...++++.|. -|.++++.|+.|+++. .+++++|+|++.||..+....+.- ........+.|.+|+.++.-..
T Consensus 13 ~~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~vv~~~~~p~~~ 92 (299)
T d1pv1a_ 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRGD 92 (299)
T ss_dssp EEEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEECCSSCCST
T ss_pred EEEEEEEECcccCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCCHHHHHHhhhHHHHHHHcCCceecCCCccccc
Confidence 4567777765 4788999999998751 134679999999996553221110 1112344457999999874211
Q ss_pred ---C--------CCchhHHhcccc--cCCcChHhHHHH--HHHHHHHcCC-------CCCCcEEEEEeChhHHHHHHHHh
Q 004368 557 ---G--------ELGRQWYENGKF--LKKKNTFTDFIA--CAEYLIKNCY-------CTKEKLCIEGRSAGGLLIGAVLN 614 (758)
Q Consensus 557 ---g--------~~G~~~~~~~~~--~~~~~~~~D~~~--~~~~l~~~~~-------~d~~~i~i~G~S~GG~l~~~~~~ 614 (758)
+ +.+..|+..... ..+...+.|++. .+.++.++-- .++++.+|+|+||||+.|+.++.
T Consensus 93 ~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl~~al 172 (299)
T d1pv1a_ 93 EVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYL 172 (299)
T ss_dssp TSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHHHHHH
T ss_pred ccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHHHHHH
Confidence 0 111222221110 001122344332 3334433322 34468999999999999988876
Q ss_pred h--CCCceeEEEEcCCccchhhccCCCCCCCChhhhh-ccCCCCCHHHHHHHHhcCccccc---CCCCCCeEEEeccCCC
Q 004368 615 M--RPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE-EWGDPWKEEFYFYMKSYSPVDNV---KAQNYPHILVTAGLND 688 (758)
Q Consensus 615 ~--~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~-e~g~p~~~~~~~~l~~~sp~~~i---~~~~~P~~Li~~G~~D 688 (758)
+ +|++|.++++.+|+.+..... .....+. .+|+.. .....++|...+ ++...|++++.+|.+|
T Consensus 173 ~~~~p~~f~~~~s~s~~~~~~~~~------~~~~~~~~~~g~~~-----~~~~~~~~~~l~~~~~~~~~~~i~~~~G~~D 241 (299)
T d1pv1a_ 173 KGYSGKRYKSCSAFAPIVNPSNVP------WGQKAFKGYLGEEK-----AQWEAYDPCLLIKNIRHVGDDRILIHVGDSD 241 (299)
T ss_dssp HTGGGTCCSEEEEESCCCCSTTSH------HHHHHHHHHSCC---------CGGGCHHHHGGGSCCCTTCCEEEECCTTC
T ss_pred HhcCCCceEEEeeccCcCCccccc------chhhhhhhhcccch-----hhhhhcCHHHHHHHhhccCCcceeEecCCCC
Confidence 5 589999999999987643221 1111111 223321 112345555443 3345677999999999
Q ss_pred CCCCCh-HHHHHHHHHHhcCCCCceEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 004368 689 PRVMYS-EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 749 (758)
Q Consensus 689 ~~V~~~-~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 749 (758)
...+.. .+..|.+++++++.+.. +.|...++.+|. ..-.-..+.+.+.|+.++||+
T Consensus 242 ~~~~~~~~~~~f~~~~~~~g~~~~-~~~~~~~G~~Hs----w~yW~~~i~~~l~f~a~~lgl 298 (299)
T d1pv1a_ 242 PFLEEHLKPELLLEAVKATSWQDY-VEIKKVHGFDHS----YYFVSTFVPEHAEFHARNLGL 298 (299)
T ss_dssp TTTTTTCCTHHHHHHHTTSTTTTS-EEEECCTTCCSS----HHHHHHHHHHHHHHHHHHTTC
T ss_pred cchhhhhcHHHHHHHHHhcCCCcc-eEEEecCCCCcC----HHHHHHHHHHHHHHHHHhcCC
Confidence 877654 46789999999988764 456655666795 222223355678999999986
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.49 E-value=8.4e-14 Score=141.01 Aligned_cols=214 Identities=16% Similarity=0.155 Sum_probs=118.4
Q ss_pred CCCEEEEecCCCccCCC-CCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 515 SDPLLLYGYGSYEICND-PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
..|+||++||..+.... ..|......| .+||.|+++|.||+|.+...-. ........+++.+..+..++++- .
T Consensus 25 ~~p~ivllHG~~~~~~~~~~~~~~~~~L-~~~~~vi~~D~~G~G~S~~~~~---~~~~~~~~~~~~~~~i~~~i~~~--~ 98 (281)
T d1c4xa_ 25 QSPAVVLLHGAGPGAHAASNWRPIIPDL-AENFFVVAPDLIGFGQSEYPET---YPGHIMSWVGMRVEQILGLMNHF--G 98 (281)
T ss_dssp TSCEEEEECCCSTTCCHHHHHGGGHHHH-HTTSEEEEECCTTSTTSCCCSS---CCSSHHHHHHHHHHHHHHHHHHH--T
T ss_pred CCCEEEEECCCCCCCcHHHHHHHHHHHH-hCCCEEEEEeCCCCcccccccc---ccccchhhHHHhhhhcccccccc--c
Confidence 46899999995443222 1244444444 4699999999999987642100 00000112334333333333321 2
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhh-----------ccCCCCCCCChhhhhcc-CCCCC----H
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT-----------TMLDPTIPLTTAEWEEW-GDPWK----E 657 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~-----------~~~~~~~~~~~~~~~e~-g~p~~----~ 657 (758)
.+++.++|+|+||.++..++.++|++++++|+..+...... .............+..+ .++.. .
T Consensus 99 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (281)
T d1c4xa_ 99 IEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYADPRLTPYRELIHSFVYDPENFPGME 178 (281)
T ss_dssp CSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGSCCHHHHHHHHHTTSSCSTTCTTHH
T ss_pred cccceeccccccccccccccccccccccceEEeccccCccccchhHHHHHHHhhhhcccchhhhhhhhhcccccccchhh
Confidence 36899999999999999999999999999998876422111 00000000000000011 11100 0
Q ss_pred H--------------------HHHHHH-----hcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCce
Q 004368 658 E--------------------FYFYMK-----SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 712 (758)
Q Consensus 658 ~--------------------~~~~l~-----~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~ 712 (758)
. .+..+. ...+...+.+++.| +|+++|++|..+|+..+.++.+.+. ..++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~~~~~----~~~~ 253 (281)
T d1c4xa_ 179 EIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHD-VLVFHGRQDRIVPLDTSLYLTKHLK----HAEL 253 (281)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSC-EEEEEETTCSSSCTHHHHHHHHHCS----SEEE
T ss_pred hHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhhhccc-eEEEEeCCCCCcCHHHHHHHHHHCC----CCEE
Confidence 0 000000 01122335666788 9999999999999998888877653 2356
Q ss_pred EEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 713 LLFKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 713 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
++++ ++||.......+.+.+. +.+||.
T Consensus 254 ~~i~---~~gH~~~~e~p~~~~~~--i~~Fl~ 280 (281)
T d1c4xa_ 254 VVLD---RCGHWAQLERWDAMGPM--LMEHFR 280 (281)
T ss_dssp EEES---SCCSCHHHHSHHHHHHH--HHHHHH
T ss_pred EEEC---CCCCchHHhCHHHHHHH--HHHHhC
Confidence 6665 89997543333333322 456664
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.49 E-value=2.5e-13 Score=139.74 Aligned_cols=121 Identities=13% Similarity=0.063 Sum_probs=89.4
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCC
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 572 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~ 572 (758)
+.||.+++..-. ......|+||++||..+.. ..|......|+++||.|+++|.||.|.+... ....
T Consensus 30 ~~~g~~~~y~~~------G~~~~~p~llllHG~~~~~--~~~~~~~~~l~~~~~~vi~~Dl~G~G~S~~~------~~~~ 95 (310)
T d1b6ga_ 30 GYPGLRAHYLDE------GNSDAEDVFLCLHGEPTWS--YLYRKMIPVFAESGARVIAPDFFGFGKSDKP------VDEE 95 (310)
T ss_dssp TCTTCEEEEEEE------ECTTCSCEEEECCCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCEE------SCGG
T ss_pred CCCCEEEEEEEe------cCCCCCCEEEEECCCCCch--HHHHHHHHHhhccCceEEEeeecCccccccc------cccc
Confidence 458988864311 1123469999999965543 3366677889999999999999999976531 1112
Q ss_pred cChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 573 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 573 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
..+++++.+.+..+++.- +.+++.++|+|+||.++..++.++|++++++|+..+.
T Consensus 96 ~~~~~~~~~~l~~~l~~l--~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~ 150 (310)
T d1b6ga_ 96 DYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC 150 (310)
T ss_dssp GCCHHHHHHHHHHHHHHH--TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCC
T ss_pred cccccccccchhhhhhhc--cccccccccceecccccccchhhhccccceEEEEcCc
Confidence 235677777777766642 3478999999999999999999999999999987654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.46 E-value=1.7e-11 Score=133.89 Aligned_cols=274 Identities=13% Similarity=0.071 Sum_probs=156.7
Q ss_pred CceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCC----CCeEEEEEEEECCCCceeecc-ccCcceeEEEecCC-
Q 004368 174 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTK----GDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE- 247 (758)
Q Consensus 174 ~~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~----G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg- 247 (758)
.+++|++...+.... ..+.+++|||||++|||..+.. .+...+++|+|+++|+...+. .++....+.|||||
T Consensus 47 ~~~~~~~~~~~~~~~--~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~ 124 (470)
T d2bgra1 47 NSSVFLENSTFDEFG--HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGH 124 (470)
T ss_dssp CEEEEECTTTTTTSS--SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTT
T ss_pred CEEEEEchhhhhhcc--CccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcc
Confidence 567888987775422 2467889999999999987632 233568999999999887653 33345669999999
Q ss_pred eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCC-----------------ceeeEEEEcCCCcEEEEEecCCc---
Q 004368 248 ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDD-----------------IYSLGLQASESKKFLFIASESKI--- 307 (758)
Q Consensus 248 ~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~-----------------~~~~~~~~S~Dg~~l~~~s~~~~--- 307 (758)
.|+|++.. ++|+.++.++.. ..+...... .....+.|||||++|++...+..
T Consensus 125 ~ia~~~~~------~l~~~~~~~g~~--~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~ 196 (470)
T d2bgra1 125 KLAYVWNN------DIYVKIEPNLPS--YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP 196 (470)
T ss_dssp CEEEEETT------EEEEESSTTSCC--EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC
T ss_pred eeeEeecc------cceEEECCCCce--eeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCc
Confidence 89997532 478777766632 222211100 01123669999999998753210
Q ss_pred ------------------------------ceEEEEEeCCCCC-c--e--E---------------------------E-
Q 004368 308 ------------------------------TRFVFYLDVSKPE-E--L--R---------------------------V- 324 (758)
Q Consensus 308 ------------------------------~~~l~~~d~~~~~-~--~--~---------------------------~- 324 (758)
...++++++.++. . . . .
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 276 (470)
T d2bgra1 197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ 276 (470)
T ss_dssp EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred eEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence 0134555543321 0 0 0 0
Q ss_pred eeccccc--------------------------------------eeeEEeecCCEE-EEEEcCCCCCCcEEEEEeCCCC
Q 004368 325 LTPRVVG--------------------------------------VDTAASHRGNHF-FITRRSDELFNSELLACPVDNT 365 (758)
Q Consensus 325 l~~~~~~--------------------------------------~~~~~s~dg~~l-~~~s~~~~~~~~~L~~~~~~~~ 365 (758)
...+..+ ....++++++.. ++.+..+ ...+||.++.++
T Consensus 277 ~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~d--g~~~ly~~~~~g- 353 (470)
T d2bgra1 277 WLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE--GYRHICYFQIDK- 353 (470)
T ss_dssp EEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTT--SCEEEEEEETTC-
T ss_pred EeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccC--cCceeEEEeccC-
Confidence 0000000 001133334333 3444443 245788888765
Q ss_pred CcceeeecCCCCceeeeEEEeCCEEEEEEEeCC----eeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCC
Q 004368 366 SETTVLIPHRESVKLQDIQLFIDHLAVYEREGG----LQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSS 441 (758)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~ 441 (758)
....++......+ ..-+.++++.+++.+...+ ..+|+.++++. +...++|+.. +......+..+++++|+
T Consensus 354 ~~~~~lt~g~~~v-~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g-~~~~~~lt~~----~~~~~~~~~s~~fSpdg 427 (470)
T d2bgra1 354 KDCTFITKGTWEV-IGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSD-YTKVTCLSCE----LNPERCQYYSVSFSKEA 427 (470)
T ss_dssp SCCEESCCSSSCE-EEEEEECSSEEEEEESCGGGCTTCBEEEEEETTC-TTCEEESSTT----TSTTTBCBEEEEECTTS
T ss_pred CceeeeccCCeeE-EEEEEECCCEEEEEEecCCCCcceEEEEEEECCC-CCceeEeccc----ccCCCCCEEEEEECCCC
Confidence 3344455443332 3335678888888776443 23566566652 2323333211 11111123345678999
Q ss_pred cEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 442 RILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 442 ~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
+.++.+++++..|. +..++..+++.
T Consensus 428 ky~~~~~s~~~~P~-~~l~~~~~g~~ 452 (470)
T d2bgra1 428 KYYQLRCSGPGLPL-YTLHSSVNDKG 452 (470)
T ss_dssp SEEEEEECSBSSCE-EEEEETTTTEE
T ss_pred CEEEEEecCCCCCe-EEEEECCCCCE
Confidence 99999999999997 45667777763
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.45 E-value=2.4e-13 Score=137.05 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=81.5
Q ss_pred EeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccc
Q 004368 490 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 569 (758)
Q Consensus 490 ~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~ 569 (758)
++.+.++..|.+ +|... |..|.||++||..+.+ ..|...+..|+++||.|+.+|.||.|.+...
T Consensus 4 ~~~~~~~~~v~i--~y~~~-----G~g~~illlHG~~~~~--~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~------- 67 (279)
T d1hkha_ 4 TVGNENSTPIEL--YYEDQ-----GSGQPVVLIHGYPLDG--HSWERQTRELLAQGYRVITYDRRGFGGSSKV------- 67 (279)
T ss_dssp EEEEETTEEEEE--EEEEE-----SSSEEEEEECCTTCCG--GGGHHHHHHHHHTTEEEEEECCTTSTTSCCC-------
T ss_pred EEecCCCCeEEE--EEEEE-----ccCCeEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEEechhhCCcccc-------
Confidence 344555555543 34321 3457889999965543 3366667788899999999999999876421
Q ss_pred cCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhH-HHHHHHHhhCCCceeEEEEcCCc
Q 004368 570 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGG-LLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG-~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
....+++++...+..+++. .+.+++.++|+|+|| .++..++.++|++++++|+.++.
T Consensus 68 -~~~~~~~~~~~di~~~i~~--l~~~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~ 125 (279)
T d1hkha_ 68 -NTGYDYDTFAADLHTVLET--LDLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASL 125 (279)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred -ccccchhhhhhhhhhhhhh--cCcCccccccccccccchhhhhccccccccceeEEeecc
Confidence 2234566665555554443 234689999999996 45556677789999999887654
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.45 E-value=1.9e-13 Score=138.65 Aligned_cols=116 Identities=12% Similarity=0.058 Sum_probs=82.6
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 573 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~ 573 (758)
.||.+|+....-+ +..|+||++||..+... .|...+..| ..||.|+.+|.||.|..... ...
T Consensus 14 ~~g~~i~y~~~G~-------~~~p~lvllHG~~~~~~--~~~~~~~~L-~~~~~vi~~d~~G~G~S~~~--------~~~ 75 (291)
T d1bn7a_ 14 VLGERMHYVDVGP-------RDGTPVLFLHGNPTSSY--LWRNIIPHV-APSHRCIAPDLIGMGKSDKP--------DLD 75 (291)
T ss_dssp ETTEEEEEEEESC-------SSSSCEEEECCTTCCGG--GGTTTHHHH-TTTSCEEEECCTTSTTSCCC--------SCC
T ss_pred ECCEEEEEEEeCC-------CCCCeEEEECCCCCCHH--HHHHHHHHH-hcCCEEEEEeCCCCcccccc--------ccc
Confidence 4888887543211 23467889999665443 355555555 56999999999999876421 123
Q ss_pred ChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 574 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 574 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
.+++++.+.+..++++ .+-+++.++|+|+||.++..++.++|+.++++++..+.
T Consensus 76 ~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~ 129 (291)
T d1bn7a_ 76 YFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 129 (291)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEEC
T ss_pred cchhHHHHHHhhhhhh--hccccccccccccccchhHHHHHhCCcceeeeeeeccc
Confidence 4556666666666554 23478999999999999999999999999999876543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.45 E-value=2.3e-12 Score=129.91 Aligned_cols=242 Identities=9% Similarity=0.072 Sum_probs=150.5
Q ss_pred EEECCC--CCEEEEEEeCCCCeEEEEEEEECCCCceeeccc-cCcceeEEEecCC-eEEEEEeCCCC-CCceEEEEEcCC
Q 004368 196 FQVSPD--NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEIL-RPDKAWLHKLEA 270 (758)
Q Consensus 196 ~~~SPD--G~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~wspDg-~l~y~~~~~~~-~~~~v~~~~l~~ 270 (758)
+.+||| |++|||+.+ | +||++|+++|+.++++. ++....++||||| +|+|++..... ...++|..++.+
T Consensus 4 ~~~sPdi~G~~v~f~~~--~----dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~ 77 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCC--D----DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN 77 (281)
T ss_dssp CCEEEEEETTEEEEEET--T----EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred cccCCCCCCCEEEEEeC--C----cEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence 357999 999999865 3 59999999999987743 3456779999999 89999864433 335799989877
Q ss_pred CCCCcEEEeeec----CC-ceeeEEEEcCCCcEEEEEecCCc---ceEEEEEeCCCCCceEEeeccccceeeEEeecCCE
Q 004368 271 DQSNDICLYHEK----DD-IYSLGLQASESKKFLFIASESKI---TRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNH 342 (758)
Q Consensus 271 ~~~~~~~v~~~~----~~-~~~~~~~~S~Dg~~l~~~s~~~~---~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~ 342 (758)
+. ...+.... .. .....+.|+|||+.|++...... ...++.++.+++. .+..... .....+.++++.
T Consensus 78 g~--~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~ 152 (281)
T d1k32a2 78 GE--IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN-FVPLNLG--PATHILFADGRR 152 (281)
T ss_dssp TE--EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE-EEECCSC--SCSEEEEETTEE
T ss_pred Cc--eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce-eEEecCC--ccceeeecCCCe
Confidence 63 23332211 11 11235679999999998765432 2456777776654 4433322 223457788887
Q ss_pred EEEEEcCCCCC---------CcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCc
Q 004368 343 FFITRRSDELF---------NSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEP 413 (758)
Q Consensus 343 l~~~s~~~~~~---------~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~ 413 (758)
+++........ ...+..... .....++.... ......+.++.+++....++..+|++++++ |+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~ 225 (281)
T d1k32a2 153 VIGRNTFELPHWKGYRGGTRGKIWIEVNS---GAFKKIVDMST--HVSSPVIVGHRIYFITDIDGFGQIYSTDLD--GKD 225 (281)
T ss_dssp EEEESCSCCTTSTTCCSTTCCEEEEEEET---TEEEEEECCSS--CCEEEEEETTEEEEEECTTSSCEEEEEETT--SCS
T ss_pred EEEeeccccceeeeeccCCcceeeeeccc---cceeeccCCcc--ccceeeeeccccceecccccccceEEEeCC--CCc
Confidence 77765543110 111111111 11122222221 234556778888888888888889999887 554
Q ss_pred cccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEE
Q 004368 414 LKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 469 (758)
Q Consensus 414 ~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~ 469 (758)
.+.|+... . .....+++|++.|+|... ..+|.+|+++++.+.
T Consensus 226 ~~~lt~~~-------~--~~~~~~SpDG~~I~f~~~-----~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 226 LRKHTSFT-------D--YYPRHLNTDGRRILFSKG-----GSIYIFNPDTEKIEK 267 (281)
T ss_dssp CEECCCCC-------S--SCEEEEEESSSCEEEEET-----TEEEEECTTTCCEEE
T ss_pred eEEeecCC-------C--cccccCcCCCCEEEEEeC-----CEEEEEECCCCCEEE
Confidence 43332211 1 111346789999887543 579999999998443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.7e-12 Score=141.64 Aligned_cols=260 Identities=11% Similarity=0.075 Sum_probs=150.6
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC--------------------cceeEEEecCC-eEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--------------------VTASVEWAGNE-ALVY 251 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--------------------~~~~~~wspDg-~l~y 251 (758)
+..+.|||||++|||+.+ .+||++++.+++..+++..+ ...++.||||| +|+|
T Consensus 116 l~~~~wSPDG~~iafv~~------~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf 189 (465)
T d1xfda1 116 LQYAGWGPKGQQLIFIFE------NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY 189 (465)
T ss_dssp CSBCCBCSSTTCEEEEET------TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEE
T ss_pred cceeeeccCCceEEEEec------ceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEE
Confidence 456899999999999985 36999999888766543221 12457799999 8999
Q ss_pred EEeCCCCC-----------------------------CceEEEEEcCCCCCCcEEEeeec----CCceeeEEEEcCCCcE
Q 004368 252 ITMDEILR-----------------------------PDKAWLHKLEADQSNDICLYHEK----DDIYSLGLQASESKKF 298 (758)
Q Consensus 252 ~~~~~~~~-----------------------------~~~v~~~~l~~~~~~~~~v~~~~----~~~~~~~~~~S~Dg~~ 298 (758)
.+.++... ..+|+++++.++.. ........ ...+...+.|++|++.
T Consensus 190 ~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~-~~~~~~~~~~~~~~~y~~~~~W~~d~~~ 268 (465)
T d1xfda1 190 AAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTKV 268 (465)
T ss_dssp EEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred EEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcE-EEEEeccCcCccccceeeeeEEcCCCeE
Confidence 98664311 02456666655432 22221111 1223446789999997
Q ss_pred EEEEecCC-cceEEEEEeCCCCCceEEeeccc-c-c-----eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC------
Q 004368 299 LFIASESK-ITRFVFYLDVSKPEELRVLTPRV-V-G-----VDTAASHRGNHFFITRRSDELFNSELLACPVDN------ 364 (758)
Q Consensus 299 l~~~s~~~-~~~~l~~~d~~~~~~~~~l~~~~-~-~-----~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~------ 364 (758)
++...++. ....++++|..+++ .+.+.... . . ....|++||+.++|+.........+++.+.+..
T Consensus 269 ~~~~~nR~q~~~~i~~~d~~tg~-~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~ 347 (465)
T d1xfda1 269 AVTWLNRAQNVSILTLCDATTGV-CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347 (465)
T ss_dssp EEEEEETTSCEEEEEEEETTTCC-EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred EEEEEccccccceEEEEcCCCCc-EEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCC
Confidence 77666653 44689999999987 55443321 1 1 123599999988776322112234555544321
Q ss_pred CCcceeeecCCCCc-eeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCc-cccccCCceeeccCcccccCCCCcccCCc
Q 004368 365 TSETTVLIPHRESV-KLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEP-LKSLQGGKSVEFIDPVYSIDPSESVFSSR 442 (758)
Q Consensus 365 ~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~-~~~l~~~~~i~~p~~~~~i~~~~~~~d~~ 442 (758)
....+.++....++ .+..++..++.++|.+..++..+-.+|.++.+|.. .++++.. +.+.. ....++++++++
T Consensus 348 ~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~----~~~~~-~~~~~~~S~~~~ 422 (465)
T d1xfda1 348 NDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD----LVENC-TYFSASFSHSMD 422 (465)
T ss_dssp SCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT----SSSSC-CCCEEEECTTSS
T ss_pred CceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccc----cCCCC-CEEEEEECCCCC
Confidence 11123355444432 22233334578888876554223334444443442 2222211 11111 123456788999
Q ss_pred EEEEEEecCCCCCEEEEEECCCCc
Q 004368 443 ILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 443 ~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.++..++++..|. +..++..+++
T Consensus 423 y~v~~~s~~~~P~-~~~~~~~~~~ 445 (465)
T d1xfda1 423 FFLLKCEGPGVPM-VTVHNTTDKK 445 (465)
T ss_dssp EEEEECCSSSSCC-EEEEETTTCC
T ss_pred EEEEEeecCCCCe-EEEEECCCCC
Confidence 9999999999887 5566666666
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.45 E-value=1.4e-13 Score=139.23 Aligned_cols=147 Identities=10% Similarity=-0.034 Sum_probs=100.3
Q ss_pred ceeEEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCC-CCChHHH----HHHH----cCcEEEEEecC
Q 004368 484 YFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNSSRL----SLLD----RGFIFAIAQIR 554 (758)
Q Consensus 484 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~~~----~l~~----~G~~v~~~~~R 554 (758)
-+++.+++++.+|+ .++.|+.|+++ ++++++|+|++.||+.+..... .+..... .+.. ..++|+.++.+
T Consensus 25 g~v~~~~~~~~~~~-r~~~vylP~~y-~~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 102 (273)
T d1wb4a1 25 GRIVKETYTGINGT-KSLNVYLPYGY-DPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFN 102 (273)
T ss_dssp CEEEEEEEEETTEE-EEEEEEECTTC-CTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEECCSC
T ss_pred CeEEEEEEecCCCe-EEEEEEeCCCC-CCCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeeccccC
Confidence 46788899998885 58999999998 7888999999999987654332 1221111 2222 26889999988
Q ss_pred CCCCCchhHHhcccccCCcC-hHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccch
Q 004368 555 GGGELGRQWYENGKFLKKKN-TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDV 632 (758)
Q Consensus 555 G~g~~G~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~ 632 (758)
+....+..+........... ...++...+..+..+..+|+++++|+|+|+||++++.++.++||+|+++++.+|..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~~~~ 181 (273)
T d1wb4a1 103 GGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWY 181 (273)
T ss_dssp STTCCTTTHHHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCCB
T ss_pred CCCCccccchhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCccccc
Confidence 87776665543222111100 0011111122223334579999999999999999999999999999999999997643
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.45 E-value=2.1e-13 Score=134.82 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=76.2
Q ss_pred EEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCCcEE
Q 004368 519 LLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLC 598 (758)
Q Consensus 519 vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~ 598 (758)
+|++||..+.+ ..|...+..|.++||.|+.+|+||+|..... .....++++..+.+..++.+- ...+++.
T Consensus 5 ~vliHG~~~~~--~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~-------~~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 74 (256)
T d3c70a1 5 FVLIHTICHGA--WIWHKLKPLLEALGHKVTALDLAASGVDPRQ-------IEEIGSFDEYSEPLLTFLEAL-PPGEKVI 74 (256)
T ss_dssp EEEECCTTCCG--GGGTTHHHHHHHTTCEEEEECCTTSTTCSCC-------GGGCCSHHHHTHHHHHHHHHS-CTTCCEE
T ss_pred EEEeCCCCCCH--HHHHHHHHHHHhCCCEEEEEcCCCCCCCCCC-------CCCCCCHHHHHHHhhhhhhhh-cccccee
Confidence 57799965543 4477778889999999999999999976532 112234566666665543332 2357899
Q ss_pred EEEeChhHHHHHHHHhhCCCceeEEEEcCCcc
Q 004368 599 IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 599 i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
++|+|+||.+++.++.++|++++++|+..+..
T Consensus 75 lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 106 (256)
T d3c70a1 75 LVGESCGGLNIAIAADKYCEKIAAAVFHNSVL 106 (256)
T ss_dssp EEEETTHHHHHHHHHHHHGGGEEEEEEESCCC
T ss_pred ecccchHHHHHHHHhhcCchhhhhhheecccc
Confidence 99999999999999999999999999877643
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.42 E-value=1.9e-12 Score=133.56 Aligned_cols=126 Identities=16% Similarity=0.034 Sum_probs=88.7
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhc
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 566 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~ 566 (758)
++-.+++.||.+|....+-. .+.|.||++||+++....+. . ...++..||.|+++|.||.|.+...
T Consensus 12 ~~~~i~~~dg~~i~y~~~G~-------~~g~pvvllHG~~g~~~~~~--~-~~~~l~~~~~Vi~~D~rG~G~S~~~---- 77 (313)
T d1azwa_ 12 QQGSLKVDDRHTLYFEQCGN-------PHGKPVVMLHGGPGGGCNDK--M-RRFHDPAKYRIVLFDQRGSGRSTPH---- 77 (313)
T ss_dssp EEEEEECSSSCEEEEEEEEC-------TTSEEEEEECSTTTTCCCGG--G-GGGSCTTTEEEEEECCTTSTTSBST----
T ss_pred CCCEEEeCCCcEEEEEEecC-------CCCCEEEEECCCCCCccchH--H-HhHHhhcCCEEEEEeccccCCCCcc----
Confidence 55566778998776543211 23466788999876544332 2 2334567999999999999876421
Q ss_pred ccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc
Q 004368 567 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 567 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
......++.++.+.+..++++- ..+++.++|+|+||.+++.++.++|++++++++.+++.
T Consensus 78 --~~~~~~~~~~~~~dl~~~~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 137 (313)
T d1azwa_ 78 --ADLVDNTTWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp --TCCTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred --ccccchhHHHHHHHHHHHHHhh--ccccceeEEecCCcHHHHHHHHHhhhceeeeeEecccc
Confidence 1223345677777777666652 34789999999999999999999999999999887643
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.36 E-value=6e-12 Score=127.32 Aligned_cols=122 Identities=15% Similarity=0.083 Sum_probs=82.5
Q ss_pred EEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhccc
Q 004368 489 KWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGK 568 (758)
Q Consensus 489 ~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~ 568 (758)
..+.. +|.+|+... . |..|+||++||..+.. ..|...+..| .+||.|+++|.||.|...... .
T Consensus 11 ~~~~~-~~~~l~y~~-----~----G~gp~vv~lHG~~~~~--~~~~~~~~~l-~~~~~vi~~D~~G~G~s~~~~----~ 73 (293)
T d1ehya_ 11 YEVQL-PDVKIHYVR-----E----GAGPTLLLLHGWPGFW--WEWSKVIGPL-AEHYDVIVPDLRGFGDSEKPD----L 73 (293)
T ss_dssp EEEEC-SSCEEEEEE-----E----ECSSEEEEECCSSCCG--GGGHHHHHHH-HTTSEEEEECCTTSTTSCCCC----T
T ss_pred eEEEE-CCEEEEEEE-----E----CCCCeEEEECCCCCCH--HHHHHHHHHH-hcCCEEEEecCCcccCCcccc----c
Confidence 34444 566776431 1 2358899999965543 3355555555 558999999999998653211 0
Q ss_pred ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 569 FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 569 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
......+++++...+..+++. ...+++.++|+|+||.+++.++.++|++++++|+.+|.
T Consensus 74 ~~~~~~~~~~~a~~~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 132 (293)
T d1ehya_ 74 NDLSKYSLDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPI 132 (293)
T ss_dssp TCGGGGCHHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCS
T ss_pred cccccccchhhhhHHHhhhhh--cCccccccccccccccchhcccccCccccceeeeeecc
Confidence 111223456666655555544 23478999999999999999999999999999988875
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=7.5e-13 Score=131.81 Aligned_cols=201 Identities=14% Similarity=0.079 Sum_probs=116.7
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|.||++||..+.. ..|......| .+||.|+++|.||+|.+.. ....++.|+.+ .+.... .+
T Consensus 11 ~~~lvllHG~~~~~--~~~~~~~~~L-~~~~~vi~~D~~G~G~S~~---------~~~~~~~d~~~---~~~~~~---~~ 72 (256)
T d1m33a_ 11 NVHLVLLHGWGLNA--EVWRCIDEEL-SSHFTLHLVDLPGFGRSRG---------FGALSLADMAE---AVLQQA---PD 72 (256)
T ss_dssp SSEEEEECCTTCCG--GGGGGTHHHH-HTTSEEEEECCTTSTTCCS---------CCCCCHHHHHH---HHHTTS---CS
T ss_pred CCeEEEECCCCCCH--HHHHHHHHHH-hCCCEEEEEeCCCCCCccc---------ccccccccccc---cccccc---cc
Confidence 46788899965433 3355555555 4689999999999986532 22334455444 333332 47
Q ss_pred cEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCccchhhccCCCCCC------------------------------CCh
Q 004368 596 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP------------------------------LTT 645 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~------------------------------~~~ 645 (758)
++.++|+|+||.++..++.++|+.++++++..+.............. ...
T Consensus 73 ~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
T d1m33a_ 73 KAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETA 152 (256)
T ss_dssp SEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTH
T ss_pred ceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhccccch
Confidence 89999999999999999999999999888765432111000000000 000
Q ss_pred hhh----hc--cCCC-CCHH----HHHHHHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEE
Q 004368 646 AEW----EE--WGDP-WKEE----FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILL 714 (758)
Q Consensus 646 ~~~----~e--~g~p-~~~~----~~~~l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~ 714 (758)
... .+ ...+ ...+ .+..+...+....++++++| +||++|++|..+|+..+.++.+.+ .+.++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~p~~~~~~l~~~~----~~~~~~~ 227 (256)
T d1m33a_ 153 RQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMP-FLRLYGYLDGLVPRKVVPMLDKLW----PHSESYI 227 (256)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSC-EEEEEETTCSSSCGGGCC-CTTTC----TTCEEEE
T ss_pred hhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHhccCC-ccccccccCCCCCHHHHHHHHHHC----CCCEEEE
Confidence 000 00 0011 0111 12223334444556677888 999999999999988776655433 2446666
Q ss_pred EEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 715 FKCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 715 ~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
++ ++||......++.+.+. +.+||.
T Consensus 228 i~---~~gH~~~~e~p~~~~~~--l~~fl~ 252 (256)
T d1m33a_ 228 FA---KAAHAPFISHPAEFCHL--LVALKQ 252 (256)
T ss_dssp ET---TCCSCHHHHSHHHHHHH--HHHHHT
T ss_pred EC---CCCCchHHHCHHHHHHH--HHHHHH
Confidence 75 89997533333333332 445553
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.35 E-value=1.3e-11 Score=125.26 Aligned_cols=126 Identities=17% Similarity=0.112 Sum_probs=86.5
Q ss_pred EEEEeeCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhc
Q 004368 487 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 566 (758)
Q Consensus 487 ~~~~~~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~ 566 (758)
+.-++++.||.+|.....-+ ...|.||++||.++.... |.... .++.+||.|+++|.||.|.+...
T Consensus 12 ~~~~v~~~dG~~i~y~~~G~-------~~g~pvvllHG~~~~~~~--w~~~~-~~l~~~~~vi~~D~rG~G~S~~~---- 77 (313)
T d1wm1a_ 12 DSGWLDTGDGHRIYWELSGN-------PNGKPAVFIHGGPGGGIS--PHHRQ-LFDPERYKVLLFDQRGCGRSRPH---- 77 (313)
T ss_dssp EEEEEECSSSCEEEEEEEEC-------TTSEEEEEECCTTTCCCC--GGGGG-GSCTTTEEEEEECCTTSTTCBST----
T ss_pred cCCEEEeCCCcEEEEEEecC-------CCCCeEEEECCCCCcccc--hHHHH-HHhhcCCEEEEEeCCCccccccc----
Confidence 34456678999887653211 124668889997766544 33333 34567999999999999876431
Q ss_pred ccccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc
Q 004368 567 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 630 (758)
Q Consensus 567 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 630 (758)
.......+.++.+.+..+..+- ...++.++|+|+||.++..++..+|++++++++..+..
T Consensus 78 --~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~ 137 (313)
T d1wm1a_ 78 --ASLDNNTTWHLVADIERLREMA--GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFT 137 (313)
T ss_dssp --TCCTTCSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred --ccccccchhhHHHHHHhhhhcc--CCCcceeEeeecCCchhhHHHHHHhhhheeeeeccccc
Confidence 1222334455555555554442 34789999999999999999999999999998876644
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.26 E-value=2.4e-11 Score=119.72 Aligned_cols=103 Identities=16% Similarity=0.121 Sum_probs=71.3
Q ss_pred CCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCC
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 592 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 592 (758)
+.+.|+||++||..+.. ..|...+..|++.||.|+.+|+||+|....... ....+...+...+......
T Consensus 13 ~~~~P~ivllHG~~~~~--~~~~~~~~~L~~~g~~vi~~Dl~G~G~s~~~~~---------~~~~~~~~~~~~~~~~~~~ 81 (264)
T d1r3da_ 13 TARTPLVVLVHGLLGSG--ADWQPVLSHLARTQCAALTLDLPGHGTNPERHC---------DNFAEAVEMIEQTVQAHVT 81 (264)
T ss_dssp BTTBCEEEEECCTTCCG--GGGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCC
T ss_pred CCCCCeEEEeCCCCCCH--HHHHHHHHHHHhCCCEEEEEecccccccccccc---------cccchhhhhhhhccccccc
Confidence 35679999999966543 346677778888899999999999987643211 1112222333333333344
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEc
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 626 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 626 (758)
..+++.++|+|+||.++..++.++|+....++..
T Consensus 82 ~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~ 115 (264)
T d1r3da_ 82 SEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGA 115 (264)
T ss_dssp TTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEE
T ss_pred ccCceeeeeecchHHHHHHHHHhCchhccccccc
Confidence 5689999999999999999999999887766644
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.26 E-value=1.2e-10 Score=121.09 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=102.9
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc-ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++|+++....| ..|+++|+++|+..... ..+....++||||| .|++...+. .++.+++.
T Consensus 44 ~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~-----~~~~~~~~ 115 (360)
T d1k32a3 44 RIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF-----EIMTVDLE 115 (360)
T ss_dssp CEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTS-----EEEEEETT
T ss_pred CEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCcEEEeeCCCceEEeeeecccccccceecccc-----cccccccc
Confidence 4678999999999999987665 46999999999887652 23335668999999 676655432 57888887
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCC-------cceEEEEEeCCCCCceEEeeccccc-eeeEEeecCC
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK-------ITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGN 341 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~-------~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~ 341 (758)
++. ...++.... .....++|||||++|++..... ....++++|+.+++ ...++..... ....|+|||+
T Consensus 116 ~~~--~~~~~~~~~-~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~~~~~~~~~spdg~ 191 (360)
T d1k32a3 116 TGK--PTVIERSRE-AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK 191 (360)
T ss_dssp TCC--EEEEEECSS-SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred ccc--eeeeeeccc-ccccchhhccceeeeeeeccccccceeeccccceeeeccccCc-eeeecccccccccccccCCCC
Confidence 663 333433322 2233688999999999876432 23568889998875 5555443332 2345999999
Q ss_pred EEEEEEcCC
Q 004368 342 HFFITRRSD 350 (758)
Q Consensus 342 ~l~~~s~~~ 350 (758)
+|++.+.+.
T Consensus 192 ~l~~~s~~~ 200 (360)
T d1k32a3 192 NLYYLSYRS 200 (360)
T ss_dssp EEEEEESCC
T ss_pred EEEEEeCCC
Confidence 999988654
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.25 E-value=1.2e-13 Score=142.34 Aligned_cols=219 Identities=12% Similarity=0.027 Sum_probs=118.0
Q ss_pred CCCCEEEEecCCCccCCCC-----CCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHH
Q 004368 514 GSDPLLLYGYGSYEICNDP-----AFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK 588 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 588 (758)
++.| ||++||++..+..+ .+...++.++++||.|+.+|+||+|.++............. ++.+. +.
T Consensus 57 ~~~P-vvllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~~~~~~~~~~----~~~~~----l~ 127 (318)
T d1qlwa_ 57 KRYP-ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKLGK----APASS----LP 127 (318)
T ss_dssp CSSC-EEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHTTS----SCGGG----SC
T ss_pred CCCc-EEEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccccCCHHHHHH----HHHHH----HH
Confidence 4567 56689988765443 24456789999999999999999999876433211111111 11111 11
Q ss_pred cCCCCCCcEEEEEeChhHHHHHHHHhhCCCc-eeEEEEcCCccchhhccCCCCCCCChhhh----hccCC-------CCC
Q 004368 589 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL-FKAAVAAVPFVDVLTTMLDPTIPLTTAEW----EEWGD-------PWK 656 (758)
Q Consensus 589 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~-f~a~v~~~~~~d~~~~~~~~~~~~~~~~~----~e~g~-------p~~ 656 (758)
.-.....++++.|+|+||.++..++...+.. ...+++..++.+....... ........ ...+. ...
T Consensus 128 ~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (318)
T d1qlwa_ 128 DLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPT--PNPTVANLSKLAIKLDGTVLLSHSQSG 205 (318)
T ss_dssp CCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCS--SCHHHHHHHHHHHHHTSEEEEEEGGGT
T ss_pred HHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhh--hhhhHHHHHHHHhhhccccchhhhccc
Confidence 1122346777889999998776665544321 1111211111111111000 00000000 00000 000
Q ss_pred HHHHHH----------------HHhcCcccccCCCCCCeEEEeccCCCCCCCCh-----HHHHHHHHHHhcCCCCceEEE
Q 004368 657 EEFYFY----------------MKSYSPVDNVKAQNYPHILVTAGLNDPRVMYS-----EPAKFVAKLREMKTDDNILLF 715 (758)
Q Consensus 657 ~~~~~~----------------l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~-----~~~~~~~~L~~~~~~~~~~~~ 715 (758)
...+.. ....++......+++| +|++||++|.+||.+ ++..+++.|++++.+++++.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~Lii~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~~~~~~~l 284 (318)
T d1qlwa_ 206 IYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIP-VLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSL 284 (318)
T ss_dssp THHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGGTTSC-EEEEECSSCTTCTTTHHHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred chhhhhhhhhhhHHHHHHhhhcccccchhhhhhhccCC-EEEEecCcCcccChhhhHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 000000 0011344555556788 999999999999964 455788899999998888877
Q ss_pred Eec--CCCCCCCCCCh-HHHHHHHHHHHHHHHHh
Q 004368 716 KCE--LGAGHFSKSGR-FERLREAAFTYTFLMRA 746 (758)
Q Consensus 716 ~~~--~~~gH~~~~~~-~~~~~~~~~~~~fl~~~ 746 (758)
+.. .++||...... .+.+. ..+.+||.++
T Consensus 285 p~~gi~G~gH~~~~e~~~~~va--~~i~~wL~~~ 316 (318)
T d1qlwa_ 285 PALGVHGNSHMMMQDRNNLQVA--DLILDWIGRN 316 (318)
T ss_dssp GGGTCCCCCTTGGGSTTHHHHH--HHHHHHHHHT
T ss_pred cccccCCCcCccccCcCHHHHH--HHHHHHHHhc
Confidence 632 26779864322 23232 2368999886
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.22 E-value=1.3e-10 Score=120.82 Aligned_cols=182 Identities=12% Similarity=0.094 Sum_probs=118.6
Q ss_pred EEECC-CCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCC
Q 004368 196 FQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQS 273 (758)
Q Consensus 196 ~~~SP-DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~ 273 (758)
..||| ||++|||... | +|+|+|+++|+.++..-.+....++||||| .|++.+.+.. ..|+++++.++.
T Consensus 8 ~~fSP~dG~~~a~~~~--g----~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~- 77 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSR--G----QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGK- 77 (360)
T ss_dssp EEEEECGGGCEEEEET--T----EEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCC-
T ss_pred ccccCCCCCEEEEEEC--C----eEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCc-
Confidence 47999 9999999864 3 699999999988876444456779999999 6777776542 247888887762
Q ss_pred CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccce-eeEEeecCCEEEEEEcCC-
Q 004368 274 NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGV-DTAASHRGNHFFITRRSD- 350 (758)
Q Consensus 274 ~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~~-~~~~s~dg~~l~~~s~~~- 350 (758)
.. .+.... .....+.|||||++|++.... ..+++++++++. ...+.. ..... ...|+|||++|++.....
T Consensus 78 -~~-~~~~~~-~~v~~~~~spdg~~l~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~ 150 (360)
T d1k32a3 78 -AE-KFEENL-GNVFAMGVDRNGKFAVVANDR---FEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAYGFPLKH 150 (360)
T ss_dssp -EE-ECCCCC-CSEEEEEECTTSSEEEEEETT---SEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEEEEEECS
T ss_pred -EE-EeeCCC-ceEEeeeecccccccceeccc---cccccccccccc-eeeeeecccccccchhhccceeeeeeeccccc
Confidence 22 232222 223467899999999876554 357888998876 433333 22222 345999999999876543
Q ss_pred ----CCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEE
Q 004368 351 ----ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYER 395 (758)
Q Consensus 351 ----~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 395 (758)
+.....+..+++.+ +....+..+........++++++.|++...
T Consensus 151 ~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~s~ 198 (360)
T d1k32a3 151 GETDGYVMQAIHVYDMEG-RKIFAATTENSHDYAPAFDADSKNLYYLSY 198 (360)
T ss_dssp STTCSCCEEEEEEEETTT-TEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred cceeeccccceeeecccc-CceeeecccccccccccccCCCCEEEEEeC
Confidence 12345677788765 233334444333333345555667765543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.18 E-value=1.8e-09 Score=108.16 Aligned_cols=164 Identities=8% Similarity=0.033 Sum_probs=101.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCe-EEEEEEEECCCCceeeccccC--------cceeEEEecCC-eEEEEEeCCCC-CC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDE-IYTVYVIDIETGTPVGKPLVG--------VTASVEWAGNE-ALVYITMDEIL-RP 260 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e-~~~l~v~dl~~g~~~~~~~~~--------~~~~~~wspDg-~l~y~~~~~~~-~~ 260 (758)
....+.|||||++|||+....+.. ..+|+++++.+|+..+++... ....+.|+||| .|+|+...... ..
T Consensus 42 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 121 (281)
T d1k32a2 42 VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSM 121 (281)
T ss_dssp EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTC
T ss_pred cccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccc
Confidence 356889999999999998776654 568999999999987764322 13457899999 78876543211 11
Q ss_pred ceEEEEEcCCCC--------CC-------cEEEee----------------------e---------cCCceeeEEEEcC
Q 004368 261 DKAWLHKLEADQ--------SN-------DICLYH----------------------E---------KDDIYSLGLQASE 294 (758)
Q Consensus 261 ~~v~~~~l~~~~--------~~-------~~~v~~----------------------~---------~~~~~~~~~~~S~ 294 (758)
..++..+..++. .. ...++. . ........+.+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (281)
T d1k32a2 122 TCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG 201 (281)
T ss_dssp CEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET
T ss_pred eeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeec
Confidence 112222221110 00 000000 0 0000111233444
Q ss_pred CCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 295 SKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 295 Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
+ .+++.....+..+||++|+++++ .++|+.........|||||++|+|..+ ++||++|+++
T Consensus 202 ~--~~~~~~~~~~~~~l~~~d~~g~~-~~~lt~~~~~~~~~~SpDG~~I~f~~~------~~l~~~d~~~ 262 (281)
T d1k32a2 202 H--RIYFITDIDGFGQIYSTDLDGKD-LRKHTSFTDYYPRHLNTDGRRILFSKG------GSIYIFNPDT 262 (281)
T ss_dssp T--EEEEEECTTSSCEEEEEETTSCS-CEECCCCCSSCEEEEEESSSCEEEEET------TEEEEECTTT
T ss_pred c--ccceecccccccceEEEeCCCCc-eEEeecCCCcccccCcCCCCEEEEEeC------CEEEEEECCC
Confidence 4 55666666677899999999887 788876543333459999999998643 4699999976
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.16 E-value=1.6e-11 Score=124.95 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=81.7
Q ss_pred CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEc-CCccchhhccCCCCCCCChhhhhccCCC--CCHHHHHHHHhc
Q 004368 590 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA-VPFVDVLTTMLDPTIPLTTAEWEEWGDP--WKEEFYFYMKSY 666 (758)
Q Consensus 590 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~-~~~~d~~~~~~~~~~~~~~~~~~e~g~p--~~~~~~~~l~~~ 666 (758)
..+||+||+|+|+|+||+|+..++..+|++|+++++. ++...... ......... ..+.+ ..+.........
T Consensus 6 y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~ca----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 79 (318)
T d2d81a1 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCA----RNQYYTSCM--YNGYPSITTPTANMKSWSG 79 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTT----SSSCGGGGS--TTCCCCCHHHHHHHHHHBT
T ss_pred cCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhhh----cccchHHHh--hcCCCCCcChhHHHHHHhh
Confidence 3479999999999999999999999999999754332 22111010 011111000 00111 122222223333
Q ss_pred CcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCC
Q 004368 667 SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 667 sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
+.+..+.+...||+||+||.+|.+||+.++.+++++|++.+...+ +.|....++||++
T Consensus 80 ~~i~~~~~~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~~~~~~-v~yv~~~gagH~f 137 (318)
T d2d81a1 80 NQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSAN-VSYVTTTGAVHTF 137 (318)
T ss_dssp TTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGG-EEEEEETTCCSSE
T ss_pred cCCcchhccCCCCEEEEecCCCCCcCHHHHHHHHHHHHcCcCCCc-eEEEEeCCCCCCC
Confidence 444444444455699999999999999999999999998765544 3444556999976
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.14 E-value=2e-10 Score=115.43 Aligned_cols=118 Identities=7% Similarity=-0.028 Sum_probs=78.0
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 573 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~ 573 (758)
.||.+|+... . |+.|+||++||..+... .|...+..| .++|.|+++|.||.|.+...- ......
T Consensus 15 ~~g~~i~y~~-----~----G~g~~vvllHG~~~~~~--~~~~~~~~L-~~~~~vi~~Dl~G~G~S~~~~----~~~~~~ 78 (298)
T d1mj5a_ 15 IKGRRMAYID-----E----GTGDPILFQHGNPTSSY--LWRNIMPHC-AGLGRLIACDLIGMGDSDKLD----PSGPER 78 (298)
T ss_dssp ETTEEEEEEE-----E----SCSSEEEEECCTTCCGG--GGTTTGGGG-TTSSEEEEECCTTSTTSCCCS----SCSTTS
T ss_pred ECCEEEEEEE-----E----cCCCcEEEECCCCCCHH--HHHHHHHHH-hcCCEEEEEeCCCCCCCCCCc----cccccc
Confidence 3888887431 1 34578999999765433 355555454 467999999999988654310 011112
Q ss_pred ChHhHHHHHHHH-HHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 574 NTFTDFIACAEY-LIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 574 ~~~~D~~~~~~~-l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
....+..+.+.. +.+.. ..+++.++|+|+||.++..++.++|++++++++..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~ 133 (298)
T d1mj5a_ 79 YAYAEHRDYLDALWEALD--LGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAI 133 (298)
T ss_dssp SCHHHHHHHHHHHHHHTT--CTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEEC
T ss_pred cccchhhhhhcccccccc--ccccCeEEEecccchhHHHHHHHHHhhhheeeccccc
Confidence 223344444433 44433 3478999999999999999999999999998876553
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1.1e-09 Score=118.76 Aligned_cols=213 Identities=14% Similarity=0.112 Sum_probs=134.6
Q ss_pred eeEEECCCCCEEEEEE-eCC--------------------------C--CeEEEEEEEECCCCceeeccc--c-----C-
Q 004368 194 GCFQVSPDNKLVAYAE-DTK--------------------------G--DEIYTVYVIDIETGTPVGKPL--V-----G- 236 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~-~~~--------------------------G--~e~~~l~v~dl~~g~~~~~~~--~-----~- 236 (758)
.++.|||||++|||.. |.. | +....|+|+|++++....... . .
T Consensus 176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 255 (465)
T d1xfda1 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (465)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccc
Confidence 3568999999999985 211 1 113579999998876542211 1 1
Q ss_pred cceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCce----eeEEEEcCCCcEEEEE--ecCCcceE
Q 004368 237 VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIY----SLGLQASESKKFLFIA--SESKITRF 310 (758)
Q Consensus 237 ~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~----~~~~~~S~Dg~~l~~~--s~~~~~~~ 310 (758)
....+.|+||+++++...++......++..+..++. -..++.+....+ ...+.|++||+.++|. +...+...
T Consensus 256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~--~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ 333 (465)
T d1xfda1 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV--CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (465)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC--EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc--EEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCc
Confidence 134579999997776666665555678888888774 445555544433 1246799999977654 33345566
Q ss_pred EEEEeCCCC------CceEEeeccccceee--EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeec---CCCCce
Q 004368 311 VFYLDVSKP------EELRVLTPRVVGVDT--AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIP---HRESVK 379 (758)
Q Consensus 311 l~~~d~~~~------~~~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~---~~~~~~ 379 (758)
+|.+.+... ...+.|+.+.-.+.- .|+.+++.+||.++.++....+||++++++....+.+.. ......
T Consensus 334 ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~ 413 (465)
T d1xfda1 334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYF 413 (465)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCC
T ss_pred eEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEE
Confidence 777654211 125667765443332 388899999999987644567899999987433332321 111222
Q ss_pred eeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 380 LQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 380 ~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
-..|++++++++..++.-+.+.+.+++..
T Consensus 414 ~~~~S~~~~y~v~~~s~~~~P~~~~~~~~ 442 (465)
T d1xfda1 414 SASFSHSMDFFLLKCEGPGVPMVTVHNTT 442 (465)
T ss_dssp EEEECTTSSEEEEECCSSSSCCEEEEETT
T ss_pred EEEECCCCCEEEEEeecCCCCeEEEEECC
Confidence 33566667788877776666777777654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.99 E-value=8.6e-09 Score=111.89 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=73.3
Q ss_pred EEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCC--CCCcEEEEEeCCCCCcceeeec---
Q 004368 299 LFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDE--LFNSELLACPVDNTSETTVLIP--- 373 (758)
Q Consensus 299 l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~--~~~~~L~~~~~~~~~~~~~l~~--- 373 (758)
+++.+...+..+||+++.+++. .+.++.....+...++.+++.+||.++..+ ....+||++++++....+.+..
T Consensus 334 ~~~~s~~dg~~~ly~~~~~g~~-~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~ 412 (470)
T d2bgra1 334 YKIISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELN 412 (470)
T ss_dssp EEEEECTTSCEEEEEEETTCSC-CEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTS
T ss_pred EEEEeccCcCceeEEEeccCCc-eeeeccCCeeEEEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEeccccc
Confidence 3444555556778999988776 777776655555557888999999987542 1245799999986433332322
Q ss_pred -CCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCc
Q 004368 374 -HRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEP 413 (758)
Q Consensus 374 -~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~ 413 (758)
+.....-..|+++++++++.++....+.+.+++... |+.
T Consensus 413 ~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~-g~~ 452 (470)
T d2bgra1 413 PERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN-DKG 452 (470)
T ss_dssp TTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT-TEE
T ss_pred CCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCC-CCE
Confidence 222223345677788888888777767777777653 443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.96 E-value=3.4e-07 Score=91.51 Aligned_cols=242 Identities=11% Similarity=0.037 Sum_probs=139.3
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
...+++||||++|+.+...++ .|+++|+++++.+.. ........+.|++|+..+++.... ...+..+++.++
T Consensus 34 p~~va~spdG~~l~v~~~~~~----~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 106 (301)
T d1l0qa2 34 PMGAVISPDGTKVYVANAHSN----DVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA---SSTLSVIDTTSN 106 (301)
T ss_dssp EEEEEECTTSSEEEEEEGGGT----EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT---TTEEEEEETTTT
T ss_pred ceEEEEeCCCCEEEEEECCCC----EEEEEECCCCceeeeeeccccccccccccccccccccccc---cceeeecccccc
Confidence 346799999999976654443 699999999987653 222234568999999433444322 234666677655
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce-eeEEeecCCEEEEEEcCC
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSD 350 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~ 350 (758)
+....+... .....+.++|||+++++..... ..+++.+..+.. .....+..... ...++++++.+++.....
T Consensus 107 --~~~~~~~~~--~~~~~~~~~~dg~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (301)
T d1l0qa2 107 --TVAGTVKTG--KSPLGLALSPDGKKLYVTNNGD--KTVSVINTVTKA-VINTVSVGRSPKGIAVTPDGTKVYVANFDS 179 (301)
T ss_dssp --EEEEEEECS--SSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTE-EEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred --eeeeecccc--ccceEEEeecCCCeeeeeeccc--cceeeeeccccc-eeeecccCCCceEEEeeccccceeeecccc
Confidence 222222222 2234567999999988765443 346677777765 33322222222 234889999888776543
Q ss_pred CCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCccc
Q 004368 351 ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVY 430 (758)
Q Consensus 351 ~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~ 430 (758)
..+...+... ..............-..+..+++.+++.........++++++.. ++.+ ..+....
T Consensus 180 ----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t-~~~~------~~~~~~~--- 244 (301)
T d1l0qa2 180 ----MSISVIDTVT-NSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-NKIT------ARIPVGP--- 244 (301)
T ss_dssp ----TEEEEEETTT-TEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT-TEEE------EEEECCS---
T ss_pred ----cccccccccc-eeeeecccccCCcceeeccccccccccccccceeeeeeeeecCC-CeEE------EEEcCCC---
Confidence 3444555443 12222232222212223444566777766655556788898763 3221 1122111
Q ss_pred ccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 431 SIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 431 ~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.+.++.+++|++.++++-+ .-.+|..+|+++++
T Consensus 245 ~~~~va~spdg~~l~va~~---~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 245 DPAGIAVTPDGKKVYVALS---FCNTVSVIDTATNT 277 (301)
T ss_dssp SEEEEEECTTSSEEEEEET---TTTEEEEEETTTTE
T ss_pred CEEEEEEeCCCCEEEEEEC---CCCeEEEEECCCCe
Confidence 1223556788887755432 23479999999987
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.93 E-value=4e-09 Score=108.66 Aligned_cols=226 Identities=18% Similarity=0.196 Sum_probs=131.5
Q ss_pred CCCCeEEE-EEEEeeccccccC-CCCCEEEEecCCCccCCC------CCCChHH----HHHHHcCcEEEEEecCCCCC--
Q 004368 493 ASDGTQIP-ICIVYRKNLVKLD-GSDPLLLYGYGSYEICND------PAFNSSR----LSLLDRGFIFAIAQIRGGGE-- 558 (758)
Q Consensus 493 s~dG~~i~-~~l~~p~~~~~~~-~~~P~vl~~hGg~~~~~~------~~~~~~~----~~l~~~G~~v~~~~~RG~g~-- 558 (758)
...|..|+ +.|.|..-- .++ .+.++||++|+-.|.+.. ++|-... ..+=...|-|+++|+-|++.
T Consensus 15 l~~G~~l~~~~laY~t~G-~ln~~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~~gS 93 (357)
T d2b61a1 15 LMLGGKLSYINVAYQTYG-TLNDEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGT 93 (357)
T ss_dssp CTTSCEECSEEEEEEEES-CCCTTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSS
T ss_pred cCCCCccCCceEEEEeec-ccCCCCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCcccc
Confidence 34555554 445554321 122 346899999984443221 1221111 23333569999999998653
Q ss_pred CchhHHhc--cc---ccCCcChHhHHHHHHHHHHHcCCCCCCcE-EEEEeChhHHHHHHHHhhCCCceeEEEEcCCcc--
Q 004368 559 LGRQWYEN--GK---FLKKKNTFTDFIACAEYLIKNCYCTKEKL-CIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV-- 630 (758)
Q Consensus 559 ~G~~~~~~--~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~-- 630 (758)
.|..-... ++ ...-..++.|.+.+-..|.++= .-+|| +++|+||||+.++..+.++||.++.+|+.++-.
T Consensus 94 s~p~s~~p~tg~~~g~~FP~iti~D~v~aq~~Ll~~L--GI~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~~a~~ 171 (357)
T d2b61a1 94 TGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHL--GISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYF 171 (357)
T ss_dssp SCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHT--TCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSC
T ss_pred CCcCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHh--CcceEEEEecccHHHHHHHHHHHhhhHHHhhhccccccccc
Confidence 12111000 00 1122467899999988887663 33677 888999999999999999999999887776521
Q ss_pred chhh----------ccCCC----------CCCC---------------Chhhh-hccCCC--------------------
Q 004368 631 DVLT----------TMLDP----------TIPL---------------TTAEW-EEWGDP-------------------- 654 (758)
Q Consensus 631 d~~~----------~~~~~----------~~~~---------------~~~~~-~e~g~p-------------------- 654 (758)
.... ...++ ..|. ....+ ..|+..
T Consensus 172 s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~~~~~vesyL~~ 251 (357)
T d2b61a1 172 SAEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSY 251 (357)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCCCCCCCcccCCCchhHHHHHHHHHHhhccCHHHHHHHhccccccccccccchhhHHHHHHH
Confidence 1000 00111 1110 00000 011110
Q ss_pred --------CCHHHHHHH----HhcCccc-------ccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEE
Q 004368 655 --------WKEEFYFYM----KSYSPVD-------NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 715 (758)
Q Consensus 655 --------~~~~~~~~l----~~~sp~~-------~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 715 (758)
-|+..|-+| ..+++-. -+++++.| +|++....|-..|+++.++.++.|...++.++++.+
T Consensus 252 ~g~kf~~rfDan~yl~l~~a~~~~D~~~~~~~l~~aL~~I~a~-vLvi~~~sD~lFpp~~~~~~a~~l~~~~~~v~~~~I 330 (357)
T d2b61a1 252 QGKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKAR-YTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEF 330 (357)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSE-EEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHhhCCHHHHHHHHHHhhhcccccccccHHHHHhhcCCC-EEEEEeCCccccCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 122222221 1122211 14667887 999999999999999999999999999888777766
Q ss_pred EecCCCCCC
Q 004368 716 KCELGAGHF 724 (758)
Q Consensus 716 ~~~~~~gH~ 724 (758)
+ ...||-
T Consensus 331 ~--S~~GHd 337 (357)
T d2b61a1 331 P--SDYGHD 337 (357)
T ss_dssp C--CTTGGG
T ss_pred C--CCCCcc
Confidence 6 467884
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=98.92 E-value=1.4e-08 Score=104.80 Aligned_cols=245 Identities=16% Similarity=0.193 Sum_probs=139.0
Q ss_pred CCCCeEEE-EEEEeeccccccC-CCCCEEEEecCCCccCCC----------CCCCh-H---HHHHHHcCcEEEEEecCCC
Q 004368 493 ASDGTQIP-ICIVYRKNLVKLD-GSDPLLLYGYGSYEICND----------PAFNS-S---RLSLLDRGFIFAIAQIRGG 556 (758)
Q Consensus 493 s~dG~~i~-~~l~~p~~~~~~~-~~~P~vl~~hGg~~~~~~----------~~~~~-~---~~~l~~~G~~v~~~~~RG~ 556 (758)
...|..|+ +.|.|..-- .++ .+.++||++|+-.|.+.. ++|-. . -..+-..-|-|+++|.-|+
T Consensus 18 le~G~~l~~~~l~Y~t~G-~ln~~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~ 96 (362)
T d2pl5a1 18 LNNGSVLSPVVIAYETYG-TLSSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGG 96 (362)
T ss_dssp CTTSCEESSEEEEEEEEE-CCCTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTC
T ss_pred cCCCCCcCCceEEEEeee-ccCCCCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccC
Confidence 34566654 555554321 121 346899999985444211 22211 1 1233345699999999987
Q ss_pred CCC--chhHHhccc-----ccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCCc
Q 004368 557 GEL--GRQWYENGK-----FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 629 (758)
Q Consensus 557 g~~--G~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 629 (758)
+.. |..-..... ...-..++.|++++-..|.+.=.+ ..--+|+|+||||+.++..+.++|+.++.+|..++-
T Consensus 97 ~~~ss~~~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI-~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~s 175 (362)
T d2pl5a1 97 CKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGI-EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMAST 175 (362)
T ss_dssp SSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTC-SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCC
T ss_pred cccccCccccccccccccCcCCccchhHHHHHHHHHHHHHhCc-CeeEEEeehhHHHHHHHHHHHhCchHhhhhcccccc
Confidence 532 211000000 011235789988887777765333 233458899999999999999999999988877652
Q ss_pred cc----------hhhc--cCCC---------CCCC---------------Ch-----------------------hhh-h
Q 004368 630 VD----------VLTT--MLDP---------TIPL---------------TT-----------------------AEW-E 649 (758)
Q Consensus 630 ~d----------~~~~--~~~~---------~~~~---------------~~-----------------------~~~-~ 649 (758)
.- ..+. ..++ ..|. .. ..| .
T Consensus 176 a~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~~~~~~~~~ve~yl~ 255 (362)
T d2pl5a1 176 AEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLI 255 (362)
T ss_dssp SBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGG
T ss_pred cccCHHHHHHHHHHHHHHhcCCccccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccccccchhHHHHHHHH
Confidence 11 0000 0010 0110 00 000 0
Q ss_pred ccCCC----CCHHHHHHH----HhcCcccc------cCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEE
Q 004368 650 EWGDP----WKEEFYFYM----KSYSPVDN------VKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 715 (758)
Q Consensus 650 e~g~p----~~~~~~~~l----~~~sp~~~------i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 715 (758)
..|.. .|+..|-+| ..+++-.+ +++++.| +|++..+.|-..|+++.+++++.|..++..++++.+
T Consensus 256 ~~g~k~~~rfDan~yl~l~~a~~~~Di~~~~~l~~aL~~I~Ak-vLvi~~~sD~lFpp~~~~~~a~~l~~a~~~v~~~eI 334 (362)
T d2pl5a1 256 YQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCR-FLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVEL 334 (362)
T ss_dssp STTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSE-EEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHhcCCHHHHHHHHhhhhcccccccccHHHHHhhCCCC-EEEEEeCcccCcCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 01111 233333222 22222111 5677887 999999999999999999999999999988766655
Q ss_pred EecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 004368 716 KCELGAGHFSKSGRFERLREAAFTYTFLM 744 (758)
Q Consensus 716 ~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 744 (758)
+ ...||-..--....+.+. +-+||.
T Consensus 335 ~--S~~GHdaFL~e~~~~~~~--I~~FL~ 359 (362)
T d2pl5a1 335 Q--SGEGHDSFLLKNPKQIEI--LKGFLE 359 (362)
T ss_dssp C--CCBSSGGGGSCCHHHHHH--HHHHHH
T ss_pred C--CCCCcchhccCHHHHHHH--HHHHHc
Confidence 5 578995432222334332 345664
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.90 E-value=1.9e-07 Score=95.07 Aligned_cols=246 Identities=10% Similarity=0.005 Sum_probs=135.6
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
.++++|||+.|||.. |+ .++++|+++++.... .- .+....++|+|||.++.+...+ ..|.++++.+..
T Consensus 22 ~~a~~~~g~~l~~~~---~~---~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~d----g~i~iwd~~~~~ 91 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCN---GT---SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH----GNVRIWDTTQTT 91 (311)
T ss_dssp CCEECTTSSEEEEEE---TT---EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEESSSTT
T ss_pred EEEEcCCCCEEEEEe---CC---EEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccC----ceEeeeeeeccc
Confidence 357899999999975 32 488999998876543 11 2336678999999544554432 247888887764
Q ss_pred CCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEEcCCC
Q 004368 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRRSDE 351 (758)
Q Consensus 273 ~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~ 351 (758)
......+..... ....+.|+|||++|+..+.... ..+.++++++++....+......+.. .|+|+|+.+++....+
T Consensus 92 ~~~~~~~~~~~~-~v~~v~~s~d~~~l~~~~~~~~-~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d- 168 (311)
T d1nr0a1 92 HILKTTIPVFSG-PVKDISWDSESKRIAAVGEGRE-RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD- 168 (311)
T ss_dssp CCEEEEEECSSS-CEEEEEECTTSCEEEEEECCSS-CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT-
T ss_pred cccccccccccC-cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccceeeecccccc-
Confidence 322333433322 3346889999999887654332 23445566655423334333333333 3899998765554443
Q ss_pred CCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCccc
Q 004368 352 LFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVY 430 (758)
Q Consensus 352 ~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~ 430 (758)
+.|...|+.+. ........ ....+..+.+..+ .+++....++. +.+|++.. +.....+... .........
T Consensus 169 ---~~i~i~d~~~~-~~~~~~~~-~~~~i~~v~~~p~~~~l~~~~~d~~--v~~~d~~~-~~~~~~~~~~-~~~~~~h~~ 239 (311)
T d1nr0a1 169 ---NTVAIFEGPPF-KFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGT--IVLYNGVD-GTKTGVFEDD-SLKNVAHSG 239 (311)
T ss_dssp ---SCEEEEETTTB-EEEEEECC-CSSCEEEEEECTTSSEEEEEETTSC--EEEEETTT-CCEEEECBCT-TSSSCSSSS
T ss_pred ---ccccccccccc-cccccccc-ccccccccccCcccccccccccccc--cccccccc-cccccccccc-ccccccccc
Confidence 35777787652 22222222 2224556666543 33344555554 67888764 2211111100 001111111
Q ss_pred ccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 431 SIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 431 ~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.|..+.++++++.++ +-+ . -..++.+|..+++
T Consensus 240 ~V~~~~~s~~~~~l~-tgs-~--Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 240 SVFGLTWSPDGTKIA-SAS-A--DKTIKIWNVATLK 271 (311)
T ss_dssp CEEEEEECTTSSEEE-EEE-T--TSEEEEEETTTTE
T ss_pred cccccccCCCCCEEE-EEe-C--CCeEEEEECCCCc
Confidence 233345566776553 332 2 2368899998887
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.88 E-value=4.2e-07 Score=94.39 Aligned_cols=161 Identities=11% Similarity=-0.027 Sum_probs=93.5
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC-cceeEEEecCC-eEEEEEeCCC-----CCCceEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNE-ALVYITMDEI-----LRPDKAWL 265 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-~~~~~~wspDg-~l~y~~~~~~-----~~~~~v~~ 265 (758)
+....+||||+++++......+...+|+|+|.++|+.+.. +.. ....++||||| .+++...... .+...|..
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v 101 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-VNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-EeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEE
Confidence 4456799999999777554444457899999999998763 332 23468999999 6665544321 22345778
Q ss_pred EEcCCCCCCcEEEeeecC-Cce-----eeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeec
Q 004368 266 HKLEADQSNDICLYHEKD-DIY-----SLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHR 339 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~-~~~-----~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~d 339 (758)
+++.+++. +.....+. ... ...+.+++||+.+++..... ...+.+++..+.+ ...... ......++++
T Consensus 102 ~D~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-~~~~~~~~~~~~~-~~~~~~--~~~~~~~s~~ 175 (373)
T d2madh_ 102 FDPVTFLP--IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA-GPAVGLVVQGGSS-DDQLLS--SPTCYHIHPG 175 (373)
T ss_pred EECCCCcE--EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC-CCceEEeeccCCe-EEEEec--cceeEEEecC
Confidence 88877632 11111111 111 12357899999987765432 2344555665543 211111 1123347888
Q ss_pred CCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 340 GNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 340 g~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
|+.+++....+ ..+.+++..+
T Consensus 176 g~~~~v~~~~d----g~~~~~~~~~ 196 (373)
T d2madh_ 176 APSTFYLLCAQ----GGLAKTDHAG 196 (373)
T ss_pred CCcEEEEEcCC----CeEEEEEcCC
Confidence 88776655443 3455555443
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=2.5e-09 Score=105.50 Aligned_cols=98 Identities=15% Similarity=0.216 Sum_probs=71.5
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHc--CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDR--GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
.| ||++||..+.. ..|......|.+. ||.|+.+|.||+|..... ...+++++...+..+.++. .
T Consensus 3 ~P-vvllHG~~~~~--~~~~~~~~~l~~~~~~~~v~~~d~~G~g~S~~~---------~~~~~~~~~~~l~~~l~~l--~ 68 (268)
T d1pjaa_ 3 KP-VIVVHGLFDSS--YSFRHLLEYINETHPGTVVTVLDLFDGRESLRP---------LWEQVQGFREAVVPIMAKA--P 68 (268)
T ss_dssp CC-EEEECCTTCCG--GGGHHHHHHHHHHSTTCCEEECCSSCSGGGGSC---------HHHHHHHHHHHHHHHHHHC--T
T ss_pred CC-EEEECCCCCCH--HHHHHHHHHHHhhCCCeEEEEeCCCCCCCCCCc---------cccCHHHHHHHHHHHHhcc--C
Confidence 35 55689965543 3466667777764 899999999998865321 1134566666666555543 3
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCC-ceeEEEEcCC
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAVP 628 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~~ 628 (758)
+++.++|||+||.++..++.++|+ +++.+|+.++
T Consensus 69 -~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~ 103 (268)
T d1pjaa_ 69 -QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 103 (268)
T ss_dssp -TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESC
T ss_pred -CeEEEEccccHHHHHHHHHHHCCccccceEEEECC
Confidence 799999999999999999999998 5888877765
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=98.82 E-value=1.4e-08 Score=105.27 Aligned_cols=135 Identities=10% Similarity=0.111 Sum_probs=86.5
Q ss_pred eeCCCCeEEE-EEEEeecccccc-CCCCCEEEEecCCCccCCCCCCChHH----HHHHHcCcEEEEEecCCCCC--Cchh
Q 004368 491 ASASDGTQIP-ICIVYRKNLVKL-DGSDPLLLYGYGSYEICNDPAFNSSR----LSLLDRGFIFAIAQIRGGGE--LGRQ 562 (758)
Q Consensus 491 ~~s~dG~~i~-~~l~~p~~~~~~-~~~~P~vl~~hGg~~~~~~~~~~~~~----~~l~~~G~~v~~~~~RG~g~--~G~~ 562 (758)
++...|..|+ +.|.|..-- .+ ..+.++||++|+-.+.+...+|-... ..+=...|-|+++|+-|++. .|..
T Consensus 18 F~le~G~~l~~~~laY~t~G-~ln~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~~gst~p~ 96 (376)
T d2vata1 18 FTLESGVILRDVPVAYKSWG-RMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSAGPC 96 (376)
T ss_dssp EECTTSCEEEEEEEEEEEES-CCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSSSTT
T ss_pred EEeCCCCCcCCceEEEEeec-ccCCCCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCCcCCCCCC
Confidence 5556777774 666665322 22 24578999999866655433332211 23434579999999998752 1211
Q ss_pred HHh---ccc----ccCCcChHhHHHHHHHHHHHcCCCCCCcE-EEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 563 WYE---NGK----FLKKKNTFTDFIACAEYLIKNCYCTKEKL-CIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 563 ~~~---~~~----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
-.. .+. ...-..++.|.+.+-..|.+.=.+ ++| +|+|+||||+.++..+.++|++++.+|..+.
T Consensus 97 s~~p~~~~~~~yg~~FP~~ti~D~v~aq~~ll~~LGI--~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~ 168 (376)
T d2vata1 97 SPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRLGV--RQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIAT 168 (376)
T ss_dssp SBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHHHTC--CCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESC
T ss_pred CCCcccccCCcccccCCcchhHHHHHHHHHHHHHhCc--ceEEEeecccHHHHHHHHHHHhchHHHhhhccccc
Confidence 100 000 011245789999987766665222 566 7999999999999999999999988777654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.79 E-value=3.6e-07 Score=94.03 Aligned_cols=122 Identities=15% Similarity=0.023 Sum_probs=73.7
Q ss_pred EECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCCC-----CCCceEEEEEcCC
Q 004368 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEI-----LRPDKAWLHKLEA 270 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~~-----~~~~~v~~~~l~~ 270 (758)
.+||||+++++.....+....+++|+|+++|+.+.....+....++||||| .||....... .+...|+++++.+
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t 87 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 87 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence 569999999555444444467899999999988763222334468999999 5655432111 1123577888877
Q ss_pred CCCCcEEEeeecCCce-----eeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 271 DQSNDICLYHEKDDIY-----SLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~-----~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
+.....+... ..... ...+.+|+||+++++.... ....+++++..+++
T Consensus 88 ~~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~~~v~~~~-~~~~~~~~~~~~~~ 140 (355)
T d2bbkh_ 88 LLPTADIELP-DAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDLEGKA 140 (355)
T ss_dssp CCEEEEEEET-TCCCCCBSCCGGGEEECTTSSEEEEEECS-SSCEEEEEETTTTE
T ss_pred CCEEEEEecC-CcceeecCCCCceEEEecCCCeeEEecCC-CCceeeeeecCCCc
Confidence 6322211111 11111 1246799999999875443 33456777777664
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=98.79 E-value=1.4e-08 Score=107.74 Aligned_cols=120 Identities=15% Similarity=0.085 Sum_probs=85.7
Q ss_pred CCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcC------cEEEEEecCCCCCCchhHHhcc
Q 004368 494 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRG------FIFAIAQIRGGGELGRQWYENG 567 (758)
Q Consensus 494 ~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G------~~v~~~~~RG~g~~G~~~~~~~ 567 (758)
-||.+|+..-+... .+..|.||++||-+++... |...+..|++.| |.|+++|+||.|.+...
T Consensus 89 i~G~~iHf~h~~~~-----~~~~~pLlLlHG~P~s~~~--w~~vi~~La~~g~~~~~~f~VIaPDLpG~G~S~~P----- 156 (394)
T d1qo7a_ 89 IEGLTIHFAALFSE-----REDAVPIALLHGWPGSFVE--FYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGP----- 156 (394)
T ss_dssp ETTEEEEEEEECCS-----CTTCEEEEEECCSSCCGGG--GHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCC-----
T ss_pred ECCEEEEEEEEecc-----CCCCCEEEEeccccccHHH--HHHHHHhhccccCCcccceeeecccccccCCCCCC-----
Confidence 48988876433221 2456788999997776543 677788899988 99999999998876431
Q ss_pred cccCCcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 568 KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 568 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
......++.++.+.+..|.+.- ..++..++|+|+||.++..++..+|+..+++++...
T Consensus 157 -~~~~~y~~~~~a~~~~~l~~~l--g~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~ 214 (394)
T d1qo7a_ 157 -PLDKDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLC 214 (394)
T ss_dssp -CSSSCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred -CCCCccCHHHHHHHHHHHHhhc--cCcceEEEEecCchhHHHHHHHHhhccccceeEeee
Confidence 1112244566666666665542 236888999999999999999999998887776643
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=98.77 E-value=1.6e-08 Score=94.33 Aligned_cols=154 Identities=16% Similarity=0.070 Sum_probs=97.9
Q ss_pred CCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCCCC
Q 004368 516 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 595 (758)
Q Consensus 516 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 595 (758)
.|+ |++||..+. ...|......|.++||.++.++.+|.+.....-. ...+++.+.++.+.++- ..+
T Consensus 3 ~PV-v~vHG~~~~--~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~i~~~~~~~--~~~ 68 (179)
T d1ispa_ 3 NPV-VMVHGIGGA--SFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNY---------NNGPVLSRFVQKVLDET--GAK 68 (179)
T ss_dssp CCE-EEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEECCCSCTTCCHH---------HHHHHHHHHHHHHHHHH--CCS
T ss_pred CCE-EEECCCCCC--HHHHHHHHHHHHHcCCeEEEEecCCccccccccc---------hhhhhHHHHHHHHHHhc--CCc
Confidence 465 568995543 3346777788999999999999988765432111 12355666666665542 347
Q ss_pred cEEEEEeChhHHHHHHHHhhC--CCceeEEEEcCCccchhhccCCCCCCCChhhhhccCCCCCHHHHHHHHhcCcccccC
Q 004368 596 KLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVK 673 (758)
Q Consensus 596 ~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sp~~~i~ 673 (758)
++.++|||+||.++..++.++ |++++.+|+.++....... ..++ +. ..
T Consensus 69 ~v~lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~---~~l~---------~~------------------~~ 118 (179)
T d1ispa_ 69 KVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG---KALP---------GT------------------DP 118 (179)
T ss_dssp CEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS---BCCC---------CS------------------CT
T ss_pred eEEEEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchh---hhcC---------Cc------------------cc
Confidence 899999999999999888776 5788888877653221100 0000 00 01
Q ss_pred CCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC
Q 004368 674 AQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK 726 (758)
Q Consensus 674 ~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~ 726 (758)
....| ++.++|..|..|++..+. + . ..+.+.++ +.+|...
T Consensus 119 ~~~~~-~~~i~~~~D~~v~~~~~~-----l--~--~~~~~~~~---~~~H~~l 158 (179)
T d1ispa_ 119 NQKIL-YTSIYSSADMIVMNYLSR-----L--D--GARNVQIH---GVGHIGL 158 (179)
T ss_dssp TCCCE-EEEEEETTCSSSCHHHHC-----C--B--TSEEEEES---SCCTGGG
T ss_pred ccCce-EEEEEecCCcccCchhhc-----C--C--CceEEEEC---CCCchhh
Confidence 12355 889999999999975431 1 1 23445555 8899643
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=6.9e-06 Score=83.82 Aligned_cols=236 Identities=11% Similarity=0.055 Sum_probs=130.8
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec----cc---cCcceeEEEecCCeEEEEEeCCCCCCceEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK----PL---VGVTASVEWAGNEALVYITMDEILRPDKAW 264 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~----~~---~~~~~~~~wspDg~l~y~~~~~~~~~~~v~ 264 (758)
.+..++|||||++||-.. +| .|+|||+.++..... .. .+....++|+|||.++++...+ ..|.
T Consensus 53 ~V~~v~fs~~g~~latg~--dg----~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d----g~i~ 122 (337)
T d1gxra_ 53 VVCAVTISNPTRHVYTGG--KG----CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA----STLS 122 (337)
T ss_dssp CCCEEEECSSSSEEEEEC--BS----EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS----SEEE
T ss_pred cEEEEEECCCCCEEEEEE--CC----EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc----cccc
Confidence 366789999999998542 22 599999987653321 11 1225668999999544454432 2477
Q ss_pred EEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEe-ecccccee-eEEeecCCE
Q 004368 265 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL-TPRVVGVD-TAASHRGNH 342 (758)
Q Consensus 265 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l-~~~~~~~~-~~~s~dg~~ 342 (758)
++++.....+-...+.... .....+.++||+.+++..+.+ ..+.++++.+++ .... ......+. ..+++++..
T Consensus 123 iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d---~~i~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~ 197 (337)
T d1gxra_ 123 IWDLAAPTPRIKAELTSSA-PACYALAISPDSKVCFSCCSD---GNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp EEECCCC--EEEEEEECSS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSE
T ss_pred ccccccccccccccccccc-ccccccccccccccccccccc---cccccccccccc-ccccccccccccccccccccccc
Confidence 7787655322122222222 223356799999988765433 347788888765 3322 22222332 248899988
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC--CEEEEEEEeCCeeEEEEEEcCCCCCccccccCC
Q 004368 343 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGG 420 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~ 420 (758)
++..+.+ ..+..+++.+. ..-...... ..+..+.+.. +.+ ++...++. +.++++.. ++
T Consensus 198 ~~~~~~d-----~~v~i~d~~~~-~~~~~~~~~--~~i~~l~~~~~~~~l-~~~~~d~~--i~i~d~~~-~~-------- 257 (337)
T d1gxra_ 198 LWTGGLD-----NTVRSWDLREG-RQLQQHDFT--SQIFSLGYCPTGEWL-AVGMESSN--VEVLHVNK-PD-------- 257 (337)
T ss_dssp EEEEETT-----SEEEEEETTTT-EEEEEEECS--SCEEEEEECTTSSEE-EEEETTSC--EEEEETTS-SC--------
T ss_pred ccccccc-----ccccccccccc-eeecccccc--cceEEEEEccccccc-ceeccccc--cccccccc-cc--------
Confidence 7766543 45777787652 211222222 2344555543 344 44555554 67888873 22
Q ss_pred ceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 421 KSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 421 ~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
..........+..+.++++++.++ +.+. -..+..||..+++.
T Consensus 258 -~~~~~~~~~~i~~v~~s~~g~~l~-s~s~---Dg~i~iwd~~~~~~ 299 (337)
T d1gxra_ 258 -KYQLHLHESCVLSLKFAYCGKWFV-STGK---DNLLNAWRTPYGAS 299 (337)
T ss_dssp -EEEECCCSSCEEEEEECTTSSEEE-EEET---TSEEEEEETTTCCE
T ss_pred -cccccccccccceEEECCCCCEEE-EEeC---CCeEEEEECCCCCE
Confidence 111111112233345566776553 3322 25788899888773
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.62 E-value=2.2e-06 Score=85.67 Aligned_cols=239 Identities=15% Similarity=0.104 Sum_probs=126.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc---cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---VGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~---~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+..++|||||++||-.. .+| .|++||+++|+...... ......++|+|||.++....+. .+.++++
T Consensus 14 ~V~~l~~s~dg~~l~s~s-~Dg----~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~-----~v~~~~~ 83 (299)
T d1nr0a2 14 AITALSSSADGKTLFSAD-AEG----HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDD-----HLKVVPA 83 (299)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTT-----EEEEECS
T ss_pred CcEEEEECCCCCEEEEEc-CCC----eEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeeccccee-----eEEEecc
Confidence 477889999999987443 333 59999999998765321 1235678999999766555443 3666665
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEc
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRR 348 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~ 348 (758)
.....................+.+++||+.++..... .+.+++... ...+..........++|+++.|+..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~----~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~ 156 (299)
T d1nr0a2 84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK----HIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGGQ 156 (299)
T ss_dssp SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS----EEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred CCccccccccccccccccccccccccccccccccccc----ccccccccc---ccccccccccccccccccccccccccc
Confidence 4432111111111122223467899999987664432 355555432 222222222223348899987776554
Q ss_pred CCCCCCcEEEEEeCCCCCccee-eecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeecc
Q 004368 349 SDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFI 426 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p 426 (758)
. ..|...|+.+...... ...+.. .+..+.+..+ ..++....++. +++|++.. +.....+ ..+.
T Consensus 157 d-----g~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~--i~~~~~~~-~~~~~~~-----~~~~ 221 (299)
T d1nr0a2 157 D-----SKVHVYKLSGASVSEVKTIVHPA--EITSVAFSNNGAFLVATDQSRK--VIPYSVAN-NFELAHT-----NSWT 221 (299)
T ss_dssp T-----SEEEEEEEETTEEEEEEEEECSS--CEEEEEECTTSSEEEEEETTSC--EEEEEGGG-TTEESCC-----CCCC
T ss_pred c-----ccccccccccccccccccccccc--cccccccccccccccccccccc--cccccccc-ccccccc-----cccc
Confidence 3 3566667654222221 233332 3455666543 23334455554 77888763 2211100 1111
Q ss_pred CcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 427 DPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 427 ~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.+...+..+.++++++.++. .+ .. ..++.||+.++.
T Consensus 222 ~h~~~v~~l~~s~~~~~l~s-gs-~d--g~i~iwd~~~~~ 257 (299)
T d1nr0a2 222 FHTAKVACVSWSPDNVRLAT-GS-LD--NSVIVWNMNKPS 257 (299)
T ss_dssp CCSSCEEEEEECTTSSEEEE-EE-TT--SCEEEEETTCTT
T ss_pred ccccccccccccccccceEE-Ec-CC--CEEEEEECCCCC
Confidence 11112333445666665532 22 22 358888887654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=7.5e-06 Score=82.69 Aligned_cols=257 Identities=15% Similarity=0.093 Sum_probs=122.3
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCc--eeec---cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT--PVGK---PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~--~~~~---~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~ 267 (758)
+..++|||||++|+.+...++ .|.+++++++. .... ........++|+|||+.+|+..... ..+....
T Consensus 39 v~~la~spDG~~L~v~~~~d~----~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~---~~v~~~~ 111 (333)
T d1ri6a_ 39 VQPMVVSPDKRYLYVGVRPEF----RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA---GNVSVTR 111 (333)
T ss_dssp CCCEEECTTSSEEEEEETTTT----EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT---TEEEEEE
T ss_pred EeEEEEeCCCCEEEEEECCCC----eEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCC---Cceeeec
Confidence 457799999999965544333 46666665543 2211 1222244589999995445554221 2355444
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceE-Ee---eccccc---eeeEEeecC
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR-VL---TPRVVG---VDTAASHRG 340 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~-~l---~~~~~~---~~~~~s~dg 340 (758)
............ ........++.++||+++++....... .+++++........ .. .....+ ....+++++
T Consensus 112 ~~~~~~~~~~~~-~~~~~~~~~v~~s~d~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~ 188 (333)
T d1ri6a_ 112 LEDGLPVGVVDV-VEGLDGCHSANISPDNRTLWVPALKQD--RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 188 (333)
T ss_dssp EETTEEEEEEEE-ECCCTTBCCCEECTTSSEEEEEEGGGT--EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred cccccceecccc-cCCCccceEEEeeecceeeeccccccc--eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc
Confidence 443321111111 112222235678999999887655433 35555554432111 11 111111 123478888
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCCCCCccee--e--ecCC--CCceeee--EEEeCCEEEEEEEeCCeeEEEEEEcCCCCC
Q 004368 341 NHFFITRRSDELFNSELLACPVDNTSETTV--L--IPHR--ESVKLQD--IQLFIDHLAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~--l--~~~~--~~~~~~~--~~~~~~~l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
..++...... ....++.++......... + .+.. ....... ++.+++++++.....+ .+.++.++.++.
T Consensus 189 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~--~~~~~~~~~~~~ 264 (333)
T d1ri6a_ 189 QYAYCVNELN--SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS--LITVFSVSEDGS 264 (333)
T ss_dssp SEEEEEETTT--TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT--EEEEEEECTTSC
T ss_pred eeEEeecccc--CceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCC--eEEEEEEcCCCC
Confidence 8776665443 123344433322111111 1 1111 1111222 3334456655544443 455666665443
Q ss_pred ccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcEEEE
Q 004368 413 PLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLK 470 (758)
Q Consensus 413 ~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~~~~ 470 (758)
.. .............++.+++|++.+++ ..+...--.+|.+|.++|+.+.+
T Consensus 265 ~~------~~~~~~~~~~~p~~~a~spDGk~l~v-a~~~~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 265 VL------SKEGFQPTETQPRGFNVDHSGKYLIA-AGQKSHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp CE------EEEEEEECSSSCCCEEECTTSSEEEE-ECTTTCEEEEEEEETTTTEEEEE
T ss_pred EE------EEEEEeCCCCCeeEEEEeCCCCEEEE-EECCCCeEEEEEEECCCCcEEEE
Confidence 21 11111111112234567889987644 33333334688889999885433
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=98.61 E-value=1.3e-08 Score=98.53 Aligned_cols=81 Identities=10% Similarity=0.040 Sum_probs=58.4
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
++.|+||++||+.+... .|......| .+|.|..+|++|.++ ..+|+++++..+. .
T Consensus 15 ~~~~~l~~lhg~~g~~~--~~~~la~~L--~~~~v~~~~~~g~~~----------------~a~~~~~~i~~~~-----~ 69 (230)
T d1jmkc_ 15 DQEQIIFAFPPVLGYGL--MYQNLSSRL--PSYKLCAFDFIEEED----------------RLDRYADLIQKLQ-----P 69 (230)
T ss_dssp TCSEEEEEECCTTCCGG--GGHHHHHHC--TTEEEEEECCCCSTT----------------HHHHHHHHHHHHC-----C
T ss_pred CCCCeEEEEcCCCCCHH--HHHHHHHHC--CCCEEeccCcCCHHH----------------HHHHHHHHHHHhC-----C
Confidence 44689999999776553 355555555 379999999998753 2356666555432 2
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCCc
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPDL 619 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~~ 619 (758)
..++.++|||+||.++..++.+.|++
T Consensus 70 ~~~~~lvGhS~GG~vA~~~A~~~~~~ 95 (230)
T d1jmkc_ 70 EGPLTLFGYSAGCSLAFEAAKKLEGQ 95 (230)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEeeccChHHHHHHHHhhhhh
Confidence 36799999999999999888876543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.61 E-value=2.3e-05 Score=77.59 Aligned_cols=231 Identities=11% Similarity=0.085 Sum_probs=126.7
Q ss_pred EEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecC
Q 004368 205 VAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKD 283 (758)
Q Consensus 205 lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~ 283 (758)
-||..+..+ ..|.|+|+++++.+.. .......+++|||||+.+|++... ...|.++++.++ +....+....
T Consensus 3 ~~yV~~~~~---~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~---~~~i~v~d~~t~--~~~~~~~~~~ 74 (301)
T d1l0qa2 3 FAYIANSES---DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAH---SNDVSIIDTATN--NVIATVPAGS 74 (301)
T ss_dssp EEEEEETTT---TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGG---GTEEEEEETTTT--EEEEEEECSS
T ss_pred EEEEEECCC---CEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECC---CCEEEEEECCCC--ceeeeeeccc
Confidence 366665443 2699999999997763 333344568999999544554322 236888899876 2333333222
Q ss_pred CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCC
Q 004368 284 DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVD 363 (758)
Q Consensus 284 ~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~ 363 (758)
....+.+++||+++++.... ...+.+++..+++....+..........++++|+.+++....+ ..+...+..
T Consensus 75 --~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~----~~~~~~~~~ 146 (301)
T d1l0qa2 75 --SPQGVAVSPDGKQVYVTNMA--SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGD----KTVSVINTV 146 (301)
T ss_dssp --SEEEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT----TEEEEEETT
T ss_pred --cccccccccccccccccccc--cceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccc----cceeeeecc
Confidence 22467899999998876543 3456777887765223332222223345899999888776654 346666665
Q ss_pred CCCcceeeecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCC
Q 004368 364 NTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSS 441 (758)
Q Consensus 364 ~~~~~~~l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~ 441 (758)
+. .....+..... ...+.+. +..+++.....+ .+.++... .... ...+.... ...+...+.++
T Consensus 147 ~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~-----~~~~~~~~---~~~~~~~~~~g 211 (301)
T d1l0qa2 147 TK-AVINTVSVGRS--PKGIAVTPDGTKVYVANFDSM--SISVIDTV--TNSV-----IDTVKVEA---APSGIAVNPEG 211 (301)
T ss_dssp TT-EEEEEEECCSS--EEEEEECTTSSEEEEEETTTT--EEEEEETT--TTEE-----EEEEECSS---EEEEEEECTTS
T ss_pred cc-ceeeecccCCC--ceEEEeeccccceeeeccccc--cccccccc--ceee-----eecccccC---Ccceeeccccc
Confidence 42 22223333222 3334444 345554433333 34455444 2211 01111111 11123345667
Q ss_pred cEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 442 RILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 442 ~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
+.+++.. .-.....++.+|..+++.
T Consensus 212 ~~~~v~~-~~~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 212 TKAYVTN-VDKYFNTVSMIDTGTNKI 236 (301)
T ss_dssp SEEEEEE-ECSSCCEEEEEETTTTEE
T ss_pred ccccccc-ccceeeeeeeeecCCCeE
Confidence 6665443 333456899999998873
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.61 E-value=2.8e-06 Score=88.17 Aligned_cols=118 Identities=11% Similarity=-0.048 Sum_probs=73.9
Q ss_pred EECCCCCEEEEEE--eCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCC-----CCCCceEEEEEc
Q 004368 197 QVSPDNKLVAYAE--DTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDE-----ILRPDKAWLHKL 268 (758)
Q Consensus 197 ~~SPDG~~lAy~~--~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~-----~~~~~~v~~~~l 268 (758)
..+|||+...... ...| ..+||++|.++++.+.....+....++||||| .|++..... ..+...|..++.
T Consensus 26 a~~~~~~~~~v~~~~~~~g--~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~ 103 (368)
T d1mdah_ 26 GPGAISRRSHITLPAYFAG--TTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP 103 (368)
T ss_dssp CCCCCTTEEEEEECTTTCS--SEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred ccCCCCcceeEEeeccCCC--cceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEEC
Confidence 5688888765444 4444 47899999999998764323334568999999 566554311 122345788888
Q ss_pred CCCCCCcEEEeeecCC-ce-----eeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 269 EADQSNDICLYHEKDD-IY-----SLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~-~~-----~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
.+... +.....+.. .+ -..+.|||||++|++..... ..++++|+.+++
T Consensus 104 ~t~~~--~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~--~~v~~~d~~~~~ 157 (368)
T d1mdah_ 104 VTFLP--IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS--SAAAGLSVPGAS 157 (368)
T ss_dssp TTCCE--EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS--SCEEEEEETTTE
T ss_pred CCCcE--eeeecCCccceecccCCccceEECCCCCEEEEEeCCC--CeEEEEECCCCc
Confidence 77632 222221111 11 12478999999998865432 457788888775
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.60 E-value=5.7e-08 Score=106.69 Aligned_cols=134 Identities=17% Similarity=0.167 Sum_probs=87.4
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCc-cCCCCCCChHHHHHH-HcCcEEEEEecCCCCCCchhHH-hcccc
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE-ICNDPAFNSSRLSLL-DRGFIFAIAQIRGGGELGRQWY-ENGKF 569 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~-~~G~~v~~~~~RG~g~~G~~~~-~~~~~ 569 (758)
|.|= +.+-|+.|+.. ..+++.||+|++|||.- ......+......++ ..+.+|+.+|||-+- +|.=.. .....
T Consensus 77 sEDC--L~LnI~~P~~~-~~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~-~GFl~~~~~~~~ 152 (517)
T d1ukca_ 77 SEDC--LFINVFKPSTA-TSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGA-LGFLASEKVRQN 152 (517)
T ss_dssp ESCC--CEEEEEEETTC-CTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHH-HHHCCCHHHHHS
T ss_pred CCcC--CEEEEEeCCCC-CCCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccc-eeecCccccccc
Confidence 3454 34445667764 44567899999999733 223334554444444 457899999999532 111000 00001
Q ss_pred cCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhh----CCCceeEEEEcCCcc
Q 004368 570 LKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM----RPDLFKAAVAAVPFV 630 (758)
Q Consensus 570 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~----~p~~f~a~v~~~~~~ 630 (758)
..+-..+.|.+.|++|+.++ -..||++|.|+|+|+||..+.+.+.. ...+|+.+|+.+|..
T Consensus 153 ~~~N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~ 220 (517)
T d1ukca_ 153 GDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 220 (517)
T ss_dssp SCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred cccchhHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccccc
Confidence 12234679999999999776 34699999999999999988766543 224999999999854
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.60 E-value=1.4e-08 Score=112.19 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=87.4
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccC-CCCCCChHH----HHHHHcCcEEEEEecCCCCCCchhHHhc-
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC-NDPAFNSSR----LSLLDRGFIFAIAQIRGGGELGRQWYEN- 566 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~----~~l~~~G~~v~~~~~RG~g~~G~~~~~~- 566 (758)
|.|= +.+-|+.|+.. ..+++.||||++|||.... ....|.... ..++.++++|+.+|||-+- +| |...
T Consensus 94 sEDC--L~LnI~~P~~~-~~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~-~G--Fl~~~ 167 (534)
T d1llfa_ 94 SEDC--LTINVVRPPGT-KAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVAS-WG--FLAGD 167 (534)
T ss_dssp CSCC--CEEEEEECTTC-CTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHH-HH--HCCSH
T ss_pred CCcC--CEEEEEECCCC-CCCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCc-cc--ccCCc
Confidence 4444 44555667765 5667899999999974322 222243322 2345679999999999542 11 1110
Q ss_pred --ccccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhh-----CC---CceeEEEEcCCc
Q 004368 567 --GKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM-----RP---DLFKAAVAAVPF 629 (758)
Q Consensus 567 --~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~-----~p---~~f~a~v~~~~~ 629 (758)
.....+...+.|.+.|++|+.++ -..||++|.|+|+|+||..+.+.+.. -| .+|+.+|+.+|-
T Consensus 168 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 168 DIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp HHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred ccccccccccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 01123335678999999999876 23699999999999999988766641 12 379999999974
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2.7e-08 Score=109.88 Aligned_cols=131 Identities=16% Similarity=0.206 Sum_probs=89.5
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCC-CCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhc-cccc
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN-GKFL 570 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~-~~~~ 570 (758)
|.|= +.+-|+.|+.. ..+.+.||+|++|||...... ..+.. ...++.++.+|+.+|||-+- +|. ... ....
T Consensus 93 sEDC--L~LnI~~P~~~-~~~~~lPV~v~ihGG~~~~gs~~~~~~-~~~~~~~~vIvVt~nYRLg~-~GF--l~~~~~~~ 165 (532)
T d2h7ca1 93 SEDC--LYLNIYTPADL-TKKNRLPVMVWIHGGGLMVGAASTYDG-LALAAHENVVVVTIQYRLGI-WGF--FSTGDEHS 165 (532)
T ss_dssp ESCC--CEEEEEECSCT-TSCCCEEEEEEECCSTTTSCCSTTSCC-HHHHHHHTCEEEEECCCCHH-HHH--CCCSSTTC
T ss_pred CCcC--CEEEEEECCCC-CCCCCcEEEEEEeCCcccccccccCCc-hhhhhcCceEEEEEeeccCC-Ccc--cccccccc
Confidence 4454 44455667765 556779999999998443322 22322 33456789999999999541 111 110 1112
Q ss_pred CCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhh--CCCceeEEEEcCCcc
Q 004368 571 KKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPFV 630 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~~~ 630 (758)
.+-..+.|.+.|++|+.++ -.-||++|.|+|+|+||..+...+.. ...+|+.+|+.+|..
T Consensus 166 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~ 230 (532)
T d2h7ca1 166 RGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA 230 (532)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred ccccccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence 2345689999999999775 34699999999999999988777653 235999999999754
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.57 E-value=9.8e-08 Score=97.68 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=75.9
Q ss_pred CCCCEEEEecCCCccCCC----CCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHc
Q 004368 514 GSDPLLLYGYGSYEICND----PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 589 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~----~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 589 (758)
.++|+| ++||..+.... ..|......|.++||.|+++|+||.|.... .....+++.+.++.+++.
T Consensus 7 ~k~Pvv-lvHG~~g~~~~~~~~~~~~~~~~~L~~~G~~V~~~~~~g~g~s~~----------~~~~~~~l~~~i~~~~~~ 75 (319)
T d1cvla_ 7 TRYPVI-LVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDG----------PNGRGEQLLAYVKQVLAA 75 (319)
T ss_dssp CSSCEE-EECCTTBSSEETTTEESSTTHHHHHHHTTCCEEECCCBCSSCTTS----------TTSHHHHHHHHHHHHHHH
T ss_pred CCCCEE-EECCCCCCcchhhhhhhHHHHHHHHHHCCCEEEEecCCCCCCCCC----------CcccHHHHHHHHHHHHHH
Confidence 357865 57996654322 136667788999999999999998875421 112346677766665544
Q ss_pred CCCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 590 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 590 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
.+.++|.++|||+||.++..++.++|++++.+|..++
T Consensus 76 --~~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~ 112 (319)
T d1cvla_ 76 --TGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGT 112 (319)
T ss_dssp --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred --hCCCCEEEEeccccHHHHHHHHHHCccccceEEEECC
Confidence 2458999999999999999999999999999998765
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.56 E-value=5.6e-06 Score=85.90 Aligned_cols=144 Identities=12% Similarity=0.093 Sum_probs=85.6
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc---CcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~---~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
|...+|||||++||+... + ..|+|||+++++.... .+. +.+..++|+||+.++.+...+. .++++++
T Consensus 10 It~~~~s~dg~~la~~~~-~----~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~----~i~vWd~ 80 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPN-N----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR----NAYVWTL 80 (371)
T ss_dssp CCEEEECTTSSEEEEECS-S----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS----CEEEEEE
T ss_pred eEEEEECCCCCEEEEEeC-C----CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCC----eEEEEee
Confidence 567799999999997643 2 3699999988875433 332 2356799999995444543321 3666676
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEE--eec-ccccee-eEEeecCCEEE
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV--LTP-RVVGVD-TAASHRGNHFF 344 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~--l~~-~~~~~~-~~~s~dg~~l~ 344 (758)
.++..+....+..... ....+.|+||+++|+..+.+ +.-.+|.++..... ... ... ....+. ..|+|+|+.|+
T Consensus 81 ~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~l~~~s~d-~~i~i~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~ 157 (371)
T d1k8kc_ 81 KGRTWKPTLVILRINR-AARCVRWAPNEKKFAVGSGS-RVISICYFEQENDW-WVCKHIKKPIRSTVLSLDWHPNSVLLA 157 (371)
T ss_dssp ETTEEEEEEECCCCSS-CEEEEEECTTSSEEEEEETT-SSEEEEEEETTTTE-EEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred cccccccccccccccc-cccccccccccccceeeccc-Ccceeeeeeccccc-cccccccccccccccccccccccccee
Confidence 5543222333333222 23467899999998876543 33456666654432 111 111 112222 34899999876
Q ss_pred EEEc
Q 004368 345 ITRR 348 (758)
Q Consensus 345 ~~s~ 348 (758)
..+.
T Consensus 158 s~s~ 161 (371)
T d1k8kc_ 158 AGSC 161 (371)
T ss_dssp EEET
T ss_pred cccc
Confidence 5544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=2.2e-05 Score=79.15 Aligned_cols=149 Identities=9% Similarity=0.085 Sum_probs=79.2
Q ss_pred CEEEEEEeCCCCeEEEEEEEECCCCce-eec---cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEE
Q 004368 203 KLVAYAEDTKGDEIYTVYVIDIETGTP-VGK---PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICL 278 (758)
Q Consensus 203 ~~lAy~~~~~G~e~~~l~v~dl~~g~~-~~~---~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v 278 (758)
|+++|.....+ .+|+||++.+... ... ..++....++|||||+.+|++.... ..+..+++..+......+
T Consensus 3 ~~~v~v~~~~~---~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d---~~i~~~~i~~~~~~~~~~ 76 (333)
T d1ri6a_ 3 KQTVYIASPES---QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE---FRVLAYRIAPDDGALTFA 76 (333)
T ss_dssp EEEEEEEEGGG---TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTT---TEEEEEEECTTTCCEEEE
T ss_pred ceEEEEECCCC---CcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCC---CeEEEEEEeCCCCcEEEe
Confidence 45677766333 4788888865432 211 2234456799999995445554322 246666666553322333
Q ss_pred eeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC--ceEEeeccccce-eeEEeecCCEEEEEEcCCCCCCc
Q 004368 279 YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVGV-DTAASHRGNHFFITRRSDELFNS 355 (758)
Q Consensus 279 ~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~ 355 (758)
........-..+++||||++|++....... +..++..... ............ ...+++|++.++...... .
T Consensus 77 ~~~~~~~~p~~l~~spDg~~l~v~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~----~ 150 (333)
T d1ri6a_ 77 AESALPGSLTHISTDHQGQFVFVGSYNAGN--VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ----D 150 (333)
T ss_dssp EEEECSSCCSEEEECTTSSEEEEEETTTTE--EEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG----T
T ss_pred eecccCCCceEEEEcCCCCEEeecccCCCc--eeeeccccccceecccccCCCccceEEEeeecceeeecccccc----c
Confidence 222222222357899999999876544433 3444433332 111111121222 234899999887776543 3
Q ss_pred EEEEEeCC
Q 004368 356 ELLACPVD 363 (758)
Q Consensus 356 ~L~~~~~~ 363 (758)
.+...+..
T Consensus 151 ~i~~~~~~ 158 (333)
T d1ri6a_ 151 RICLFTVS 158 (333)
T ss_dssp EEEEEEEC
T ss_pred eeeEEEec
Confidence 45554543
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.51 E-value=4.1e-08 Score=108.65 Aligned_cols=126 Identities=16% Similarity=0.146 Sum_probs=84.0
Q ss_pred EEEEEEeeccccccCCCCCEEEEecCCCc---cCCCCCCChHHHHH-HHcCcEEEEEecCCCCCCchhHHhcccccCCcC
Q 004368 499 IPICIVYRKNLVKLDGSDPLLLYGYGSYE---ICNDPAFNSSRLSL-LDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN 574 (758)
Q Consensus 499 i~~~l~~p~~~~~~~~~~P~vl~~hGg~~---~~~~~~~~~~~~~l-~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~ 574 (758)
+.+-|+.|.. ...++.||+|++|||.. +.....+.. ..+ +.++.+|+.+|||-+- +|.-.........+..
T Consensus 97 L~LnI~~P~~--~~~~~lPV~v~ihGG~~~~gs~~~~~~~~--~~~~~~~~vvvVt~nYRlg~-~Gfl~~~~~~~~~gN~ 171 (542)
T d2ha2a1 97 LYLNVWTPYP--RPASPTPVLIWIYGGGFYSGAASLDVYDG--RFLAQVEGAVLVSMNYRVGT-FGFLALPGSREAPGNV 171 (542)
T ss_dssp CEEEEEEESS--CCSSCEEEEEEECCSTTTCCCTTSGGGCT--HHHHHHHCCEEEEECCCCHH-HHHCCCTTCSSCCSCH
T ss_pred CEEEEEecCC--CCCCCCcEEEEEEECccccccCcccccCc--hhhhhhccceeEeeeeeccc-eeeecccccccCCCcC
Confidence 3444555754 34567899999999732 233232332 333 4579999999999421 1110001111223345
Q ss_pred hHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhC--CCceeEEEEcCCc
Q 004368 575 TFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPF 629 (758)
Q Consensus 575 ~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~ 629 (758)
.+.|.+.|++|+.++ -.-||++|.|+|+|+||..+...+... ..+|..+|+.++.
T Consensus 172 Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~ 231 (542)
T d2ha2a1 172 GLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGT 231 (542)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCC
T ss_pred CcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeeccc
Confidence 689999999999776 346999999999999999988777642 2599999999874
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.51 E-value=2.8e-08 Score=108.26 Aligned_cols=128 Identities=17% Similarity=0.159 Sum_probs=84.5
Q ss_pred EEEEEEeeccccccCCCCCEEEEecCCCccCCCC-CCChHHHHH-HHcCcEEEEEecCCCCCCchhHHhcc-cccCCcCh
Q 004368 499 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNSSRLSL-LDRGFIFAIAQIRGGGELGRQWYENG-KFLKKKNT 575 (758)
Q Consensus 499 i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~~~~l-~~~G~~v~~~~~RG~g~~G~~~~~~~-~~~~~~~~ 575 (758)
+.+-|+.|+.. +++.||+|++|||....... .+......+ .+.+.+|+.+|||-+- +|.-..... ....+-..
T Consensus 82 L~lni~~P~~~---~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vVvV~~nYRlg~-~GFl~~~~~~~~~~gN~G 157 (483)
T d1qe3a_ 82 LYVNVFAPDTP---SQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGP-FGFLHLSSFDEAYSDNLG 157 (483)
T ss_dssp CEEEEEEECSS---CCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHH-HHSCCCTTTCTTSCSCHH
T ss_pred CEEEEEECCCC---CCCCceEEEEeecccccCCccccccccccccccCceEEEeecccccc-hhhccccccccccccccc
Confidence 44555667643 46799999999984332221 112222334 4458999999999542 121000111 11233456
Q ss_pred HhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhC--CCceeEEEEcCCcc
Q 004368 576 FTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFV 630 (758)
Q Consensus 576 ~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~~ 630 (758)
+.|.+.|++|+.++ -..||++|.|+|+|+||..+...+... ..+|+.+|+.+|..
T Consensus 158 l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 158 LLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred cHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 89999999999776 346999999999999999988777642 25999999998853
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.51 E-value=7.8e-08 Score=106.27 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=85.2
Q ss_pred EEEEEEeeccccccCCCCCEEEEecCCCccCC-CCCCC--hHHH-HH-HHcCcEEEEEecCCCC-CC--chhHHhccccc
Q 004368 499 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICN-DPAFN--SSRL-SL-LDRGFIFAIAQIRGGG-EL--GRQWYENGKFL 570 (758)
Q Consensus 499 i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~-~~~~~--~~~~-~l-~~~G~~v~~~~~RG~g-~~--G~~~~~~~~~~ 570 (758)
+.+-|+.|++. ..+++.||+|++|||.-... ...+. .... .+ +.++.+|+.+|||-+- |+ ..+... ..
T Consensus 106 L~LnI~~P~~~-~~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~~---~~ 181 (544)
T d1thga_ 106 LYLNVFRPAGT-KPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITA---EG 181 (544)
T ss_dssp CEEEEEEETTC-CTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH---HT
T ss_pred CEEEEEECCCC-CCCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEecccccccccccCCchhhc---cc
Confidence 44555668766 56678999999999743221 12222 2222 33 4579999999999432 11 011111 12
Q ss_pred CCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhh--------CCCceeEEEEcCCc
Q 004368 571 KKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--------RPDLFKAAVAAVPF 629 (758)
Q Consensus 571 ~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--------~p~~f~a~v~~~~~ 629 (758)
.+-..+.|.+.|++|+.++ -.-||++|.|+|+|+||..+...+.- ...+|+.+|+.+|.
T Consensus 182 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 182 NTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred cccHHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 2345679999999999776 34699999999999999988777652 12499999999874
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=98.49 E-value=2.7e-07 Score=93.06 Aligned_cols=102 Identities=16% Similarity=0.000 Sum_probs=74.2
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 593 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 593 (758)
...| ||++||.........|......|.++||.|+.+|++|.|.... ....+++.++++++.+.-.
T Consensus 30 ~~~P-VvlvHG~~~~~~~~~~~~~~~~L~~~Gy~v~~~d~~g~g~~d~-----------~~sae~la~~i~~v~~~~g-- 95 (317)
T d1tcaa_ 30 VSKP-ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFMLNDT-----------QVNTEYMVNAITALYAGSG-- 95 (317)
T ss_dssp CSSE-EEEECCTTCCHHHHHTTTHHHHHHTTTCEEEEECCTTTTCSCH-----------HHHHHHHHHHHHHHHHHTT--
T ss_pred CCCc-EEEECCCCCCCcchhHHHHHHHHHhCCCeEEEecCCCCCCCch-----------HhHHHHHHHHHHHHHHhcc--
Confidence 4456 5678994333222234566788899999999999998653211 2335778888998877633
Q ss_pred CCcEEEEEeChhHHHHHHHHhhCCC---ceeEEEEcCCc
Q 004368 594 KEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAVPF 629 (758)
Q Consensus 594 ~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~~~ 629 (758)
.++|.|+|||+||+++.+++.++|+ +.+.+|..++-
T Consensus 96 ~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~ 134 (317)
T d1tcaa_ 96 NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPD 134 (317)
T ss_dssp SCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCC
T ss_pred CCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCC
Confidence 3789999999999999999999884 57777777764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.48 E-value=4e-06 Score=85.06 Aligned_cols=99 Identities=8% Similarity=0.055 Sum_probs=65.5
Q ss_pred EEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccC--cceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 196 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG--VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 196 ~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~--~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
+++|+||++|+..... .+|.|+|+++++.+.. .++. ...+++|+|||+.+|++... ...|+.+++.++.
T Consensus 2 ~a~~~~~~~l~~~~~~-----~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~---~~~v~~~d~~t~~ 73 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH---YGDIYGIDLDTCK 73 (346)
T ss_dssp CCCCTTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT---TTEEEEEETTTTE
T ss_pred ccCCCCCcEEEEEcCC-----CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECC---CCcEEEEeCccCe
Confidence 5789999999876543 3699999999998753 3432 24579999999666665432 2358888988762
Q ss_pred CCcEEEeeecC-Cc----eeeEEEEcCCCcEEEEEec
Q 004368 273 SNDICLYHEKD-DI----YSLGLQASESKKFLFIASE 304 (758)
Q Consensus 273 ~~~~~v~~~~~-~~----~~~~~~~S~Dg~~l~~~s~ 304 (758)
....+.... .. ...++.+||||+++++...
T Consensus 74 --~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 74 --NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp --EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred --eeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence 222222111 10 1125789999999987653
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.46 E-value=2.2e-05 Score=83.03 Aligned_cols=252 Identities=10% Similarity=-0.002 Sum_probs=128.6
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc------CcceeEEEecCC-eEEEEEeCCCCCCceEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV------GVTASVEWAGNE-ALVYITMDEILRPDKAW 264 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~------~~~~~~~wspDg-~l~y~~~~~~~~~~~v~ 264 (758)
+.++++||||++|+ +...+| .|.+||+++++.... .+. +...+++||||| .++...... ..+.
T Consensus 64 ~~~vafSPDGk~l~-~~~~d~----~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~----~~v~ 134 (426)
T d1hzua2 64 VHISRMSASGRYLL-VIGRDA----RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP----PQFA 134 (426)
T ss_dssp EEEEEECTTSCEEE-EEETTS----EEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES----SEEE
T ss_pred eeEEEECCCCCEEE-EEeCCC----CEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC----CeEE
Confidence 56789999999985 445444 699999999875432 221 122346788999 555443322 2466
Q ss_pred EEEcCCCCCCcEEEeeec----------CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC--ceEEeeccccce
Q 004368 265 LHKLEADQSNDICLYHEK----------DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVGV 332 (758)
Q Consensus 265 ~~~l~~~~~~~~~v~~~~----------~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~ 332 (758)
+.+..++.. ..+.... .......+..++|++.+++.... ...+..++..+.. ....+.....-.
T Consensus 135 i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~ 210 (426)
T d1hzua2 135 IMDGETLEP--KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE--TGKVLLVNYKDIDNLTVTSIGAAPFLA 210 (426)
T ss_dssp EEETTTCCE--EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT--TTEEEEEECSSSSSCEEEEEECCSSEE
T ss_pred EEcCCccce--eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC--CCeEEEEEeccccceeeEEeccCCccE
Confidence 666665522 2221110 01112345678888887765443 3456677666554 112221121112
Q ss_pred eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCC---ceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 333 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRES---VKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 333 ~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
...++++|++++...... ..+..++..+. ......+.... .....+...+...+......+...+.++....
T Consensus 211 ~~~~~~~g~~~~~a~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~ 285 (426)
T d1hzua2 211 DGGWDSSHRYFMTAANNS----NKVAVIDSKDR-RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 285 (426)
T ss_dssp EEEECTTSCEEEEEETTC----SEEEEEETTTT-EEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCT
T ss_pred eeeECCCCcEEEeeeecc----cceeeeecccc-cEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccc
Confidence 334899999777665543 35566666542 11112221111 11222333344555555544444555555442
Q ss_pred CCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCC-----CEEEEEECCCCc
Q 004368 410 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTP-----PSVYDYDMDMGI 466 (758)
Q Consensus 410 ~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P-----~~i~~~d~~~~~ 466 (758)
........ .....++.+...+..+.+++++..+++..+ ..| .++..+|+++++
T Consensus 286 ~~~~~~~~--~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~--~~~s~~~~~tv~vwd~~t~~ 343 (426)
T d1hzua2 286 KNHPQYAW--KKVAELQGQGGGSLFIKTHPKSSHLYVDTT--FNPDARISQSVAVFDLKNLD 343 (426)
T ss_dssp TTCTTTBT--SEEEEEECSSSCCCCEECCTTCSEEEECCT--TCSSHHHHTCEEEEETTCTT
T ss_pred cccccccc--eEeEEEecCCCceeEEEcCCCCceEEEeec--CCCCcccCCEEEEEECCCCC
Confidence 21111000 111223333333455677889988865322 122 358888988876
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.43 E-value=1.6e-05 Score=84.39 Aligned_cols=199 Identities=9% Similarity=0.008 Sum_probs=111.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc------CcceeEEEecCC-eEEEEEeCCCCCCceE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV------GVTASVEWAGNE-ALVYITMDEILRPDKA 263 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~------~~~~~~~wspDg-~l~y~~~~~~~~~~~v 263 (758)
.+..+++||||++|+.. +++| .|.++|+++++.... .++ +...++.||||| .++.+.... ..+
T Consensus 63 ~~~~v~fSpDG~~l~~~-s~dg----~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~----~~v 133 (432)
T d1qksa2 63 AVHISRLSASGRYLFVI-GRDG----KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP----PQY 133 (432)
T ss_dssp CEEEEEECTTSCEEEEE-ETTS----EEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET----TEE
T ss_pred CeeEEEECCCCCEEEEE-cCCC----CEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC----CeE
Confidence 36678999999999654 4444 699999998875321 221 112334677899 554444332 247
Q ss_pred EEEEcCCCCCCcEEEeeec----------CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCc--eEEeeccccc
Q 004368 264 WLHKLEADQSNDICLYHEK----------DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE--LRVLTPRVVG 331 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~----------~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~--~~~l~~~~~~ 331 (758)
.+++..+++. ...+... .......+..|+||+.++++... ..++++++..+.+. ...+.....-
T Consensus 134 ~i~d~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~--~~~i~~~d~~~~~~~~~~~i~~g~~~ 209 (432)
T d1qksa2 134 VIMDGETLEP--KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE--TGKILLVDYTDLNNLKTTEISAERFL 209 (432)
T ss_dssp EEEETTTCCE--EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT--TTEEEEEETTCSSEEEEEEEECCSSE
T ss_pred EEEeCccccc--eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc--CCeEEEEEccCCCcceEEEEcccCcc
Confidence 7778776632 2222210 11112356789999988776543 45788999887651 1222211111
Q ss_pred eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCC----ceeeeEEEeCCEEEEEEEeCCeeEEEEEEc
Q 004368 332 VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRES----VKLQDIQLFIDHLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 332 ~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l 407 (758)
....++|||++++...+.. ..+..++.+.. .....+..... .....+.......+......+...+.++..
T Consensus 210 ~~~~~spdg~~~~va~~~~----~~v~v~d~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~ 284 (432)
T d1qksa2 210 HDGGLDGSHRYFITAANAR----NKLVVIDTKEG-KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGT 284 (432)
T ss_dssp EEEEECTTSCEEEEEEGGG----TEEEEEETTTT-EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred ccceECCCCCEEEEecccc----ceEEEeecccc-eEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccc
Confidence 2345999999888887654 45777777642 22222222111 112333444445555555545445555654
Q ss_pred C
Q 004368 408 P 408 (758)
Q Consensus 408 ~ 408 (758)
.
T Consensus 285 ~ 285 (432)
T d1qksa2 285 D 285 (432)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.42 E-value=7.6e-05 Score=75.50 Aligned_cols=249 Identities=9% Similarity=0.057 Sum_probs=135.7
Q ss_pred EEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc--ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEc
Q 004368 191 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 191 ~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l 268 (758)
+.+.++.|.+||+ | |.+|..+ ..|+.++.++++..... ......++++++||.+|.+..........++..+.
T Consensus 40 ~~lEG~~~D~~G~-L-y~~D~~~---g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~ 114 (319)
T d2dg1a1 40 LQLEGLNFDRQGQ-L-FLLDVFE---GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 114 (319)
T ss_dssp CCEEEEEECTTSC-E-EEEETTT---CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred cCcEeCEECCCCC-E-EEEECCC---CEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcC
Confidence 4457899999998 4 4556544 36888999887655432 22335568999999776654322222334555555
Q ss_pred CCCCCCcEEEeeecC-CceeeEEEEcCCCcEEEEEecC----CcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCE
Q 004368 269 EADQSNDICLYHEKD-DIYSLGLQASESKKFLFIASES----KITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNH 342 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~-~~~~~~~~~S~Dg~~l~~~s~~----~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~ 342 (758)
.+. ....+..... ....-++.+.+||+ |+++... .....+|+++.+++. .+.+...... ....|++||+.
T Consensus 115 ~~~--~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 115 NGD--NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKV 190 (319)
T ss_dssp TSC--SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSE
T ss_pred CCc--eeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccce
Confidence 444 2222332221 11223567899997 4555422 223569999987765 5555432211 12348999999
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCCCccee------eecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCccc
Q 004368 343 FFITRRSDELFNSELLACPVDNTSETTV------LIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLK 415 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~~~~~~------l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~ 415 (758)
||+.... +.+|++++++..+.... ...........++.++.+ .|++....++ .|.+++. +|+.+
T Consensus 191 lyvad~~----~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g--~V~~~~p--~G~~l- 261 (319)
T d2dg1a1 191 LWVTETT----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG--RVLVFNK--RGYPI- 261 (319)
T ss_dssp EEEEEGG----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT--EEEEECT--TSCEE-
T ss_pred EEEeccc----CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCC--EEEEECC--CCcEE-
Confidence 9887543 36899988764322111 111222223567888765 4555544444 4666653 46644
Q ss_pred cccCCceeeccCccc----ccCCCCcccCCcEEEEEEecCCCC--CEEEEEEC
Q 004368 416 SLQGGKSVEFIDPVY----SIDPSESVFSSRILRFHYSSLRTP--PSVYDYDM 462 (758)
Q Consensus 416 ~l~~~~~i~~p~~~~----~i~~~~~~~d~~~l~~~~sS~~~P--~~i~~~d~ 462 (758)
.++.+|.... .+....+..+.+.++++..+...+ ..+|.++.
T Consensus 262 -----~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 262 -----GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp -----EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred -----EEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence 4555554211 111122233455565555443333 34666654
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.42 E-value=3.9e-07 Score=91.19 Aligned_cols=99 Identities=18% Similarity=0.181 Sum_probs=72.1
Q ss_pred CCCCEEEEecCCCccCCC---CCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcC
Q 004368 514 GSDPLLLYGYGSYEICND---PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 590 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~---~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 590 (758)
.++| ||++||-.+.... ..|......|.++||.|+.+|++|.+. .+.. .+++.+.++.+.+.-
T Consensus 6 ~~~P-vvlvHG~~g~~~~~~~~yw~~i~~~L~~~G~~v~~~~~~~~~~---~~~~----------a~~l~~~i~~~~~~~ 71 (285)
T d1ex9a_ 6 TKYP-IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDT---SEVR----------GEQLLQQVEEIVALS 71 (285)
T ss_dssp CSSC-EEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCSSSC---HHHH----------HHHHHHHHHHHHHHH
T ss_pred CCCC-EEEECCCCCCccccchhhHHHHHHHHHhCCCEEEEeCCCCCCC---cHHH----------HHHHHHHHHHHHHHc
Confidence 4678 6778995544322 236667789999999999999997653 3332 245555555544432
Q ss_pred CCCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 591 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 591 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
..+++.++|||+||+++..++.++|++++.+|..+.
T Consensus 72 --g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~t 107 (285)
T d1ex9a_ 72 --GQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGA 107 (285)
T ss_dssp --CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred --CCCeEEEEEECccHHHHHHHHHHCCccceeEEEECC
Confidence 347899999999999999999999999999887654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=3.7e-05 Score=78.17 Aligned_cols=192 Identities=12% Similarity=0.105 Sum_probs=111.4
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc---CcceeEEEecCCeEEEEEeCCCCCCceEEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~---~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~ 267 (758)
.+..++|||||++|+.... +| .|++||+........ .+. .....+.|+||+.++++...+ ..+..++
T Consensus 99 ~I~~v~~s~dg~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~i~~~~ 169 (337)
T d1gxra_ 99 YIRSCKLLPDGCTLIVGGE-AS----TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD----GNIAVWD 169 (337)
T ss_dssp BEEEEEECTTSSEEEEEES-SS----EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT----SCEEEEE
T ss_pred cEEEEEEcCCCCEEEEeec-cc----ccccccccccccccccccccccccccccccccccccccccccc----ccccccc
Confidence 4678899999999975543 33 699999876543321 222 224557899999555554432 2477778
Q ss_pred cCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEE
Q 004368 268 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFIT 346 (758)
Q Consensus 268 l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~ 346 (758)
+.+. +....... .......+.++++++.+++.+.+ ..+.++|+.+++ ..........+. ..|+|+++.++..
T Consensus 170 ~~~~--~~~~~~~~-~~~~v~~l~~s~~~~~~~~~~~d---~~v~i~d~~~~~-~~~~~~~~~~i~~l~~~~~~~~l~~~ 242 (337)
T d1gxra_ 170 LHNQ--TLVRQFQG-HTDGASCIDISNDGTKLWTGGLD---NTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp TTTT--EEEEEECC-CSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTTE-EEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred cccc--cccccccc-ccccccccccccccccccccccc---ccccccccccce-eecccccccceEEEEEccccccccee
Confidence 7765 22222222 22233467899999998876543 457788888765 222222222332 2488999887765
Q ss_pred EcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 347 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+.. ..+...++..... .....+ ...+..+.+..+ .++++...++. +++|++..
T Consensus 243 ~~d-----~~i~i~d~~~~~~-~~~~~~--~~~i~~v~~s~~g~~l~s~s~Dg~--i~iwd~~~ 296 (337)
T d1gxra_ 243 MES-----SNVEVLHVNKPDK-YQLHLH--ESCVLSLKFAYCGKWFVSTGKDNL--LNAWRTPY 296 (337)
T ss_dssp ETT-----SCEEEEETTSSCE-EEECCC--SSCEEEEEECTTSSEEEEEETTSE--EEEEETTT
T ss_pred ccc-----ccccccccccccc-cccccc--ccccceEEECCCCCEEEEEeCCCe--EEEEECCC
Confidence 543 3466777765322 122222 224556666543 33445556664 77898874
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.38 E-value=1e-07 Score=105.12 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=83.8
Q ss_pred EEEEEEeeccccccCCCCCEEEEecCCCc---cCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcCh
Q 004368 499 IPICIVYRKNLVKLDGSDPLLLYGYGSYE---ICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNT 575 (758)
Q Consensus 499 i~~~l~~p~~~~~~~~~~P~vl~~hGg~~---~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~ 575 (758)
+.+-|+.|+.. .++.||+|++|||.. ......+.. ....+.++.+|+.+|||-+- +|.-.........+-..
T Consensus 92 L~LnI~~P~~~---~~~lPV~v~ihGG~~~~g~~~~~~~~~-~~~~~~~~vvvVt~nYRlg~-~GFl~~~~~~~~~gN~G 166 (532)
T d1ea5a_ 92 LYLNIWVPSPR---PKSTTVMVWIYGGGFYSGSSTLDVYNG-KYLAYTEEVVLVSLSYRVGA-FGFLALHGSQEAPGNVG 166 (532)
T ss_dssp CEEEEEECSSC---CSSEEEEEEECCSTTTCCCTTCGGGCT-HHHHHHHTCEEEECCCCCHH-HHHCCCTTCSSSCSCHH
T ss_pred CEEEEEeCCCC---CCCCcEEEEEEcCCcccccCCccccCc-chhhcccCccEEEEeecccc-ccccccccccCCCCccc
Confidence 33444556543 357899999999832 222222322 22345679999999999532 11110111112233457
Q ss_pred HhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhC--CCceeEEEEcCCcc
Q 004368 576 FTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFV 630 (758)
Q Consensus 576 ~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~~ 630 (758)
+.|.+.|++|+.++ -.-||++|.|+|+|+||..+...+... ..+|+.+|+.++..
T Consensus 167 l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~ 226 (532)
T d1ea5a_ 167 LLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 226 (532)
T ss_dssp HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred chhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecccc
Confidence 89999999999776 346999999999999999887776631 25899999988753
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.7e-07 Score=103.06 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=84.0
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCcc---CCCCCCChHHHHH-HHcCcEEEEEecCCCCCCchhHHhccc
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI---CNDPAFNSSRLSL-LDRGFIFAIAQIRGGGELGRQWYENGK 568 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~---~~~~~~~~~~~~l-~~~G~~v~~~~~RG~g~~G~~~~~~~~ 568 (758)
|.|= +.+-|+.|... .++.||+|++|||... .....+. ...+ .+.+.+|+.+|||-+- +|.--.....
T Consensus 86 sEDC--L~lnI~~P~~~---~~~~PV~v~ihGG~~~~gs~~~~~~~--~~~~~~~~~vVvVt~nYRlg~-~Gfl~~~~~~ 157 (526)
T d1p0ia_ 86 SEDC--LYLNVWIPAPK---PKNATVLIWIYGGGFQTGTSSLHVYD--GKFLARVERVIVVSMNYRVGA-LGFLALPGNP 157 (526)
T ss_dssp CSCC--CEEEEEEESSC---CSSEEEEEEECCSTTTSCCTTCGGGC--THHHHHHHCCEEEEECCCCHH-HHHCCCTTCT
T ss_pred CCcC--CEEEEEeCCCC---CCCCceEEEEECCCcccccCcccccC--ccccccccceeEEeccccccc-ccccCCCCcc
Confidence 4454 34444567543 4568999999997432 2222222 2333 4569999999999531 1100000111
Q ss_pred ccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhh--CCCceeEEEEcCCc
Q 004368 569 FLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPF 629 (758)
Q Consensus 569 ~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~~ 629 (758)
...+-..+.|.+.|++|+.++ -.-||++|.|+|+|+||..+...+.. ...+|+.+|+.++-
T Consensus 158 ~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~ 223 (526)
T d1p0ia_ 158 EAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGS 223 (526)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCC
T ss_pred cccccccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhccccc
Confidence 233445789999999999775 34699999999999999998766653 23589999988764
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.36 E-value=1.6e-07 Score=104.48 Aligned_cols=132 Identities=18% Similarity=0.229 Sum_probs=84.5
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCC---ccCCCCCCChH----HHHHHHc-CcEEEEEecCCCCCCchhHH
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSY---EICNDPAFNSS----RLSLLDR-GFIFAIAQIRGGGELGRQWY 564 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~---~~~~~~~~~~~----~~~l~~~-G~~v~~~~~RG~g~~G~~~~ 564 (758)
|.|= +.+-|+.|......+++.||+|++|||. |+.....+... ...++.. +.+|+.+|||-+- +| |.
T Consensus 77 sEDC--L~LNI~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~-~G--Fl 151 (579)
T d2bcea_ 77 NEDC--LYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGP-LG--FL 151 (579)
T ss_dssp CSCC--CEEEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHH-HH--HC
T ss_pred CCcC--CEEEEEECCCCCCCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeecccccc-cc--cc
Confidence 4453 4445566765312345789999999983 22222223221 2455554 6999999999432 22 11
Q ss_pred hc-ccccCCcChHhHHHHHHHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhh--CCCceeEEEEcCCc
Q 004368 565 EN-GKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPF 629 (758)
Q Consensus 565 ~~-~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~~ 629 (758)
.. .....+-..+.|.+.|++|+.++ -.-||++|.|+|+|+||..+...+.. ...+|+.+|+.+|.
T Consensus 152 ~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs 222 (579)
T d2bcea_ 152 STGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp CCSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred cccccCCCccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCC
Confidence 11 11122345689999999999776 34699999999999999988766653 24699999999874
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.32 E-value=2.8e-05 Score=78.13 Aligned_cols=115 Identities=13% Similarity=0.090 Sum_probs=69.4
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc------CcceeEEEecCC-eEEEEEeCCC-------
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV------GVTASVEWAGNE-ALVYITMDEI------- 257 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~------~~~~~~~wspDg-~l~y~~~~~~------- 257 (758)
...+.+||||++|+.+...+| .|+++|+++++.+.. ... .....++|+||| .++.......
T Consensus 36 ~~~i~~spDg~~l~v~~~~~~----~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 36 PMVPMVAPGGRIAYATVNKSE----SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTT----EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ccEEEECCCCCEEEEEECCCC----eEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence 456799999999865544333 699999999987642 211 113468999999 5554433211
Q ss_pred CCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 258 LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 258 ~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
.....+...+..+. +....+... .....+.+++||++++.... +++++|..+++
T Consensus 112 ~~~~~~~~~d~~~~--~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~-----~~~~~d~~~~~ 165 (337)
T d1pbyb_ 112 VQPTRVALYDAETL--SRRKAFEAP--RQITMLAWARDGSKLYGLGR-----DLHVMDPEAGT 165 (337)
T ss_dssp ECCCEEEEEETTTT--EEEEEEECC--SSCCCEEECTTSSCEEEESS-----SEEEEETTTTE
T ss_pred ccccceeeccccCC--eEEEecccc--CCceEEEEcCCCCEEEEEcC-----CcceeeeecCc
Confidence 11234566666655 222222222 22235689999999987532 24567776654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.32 E-value=7.4e-05 Score=75.15 Aligned_cols=196 Identities=11% Similarity=0.020 Sum_probs=112.9
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-cCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+..+.|||||++|+...+.. ...+.|+++++++.... .. .+....++|+||+ .++.+...+. .|.++++
T Consensus 104 ~v~~v~~s~d~~~l~~~~~~~---~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~----~i~i~d~ 176 (311)
T d1nr0a1 104 PVKDISWDSESKRIAAVGEGR---ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN----TVAIFEG 176 (311)
T ss_dssp CEEEEEECTTSCEEEEEECCS---SCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS----CEEEEET
T ss_pred ccccccccccccccccccccc---cccccccccccccccccccccccccccccccccceeeeccccccc----ccccccc
Confidence 367789999999998765421 23477889988876542 11 2235668999999 4444443322 4777888
Q ss_pred CCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-------cccee-eEEeecC
Q 004368 269 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-------VVGVD-TAASHRG 340 (758)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-------~~~~~-~~~s~dg 340 (758)
.+. +....+.. .......+.++|||++|+..+.+ ..+.++|+.++.....+... ...+. ..|+|+|
T Consensus 177 ~~~--~~~~~~~~-~~~~i~~v~~~p~~~~l~~~~~d---~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~ 250 (311)
T d1nr0a1 177 PPF--KFKSTFGE-HTKFVHSVRYNPDGSLFASTGGD---GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 250 (311)
T ss_dssp TTB--EEEEEECC-CSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred ccc--cccccccc-ccccccccccCcccccccccccc---ccccccccccccccccccccccccccccccccccccCCCC
Confidence 765 22223322 22334468899999998765443 34677787765522222111 11222 2489999
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCC-CCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 341 NHFFITRRSDELFNSELLACPVDNTSETTVLIPHR-ESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
++|+..+. + ..|..+|+.+....+.+-.+. .......+.+.++.++ +...+|. +.+|+++
T Consensus 251 ~~l~tgs~-D----g~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~-s~s~dG~--i~~wd~d 311 (311)
T d1nr0a1 251 TKIASASA-D----KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV-SISANGF--INFVNPE 311 (311)
T ss_dssp SEEEEEET-T----SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE-EEETTCC--EEEEETT
T ss_pred CEEEEEeC-C----CeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEE-EEECCCE--EEEEeCC
Confidence 97765433 3 357778876532222222121 1223446777777765 4445664 6677653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.31 E-value=2.3e-05 Score=83.24 Aligned_cols=191 Identities=11% Similarity=0.015 Sum_probs=107.1
Q ss_pred CCCCCEE-EEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcE
Q 004368 199 SPDNKLV-AYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDI 276 (758)
Q Consensus 199 SPDG~~l-Ay~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~ 276 (758)
..|.+.+ +.+.+..| +|.|+|+++++.+.. .......+++|||||+.+|+...+ ..+.++++.++.....
T Consensus 27 ~~~~~~~~~v~~~d~g----~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~d----g~v~~~d~~t~~~~~~ 98 (432)
T d1qksa2 27 DWDLENLFSVTLRDAG----QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRD----GKVNMIDLWMKEPTTV 98 (432)
T ss_dssp CCCGGGEEEEEETTTT----EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT----SEEEEEETTSSSCCEE
T ss_pred cCCCCcEEEEEEcCCC----EEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCC----CCEEEEEeeCCCceEE
Confidence 3444433 44555444 699999999998764 223335668999999655665432 2588889877643221
Q ss_pred EEeeecC--CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-c----------cc--eeeEEeecCC
Q 004368 277 CLYHEKD--DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-V----------VG--VDTAASHRGN 341 (758)
Q Consensus 277 ~v~~~~~--~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-~----------~~--~~~~~s~dg~ 341 (758)
.-..... .....++.+||||++|+++.... ..+.++|.++++ +...... . .+ ....++|+|+
T Consensus 99 ~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~--~~v~i~d~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~ 175 (432)
T d1qksa2 99 AEIKIGSEARSIETSKMEGWEDKYAIAGAYWP--PQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP 175 (432)
T ss_dssp EEEECCSEEEEEEECCSTTCTTTEEEEEEEET--TEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred EEEecCCCCCCeEEecccCCCCCEEEEEcCCC--CeEEEEeCcccc-ceeeeccCCccccceeccCCCceeEEEECCCCC
Confidence 1111111 12233456789999998765433 457788988876 3322211 0 00 1123688888
Q ss_pred EEEEEEcCCCCCCcEEEEEeCCCCCcc-eeeecCCCCceeeeEEEeC--CEEEEEEEeCCeeEEEEEEcC
Q 004368 342 HFFITRRSDELFNSELLACPVDNTSET-TVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 342 ~l~~~s~~~~~~~~~L~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~l~v~~l~ 408 (758)
.+++..... ..+..++..+.... .+-++... .+.++.++. .++++.... ...+.+++..
T Consensus 176 ~~~vs~~~~----~~i~~~d~~~~~~~~~~~i~~g~--~~~~~~~spdg~~~~va~~~--~~~v~v~d~~ 237 (432)
T d1qksa2 176 EFIVNVKET----GKILLVDYTDLNNLKTTEISAER--FLHDGGLDGSHRYFITAANA--RNKLVVIDTK 237 (432)
T ss_dssp EEEEEETTT----TEEEEEETTCSSEEEEEEEECCS--SEEEEEECTTSCEEEEEEGG--GTEEEEEETT
T ss_pred EEEEEEccC----CeEEEEEccCCCcceEEEEcccC--ccccceECCCCCEEEEeccc--cceEEEeecc
Confidence 777665443 56788887653222 22334332 244555554 455544333 3356677766
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.31 E-value=5.5e-07 Score=99.98 Aligned_cols=115 Identities=21% Similarity=0.157 Sum_probs=79.0
Q ss_pred CCCCCEEEEecCCC---ccCCCCCCChHHHHHHHc-CcEEEEEecCCCCCCchh-----H-HhcccccCCcChHhHHHHH
Q 004368 513 DGSDPLLLYGYGSY---EICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQ-----W-YENGKFLKKKNTFTDFIAC 582 (758)
Q Consensus 513 ~~~~P~vl~~hGg~---~~~~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G~~-----~-~~~~~~~~~~~~~~D~~~~ 582 (758)
+++.||+|++|||. |+...+.|.. ..|+++ +.+|+.+|||-+- +|.= . ........+-..+.|.+.|
T Consensus 136 ~~~lPV~V~ihGG~f~~Gs~~~~~~~~--~~l~~~~~vVvVtinYRlg~-fGFl~~~~~~~~~~~~~~~gN~Gl~Dq~~A 212 (571)
T d1dx4a_ 136 TNGLPILIWIYGGGFMTGSATLDIYNA--DIMAAVGNVIVASFQYRVGA-FGFLHLAPEMPSEFAEEAPGNVGLWDQALA 212 (571)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCC--HHHHHHHTCEEEEECCCCTH-HHHCCCGGGSCGGGTTSSCSCHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCccCCCCcccccch--hhhhhcCCeeEEeecceecc-ccccccccccccccccCCCCcccchHHHHH
Confidence 56789999999983 2333333333 455544 6999999999542 1110 0 0001122344568999999
Q ss_pred HHHHHHc---CCCCCCcEEEEEeChhHHHHHHHHhhC--CCceeEEEEcCCcc
Q 004368 583 AEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFV 630 (758)
Q Consensus 583 ~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~~ 630 (758)
++|+.++ -.-||++|.|+|+|+||..+...+... ..+|+.+|+.++..
T Consensus 213 L~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~ 265 (571)
T d1dx4a_ 213 IRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 265 (571)
T ss_dssp HHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceecccc
Confidence 9999886 335999999999999999988776642 25899999988754
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.28 E-value=9.8e-05 Score=75.00 Aligned_cols=207 Identities=13% Similarity=0.073 Sum_probs=105.9
Q ss_pred eEEECCCCCEEEEEEeC-----CCCeEEEEEEEECCCCceeec-ccc--------CcceeEEEecCC-eEEEEEeCCCCC
Q 004368 195 CFQVSPDNKLVAYAEDT-----KGDEIYTVYVIDIETGTPVGK-PLV--------GVTASVEWAGNE-ALVYITMDEILR 259 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~-----~G~e~~~l~v~dl~~g~~~~~-~~~--------~~~~~~~wspDg-~l~y~~~~~~~~ 259 (758)
.++|||||++|+++... .|.....|++||+++++.+.. ... .....++|+||| .+++.....
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~--- 127 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP--- 127 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS---
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC---
Confidence 57999999999876542 133346799999999987643 111 113457999999 555443221
Q ss_pred CceEEEEEcCCCCCCcEEEeeecCC-c-----eeeEEEEcCCCcEEEEEecCC---------------------------
Q 004368 260 PDKAWLHKLEADQSNDICLYHEKDD-I-----YSLGLQASESKKFLFIASESK--------------------------- 306 (758)
Q Consensus 260 ~~~v~~~~l~~~~~~~~~v~~~~~~-~-----~~~~~~~S~Dg~~l~~~s~~~--------------------------- 306 (758)
...++..+..++. .......... . -...+.+++||+.+++.....
T Consensus 128 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (355)
T d2bbkh_ 128 APAVGVVDLEGKA--FKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 205 (355)
T ss_dssp SCEEEEEETTTTE--EEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT
T ss_pred CceeeeeecCCCc--EeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCC
Confidence 2234445554431 1111110000 0 001234566666665542110
Q ss_pred --------cceEEEEEeCCCCCceEEeeccc-------------cc-eeeEEeecCCEEEEEEcCCC-----CCCcEEEE
Q 004368 307 --------ITRFVFYLDVSKPEELRVLTPRV-------------VG-VDTAASHRGNHFFITRRSDE-----LFNSELLA 359 (758)
Q Consensus 307 --------~~~~l~~~d~~~~~~~~~l~~~~-------------~~-~~~~~s~dg~~l~~~s~~~~-----~~~~~L~~ 359 (758)
....++++++.++. ...+.... .+ ....+++++..+|+...... .....|..
T Consensus 206 ~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v 284 (355)
T d2bbkh_ 206 AGRLVWPTYTGKIHQIDLSSGD-AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 284 (355)
T ss_dssp TTEEEEEBTTSEEEEEECTTSS-CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCeEEEecCCCeEEEEecCCCc-EEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence 12357777777654 32221110 01 12347889998887765431 12346888
Q ss_pred EeCCCCCcceeeecCCCCceeeeEE--EeCCEEEEEEEeCCeeEEEEEEcCCCCC
Q 004368 360 CPVDNTSETTVLIPHRESVKLQDIQ--LFIDHLAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 360 ~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
+|..+.... ..++... .+..+. ++++.+++... .+...|.+|++.. |+
T Consensus 285 ~d~~t~~~~-~~~~~~~--~~~~~a~spDG~~~l~v~~-~~d~~i~v~D~~t-g~ 334 (355)
T d2bbkh_ 285 LDAKTGERL-AKFEMGH--EIDSINVSQDEKPLLYALS-TGDKTLYIHDAES-GE 334 (355)
T ss_dssp EETTTCCEE-EEEEEEE--EECEEEECCSSSCEEEEEE-TTTTEEEEEETTT-CC
T ss_pred EeCCCCcEE-EEecCCC--CEEEEEEcCCCCeEEEEEE-CCCCEEEEEECCC-CC
Confidence 887753222 2222211 233444 45555544443 2234588998874 44
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.27 E-value=1.6e-05 Score=84.20 Aligned_cols=127 Identities=6% Similarity=-0.089 Sum_probs=81.2
Q ss_pred ceEEeecccccCCCCeEEEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEE
Q 004368 175 EHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYIT 253 (758)
Q Consensus 175 ~~vllD~n~~~~~~~~~~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~ 253 (758)
.+++++++.+.. .+.+++|.+.+.+...... .+|.|||+++++.+.. .......+++|||||+.+|+.
T Consensus 11 ~~~~~~~~~~p~--------~~~~~~d~~~~~~V~~~~d---g~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~ 79 (426)
T d1hzua2 11 WKVLVKPEDRPK--------KQLNDLDLPNLFSVTLRDA---GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVI 79 (426)
T ss_dssp CEESSCGGGSCS--------SCCSCCCGGGEEEEEETTT---TEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred heeeCCcccCCC--------cccccCCCCeEEEEEEcCC---CEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEE
Confidence 467777776653 2357888777666544332 3799999999998763 223335669999999666776
Q ss_pred eCCCCCCceEEEEEcCCCCCCcEEEee--ec--CCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC
Q 004368 254 MDEILRPDKAWLHKLEADQSNDICLYH--EK--DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 320 (758)
Q Consensus 254 ~~~~~~~~~v~~~~l~~~~~~~~~v~~--~~--~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~ 320 (758)
..+ ..+.++++.++.. ..+.+ .. ......++.|||||++|++..... ..+.++|..++.
T Consensus 80 ~~d----~~v~vwd~~t~~~--~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~--~~v~i~d~~~~~ 142 (426)
T d1hzua2 80 GRD----ARIDMIDLWAKEP--TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP--PQFAIMDGETLE 142 (426)
T ss_dssp ETT----SEEEEEETTSSSC--EEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES--SEEEEEETTTCC
T ss_pred eCC----CCEEEEEccCCce--eEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC--CeEEEEcCCccc
Confidence 532 2588889887743 22222 11 112234567899999988765433 356677887765
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.27 E-value=0.0002 Score=73.54 Aligned_cols=247 Identities=14% Similarity=0.086 Sum_probs=124.1
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-------------------cCcceeEEEecCCeEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-------------------VGVTASVEWAGNEALVY 251 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-------------------~~~~~~~~wspDg~l~y 251 (758)
.+..++|||||++||-+.| | .|+|||+.+++.... .. ...+..++|+|||.+++
T Consensus 64 ~V~~l~fs~dg~~lasg~d--~----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~ 137 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATGCN--K----TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137 (388)
T ss_dssp CCCEEEECTTSSEEEEECB--S----CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cEEEEEECCCCCEEEEEeC--C----eEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence 4677899999999985432 2 599999998876421 00 11145689999995555
Q ss_pred EEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc
Q 004368 252 ITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG 331 (758)
Q Consensus 252 ~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 331 (758)
+...++ .|..++...+ +....+... ......+.+++++..++..+.. ..+.++|..+.. ..........
T Consensus 138 s~~~dg----~v~i~~~~~~--~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~-~~~~~~~~~~ 206 (388)
T d1erja_ 138 TGAEDR----LIRIWDIENR--KIVMILQGH-EQDIYSLDYFPSGDKLVSGSGD---RTVRIWDLRTGQ-CSLTLSIEDG 206 (388)
T ss_dssp EEETTS----CEEEEETTTT--EEEEEECCC-SSCEEEEEECTTSSEEEEEETT---SEEEEEETTTTE-EEEEEECSSC
T ss_pred eccccc----cccccccccc--ccccccccc-cccccccccccccccccccccc---eeeeeeeccccc-cccccccccc
Confidence 554332 3777777655 222233222 2233467899999988765433 346777887654 2222222222
Q ss_pred -eeeEE-eecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecC-----CCCceeeeEEEeCC-EEEEEEEeCCeeEEE
Q 004368 332 -VDTAA-SHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPH-----RESVKLQDIQLFID-HLAVYEREGGLQKIT 403 (758)
Q Consensus 332 -~~~~~-s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~ 403 (758)
....+ .+++..|+..+. + ..|...+.........+... .....+..+.+..+ .++++...++. +.
T Consensus 207 ~~~~~~~~~~~~~l~~~~~-d----~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~--i~ 279 (388)
T d1erja_ 207 VTTVAVSPGDGKYIAAGSL-D----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS--VK 279 (388)
T ss_dssp EEEEEECSTTCCEEEEEET-T----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE--EE
T ss_pred cccccccCCCCCeEEEEcC-C----CeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCc--EE
Confidence 22233 345665554433 2 34666776542221111111 11223455665543 33345555664 77
Q ss_pred EEEcCCCCCccccccC---C-ceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCcE
Q 004368 404 TYRLPAVGEPLKSLQG---G-KSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 404 v~~l~~~g~~~~~l~~---~-~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~~ 467 (758)
+|++..... ...... . ...........+....++++++.++ +.+. -..|+.+|+.+++.
T Consensus 280 iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-sg~~---dg~i~vwd~~~~~~ 342 (388)
T d1erja_ 280 LWNLQNANN-KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSK---DRGVLFWDKKSGNP 342 (388)
T ss_dssp EEEC----------------CEEEEEECCSSCEEEEEECGGGCEEE-EEET---TSEEEEEETTTCCE
T ss_pred EEeccCCcc-ccccccccccceeeecccccceEEEEEECCCCCEEE-EEeC---CCEEEEEECCCCcE
Confidence 888764211 100000 0 0011111111122344556665543 3322 24788999988873
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.23 E-value=6.9e-05 Score=74.22 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=106.1
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
+..+.+||||+.++...+ ..+.+++.. +............++|+||+.++++...+ ..+..+++.+..
T Consensus 102 ~~~~~~s~~g~~~~~~~~------~~i~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~g~~d----g~i~~~d~~~~~ 169 (299)
T d1nr0a2 102 PLGLAVSADGDIAVAACY------KHIAIYSHG--KLTEVPISYNSSCVALSNDKQFVAVGGQD----SKVHVYKLSGAS 169 (299)
T ss_dssp EEEEEECTTSSCEEEEES------SEEEEEETT--EEEEEECSSCEEEEEECTTSCEEEEEETT----SEEEEEEEETTE
T ss_pred cccccccccccccccccc------ccccccccc--ccccccccccccccccccccccccccccc----cccccccccccc
Confidence 456789999998876654 247777743 33332233334568999999554554432 247777776542
Q ss_pred CCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCce---EEeeccccceee-EEeecCCEEEEEEc
Q 004368 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL---RVLTPRVVGVDT-AASHRGNHFFITRR 348 (758)
Q Consensus 273 ~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~---~~l~~~~~~~~~-~~s~dg~~l~~~s~ 348 (758)
...+...........+.++|++++|+..+.+ ..|+++|+.++... ..+......+.. .|+|+|+.|+..+.
T Consensus 170 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~ 244 (299)
T d1nr0a2 170 --VSEVKTIVHPAEITSVAFSNNGAFLVATDQS---RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244 (299)
T ss_dssp --EEEEEEEECSSCEEEEEECTTSSEEEEEETT---SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred --ccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccceEEEcC
Confidence 1222222223334467899999998765443 24778887765411 112212223333 48999998776554
Q ss_pred CCCCCCcEEEEEeCCCCCcceeeecCC-CCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 349 SDELFNSELLACPVDNTSETTVLIPHR-ESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+ ..|..+++........+.... ....+....+..+..+++...++. |++|+++
T Consensus 245 d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~--i~iWdl~ 298 (299)
T d1nr0a2 245 D-----NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN--IKFWNVP 298 (299)
T ss_dssp T-----SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSC--EEEEECC
T ss_pred C-----CEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCE--EEEEecc
Confidence 3 347777876543333332222 222233333333334455666664 6778764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.20 E-value=7e-05 Score=75.75 Aligned_cols=199 Identities=10% Similarity=0.019 Sum_probs=109.8
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc--cCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
.+..+.|||||++|+....... ..+.+++.++++...... ......++|+|++ .++.+...+. .+.++++
T Consensus 117 ~v~~v~~s~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~----~v~~~d~ 189 (325)
T d1pgua1 117 PISDISWDFEGRRLCVVGEGRD---NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG----SVVFYQG 189 (325)
T ss_dssp CEEEEEECTTSSEEEEEECCSS---CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTT----EEEEEET
T ss_pred cEEEEEECCCCCccceeecccc---ceEEEEeecccccceeeeecccccccccccccccceEEEeeccc----ccccccc
Confidence 3667899999999988764222 347788888887665311 2235668999999 5555554332 4666676
Q ss_pred CCCCCCcEEEee-ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccce---eeE-EeecCCEE
Q 004368 269 EADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV---DTA-ASHRGNHF 343 (758)
Q Consensus 269 ~~~~~~~~~v~~-~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~---~~~-~s~dg~~l 343 (758)
.+... ...+.. .........+.|+||+..++++.... ..|.++|+.+++....+......+ .+. ..+||+.|
T Consensus 190 ~~~~~-~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d--~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l 266 (325)
T d1pgua1 190 PPFKF-SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD--RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 266 (325)
T ss_dssp TTBEE-EEEECSSSCTTCCEEEEEECSTTCCEEEEEETT--CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEE
T ss_pred ccccc-ceecccccCCCCccEEeeeccccceeccccccc--cceeeeeeccccccccccccccccccceeeeeccCCCEE
Confidence 54421 111111 11233345688999864444444333 336777888776233343222222 222 22788877
Q ss_pred EEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCC--ceeeeEEEeCCEEEEEEEeCCeeEEEEEEc
Q 004368 344 FITRRSDELFNSELLACPVDNTSETTVLIPHRES--VKLQDIQLFIDHLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 344 ~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l 407 (758)
+..+.+ ..|..+|+.+......+..+... .....+.+.++..++....+|. |++|++
T Consensus 267 ~s~s~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~--i~vwdl 325 (325)
T d1pgua1 267 ATVGAD-----ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT--LNFYEL 325 (325)
T ss_dssp EEEETT-----SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSC--EEEEET
T ss_pred EEEeCC-----CeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCE--EEEEEC
Confidence 655433 34666787653222223223222 2223456666555567777765 667764
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.20 E-value=0.00016 Score=72.24 Aligned_cols=195 Identities=13% Similarity=0.202 Sum_probs=106.9
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
+.+++++|||+. |..+..+ .+|+.++.++.........+...+++|+|||.++.+..... .++........
T Consensus 30 ~e~iAv~pdG~l--~vt~~~~---~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~----~~~~~~~~~~~ 100 (302)
T d2p4oa1 30 LENLASAPDGTI--FVTNHEV---GEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNAD----SIPVVSLVKSD 100 (302)
T ss_dssp EEEEEECTTSCE--EEEETTT---TEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTT----SCEEEEEECTT
T ss_pred cCCEEECCCCCE--EEEeCCC---CEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCc----eEEEEEecccc
Confidence 668899999995 4455444 36888887654333224455566799999998766655432 23333333322
Q ss_pred CCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc--c------cce--eeEEeecCCE
Q 004368 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR--V------VGV--DTAASHRGNH 342 (758)
Q Consensus 273 ~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~--~------~~~--~~~~s~dg~~ 342 (758)
.....+.......+..++.+.+||+.++.. .....+|.++..++. ....... . ... -..++.+++.
T Consensus 101 ~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~---~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~ 176 (302)
T d2p4oa1 101 GTVETLLTLPDAIFLNGITPLSDTQYLTAD---SYRGAIWLIDVVQPS-GSIWLEHPMLARSNSESVFPAANGLKRFGNF 176 (302)
T ss_dssp SCEEEEEECTTCSCEEEEEESSSSEEEEEE---TTTTEEEEEETTTTE-EEEEEECGGGSCSSTTCCSCSEEEEEEETTE
T ss_pred cceeeccccCCccccceeEEccCCCEEeec---cccccceeeeccCCc-ceeEecCCccceeeccCcccccccccccCCc
Confidence 223334433344444567788999764332 234578888887764 2211111 0 001 1125667888
Q ss_pred EEEEEcCCCCCCcEEEEEeCCCCCcce--eeecCCCCceeeeEEEeCCE-EEEEEEeCCeeEEEEEEcC
Q 004368 343 FFITRRSDELFNSELLACPVDNTSETT--VLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 343 l~~~s~~~~~~~~~L~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~l~v~~l~ 408 (758)
+|+.... +.+|++++.+...... .+.... ..+.++.++.+. |++....++ +|.+++.+
T Consensus 177 l~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~--~~pdgia~d~dG~l~va~~~~~--~V~~i~p~ 237 (302)
T d2p4oa1 177 LYVSNTE----KMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYN--SVVRIAPD 237 (302)
T ss_dssp EEEEETT----TTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTC--CEEEECTT
T ss_pred eeeecCC----CCeEEeccccccccccccccccCC--CCCcceEECCCCCEEEEEcCCC--cEEEECCC
Confidence 8877554 3689999876532211 122211 234577787654 444433333 35555433
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.18 E-value=0.00017 Score=72.18 Aligned_cols=198 Identities=12% Similarity=0.085 Sum_probs=100.4
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-cCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEc
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 268 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l 268 (758)
.|..++|||||++||-.. .+| .|+|||+.+++.... .. ......++|+||+ .++....+.. +...+.
T Consensus 57 ~I~~l~~s~~~~~l~sgs-~Dg----~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~-----i~~~~~ 126 (340)
T d1tbga_ 57 KIYAMHWGTDSRLLVSAS-QDG----KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI-----CSIYNL 126 (340)
T ss_dssp CEEEEEECTTSSEEEEEE-TTT----EEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCC-----EEEEES
T ss_pred CEEEEEECCCCCEEEEEE-CCC----ceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccce-----eecccc
Confidence 467889999999987543 233 699999999987653 22 2235668999999 4544433321 111111
Q ss_pred CCCCC-------------CcE---------EEeeecC--------------------CceeeEEEEcCCCcEEEEEecCC
Q 004368 269 EADQS-------------NDI---------CLYHEKD--------------------DIYSLGLQASESKKFLFIASESK 306 (758)
Q Consensus 269 ~~~~~-------------~~~---------~v~~~~~--------------------~~~~~~~~~S~Dg~~l~~~s~~~ 306 (758)
..... ... ......+ ........+.+++..++....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 204 (340)
T d1tbga_ 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-- 204 (340)
T ss_dssp SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred cccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeec--
Confidence 11100 000 0000000 000112234444444433221
Q ss_pred cceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEE
Q 004368 307 ITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL 385 (758)
Q Consensus 307 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 385 (758)
...|.++|+.+++....+......+.. .|+|+|+.|+..+.+ ..+...++.................+..+.+
T Consensus 205 -d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d-----~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 278 (340)
T d1tbga_ 205 -DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp -TTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred -CceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeecccccccccccccccCceEEEEE
Confidence 234677788776523333333333333 388999977665443 3466677754222111222222334556666
Q ss_pred eCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 386 FID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 386 ~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
..+ .++++...+|. +++|++..
T Consensus 279 s~~~~~l~~g~~dg~--i~iwd~~~ 301 (340)
T d1tbga_ 279 SKSGRLLLAGYDDFN--CNVWDALK 301 (340)
T ss_dssp CSSSCEEEEEETTSC--EEEEETTT
T ss_pred CCCCCEEEEEECCCE--EEEEECCC
Confidence 553 34445556664 77888863
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.15 E-value=0.00054 Score=67.05 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=87.5
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cc-cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.|..++|||||++||-+. .+| .|+|||+.+++.... .. .+....+.|+|++.+++...... .+...+..
T Consensus 19 ~I~~l~~sp~~~~l~s~s-~Dg----~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 89 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSAS-EDA----TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM----TIKLWDFQ 89 (317)
T ss_dssp CEEEEEECSSSSEEEEEE-SSS----CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS----CCCEEETT
T ss_pred CeEEEEEcCCCCEEEEEe-CCC----eEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc----cccccccc
Confidence 477889999999987443 233 699999999887652 11 22356689999994444443322 12233333
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee-eEEeecCCEEEEEEc
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRR 348 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~ 348 (758)
.. +....+... ........+++++.+++....+ ..+.++|+.++.....+........ ..+++++..|+..+.
T Consensus 90 ~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (317)
T d1vyhc1 90 GF--ECIRTMHGH-DHNVSSVSIMPNGDHIVSASRD---KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 163 (317)
T ss_dssp SS--CEEECCCCC-SSCEEEEEECSSSSEEEEEETT---SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred cc--ccccccccc-cccceeeeccCCCceEEeeccC---cceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeC
Confidence 32 122222222 2233456799999998765433 3456778877652333333322222 347888887765544
Q ss_pred CCCCCCcEEEEEeCCC
Q 004368 349 SDELFNSELLACPVDN 364 (758)
Q Consensus 349 ~~~~~~~~L~~~~~~~ 364 (758)
. ..+...++..
T Consensus 164 d-----~~v~~~~~~~ 174 (317)
T d1vyhc1 164 D-----QTVRVWVVAT 174 (317)
T ss_dssp T-----SCEEEEETTT
T ss_pred C-----CeEEEEeecc
Confidence 3 2345555443
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.13 E-value=9.4e-06 Score=69.12 Aligned_cols=97 Identities=12% Similarity=0.020 Sum_probs=65.6
Q ss_pred eCCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccC
Q 004368 492 SASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK 571 (758)
Q Consensus 492 ~s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~ 571 (758)
..-+|.+|.... .++-|.||++||... .+.+ .+.++|.|+.+|.||.|.+...
T Consensus 6 ~~~~G~~l~y~~---------~G~G~pvlllHG~~~-~w~~--------~L~~~yrvi~~DlpG~G~S~~p--------- 58 (122)
T d2dsta1 6 LHLYGLNLVFDR---------VGKGPPVLLVAEEAS-RWPE--------ALPEGYAFYLLDLPGYGRTEGP--------- 58 (122)
T ss_dssp EEETTEEEEEEE---------ECCSSEEEEESSSGG-GCCS--------CCCTTSEEEEECCTTSTTCCCC---------
T ss_pred EEECCEEEEEEE---------EcCCCcEEEEecccc-cccc--------cccCCeEEEEEeccccCCCCCc---------
Confidence 344777765431 245688889998432 2221 2457999999999999876321
Q ss_pred CcChHhHHHHHHHHHHHcCCCCCCcEEEEEeChhHHHHHHHHhhCCC
Q 004368 572 KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD 618 (758)
Q Consensus 572 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~ 618 (758)
..+.+++.+.+..+++.- +-++..++|+|+||.++..+++..+.
T Consensus 59 -~~s~~~~a~~i~~ll~~L--~i~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 59 -RMAPEELAHFVAGFAVMM--NLGAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp -CCCHHHHHHHHHHHHHHT--TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred -ccccchhHHHHHHHHHHh--CCCCcEEEEeCccHHHHHHHHhhccc
Confidence 234566666665555542 34788999999999999998887654
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=98.13 E-value=1.2e-06 Score=87.70 Aligned_cols=196 Identities=12% Similarity=0.034 Sum_probs=100.8
Q ss_pred CCCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHH-HHHHHHcCC
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC-AEYLIKNCY 591 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~ 591 (758)
.+..|.|+++||.........|......|. .++.|+.++++|.|...... ......+++++.+. ++.+....
T Consensus 57 ~~~~~~l~c~~~~~~~g~~~~y~~la~~L~-~~~~V~al~~pG~~~~~~~~-----~~~~~~s~~~~a~~~~~~i~~~~- 129 (283)
T d2h7xa1 57 AEGRAVLVGCTGTAANGGPHEFLRLSTSFQ-EERDFLAVPLPGYGTGTGTG-----TALLPADLDTALDAQARAILRAA- 129 (283)
T ss_dssp -CCCCEEEEECCCCTTCSTTTTHHHHHTTT-TTCCEEEECCTTCCBC---C-----BCCEESSHHHHHHHHHHHHHHHH-
T ss_pred CCCCceEEEeCCCCCCCCHHHHHHHHHhcC-CCceEEEEeCCCCCCCCCCc-----cccccCCHHHHHHHHHHHHHHhc-
Confidence 345788999998543333344554444443 47899999999987533210 11122355666553 34444321
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhC----CCceeEEEEcCCccchhhccCCCCCCCChhhh--hccCCCCCHH---HHHH
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMR----PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW--EEWGDPWKEE---FYFY 662 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~--~e~g~p~~~~---~~~~ 662 (758)
....+.++|||+||.++..++.+. ++..+++|+..+..-................. .+.....+.. ...+
T Consensus 130 -~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~ 208 (283)
T d2h7xa1 130 -GDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRY 208 (283)
T ss_dssp -TTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTCCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred -CCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCCccccccchhhhhhhhHHHhhcccccccccHHHHHHHHH
Confidence 236799999999999998888764 44567777655432100000000000000000 0111111111 1111
Q ss_pred HHhcCcccccCCCCCCeEEEeccCCCCCCCChHHHHHHHHHHhcCCCCceEEEEecCCCCCCC
Q 004368 663 MKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 725 (758)
Q Consensus 663 l~~~sp~~~i~~~~~P~~Li~~G~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~ 725 (758)
++.+ ......++++| +|+++|++|..++......+.+.+ ....+.+.+ .++|+.
T Consensus 209 ~~~~-~~~~~~~~~~P-vl~i~g~~d~~~~~~~~~~w~~~~---~~~~~~~~v----~G~H~~ 262 (283)
T d2h7xa1 209 ARFL-AGPRPGRSSAP-VLLVRASEPLGDWQEERGDWRAHW---DLPHTVADV----PGDHFT 262 (283)
T ss_dssp HHHH-HSCCCCCCCSC-EEEEEESSCSSCCCGGGCCCSCCC---SSCSEEEEE----SSCTTH
T ss_pred HHHH-hhccccccCCC-eEEEEeCCCCCCCHHHHHHHHHhC---CCCcEEEEE----cCCCcc
Confidence 1111 11223456888 999999999999987665443221 223445555 358863
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.10 E-value=0.00023 Score=73.19 Aligned_cols=196 Identities=15% Similarity=0.115 Sum_probs=102.8
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-ccc---CcceeEEEecCCeEEEEEeCCCCCCceEEEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHK 267 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~---~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~ 267 (758)
.+..+.|||||++||-... + ..|+|||+.+++.... .+. .....+.|+||+..+++...+ +.-.+|..+
T Consensus 53 ~V~~l~fsp~~~~l~s~s~-D----~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d--~~i~i~~~~ 125 (371)
T d1k8kc_ 53 QVTGVDWAPDSNRIVTCGT-D----RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--RVISICYFE 125 (371)
T ss_dssp CEEEEEEETTTTEEEEEET-T----SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT--SSEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEC-C----CeEEEEeecccccccccccccccccccccccccccccceeeccc--Ccceeeeee
Confidence 4678899999999875432 3 3699999988765432 222 235668999999444444332 222344444
Q ss_pred cCCCCCCcEEEee-ecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC---c------------eEEeec---c
Q 004368 268 LEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE---E------------LRVLTP---R 328 (758)
Q Consensus 268 l~~~~~~~~~v~~-~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~---~------------~~~l~~---~ 328 (758)
-... ....... .........+.|+|||++|+..+.+ +. +.++++.... . ...+.. .
T Consensus 126 ~~~~--~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D-~~--v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (371)
T d1k8kc_ 126 QEND--WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-FK--CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS 200 (371)
T ss_dssp TTTT--EEEEEEECTTCCSCEEEEEECTTSSEEEEEETT-SC--EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred cccc--cccccccccccccccccccccccccceeccccC-cE--EEEEeeccCccccccccccccccccceeeeeeccCc
Confidence 3322 1121211 1122234468899999998654433 22 3444443221 0 001111 1
Q ss_pred cccee-eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEE
Q 004368 329 VVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYR 406 (758)
Q Consensus 329 ~~~~~-~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~ 406 (758)
...+. ..|+|+|+.|+..+.+ ..|...|+........+..+.. .+..+.+..+.-++..-.++...++.++
T Consensus 201 ~~~v~~~~~s~~g~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~--~v~s~~fs~d~~~la~g~d~~~~~~~~~ 272 (371)
T d1k8kc_ 201 CGWVHGVCFSANGSRVAWVSHD-----STVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAGHDCFPVLFTYD 272 (371)
T ss_dssp SSCEEEEEECSSSSEEEEEETT-----TEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEETTSSCEEEEEE
T ss_pred cCcEEEEEeecccccccccccC-----CcceEEeeecccceeeeecccc--cceeeeecCCCCEEEEEcCCceEEEEee
Confidence 11122 2489999988776543 4577778765322222333332 3455555544333344445655555454
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.09 E-value=8.9e-05 Score=76.35 Aligned_cols=204 Identities=11% Similarity=0.015 Sum_probs=109.1
Q ss_pred eEEECCCCCEEEEEEeC-----CCCeEEEEEEEECCCCceeec-ccc-------C-cceeEEEecCC-eEEEEEeCCCCC
Q 004368 195 CFQVSPDNKLVAYAEDT-----KGDEIYTVYVIDIETGTPVGK-PLV-------G-VTASVEWAGNE-ALVYITMDEILR 259 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~-----~G~e~~~l~v~dl~~g~~~~~-~~~-------~-~~~~~~wspDg-~l~y~~~~~~~~ 259 (758)
.+.|||||++|++.... .|+....|+++|+.+++.+.. .++ + ....++||||| .+++...+
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~---- 144 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG---- 144 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS----
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC----
Confidence 57899999999988652 355567899999999987643 211 1 12358999999 56554333
Q ss_pred CceEEEEEcCCCCCCcEEEeeecC-Cce-----eeEEEEcCCCcEEEEEecCC---------------------------
Q 004368 260 PDKAWLHKLEADQSNDICLYHEKD-DIY-----SLGLQASESKKFLFIASESK--------------------------- 306 (758)
Q Consensus 260 ~~~v~~~~l~~~~~~~~~v~~~~~-~~~-----~~~~~~S~Dg~~l~~~s~~~--------------------------- 306 (758)
+..++++++.+.. .......+. ... ...+..++||+.+++.....
T Consensus 145 ~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (368)
T d1mdah_ 145 SSAAAGLSVPGAS--DDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP 222 (368)
T ss_dssp SSCEEEEEETTTE--EEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred CCeEEEEECCCCc--EeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC
Confidence 2347777776652 122211111 000 01234577777666653221
Q ss_pred ------cceEEEEEeCCCCCceEEeeccc-------------cc-eeeEEeecCCEEEEEEcCCC----CCCcEEEEEeC
Q 004368 307 ------ITRFVFYLDVSKPEELRVLTPRV-------------VG-VDTAASHRGNHFFITRRSDE----LFNSELLACPV 362 (758)
Q Consensus 307 ------~~~~l~~~d~~~~~~~~~l~~~~-------------~~-~~~~~s~dg~~l~~~s~~~~----~~~~~L~~~~~ 362 (758)
...+++.++..... ...+.... .+ ....++++++.+|+....+. ....+|+.+|.
T Consensus 223 g~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~ 301 (368)
T d1mdah_ 223 GMLVWAVASSILQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301 (368)
T ss_dssp TEEEECBSSCCEEEECCSSC-CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred cEEEEecCCCEEEEeecCCc-eEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence 11235666665543 22211100 01 12347889998887765431 12346888888
Q ss_pred CCCCcceeeecCCCCceeee--EEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 363 DNTSETTVLIPHRESVKLQD--IQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 363 ~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
.+... ...++.. ..+.. ++++++.+++.... +...|++|+...
T Consensus 302 ~t~~~-~~~~~~~--~~~~~~a~spDG~~~ly~s~~-~~~~v~v~D~~t 346 (368)
T d1mdah_ 302 SVGQT-SGPISNG--HDSDAIIAAQDGASDNYANSA-GTEVLDIYDAAS 346 (368)
T ss_dssp SSCCE-EECCEEE--EEECEEEECCSSSCEEEEEET-TTTEEEEEESSS
T ss_pred CCCcE-eEEecCC--CceeEEEECCCCCEEEEEEeC-CCCeEEEEECCC
Confidence 76321 1112211 12333 44455555444432 224588998764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.03 E-value=7.4e-05 Score=75.54 Aligned_cols=200 Identities=12% Similarity=0.049 Sum_probs=104.8
Q ss_pred EEEeeEEECC--CCCEEEEEEeCCCCeEEEEEEEECCCCceeec----------cccCcceeEEEecCC-eEEEEEeCCC
Q 004368 191 YSVGCFQVSP--DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK----------PLVGVTASVEWAGNE-ALVYITMDEI 257 (758)
Q Consensus 191 ~~i~~~~~SP--DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~----------~~~~~~~~~~wspDg-~l~y~~~~~~ 257 (758)
..+..++||| ||++||- .+.+| +|.|||+..++.... ...+....++|++|| .++....+..
T Consensus 64 ~~v~~v~fsP~~~g~~las-gs~Dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~ 138 (325)
T d1pgua1 64 SVVTTVKFSPIKGSQYLCS-GDESG----KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138 (325)
T ss_dssp SCEEEEEECSSTTCCEEEE-EETTS----EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred CCEEEEEEeeCCCCCEEEE-EeCCC----CEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecccc
Confidence 3467789998 5677763 33334 688998876543211 111224568999999 6655553322
Q ss_pred CCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc---cccee-
Q 004368 258 LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR---VVGVD- 333 (758)
Q Consensus 258 ~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~---~~~~~- 333 (758)
..+......++ +....+... .....++.|+|++.+++++....+ .+.++|....+....+... ...+.
T Consensus 139 ---~~~~~~~~~~~--~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~d~--~v~~~d~~~~~~~~~~~~~~~~~~~v~~ 210 (325)
T d1pgua1 139 ---NFGVFISWDSG--NSLGEVSGH-SQRINACHLKQSRPMRSMTVGDDG--SVVFYQGPPFKFSASDRTHHKQGSFVRD 210 (325)
T ss_dssp ---CSEEEEETTTC--CEEEECCSC-SSCEEEEEECSSSSCEEEEEETTT--EEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred ---ceEEEEeeccc--ccceeeeec-ccccccccccccccceEEEeeccc--ccccccccccccceecccccCCCCccEE
Confidence 22445555554 222233222 223346789999998777655444 3555676654411122111 11122
Q ss_pred eEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEE--EeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 334 TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQ--LFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 334 ~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
..|+|++..+++....+ ..|..+|+.+......+..+.....-..++ +..+.++++...++. ++||++..
T Consensus 211 v~~~pd~~~~l~s~~~d----~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~--i~iwd~~~ 282 (325)
T d1pgua1 211 VEFSPDSGEFVITVGSD----RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT--IRVWDVTT 282 (325)
T ss_dssp EEECSTTCCEEEEEETT----CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE--EEEEETTT
T ss_pred eeeccccceeccccccc----cceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe--EEEEECCC
Confidence 24889866555554444 346667876532222232222222111233 333344456666765 77888873
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.02 E-value=0.0024 Score=64.80 Aligned_cols=59 Identities=19% Similarity=0.095 Sum_probs=40.4
Q ss_pred eEEECCCCCEEEEEEeCC-----CCeEEEEEEEECCCCceeec-cccC--------cceeEEEecCC-eEEEEE
Q 004368 195 CFQVSPDNKLVAYAEDTK-----GDEIYTVYVIDIETGTPVGK-PLVG--------VTASVEWAGNE-ALVYIT 253 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~-----G~e~~~l~v~dl~~g~~~~~-~~~~--------~~~~~~wspDg-~l~y~~ 253 (758)
.+.|||||++|++..... +.....|.|+|+.+++.+.. .... ....+.|++|| .+++..
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~ 143 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ 143 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEE
Confidence 579999999999986543 23345799999999987643 1111 12447899999 554443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.86 E-value=0.0026 Score=62.88 Aligned_cols=225 Identities=10% Similarity=0.021 Sum_probs=126.7
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSN 274 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~ 274 (758)
++.|.++...|.|+ |..+ ..|+.+|+++++......+...+.+++.+||.+++... ..+++.+..++.
T Consensus 22 gp~wd~~~~~l~wv-Di~~---~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~~------~gl~~~d~~tg~-- 89 (295)
T d2ghsa1 22 GPTFDPASGTAWWF-NILE---RELHELHLASGRKTVHALPFMGSALAKISDSKQLIASD------DGLFLRDTATGV-- 89 (295)
T ss_dssp EEEEETTTTEEEEE-EGGG---TEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEET------TEEEEEETTTCC--
T ss_pred CCeEECCCCEEEEE-ECCC---CEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEEe------CccEEeecccce--
Confidence 68999988888665 4333 36999999999876555555566789999997766542 248888887763
Q ss_pred cEEEeee-cC-Cc-eeeEEEEcCCCcEEEEEecC----CcceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEEE
Q 004368 275 DICLYHE-KD-DI-YSLGLQASESKKFLFIASES----KITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFIT 346 (758)
Q Consensus 275 ~~~v~~~-~~-~~-~~~~~~~S~Dg~~l~~~s~~----~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~ 346 (758)
...+... .+ +. ..-++...++|+. ++.... .....+|.++ +++ .+.+...... -...|+++++.+|+.
T Consensus 90 ~~~l~~~~~~~~~~~~nd~~vd~~G~i-w~~~~~~~~~~~~g~l~~~~--~g~-~~~~~~~~~~~Ng~~~s~d~~~l~~~ 165 (295)
T d2ghsa1 90 LTLHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVA--KGK-VTKLFADISIPNSICFSPDGTTGYFV 165 (295)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEE--TTE-EEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred eeEEeeeecCCCcccceeeEECCCCCE-EEEeccccccccceeEeeec--CCc-EEEEeeccCCcceeeecCCCceEEEe
Confidence 2333221 11 11 2335678999985 444322 1224556554 343 4444432211 123489999999887
Q ss_pred EcCCCCCCcEEEEEeCCCCC----ccee--eecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCCccccccC
Q 004368 347 RRSDELFNSELLACPVDNTS----ETTV--LIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQG 419 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~~~~----~~~~--l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~ 419 (758)
-... .+|++++++... .... +..........++..+.+ .|++.....+ .|.+|+. +|+.+
T Consensus 166 dt~~----~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g--~V~~~dp--~G~~~----- 232 (295)
T d2ghsa1 166 DTKV----NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG--AVDRYDT--DGNHI----- 232 (295)
T ss_dssp ETTT----CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT--EEEEECT--TCCEE-----
T ss_pred eccc----ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC--ceEEecC--CCcEe-----
Confidence 6543 578888765311 1111 222333445677888765 5554444444 3555653 46644
Q ss_pred CceeeccCcccccCCCCc-ccCCcEEEEEEecC
Q 004368 420 GKSVEFIDPVYSIDPSES-VFSSRILRFHYSSL 451 (758)
Q Consensus 420 ~~~i~~p~~~~~i~~~~~-~~d~~~l~~~~sS~ 451 (758)
..+.+|.+. ++...+ -++.++|+++..+.
T Consensus 233 -~~i~lP~~~--~T~~~FGG~d~~~LyvTta~~ 262 (295)
T d2ghsa1 233 -ARYEVPGKQ--TTCPAFIGPDASRLLVTSARE 262 (295)
T ss_dssp -EEEECSCSB--EEEEEEESTTSCEEEEEEBCT
T ss_pred -eEecCCCCc--eEEEEEeCCCCCEEEEEECCc
Confidence 455555431 111111 14567787765543
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.75 E-value=0.013 Score=52.65 Aligned_cols=234 Identities=18% Similarity=0.120 Sum_probs=131.5
Q ss_pred EECCCCCEEEEEEeC-CCCeEEEEEEEECC-CCceeeccccC-c-ceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCC
Q 004368 197 QVSPDNKLVAYAEDT-KGDEIYTVYVIDIE-TGTPVGKPLVG-V-TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~-~G~e~~~l~v~dl~-~g~~~~~~~~~-~-~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
..-+.=.+|.|..|. .|.|...|++.+++ .|+..+...+. + ..+. .-|+ .++|+...+. ++.++.+..+
T Consensus 61 ~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~vRI~S~--~yddk~vvF~Gased----~~~LYviegG 134 (313)
T d2hu7a1 61 DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSG--VDTGEAVVFTGATED----RVALYALDGG 134 (313)
T ss_dssp EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCSBEEEEE--EECSSCEEEEEECSS----CEEEEEEETT
T ss_pred CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCceEEEEEe--eecCceEEEecccCC----ceEEEEEeCC
Confidence 444555678888874 58889999999997 35555543333 2 3333 3477 7999876432 2555555555
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEe-cCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEEcC
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIAS-ESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRRS 349 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s-~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~ 349 (758)
. -..+..-+.-.|..+ . .|++|+-.. -..+...+++.|+.++. ++.+++.+..+.. +.+++.+ + .++.
T Consensus 135 k--lrkL~~vPpFsFVtD--I--~~d~I~G~g~~~g~~~sfF~adl~SG~-lri~tpkeGS~~~ay~~~gnK-V--~sdy 204 (313)
T d2hu7a1 135 G--LRELARLPGFGFVSD--I--RGDLIAGLGFFGGGRVSLFTSNLSSGG-LRVFDSGEGSFSSASISPGMK-V--TAGL 204 (313)
T ss_dssp E--EEEEEEESSCEEEEE--E--ETTEEEEEEEEETTEEEEEEEETTTEE-EEEECCSSEEEEEEEECTTSC-E--EEEE
T ss_pred c--eeeeccCCCcceEEe--c--cCCeEEEEeeecCCcceEEEEecccCC-EEEecCCCCcccceeEccCce-e--eecc
Confidence 2 222322222222222 2 355665332 23344568999998776 8888887655443 3566555 3 2222
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCce--eeeEEE---eC-CEEEEEEEeCCeeEEEEEEcCCCCCccccccCCcee
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVK--LQDIQL---FI-DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 423 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~--~~~~~~---~~-~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i 423 (758)
.......+..+|..+..-.+.-+|..+-.. ...+.| +. +.|++.++++|.+.+. ++ |+ .+
T Consensus 205 Et~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF---~n--Gk---------~i 270 (313)
T d2hu7a1 205 ETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVF---ID--GE---------RV 270 (313)
T ss_dssp EESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEE---ET--TE---------EE
T ss_pred CCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchhee---ec--ce---------Ee
Confidence 112234555677765222222344432111 223333 33 5688899999998865 33 43 34
Q ss_pred eccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCCc
Q 004368 424 EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 466 (758)
Q Consensus 424 ~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~~ 466 (758)
.-| .+.+.+. ..-++.++|+.+|..+|+.+..+ .+|+
T Consensus 271 n~p--~G~~~ga--t~i~~~iyfshsSL~tP~kI~~~--~~~~ 307 (313)
T d2hu7a1 271 EAP--QGNHGRV--VLWRGKLVTSHTSLSTPPRIVSL--PSGE 307 (313)
T ss_dssp CCC--SSEEEEE--EEETTEEEEEEEETTEEEEEEEE--TTCC
T ss_pred cCC--CCcccce--EEECCEEEEeecccCCCceeEEc--CCCC
Confidence 322 2233222 22356899999999999998765 4554
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.74 E-value=0.0037 Score=65.44 Aligned_cols=218 Identities=10% Similarity=0.016 Sum_probs=122.2
Q ss_pred ceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCC----------
Q 004368 238 TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK---------- 306 (758)
Q Consensus 238 ~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~---------- 306 (758)
..++.+|||| .++|.....+.+.+.|+..++.++..-+. .+... . ..++.|++|++.|+++....
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~i~~~--~-~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~ 202 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VLERV--K-FSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EEEEE--C-SCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-ccccc--c-ccceEEcCCCCEEEEEEeccccCccccccc
Confidence 3457889999 88888877777888999999998732111 11111 1 12578999999998876331
Q ss_pred ---cceEEEEEeCCCCC-ceEEeeccccce----eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCc-----cee--e
Q 004368 307 ---ITRFVFYLDVSKPE-ELRVLTPRVVGV----DTAASHRGNHFFITRRSDELFNSELLACPVDNTSE-----TTV--L 371 (758)
Q Consensus 307 ---~~~~l~~~d~~~~~-~~~~l~~~~~~~----~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~-----~~~--l 371 (758)
....||+..+.+.. .-..+....++. ....+.||+++++...........++.+++..... ..+ +
T Consensus 203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 282 (430)
T d1qfma1 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL 282 (430)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEe
Confidence 22478988887765 334444433221 12367899988877665434456788888654211 111 3
Q ss_pred ecCCCCceeeeEEEeCCEEEEEEEeCCe-eEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEec
Q 004368 372 IPHRESVKLQDIQLFIDHLAVYEREGGL-QKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSS 450 (758)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS 450 (758)
+... .....-+...++.+++....++. .+|...+++.... ..+ + .-+|+....+........++.+++.+..
T Consensus 283 ~~~~-~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~--~~w---~-~vi~~~~~~~~~~~~~~~~~~lvl~~~~ 355 (430)
T d1qfma1 283 IDNF-EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE--SKW---K-VLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (430)
T ss_dssp ECSS-SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCG--GGC---E-EEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred eccc-ccceEEEecCCceeecccCcccccceeEEecCCCCcc--ccc---e-EEecccCcceeeeEEEEECCEEEEEEEc
Confidence 3332 22233355567777777665542 3455555542111 000 1 1223221111111123345566666543
Q ss_pred CCCCCEEEEEECCCCcE
Q 004368 451 LRTPPSVYDYDMDMGIS 467 (758)
Q Consensus 451 ~~~P~~i~~~d~~~~~~ 467 (758)
..-++|..+++.+++.
T Consensus 356 -~~~~~l~v~~~~~~~~ 371 (430)
T d1qfma1 356 -DVKNTLQLHDLATGAL 371 (430)
T ss_dssp -TTEEEEEEEETTTCCE
T ss_pred -CCEeEEEEEECCCCcE
Confidence 3445688888888774
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=9.2e-06 Score=79.60 Aligned_cols=91 Identities=14% Similarity=0.029 Sum_probs=56.2
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHc-CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHH-HHHHHHHcCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIA-CAEYLIKNCY 591 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~ 591 (758)
.+.| ||++||+.++... | ..|+.+ ++.|+.+|.+|.|.... ++++.+ .++.+.+.
T Consensus 24 ~~~P-l~l~Hg~~gs~~~--~----~~l~~~L~~~v~~~d~~g~~~~~~--------------~~~~a~~~~~~~~~~-- 80 (286)
T d1xkta_ 24 SERP-LFLVHPIEGSTTV--F----HSLASRLSIPTYGLQCTRAAPLDS--------------IHSLAAYYIDCIRQV-- 80 (286)
T ss_dssp CSCC-EEEECCTTCCCGG--G----HHHHHTCSSCEEEECCCTTSCCSC--------------HHHHHHHHHHHHHHH--
T ss_pred CCCe-EEEECCCCccHHH--H----HHHHHHcCCeEEEEeCCCCCCCCC--------------HHHHHHHHHHHHHHh--
Confidence 3456 6688997776432 3 334432 78999999999876431 223222 22223332
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcC
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV 627 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 627 (758)
...+++.++|||+||.++..++.++|++...++...
T Consensus 81 ~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~ 116 (286)
T d1xkta_ 81 QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHN 116 (286)
T ss_dssp CCSSCCEEEEETHHHHHHHHHHHHHHHC------CC
T ss_pred cCCCceEEeecCCccHHHHHHHHHHHHcCCCceeEE
Confidence 234789999999999999999999999877766544
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.67 E-value=0.003 Score=62.63 Aligned_cols=52 Identities=13% Similarity=0.041 Sum_probs=34.5
Q ss_pred EECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEE
Q 004368 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYIT 253 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~ 253 (758)
.+++||++||-+. .+| .|+|||+.+++.+.. . -.+.+..++|+||+.|+-..
T Consensus 18 c~~~~~~~l~tgs-~Dg----~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s 71 (355)
T d1nexb2 18 CLQFEDNYVITGA-DDK----MIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGS 71 (355)
T ss_dssp EEEEETTEEEEEE-TTT----EEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEE
T ss_pred EEEECCCEEEEEe-CCC----eEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEe
Confidence 3577899887443 333 699999999987652 1 12335668999987554333
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.65 E-value=0.021 Score=57.53 Aligned_cols=195 Identities=11% Similarity=0.023 Sum_probs=103.7
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccc--cCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
.+..+.|||||++|+-... +| .|+++|..+++...... ......+.|++++..+++.... ..+..+++.
T Consensus 123 ~V~~l~~s~~~~~l~s~~~-dg----~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~----~~i~~~d~~ 193 (388)
T d1erja_ 123 YIRSVCFSPDGKFLATGAE-DR----LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD----RTVRIWDLR 193 (388)
T ss_dssp BEEEEEECTTSSEEEEEET-TS----CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETT
T ss_pred CEEEEEECCCCCcceeccc-cc----ccccccccccccccccccccccccccccccccccccccccc----eeeeeeecc
Confidence 4778899999999986543 33 59999999888765321 2235568999999433444322 246677776
Q ss_pred CCCCCcEEEeeecCCceeeEEE-EcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-------ccccee-eEEeecC
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQ-ASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-------RVVGVD-TAASHRG 340 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~-~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-------~~~~~~-~~~s~dg 340 (758)
+.. ........ .....+. +.+|+++|+..+.+ ..|++++..++.....+.. ....+. ..|+++|
T Consensus 194 ~~~--~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 266 (388)
T d1erja_ 194 TGQ--CSLTLSIE--DGVTTVAVSPGDGKYIAAGSLD---RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 266 (388)
T ss_dssp TTE--EEEEEECS--SCEEEEEECSTTCCEEEEEETT---SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred ccc--cccccccc--cccccccccCCCCCeEEEEcCC---CeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC
Confidence 541 22222222 2222333 45588887765433 3477888877652222211 111222 2488999
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCCCCCcce----------eeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 341 NHFFITRRSDELFNSELLACPVDNTSETT----------VLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
+.|+..+.+ ..|..+++....... ..........+..+.+..+ .++++...+|. +++|++..
T Consensus 267 ~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~--i~vwd~~~ 339 (388)
T d1erja_ 267 QSVVSGSLD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG--VLFWDKKS 339 (388)
T ss_dssp SEEEEEETT-----SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE--EEEEETTT
T ss_pred CEEEEEECC-----CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE--EEEEECCC
Confidence 977655443 345555654321100 0111111223445555432 34445566664 77898874
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.65 E-value=0.00084 Score=69.90 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=37.6
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCc--ceeEEEecCCe
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV--TASVEWAGNEA 248 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~--~~~~~wspDg~ 248 (758)
.++....+||||+| |..+... .+|.++|+++++.... .++.. ..+++++|||+
T Consensus 73 ~~s~t~gtpDGr~l-fV~d~~~---~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~ 128 (441)
T d1qnia2 73 HISMTDGRYDGKYL-FINDKAN---TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPK 128 (441)
T ss_dssp EEEEETTEEEEEEE-EEEETTT---TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSB
T ss_pred CcceecccCCCCEE-EEEcCCC---CEEEEEECCCCcEeeEEecCCCCCccceEEeccCC
Confidence 34444568999997 6666554 3789999999987654 44433 45589999993
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.65 E-value=0.00013 Score=71.06 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=59.1
Q ss_pred CCCCCEEEEecCCCccCCCC-CCChHHHHHHHc--CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHc
Q 004368 513 DGSDPLLLYGYGSYEICNDP-AFNSSRLSLLDR--GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 589 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~-~~~~~~~~l~~~--G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 589 (758)
..+.|+| ++||-.+.+..+ .+......+.++ |+.|..+++..... .....+. ...+.+.++.+...+++
T Consensus 3 ~~P~PVV-LvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~~~~---~~~~~~~----~~~~~~~~e~v~~~I~~ 74 (279)
T d1ei9a_ 3 PAPLPLV-IWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLR---EDVENSF----FLNVNSQVTTVCQILAK 74 (279)
T ss_dssp TSSCCEE-EECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSSSHH---HHHHHHH----HSCHHHHHHHHHHHHHS
T ss_pred CCCCcEE-EECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCCCcc---cccccch----hhhHHHHHHHHHHHHHh
Confidence 3466754 679955444333 233333344444 88898888643221 1111111 01133444443333333
Q ss_pred CCCCCCcEEEEEeChhHHHHHHHHhhCCC-ceeEEEEcC
Q 004368 590 CYCTKEKLCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAV 627 (758)
Q Consensus 590 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~ 627 (758)
-..-.+++-++|||+||+++=+++.++++ ..+..|..+
T Consensus 75 ~~~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLg 113 (279)
T d1ei9a_ 75 DPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVG 113 (279)
T ss_dssp CGGGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEES
T ss_pred ccccccceeEEEEccccHHHHHHHHHcCCCCcceEEEEC
Confidence 22234689999999999999999998875 355555443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.60 E-value=0.0073 Score=60.08 Aligned_cols=242 Identities=7% Similarity=0.059 Sum_probs=122.7
Q ss_pred EeeEEECCCCCEEEEEEeCCC----CeEEEEEEEECCCCceeeccc------cCcceeEEEecCCeEEEEEeCCCCCCce
Q 004368 193 VGCFQVSPDNKLVAYAEDTKG----DEIYTVYVIDIETGTPVGKPL------VGVTASVEWAGNEALVYITMDEILRPDK 262 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G----~e~~~l~v~dl~~g~~~~~~~------~~~~~~~~wspDg~l~y~~~~~~~~~~~ 262 (758)
..++.|.|||+... .+..+ ....+|+.+|.+++....... .+...++++.+||.++|+.... ..
T Consensus 20 ~EGpa~d~dG~ly~--~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~----~~ 93 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYI--VAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----LG 93 (314)
T ss_dssp CEEEEECTTSCEEE--EETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT----TE
T ss_pred CeEeEEeCCCCEEE--EECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC----Ce
Confidence 34689999998543 33222 112369999999987653211 1123468999999555665422 24
Q ss_pred EEEEEcCCCCCCcEEEeeecCCc-e--eeEEEEcCCCcEEEEEecC-------------CcceEEEEEeCCCCCceEEee
Q 004368 263 AWLHKLEADQSNDICLYHEKDDI-Y--SLGLQASESKKFLFIASES-------------KITRFVFYLDVSKPEELRVLT 326 (758)
Q Consensus 263 v~~~~l~~~~~~~~~v~~~~~~~-~--~~~~~~S~Dg~~l~~~s~~-------------~~~~~l~~~d~~~~~~~~~l~ 326 (758)
+++.+..+. ...++....+.. + --++.+.+||+. +|+... .....||.++.++. ...+.
T Consensus 94 i~~~~~~g~--~~~~~~~~~~g~~~~~pndl~~d~~G~l-yvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~--~~~~~ 168 (314)
T d1pjxa_ 94 LLVVQTDGT--FEEIAKKDSEGRRMQGCNDCAFDYEGNL-WITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ--MIQVD 168 (314)
T ss_dssp EEEEETTSC--EEECCSBCTTSCBCBCCCEEEECTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC--EEEEE
T ss_pred EEEEeCCCc--EEEEEeccccccccCCCcEEEECCCCCE-EEecCccCcccccccceeccCCceEEEEeecCc--eeEee
Confidence 777676543 112222221211 1 124678899964 554321 12347999987653 33333
Q ss_pred ccccc-eeeEEeecCC----EEEEEEcCCCCCCcEEEEEeCCCCCcce--ee---ecCCCCceeeeEEEeCC-EEEEEEE
Q 004368 327 PRVVG-VDTAASHRGN----HFFITRRSDELFNSELLACPVDNTSETT--VL---IPHRESVKLQDIQLFID-HLAVYER 395 (758)
Q Consensus 327 ~~~~~-~~~~~s~dg~----~l~~~s~~~~~~~~~L~~~~~~~~~~~~--~l---~~~~~~~~~~~~~~~~~-~l~~~~~ 395 (758)
..... -...|+++++ .||+.-. .+.+|++++++..+... .+ ++........++.++.+ .|++...
T Consensus 169 ~~~~~pNGi~~~~d~d~~~~~lyv~d~----~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~ 244 (314)
T d1pjxa_ 169 TAFQFPNGIAVRHMNDGRPYQLIVAET----PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEET----TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred CCcceeeeeEECCCCCcceeEEEEEee----cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc
Confidence 22111 1223777664 4555432 24689888875432211 12 12222234567888765 4544433
Q ss_pred eCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECC
Q 004368 396 EGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMD 463 (758)
Q Consensus 396 ~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~ 463 (758)
.. .+|.+++.+ ++.+ ...+..|.. ...+..+.+|+++++++-+ .-.+||++++.
T Consensus 245 ~~--g~I~~~dp~--~g~~-----~~~i~~p~~--~~t~~afg~d~~~lyVt~~---~~g~i~~~~~~ 298 (314)
T d1pjxa_ 245 GS--SHIEVFGPD--GGQP-----KMRIRCPFE--KPSNLHFKPQTKTIFVTEH---ENNAVWKFEWQ 298 (314)
T ss_dssp TT--TEEEEECTT--CBSC-----SEEEECSSS--CEEEEEECTTSSEEEEEET---TTTEEEEEECS
T ss_pred CC--CEEEEEeCC--CCEE-----EEEEECCCC--CEEEEEEeCCCCEEEEEEC---CCCcEEEEECC
Confidence 33 356666544 4422 123343321 1112333456667766443 23578887764
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.0086 Score=58.73 Aligned_cols=106 Identities=10% Similarity=0.093 Sum_probs=56.4
Q ss_pred EcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceee
Q 004368 292 ASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVL 371 (758)
Q Consensus 292 ~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l 371 (758)
+++|+.+|+..+.+ ..|.++|+..++....+... ......++++++.|+..+.. ..|...++........+
T Consensus 183 ~~~~~~~l~s~~~d---g~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~ 253 (342)
T d2ovrb2 183 LQFDGIHVVSGSLD---TSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSGNAD-----STVKIWDIKTGQCLQTL 253 (342)
T ss_dssp EEECSSEEEEEETT---SCEEEEETTTCCEEEEECCC-CSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCEEEEE
T ss_pred ccCCCCEEEEEeCC---CeEEEeecccceeeeEeccc-ccceeEEecCCCEEEEEcCC-----CEEEEEecccccccccc
Confidence 44566665543332 24677788776522222222 22333467778866555433 35777777653222223
Q ss_pred ecC-CCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 372 IPH-RESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 372 ~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
... .....+..+.+.++.+ ++...+|. +++|++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~s~s~Dg~--i~iwd~~t 289 (342)
T d2ovrb2 254 QGPNKHQSAVTCLQFNKNFV-ITSSDDGT--VKLWDLKT 289 (342)
T ss_dssp CSTTSCSSCEEEEEECSSEE-EEEETTSE--EEEEETTT
T ss_pred cccceeeeceeecccCCCee-EEEcCCCE--EEEEECCC
Confidence 222 2233445566666655 45566765 78999874
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.54 E-value=0.00079 Score=66.93 Aligned_cols=124 Identities=15% Similarity=0.029 Sum_probs=76.6
Q ss_pred EEEEEEECCCCceeec-cccC---cceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCc----eee
Q 004368 217 YTVYVIDIETGTPVGK-PLVG---VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDI----YSL 288 (758)
Q Consensus 217 ~~l~v~dl~~g~~~~~-~~~~---~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~----~~~ 288 (758)
.+|+|+|+++++.+.. .+.. ....++|||||+.+|++... ...|+.+++.+++ .+......... ...
T Consensus 11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~---~~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~ 85 (337)
T d1pbyb_ 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK---SESLVKIDLVTGE--TLGRIDLSTPEERVKSLF 85 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT---TTEEEEEETTTCC--EEEEEECCBTTEEEECTT
T ss_pred CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECC---CCeEEEEECCCCc--EEEEEecCCCccccccee
Confidence 3799999999987653 3322 24569999999655655422 2368899998873 22222211111 122
Q ss_pred EEEEcCCCcEEEEEecCC---------cceEEEEEeCCCCCceEEeeccccc-eeeEEeecCCEEEEE
Q 004368 289 GLQASESKKFLFIASESK---------ITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFIT 346 (758)
Q Consensus 289 ~~~~S~Dg~~l~~~s~~~---------~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~ 346 (758)
.+.+||||+++++..... ....+.++|..++. .......... ....+++||++++..
T Consensus 86 ~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~ 152 (337)
T d1pbyb_ 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEAPRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEECCSSCCCEEECTTSSCEEEE
T ss_pred eEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-EEEeccccCCceEEEEcCCCCEEEEE
Confidence 578999999998765431 23567888888765 3222222222 234589999988765
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=97.52 E-value=4.2e-05 Score=76.66 Aligned_cols=110 Identities=7% Similarity=0.007 Sum_probs=68.5
Q ss_pred CCCCCEEEEecCCCccCCCCCCChHHHHHHHc-CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCC
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 591 (758)
+...|+++++||--+.............++.+ .+.|+++|.+.+... .+..+.. +-...-+.+...+++|.++..
T Consensus 67 ~~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~~--~Y~~a~~--n~~~Vg~~ia~~i~~l~~~~g 142 (337)
T d1rp1a2 67 QTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQT--SYTQAAN--NVRVVGAQVAQMLSMLSANYS 142 (337)
T ss_dssp CTTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHHSS--CHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeeccccCc--chHHHHH--HHHHHHHHHHHHHHHHHHhcC
Confidence 34689999999954433332222233466665 599999999753321 1111111 111122455556777777766
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcC
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV 627 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 627 (758)
+++++|-++|||.|+++++.+..+. .....++..-
T Consensus 143 ~~~~~vhlIGhSLGAhvAG~aG~~~-~~l~rItgLD 177 (337)
T d1rp1a2 143 YSPSQVQLIGHSLGAHVAGEAGSRT-PGLGRITGLD 177 (337)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTS-TTCCEEEEES
T ss_pred CChhheEEEeecHHHhhhHHHHHhh-ccccceeccC
Confidence 8999999999999999999887764 3445554433
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=97.48 E-value=0.00017 Score=70.23 Aligned_cols=101 Identities=16% Similarity=0.087 Sum_probs=62.9
Q ss_pred CCCCEEEEecCCCccCCCCCCChHHHHHHHcCcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHH-HHHHHHcCCC
Q 004368 514 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC-AEYLIKNCYC 592 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~ 592 (758)
...|.|+++||.++......|......|. ..+.|+.++.+|.+.. ..-..+++++.+. ++.+.+. .
T Consensus 40 ~~~~~l~c~~~~~~gg~~~~y~~La~~L~-~~~~V~al~~pG~~~~----------e~~~~s~~~~a~~~~~~i~~~--~ 106 (255)
T d1mo2a_ 40 PGEVTVICCAGTAAISGPHEFTRLAGALR-GIAPVRAVPQPGYEEG----------EPLPSSMAAVAAVQADAVIRT--Q 106 (255)
T ss_dssp SCSSEEEEECCCSSSCSGGGGHHHHHHHT-TTCCEEEECCTTSSTT----------CCEESSHHHHHHHHHHHHHHT--T
T ss_pred CCCCeEEEECCCCCCCCHHHHHHHHHhcC-CCceEEEEeCCCcCCC----------CCCCCCHHHHHHHHHHHHHHh--C
Confidence 35688999998543333334544444444 3588999999987532 1112356666664 3444443 2
Q ss_pred CCCcEEEEEeChhHHHHHHHHhhC---CCceeEEEEcC
Q 004368 593 TKEKLCIEGRSAGGLLIGAVLNMR---PDLFKAAVAAV 627 (758)
Q Consensus 593 d~~~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~ 627 (758)
....+.++|||+||.++..++.+. .+....+++..
T Consensus 107 ~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvlld 144 (255)
T d1mo2a_ 107 GDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLID 144 (255)
T ss_dssp SSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEEE
T ss_pred CCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEEC
Confidence 246799999999999998887653 34455555443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.48 E-value=0.0022 Score=63.84 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=38.5
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccC-------cceeEEEecCCeEEEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG-------VTASVEWAGNEALVYIT 253 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~-------~~~~~~wspDg~l~y~~ 253 (758)
..++.|||||++|..+...++ .|+++|+.+++.... .... ...+++|||||+.+|+.
T Consensus 42 p~~l~~spDG~~l~v~~~~~~----~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~ 106 (346)
T d1jmxb_ 42 PGTAMMAPDNRTAYVLNNHYG----DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYAT 106 (346)
T ss_dssp SCEEEECTTSSEEEEEETTTT----EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEE
T ss_pred cceEEECCCCCEEEEEECCCC----cEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEE
Confidence 347799999999865544443 699999999987642 1111 13458999999444443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.46 E-value=0.018 Score=58.37 Aligned_cols=158 Identities=9% Similarity=0.101 Sum_probs=78.2
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec--cccCcceeEEEecCCe-EEEEEeCCCCCCceEEEEEcCC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNEA-LVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~wspDg~-l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+.+.+||||++|.. ... + ....+.++-+++..... ........+..++|++ +|....+.. ...++...+..
T Consensus 43 s~la~s~d~~~ly~-~~~-~--~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~--~~~v~~~~~~~ 116 (365)
T d1jofa_ 43 SWMTFDHERKNIYG-AAM-K--KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQP--PYAVYANPFYK 116 (365)
T ss_dssp SEEEECTTSSEEEE-EEB-T--EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSST--TCCEEEEEESS
T ss_pred CEEEEcCCCCEEEE-EeC-C--cEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCC--CCEEEEeEccC
Confidence 45789999999854 432 2 35566666655433222 2222233467889994 443332211 22344433322
Q ss_pred CCCCcEEEe---------------eecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEE---eeccc--c
Q 004368 271 DQSNDICLY---------------HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV---LTPRV--V 330 (758)
Q Consensus 271 ~~~~~~~v~---------------~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~---l~~~~--~ 330 (758)
... ...++ +........++.++|||++|++..... ..|++++.+....... +.... .
T Consensus 117 ~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~--d~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T d1jofa_ 117 FAG-YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA--NKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SCC-EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT--TEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred CCC-cceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCC--CEEEEEEccCCCceeeccceeecCCCC
Confidence 111 11111 111122234678999999998765433 3456555432211221 11111 1
Q ss_pred c-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 331 G-VDTAASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 331 ~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
+ ....++|+|+++|+....+ ..|.+++.+.
T Consensus 194 gPr~i~f~pdg~~~yv~~e~~----~~V~v~~~~~ 224 (365)
T d1jofa_ 194 HPRWVAMHPTGNYLYALMEAG----NRICEYVIDP 224 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTT----TEEEEEEECT
T ss_pred ceEEEEECCCCceEEEeccCC----CEEEEEEecC
Confidence 2 2234899999877765543 3565555543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.42 E-value=0.0066 Score=58.76 Aligned_cols=189 Identities=13% Similarity=0.091 Sum_probs=102.8
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+....++|+++.|+.... + ..+.++|+.+++.... . .......++|+||+.++++...+. .+..+++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~-d----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~v~~~~~~~ 174 (317)
T d1vyhc1 104 VSSVSIMPNGDHIVSASR-D----KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ----TVRVWVVAT 174 (317)
T ss_dssp EEEEEECSSSSEEEEEET-T----SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTT
T ss_pred ceeeeccCCCceEEeecc-C----cceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCC----eEEEEeecc
Confidence 556789999999875543 2 3688999999887653 1 122356689999995444544322 366667665
Q ss_pred CCCCcEEEeeecCCceeeEEEEcCCC--------------------cEEEEEecCCcceEEEEEeCCCCCceEEeecccc
Q 004368 271 DQSNDICLYHEKDDIYSLGLQASESK--------------------KFLFIASESKITRFVFYLDVSKPEELRVLTPRVV 330 (758)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~S~Dg--------------------~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~ 330 (758)
.. ....+.... .....+.+++++ ..++..+. ...|.++|+.++.....+.....
T Consensus 175 ~~--~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~~~~~~~~~~~~ 248 (317)
T d1vyhc1 175 KE--CKAELREHR-HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR---DKTIKMWDVSTGMCLMTLVGHDN 248 (317)
T ss_dssp CC--EEEEECCCS-SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET---TSEEEEEETTTTEEEEEEECCSS
T ss_pred ce--eeEEEecCC-CCceEEEEeeccccceeeccccceeeeeccCCceeEeccC---CCEEEEEECCCCcEEEEEeCCCC
Confidence 42 222222211 112233444443 33332222 23577778877652333333333
Q ss_pred ceee-EEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEE
Q 004368 331 GVDT-AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTY 405 (758)
Q Consensus 331 ~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~ 405 (758)
.+.. .++|+|+.|+..+.+ +.|...|+.+......+..+.. .+..+++..+ .++++...+|. |++|
T Consensus 249 ~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~h~~--~V~~~~~s~~~~~l~s~s~Dg~--i~iW 316 (317)
T d1vyhc1 249 WVRGVLFHSGGKFILSCADD-----KTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAPYVVTGSVDQT--VKVW 316 (317)
T ss_dssp CEEEEEECSSSSCEEEEETT-----TEEEEECCTTSCCCEEEECCSS--CEEEEEECSSSSCEEEEETTSE--EEEE
T ss_pred CEEEEEECCCCCEEEEEECC-----CeEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCe--EEEe
Confidence 3333 488999877655432 4677888865332232433333 3455666543 23445566665 5555
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.40 E-value=0.004 Score=61.48 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=87.0
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-ccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 270 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~ 270 (758)
+....+.+++.+++-... . ..|+++|+.+++.... . -.+....++|+|||.++++...+. .+..+++..
T Consensus 187 ~~~~~~~~~~~~~~~~~~-d----~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~----~i~~~~~~~ 257 (340)
T d1tbga_ 187 VMSLSLAPDTRLFVSGAC-D----ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA----TCRLFDLRA 257 (340)
T ss_dssp EEEEEECTTSSEEEEEET-T----TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTT
T ss_pred EeeeccccccceeEEeec-C----ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCC----eEEEEeecc
Confidence 445677888887765433 2 3689999999887652 1 122356689999995545544322 377778765
Q ss_pred CCCCcEEEeeecC-CceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceee-EEeecCCEEEEEEc
Q 004368 271 DQSNDICLYHEKD-DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRR 348 (758)
Q Consensus 271 ~~~~~~~v~~~~~-~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~ 348 (758)
. .....+.... ......+.|+|||++|+..+.+ ..|+++|+.+++....+......+.. .|+|+|+.|+..+.
T Consensus 258 ~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~ 332 (340)
T d1tbga_ 258 D--QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD---FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp T--EEEEEECCTTCCSCEEEEEECSSSCEEEEEETT---SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred c--ccccccccccccCceEEEEECCCCCEEEEEECC---CEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence 5 2233332222 2223467899999998765543 34788898877633444433334433 48999987765443
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.39 E-value=8.2e-05 Score=74.34 Aligned_cols=112 Identities=10% Similarity=0.019 Sum_probs=71.1
Q ss_pred CCCCCEEEEecCCCccCCCCCCChHHHHHHHc-CcEEEEEecCCCCCCchhHHhcccccCCcChHhHHHHHHHHHHHcCC
Q 004368 513 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 591 (758)
Q Consensus 513 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 591 (758)
+...|+++++||--+.............++.+ .+.|+++|...+... .+..+.... ...-..+...+++|..+..
T Consensus 67 ~~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~~--~Y~~a~~n~--~~Vg~~ia~~i~~l~~~~g 142 (338)
T d1bu8a2 67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRT--EYTQASYNT--RVVGAEIAFLVQVLSTEMG 142 (338)
T ss_dssp CTTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHSS--CHHHHHHHH--HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhccc--chHHHHHhH--HHHHHHHHHHHHHHHHhcC
Confidence 35689999999954433332222334466665 699999998654322 122211111 1111334446666666666
Q ss_pred CCCCcEEEEEeChhHHHHHHHHhhCCCceeEEEEcCC
Q 004368 592 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 628 (758)
Q Consensus 592 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 628 (758)
+++++|-++|||.|+++++.+..+-+.+...++..-|
T Consensus 143 ~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDP 179 (338)
T d1bu8a2 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDP 179 (338)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESC
T ss_pred CCcceeEEEeccHHHHHHHHHHHhhcccccccccccc
Confidence 8999999999999999999999887766666665544
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.29 E-value=0.01 Score=58.04 Aligned_cols=154 Identities=8% Similarity=0.021 Sum_probs=81.0
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceee-c--c--ccCcceeEEEecCC-eEEEEEeCCCCCCceEEE
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-K--P--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWL 265 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~-~--~--~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~ 265 (758)
.|..++|||||++||-+.. +| +|+|||+.++.... . . -.+.+..++|+|++ .++++...+. .++.
T Consensus 13 ~I~~l~fsp~~~~L~s~s~-Dg----~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~----~v~~ 83 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSW-DG----SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG----EILK 83 (342)
T ss_dssp CEEEEEEEGGGTEEEEEET-TS----EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS----CEEE
T ss_pred CEEEEEEeCCCCEEEEEEC-CC----eEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccc----ceee
Confidence 3788999999999986543 33 68999987654321 1 1 12335668999987 6666665332 4777
Q ss_pred EEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeec---cc---cceeeEEee
Q 004368 266 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTP---RV---VGVDTAASH 338 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~---~~---~~~~~~~s~ 338 (758)
+++..... ................+.+++..++..+.. . .+.++|+.++. ....... .. ......+.+
T Consensus 84 w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (342)
T d1yfqa_ 84 VDLIGSPS--FQALTNNEANLGICRICKYGDDKLIAASWD-G--LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp ECSSSSSS--EEECBSCCCCSCEEEEEEETTTEEEEEETT-S--EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred eecccccc--cccccccccccccccccccccccccccccc-c--ccceeeccccccceeeecccccccccceeeeeeeec
Confidence 77766532 222222222222223345555555543332 2 34455554322 1111111 10 111223667
Q ss_pred cCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 339 RGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 339 dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
++..++..+.. ..+...++..
T Consensus 159 ~~~~~~~~~~d-----~~i~~~~~~~ 179 (342)
T d1yfqa_ 159 NSSRLIVGMNN-----SQVQWFRLPL 179 (342)
T ss_dssp CSSEEEEEEST-----TEEEEEESSC
T ss_pred cCCceeeecCC-----CcEEEEeccc
Confidence 77776665543 3466666654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.27 E-value=0.023 Score=55.75 Aligned_cols=184 Identities=13% Similarity=0.075 Sum_probs=105.3
Q ss_pred EECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecc--ccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCC
Q 004368 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQS 273 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~ 273 (758)
.+.++|+.++..... ..|+++|+.+++..... .........|+|++ .++....+. .+.++++.++.
T Consensus 166 ~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~~- 234 (355)
T d1nexb2 166 TVSGHGNIVVSGSYD-----NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT-----TIRIWDLENGE- 234 (355)
T ss_dssp EEEEETTEEEEEETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS-----CEEEEETTTCC-
T ss_pred ccccccceeeeeccc-----ceeeeeecccccceeeeeccccccccccccccceeeecccccc-----eEEeeeccccc-
Confidence 456788888766542 35889999988776431 12234558899999 554444332 37777887652
Q ss_pred CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecccccee--eEEeecCCEEEEEEcCCC
Q 004368 274 NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD--TAASHRGNHFFITRRSDE 351 (758)
Q Consensus 274 ~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~s~~~~ 351 (758)
....+..... ....+.+ ++++|+..+.+ ..|.++|+.+.. . .+........ ..+++++. +++... +
T Consensus 235 -~~~~~~~h~~-~v~~~~~--~~~~l~~~~~d---g~i~iwd~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~l~~g~-d- 302 (355)
T d1nexb2 235 -LMYTLQGHTA-LVGLLRL--SDKFLVSAAAD---GSIRGWDANDYS-R-KFSYHHTNLSAITTFYVSDN-ILVSGS-E- 302 (355)
T ss_dssp -EEEEECCCSS-CCCEEEE--CSSEEEEECTT---SEEEEEETTTCC-E-EEEEECTTCCCCCEEEECSS-EEEEEE-T-
T ss_pred -cccccccccc-ccccccc--ccceeeeeecc---cccccccccccc-e-ecccccCCceEEEEEcCCCC-EEEEEe-C-
Confidence 2333332222 2224455 45676554332 347778887764 2 2222222222 23566665 444433 2
Q ss_pred CCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEc
Q 004368 352 LFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 352 ~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l 407 (758)
..|..+|+.+.......... ....+..+.+.++.+++....+|...|++++.
T Consensus 303 ---~~i~vwd~~tg~~~~~~~~~-~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~df 354 (355)
T d1nexb2 303 ---NQFNIYNLRSGKLVHANILK-DADQIWSVNFKGKTLVAAVEKDGQSFLEILDF 354 (355)
T ss_dssp ---TEEEEEETTTCCBCCSCTTT-TCSEEEEEEEETTEEEEEEESSSCEEEEEEEC
T ss_pred ---CEEEEEECCCCCEEEEEecC-CCCCEEEEEEcCCeEEEEEECCCcEEEEEEeC
Confidence 35777888763222222222 22346678889999888888899877887764
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.25 E-value=0.0014 Score=67.56 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=78.1
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-----ccc---CcceeEEEecCCeEEEEEe-CCCCCCceE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-----PLV---GVTASVEWAGNEALVYITM-DEILRPDKA 263 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-----~~~---~~~~~~~wspDg~l~y~~~-~~~~~~~~v 263 (758)
+..+.||||| +|| +...+ ..|+|||+.+++.... .+. ..+..++|||||.++++.. |.. ...+
T Consensus 187 ~~~v~~s~dg-~la-sgs~D----g~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t--~~~i 258 (393)
T d1sq9a_ 187 ATSVDISERG-LIA-TGFNN----GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS--FGCI 258 (393)
T ss_dssp CCEEEECTTS-EEE-EECTT----SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT--EEEE
T ss_pred EEEEEECCCC-EEE-EEeCC----CcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCC--ccee
Confidence 3457899999 444 33333 4699999999876531 111 2256689999995444543 332 1235
Q ss_pred EEEEcCCCCCCcEEEeee------------cCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccc
Q 004368 264 WLHKLEADQSNDICLYHE------------KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG 331 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~------------~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 331 (758)
.++++.++.. ...+.. .......++.|+|||++|+-.+.+ ..|.++|+++++....+..+...
T Consensus 259 ~lwd~~~g~~--~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D---~~v~vWd~~~g~~~~~l~gH~~~ 333 (393)
T d1sq9a_ 259 TLYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD---GKLRFWDVKTKERITTLNMHCDD 333 (393)
T ss_dssp EEEETTTCCE--EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT---SEEEEEETTTTEEEEEEECCGGG
T ss_pred eeccccccee--eeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC---CEEEEEECCCCCEEEEECCcCCc
Confidence 5667766532 112211 112234578899999987643332 34777798887634445444333
Q ss_pred ee-----eEEeecCCE
Q 004368 332 VD-----TAASHRGNH 342 (758)
Q Consensus 332 ~~-----~~~s~dg~~ 342 (758)
+. ..++++|..
T Consensus 334 v~~~~~~~~~~~~~~~ 349 (393)
T d1sq9a_ 334 IEIEEDILAVDEHGDS 349 (393)
T ss_dssp CSSGGGCCCBCTTSCB
T ss_pred ccCCccEEEECCCCCE
Confidence 32 236777764
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.12 E-value=0.012 Score=56.68 Aligned_cols=188 Identities=9% Similarity=0.032 Sum_probs=96.9
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
+....+++||..++...+ ..+.+++..+++.... +.......++++++ .++....+. ..+..+++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~----~~v~~~~~~~~ 151 (287)
T d1pgua2 83 PKVASANNDGFTAVLTND------DDLLILQSFTGDIIKS-VRLNSPGSAVSLSQNYVAVGLEEG----NTIQVFKLSDL 151 (287)
T ss_dssp EEEEEECSSSEEEEEETT------SEEEEEETTTCCEEEE-EECSSCEEEEEECSSEEEEEETTT----SCEEEEETTEE
T ss_pred eeeeeeccCCceEEEeec------ccceeeeccceeeeee-ccccceeeeeeccCcceeeecccc----ceeeeeecccc
Confidence 345677888887764332 2477888888876653 22222335678888 555444332 13556665432
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEE--eeccccceee-EEeecC--------
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV--LTPRVVGVDT-AASHRG-------- 340 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~--l~~~~~~~~~-~~s~dg-------- 340 (758)
+...............+.|+|||++|+..+.+. .|.++|+.++. ... .......+.. .|+|++
T Consensus 152 --~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---~i~i~d~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 225 (287)
T d1pgua2 152 --EVSFDLKTPLRAKPSYISISPSETYIAAGDVMG---KILLYDLQSRE-VKTSRWAFRTSKINAISWKPAEKGANEEEI 225 (287)
T ss_dssp --EEEEECSSCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTE-EEECCSCCCSSCEEEEEECCCC------CC
T ss_pred --ceeeeeeeccCCceeEEEeccCccccccccccc---cccceeecccc-cccccccccccccceeeecccccccccccC
Confidence 111111111122234678999999988765432 46778887654 211 1111122222 255544
Q ss_pred --CEEEEEEcCCCCCCcEEEEEeCCCCCcceee-ecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEE
Q 004368 341 --NHFFITRRSDELFNSELLACPVDNTSETTVL-IPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYR 406 (758)
Q Consensus 341 --~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~ 406 (758)
..|+ ....+ ..|+..++..+...... ..+. ..+..+.+..+..+++...++. +++|+
T Consensus 226 ~~~~l~-sgs~D----~~i~iw~~~~~~~~~~~~~~h~--~~V~~v~~~~~~~l~s~g~D~~--v~iW~ 285 (287)
T d1pgua2 226 EEDLVA-TGSLD----TNIFIYSVKRPMKIIKALNAHK--DGVNNLLWETPSTLVSSGADAC--IKRWN 285 (287)
T ss_dssp SCCEEE-EEETT----SCEEEEESSCTTCCEEETTSST--TCEEEEEEEETTEEEEEETTSC--EEEEE
T ss_pred CCCeeE-eecCC----CeEEEEECCCCCeEEEEeCCCC--CCeEEEEECCCCEEEEEECCCe--EEEEE
Confidence 3332 22222 45777787653322222 2233 2355666655545666777775 55665
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.96 E-value=0.017 Score=58.55 Aligned_cols=104 Identities=12% Similarity=0.101 Sum_probs=57.5
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECC-CCceeec-c--c--cC-cceeEEEecCCeEEEEEeCCCCCCceEEE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE-TGTPVGK-P--L--VG-VTASVEWAGNEALVYITMDEILRPDKAWL 265 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~-~g~~~~~-~--~--~~-~~~~~~wspDg~l~y~~~~~~~~~~~v~~ 265 (758)
+..+.+||||++|. +.+.+.+ .|++++.. +|..... . . .+ ....++|+|||+++|+..... .+|..
T Consensus 147 ~h~v~~sPdG~~l~-v~d~g~d---~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~---~~V~v 219 (365)
T d1jofa_ 147 IHGMVFDPTETYLY-SADLTAN---KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG---NRICE 219 (365)
T ss_dssp EEEEEECTTSSEEE-EEETTTT---EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT---TEEEE
T ss_pred ceEEEECCCCCEEE-EeeCCCC---EEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCC---CEEEE
Confidence 45789999999985 4454332 45555443 3333221 1 1 12 244589999997777776432 35766
Q ss_pred EEcCCCCCCcEEEeee----------c------CCceeeEEEEcCCCcEEEEEe
Q 004368 266 HKLEADQSNDICLYHE----------K------DDIYSLGLQASESKKFLFIAS 303 (758)
Q Consensus 266 ~~l~~~~~~~~~v~~~----------~------~~~~~~~~~~S~Dg~~l~~~s 303 (758)
+++.+........... . .......+.+||||++|+++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn 273 (365)
T d1jofa_ 220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence 6665543211111100 0 001123567999999988754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.94 E-value=0.034 Score=55.04 Aligned_cols=160 Identities=13% Similarity=0.112 Sum_probs=88.4
Q ss_pred eeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecC-CcceEEEEEeCC
Q 004368 239 ASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES-KITRFVFYLDVS 317 (758)
Q Consensus 239 ~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~-~~~~~l~~~d~~ 317 (758)
.+++|.+||.|||+-.. ..+|++++..+.. ....+.+.. ..-.++.+++||+.++..... .....++.++..
T Consensus 43 EG~~~D~~G~Ly~~D~~----~g~I~ri~p~g~~--~~~~~~~~~-~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 43 EGLNFDRQGQLFLLDVF----EGNIFKINPETKE--IKRPFVSHK-ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 115 (319)
T ss_dssp EEEEECTTSCEEEEETT----TCEEEEECTTTCC--EEEEEECSS-SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred EeCEECCCCCEEEEECC----CCEEEEEECCCCe--EEEEEeCCC-CCeeEEEECCCCCEEEEecCCCccceeEEEEcCC
Confidence 46899999988776432 2368877765542 222222222 223467899999865544332 334678888887
Q ss_pred CCCceEEeecccc-c--e-eeEEeecCCEEEEEEcCC--CCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEe--CCE
Q 004368 318 KPEELRVLTPRVV-G--V-DTAASHRGNHFFITRRSD--ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDH 389 (758)
Q Consensus 318 ~~~~~~~l~~~~~-~--~-~~~~s~dg~~l~~~s~~~--~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~ 389 (758)
+.. ...+..... . . ...++++|+ +|+..... ......+++++.++. ..+.+... -....++.++ ++.
T Consensus 116 ~~~-~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~--~~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 116 GDN-LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQN--ISVANGIALSTDEKV 190 (319)
T ss_dssp SCS-CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEE--ESSEEEEEECTTSSE
T ss_pred Cce-eeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccc-eeEEEeec--cceeeeeeeccccce
Confidence 765 444332211 1 1 123788886 77765432 123467888887642 22223221 1123456665 456
Q ss_pred EEEEEEeCCeeEEEEEEcCCCCC
Q 004368 390 LAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 390 l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
|++..... .+|+.|+++.++.
T Consensus 191 lyvad~~~--~~I~~~d~~~~g~ 211 (319)
T d2dg1a1 191 LWVTETTA--NRLHRIALEDDGV 211 (319)
T ss_dssp EEEEEGGG--TEEEEEEECTTSS
T ss_pred EEEecccC--CceEEEEEcCCCc
Confidence 76665443 3578888875543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.81 E-value=0.13 Score=50.00 Aligned_cols=199 Identities=10% Similarity=0.008 Sum_probs=98.6
Q ss_pred ceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCC
Q 004368 238 TASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS 317 (758)
Q Consensus 238 ~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~ 317 (758)
..+++++|||+||++... ..+|++++-++. .. .+.... ....++.+++||+.++. ....+. ++.++..
T Consensus 30 ~e~iAv~pdG~l~vt~~~----~~~I~~i~p~g~---~~-~~~~~~-~~~~gla~~~dG~l~v~-~~~~~~--~~~~~~~ 97 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHE----VGEIVSITPDGN---QQ-IHATVE-GKVSGLAFTSNGDLVAT-GWNADS--IPVVSLV 97 (302)
T ss_dssp EEEEEECTTSCEEEEETT----TTEEEEECTTCC---EE-EEEECS-SEEEEEEECTTSCEEEE-EECTTS--CEEEEEE
T ss_pred cCCEEECCCCCEEEEeCC----CCEEEEEeCCCC---EE-EEEcCC-CCcceEEEcCCCCeEEE-ecCCce--EEEEEec
Confidence 456899999998776543 236887764432 22 333222 23446889999995444 333222 3334333
Q ss_pred CCC-ceEEeeccccc--e-eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeec--------CCCCceeeeEEE
Q 004368 318 KPE-ELRVLTPRVVG--V-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIP--------HRESVKLQDIQL 385 (758)
Q Consensus 318 ~~~-~~~~l~~~~~~--~-~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~ 385 (758)
... ....+...... . ...++++| .+|+.... +.++++++..+.....+... ........++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~ 172 (302)
T d2p4oa1 98 KSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSY----RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR 172 (302)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETT----TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE
T ss_pred ccccceeeccccCCccccceeEEccCC-CEEeeccc----cccceeeeccCCcceeEecCCccceeeccCcccccccccc
Confidence 222 23333322111 1 12256665 45554332 35788888765321111111 111223456778
Q ss_pred eCCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCC
Q 004368 386 FIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMG 465 (758)
Q Consensus 386 ~~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~ 465 (758)
+++.+++....++ +++.++.+..+... ..... . ......++..+.+++ +++.-.. -.+|++++..++
T Consensus 173 ~~~~l~~~~~~~~--~i~~~~~~~~~~~~-----~~~~~-~-~~~~pdgia~d~dG~-l~va~~~---~~~V~~i~p~G~ 239 (302)
T d2p4oa1 173 FGNFLYVSNTEKM--LLLRIPVDSTDKPG-----EPEIF-V-EQTNIDDFAFDVEGN-LYGATHI---YNSVVRIAPDRS 239 (302)
T ss_dssp ETTEEEEEETTTT--EEEEEEBCTTSCBC-----CCEEE-E-ESCCCSSEEEBTTCC-EEEECBT---TCCEEEECTTCC
T ss_pred cCCceeeecCCCC--eEEecccccccccc-----ccccc-c-CCCCCcceEECCCCC-EEEEEcC---CCcEEEECCCCC
Confidence 8888877665544 46677766432210 01111 0 111223455566665 4433322 356888887654
Q ss_pred c
Q 004368 466 I 466 (758)
Q Consensus 466 ~ 466 (758)
.
T Consensus 240 ~ 240 (302)
T d2p4oa1 240 T 240 (302)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=96.68 E-value=0.015 Score=60.20 Aligned_cols=100 Identities=12% Similarity=0.045 Sum_probs=58.4
Q ss_pred EecCCeEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCc---------------
Q 004368 243 WAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI--------------- 307 (758)
Q Consensus 243 wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~--------------- 307 (758)
.+|||+.+|+.... ..+|.++++.+.+. ..+.+-+......++.++|||+++++..+...
T Consensus 79 gtpDGr~lfV~d~~---~~rVavIDl~t~k~--~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~ 153 (441)
T d1qnia2 79 GRYDGKYLFINDKA---NTRVARIRLDIMKT--DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDN 153 (441)
T ss_dssp TEEEEEEEEEEETT---TTEEEEEETTTTEE--EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGG
T ss_pred ccCCCCEEEEEcCC---CCEEEEEECCCCcE--eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccccc
Confidence 36899766776543 33688999988743 23333333333346789999997665442211
Q ss_pred -ceEEEEEeCCCCC-ceEEeeccccceeeEEeecCCEEEEEEc
Q 004368 308 -TRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITRR 348 (758)
Q Consensus 308 -~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~s~dg~~l~~~s~ 348 (758)
...+-.+|..+.+ .++..... .-....++|||+++|+.+.
T Consensus 154 ~~~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 154 SYTMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCY 195 (441)
T ss_dssp EEEEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEES
T ss_pred ccceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEec
Confidence 1234457877766 23333222 1123448999998887764
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.49 E-value=0.0048 Score=63.35 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=65.6
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-c-----------cc---CcceeEEEecCCeEEEEEeCC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-----------LV---GVTASVEWAGNEALVYITMDE 256 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~-----------~~---~~~~~~~wspDg~l~y~~~~~ 256 (758)
.+..++|||||++||-..+... ...|++||+++|+.... . .. +.+..++|+|||.++.+...+
T Consensus 233 ~V~~l~~spdg~~l~sgs~D~t--~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D 310 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHDSNS--FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310 (393)
T ss_dssp CEEEEEECSSTTEEEEEEEETT--EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred eEEEcccccccceeeeecCCCC--cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC
Confidence 4778899999999988765432 36799999999876531 1 01 124668999999655665533
Q ss_pred CCCCceEEEEEcCCCCCCcEEEeeecCCce---eeEEEEcCCCcEEE
Q 004368 257 ILRPDKAWLHKLEADQSNDICLYHEKDDIY---SLGLQASESKKFLF 300 (758)
Q Consensus 257 ~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~---~~~~~~S~Dg~~l~ 300 (758)
..|.++++.++ +.+..+....... ...+.++++|+.++
T Consensus 311 ----~~v~vWd~~~g--~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 311 ----GKLRFWDVKTK--ERITTLNMHCDDIEIEEDILAVDEHGDSLA 351 (393)
T ss_dssp ----SEEEEEETTTT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred ----CEEEEEECCCC--CEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence 25888899877 3344444322111 12356889988753
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.44 E-value=0.2 Score=49.09 Aligned_cols=199 Identities=12% Similarity=0.090 Sum_probs=103.4
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec--cccCc----ceeEEEecCCeEEEEEeCCC---------
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGV----TASVEWAGNEALVYITMDEI--------- 257 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~----~~~~~wspDg~l~y~~~~~~--------- 257 (758)
-..+.++|||+.|.. .+... .|.++|.+++..... ...+. ...+++.+||.||++.....
T Consensus 73 P~Gl~~~~dg~~l~v-ad~~~----~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~ 147 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFV-ADMRL----GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp EEEEEECSSSSEEEE-EETTT----EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred ceeEEEeCCCCEEEE-EECCC----eEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccce
Confidence 356799999997644 44322 478889887654322 11221 24478899998887743211
Q ss_pred --CCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCc----EEEEEecCCcceEEEEEeCCCCC--c-eEEeecc
Q 004368 258 --LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKK----FLFIASESKITRFVFYLDVSKPE--E-LRVLTPR 328 (758)
Q Consensus 258 --~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~----~l~~~s~~~~~~~l~~~d~~~~~--~-~~~l~~~ 328 (758)
.....||+.+... +...+...-. .--++.|++|+. +|++. +....+||.+|+.... . .+.+..-
T Consensus 148 ~~~~~G~v~~~~~dg---~~~~~~~~~~--~pNGi~~~~d~d~~~~~lyv~--d~~~~~i~~~d~~~~g~~~~~~~~~~~ 220 (314)
T d1pjxa_ 148 MQEKFGSIYCFTTDG---QMIQVDTAFQ--FPNGIAVRHMNDGRPYQLIVA--ETPTKKLWSYDIKGPAKIENKKVWGHI 220 (314)
T ss_dssp TSSSCEEEEEECTTS---CEEEEEEEES--SEEEEEEEECTTSCEEEEEEE--ETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred eccCCceEEEEeecC---ceeEeeCCcc--eeeeeEECCCCCcceeEEEEE--eecccceEEeeccCccccceeeEEEEc
Confidence 1123577665432 1222222111 112567888764 45543 3345678888875432 1 1111111
Q ss_pred ---ccce--eeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC--CEEEEEEEeCCeeE
Q 004368 329 ---VVGV--DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQK 401 (758)
Q Consensus 329 ---~~~~--~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~ 401 (758)
..+. ...++.+|+ ||+.... ..+|++++.++......+..+. .....+++.+ +.|+++...++ .
T Consensus 221 ~~~~~~~pdGiavD~~Gn-lyVa~~~----~g~I~~~dp~~g~~~~~i~~p~--~~~t~~afg~d~~~lyVt~~~~g--~ 291 (314)
T d1pjxa_ 221 PGTHEGGADGMDFDEDNN-LLVANWG----SSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENN--A 291 (314)
T ss_dssp CCCSSCEEEEEEEBTTCC-EEEEEET----TTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTT--E
T ss_pred cccccccceeeEEecCCc-EEEEEcC----CCEEEEEeCCCCEEEEEEECCC--CCEEEEEEeCCCCEEEEEECCCC--c
Confidence 0110 122667775 6665443 3579999876522222222222 2344555544 46877766555 4
Q ss_pred EEEEEcCCCCC
Q 004368 402 ITTYRLPAVGE 412 (758)
Q Consensus 402 l~v~~l~~~g~ 412 (758)
|+.++++..|.
T Consensus 292 i~~~~~~~~G~ 302 (314)
T d1pjxa_ 292 VWKFEWQRNGK 302 (314)
T ss_dssp EEEEECSSCBC
T ss_pred EEEEECCCCCh
Confidence 66777765554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.41 E-value=0.23 Score=48.05 Aligned_cols=198 Identities=12% Similarity=0.041 Sum_probs=104.8
Q ss_pred eeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCC
Q 004368 239 ASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS 317 (758)
Q Consensus 239 ~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~ 317 (758)
.++.|.+++ .|||+-.. ..+|++.+..++ ...++..+. ....+.+.+||+.++. .. ..|+++|.+
T Consensus 21 Egp~wd~~~~~l~wvDi~----~~~I~r~d~~~g---~~~~~~~~~--~~~~i~~~~dg~l~va-~~----~gl~~~d~~ 86 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNIL----ERELHELHLASG---RKTVHALPF--MGSALAKISDSKQLIA-SD----DGLFLRDTA 86 (295)
T ss_dssp EEEEEETTTTEEEEEEGG----GTEEEEEETTTT---EEEEEECSS--CEEEEEEEETTEEEEE-ET----TEEEEEETT
T ss_pred eCCeEECCCCEEEEEECC----CCEEEEEECCCC---eEEEEECCC--CcEEEEEecCCCEEEE-Ee----CccEEeecc
Confidence 569999865 89887543 236999988776 233444322 2235667889876653 32 358999999
Q ss_pred CCCceEEeeccccc---e---eeEEeecCCEEEEEEcCCC--CCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeC--
Q 004368 318 KPEELRVLTPRVVG---V---DTAASHRGNHFFITRRSDE--LFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI-- 387 (758)
Q Consensus 318 ~~~~~~~l~~~~~~---~---~~~~s~dg~~l~~~s~~~~--~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-- 387 (758)
+++ .+.+.....+ . ...++++|. +++.+.... .....+++.+- +....+...- ....++.+..
T Consensus 87 tg~-~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~---g~~~~~~~~~--~~~Ng~~~s~d~ 159 (295)
T d2ghsa1 87 TGV-LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAK---GKVTKLFADI--SIPNSICFSPDG 159 (295)
T ss_dssp TCC-EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEET---TEEEEEEEEE--SSEEEEEECTTS
T ss_pred cce-eeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecC---CcEEEEeecc--CCcceeeecCCC
Confidence 887 6665432221 1 123788886 666654321 23456776653 2222232211 1223455554
Q ss_pred CEEEEEEEeCCeeEEEEEEcCCCCCccccccCCce--eeccCcccccCCCCcccCCcEEEEEEecCCCCCEEEEEECCCC
Q 004368 388 DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKS--VEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMG 465 (758)
Q Consensus 388 ~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~--i~~p~~~~~i~~~~~~~d~~~l~~~~sS~~~P~~i~~~d~~~~ 465 (758)
+.+++... ....++.++++.++... ..... +.++...+...+...+.+++.++..+. ...|+++|..+.
T Consensus 160 ~~l~~~dt--~~~~I~~~~~d~~~~~~---~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp~G~ 230 (295)
T d2ghsa1 160 TTGYFVDT--KVNRLMRVPLDARTGLP---TGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDTDGN 230 (295)
T ss_dssp CEEEEEET--TTCEEEEEEBCTTTCCB---SSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECTTCC
T ss_pred ceEEEeec--ccceeeEeeeccccccc---ccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecCCCc
Confidence 45655543 34558888887433211 01111 122222111223444566654443332 357999997544
Q ss_pred c
Q 004368 466 I 466 (758)
Q Consensus 466 ~ 466 (758)
.
T Consensus 231 ~ 231 (295)
T d2ghsa1 231 H 231 (295)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.11 Score=50.15 Aligned_cols=152 Identities=16% Similarity=0.093 Sum_probs=80.9
Q ss_pred eEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc--CcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 195 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV--GVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 195 ~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~--~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
...+++||++|+.... +| .|+++|+.+++....... .... .+++++.++++...+ ..++++++....
T Consensus 180 ~~~~~~~~~~l~s~~~-dg----~i~~~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~s~d----~~i~iwd~~~~~ 248 (342)
T d2ovrb2 180 VYSLQFDGIHVVSGSL-DT----SIRVWDVETGNCIHTLTGHQSLTS--GMELKDNILVSGNAD----STVKIWDIKTGQ 248 (342)
T ss_dssp EEEEEECSSEEEEEET-TS----CEEEEETTTCCEEEEECCCCSCEE--EEEEETTEEEEEETT----SCEEEEETTTCC
T ss_pred cccccCCCCEEEEEeC-CC----eEEEeecccceeeeEeccccccee--EEecCCCEEEEEcCC----CEEEEEeccccc
Confidence 3456778998875543 33 599999999887653211 1233 344455344444432 247777877653
Q ss_pred CCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-ccc----cee-eEEeecCCEEEEE
Q 004368 273 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVV----GVD-TAASHRGNHFFIT 346 (758)
Q Consensus 273 ~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~----~~~-~~~s~dg~~l~~~ 346 (758)
....+............++.++++++..+.+ ..|.++|+.+++..+.+.. ... .+. ..++|+|..+ ..
T Consensus 249 --~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~D---g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~l-a~ 322 (342)
T d2ovrb2 249 --CLQTLQGPNKHQSAVTCLQFNKNFVITSSDD---GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC-AV 322 (342)
T ss_dssp --EEEEECSTTSCSSCEEEEEECSSEEEEEETT---SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE-EE
T ss_pred --ccccccccceeeeceeecccCCCeeEEEcCC---CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEE-EE
Confidence 2233322211111112344566676654432 3578889988762333321 111 122 2378876544 44
Q ss_pred EcCCCCCCcEEEEEeCC
Q 004368 347 RRSDELFNSELLACPVD 363 (758)
Q Consensus 347 s~~~~~~~~~L~~~~~~ 363 (758)
...+|....+|+..|.+
T Consensus 323 g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 323 GSRNGTEETKLLVLDFD 339 (342)
T ss_dssp ECSSSSSCCEEEEEECC
T ss_pred EeCCCCCeeEEEEEeCC
Confidence 44444456788888875
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.08 E-value=0.068 Score=51.11 Aligned_cols=135 Identities=15% Similarity=0.120 Sum_probs=72.6
Q ss_pred EECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec---cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCC
Q 004368 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQS 273 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~---~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~ 273 (758)
.++|+++.++.+...++ .++++++.+.+.... ...+....++|+|||.++++...+. .+.++++.++..
T Consensus 125 ~~~~~~~~~~v~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg----~i~i~d~~~~~~ 196 (287)
T d1pgua2 125 AVSLSQNYVAVGLEEGN----TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG----KILLYDLQSREV 196 (287)
T ss_dssp EEEECSSEEEEEETTTS----CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTTEE
T ss_pred eeeccCcceeeeccccc----eeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccc----cccceeeccccc
Confidence 57889999988776543 478888876554332 1223356789999995445544322 477778765421
Q ss_pred CcEEEeeecCCceeeEEEEcCCCc----------EEEEEecCCcceEEEEEeCCCCC-ceEEeeccccceee-EEeecCC
Q 004368 274 NDICLYHEKDDIYSLGLQASESKK----------FLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDT-AASHRGN 341 (758)
Q Consensus 274 ~~~~v~~~~~~~~~~~~~~S~Dg~----------~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~-~~s~dg~ 341 (758)
....+.... .....++|+|+++ +|+-.+ . ...|+++|+.++. ....+......+.. .|++++
T Consensus 197 -~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~~~~l~sgs-~--D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~- 270 (287)
T d1pgua2 197 -KTSRWAFRT-SKINAISWKPAEKGANEEEIEEDLVATGS-L--DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS- 270 (287)
T ss_dssp -EECCSCCCS-SCEEEEEECCCC------CCSCCEEEEEE-T--TSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-
T ss_pred -ccccccccc-cccceeeecccccccccccCCCCeeEeec-C--CCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-
Confidence 011122112 2233567777654 333222 1 1347777876644 23334333444433 377775
Q ss_pred EEEE
Q 004368 342 HFFI 345 (758)
Q Consensus 342 ~l~~ 345 (758)
.|+-
T Consensus 271 ~l~s 274 (287)
T d1pgua2 271 TLVS 274 (287)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.016 Score=60.75 Aligned_cols=134 Identities=10% Similarity=0.107 Sum_probs=78.7
Q ss_pred CCCCeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCC--------------Ch--HHHHHHHcCcEEEEEecCCC
Q 004368 493 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF--------------NS--SRLSLLDRGFIFAIAQIRGG 556 (758)
Q Consensus 493 s~dG~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~--------------~~--~~~~l~~~G~~v~~~~~RG~ 556 (758)
..++..+.-|++..++ ++ ...|+++++-||||.+...+. .. ....|.+. ..++.+|.+-|
T Consensus 28 ~~~~~~lffw~~~s~~--~~-~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~~-anllfIDqPvG 103 (452)
T d1ivya_ 28 SSGSKHLHYWFVESQK--DP-ENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLI-ANVLYLESPAG 103 (452)
T ss_dssp CSTTEEEEEEEECCSS--CG-GGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGGS-SEEEEECCSTT
T ss_pred cCCCceEEEEEEEcCC--CC-CCCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhcc-cCEEEEecCCC
Confidence 3456677776554332 22 457999999999997643210 00 01233333 56778887755
Q ss_pred CCCchhHHhcccc-cCCcChHhHHHHHH-HHHHHcCCCCCCcEEEEEeChhHHHHHHHHhh---CCC-ceeEEEEcCCcc
Q 004368 557 GELGRQWYENGKF-LKKKNTFTDFIACA-EYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM---RPD-LFKAAVAAVPFV 630 (758)
Q Consensus 557 g~~G~~~~~~~~~-~~~~~~~~D~~~~~-~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~---~p~-~f~a~v~~~~~~ 630 (758)
.|+... ..... ........|+..++ +++....-....++.|.|.||||.-+..++.. .+. .++++++..|++
T Consensus 104 tGfS~~--~~~~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng~~ 181 (452)
T d1ivya_ 104 VGFSYS--DDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLS 181 (452)
T ss_dssp STTCEE--SSCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCCS
T ss_pred cccccC--CCCCCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCCcc
Confidence 555431 11100 11112345555544 45555544556799999999999965554432 333 489999999998
Q ss_pred ch
Q 004368 631 DV 632 (758)
Q Consensus 631 d~ 632 (758)
|.
T Consensus 182 d~ 183 (452)
T d1ivya_ 182 SY 183 (452)
T ss_dssp BH
T ss_pred Cc
Confidence 84
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.52 E-value=1 Score=42.39 Aligned_cols=195 Identities=8% Similarity=0.046 Sum_probs=115.8
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC--cceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
+.++.+-+..++|-| .|... ..|+..+++++........+ ...+++...-+ .||++... ...+.+.++.
T Consensus 38 ~~~ld~D~~~~~iyw-sd~~~---~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~----~~~I~~~~~d 109 (263)
T d1npea_ 38 IIGLAFDCVDKVVYW-TDISE---PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ----LDRIEVAKMD 109 (263)
T ss_dssp EEEEEEETTTTEEEE-EETTT---TEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT----TTEEEEEETT
T ss_pred EEEEEEEeCCCEEEE-EECCC---CeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccC----CCEEEEEecC
Confidence 345667777888755 45444 26888899877655432122 23345554445 67666422 3468887876
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccc-eeeEEeecCCEEEEEE
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITR 347 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~s 347 (758)
... ...+.... ...-.++...|...+|+++........|+.+++++.. .+.+.. .... ....+++.+++||+..
T Consensus 110 g~~--~~~l~~~~-l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~~~~~P~glaiD~~~~~lYw~d 185 (263)
T d1npea_ 110 GTQ--RRVLFDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (263)
T ss_dssp SCS--CEEEECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred Cce--EEEEeccc-ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-ceeeeeecccccceEEEeecCcEEEEEe
Confidence 542 23343322 1122356788988899887655555679999998765 444432 2111 1233777889898874
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
.. ...|.++++++. ..+.++.... ...++++++++++++-...+ .|..++..
T Consensus 186 ~~----~~~I~~~~~~g~-~~~~v~~~~~--~P~~lav~~~~lYwtd~~~~--~I~~~~~~ 237 (263)
T d1npea_ 186 AG----THRAECLNPAQP-GRRKVLEGLQ--YPFAVTSYGKNLYYTDWKTN--SVIAMDLA 237 (263)
T ss_dssp TT----TTEEEEEETTEE-EEEEEEECCC--SEEEEEEETTEEEEEETTTT--EEEEEETT
T ss_pred CC----CCEEEEEECCCC-CeEEEECCCC--CcEEEEEECCEEEEEECCCC--EEEEEECC
Confidence 33 357999998762 2333443322 24578889999876654433 46666655
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=1.1 Score=42.22 Aligned_cols=175 Identities=9% Similarity=0.044 Sum_probs=97.0
Q ss_pred EEEEEECCCCceeeccccCc--ceeEEEecCC-eEEEEEeCCCCCCceEEEEEcCCCC--CCcEEEeeecCCceeeEEEE
Q 004368 218 TVYVIDIETGTPVGKPLVGV--TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ--SNDICLYHEKDDIYSLGLQA 292 (758)
Q Consensus 218 ~l~v~dl~~g~~~~~~~~~~--~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~~~~--~~~~~v~~~~~~~~~~~~~~ 292 (758)
.|+.+++++.+.... +.+. ..++.|.+.+ ++|++-.. ...+++.++.... .....+...... ...+++.
T Consensus 11 ~I~~~~l~~~~~~~~-~~~~~~~~~id~d~~~~~lYw~D~~----~~~I~~~~l~~~~~~~~~~~~~~~~~~-~p~glAv 84 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSL-IPNLRNVVALDTEVASNRIYWSDLS----QRMICSTQLDRAHGVSSYDTVISRDIQ-APDGLAV 84 (266)
T ss_dssp SEEEEETTSCCCEEE-ECSCSSEEEEEEETTTTEEEEEETT----TTEEEEEEC--------CEEEECSSCS-CCCEEEE
T ss_pred eEEEEECCCCcceee-eCCCCceEEEEEEeCCCEEEEEECC----CCEEEEEEecCCCCCcceEEEEeCCCC-CcceEEE
Confidence 478889988765543 2222 3447787776 77665322 2357777664321 112223322111 1124566
Q ss_pred cCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccc-eeeEEeecCCEEEEEEcCCCCCCcEEEEEeCCCCCccee
Q 004368 293 SESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV 370 (758)
Q Consensus 293 S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~ 370 (758)
.+-++.|++... ....|.+.++++.. .+.+.. .... ....++|..+.+|+.... ...+|+++++++. ....
T Consensus 85 D~~~~~lY~~d~--~~~~I~v~~~~g~~-~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~---~~~~I~r~~~dGs-~~~~ 157 (266)
T d1ijqa1 85 DWIHSNIYWTDS--VLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWG---TPAKIKKGGLNGV-DIYS 157 (266)
T ss_dssp ETTTTEEEEEET--TTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECS---SSCEEEEEETTSC-CEEE
T ss_pred eeccceEEEEec--CCCEEEeEecCCce-EEEEEcCCCCCcceEEEEcccCeEEEeccC---CCcceeEeccCCC-ceec
Confidence 667778887543 34578899998765 333332 2221 122367777888876432 3478999999873 2333
Q ss_pred eecCCCCceeeeEEEe--CCEEEEEEEeCCeeEEEEEEcC
Q 004368 371 LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 371 l~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
++.... ....++.++ ++.||+.- .+...|..++++
T Consensus 158 l~~~~~-~~p~gl~iD~~~~~lYw~d--~~~~~I~~~~~d 194 (266)
T d1ijqa1 158 LVTENI-QWPNGITLDLLSGRLYWVD--SKLHSISSIDVN 194 (266)
T ss_dssp EECSSC-SCEEEEEEETTTTEEEEEE--TTTTEEEEEETT
T ss_pred cccccc-ceeeEEEeeccccEEEEec--CCcCEEEEEECC
Confidence 554332 235677776 56777653 334467777776
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.90 E-value=1.4 Score=40.49 Aligned_cols=182 Identities=10% Similarity=0.058 Sum_probs=89.2
Q ss_pred EECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC---cceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCCC
Q 004368 197 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQS 273 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~~ 273 (758)
.+++||++||-+.. + ..|+|||+.+++.+. ++.+ ....+ ++|+.++++...+. .+..+++..+.
T Consensus 20 c~~~d~~~l~sgs~-D----g~i~vWd~~~~~~~~-~l~~H~~~V~~v--~~~~~~l~s~s~D~----~i~~~~~~~~~- 86 (293)
T d1p22a2 20 CLQYDDQKIVSGLR-D----NTIKIWDKNTLECKR-ILTGHTGSVLCL--QYDERVIITGSSDS----TVRVWDVNTGE- 86 (293)
T ss_dssp EEECCSSEEEEEES-S----SCEEEEESSSCCEEE-EECCCSSCEEEE--ECCSSEEEEEETTS----CEEEEESSSCC-
T ss_pred EEEEcCCEEEEEeC-C----CeEEEEECCCCcEEE-EEecCCCCEeee--ecccceeecccccc----ccccccccccc-
Confidence 46889999875433 3 369999999998765 3332 23334 45775555654332 37777776652
Q ss_pred CcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC---ceEEeeccccceeeEEeecCCEEEEEEcCC
Q 004368 274 NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE---ELRVLTPRVVGVDTAASHRGNHFFITRRSD 350 (758)
Q Consensus 274 ~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~---~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~ 350 (758)
.......... . ..........++..... .. +.+.+..+.. ....+...... ..........++..+.+
T Consensus 87 -~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~s~d- 157 (293)
T d1p22a2 87 -MLNTLIHHCE-A--VLHLRFNNGMMVTCSKD-RS--IAVWDMASPTDITLRRVLVGHRAA-VNVVDFDDKYIVSASGD- 157 (293)
T ss_dssp -EEEEECCCCS-C--EEEEECCTTEEEEEETT-SC--EEEEECSSSSCCEEEEEECCCSSC-EEEEEEETTEEEEEETT-
T ss_pred -cccccccccc-c--cccccccccceeecccc-cc--eeEeeccccccccccccccccccc-cccceecccccccccCC-
Confidence 2222221111 1 12334444454443322 22 3344544433 11111111111 12234445555444332
Q ss_pred CCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcCC
Q 004368 351 ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 351 ~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~~ 409 (758)
..+...++........+... ...+..+.+.++.++ ....++. +++|++..
T Consensus 158 ----~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~l~-~~~~dg~--i~i~d~~~ 207 (293)
T d1p22a2 158 ----RTIKVWNTSTCEFVRTLNGH--KRGIACLQYRDRLVV-SGSSDNT--IRLWDIEC 207 (293)
T ss_dssp ----SEEEEEETTTCCEEEEEECC--SSCEEEEEEETTEEE-EEETTSC--EEEEETTT
T ss_pred ----CceeeecCCCCcEEEEEccc--ccccccccCCCCeEE-EecCCCE--EEEEeccc
Confidence 45677777653222223222 223456677777654 4455554 67888763
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.70 E-value=1.8 Score=40.68 Aligned_cols=195 Identities=5% Similarity=0.013 Sum_probs=109.6
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCce----eeccccC--cceeEEEecCC-eEEEEEeCCCCCCceEEEE
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP----VGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLH 266 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~----~~~~~~~--~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~ 266 (758)
.++.+.+.+++|-|+ |... ..|+..++.+... ......+ ...+++.-+-+ .||++.. ...++...
T Consensus 33 ~~id~d~~~~~lYw~-D~~~---~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~----~~~~I~v~ 104 (266)
T d1ijqa1 33 VALDTEVASNRIYWS-DLSQ---RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS----VLGTVSVA 104 (266)
T ss_dssp EEEEEETTTTEEEEE-ETTT---TEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET----TTTEEEEE
T ss_pred EEEEEEeCCCEEEEE-ECCC---CEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEec----CCCEEEeE
Confidence 456788888988554 4333 2566666654221 1111122 13346665556 6766532 22368888
Q ss_pred EcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-ccc-eeeEEeecCCEEE
Q 004368 267 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHFF 344 (758)
Q Consensus 267 ~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-~~~-~~~~~s~dg~~l~ 344 (758)
++.+.. ...+..... ..-.++...|...+|+++.. .....|+.+++++.. .+.+... ... ....+++.+++||
T Consensus 105 ~~~g~~--~~~~~~~~~-~~P~~l~vd~~~g~ly~~~~-~~~~~I~r~~~dGs~-~~~l~~~~~~~p~gl~iD~~~~~lY 179 (266)
T d1ijqa1 105 DTKGVK--RKTLFRENG-SKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLY 179 (266)
T ss_dssp ETTSSS--EEEEEECTT-CCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEE
T ss_pred ecCCce--EEEEEcCCC-CCcceEEEEcccCeEEEecc-CCCcceeEeccCCCc-eecccccccceeeEEEeeccccEEE
Confidence 886542 223333221 12235677888888887643 334679999998875 5555432 111 1233788899999
Q ss_pred EEEcCCCCCCcEEEEEeCCCCCcceeeec-CCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 345 ITRRSDELFNSELLACPVDNTSETTVLIP-HRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 345 ~~s~~~~~~~~~L~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
+.-.. ...|.++++++... ..++. ........++++++++|++.-... ..|+.++..
T Consensus 180 w~d~~----~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~~~~ly~td~~~--~~I~~~~~~ 237 (266)
T d1ijqa1 180 WVDSK----LHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIIN--EAIFSANRL 237 (266)
T ss_dssp EEETT----TTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETTEEEEEETTT--TEEEEEETT
T ss_pred EecCC----cCEEEEEECCCCCE-EEEEeCCCcccccEEEEEECCEEEEEECCC--CeEEEEECC
Confidence 87433 36899999976332 33332 222223557889999988765443 346555554
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.19 E-value=0.23 Score=50.84 Aligned_cols=132 Identities=11% Similarity=0.021 Sum_probs=73.2
Q ss_pred CeEEEEEEEeeccccccCCCCCEEEEecCCCccCCCCCCChH---------------HHHHHHcCcEEEEEecCCCCCCc
Q 004368 496 GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSS---------------RLSLLDRGFIFAIAQIRGGGELG 560 (758)
Q Consensus 496 G~~i~~~l~~p~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~---------------~~~l~~~G~~v~~~~~RG~g~~G 560 (758)
+..+.-|++ +... ++ .+.|+||+.-||||.+...++..+ --.|.+ =..++.+|.+-|.|+.
T Consensus 27 ~~~lfyw~~-~s~~-~~-~~~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~~-~anllfiD~PvGtGfS 102 (421)
T d1wpxa1 27 DKHFFFWTF-ESRN-DP-AKDPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNS-NATVIFLDQPVNVGFS 102 (421)
T ss_dssp CCEEEEEEE-CCSS-CT-TTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGGG-SSEEEEECCSTTSTTC
T ss_pred CceEEEEEE-EeCC-CC-CCCCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCccccc-ccCEEEEecCCCCCce
Confidence 456766644 3322 22 457999999999997653211000 012222 2567888877666554
Q ss_pred hhHHhcccccCCcChHhHHHHHHHH-HHHcCCC--CCCcEEEEEeChhHHHHHHHH----hhC-C-CceeEEEEcCCccc
Q 004368 561 RQWYENGKFLKKKNTFTDFIACAEY-LIKNCYC--TKEKLCIEGRSAGGLLIGAVL----NMR-P-DLFKAAVAAVPFVD 631 (758)
Q Consensus 561 ~~~~~~~~~~~~~~~~~D~~~~~~~-l~~~~~~--d~~~i~i~G~S~GG~l~~~~~----~~~-p-~~f~a~v~~~~~~d 631 (758)
.. ............+|+.++++. +....-. ....+.|.|.||||.-+..++ .+. + =.++++++..|++|
T Consensus 103 y~--~~~~~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~d 180 (421)
T d1wpxa1 103 YS--GSSGVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTD 180 (421)
T ss_dssp BC--SSCCCCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCCC
T ss_pred ec--CCccccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCccc
Confidence 31 111111112234455555443 3332221 235799999999999554443 222 2 24789999999998
Q ss_pred hh
Q 004368 632 VL 633 (758)
Q Consensus 632 ~~ 633 (758)
..
T Consensus 181 p~ 182 (421)
T d1wpxa1 181 PL 182 (421)
T ss_dssp HH
T ss_pred ch
Confidence 54
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.97 E-value=2.4 Score=39.31 Aligned_cols=191 Identities=13% Similarity=0.123 Sum_probs=91.2
Q ss_pred EEeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC--cceeEEEecCCeEEEEEeCCCCCCceEEEEEcC
Q 004368 192 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNEALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 192 ~i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
...++++++||+.. ..+... ..+|..++..+.........+ ...++++++||.+|.+.. . ...+.+ .-.
T Consensus 15 ~P~~vavd~dG~i~--v~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~-~---~~~i~~-~~~ 85 (260)
T d1rwia_ 15 SPSGVAVDSAGNVY--VTSEGM--YGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-N---NRVVTL-AAG 85 (260)
T ss_dssp CEEEEEECTTCCEE--EEECSS--SCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEET-T---TEEEEE-CTT
T ss_pred CCCEEEEcCCCCEE--EEEcCC--CCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeee-e---eceeee-eee
Confidence 34577899999843 333222 234555655444333322222 235689999987755432 1 122322 222
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeec-cccc-eeeEEeecCCEEEEEE
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITR 347 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~s 347 (758)
+. .. .+..........++++.++|+..+. . .....++.++..+.. ...... .... ....++++|+ +|+..
T Consensus 86 ~~--~~-~~~~~~~~~~p~~iavd~~g~i~v~-d--~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~~~~g~-~~v~~ 157 (260)
T d1rwia_ 86 SN--NQ-TVLPFDGLNYPEGLAVDTQGAVYVA-D--RGNNRVVKLAAGSKT-QTVLPFTGLNDPDGVAVDNSGN-VYVTD 157 (260)
T ss_dssp CS--CC-EECCCCSCCSEEEEEECTTCCEEEE-E--GGGTEEEEECTTCSS-CEECCCCSCCSCCEEEECTTCC-EEEEE
T ss_pred cc--ce-eeeeeeeeeecccccccccceeEee-c--cccccccccccccce-eeeeeecccCCcceeeecCCCC-Eeeec
Confidence 21 12 2222222222346788899975432 2 234567777776644 222211 1111 1223677776 55554
Q ss_pred cCCCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEc
Q 004368 348 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRL 407 (758)
Q Consensus 348 ~~~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l 407 (758)
.. +.+|++++.++. ..+......-....++.++.+ .|++....++ ++..+..
T Consensus 158 ~~----~~~i~~~d~~~~--~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~--~i~~~~~ 210 (260)
T d1rwia_ 158 TD----NNRVVKLEAESN--NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN--QVVKLLA 210 (260)
T ss_dssp GG----GTEEEEECTTTC--CEEECCCSSCCSEEEEEECTTCCEEEEETTTT--EEEEECT
T ss_pred cc----cccccccccccc--eeeeeeccccCCCccceeeeeeeeeeeecCCC--EEEEEeC
Confidence 33 368999987652 223332222223556777654 5655544333 3444533
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.21 E-value=3.4 Score=38.57 Aligned_cols=156 Identities=10% Similarity=0.027 Sum_probs=93.4
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeecccc--CcceeEEEecCC-eEEEEEeCCCCCCceEEEEEcC
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV--GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 269 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~--~~~~~~~wspDg-~l~y~~~~~~~~~~~v~~~~l~ 269 (758)
..++++.+-++.|.|+.... ..|.+.++++.....+... ....+++..|.+ .+|++.... ...++++.++.
T Consensus 81 p~~iAvD~~~~~lY~~d~~~----~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~--~~~~I~r~~~d 154 (263)
T d1npea_ 81 PEGIALDHLGRTIFWTDSQL----DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--DNPKIETSHMD 154 (263)
T ss_dssp EEEEEEETTTTEEEEEETTT----TEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--SSCEEEEEETT
T ss_pred ccEEEEeccCCeEEEeccCC----CEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC--CCcEEEEecCC
Confidence 44567766688776654332 3688899987654332111 124457787776 666654322 23358888886
Q ss_pred CCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcC
Q 004368 270 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRS 349 (758)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~ 349 (758)
+.. ...+... +-..-.++++.+.++.|++... ....|..+++++.. .+.+..... .-..++.++++||+....
T Consensus 155 G~~--~~~i~~~-~~~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~~g~~-~~~v~~~~~-~P~~lav~~~~lYwtd~~ 227 (263)
T d1npea_ 155 GTN--RRILAQD-NLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPG-RRKVLEGLQ-YPFAVTSYGKNLYYTDWK 227 (263)
T ss_dssp SCC--CEEEECT-TCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEE-EEEEEECCC-SEEEEEEETTEEEEEETT
T ss_pred CCC--ceeeeee-cccccceEEEeecCcEEEEEeC--CCCEEEEEECCCCC-eEEEECCCC-CcEEEEEECCEEEEEECC
Confidence 542 3333322 2222346778888888887543 34678999998765 444443322 112366678888877554
Q ss_pred CCCCCcEEEEEeCCCC
Q 004368 350 DELFNSELLACPVDNT 365 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~ 365 (758)
. .+|++++..++
T Consensus 228 ~----~~I~~~~~~~g 239 (263)
T d1npea_ 228 T----NSVIAMDLAIS 239 (263)
T ss_dssp T----TEEEEEETTTT
T ss_pred C----CEEEEEECCCC
Confidence 3 57999998763
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.23 E-value=4.3 Score=37.40 Aligned_cols=176 Identities=13% Similarity=0.122 Sum_probs=89.8
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccC--cceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 271 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~ 271 (758)
..+++++||+. |..+..+ ..+++.+..++.... ...+ ...++++.++|.+|+.... ..+++.....+.
T Consensus 60 ~gvav~~~g~i--~v~d~~~---~~i~~~~~~~~~~~~-~~~~~~~p~~iavd~~g~i~v~d~~----~~~~~~~~~~~~ 129 (260)
T d1rwia_ 60 QGLAVDGAGTV--YVTDFNN---RVVTLAAGSNNQTVL-PFDGLNYPEGLAVDTQGAVYVADRG----NNRVVKLAAGSK 129 (260)
T ss_dssp CCEEECTTCCE--EEEETTT---EEEEECTTCSCCEEC-CCCSCCSEEEEEECTTCCEEEEEGG----GTEEEEECTTCS
T ss_pred eEEEEcCCCCE--EEeeeee---ceeeeeeeccceeee-eeeeeeecccccccccceeEeeccc----cccccccccccc
Confidence 45688999984 5566554 345555544443332 2222 2456889899877665432 224555554433
Q ss_pred CCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeecc-ccc-eeeEEeecCCEEEEEEcC
Q 004368 272 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHFFITRRS 349 (758)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~-~~~-~~~~~s~dg~~l~~~s~~ 349 (758)
....+.........++..+++|+ +++.. .....|+.++.++.. ...+... ... ....++++|. ||+....
T Consensus 130 ---~~~~~~~~~~~~p~~i~~~~~g~-~~v~~--~~~~~i~~~d~~~~~-~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~ 201 (260)
T d1rwia_ 130 ---TQTVLPFTGLNDPDGVAVDNSGN-VYVTD--TDNNRVVKLEAESNN-QVVLPFTDITAPWGIAVDEAGT-VYVTEHN 201 (260)
T ss_dssp ---SCEECCCCSCCSCCEEEECTTCC-EEEEE--GGGTEEEEECTTTCC-EEECCCSSCCSEEEEEECTTCC-EEEEETT
T ss_pred ---eeeeeeecccCCcceeeecCCCC-Eeeec--cccccccccccccce-eeeeeccccCCCccceeeeeee-eeeeecC
Confidence 12222211111122567789987 44433 234578889887654 3332211 111 1123667765 5554332
Q ss_pred CCCCCcEEEEEeCCCCCcceeeecCCCCceeeeEEEeCC-EEEEE
Q 004368 350 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVY 393 (758)
Q Consensus 350 ~~~~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~ 393 (758)
+.+|++++.++. ...++....-....++.++.+ .|++.
T Consensus 202 ----~~~i~~~~~~~~--~~~~~~~~~~~~P~~i~~d~~g~l~va 240 (260)
T d1rwia_ 202 ----TNQVVKLLAGST--TSTVLPFTGLNTPLAVAVDSDRTVYVA 240 (260)
T ss_dssp ----TTEEEEECTTCS--CCEECCCCSCCCEEEEEECTTCCEEEE
T ss_pred ----CCEEEEEeCCCC--eEEEEccCCCCCeEEEEEeCCCCEEEE
Confidence 367888876542 222333322223456777764 45444
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=92.10 E-value=6.5 Score=39.11 Aligned_cols=97 Identities=10% Similarity=-0.057 Sum_probs=52.1
Q ss_pred CCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCc--ceeEEEecCC-e--EEEEEeCC-----CC----CC----
Q 004368 200 PDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV--TASVEWAGNE-A--LVYITMDE-----IL----RP---- 260 (758)
Q Consensus 200 PDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~--~~~~~wspDg-~--l~y~~~~~-----~~----~~---- 260 (758)
+|||+| |..+... .+|.++|+++-+..+. ++++. .-++.-.+++ + ++...... .. .+
T Consensus 97 yDGryl-FVNDkan---~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~ 172 (459)
T d1fwxa2 97 YDGRFL-FMNDKAN---TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 172 (459)
T ss_dssp EEEEEE-EEEETTT---TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred cceeEE-EEEcCCC---ceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence 589996 5555443 4799999999887553 44443 3345666666 3 32222211 00 01
Q ss_pred ceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEec
Q 004368 261 DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASE 304 (758)
Q Consensus 261 ~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~ 304 (758)
..+...+..+......+... .+. -.+.+++||+|+++++.
T Consensus 173 ~~~t~ID~~tm~V~~QV~V~-g~l---d~~~~s~dGK~af~Tsy 212 (459)
T d1fwxa2 173 NVFTAVDADKWEVAWQVLVS-GNL---DNCDADYEGKWAFSTSY 212 (459)
T ss_dssp EEEEEEETTTTEEEEEEEES-SCC---CCEEECSSSSEEEEEES
T ss_pred eEEEEEecCCceEEEEeeeC-CCh---hccccCCCCCEEEEEec
Confidence 11234555544221121221 122 24678999999999873
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.95 E-value=4.9 Score=37.45 Aligned_cols=194 Identities=9% Similarity=0.027 Sum_probs=94.5
Q ss_pred EeeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceee-c-cc---cCc---ceeEEEecCC-eEEEEEeCCCCCCceE
Q 004368 193 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-K-PL---VGV---TASVEWAGNE-ALVYITMDEILRPDKA 263 (758)
Q Consensus 193 i~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~-~-~~---~~~---~~~~~wspDg-~l~y~~~~~~~~~~~v 263 (758)
...++++|||+ .|..|... ..|.++|.++ +.+. . +. .+. ...+++.++. ..++..... ..++
T Consensus 25 P~gvavd~dg~--i~VaD~~n---~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~i 95 (279)
T d1q7fa_ 25 PSGVAVNAQND--IIVADTNN---HRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP---THQI 95 (279)
T ss_dssp EEEEEECTTCC--EEEEEGGG---TEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG---GCEE
T ss_pred ccEEEEcCCCC--EEEEECCC---CEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccCC---cccc
Confidence 45789999998 36666543 5688899764 4332 1 11 111 2234555554 444443221 2245
Q ss_pred EEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccc--ccee-eEEeecC
Q 004368 264 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV--VGVD-TAASHRG 340 (758)
Q Consensus 264 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~--~~~~-~~~s~dg 340 (758)
...+... +....+..........++..++|+.++... ....+++++.++.. ...+.... .... ..++++|
T Consensus 96 ~~~~~~g---~~~~~~~~~~~~~p~~~avd~~G~i~v~~~---~~~~~~~~~~~g~~-~~~~g~~~~~~~~~~i~~d~~g 168 (279)
T d1q7fa_ 96 QIYNQYG---QFVRKFGATILQHPRGVTVDNKGRIIVVEC---KVMRVIIFDQNGNV-LHKFGCSKHLEFPNGVVVNDKQ 168 (279)
T ss_dssp EEECTTS---CEEEEECTTTCSCEEEEEECTTSCEEEEET---TTTEEEEECTTSCE-EEEEECTTTCSSEEEEEECSSS
T ss_pred ccccccc---cceeecCCCcccccceeccccCCcEEEEee---ccceeeEeccCCce-eecccccccccccceeeeccce
Confidence 5544322 222233222222233567788887654432 33467777765432 23221111 1111 1255555
Q ss_pred CEEEEEEcCCCCCCcEEEEEeCCCCCcceeeecC-CCCceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCCCCC
Q 004368 341 NHFFITRRSDELFNSELLACPVDNTSETTVLIPH-RESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGE 412 (758)
Q Consensus 341 ~~l~~~s~~~~~~~~~L~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~~g~ 412 (758)
.+|+.... +.+|++++.++ .....+.. .......+++.+.+ .+++.-. .+...+.+++.+ |+
T Consensus 169 -~i~v~d~~----~~~V~~~d~~G--~~~~~~g~~g~~~~P~giavD~~G~i~Vad~-~~~~~v~~f~~~--G~ 232 (279)
T d1q7fa_ 169 -EIFISDNR----AHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADN-HNNFNLTIFTQD--GQ 232 (279)
T ss_dssp -EEEEEEGG----GTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEEC-SSSCEEEEECTT--SC
T ss_pred -eEEeeecc----ccceeeeecCC--ceeeeecccccccCCcccccccCCeEEEEEC-CCCcEEEEECCC--CC
Confidence 46666443 35788888764 22222322 22234567777654 4544432 233356677544 65
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=91.88 E-value=0.31 Score=50.89 Aligned_cols=118 Identities=18% Similarity=0.133 Sum_probs=63.7
Q ss_pred CCCEEEEecCCCccCCCCCC---------Ch------HHHHHHHcCcEEEEEecCCCCCCchhHHh-ccccc--CCcC--
Q 004368 515 SDPLLLYGYGSYEICNDPAF---------NS------SRLSLLDRGFIFAIAQIRGGGELGRQWYE-NGKFL--KKKN-- 574 (758)
Q Consensus 515 ~~P~vl~~hGg~~~~~~~~~---------~~------~~~~l~~~G~~v~~~~~RG~g~~G~~~~~-~~~~~--~~~~-- 574 (758)
..|++|++-||||.+...++ .. ....|.+ =..++.+|.+-|.||...-.. .+... ....
T Consensus 66 ~~Pl~lWlnGGPGcSS~~g~f~E~GP~~v~~~~~l~~Np~SWn~-~an~lfIDqPvGvGfSy~~~~~~~~~~~~~~~~~~ 144 (483)
T d1ac5a_ 66 DRPLIIWLNGGPGCSSMDGALVESGPFRVNSDGKLYLNEGSWIS-KGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDL 144 (483)
T ss_dssp SCCEEEEECCTTTBCTHHHHHHSSSSEEECTTSCEEECTTCGGG-TSEEEEECCSTTSTTCSSCCSSGGGSCTTSSCCSH
T ss_pred CCCEEEEECCCCcHHHHHHHHHccCCeEECCCCceeeCCCcccc-cCCEEEEeCCCCcCeeecCCCCccccccccccCCH
Confidence 46999999999997643210 00 0012222 256788887766655421000 00000 0111
Q ss_pred --hHhHHHHHH-HHHHHcCCCCCCcEEEEEeChhHHHHHHHHh----hC-------C-CceeEEEEcCCccchh
Q 004368 575 --TFTDFIACA-EYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN----MR-------P-DLFKAAVAAVPFVDVL 633 (758)
Q Consensus 575 --~~~D~~~~~-~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~----~~-------p-~~f~a~v~~~~~~d~~ 633 (758)
...|+...+ .|+...+.....++.|.|.||||.-+-.++. +. + =-++++++..|++|..
T Consensus 145 ~~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~inLkGi~IGNg~~d~~ 218 (483)
T d1ac5a_ 145 EDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDPN 218 (483)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSCCEEEEEEEEEECCCHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCCCcccceeeeecCCccChh
Confidence 123333332 2344444444679999999999985433332 21 1 1489999999988853
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.84 E-value=1.3 Score=41.73 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=58.6
Q ss_pred eeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCC-ceEEeeccccceee-EEeecCCEEEEEEcCCCCCCcEEEEEeCCC
Q 004368 287 SLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDT-AASHRGNHFFITRRSDELFNSELLACPVDN 364 (758)
Q Consensus 287 ~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~~L~~~~~~~ 364 (758)
..+++|||||++|+..+.+ ++-.||-++..... ...........+.. .|++++..+++....+ ..+...++..
T Consensus 14 I~~l~fsp~~~~L~s~s~D-g~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d----~~v~~w~~~~ 88 (342)
T d1yfqa_ 14 ISDIKIIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ----GEILKVDLIG 88 (342)
T ss_dssp EEEEEEEGGGTEEEEEETT-SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT----SCEEEECSSS
T ss_pred EEEEEEeCCCCEEEEEECC-CeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc----cceeeeeccc
Confidence 3478999999998775543 33444544433222 12222223333333 4888877766665554 3566677654
Q ss_pred CCcceeeecCCCCceeeeEEEeCCEEEEEEEeCCeeEEEEEEcC
Q 004368 365 TSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 408 (758)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~v~~l~ 408 (758)
......................++..++....++. +.+|++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~wd~~ 130 (342)
T d1yfqa_ 89 SPSFQALTNNEANLGICRICKYGDDKLIAASWDGL--IEVIDPR 130 (342)
T ss_dssp SSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSE--EEEECHH
T ss_pred ccccccccccccccccccccccccccccccccccc--cceeecc
Confidence 32222222222222223333444455555555554 5566654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.22 E-value=6.2 Score=37.19 Aligned_cols=198 Identities=13% Similarity=0.202 Sum_probs=113.6
Q ss_pred eeEEECCCCCEEEEEEeCCCCeEEEEEEEECCCCceeec-cccCcceeEEEecCCeEEEEEeCCCCCCceEEEEEcCCCC
Q 004368 194 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 272 (758)
Q Consensus 194 ~~~~~SPDG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~wspDg~l~y~~~~~~~~~~~v~~~~l~~~~ 272 (758)
.+.-..|..+-||.-. | .+|.|+|+++.+.+.. ....-.--..|-.+..|.+++.. .||.+++.++
T Consensus 66 dsAIMhP~~~IiALra---g---~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~t------aVYHW~~~g~- 132 (327)
T d1utca2 66 DSAIMNPASKVIALKA---G---KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDN------AVYHWSMEGE- 132 (327)
T ss_dssp SEEEECSSSSEEEEEE---T---TEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEECSS------EEEEEESSSS-
T ss_pred hhhhcCCCCcEEEEec---C---CeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEcCC------ceEEEcccCC-
Confidence 3567789999998765 4 3699999999887654 34332233688877788888743 4999999554
Q ss_pred CCcEEEeeecC---CceeeEEEEcCCCcEEEEEecCCcc----eEEEEEeCCCCCceEEeeccccceeeEEeecC----C
Q 004368 273 SNDICLYHEKD---DIYSLGLQASESKKFLFIASESKIT----RFVFYLDVSKPEELRVLTPRVVGVDTAASHRG----N 341 (758)
Q Consensus 273 ~~~~~v~~~~~---~~~~~~~~~S~Dg~~l~~~s~~~~~----~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg----~ 341 (758)
.+++.+|+... ..-.++...++|++|+++..-.... ..+-++..+.+. -+.+ .+..+....+--+| .
T Consensus 133 s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~i-eGhaa~F~~~~~~g~~~~~ 210 (327)
T d1utca2 133 SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPI-EGHAASFAQFKMEGNAEES 210 (327)
T ss_dssp CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEE-CCSEEEEEEECCTTCSSCE
T ss_pred CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Cccc-cceeeeeEEEEcCCCCCCc
Confidence 35777887642 2234566789999999876532111 223333444332 2333 22222222222222 2
Q ss_pred EEEEEEcCCCCCCcEEEEEeCCCCCc------ce-e--eecCCC-CceeeeEEEeCC-EEEEEEEeCCeeEEEEEEcCC
Q 004368 342 HFFITRRSDELFNSELLACPVDNTSE------TT-V--LIPHRE-SVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 409 (758)
Q Consensus 342 ~l~~~s~~~~~~~~~L~~~~~~~~~~------~~-~--l~~~~~-~~~~~~~~~~~~-~l~~~~~~~g~~~l~v~~l~~ 409 (758)
.++...+++ ....+|..+++..+.. .+ . .+|++. +.-...+....+ .+++.....|. +++|++.+
T Consensus 211 ~lf~fa~r~-~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~--i~lyDleT 286 (327)
T d1utca2 211 TLFCFAVRG-QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY--IHLYDLET 286 (327)
T ss_dssp EEEEEEEEE-TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSE--EEEEETTT
T ss_pred eEEEEEECC-CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcE--EEEEEccc
Confidence 344444444 4558999998865221 11 1 233321 222345666654 56666666775 77899874
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.11 E-value=4.8 Score=35.72 Aligned_cols=202 Identities=11% Similarity=0.074 Sum_probs=106.4
Q ss_pred CCCEEEEEEeCCCCeEEEEEEEECCCCceeeccccCcceeEEEecC-C--eEEEEEeC-CCCCCceEEEEEcCCCCCCcE
Q 004368 201 DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGN-E--ALVYITMD-EILRPDKAWLHKLEADQSNDI 276 (758)
Q Consensus 201 DG~~lAy~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~wspD-g--~l~y~~~~-~~~~~~~v~~~~l~~~~~~~~ 276 (758)
|+..|.|.....| ..++++++ +|+.+.++-+.+.... .|. + .+.|.+.- .+.+.+.+|..++....+ ..
T Consensus 24 ~~d~ll~~~~seG--~vni~~l~--g~~~vkLtkePI~~~~--~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GE-E~ 96 (313)
T d2hu7a1 24 DGDKLLVVGFSEG--SVNAYLYD--GGETVKLNREPINSVL--DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGE-EQ 96 (313)
T ss_dssp TTTEEEEEEEETT--EEEEEEES--SSSCEECCSSCCSEEC--EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTC-EE
T ss_pred cCCcEEEEEeccc--eEEEEEEe--CCEEEEEecccccCcC--CCccCcceEEEEeehhcCcceeeEEEEccCCCCe-ee
Confidence 5565666665566 36666654 7777665444332211 233 2 67777763 345677889888875433 22
Q ss_pred EEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCCCCceEEeeccccceeeEEeecCCEEEEEEcCCCCCCcE
Q 004368 277 CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSE 356 (758)
Q Consensus 277 ~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~~ 356 (758)
.+ +...+-..+ +..-|++-++|...+.+...||+++ +++ ++.|+.- ..+.+.-+-.|+++.=+.--.+. ...
T Consensus 97 ~i-~spk~vRI~--S~~yddk~vvF~Gased~~~LYvie--gGk-lrkL~~v-PpFsFVtDI~~d~I~G~g~~~g~-~~s 168 (313)
T d2hu7a1 97 RL-EAVKPMRIL--SGVDTGEAVVFTGATEDRVALYALD--GGG-LRELARL-PGFGFVSDIRGDLIAGLGFFGGG-RVS 168 (313)
T ss_dssp EC-TTSCSBEEE--EEEECSSCEEEEEECSSCEEEEEEE--TTE-EEEEEEE-SSCEEEEEEETTEEEEEEEEETT-EEE
T ss_pred Ee-cCCceEEEE--EeeecCceEEEecccCCceEEEEEe--CCc-eeeeccC-CCcceEEeccCCeEEEEeeecCC-cce
Confidence 22 222222222 3445888999988888888888886 454 6666532 33444344557766533322222 234
Q ss_pred EEEEeCCCCCcceeeecCCCCceeeeEEEe-CCEEEEEEEeCCeeEEEEEEcCCCCCccccccCCceeeccCc
Q 004368 357 LLACPVDNTSETTVLIPHRESVKLQDIQLF-IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDP 428 (758)
Q Consensus 357 L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~ 428 (758)
++..|+.. +..+.+.+ .+. ++...... ++.++--+..-|.+.+.-+++.. ++ -.+++||+.
T Consensus 169 fF~adl~S-G~lri~tp-keG-S~~~ay~~~gnKV~sdyEt~gEsywit~D~~s-~~-------yerve~P~k 230 (313)
T d2hu7a1 169 LFTSNLSS-GGLRVFDS-GEG-SFSSASISPGMKVTAGLETAREARLVTVDPRD-GS-------VEDLELPSK 230 (313)
T ss_dssp EEEEETTT-EEEEEECC-SSE-EEEEEEECTTSCEEEEEEESSCEEEEEECTTT-CC-------EEECCCSSC
T ss_pred EEEEeccc-CCEEEecC-CCC-cccceeEccCceeeeccCCCCceEEEEEeccc-Cc-------eeeeecCcc
Confidence 78888854 23333443 332 33333333 34453334445555444344432 22 145666664
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.55 E-value=0.21 Score=50.11 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=25.2
Q ss_pred CCCCEEEEecCCCccC--C---CCCCCh----HHHHHHHcCcEEEEEecC
Q 004368 514 GSDPLLLYGYGSYEIC--N---DPAFNS----SRLSLLDRGFIFAIAQIR 554 (758)
Q Consensus 514 ~~~P~vl~~hGg~~~~--~---~~~~~~----~~~~l~~~G~~v~~~~~R 554 (758)
.++|+ |++||-.|.. . ...|.. ....|-++|+.|+++.+.
T Consensus 6 ~~yPI-VLvHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~ 54 (388)
T d1ku0a_ 6 NDAPI-VLLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVG 54 (388)
T ss_dssp CCCCE-EEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCC
T ss_pred CCCCE-EEeCCcccCCccccCcccccCCchhhhHHHHHhCCCEEEEeccC
Confidence 45785 4579944331 1 123332 456788899999999985
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=80.71 E-value=25 Score=33.55 Aligned_cols=114 Identities=10% Similarity=0.073 Sum_probs=65.8
Q ss_pred EECCCCCEEEEEEeC-CCCeEEEEEEEECCCCceeec-ccc----CcceeEEEecCCeEEEEEeCCCC------------
Q 004368 197 QVSPDNKLVAYAEDT-KGDEIYTVYVIDIETGTPVGK-PLV----GVTASVEWAGNEALVYITMDEIL------------ 258 (758)
Q Consensus 197 ~~SPDG~~lAy~~~~-~G~e~~~l~v~dl~~g~~~~~-~~~----~~~~~~~wspDg~l~y~~~~~~~------------ 258 (758)
.-.+||+...|+.+. .+.+...|+-++.++.+..-. ++. .....++...||+||++......
T Consensus 105 ~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~ 184 (340)
T d1v04a_ 105 FIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG 184 (340)
T ss_dssp EECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTT
T ss_pred EEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhc
Confidence 347899988888876 355566677777665544321 221 12456888889888887432111
Q ss_pred CC-ceEEEEEcCCCCCCcEEEeeecCCceeeEEEEcCCCcEEEEEecCCcceEEEEEeCCC
Q 004368 259 RP-DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 318 (758)
Q Consensus 259 ~~-~~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~S~Dg~~l~~~s~~~~~~~l~~~d~~~ 318 (758)
.+ ..|+..+ ++ +...+.+. -.+--++++|||+++|+++.... .+|++++++.
T Consensus 185 ~~~g~v~~~~--~~--~~~~~~~~--l~~pNGI~~s~d~~~lyVa~t~~--~~i~~y~~~~ 237 (340)
T d1v04a_ 185 LAWSFVTYYS--PN--DVRVVAEG--FDFANGINISPDGKYVYIAELLA--HKIHVYEKHA 237 (340)
T ss_dssp CCCEEEEEEC--SS--CEEEEEEE--ESSEEEEEECTTSSEEEEEEGGG--TEEEEEEECT
T ss_pred CCceeEEEEc--CC--ceEEEcCC--CCccceeEECCCCCEEEEEeCCC--CeEEEEEeCC
Confidence 11 2344443 22 22233332 12334788999999999876544 4466666654
|