Citrus Sinensis ID: 004372

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------76

MASVGHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSDRVFMNLASELEEDSPDKGSDLSN

cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccEEEHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccccEEEEEEEccccccccHHHHHHHHccccccccEEEEEEEEEccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHHHHHcccccEEEEEccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccccccccccHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHcccccEEEEccccccHHHHHcccccccccccccHHHHHccccccEEEEEEEEcccccccccccccccccccccccccc

cccccEEEccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHEHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcHHccccccccccccccEEEEEEEccccccHHHHHHHHHHccccccccEEEEEEEEEEccccccHEEEEccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEcccHHHHHHHHHHHHHccEEEEEEEcccccccccccccccHHHHHHHHHHHHccccEEEEEEEcccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccHHHHHHHcHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHccccEEEEEcccccccccccccHHHccccccccHHEEcccccccEEEEEEEEccccccccccccccccccccccccc

masvghacpapmkptsngvfqgdspldfaLPLAILQICLVILLTRGLAfilrplrqprviaeitggillgpsalgrserflqavfppksqtVLDTLANLGLIFFMFLVGleldpkslrQTGKKALGIAIAGISLpfalgigssfLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVAlsgsgepveeTYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVlvpkegpfaNALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKParrarvadykhrtverknsKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRnglpfwnrgrqsnpnHIVVAFEAFQQLsrvsvrpmtaissmsDMHEDICTTAESKRAAIIILpfhkhqrldgslettrsdfRWVNqrvlkhapcsvgilidrglggttqvsasNVSYTITVLFFGGRDDREALACGarmaehpgisFIVIRFLLAADaigntvsvdmagnasmdEEVLSEFKlktsrngsvryeeRLVRNTAETIAVIREVSRCNLllvgrmpdGELALALSTrsdclelgpvgslltsleFSTASVLIIQQYSDRVFMNLASeleedspdkgsdlsn

MASVGHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARrarvadykhrtverknskaQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPfhkhqrldgsLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEfklktsrngsvryeerlvrntaetiaVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSDRVFMNLASeleedspdkgsdlsn

MASVGHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRmamsaaavndvaawillalavalSGSGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSDRVFMNLASELEEDSPDKGSDLSN

**********************DSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSVRPMTAI******HEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAG********************SVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSDRVFMNL*****************

****GHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKP************************ILACFHSARNIPSTINLL**********GLCVYALHLMELSERSSA*************************IVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQ***********DFRWVNQRVLKHAPCSVGILIDRGLG*********VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA*******************EEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPD***********DCLELGPVGSLLTSLEFSTASVLIIQ***************************

****GHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKA************QSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADA****VSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSDR**********************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		758	2.2.26 [Sep-21-2011]
Q9FFR9		810	Cation/H(+) antiporter 18	yes	no	0.989	0.925	0.681	0.0
Q9SUQ7		820	Cation/H(+) antiporter 17	no	no	0.967	0.893	0.625	0.0
Q9LUN4		800	Cation/H(+) antiporter 19	no	no	0.980	0.928	0.604	0.0
Q1HDT3		811	Cation/H(+) antiporter 16	no	no	0.955	0.892	0.548	0.0
Q9SIT5		821	Cation/H(+) antiporter 15	no	no	0.959	0.885	0.460	0.0
Q9M353		842	Cation/H(+) antiporter 20	no	no	0.948	0.853	0.482	0.0
Q8VYD4		867	Cation/H(+) antiporter 23	no	no	0.934	0.816	0.363	1e-123
Q9SKA9		832	Cation/H(+) antiporter 21	no	no	0.934	0.850	0.333	1e-108
Q9LMJ1		829	Cation/H(+) antiporter 14	no	no	0.972	0.889	0.318	1e-104
O22920		831	Cation/H(+) symporter 13	no	no	0.937	0.855	0.307	2e-94

>sp\|Q9FFR9\|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1	Back alignment and function desciption

 Score = 1048 bits (2711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/804 (68%), Positives = 639/804 (79%), Gaps = 54/804 (6%)

Query: 6   HACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITG 65
            ACPAPMK TSNGVFQGD+P+DFALPLAILQI +VI+LTR LA++LRPLRQPRVIAE+ G
Sbjct: 7   KACPAPMKATSNGVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQPRVIAEVIG 66

Query: 66  GILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKAL 125
           GI+LGPS LGRS+ FL AVFP KS TVL+TLANLGL+FF+FL GLE+D K+LR+TGKKAL
Sbjct: 67  GIMLGPSLLGRSKAFLDAVFPKKSLTVLETLANLGLLFFLFLAGLEIDTKALRRTGKKAL 126

Query: 126 GIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLL 185
           GIA+AGI+LPFALGIGSSF+L+ TISKGV+ST+FLVFMGVALSITAFPVLARILAELKLL
Sbjct: 127 GIALAGITLPFALGIGSSFVLKATISKGVNSTAFLVFMGVALSITAFPVLARILAELKLL 186

Query: 186 TADVGRMAMSAAAVNDVAAWILLALAVALSGS---------------------------- 217
           T ++GR+AMSAAAVNDVAAWILLALA+ALSGS                            
Sbjct: 187 TTEIGRLAMSAAAVNDVAAWILLALAIALSGSNTSPLVSLWVFLSGCAFVIGASFIIPPI 246

Query: 218 ----------GEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANA 267
                     GEP+EETY+CATLA VL  GFITDAIGIH+MFGAFVVGVL+PKEGPFA A
Sbjct: 247 FRWISRRCHEGEPIEETYICATLAVVLVCGFITDAIGIHSMFGAFVVGVLIPKEGPFAGA 306

Query: 268 LVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS 327
           LVEKVEDLVSG+FLPLYFV+SGLKTN+ATIQG QSWGLL LV  TAC GKI+GT  VSL+
Sbjct: 307 LVEKVEDLVSGLFLPLYFVASGLKTNVATIQGAQSWGLLVLVTATACFGKILGTLGVSLA 366

Query: 328 FKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMA 387
           FK+P+REA+ LG LMNTKGLVELIVLNIGKDRKVLNDQ FAIM+LMA+ TTF+TTP+VMA
Sbjct: 367 FKIPMREAITLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFITTPVVMA 426

Query: 388 VYKPARRARV-ADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLC 446
           VYKPARRA+   +YKHR VER+N+  Q RIL CFH A +IPS INLLEA RGI+K EGLC
Sbjct: 427 VYKPARRAKKEGEYKHRAVERENTNTQLRILTCFHGAGSIPSMINLLEASRGIEKGEGLC 486

Query: 447 VYALHLMELSERSSAILMVHKARRNGLPFWN-RGRQSNPNHIVVAFEAFQQLSRVSVRPM 505
           VYALHL ELSERSSAILMVHK R+NG+PFWN RG  ++ + +VVAF+AFQQLSRV+VRPM
Sbjct: 487 VYALHLRELSERSSAILMVHKVRKNGMPFWNRRGVNADADQVVVAFQAFQQLSRVNVRPM 546

Query: 506 TAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCS 565
           TAISSMSD+HEDICTTA  K+AAI+ILPFHKHQ+LDGSLETTR D+RWVN+RVL  APCS
Sbjct: 547 TAISSMSDIHEDICTTAVRKKAAIVILPFHKHQQLDGSLETTRGDYRWVNRRVLLQAPCS 606

Query: 566 VGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 625
           VGI +DRGLGG++QVSA +VSY++ VLFFGG DDREALA G RMAEHPGI   V RF+++
Sbjct: 607 VGIFVDRGLGGSSQVSAQDVSYSVVVLFFGGPDDREALAYGLRMAEHPGIVLTVFRFVVS 666

Query: 626 ADAIGN---------TVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETI- 675
            + +G                  N   DEE++SE +  +S + SV++ E+ + N A  + 
Sbjct: 667 PERVGEIVNVEVSNNNNENQSVKNLKSDEEIMSEIRKISSVDESVKFVEKQIENAAVDVR 726

Query: 676 AVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYS 734
           + I EV R NL LVGRMP GE+ALA+   S+C ELGPVGSLL S E ST ASVL+IQQY+
Sbjct: 727 SAIEEVRRSNLFLVGRMPGGEIALAIRENSECPELGPVGSLLISPESSTKASVLVIQQYN 786

Query: 735 DR-VFMNLASELEE--DSPDKGSD 755
              +  +L +   E   S DK SD
Sbjct: 787 GTGIAPDLGAAETEVLTSTDKDSD 810

May operate as a cation/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SUQ7\|CHX17_ARATH Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1	Back alignment and function description

>sp\|Q9LUN4\|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1	Back alignment and function description

>sp\|Q1HDT3\|CHX16_ARATH Cation/H(+) antiporter 16 OS=Arabidopsis thaliana GN=CHX16 PE=2 SV=1	Back alignment and function description

>sp\|Q9SIT5\|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1	Back alignment and function description

>sp\|Q9M353\|CHX20_ARATH Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1	Back alignment and function description

>sp\|Q8VYD4\|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1	Back alignment and function description

>sp\|Q9SKA9\|CHX21_ARATH Cation/H(+) antiporter 21 OS=Arabidopsis thaliana GN=CHX21 PE=2 SV=2	Back alignment and function description

>sp\|Q9LMJ1\|CHX14_ARATH Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1	Back alignment and function description

>sp\|O22920\|CHX13_ARATH Cation/H(+) symporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		758
255537655		805	Na(+)/H(+) antiporter, putative [Ricinus	0.994	0.936	0.750	0.0
224053817		804	cation proton exchanger [Populus trichoc	0.980	0.924	0.722	0.0
225426078		796	PREDICTED: cation/H(+) antiporter 18 [Vi	0.992	0.944	0.735	0.0
356497291		806	PREDICTED: cation/H(+) antiporter 18-lik	0.993	0.934	0.676	0.0
356540416		805	PREDICTED: cation/H(+) antiporter 18-lik	0.992	0.934	0.669	0.0
357481511		800	Na+/H+ antiporter-like protein [Medicago	0.989	0.937	0.676	0.0
357481513		803	Cation proton exchanger [Medicago trunca	0.989	0.933	0.673	0.0
449513592		799	PREDICTED: cation/H(+) antiporter 18-lik	0.980	0.929	0.698	0.0
449457680		799	PREDICTED: cation/H(+) antiporter 18-lik	0.980	0.929	0.695	0.0
225426073		787	PREDICTED: cation/H(+) antiporter 18 [Vi	0.967	0.931	0.680	0.0

>gi\|255537655\|ref\|XP_002509894.1\| Na(+)/H(+) antiporter, putative [Ricinus communis] gi\|223549793\|gb\|EEF51281.1\| Na(+)/H(+) antiporter, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1199 bits (3102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/799 (75%), Positives = 673/799 (84%), Gaps = 45/799 (5%)

Query: 2   ASVGHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPL-RQPRVI 60
           ASVGH CP+PMKP SNGVFQGDSPLDF+LPL ILQICLV++LTR LAF LR L RQPRVI
Sbjct: 5   ASVGHTCPSPMKPASNGVFQGDSPLDFSLPLVILQICLVLVLTRALAFPLRRLLRQPRVI 64

Query: 61  AEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQT 120
           AEI GGILLGPSALGRSE++L AVFPPKS  VLDTLAN+GL++F+FLVGLELD KSLR+T
Sbjct: 65  AEIIGGILLGPSALGRSEKYLHAVFPPKSLPVLDTLANIGLLYFLFLVGLELDLKSLRKT 124

Query: 121 GKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILA 180
           GKKAL IAIAGISLPF +GIGSSF+LR TISKGV+STSFL+FMGVALSITAFPVLARILA
Sbjct: 125 GKKALAIAIAGISLPFGMGIGSSFILRATISKGVNSTSFLLFMGVALSITAFPVLARILA 184

Query: 181 ELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGS----------------------- 217
           ELKLLT DVGRMAMSAAAVNDVAAWILLALA+ALSGS                       
Sbjct: 185 ELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGSNHSPITSLWVLLCGFVFVICSTL 244

Query: 218 ---------------GEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG 262
                          GEPVEETYVCATLAAVL AGFITDAIGIHAMFGAFV+GVLVPKEG
Sbjct: 245 VLPPIFKLITRRCHEGEPVEETYVCATLAAVLVAGFITDAIGIHAMFGAFVIGVLVPKEG 304

Query: 263 PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTF 322
           PFA ALVEK+EDLVSG+FLPLYFVSSGLKT+IATI GLQSWGLLALV  TAC GKIVGTF
Sbjct: 305 PFARALVEKIEDLVSGLFLPLYFVSSGLKTDIATISGLQSWGLLALVTFTACFGKIVGTF 364

Query: 323 VVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTT 382
           +VSL+ KVPLREALA+G LMNTKGLVELIVLNIGKD+KVLNDQ FAIM+LMA+ TTF+TT
Sbjct: 365 LVSLACKVPLREALAMGFLMNTKGLVELIVLNIGKDKKVLNDQTFAIMVLMALFTTFITT 424

Query: 383 PLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKS 442
           PLVMAVYKPAR++RVADYKHRT+ERKNS  Q RILACFHSARNIPSTINLLEA RG+QK+
Sbjct: 425 PLVMAVYKPARKSRVADYKHRTIERKNSSMQLRILACFHSARNIPSTINLLEASRGVQKA 484

Query: 443 EGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSV 502
           EGLCVYA+HLMELSERSSAILMVHKAR+NGLP WN+G + + N+++VAFEAF+QLS+V V
Sbjct: 485 EGLCVYAMHLMELSERSSAILMVHKARKNGLPTWNKGSKPDSNNVIVAFEAFRQLSQVMV 544

Query: 503 RPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA 562
           R MTAISSMSD+HEDICTTAE KRAAIIILPFHKHQRLDGSLETTR DFRWVN+RVL+HA
Sbjct: 545 RSMTAISSMSDIHEDICTTAERKRAAIIILPFHKHQRLDGSLETTRIDFRWVNRRVLEHA 604

Query: 563 PCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRF 622
           PCSVGIL+DRGLGGT+ V AS+VSY ITVLFFGGRDDREALA GARMAEHPGIS  VIRF
Sbjct: 605 PCSVGILVDRGLGGTSHVPASDVSYLITVLFFGGRDDREALAYGARMAEHPGISLKVIRF 664

Query: 623 LLAADAIGNTVSVDMAGN-----ASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAV 677
           L+A DA G    V+M  +      S DE+ L EFK KT ++ SV+YEE+ +RNTA  + V
Sbjct: 665 LVAPDAQGEITQVNMESSINTKLGSWDEQFLLEFKQKTCKDSSVKYEEKAIRNTAGAMDV 724

Query: 678 IREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFS-TASVLIIQQYSDR 736
           I EV+ CNL LVGRMP+GE+A+AL+  ++C ELGPVGSLL +  FS TASVL+IQQY  +
Sbjct: 725 IHEVNHCNLFLVGRMPEGEIAIALNRWNECPELGPVGSLLATSNFSTTASVLVIQQYDSQ 784

Query: 737 VFMNLASELEEDSPDKGSD 755
           V ++LAS   +D   + S+
Sbjct: 785 VSLDLASHAGDDQVGRDSE 803

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224053817\|ref\|XP_002297994.1\| cation proton exchanger [Populus trichocarpa] gi\|222845252\|gb\|EEE82799.1\| cation proton exchanger [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225426078\|ref\|XP_002272080.1\| PREDICTED: cation/H(+) antiporter 18 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356497291\|ref\|XP_003517494.1\| PREDICTED: cation/H(+) antiporter 18-like [Glycine max]	Back alignment and taxonomy information

>gi\|356540416\|ref\|XP_003538685.1\| PREDICTED: cation/H(+) antiporter 18-like [Glycine max]	Back alignment and taxonomy information

>gi\|357481511\|ref\|XP_003611041.1\| Na+/H+ antiporter-like protein [Medicago truncatula] gi\|355512376\|gb\|AES93999.1\| Na+/H+ antiporter-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357481513\|ref\|XP_003611042.1\| Cation proton exchanger [Medicago truncatula] gi\|355512377\|gb\|AES94000.1\| Cation proton exchanger [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449513592\|ref\|XP_004164366.1\| PREDICTED: cation/H(+) antiporter 18-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449457680\|ref\|XP_004146576.1\| PREDICTED: cation/H(+) antiporter 18-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225426073\|ref\|XP_002276249.1\| PREDICTED: cation/H(+) antiporter 18 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		758
TAIR\|locus:2160457		810	CHX18 "cation/H+ exchanger 18"	0.709	0.664	0.684	1.4e-273
TAIR\|locus:2128484		820	CHX17 "cation/H+ exchanger 17"	0.587	0.542	0.647	7.4e-248
TAIR\|locus:2090462		800	CHX19 "cation/H+ exchanger 19"	0.703	0.666	0.589	4.4e-235
TAIR\|locus:2024578		811	CHX16 "cation/H+ exchanger 16"	0.678	0.633	0.535	3.4e-204
TAIR\|locus:2084370		842	CHX20 "cation/H+ exchanger 20"	0.473	0.426	0.547	3.4e-196
TAIR\|locus:2054152		821	CHX15 "cation/hydrogen exchang	0.672	0.621	0.468	2.1e-180
TAIR\|locus:2031968		867	CHX23 "cation/H+ exchanger 23"	0.672	0.588	0.376	7e-113
TAIR\|locus:2007392		829	CHX14 "cation/hydrogen exchang	0.679	0.621	0.334	9.5e-103
TAIR\|locus:2060827		831	ATCHX13 [Arabidopsis thaliana	0.635	0.580	0.330	1.4e-95
TAIR\|locus:2172631		822	CHX3 "cation/H+ exchanger 3" [	0.659	0.608	0.310	2.2e-76

TAIR\|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1885 (668.6 bits), Expect = 1.4e-273, Sum P(2) = 1.4e-273
 Identities = 379/554 (68%), Positives = 450/554 (81%)

Query:   218 GEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVS 277
             GEP+EETY+CATLA VL  GFITDAIGIH+MFGAFVVGVL+PKEGPFA ALVEKVEDLVS
Sbjct:   257 GEPIEETYICATLAVVLVCGFITDAIGIHSMFGAFVVGVLIPKEGPFAGALVEKVEDLVS 316

Query:   278 GIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALA 337
             G+FLPLYFV+SGLKTN+ATIQG QSWGLL LV  TAC GKI+GT  VSL+FK+P+REA+ 
Sbjct:   317 GLFLPLYFVASGLKTNVATIQGAQSWGLLVLVTATACFGKILGTLGVSLAFKIPMREAIT 376

Query:   338 LGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARV 397
             LG LMNTKGLVELIVLNIGKDRKVLNDQ FAIM+LMA+ TTF+TTP+VMAVYKPARRA+ 
Sbjct:   377 LGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFITTPVVMAVYKPARRAKK 436

Query:   398 -ADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELS 456
               +YKHR VER+N+  Q RIL CFH A +IPS INLLEA RGI+K EGLCVYALHL ELS
Sbjct:   437 EGEYKHRAVERENTNTQLRILTCFHGAGSIPSMINLLEASRGIEKGEGLCVYALHLRELS 496

Query:   457 ERSSAILMVHKARRNGLPFWNR-GRQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMH 515
             ERSSAILMVHK R+NG+PFWNR G  ++ + +VVAF+AFQQLSRV+VRPMTAISSMSD+H
Sbjct:   497 ERSSAILMVHKVRKNGMPFWNRRGVNADADQVVVAFQAFQQLSRVNVRPMTAISSMSDIH 556

Query:   516 EDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLG 575
             EDICTTA  K+AAI+ILPFHKHQ+LDGSLETTR D+RWVN+RVL  APCSVGI +DRGLG
Sbjct:   557 EDICTTAVRKKAAIVILPFHKHQQLDGSLETTRGDYRWVNRRVLLQAPCSVGIFVDRGLG 616

Query:   576 GTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSV 635
             G++QVSA +VSY++ VLFFGG DDREALA G RMAEHPGI   V RF+++ + +G  V+V
Sbjct:   617 GSSQVSAQDVSYSVVVLFFGGPDDREALAYGLRMAEHPGIVLTVFRFVVSPERVGEIVNV 676

Query:   636 DMAGNAS---------MDEEVLSEFKLKTSRNGSVRYEERLVRNTAETI-AVIREVSRCN 685
             +++ N +          DEE++SE +  +S + SV++ E+ + N A  + + I EV R N
Sbjct:   677 EVSNNNNENQSVKNLKSDEEIMSEIRKISSVDESVKFVEKQIENAAVDVRSAIEEVRRSN 736

Query:   686 LLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYSDR-VFMNL-A 742
             L LVGRMP GE+ALA+   S+C ELGPVGSLL S E ST ASVL+IQQY+   +  +L A
Sbjct:   737 LFLVGRMPGGEIALAIRENSECPELGPVGSLLISPESSTKASVLVIQQYNGTGIAPDLGA 796

Query:   743 SELEE-DSPDKGSD 755
             +E E   S DK SD
Sbjct:   797 AETEVLTSTDKDSD 810

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006885 "regulation of pH" evidence=IMP

TAIR\|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2024578 CHX16 "cation/H+ exchanger 16" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2084370 CHX20 "cation/H+ exchanger 20" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2031968 CHX23 "cation/H+ exchanger 23" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060827 ATCHX13 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2172631 CHX3 "cation/H+ exchanger 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FFR9	CHX18_ARATH	No assigned EC number	0.6815	0.9894	0.9259	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		758
PLN03159		832	PLN03159, PLN03159, cation/H(+) antiporter 15; Pro	0.0
pfam00999		370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	1e-57
COG0475		397	COG0475, KefB, Kef-type K+ transport systems, memb	1e-56
TIGR00932		273	TIGR00932, 2a37, transporter, monovalent cation:pr	4e-31
COG4651		408	COG4651, RosB, Kef-type K+ transport system, predi	5e-13
PRK03659		601	PRK03659, PRK03659, glutathione-regulated potassiu	8e-11
PRK03562		621	PRK03562, PRK03562, glutathione-regulated potassiu	6e-10
PRK10669		558	PRK10669, PRK10669, putative cation:proton antipor	2e-06

>gnl\|CDD\|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional	Back alignment and domain information

 Score =  782 bits (2021), Expect = 0.0
 Identities = 391/784 (49%), Positives = 537/784 (68%), Gaps = 65/784 (8%)

Query: 8   CPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGI 67
           C APM  T+NG++QGD+PLDF+LPL ILQ+ LV++ TR L FIL+P RQPRVI+EI GG+
Sbjct: 19  CYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGV 78

Query: 68  LLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGI 127
           +LGPS LG+SE F   +FP +S  VL+T+ANLGL++F+FLVG+E+D   +R+TGKKAL I
Sbjct: 79  ILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAI 138

Query: 128 AIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTA 187
           AIAG++LPF +G+  SF+  + +S+ V   +F++F+GVALS+TAFPVLARILAE+KL+  
Sbjct: 139 AIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINT 197

Query: 188 DVGRMAMSAAAVNDVAAWILLALAVALSGS------------------------------ 217
           ++GR+AMSAA VND+ AWILLALA+AL+ +                              
Sbjct: 198 ELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIW 257

Query: 218 --------GEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALV 269
                   GE   E Y+C  L  V+ +GFITDAIG H++FGAFV G+++P  GP    L+
Sbjct: 258 WIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLI 316

Query: 270 EKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFK 329
           EK+ED VSG+ LPL+F  SGLKTN+  IQG  +WGLL LVI+ A  GKI+GT +++  + 
Sbjct: 317 EKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYT 376

Query: 330 VPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 389
           +P RE + LG LMNTKGLVE+IVLN+G+D++VL+D+ FA+M+L+AV  T + TP+V  VY
Sbjct: 377 MPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVY 436

Query: 390 KPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYA 449
           +PAR  R+  YK RT++R    A+ R+L C H+ RN+P+ INLLEA    ++S  +C+Y 
Sbjct: 437 RPAR--RLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSP-ICIYV 493

Query: 450 LHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQ-LSRVSVRPMTAI 508
           LHL+EL+ R+SA+L+VH  R++G P  NR  Q+  +HI+ AFE ++Q    VSV+P+TAI
Sbjct: 494 LHLVELTGRASAMLIVHNTRKSGRPALNR-TQAQSDHIINAFENYEQHAGCVSVQPLTAI 552

Query: 509 SSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568
           S  S MHED+C  AE KR ++II+PFHK Q +DG +E T   FR VNQ VL +APCSVGI
Sbjct: 553 SPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGI 612

Query: 569 LIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADA 628
           L+DRGL G T+++++ VS+ + VLFFGG DDREALA   RM+EHPGI+  V+RF+   DA
Sbjct: 613 LVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDA 672

Query: 629 IGN--------------TVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAET 674
                            TV  D      +DEE ++EF+ + + N S+ Y E++V N  ET
Sbjct: 673 APTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEET 732

Query: 675 IAVIREV-SRCNLLLVGRMPDGE---LALALSTRSDCLELGPVGSLLTSLEFS-TASVLI 729
           +A IR + S  +L +VGR   G    L   L+  S+C ELG +G LL S +F+ T SVL+
Sbjct: 733 VAAIRSMDSAHDLFIVGRGQ-GMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLV 791

Query: 730 IQQY 733
           +QQY
Sbjct: 792 VQQY 795

Length = 832

>gnl\|CDD\|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	Back alignment and domain information

>gnl\|CDD\|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>gnl\|CDD\|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>gnl\|CDD\|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>gnl\|CDD\|182633 PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		758
PLN03159		832	cation/H(+) antiporter 15; Provisional	100.0
KOG1650		769	consensus Predicted K+/H+-antiporter [Inorganic io	100.0
PRK03562		621	glutathione-regulated potassium-efflux system prot	100.0
PRK03659		601	glutathione-regulated potassium-efflux system prot	100.0
PRK10669		558	putative cation:proton antiport protein; Provision	100.0
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	100.0
PRK05326		562	potassium/proton antiporter; Reviewed	100.0
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	100.0
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	99.97
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.94
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.93
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.9
TIGR00840		559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.87
COG3263		574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.84
PRK14853		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.73
PRK11175		305	universal stress protein UspE; Provisional	99.7
KOG1965		575	consensus Sodium/hydrogen exchanger protein [Inorg	99.67
KOG4505		467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.53
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.48
TIGR00773		373	NhaA Na+/H+ antiporter NhaA. These proteins are me	99.47
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	99.2
PRK14856		438	nhaA pH-dependent sodium/proton antiporter; Provis	99.17
PRK15456		142	universal stress protein UspG; Provisional	99.14
PRK09560		389	nhaA pH-dependent sodium/proton antiporter; Review	99.12
PRK15005		144	universal stress protein F; Provisional	99.1
PRK09561		388	nhaA pH-dependent sodium/proton antiporter; Review	99.09
PRK14854		383	nhaA pH-dependent sodium/proton antiporter; Provis	99.09
PRK15118		144	universal stress global response regulator UspA; P	99.04
PRK14855		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.04
PRK09982		142	universal stress protein UspD; Provisional	99.04
cd01987		124	USP_OKCHK USP domain is located between the N-term	99.03
PF00582		140	Usp: Universal stress protein family; InterPro: IP	99.0
KOG1966		670	consensus Sodium/hydrogen exchanger protein [Inorg	98.99
PRK10116		142	universal stress protein UspC; Provisional	98.85
PF06965		378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	98.84
cd00293		130	USP_Like Usp: Universal stress protein family. The	98.75
COG3004		390	NhaA Na+/H+ antiporter [Inorganic ion transport an	98.74
PRK11175		305	universal stress protein UspE; Provisional	98.74
COG0589		154	UspA Universal stress protein UspA and related nuc	98.33
PF05684		378	DUF819: Protein of unknown function (DUF819); Inte	98.32
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	98.29
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	98.2
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	98.1
PF00582		140	Usp: Universal stress protein family; InterPro: IP	98.09
PRK15005		144	universal stress protein F; Provisional	97.99
PRK10116		142	universal stress protein UspC; Provisional	97.9
cd01987		124	USP_OKCHK USP domain is located between the N-term	97.89
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	97.84
PRK09982		142	universal stress protein UspD; Provisional	97.83
PF03812		314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.73
PRK15456		142	universal stress protein UspG; Provisional	97.64
PRK15118		144	universal stress global response regulator UspA; P	97.64
cd00293		130	USP_Like Usp: Universal stress protein family. The	97.51
TIGR00793		314	kdgT 2-keto-3-deoxygluconate transporter. This fam	97.5
COG3180		352	AbrB Putative ammonia monooxygenase [General funct	97.23
PF03390		414	2HCT: 2-hydroxycarboxylate transporter family; Int	97.18
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	97.09
PF05145		318	AmoA: Putative ammonia monooxygenase; InterPro: IP	97.05
COG0385		319	Predicted Na+-dependent transporter [General funct	96.98
PRK05274		326	2-keto-3-deoxygluconate permease; Provisional	96.96
COG0798		342	ACR3 Arsenite efflux pump ACR3 and related permeas	96.92
COG3493		438	CitS Na+/citrate symporter [Energy production and	96.87
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	96.84
PRK03818		552	putative transporter; Validated	96.73
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	96.73
TIGR00832		328	acr3 arsenical-resistance protein. The first prote	96.67
TIGR00841		286	bass bile acid transporter. Functionally character	96.64
PRK03562		621	glutathione-regulated potassium-efflux system prot	96.55
PRK10490		895	sensor protein KdpD; Provisional	96.52
TIGR00698		335	conserved hypothetical integral membrane protein.	96.48
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	96.43
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	96.34
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	96.31
PRK03659		601	glutathione-regulated potassium-efflux system prot	96.2
TIGR00783		347	ccs citrate carrier protein, CCS family. These pro	96.16
PRK10669		558	putative cation:proton antiport protein; Provision	96.07
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	96.01
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	95.82
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	95.73
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	95.54
COG0589		154	UspA Universal stress protein UspA and related nuc	95.42
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	95.41
PRK04972		558	putative transporter; Provisional	95.31
PRK05326		562	potassium/proton antiporter; Reviewed	95.29
PF06826		169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	95.18
COG2855		334	Predicted membrane protein [Function unknown]	94.8
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	94.65
COG5505		384	Predicted integral membrane protein [Function unkn	94.59
PLN03159		832	cation/H(+) antiporter 15; Provisional	94.37
TIGR00930		953	2a30 K-Cl cotransporter.	94.04
COG2985		544	Predicted permease [General function prediction on	94.0
TIGR00698		335	conserved hypothetical integral membrane protein.	93.98
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	93.93
TIGR01625		154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	93.17
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	93.16
PF01758		187	SBF: Sodium Bile acid symporter family; InterPro:	93.13
cd01984		86	AANH_like Adenine nucleotide alpha hydrolases supe	93.08
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	91.94
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	90.95
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	90.58
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	88.11
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	87.78
PRK10490		895	sensor protein KdpD; Provisional	86.9
PRK03359		256	putative electron transfer flavoprotein FixA; Revi	85.75
PRK04972		558	putative transporter; Provisional	85.27
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	85.03
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	83.83
TIGR00808		254	malonate_madM malonate transporter, MadM subunit.	83.66
TIGR03136		399	malonate_biotin Na+-transporting malonate decarbox	82.42
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	82.1
PF03547		385	Mem_trans: Membrane transport protein; InterPro: I	81.76
COG2855		334	Predicted membrane protein [Function unknown]	81.42
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	81.25
PF03977		360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	81.22
PRK12342		254	hypothetical protein; Provisional	80.86
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	80.25

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

Probab=100.00  E-value=3.5e-148  Score=1316.26  Aligned_cols=722  Identities=54%  Similarity=0.938  Sum_probs=657.5

Q ss_pred             CCCCCCcCCCCCcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccC
Q 004372            7 ACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFP   86 (758)
Q Consensus         7 ~c~~~~~~~~~g~~~~~~p~~~~l~~ll~~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp   86 (758)
                      +|+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|++..+.+.+||
T Consensus        18 ~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp   97 (832)
T PLN03159         18 VCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP   97 (832)
T ss_pred             ccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence            59865578999999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Q 004372           87 PKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVA  166 (758)
Q Consensus        87 ~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~  166 (758)
                      .++.+.+++++++|++|+||++|+|+|++.+||++|+++.+|+.++++|+++|+.+++++.. ...........++++++
T Consensus        98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~~~~~~~~~~~l~~g~a  176 (832)
T PLN03159         98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFILFLGVA  176 (832)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccchhHHHHHHHHH
Confidence            98888999999999999999999999999999999999999999999999999988887743 22122223567899999


Q ss_pred             HhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------------------------
Q 004372          167 LSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGS-----------------------------  217 (758)
Q Consensus       167 ls~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~-----------------------------  217 (758)
                      +|+||+|+++++|+|+|+++|+.||+++++++++|+++|++++++.++...                             
T Consensus       177 lS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~  256 (832)
T PLN03159        177 LSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGI  256 (832)
T ss_pred             HHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988876554211                             


Q ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHh
Q 004372          218 ---------GEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSS  288 (758)
Q Consensus       218 ---------~~~~~e~~~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~  288 (758)
                               +++.++.++.++++++++++++++.+|+|+++|||++|+++|+ +|+++++++|++++++++|+|+||+++
T Consensus       257 ~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlFFv~v  335 (832)
T PLN03159        257 WWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLFFAIS  335 (832)
T ss_pred             HHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     3456788899999999999999999999999999999999995 789999999999999999999999999


Q ss_pred             cccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHH
Q 004372          289 GLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFA  368 (758)
Q Consensus       289 G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~  368 (758)
                      |+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++||+||++++++++++++.|+++++.|+
T Consensus       336 Gl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~  415 (832)
T PLN03159        336 GLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFA  415 (832)
T ss_pred             hheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhh
Confidence            99999988875445666677778889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcchhhhhhhccccccccccCCCCCceEEEEEeecCCChhhHHHHHHHhccCCCCCCceEE
Q 004372          369 IMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVY  448 (758)
Q Consensus       369 ~lv~~~lv~t~i~~plv~~l~~~~~~~~~~~~~~r~i~~~~~~~elriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~  448 (758)
                      +++++++++|.+++|++.++|+|++|+.  .|++|++|+.++++|+|||+|+|++++++++++|+++++++ +++|+++|
T Consensus       416 ~lVl~avl~T~i~~Plv~~ly~p~rk~~--~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t-~~sp~~vy  492 (832)
T PLN03159        416 VMVLVAVAMTALITPVVTVVYRPARRLV--GYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPT-KRSPICIY  492 (832)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHhhhc--cccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCC-CCCCceEE
Confidence            9999999999999999999999999999  99999999999999999999999999999999999999999 89999999


Q ss_pred             EEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHhhhc-cceEEEEeEEecCCCchHHHHHHHHHhcCc
Q 004372          449 ALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQL-SRVSVRPMTAISSMSDMHEDICTTAESKRA  527 (758)
Q Consensus       449 ~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a  527 (758)
                      ++||+|+++|++|.++.|+.+++..+..++ ...++|+++++|+.|+++ ++++++++|++|||++||+|||++|+|+++
T Consensus       493 ~lhLveL~~r~~~~l~~h~~~~~~~~~~~~-~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~  571 (832)
T PLN03159        493 VLHLVELTGRASAMLIVHNTRKSGRPALNR-TQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRV  571 (832)
T ss_pred             EEEEEeecCCCccceeeeeccccccccccc-ccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCC
Confidence            999999999999999999875443321111 124589999999999976 589999999999999999999999999999


Q ss_pred             cEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHHHHH
Q 004372          528 AIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGA  607 (758)
Q Consensus       528 dlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~a~  607 (758)
                      |+||+||||+|+.||++++.+..+|.+|++||++||||||||||||.++..+....+..+||+++|+|||||||||+||+
T Consensus       572 slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~  651 (832)
T PLN03159        572 SLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAW  651 (832)
T ss_pred             CEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999997644333444567899999999999999999999


Q ss_pred             HHhhCCCeEEEEEEEeecccccCcc--------------cccCCcCccccHHHHHHHHHhhcCCCCceEEEEEEecChHH
Q 004372          608 RMAEHPGISFIVIRFLLAADAIGNT--------------VSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAE  673 (758)
Q Consensus       608 rma~~~~v~ltvvr~~~~~~~~~~~--------------~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~e~~v~~~~e  673 (758)
                      |||+||++++||+||++.+....+.              ....++.|+++||++++|||.++..+++|.|+||+|+|++|
T Consensus       652 rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e  731 (832)
T PLN03159        652 RMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEE  731 (832)
T ss_pred             HHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHH
Confidence            9999999999999999754322100              01114568899999999999999888999999999999999


Q ss_pred             HHHHHHhccC-CCEEEEccCC--CchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEeeec
Q 004372          674 TIAVIREVSR-CNLLLVGRMP--DGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYS  734 (758)
Q Consensus       674 ~~~~i~~~~~-~DL~iVGr~~--~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvqq~~  734 (758)
                      |++++|+|++ |||+||||+|  +|++|+||+||+||||||+|||+|||+||.+ +||||||||+
T Consensus       732 ~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~  796 (832)
T PLN03159        732 TVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYV  796 (832)
T ss_pred             HHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence            9999999998 9999999998  5999999999999999999999999999999 9999999998

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3	Back alignment and domain information

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>TIGR00773 NhaA Na+/H+ antiporter NhaA	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter	Back alignment and domain information

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]	Back alignment and domain information

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase	Back alignment and domain information

>COG0385 Predicted Na+-dependent transporter [General function prediction only]	Back alignment and domain information

>PRK05274 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>TIGR00832 acr3 arsenical-resistance protein	Back alignment and domain information

>TIGR00841 bass bile acid transporter	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>TIGR00783 ccs citrate carrier protein, CCS family	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG5505 Predicted integral membrane protein [Function unknown]	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>TIGR00930 2a30 K-Cl cotransporter	Back alignment and domain information

>COG2985 Predicted permease [General function prediction only]	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes	Back alignment and domain information

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>PRK03359 putative electron transfer flavoprotein FixA; Reviewed	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00808 malonate_madM malonate transporter, MadM subunit	Back alignment and domain information

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit	Back alignment and domain information

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins	Back alignment and domain information

>PRK12342 hypothetical protein; Provisional	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		758
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 73.3 bits (179), Expect = 2e-13
 Identities = 63/425 (14%), Positives = 132/425 (31%), Gaps = 151/425 (35%)

Query: 243 IGIHAMFGAFVVG--VLVPKEGPFANALV-EKVEDLVS-GIFLPLYFVSSG-LKTNIATI 297
           + I  + G+   G   +        +  +  KV+  +   IF    +++     +    +
Sbjct: 153 VLIDGVLGS---GKTWVA------LDVCLSYKVQCKMDFKIF----WLNLKNCNSPETVL 199

Query: 298 QGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLR-EAL--ALGILMNTKGLVE-LIVL 353
           + LQ   LL  +                 S  + LR  ++   L  L+ +K     L+VL
Sbjct: 200 EMLQK--LLYQIDPNWTSR-------SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 354 -NIGKDRKVLNDQVFAIM--ILMAVVTTFMTTPLVMAVYKPARRARVAD------YKHRT 404
            N+ ++ K  N   F +   IL   +TT              R  +V D        H +
Sbjct: 251 LNV-QNAKAWN--AFNLSCKIL---LTT--------------RFKQVTDFLSAATTTHIS 290

Query: 405 VE-------RKNSKAQF-RIL----------ACFHS----------ARNIPSTIN----- 431
           ++           K+   + L              +           R+  +T +     
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 432 LLEALRGIQKSEGLCVYALHLMELSER--SSAILM--VHKARRNGLP------FWNRGRQ 481
             + L  I +S    +  L   E  +     ++     H      +P       W    +
Sbjct: 351 NCDKLTTIIES---SLNVLEPAEYRKMFDRLSVFPPSAH------IPTILLSLIWFDVIK 401

Query: 482 SNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRA--AIII-------- 531
           S+   +V       + S V  +P  +  S+  ++ ++    E++ A    I+        
Sbjct: 402 SDVMVVV---NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 532 ------------------LPFH-KHQRLDGSLETTRS---DFRWVNQRVLKH---APCSV 566
                             +  H K+      +   R    DFR++ Q+ ++H   A  + 
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNAS 517

Query: 567 GILID 571
           G +++
Sbjct: 518 GSILN 522

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		758
1zcd_A		388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	99.88
3mt0_A		290	Uncharacterized protein PA1789; structural genomic	99.76
3loq_A		294	Universal stress protein; structural genomics, PSI	99.73
3olq_A		319	Universal stress protein E; structural genomics, P	99.71
3cis_A		309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.69
3ab8_A		268	Putative uncharacterized protein TTHA0350; tandem-	99.67
3s3t_A		146	Nucleotide-binding protein, universal stress PROT	99.21
1mjh_A		162	Protein (ATP-binding domain of protein MJ0577); hy	99.16
3fdx_A		143	Putative filament protein / universal stress PROT;	99.15
3hgm_A		147	Universal stress protein TEAD; rossman fold, signa	99.14
3dlo_A		155	Universal stress protein; unknown function, struct	99.09
1tq8_A		163	Hypothetical protein RV1636; MTCY01B2.28, structur	99.09
2dum_A		170	Hypothetical protein PH0823; conserved hypothetica	99.09
3fg9_A		156	Protein of universal stress protein USPA family; A	99.09
2z08_A		137	Universal stress protein family; uncharacterized c	99.06
3tnj_A		150	Universal stress protein (USP); structural genomic	99.03
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	99.0
1jmv_A		141	USPA, universal stress protein A; chaperone; 1.85A	99.0
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	99.0
1q77_A		138	Hypothetical protein AQ_178; structural genomics,	98.78
3mt0_A		290	Uncharacterized protein PA1789; structural genomic	98.69
3olq_A		319	Universal stress protein E; structural genomics, P	98.55
3loq_A		294	Universal stress protein; structural genomics, PSI	98.54
3cis_A		309	Uncharacterized protein; alpha/beta hydrolase, ATP	98.36
3s3t_A		146	Nucleotide-binding protein, universal stress PROT	98.35
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	98.26
3dlo_A		155	Universal stress protein; unknown function, struct	98.26
3hgm_A		147	Universal stress protein TEAD; rossman fold, signa	98.22
1tq8_A		163	Hypothetical protein RV1636; MTCY01B2.28, structur	98.16
2dum_A		170	Hypothetical protein PH0823; conserved hypothetica	98.15
1mjh_A		162	Protein (ATP-binding domain of protein MJ0577); hy	98.14
2z08_A		137	Universal stress protein family; uncharacterized c	98.12
3tnj_A		150	Universal stress protein (USP); structural genomic	98.06
3ab8_A		268	Putative uncharacterized protein TTHA0350; tandem-	98.06
3fdx_A		143	Putative filament protein / universal stress PROT;	98.06
3fg9_A		156	Protein of universal stress protein USPA family; A	98.02
1jmv_A		141	USPA, universal stress protein A; chaperone; 1.85A	97.91
3zux_A		332	Transporter, ASBTNM; transport protein, membrane p	97.89
1q77_A		138	Hypothetical protein AQ_178; structural genomics,	97.77
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	97.71
3g40_A		294	Na-K-CL cotransporter; alpha/beta fold 10-stranded	95.94

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A	Back alignment and structure

Probab=99.88  E-value=1.2e-23  Score=226.89  Aligned_cols=285  Identities=19%  Similarity=0.200  Sum_probs=212.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCchhH----Hhccc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Q 004372           91 TVLDTLANLGLIFFMFLVGLELDPKSL----RQTGK--KALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMG  164 (758)
Q Consensus        91 ~~l~~l~~lgl~~~lF~~Gle~d~~~l----~~~~~--~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~  164 (758)
                      .....+.+-.+.+|||.+|+|+|.+.+    ++.+|  .+...++.|+++|++++..    +.    .+.   .......
T Consensus        58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~----~~----~~~---~~~~~gw  126 (388)
T 1zcd_A           58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA----FN----YAD---PITREGW  126 (388)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----GC----CSS---TTHHHHT
T ss_pred             cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH----Hh----cCC---hhhhhhh
Confidence            356788999999999999999998877    55444  4788899999999988421    11    111   1233444


Q ss_pred             HHHhhccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------CCCCchHH
Q 004372          165 VALSITAFPVLARILAELKL-LTADVGRMAMSAAAVNDVAAWILLALAVALSGS------------------GEPVEETY  225 (758)
Q Consensus       165 ~~ls~Ts~~vv~~iL~elkl-l~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~------------------~~~~~e~~  225 (758)
                      .+.+.|+.+....++..++. .++..++.+++.|++||+.+|++++++.+-..+                  +...+...
T Consensus       127 ~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt~~~~~~~l~~~~~~~~~~~~l~r~~v~~~~  206 (388)
T 1zcd_A          127 AIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGARRTG  206 (388)
T ss_dssp             SSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHTTCCCTH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            45667888888899998754 566777999999999999999999887531100                  33334444


Q ss_pred             HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHHHHHhHHHH-HHHhcccccchhhchh
Q 004372          226 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG----PFANALVEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGL  300 (758)
Q Consensus       226 ~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~----~~~~~l~~ki~~~~~~~~lPlf-F~~~G~~~dl~~l~~~  300 (758)
                      .+.++ . +.+.+.++..|+|+++|+|++|+++|+.+    +..+++++++++++..+++|+| |+..|.++|.......
T Consensus       207 ~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l  284 (388)
T 1zcd_A          207 VYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGL  284 (388)
T ss_dssp             HHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTH
T ss_pred             HHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhc
Confidence            44433 2 34556779999999999999999999743    5688999999999999999999 9999999997432211


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHHHHHHHHHHhhccCCc--cchhhHH
Q 004372          301 QSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKDRKV--LNDQVFA  368 (758)
Q Consensus       301 ~~~~~~~~ii~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~--i~~~~~~  368 (758)
                      .. .....+++..+++|++|++..++..          +++++|...+|++++.++++++++++.+++.+.  +.++.+.
T Consensus       285 ~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~laf~~~~~~~~~~ak~  363 (388)
T 1zcd_A          285 TS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAFGSVDPELINWAKL  363 (388)
T ss_dssp             HH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHHHSTTSSCSSHHHHHH
T ss_pred             cC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHHHHhccCCchhhHhhHHH
Confidence            11 1122455566999999966666555          899999999999999999999999999998876  3566688


Q ss_pred             HHHHHHHHHHHHHHHHHHHHc
Q 004372          369 IMILMAVVTTFMTTPLVMAVY  389 (758)
Q Consensus       369 ~lv~~~lv~t~i~~plv~~l~  389 (758)
                      .+++++++++.+.+.++++.+
T Consensus       364 ~il~~s~~s~i~g~~~L~~~~  384 (388)
T 1zcd_A          364 GILVGSISSAVIGYSWLRVRL  384 (388)
T ss_dssp             HHHHHHHTTTSTTTGGGTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            887888776666655554433

PyMOL of 1zcd

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}	Back alignment and structure

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*	Back alignment and structure

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*	Back alignment and structure

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0	Back alignment and structure

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4	Back alignment and structure

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*	Back alignment and structure

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0	Back alignment and structure

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*	Back alignment and structure

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4	Back alignment and structure

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}	Back alignment and structure

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A	Back alignment and structure

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*	Back alignment and structure

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4	Back alignment and structure

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4	Back alignment and structure

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}	Back alignment and structure

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4	Back alignment and structure

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}	Back alignment and structure

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*	Back alignment and structure

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0	Back alignment and structure

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}	Back alignment and structure

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*	Back alignment and structure

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0	Back alignment and structure

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4	Back alignment and structure

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4	Back alignment and structure

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A	Back alignment and structure

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*	Back alignment and structure

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*	Back alignment and structure

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*	Back alignment and structure

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}	Back alignment and structure

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4	Back alignment and structure

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*	Back alignment and structure

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4	Back alignment and structure

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4	Back alignment and structure

>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		758
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.27
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.24
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	99.12
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	99.06
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	98.97
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.62
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	98.41
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	98.25
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.15
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	98.06
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	97.99
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	96.82

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.27  E-value=1.1e-11  Score=116.43  Aligned_cols=144  Identities=18%  Similarity=0.172  Sum_probs=96.4

Q ss_pred             eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCC-CCcCCCC----CCCcchHH
Q 004372          414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGL-PFWNRGR----QSNPNHIV  488 (758)
Q Consensus       414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~-~~~~~~~----~~~~~~i~  488 (758)
                      .|||+|+++++....+++.+..++..   .+.+++++|+++................... ...+...    ....++..
T Consensus         4 ~~ILvavD~s~~s~~al~~a~~la~~---~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1mjha_           4 KKILYPTDFSETAEIALKHVKAFKTL---KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAK   80 (160)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTCCS---SCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHHHHHh---cCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999854   6779999999986543322111100000000 0000000    00011122


Q ss_pred             HHHHHh---hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCc
Q 004372          489 VAFEAF---QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCS  565 (758)
Q Consensus       489 ~af~~~---~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCs  565 (758)
                      +.++.+   .+..++.++..+..+   ++.+.||++|++.++|+||||.|++...++.+      +|++.++|++++|||
T Consensus        81 ~~l~~~~~~~~~~gv~~~~~~~~G---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~GS~a~~vl~~s~~p  151 (160)
T d1mjha_          81 NKMENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKSNKP  151 (160)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHhcCCeEEEEEEec---cHHHHHhhhhhccccceEEeccCCCCcccccc------cCcHHHHHHhcCCCC
Confidence            223333   233678888888877   89999999999999999999999987666554      789999999999999


Q ss_pred             eEEE
Q 004372          566 VGIL  569 (758)
Q Consensus       566 VgIl  569 (758)
                      |-|+
T Consensus       152 VlvV  155 (160)
T d1mjha_         152 VLVV  155 (160)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8664

PyMOL of d1mjha_

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure