Citrus Sinensis ID: 004387
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 757 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L831 | 772 | Nudix hydrolase 3 OS=Arab | yes | no | 0.989 | 0.970 | 0.711 | 0.0 | |
| Q97LV8 | 206 | Uncharacterized Nudix hyd | yes | no | 0.228 | 0.839 | 0.329 | 7e-16 | |
| Q8Y9Z9 | 169 | Uncharacterized Nudix hyd | yes | no | 0.211 | 0.946 | 0.320 | 7e-15 | |
| Q92ES1 | 169 | Uncharacterized Nudix hyd | yes | no | 0.196 | 0.881 | 0.321 | 1e-12 | |
| Q6D3F5 | 179 | Isopentenyl-diphosphate D | yes | no | 0.157 | 0.664 | 0.315 | 6e-09 | |
| A8GDW2 | 179 | Isopentenyl-diphosphate D | yes | no | 0.134 | 0.569 | 0.364 | 3e-08 | |
| Q9HUW9 | 169 | Uncharacterized Nudix hyd | yes | no | 0.171 | 0.769 | 0.308 | 1e-07 | |
| Q7X5H2 | 182 | Isopentenyl-diphosphate D | N/A | no | 0.159 | 0.664 | 0.282 | 1e-07 | |
| O42641 | 251 | Isopentenyl-diphosphate D | N/A | no | 0.174 | 0.525 | 0.293 | 3e-07 | |
| Q0TDW3 | 182 | Isopentenyl-diphosphate D | yes | no | 0.190 | 0.791 | 0.266 | 5e-07 |
| >sp|Q8L831|NUDT3_ARATH Nudix hydrolase 3 OS=Arabidopsis thaliana GN=NUDT3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1153 bits (2983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/773 (71%), Positives = 646/773 (83%), Gaps = 24/773 (3%)
Query: 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWP 65
+ EEH DVLT +G+KTG++KPR EVHR GDYHR V+ WIF E+TQ+LLLQ R+D KDSWP
Sbjct: 1 MAEEHFDVLTKSGEKTGVSKPRGEVHRDGDYHRAVHVWIFVETTQQLLLQLRSDDKDSWP 60
Query: 66 GMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEF 125
G WDISSAGHISAGD+SL+SAQREL+EELG+ LPKDAFE +F FLQ+ V NDGKFINNEF
Sbjct: 61 GQWDISSAGHISAGDTSLLSAQRELEEELGVKLPKDAFEKIFVFLQECVTNDGKFINNEF 120
Query: 126 ADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGGYGQLFN 185
DVYLVT L+PIPLEAFTLQ+ EVSAVKY+ YEEY+N L+K+DP++VPYDVNG YG+LF+
Sbjct: 121 NDVYLVTILHPIPLEAFTLQKEEVSAVKYVPYEEYRNFLSKEDPAYVPYDVNGEYGKLFD 180
Query: 186 IISQRYKENTMERSLTLQKQLRRYAHVSLNAELAGLSDADKEALVLVIKAATVMDEIFYL 245
II QR + NT RSL+LQKQL+RY+ V+L A+L LS+AD++AL L++KAA +MD+IFY
Sbjct: 181 IIRQRCQVNTEARSLSLQKQLQRYSPVTLEAKLTELSEADQKALGLIVKAAKIMDDIFYE 240
Query: 246 QVWYSNPVLRDWLKEHADASELDKLKWMYYLINKSPWSSLDENEAFLTTADSAVKLLPDA 305
QVW SNP LRDWLK+HA+AS+LDKLKW Y+ INKSPWSSLDENEAFL+TADSAVKLLP A
Sbjct: 241 QVWNSNPALRDWLKDHANASKLDKLKWDYFTINKSPWSSLDENEAFLSTADSAVKLLPGA 300
Query: 306 TKPVNGWKGLEYKASFPLPKPPGANFYPPDMDKMEFELWKSSLTEKQQEDATSFFTVIKR 365
TK + GWKGLEY+A+FP+ KPPGANFYPPDMDKMEF LW + LTE+Q+ AT FF+VIKR
Sbjct: 301 TKAIAGWKGLEYRAAFPVTKPPGANFYPPDMDKMEFTLWLNGLTEEQKHAATGFFSVIKR 360
Query: 366 RSEFNLDSSLSGHIVDATNHSVGSIYDLYSVPYSEEYNSYLTRASELLHKAGDMASSPSL 425
RSE NLD+ S H+ +T S DLYS+PYSE Y +L +ASE L KAGD+ SSPSL
Sbjct: 361 RSEANLDA--SDHLASSTKKLPDSNSDLYSIPYSEIYRPFLKKASEFLQKAGDLVSSPSL 418
Query: 426 KRLLHSKADAFLSNNYYDSDIAWIEL----------------------ATFEAFIGIRDD 463
K+LLHSKA+AFLSN YY+SDIAW++L ATFE FIGIRDD
Sbjct: 419 KKLLHSKAEAFLSNEYYESDIAWMDLDSKLDITIGPYETYEDEIFGYKATFETFIGIRDD 478
Query: 464 KATAQVKLFGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPN 523
KATA +KLFGDNL++LE NLP+++ YKS DV AAPIRVIQLIYNSGDVKGPQTVA+NLPN
Sbjct: 479 KATADLKLFGDNLKLLEDNLPLESVYKSTDVSAAPIRVIQLIYNSGDVKGPQTVAYNLPN 538
Query: 524 DERIVKDRGTSMVMLKNVSEAKFKNILRPIADVCIRKEQQELVDFDSFFTHNICHECCHG 583
DE+IVKDRGTSMVMLKNV EAKF++IL+PIA++ I KEQ+ LVDFDSFFTH ICHECCHG
Sbjct: 539 DEKIVKDRGTSMVMLKNVQEAKFEHILKPIAEITISKEQRGLVDFDSFFTHTICHECCHG 598
Query: 584 IGPHSITLPDGRQSTVRLELQELHSAMEEAKADIVGLWALKFLIGRDLLPKSLVKSMYVS 643
IGPH+ITLP G+ STVR ELQE+HSAMEEAKADIVGLWALKFLI + LL KS+V+SMYVS
Sbjct: 599 IGPHTITLPGGQTSTVRKELQEVHSAMEEAKADIVGLWALKFLITKGLLSKSMVESMYVS 658
Query: 644 FLAGCFRSVRFGLEESHGKGQALQFNWLFEKEAFILHSDDTFSVDFDKVEGAVESLSTEI 703
FLAGCFRS+RFGL E+HGKGQALQFN+L+EK AF+ H D TFSVDF K+EGAVESLS EI
Sbjct: 659 FLAGCFRSIRFGLTEAHGKGQALQFNYLYEKGAFVFHEDSTFSVDFAKIEGAVESLSHEI 718
Query: 704 LTIQARGDKEAASLLLQKYCTMTQPLKVALQKLENVQVPVDIAPTFTAVNKLL 756
LTIQ +GDK AA+LLL KYCT+T PLK AL+ LE V+VPVDI+PTF L+
Sbjct: 719 LTIQGKGDKNAATLLLNKYCTITGPLKTALENLERVKVPVDISPTFPLAEALM 771
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Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: - |
| >sp|Q97LV8|Y446_CLOAB Uncharacterized Nudix hydrolase CA_C0446 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=CA_C0446 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8Y9Z9|Y368_LISMO Uncharacterized Nudix hydrolase lmo0368 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=lmo0368 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q92ES1|Y387_LISIN Uncharacterized Nudix hydrolase lin0387 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=lin0387 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6D3F5|IDI_ERWCT Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=idi PE=3 SV=1 | Back alignment and function description |
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| >sp|A8GDW2|IDI_SERP5 Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans (strain 568) GN=idi PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9HUW9|Y4841_PSEAE Uncharacterized Nudix hydrolase PA4841 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA4841 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q7X5H2|IDI_CITFR Isopentenyl-diphosphate Delta-isomerase OS=Citrobacter freundii GN=idi PE=3 SV=1 | Back alignment and function description |
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| >sp|O42641|IDI1_PHARH Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1 | Back alignment and function description |
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| >sp|Q0TDW3|IDI_ECOL5 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=idi PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 757 | ||||||
| 225443237 | 782 | PREDICTED: nudix hydrolase 3-like [Vitis | 0.998 | 0.966 | 0.766 | 0.0 | |
| 298204759 | 765 | unnamed protein product [Vitis vinifera] | 0.972 | 0.962 | 0.753 | 0.0 | |
| 224108599 | 752 | predicted protein [Populus trichocarpa] | 0.964 | 0.970 | 0.782 | 0.0 | |
| 356549922 | 768 | PREDICTED: nudix hydrolase 3-like [Glyci | 0.980 | 0.966 | 0.743 | 0.0 | |
| 449436201 | 786 | PREDICTED: nudix hydrolase 3-like [Cucum | 0.998 | 0.961 | 0.732 | 0.0 | |
| 18412472 | 772 | nudix hydrolase 3 [Arabidopsis thaliana] | 0.989 | 0.970 | 0.711 | 0.0 | |
| 449436199 | 783 | PREDICTED: nudix hydrolase 3-like [Cucum | 0.996 | 0.962 | 0.706 | 0.0 | |
| 297839837 | 792 | hypothetical protein ARALYDRAFT_477144 [ | 0.989 | 0.945 | 0.698 | 0.0 | |
| 242063356 | 775 | hypothetical protein SORBIDRAFT_04g03568 | 0.984 | 0.961 | 0.690 | 0.0 | |
| 326495548 | 776 | predicted protein [Hordeum vulgare subsp | 0.984 | 0.960 | 0.687 | 0.0 |
| >gi|225443237|ref|XP_002271902.1| PREDICTED: nudix hydrolase 3-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1261 bits (3263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/778 (76%), Positives = 681/778 (87%), Gaps = 22/778 (2%)
Query: 1 MAESVVQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADF 60
MAE ++ EEH DVLT TGQ+TG++KPR +VHR GDYH V+ WIF+ESTQELLLQRRAD
Sbjct: 1 MAEPLLHEEHFDVLTKTGQRTGLSKPRGDVHRDGDYHAAVHVWIFSESTQELLLQRRADC 60
Query: 61 KDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKF 120
KDSWPG+WDISSAGHISAGDSSLI+A+REL EELG+ LPKDAFEF+F FLQ+ VINDGKF
Sbjct: 61 KDSWPGLWDISSAGHISAGDSSLITARRELHEELGVILPKDAFEFLFVFLQECVINDGKF 120
Query: 121 INNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGGY 180
INNEF DVYLVTTL PIPLEAFTLQ++EVSAVKYI+ EEYK LLAK+DP +VPYDVNG Y
Sbjct: 121 INNEFNDVYLVTTLAPIPLEAFTLQESEVSAVKYISCEEYKRLLAKEDPEYVPYDVNGKY 180
Query: 181 GQLFNIISQRYKENTMERSLTLQKQLRRYAHVSLNAELAGLSDADKEALVLVIKAATVMD 240
GQLF+II+QRYKEN ERSLTLQKQLRRY +SL AE+ G++DADK+ALVL+++AAT++D
Sbjct: 181 GQLFDIIAQRYKENMEERSLTLQKQLRRYVPISLEAEMTGVTDADKKALVLLVQAATIID 240
Query: 241 EIFYLQVWYSNPVLRDWLKEHADASELDKLKWMYYLINKSPWSSLDENEAFLTTADSAVK 300
+IF LQVWYSNP+L+DWLKEHAD S LDKLKWMYYLINKSPWS LDEN+AFLTTADSAVK
Sbjct: 241 DIFNLQVWYSNPILKDWLKEHADTSHLDKLKWMYYLINKSPWSCLDENKAFLTTADSAVK 300
Query: 301 LLPDATKPVNGWKGLEYKASFPLPKPPGANFYPPDMDKMEFELWKSSLTEKQQEDATSFF 360
LLP+ATK + GWKGLEY+A+FPL KPPGANFYPPDMDKMEFELWK SL + +QEDAT FF
Sbjct: 301 LLPEATKSITGWKGLEYRAAFPLMKPPGANFYPPDMDKMEFELWKGSLAKDKQEDATGFF 360
Query: 361 TVIKRRSEFNLDSSLSGHIVDATNHSVGSIYDLYSVPYSEEYNSYLTRASELLHKAGDMA 420
+VI+R EF LD+SLS + V+ T+ VGS +DLYS+P+S+EY +L +A+ELLHKAGD+
Sbjct: 361 SVIRRHGEFMLDASLSNNTVEGTDDLVGSTHDLYSIPFSQEYKPFLKKAAELLHKAGDLT 420
Query: 421 SSPSLKRLLHSKADAFLSNNYYDSDIAWIEL----------------------ATFEAFI 458
SPSLKRLLHSKADAFLSN Y DSDIAW+EL ATFEAFI
Sbjct: 421 DSPSLKRLLHSKADAFLSNEYIDSDIAWMELDSKLDVTIGPYETYEDTLFGYKATFEAFI 480
Query: 459 GIRDDKATAQVKLFGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVA 518
G+RDD ATAQ+KLFGDNLQVLEQNLPMD+ YKSK+VIAAPIRVIQL+YN+GDVKGPQTVA
Sbjct: 481 GVRDDHATAQLKLFGDNLQVLEQNLPMDDVYKSKEVIAAPIRVIQLVYNAGDVKGPQTVA 540
Query: 519 FNLPNDERIVKDRGTSMVMLKNVSEAKFKNILRPIADVCIRKEQQELVDFDSFFTHNICH 578
FNLPNDERIVKDRGTSMVMLKNVSEAKFKNILRPIA+ CI KEQQ+ VDF+SFFTH ICH
Sbjct: 541 FNLPNDERIVKDRGTSMVMLKNVSEAKFKNILRPIAEACITKEQQKYVDFESFFTHTICH 600
Query: 579 ECCHGIGPHSITLPDGRQSTVRLELQELHSAMEEAKADIVGLWALKFLIGRDLLPKSLVK 638
ECCHGIGPH+I LP+G++STVRLELQELHS++EEAKADIVGLWAL+FLIG+DLL KSL+K
Sbjct: 601 ECCHGIGPHTIILPNGQKSTVRLELQELHSSLEEAKADIVGLWALRFLIGQDLLSKSLLK 660
Query: 639 SMYVSFLAGCFRSVRFGLEESHGKGQALQFNWLFEKEAFILHSDDTFSVDFDKVEGAVES 698
SMYVSFLAGCFRSVRFGLEE+HGKGQALQFNW+FEK FILH D+TFSVDF K+EGAVES
Sbjct: 661 SMYVSFLAGCFRSVRFGLEEAHGKGQALQFNWVFEKGGFILHPDETFSVDFAKIEGAVES 720
Query: 699 LSTEILTIQARGDKEAASLLLQKYCTMTQPLKVALQKLENVQVPVDIAPTFTAVNKLL 756
LS EILTIQA+GDK AA LL+KY MTQPL+VAL+KLEN+QVPVDIAP F +K+L
Sbjct: 721 LSREILTIQAKGDKPAAYALLEKYAKMTQPLRVALEKLENIQVPVDIAPRFPIADKIL 778
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204759|emb|CBI25257.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224108599|ref|XP_002333368.1| predicted protein [Populus trichocarpa] gi|222836350|gb|EEE74757.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356549922|ref|XP_003543339.1| PREDICTED: nudix hydrolase 3-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449436201|ref|XP_004135882.1| PREDICTED: nudix hydrolase 3-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|18412472|ref|NP_565218.1| nudix hydrolase 3 [Arabidopsis thaliana] gi|68565909|sp|Q8L831.1|NUDT3_ARATH RecName: Full=Nudix hydrolase 3; Short=AtNUDT3 gi|21539559|gb|AAM53332.1| unknown protein [Arabidopsis thaliana] gi|23197868|gb|AAN15461.1| unknown protein [Arabidopsis thaliana] gi|332198166|gb|AEE36287.1| nudix hydrolase 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449436199|ref|XP_004135881.1| PREDICTED: nudix hydrolase 3-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297839837|ref|XP_002887800.1| hypothetical protein ARALYDRAFT_477144 [Arabidopsis lyrata subsp. lyrata] gi|297333641|gb|EFH64059.1| hypothetical protein ARALYDRAFT_477144 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|242063356|ref|XP_002452967.1| hypothetical protein SORBIDRAFT_04g035685 [Sorghum bicolor] gi|241932798|gb|EES05943.1| hypothetical protein SORBIDRAFT_04g035685 [Sorghum bicolor] | Back alignment and taxonomy information |
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| >gi|326495548|dbj|BAJ85870.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 757 | ||||||
| TAIR|locus:2019848 | 772 | NUDT3 "nudix hydrolase homolog | 0.608 | 0.597 | 0.683 | 1.8e-302 | |
| UNIPROTKB|Q486U4 | 576 | CPS_1178 "Putative uncharacter | 0.540 | 0.710 | 0.326 | 1.4e-62 | |
| TIGR_CMR|CPS_1178 | 576 | CPS_1178 "lipoprotein, putativ | 0.540 | 0.710 | 0.326 | 1.4e-62 | |
| DICTYBASE|DDB_G0269784 | 201 | DDB_G0269784 "Uncharacterized | 0.252 | 0.950 | 0.366 | 6.1e-30 | |
| TIGR_CMR|BA_1964 | 202 | BA_1964 "mutT/nudix family pro | 0.190 | 0.712 | 0.307 | 3.3e-12 | |
| UNIPROTKB|Q46822 | 182 | idi [Escherichia coli K-12 (ta | 0.171 | 0.714 | 0.274 | 1.1e-08 | |
| TIGR_CMR|CBU_0607 | 503 | CBU_0607 "diphosphomevalonate | 0.207 | 0.312 | 0.296 | 1.8e-08 | |
| TIGR_CMR|SPO_0131 | 180 | SPO_0131 "isopentyl-diphosphat | 0.182 | 0.766 | 0.267 | 3.2e-06 | |
| ASPGD|ASPL0000061206 | 268 | AN0579 [Emericella nidulans (t | 0.177 | 0.5 | 0.301 | 4.1e-06 | |
| TAIR|locus:2075412 | 284 | IPP2 "isopentenyl pyrophosphat | 0.165 | 0.440 | 0.319 | 8.2e-06 |
| TAIR|locus:2019848 NUDT3 "nudix hydrolase homolog 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1681 (596.8 bits), Expect = 1.8e-302, Sum P(2) = 1.8e-302
Identities = 319/467 (68%), Positives = 387/467 (82%)
Query: 8 EEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGM 67
EEH DVLT +G+KTG++KPR EVHR GDYHR V+ WIF E+TQ+LLLQ R+D KDSWPG
Sbjct: 3 EEHFDVLTKSGEKTGVSKPRGEVHRDGDYHRAVHVWIFVETTQQLLLQLRSDDKDSWPGQ 62
Query: 68 WDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFAD 127
WDISSAGHISAGD+SL+SAQREL+EELG+ LPKDAFE +F FLQ+ V NDGKFINNEF D
Sbjct: 63 WDISSAGHISAGDTSLLSAQRELEEELGVKLPKDAFEKIFVFLQECVTNDGKFINNEFND 122
Query: 128 VYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGGYGQLFNII 187
VYLVT L+PIPLEAFTLQ+ EVSAVKY+ YEEY+N L+K+DP++VPYDVNG YG+LF+II
Sbjct: 123 VYLVTILHPIPLEAFTLQKEEVSAVKYVPYEEYRNFLSKEDPAYVPYDVNGEYGKLFDII 182
Query: 188 SQRYKENTMERSLTLQKQLRRYAHVSLNAELAGLSDADKEALVLVIKAATVMDEIFYLQV 247
QR + NT RSL+LQKQL+RY+ V+L A+L LS+AD++AL L++KAA +MD+IFY QV
Sbjct: 183 RQRCQVNTEARSLSLQKQLQRYSPVTLEAKLTELSEADQKALGLIVKAAKIMDDIFYEQV 242
Query: 248 WYSNPVLRDWLKEHADASELDKLKWMYYLINKSPWSSLDENEAFLTTADSAVKLLPDATK 307
W SNP LRDWLK+HA+AS+LDKLKW Y+ INKSPWSSLDENEAFL+TADSAVKLLP ATK
Sbjct: 243 WNSNPALRDWLKDHANASKLDKLKWDYFTINKSPWSSLDENEAFLSTADSAVKLLPGATK 302
Query: 308 PVNGWKGLEYKASFPLPKPPGANFYPPDMDKMEFELWKSSLTEKQQEDATSFFTVIKRRS 367
+ GWKGLEY+A+FP+ KPPGANFYPPDMDKMEF LW + LTE+Q+ AT FF+VIKRRS
Sbjct: 303 AIAGWKGLEYRAAFPVTKPPGANFYPPDMDKMEFTLWLNGLTEEQKHAATGFFSVIKRRS 362
Query: 368 EFNLDSSLSGHIVDATNHSVGSIYDLYSVPYSEEYNSYLTRASELLHKAGDMASSPSLKR 427
E NLD+S H+ +T S DLYS+PYSE Y +L +ASE L KAGD+ SSPSLK+
Sbjct: 363 EANLDAS--DHLASSTKKLPDSNSDLYSIPYSEIYRPFLKKASEFLQKAGDLVSSPSLKK 420
Query: 428 LLHSKADAFLSNNYYDSDIAWIEL-ATFEAFIGIRDDKATAQVKLFG 473
LLHSKA+AFLSN YY+SDIAW++L + + IG + T + ++FG
Sbjct: 421 LLHSKAEAFLSNEYYESDIAWMDLDSKLDITIGPYE---TYEDEIFG 464
|
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| UNIPROTKB|Q486U4 CPS_1178 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CPS_1178 CPS_1178 "lipoprotein, putative" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0269784 DDB_G0269784 "Uncharacterized Nudix hydrolase yfcD" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_1964 BA_1964 "mutT/nudix family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q46822 idi [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CBU_0607 CBU_0607 "diphosphomevalonate decarboxylase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SPO_0131 SPO_0131 "isopentyl-diphosphate delta-isomerase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000061206 AN0579 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| TAIR|locus:2075412 IPP2 "isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8L831 | NUDT3_ARATH | 3, ., 6, ., 1, ., - | 0.7115 | 0.9894 | 0.9702 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 757 | |||
| PLN02791 | 770 | PLN02791, PLN02791, Nudix hydrolase homolog | 0.0 | |
| cd04692 | 144 | cd04692, Nudix_Hydrolase_33, Members of the Nudix | 4e-55 | |
| cd04693 | 127 | cd04693, Nudix_Hydrolase_34, Members of the Nudix | 2e-23 | |
| cd02885 | 165 | cd02885, IPP_Isomerase, Isopentenyl diphosphate (I | 4e-18 | |
| COG1443 | 185 | COG1443, Idi, Isopentenyldiphosphate isomerase [Li | 9e-17 | |
| TIGR02150 | 158 | TIGR02150, IPP_isom_1, isopentenyl-diphosphate del | 2e-15 | |
| cd04697 | 126 | cd04697, Nudix_Hydrolase_38, Members of the Nudix | 4e-13 | |
| pfam00293 | 133 | pfam00293, NUDIX, NUDIX domain | 7e-12 | |
| PRK03759 | 184 | PRK03759, PRK03759, isopentenyl-diphosphate delta- | 3e-11 | |
| cd02883 | 123 | cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup | 5e-10 | |
| cd04682 | 122 | cd04682, Nudix_Hydrolase_23, Members of the Nudix | 1e-08 | |
| PLN02552 | 247 | PLN02552, PLN02552, isopentenyl-diphosphate delta- | 2e-08 | |
| PRK15393 | 180 | PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisio | 3e-08 | |
| cd03676 | 180 | cd03676, Nudix_hydrolase_3, Members of the Nudix h | 1e-06 | |
| cd04691 | 117 | cd04691, Nudix_Hydrolase_32, Members of the Nudix | 6e-06 | |
| COG0494 | 161 | COG0494, MutT, NTP pyrophosphohydrolases including | 1e-05 | |
| cd04690 | 118 | cd04690, Nudix_Hydrolase_31, Members of the Nudix | 1e-05 | |
| cd04694 | 143 | cd04694, Nudix_Hydrolase_35, Members of the Nudix | 1e-05 | |
| cd04683 | 120 | cd04683, Nudix_Hydrolase_24, Members of the Nudix | 4e-05 | |
| cd04664 | 129 | cd04664, Nudix_Hydrolase_7, Members of the Nudix h | 6e-05 | |
| cd04670 | 127 | cd04670, Nudix_Hydrolase_12, Members of the Nudix | 1e-04 | |
| PRK09438 | 148 | PRK09438, nudB, dihydroneopterin triphosphate pyro | 2e-04 | |
| cd04677 | 132 | cd04677, Nudix_Hydrolase_18, Members of the Nudix | 3e-04 | |
| cd04681 | 130 | cd04681, Nudix_Hydrolase_22, Members of the Nudix | 4e-04 | |
| cd03426 | 157 | cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse) | 0.001 | |
| PRK08999 | 312 | PRK08999, PRK08999, hypothetical protein; Provisio | 0.001 | |
| cd04699 | 129 | cd04699, Nudix_Hydrolase_39, Members of the Nudix | 0.002 |
| >gnl|CDD|215425 PLN02791, PLN02791, Nudix hydrolase homolog | Back alignment and domain information |
|---|
Score = 1414 bits (3662), Expect = 0.0
Identities = 582/771 (75%), Positives = 658/771 (85%), Gaps = 26/771 (3%)
Query: 8 EEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGM 67
EEHLDVLT G+KTG++KPR EVHR GDYHR V+ WI++ESTQELLLQRRAD KDSWPG
Sbjct: 3 EEHLDVLTAAGEKTGVSKPRGEVHRDGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQ 62
Query: 68 WDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFAD 127
WDISSAGHISAGD+SL+SAQREL+EELGI LPKDAFE +F FLQ+ VINDGKFINNE+ D
Sbjct: 63 WDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVINDGKFINNEYND 122
Query: 128 VYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYDVNGGYGQLFNII 187
VYLVTTL+PIPLEAFTLQ++EVSAVKY++ EEYK+ LAK+DP++VPYDVNG YGQLF+II
Sbjct: 123 VYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALAKEDPAYVPYDVNGEYGQLFSII 182
Query: 188 SQRYKENTMERSLTLQKQLRRYAHVSLNAELAGLSDADKEALVLVIKAATVMDEIFYLQV 247
+RYK NT RSLTLQKQL RYA V+L AEL GLS+ D++AL +IKAA ++D+IFY QV
Sbjct: 183 EKRYKVNTEARSLTLQKQLNRYAPVNLEAELTGLSEGDRKALSYIIKAAKILDDIFYEQV 242
Query: 248 WYSNPVLRDWLKEHADASELDKLKWMYYLINKSPWSSLDENEAFLTTADSAVKLLPDATK 307
W SNP LRDWLK HA+ASELDKLKW YY INKSPWS LDENEAFLTTADSAVKLLP ATK
Sbjct: 243 WNSNPALRDWLKAHAEASELDKLKWAYYSINKSPWSCLDENEAFLTTADSAVKLLPGATK 302
Query: 308 PVNGWKGLEYKASFPLPKPPGANFYPPDMDKMEFELWKSSLTEKQQEDATSFFTVIKRRS 367
V+GWKGLEY+A+FP+ KPPGANFYPPDMDKMEFELWKS LTEK+QEDAT FFTVIKR S
Sbjct: 303 SVSGWKGLEYRAAFPVEKPPGANFYPPDMDKMEFELWKSGLTEKEQEDATGFFTVIKRHS 362
Query: 368 EFNLDSSLSGHIVDATNHSVGSIYDLYSVPYSEEYNSYLTRASELLHKAGDMASSPSLKR 427
E +LD+S T + +DL+SVPYSEEY +L +A+ELLHKAGD A SPSLKR
Sbjct: 363 ELSLDASDQLDGSTQT----DTSHDLFSVPYSEEYKPFLKKAAELLHKAGDCADSPSLKR 418
Query: 428 LLHSKADAFLSNNYYDSDIAWIEL----------------------ATFEAFIGIRDDKA 465
LL SKA+AFLSN+YY+SDIAW+EL ATFEAFIGIRDDKA
Sbjct: 419 LLKSKAEAFLSNDYYESDIAWMELDSKLDVTIGPYETYEDGLFGYKATFEAFIGIRDDKA 478
Query: 466 TAQVKLFGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDE 525
TAQ+KLFGDNLQ LE NLP+D+ YKS +V AAPIRVIQL+YNSGDVKGPQTVAFNLPNDE
Sbjct: 479 TAQLKLFGDNLQTLEDNLPLDDVYKSTNVSAAPIRVIQLLYNSGDVKGPQTVAFNLPNDE 538
Query: 526 RIVKDRGTSMVMLKNVSEAKFKNILRPIADVCIRKEQQELVDFDSFFTHNICHECCHGIG 585
RIVK+RGTSMVMLKNVSEAKFK+IL+PIA+VCI +EQ+ VDF+SFFTH ICHECCHGIG
Sbjct: 539 RIVKERGTSMVMLKNVSEAKFKHILKPIAEVCISEEQKGYVDFESFFTHTICHECCHGIG 598
Query: 586 PHSITLPDGRQSTVRLELQELHSAMEEAKADIVGLWALKFLIGRDLLPKSLVKSMYVSFL 645
PH+ITLPDG++STVRLELQE+HSA+EEAKADIVGLWAL FLI + LL KSL KSMYVSFL
Sbjct: 599 PHTITLPDGQKSTVRLELQEVHSALEEAKADIVGLWALHFLIDKGLLSKSLEKSMYVSFL 658
Query: 646 AGCFRSVRFGLEESHGKGQALQFNWLFEKEAFILHSDDTFSVDFDKVEGAVESLSTEILT 705
AGCFRS+RFGLEE+HGKGQALQFNWL+EK AF+LHSD TFSVDF KVE AVESLS EILT
Sbjct: 659 AGCFRSIRFGLEEAHGKGQALQFNWLYEKGAFVLHSDGTFSVDFAKVEDAVESLSREILT 718
Query: 706 IQARGDKEAASLLLQKYCTMTQPLKVALQKLENVQVPVDIAPTFTAVNKLL 756
IQA+GDK AA LLQKY T+T PL+VAL+KLE+VQVPVDI PTF KLL
Sbjct: 719 IQAKGDKAAAISLLQKYATLTPPLRVALEKLEDVQVPVDIVPTFPTAEKLL 769
|
Length = 770 |
| >gnl|CDD|240048 cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >gnl|CDD|240049 cd04693, Nudix_Hydrolase_34, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >gnl|CDD|239218 cd02885, IPP_Isomerase, Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway | Back alignment and domain information |
|---|
| >gnl|CDD|224360 COG1443, Idi, Isopentenyldiphosphate isomerase [Lipid metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|233749 TIGR02150, IPP_isom_1, isopentenyl-diphosphate delta-isomerase, type 1 | Back alignment and domain information |
|---|
| >gnl|CDD|240053 cd04697, Nudix_Hydrolase_38, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain | Back alignment and domain information |
|---|
| >gnl|CDD|235156 PRK03759, PRK03759, isopentenyl-diphosphate delta-isomerase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >gnl|CDD|215303 PLN02552, PLN02552, isopentenyl-diphosphate delta-isomerase | Back alignment and domain information |
|---|
| >gnl|CDD|185291 PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|239648 cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes | Back alignment and domain information |
|---|
| >gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 757 | |||
| PLN02791 | 770 | Nudix hydrolase homolog | 100.0 | |
| PF03571 | 549 | Peptidase_M49: Peptidase family M49; InterPro: IPR | 100.0 | |
| KOG3675 | 417 | consensus Dipeptidyl peptidase III [General functi | 100.0 | |
| cd02885 | 165 | IPP_Isomerase Isopentenyl diphosphate (IPP) isomer | 99.93 | |
| PLN02552 | 247 | isopentenyl-diphosphate delta-isomerase | 99.93 | |
| cd03676 | 180 | Nudix_hydrolase_3 Members of the Nudix hydrolase s | 99.93 | |
| PRK03759 | 184 | isopentenyl-diphosphate delta-isomerase; Provision | 99.92 | |
| TIGR02150 | 158 | IPP_isom_1 isopentenyl-diphosphate delta-isomerase | 99.91 | |
| COG1443 | 185 | Idi Isopentenyldiphosphate isomerase [Lipid metabo | 99.89 | |
| PRK15393 | 180 | NUDIX hydrolase YfcD; Provisional | 99.87 | |
| cd04692 | 144 | Nudix_Hydrolase_33 Members of the Nudix hydrolase | 99.85 | |
| PLN02839 | 372 | nudix hydrolase | 99.79 | |
| KOG0142 | 225 | consensus Isopentenyl pyrophosphate:dimethylallyl | 99.76 | |
| cd04693 | 127 | Nudix_Hydrolase_34 Members of the Nudix hydrolase | 99.75 | |
| cd04697 | 126 | Nudix_Hydrolase_38 Members of the Nudix hydrolase | 99.74 | |
| cd04682 | 122 | Nudix_Hydrolase_23 Members of the Nudix hydrolase | 99.68 | |
| PRK15434 | 159 | GDP-mannose mannosyl hydrolase NudD; Provisional | 99.66 | |
| cd03430 | 144 | GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann | 99.65 | |
| PRK15472 | 141 | nucleoside triphosphatase NudI; Provisional | 99.65 | |
| cd04679 | 125 | Nudix_Hydrolase_20 Members of the Nudix hydrolase | 99.63 | |
| cd04683 | 120 | Nudix_Hydrolase_24 Members of the Nudix hydrolase | 99.63 | |
| PF00293 | 134 | NUDIX: NUDIX domain; InterPro: IPR000086 The gener | 99.61 | |
| cd04684 | 128 | Nudix_Hydrolase_25 Contains a crystal structure of | 99.61 | |
| cd04673 | 122 | Nudix_Hydrolase_15 Members of the Nudix hydrolase | 99.61 | |
| cd03426 | 157 | CoAse Coenzyme A pyrophosphatase (CoAse), a member | 99.6 | |
| cd04700 | 142 | DR1025_like DR1025 from Deinococcus radiodurans, a | 99.6 | |
| cd04694 | 143 | Nudix_Hydrolase_35 Members of the Nudix hydrolase | 99.6 | |
| cd04678 | 129 | Nudix_Hydrolase_19 Members of the Nudix hydrolase | 99.59 | |
| cd03671 | 147 | Ap4A_hydrolase_plant_like Diadenosine tetraphospha | 99.58 | |
| cd04696 | 125 | Nudix_Hydrolase_37 Members of the Nudix hydrolase | 99.58 | |
| cd04681 | 130 | Nudix_Hydrolase_22 Members of the Nudix hydrolase | 99.58 | |
| cd04691 | 117 | Nudix_Hydrolase_32 Members of the Nudix hydrolase | 99.58 | |
| cd03424 | 137 | ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) | 99.58 | |
| cd04664 | 129 | Nudix_Hydrolase_7 Members of the Nudix hydrolase s | 99.57 | |
| cd04687 | 128 | Nudix_Hydrolase_28 Members of the Nudix hydrolase | 99.57 | |
| PRK09438 | 148 | nudB dihydroneopterin triphosphate pyrophosphatase | 99.56 | |
| cd03674 | 138 | Nudix_Hydrolase_1 Members of the Nudix hydrolase s | 99.55 | |
| cd03673 | 131 | Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy | 99.54 | |
| cd04677 | 132 | Nudix_Hydrolase_18 Members of the Nudix hydrolase | 99.53 | |
| PLN02325 | 144 | nudix hydrolase | 99.52 | |
| cd04680 | 120 | Nudix_Hydrolase_21 Members of the Nudix hydrolase | 99.52 | |
| cd03427 | 137 | MTH1 MutT homolog-1 (MTH1) is a member of the Nudi | 99.52 | |
| cd04689 | 125 | Nudix_Hydrolase_30 Members of the Nudix hydrolase | 99.52 | |
| cd04699 | 129 | Nudix_Hydrolase_39 Members of the Nudix hydrolase | 99.52 | |
| cd04670 | 127 | Nudix_Hydrolase_12 Members of the Nudix hydrolase | 99.5 | |
| cd04688 | 126 | Nudix_Hydrolase_29 Members of the Nudix hydrolase | 99.5 | |
| cd03429 | 131 | NADH_pyrophosphatase NADH pyrophosphatase, a membe | 99.5 | |
| PRK00714 | 156 | RNA pyrophosphohydrolase; Reviewed | 99.49 | |
| cd03675 | 134 | Nudix_Hydrolase_2 Contains a crystal structure of | 99.49 | |
| cd04690 | 118 | Nudix_Hydrolase_31 Members of the Nudix hydrolase | 99.49 | |
| cd04671 | 123 | Nudix_Hydrolase_13 Members of the Nudix hydrolase | 99.48 | |
| cd04695 | 131 | Nudix_Hydrolase_36 Members of the Nudix hydrolase | 99.47 | |
| cd03428 | 130 | Ap4A_hydrolase_human_like Diadenosine tetraphospha | 99.47 | |
| cd04676 | 129 | Nudix_Hydrolase_17 Members of the Nudix hydrolase | 99.46 | |
| cd04672 | 123 | Nudix_Hydrolase_14 Members of the Nudix hydrolase | 99.46 | |
| cd04685 | 133 | Nudix_Hydrolase_26 Members of the Nudix hydrolase | 99.46 | |
| COG1051 | 145 | ADP-ribose pyrophosphatase [Nucleotide transport a | 99.45 | |
| cd04666 | 122 | Nudix_Hydrolase_9 Members of the Nudix hydrolase s | 99.45 | |
| PRK10546 | 135 | pyrimidine (deoxy)nucleoside triphosphate pyrophos | 99.44 | |
| cd03672 | 145 | Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt | 99.43 | |
| cd04669 | 121 | Nudix_Hydrolase_11 Members of the Nudix hydrolase | 99.42 | |
| KOG4313 | 306 | consensus Thiamine pyrophosphokinase [Nucleotide t | 99.42 | |
| cd04667 | 112 | Nudix_Hydrolase_10 Members of the Nudix hydrolase | 99.42 | |
| PRK10776 | 129 | nucleoside triphosphate pyrophosphohydrolase; Prov | 99.41 | |
| cd03425 | 124 | MutT_pyrophosphohydrolase The MutT pyrophosphohydr | 99.4 | |
| PRK00241 | 256 | nudC NADH pyrophosphatase; Reviewed | 99.4 | |
| cd04686 | 131 | Nudix_Hydrolase_27 Members of the Nudix hydrolase | 99.4 | |
| cd04511 | 130 | Nudix_Hydrolase_4 Members of the Nudix hydrolase s | 99.39 | |
| cd02883 | 123 | Nudix_Hydrolase Nudix hydrolase is a superfamily o | 99.38 | |
| PRK05379 | 340 | bifunctional nicotinamide mononucleotide adenylylt | 99.38 | |
| cd04661 | 132 | MRP_L46 Mitochondrial ribosomal protein L46 (MRP L | 99.36 | |
| TIGR00586 | 128 | mutt mutator mutT protein. All proteins in this fa | 99.35 | |
| PRK10707 | 190 | putative NUDIX hydrolase; Provisional | 99.34 | |
| PRK11762 | 185 | nudE adenosine nucleotide hydrolase NudE; Provisio | 99.3 | |
| TIGR00052 | 185 | nudix-type nucleoside diphosphatase, YffH/AdpP fam | 99.29 | |
| cd04662 | 126 | Nudix_Hydrolase_5 Members of the Nudix hydrolase s | 99.26 | |
| PLN02709 | 222 | nudix hydrolase | 99.26 | |
| TIGR02705 | 156 | nudix_YtkD nucleoside triphosphatase YtkD. The fun | 99.25 | |
| PRK10729 | 202 | nudF ADP-ribose pyrophosphatase NudF; Provisional | 99.2 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 99.15 | |
| cd04665 | 118 | Nudix_Hydrolase_8 Members of the Nudix hydrolase s | 99.14 | |
| PRK15009 | 191 | GDP-mannose pyrophosphatase NudK; Provisional | 99.14 | |
| COG2816 | 279 | NPY1 NTP pyrophosphohydrolases containing a Zn-fin | 99.12 | |
| cd04674 | 118 | Nudix_Hydrolase_16 Members of the Nudix hydrolase | 99.03 | |
| KOG3084 | 345 | consensus NADH pyrophosphatase I of the Nudix fami | 98.88 | |
| cd03670 | 186 | ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) | 98.88 | |
| COG0494 | 161 | MutT NTP pyrophosphohydrolases including oxidative | 98.8 | |
| cd04663 | 126 | Nudix_Hydrolase_6 Members of the Nudix hydrolase s | 98.77 | |
| PLN03143 | 291 | nudix hydrolase; Provisional | 98.71 | |
| KOG3069 | 246 | consensus Peroxisomal NUDIX hydrolase [Replication | 98.69 | |
| KOG2839 | 145 | consensus Diadenosine and diphosphoinositol polyph | 98.61 | |
| KOG0648 | 295 | consensus Predicted NUDIX hydrolase FGF-2 and rela | 98.6 | |
| cd03431 | 118 | DNA_Glycosylase_C DNA glycosylase (MutY in bacteri | 98.4 | |
| KOG3041 | 225 | consensus Nucleoside diphosphate-sugar hydrolase o | 97.91 | |
| COG4119 | 161 | Predicted NTP pyrophosphohydrolase [DNA replicatio | 97.87 | |
| PF14815 | 114 | NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3 | 97.34 | |
| COG4112 | 203 | Predicted phosphoesterase (MutT family) [General f | 96.59 | |
| KOG4195 | 275 | consensus Transient receptor potential-related cha | 94.82 | |
| COG4227 | 316 | Antirestriction protein [DNA replication, recombin | 92.03 | |
| PF13869 | 188 | NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B | 91.48 | |
| KOG4432 | 405 | consensus Uncharacterized NUDIX family hydrolase [ | 91.26 | |
| KOG2937 | 348 | consensus Decapping enzyme complex, predicted pyro | 88.52 | |
| KOG4432 | 405 | consensus Uncharacterized NUDIX family hydrolase [ | 87.78 | |
| PRK10880 | 350 | adenine DNA glycosylase; Provisional | 87.2 |
| >PLN02791 Nudix hydrolase homolog | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-168 Score=1457.13 Aligned_cols=747 Identities=78% Similarity=1.220 Sum_probs=702.7
Q ss_pred cccccEEEEcCCCCcccccccccccccCCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHH
Q 004387 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLIS 85 (757)
Q Consensus 6 ~~~E~~~vvd~~~~~~G~~~~R~~~h~~g~~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eA 85 (757)
|++|+|+|||++++++|.+++|..+|..|.+|++|+|+|++.++++|||+||+..|.+|||+|+++||||++.|||+.+|
T Consensus 1 ~~eE~~DI~De~g~~~G~~~~R~evH~~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eA 80 (770)
T PLN02791 1 MMEEHLDVLTAAGEKTGVSKPRGEVHRDGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLS 80 (770)
T ss_pred CCceEEEEECCCCCCCCccccHHhhccCCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHH
Confidence 67899999999999999878999999999999999999999546899999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCccCCCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHh
Q 004387 86 AQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (757)
Q Consensus 86 AiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~ 165 (757)
|+||+.||+||.+....+..++.+.+......+.+++++++++|.+....+.+..+++++++||++++|++++|+.+++.
T Consensus 81 A~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~ 160 (770)
T PLN02791 81 AQRELEEELGIILPKDAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALA 160 (770)
T ss_pred HHHHHHHHhCCCCChhheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHh
Confidence 99999999999876666778887766544445557788999999987655555556789999999999999999999998
Q ss_pred cCCCCcccCCCCCchHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhccccchhccCCCHHHHHHHHHHHHHHhhhchheee
Q 004387 166 KDDPSFVPYDVNGGYGQLFNIISQRYKENTMERSLTLQKQLRRYAHVSLNAELAGLSDADKEALVLVIKAATVMDEIFYL 245 (757)
Q Consensus 166 ~~~~~f~p~~~~~~~~~~f~~l~~~~~~~~~~r~~~L~~rl~r~~pv~l~~df~~Ls~~Ek~y~~~l~~Aa~~~~~i~~~ 245 (757)
..+..|+||..++.+..+|+.+.+++..+...|..+|++++++|+||.++.|+++||++||+++.+|++||++||+|||+
T Consensus 161 ~~~~~fvP~~~~~~~~~~f~~i~~~~~~~~~~r~~~l~~~l~~~~~~~l~~d~~~l~~~~~~~l~~l~~aa~~~d~~f~~ 240 (770)
T PLN02791 161 KEDPAYVPYDVNGEYGQLFSIIEKRYKVNTEARSLTLQKQLNRYAPVNLEAELTGLSEGDRKALSYIIKAAKILDDIFYE 240 (770)
T ss_pred cCCCceeeccccchHHHHHHHHHHHHhcccHHHHHHHHHHhhCcceeEeeeccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999987788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCChhHHHHHHhccccchhhHHhHHHHHhcCCCCCCCCCCCcCccCcchhhhhcCCCCCCcCccccccccccCCCCC
Q 004387 246 QVWYSNPVLRDWLKEHADASELDKLKWMYYLINKSPWSSLDENEAFLTTADSAVKLLPDATKPVNGWKGLEYKASFPLPK 325 (757)
Q Consensus 246 Q~~~e~~~i~~~i~~~~~~~~~~~~~~~~f~~n~Gn~~~~~gd~kFip~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (757)
|+++.++.+++.|...+..++++..++.||++|+|||++++||++|+++.|++|+.|.+.++....|++++|+..++..+
T Consensus 241 q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~in~gpW~~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (770)
T PLN02791 241 QVWNSNPALRDWLKAHAEASELDKLKWAYYSINKSPWSCLDENEAFLTTADSAVKLLPGATKSVSGWKGLEYRAAFPVEK 320 (770)
T ss_pred HhccCCHHHHHhhhcccccCccchHHHHHHHHhcCcccccCCCCCCcCCcchhhhcccccccccccccccchhccccCCC
Confidence 99999999999999887777777888999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCCCCCCCCCHHHHHHHHhhccHhhhhhccCCceEEEecCCcccccCccccccccCCCccccCCceEEeecccccHHH
Q 004387 326 PPGANFYPPDMDKMEFELWKSSLTEKQQEDATSFFTVIKRRSEFNLDSSLSGHIVDATNHSVGSIYDLYSVPYSEEYNSY 405 (757)
Q Consensus 326 ~~gs~yYp~~it~~e~~~~~~~~~~~~~~~~~~~~t~i~r~~~~~l~as~~~~~~~~~~~~~~~~g~~~~~~y~g~y~~~ 405 (757)
|+|+||||+|||++||++|.+.|++.+++.+.++||+|||+++.+|.+|...+. . ...+..|+|++||||++|+++
T Consensus 321 p~ga~~YP~d~~~~ef~~~~~~~~~~~~~~~~~~~t~i~r~~~~~~~~~~~~~~---~-~~~~~~~~L~~vpys~~Y~~~ 396 (770)
T PLN02791 321 PPGANFYPPDMDKMEFELWKSGLTEKEQEDATGFFTVIKRHSELSLDASDQLDG---S-TQTDTSHDLFSVPYSEEYKPF 396 (770)
T ss_pred CCCCCcCCCCCCHHHHHHHHhhCChhhHHhhcCCeEEEEecccccccccccccc---c-cccCCCCCEEEecccHHHHHH
Confidence 999999999999999999999999989999999999999997666666643332 1 112236899999999999999
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcccCchhhhhHHHhhc----------------------CCceeEeeeeCh
Q 004387 406 LTRASELLHKAGDMASSPSLKRLLHSKADAFLSNNYYDSDIAWIEL----------------------ATFEAFIGIRDD 463 (757)
Q Consensus 406 l~~i~~~L~~A~~~a~n~~q~~~L~~~~~~f~tg~~~~s~~~Wv~d----------------------a~~E~~V~i~d~ 463 (757)
|++|+.+|++|++||+|++|++||.+||++|+|++|++||++||++ |+|||||+|+|+
T Consensus 397 l~~i~~~L~~A~~~a~n~~q~~~L~~~a~~F~t~~~~~s~~~Wvk~~~~ve~~iGfiEtY~Dpl~G~ka~fE~fV~i~d~ 476 (770)
T PLN02791 397 LKKAAELLHKAGDCADSPSLKRLLKSKAEAFLSNDYYESDIAWMELDSKLDVTIGPYETYEDGLFGYKATFEAFIGIRDD 476 (770)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccchHHHHHHHHhcCCceeEeeCCceeccCcccCcceeeEEEEEEeCH
Confidence 9999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHhCCCCcccccCCCCCCCcceehhhhhcCCCCCCceeeecCCCchhHHhccceeEEEeccchh
Q 004387 464 KATAQVKLFGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVKDRGTSMVMLKNVSE 543 (757)
Q Consensus 464 ~~s~k~~~l~~~a~~~~~~LPw~~~~ek~~~~~~~~~~~~vl~~ag~~~~~~~~giNlPN~~~ir~~~G~Knv~l~N~~~ 543 (757)
++|+||++|+++||+||++|||+++|||++|..|||+||+|+++|||+.|++||||||||||+||+++|||||||+|||+
T Consensus 477 e~t~k~~~~~~~a~~~e~~LP~~~~~~k~~~~~~~~~~i~v~~~aGd~~~~~pigiNLPN~d~Ir~~~G~K~V~L~Nv~~ 556 (770)
T PLN02791 477 KATAQLKLFGDNLQTLEDNLPLDDVYKSTNVSAAPIRVIQLLYNSGDVKGPQTVAFNLPNDERIVKERGTSMVMLKNVSE 556 (770)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhcccccCCCCCceeehhhhccccCCCCCceeECCCcHHHHhhcCceEeeecchhh
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred hccccccccccccccCHhhHHhhhcccchhhhhhhhcccCCCCCCcccCCcccccccchhhcccchHHhHHHHHHHHHHH
Q 004387 544 AKFKNILRPIADVCIRKEQQELVDFDSFFTHNICHECCHGIGPHSITLPDGRQSTVRLELQELHSAMEEAKADIVGLWAL 623 (757)
Q Consensus 544 a~~~~~~~~~~~~~i~~~~~~~~~~~af~~~v~lHElgHg~Gk~~~~~~~g~~~t~~~~~~~~~s~~EE~rAd~vglyl~ 623 (757)
|++++++.|++++|++++|++++++++||+||++|||||||||+++.+++|++.||+.+||+++|||||||||+||||++
T Consensus 557 A~~~~~~~~i~e~~i~~~~~~~~~~~af~~~v~lHElgHGsG~~~~~~~~g~~~t~~~~l~~~~s~lEE~RAD~vgLy~l 636 (770)
T PLN02791 557 AKFKHILKPIAEVCISEEQKGYVDFESFFTHTICHECCHGIGPHTITLPDGQKSTVRLELQEVHSALEEAKADIVGLWAL 636 (770)
T ss_pred hhccccccchhhhcCCHHHHHhhccccHHHHHHHHHhhccccccceecCCCCcCcHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 99998888999999999999999999999999999999999999887778777899999999999999999999999999
Q ss_pred HHHHhcCCCChhhhhHHHHHHHHHHHhhcccCccchhhhHHHHHHHHHHhcCCeEEccCCcEEEeHhhHHHHHHHHHHHH
Q 004387 624 KFLIGRDLLPKSLVKSMYVSFLAGCFRSVRFGLEESHGKGQALQFNWLFEKEAFILHSDDTFSVDFDKVEGAVESLSTEI 703 (757)
Q Consensus 624 ~~ll~~G~~~~~~~~~~y~~~l~~~~~~l~~~~~qaH~~a~~~i~~~~~e~g~~~~~~~g~~~vd~~k~~~av~~ll~~l 703 (757)
.+|+++|++++...+.+|++||+|++|+||||..|||||||++|+|||+|+|+|+.++||+|+||++||+.||++||++|
T Consensus 637 ~~l~~~g~l~~~~~~~~Y~~~l~~~~~~vR~GleqAH~~ar~~i~~~~le~G~~~~~~dg~~~vD~~Ki~~av~~ll~~l 716 (770)
T PLN02791 637 HFLIDKGLLSKSLEKSMYVSFLAGCFRSIRFGLEEAHGKGQALQFNWLYEKGAFVLHSDGTFSVDFAKVEDAVESLSREI 716 (770)
T ss_pred HHhhhcCCCCcHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHcCCEEEcCCceEEEcHHHHHHHHHHHHHHH
Confidence 99999999988888999999999999999999999999999999999999999887778999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCHHHHHHHHHhhcCCCCcccccchhhHhhhh
Q 004387 704 LTIQARGDKEAASLLLQKYCTMTQPLKVALQKLENVQVPVDIAPTFTAVNKLL 756 (757)
Q Consensus 704 ~~~k~~gD~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~p~di~~~~~~~~~~~ 756 (757)
|+|||+||+++|++||++|++|+|+++.+|+++++++|||||+|+|+++++++
T Consensus 717 ~~iks~GD~~aa~~l~e~y~~v~~~~~~~l~~~~~~~~pvdi~~~~~~~~~~~ 769 (770)
T PLN02791 717 LTIQAKGDKAAAISLLQKYATLTPPLRVALEKLEDVQVPVDIVPTFPTAEKLL 769 (770)
T ss_pred HeeecccCHHHHHHHHHHhccCCHHHHHHHHHhhhCCCCCCccccccchhhhc
Confidence 99999999999999999999999999999999999999999999999999886
|
|
| >PF03571 Peptidase_M49: Peptidase family M49; InterPro: IPR005317 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG3675 consensus Dipeptidyl peptidase III [General function prediction only] | Back alignment and domain information |
|---|
| >cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway | Back alignment and domain information |
|---|
| >PLN02552 isopentenyl-diphosphate delta-isomerase | Back alignment and domain information |
|---|
| >cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional | Back alignment and domain information |
|---|
| >TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1 | Back alignment and domain information |
|---|
| >COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism] | Back alignment and domain information |
|---|
| >PRK15393 NUDIX hydrolase YfcD; Provisional | Back alignment and domain information |
|---|
| >cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PLN02839 nudix hydrolase | Back alignment and domain information |
|---|
| >KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
| >cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional | Back alignment and domain information |
|---|
| >cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily | Back alignment and domain information |
|---|
| >PRK15472 nucleoside triphosphatase NudI; Provisional | Back alignment and domain information |
|---|
| >cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family [] | Back alignment and domain information |
|---|
| >cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function | Back alignment and domain information |
|---|
| >cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes | Back alignment and domain information |
|---|
| >cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities | Back alignment and domain information |
|---|
| >cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily | Back alignment and domain information |
|---|
| >cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate | Back alignment and domain information |
|---|
| >cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional | Back alignment and domain information |
|---|
| >cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily | Back alignment and domain information |
|---|
| >cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PLN02325 nudix hydrolase | Back alignment and domain information |
|---|
| >cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily | Back alignment and domain information |
|---|
| >cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP | Back alignment and domain information |
|---|
| >PRK00714 RNA pyrophosphohydrolase; Reviewed | Back alignment and domain information |
|---|
| >cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function | Back alignment and domain information |
|---|
| >cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily | Back alignment and domain information |
|---|
| >cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
| >cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex | Back alignment and domain information |
|---|
| >cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
| >cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi) | Back alignment and domain information |
|---|
| >PRK00241 nudC NADH pyrophosphatase; Reviewed | Back alignment and domain information |
|---|
| >cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional | Back alignment and domain information |
|---|
| >cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily | Back alignment and domain information |
|---|
| >TIGR00586 mutt mutator mutT protein | Back alignment and domain information |
|---|
| >PRK10707 putative NUDIX hydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional | Back alignment and domain information |
|---|
| >TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family | Back alignment and domain information |
|---|
| >cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PLN02709 nudix hydrolase | Back alignment and domain information |
|---|
| >TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD | Back alignment and domain information |
|---|
| >PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional | Back alignment and domain information |
|---|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PRK15009 GDP-mannose pyrophosphatase NudK; Provisional | Back alignment and domain information |
|---|
| >COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P | Back alignment and domain information |
|---|
| >COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only] | Back alignment and domain information |
|---|
| >cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PLN03143 nudix hydrolase; Provisional | Back alignment and domain information |
|---|
| >KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone | Back alignment and domain information |
|---|
| >KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only] | Back alignment and domain information |
|---|
| >PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A | Back alignment and domain information |
|---|
| >COG4112 Predicted phosphoesterase (MutT family) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG4227 Antirestriction protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A | Back alignment and domain information |
|---|
| >KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10880 adenine DNA glycosylase; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 757 | ||||
| 1q54_A | 183 | Structure And Mechanism Of Action Of Isopentenylpyr | 6e-08 | ||
| 1hx3_A | 190 | Crystal Structure Of E.Coli Isopentenyl Diphosphate | 6e-08 | ||
| 1r67_A | 190 | Y104a Mutant Of E.coli Ipp Isomerase Length = 190 | 1e-07 | ||
| 1hzt_A | 190 | Crystal Structure Of Metal-Free Isopentenyl Diphosp | 1e-07 | ||
| 1x84_A | 189 | Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of | 2e-07 | ||
| 1nfs_A | 183 | Structure And Mechanism Of Action Of Isopentenylpyr | 2e-07 | ||
| 1x83_A | 189 | Y104f Ipp Isomerase Reacted With (S)-Bromohydrine O | 2e-07 | ||
| 2g73_A | 183 | Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp | 2e-07 | ||
| 1i9a_A | 182 | Structural Studies Of Cholesterol Biosynthesis: Mev | 2e-07 | ||
| 3hyq_A | 184 | Crystal Structure Of Isopentenyl-Diphosphate Delta- | 9e-06 | ||
| 2icj_A | 233 | The Crystal Structure Of Human Isopentenyl Diphopha | 7e-04 | ||
| 2dho_A | 235 | Crystal Structure Of Human Ipp Isomerase I In Space | 7e-04 | ||
| 2i6k_A | 235 | Crystal Structure Of Human Type I Ipp Isomerase Com | 8e-04 |
| >pdb|1Q54|A Chain A, Structure And Mechanism Of Action Of Isopentenylpyrophosphate-Dimethylallylpyrophosphate Isomerase: Complex With The Bromohydrine Of Ipp Length = 183 | Back alignment and structure |
|
| >pdb|1HX3|A Chain A, Crystal Structure Of E.Coli Isopentenyl Diphosphate:dimethylallyl Diphosphate Isomerase Length = 190 | Back alignment and structure |
| >pdb|1R67|A Chain A, Y104a Mutant Of E.coli Ipp Isomerase Length = 190 | Back alignment and structure |
| >pdb|1HZT|A Chain A, Crystal Structure Of Metal-Free Isopentenyl Diphosphate:dimethylallyl Diphosphate Isomerase Length = 190 | Back alignment and structure |
| >pdb|1X84|A Chain A, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp Length = 189 | Back alignment and structure |
| >pdb|1NFS|A Chain A, Structure And Mechanism Of Action Of Isopentenylpyrophosphate-dimethylallylpyrophosphate Isomerase: Complex With Nipp Length = 183 | Back alignment and structure |
| >pdb|1X83|A Chain A, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp Length = 189 | Back alignment and structure |
| >pdb|2G73|A Chain A, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp Length = 183 | Back alignment and structure |
| >pdb|1I9A|A Chain A, Structural Studies Of Cholesterol Biosynthesis: Mevalonate 5-Diphosphate Decarboxylase And Isopentenyl Diphosphate Isomerase Length = 182 | Back alignment and structure |
| >pdb|3HYQ|A Chain A, Crystal Structure Of Isopentenyl-Diphosphate Delta-Isomerase From Salmonella Entericase Length = 184 | Back alignment and structure |
| >pdb|2ICJ|A Chain A, The Crystal Structure Of Human Isopentenyl Diphophate Isomerase Length = 233 | Back alignment and structure |
| >pdb|2DHO|A Chain A, Crystal Structure Of Human Ipp Isomerase I In Space Group P212121 Length = 235 | Back alignment and structure |
| >pdb|2I6K|A Chain A, Crystal Structure Of Human Type I Ipp Isomerase Complexed With A Substrate Analog Length = 235 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3fvy_A Dipeptidyl-peptidase 3; SGC, DPP3, alternative splicing, aminopeptidase, cytoplasm, hydrolase, metal-binding, metalloprotease, phosphoprotein; 1.90A {Homo sapiens} PDB: 3t6b_A 3t6j_A Length = 728 | Back alignment and structure |
|---|
Score = 220 bits (560), Expect = 1e-61
Identities = 92/645 (14%), Positives = 189/645 (29%), Gaps = 131/645 (20%)
Query: 219 AGLSDADKEALVLVIKAATVMDEIFYLQVWYSNPVLR------------DWLKEHADASE 266
LS ++ + +AA LQ P + D L +HA A
Sbjct: 26 RLLSPTERLYAYHLSRAAWYGGLAVLLQTSPEAPYIYALLSRLFRAQDPDQLHQHALAEG 85
Query: 267 LDKLKWMYYLI-------NKSPWSSLDEN--------EAFLTTADSAVKLLPDATKPVNG 311
L + ++ +L+ N + S + E + +
Sbjct: 86 LTEEEYQAFLVYAAGVYSNMGNYKSFGDTKFVPNLPKEKLERVILGSEAAQQHPEEVRGL 145
Query: 312 WKGLE--YKASFPLPKPPG------ANFYPPD------------MDKMEFELWKSSLTEK 351
W+ + P + G ++ + +D + + L ++
Sbjct: 146 WQTCGELMFSLEPRLRHLGLGKEGITTYFSGNCTMEDAKLAQDFLDSQNLSAYNTRLFKE 205
Query: 352 QQEDATSFFTVIKRRSEFNLDSSLSGHIVDATNHSV-GSIYDLYSVPYSEEYNSYLTRAS 410
+ ++ V + S S ++ GS + + Y+ L +
Sbjct: 206 VDGEGKPYYEVRLASVLGSEPSLDSEVTSKLKSYEFRGSPFQVTRGDYAPI----LQKVV 261
Query: 411 ELLHKAGDMASSPSLKRLLHSKADAFLS---NNYYDSDIAWIEL---------------- 451
E L KA A++ ++L ++F + WI+
Sbjct: 262 EQLEKAKAYAANSHQGQMLAQYIESFTQGSIEAHKRGSRFWIQDKGPIVESYIGFIESYR 321
Query: 452 ------ATFEAFIGIRDDKATAQVKLFGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLI 505
FE F+ + + +A+ + + + L + LP ++ + + ++
Sbjct: 322 DPFGSRGEFEGFVAVVNKAMSAKFERLVASAEQLLKELPWPPTFEKDKFLTPDFTSLDVL 381
Query: 506 YNSGDVKGPQTVAFNLPNDERIVKDRGTSMVMLKNVSEAKFKNILRPIADVCIR-KEQQE 564
+G N+PN + + + G V L NV + + + K+
Sbjct: 382 TFAGSG---IPAGINIPNYDDLRQTEGFKNVSLGNVLAVAYATQREKLTFLEEDDKDLYI 438
Query: 565 LVDFDSFFTHNICHECC-HGIGPHSITLPDGRQ-----------------------STVR 600
L SF HE HG G + G T
Sbjct: 439 LWKGPSFDVQVGLHELLGHGSGKLFVQDEKGAFNFDQETVINPETGEQIQSWYRSGETWD 498
Query: 601 LELQELHSAMEEAKADIVGLWAL---KFLIGRDLLPKSLVKSMYVSFLAGCFRSVR---- 653
+ + S+ EE +A+ VGL+ + L +YV++L +
Sbjct: 499 SKFSTIASSYEECRAESVGLYLCLHPQVLEIFGFEGADAEDVIYVNWLNMVRAGLLALEF 558
Query: 654 -----FGLEESHGKGQALQFNWLFEKEAFIL----------HSDDTFSVDFDKVEG---- 694
F ++H + + + L E ++ D +D K+
Sbjct: 559 YTPEAFNWRQAHMQARFVILRVLLEAGEGLVTITPTTGSDGRPDARVRLDRSKIRSVGKP 618
Query: 695 AVESLSTEILTIQARGDKEAASLLLQKYCTMTQPLKVALQKLENV 739
A+E + +++ GD L + Y T+T L +
Sbjct: 619 ALERFLRRLQVLKSTGDVAGGRALYEGYATVTDAPPECFLTLRDT 663
|
| >3csk_A Probable dipeptidyl-peptidase 3; Zn-hydrolase, aminodipeptidase, hexxgh-motif, aminopeptidase hydrolase, metal-binding, metalloprotease; 1.95A {Saccharomyces cerevisiae} Length = 711 | Back alignment and structure |
|---|
| >1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171 | Back alignment and structure |
|---|
| >2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180 | Back alignment and structure |
|---|
| >1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190 | Back alignment and structure |
|---|
| >3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300 | Back alignment and structure |
|---|
| >2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A* Length = 235 | Back alignment and structure |
|---|
| >2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens} Length = 246 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197 | Back alignment and structure |
|---|
| >3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149 | Back alignment and structure |
|---|
| >3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165 | Back alignment and structure |
|---|
| >2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146 | Back alignment and structure |
|---|
| >3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
| >2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148 | Back alignment and structure |
|---|
| >2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271 | Back alignment and structure |
|---|
| >2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155 | Back alignment and structure |
|---|
| >3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153 | Back alignment and structure |
|---|
| >1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160 | Back alignment and structure |
|---|
| >3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188 | Back alignment and structure |
|---|
| >1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159 | Back alignment and structure |
|---|
| >3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159 | Back alignment and structure |
|---|
| >3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161 | Back alignment and structure |
|---|
| >3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153 | Back alignment and structure |
|---|
| >2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153 | Back alignment and structure |
|---|
| >4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157 | Back alignment and structure |
|---|
| >2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150 | Back alignment and structure |
|---|
| >1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153 | Back alignment and structure |
|---|
| >3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176 | Back alignment and structure |
|---|
| >1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156 | Back alignment and structure |
|---|
| >2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273 | Back alignment and structure |
|---|
| >3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189 | Back alignment and structure |
|---|
| >2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145 | Back alignment and structure |
|---|
| >1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 757 | |||
| 3fvy_A | 728 | Dipeptidyl-peptidase 3; SGC, DPP3, alternative spl | 100.0 | |
| 3csk_A | 711 | Probable dipeptidyl-peptidase 3; Zn-hydrolase, ami | 100.0 | |
| 3dup_A | 300 | MUTT/nudix family protein; nudix superfamily hydro | 99.94 | |
| 2pny_A | 246 | Isopentenyl-diphosphate delta-isomerase 2; caroten | 99.92 | |
| 2dho_A | 235 | Isopentenyl-diphosphate delta-isomerase 1; alpha/b | 99.92 | |
| 1hzt_A | 190 | Isopentenyl diphosphate delta-isomerase; dimethyla | 99.9 | |
| 2fkb_A | 180 | Putative nudix hydrolase YFCD; putative protein, M | 99.86 | |
| 1q27_A | 171 | Putative nudix hydrolase DR0079; radiation resista | 99.84 | |
| 3i7u_A | 134 | AP4A hydrolase; nudix protein, diadenosine polypho | 99.68 | |
| 1sjy_A | 159 | MUTT/nudix family protein; nudix fold, alpha-beta- | 99.67 | |
| 3grn_A | 153 | MUTT related protein; structural genomics, hydrola | 99.66 | |
| 3eds_A | 153 | MUTT/nudix family protein; MUT/nudix protein, prot | 99.62 | |
| 3oga_A | 165 | Nucleoside triphosphatase NUDI; salmonella enteric | 99.62 | |
| 3r03_A | 144 | Nudix hydrolase; structural genomics, PSI2, protei | 99.61 | |
| 3u53_A | 155 | BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; | 99.61 | |
| 1rya_A | 160 | GDP-mannose mannosyl hydrolase; GDP-glucose, nudix | 99.6 | |
| 1ktg_A | 138 | Diadenosine tetraphosphate hydrolase; nudix, AMP, | 99.59 | |
| 3shd_A | 153 | Phosphatase NUDJ; nudix fold, nudix motif, hydrola | 99.58 | |
| 3gwy_A | 140 | Putative CTP pyrophosphohydrolase; structural geno | 99.58 | |
| 2pbt_A | 134 | AP4A hydrolase; nudix protein, diadenosine polypho | 99.58 | |
| 3hhj_A | 158 | Mutator MUTT protein; niaid, ssgcid, decode, UW, S | 99.58 | |
| 2o1c_A | 150 | DATP pyrophosphohydrolase; nudix NTP hydrolase NTP | 99.57 | |
| 4dyw_A | 157 | MUTT/nudix family protein; structural genomics, ni | 99.57 | |
| 3fcm_A | 197 | Hydrolase, nudix family; protein structure initiat | 99.56 | |
| 3exq_A | 161 | Nudix family hydrolase; protein structure initiati | 99.56 | |
| 3e57_A | 211 | Uncharacterized protein TM1382; structural genomic | 99.56 | |
| 3ees_A | 153 | Probable pyrophosphohydrolase; nudix, RNA pyrophos | 99.56 | |
| 3gg6_A | 156 | Nudix motif 18, nucleoside diphosphate-linked moie | 99.55 | |
| 2b0v_A | 153 | Nudix hydrolase; structural genomics, PSI, protein | 99.54 | |
| 3f6a_A | 159 | Hydrolase, nudix family; protein structure initiat | 99.54 | |
| 2rrk_A | 140 | ORF135, CTP pyrophosphohydrolase; NMR {Escherichia | 99.53 | |
| 3son_A | 149 | Hypothetical nudix hydrolase; structural genomics, | 99.53 | |
| 2azw_A | 148 | MUTT/nudix family protein; MUTT/nudix ,enterococcu | 99.53 | |
| 1vcd_A | 126 | NDX1; nudix protein, diadenosine polyphosphate, AP | 99.53 | |
| 1v8y_A | 170 | ADP-ribose pyrophosphatase; nudix motif, loop-heli | 99.53 | |
| 1nqz_A | 194 | COA pyrophosphatase (MUTT/nudix family protein); D | 99.52 | |
| 1f3y_A | 165 | Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase | 99.52 | |
| 3i9x_A | 187 | MUTT/nudix family protein; structural genomics, hy | 99.51 | |
| 2b06_A | 155 | MUTT/nudix family protein; structural genomics, P | 99.51 | |
| 3q93_A | 176 | 7,8-dihydro-8-oxoguanine triphosphatase; structura | 99.51 | |
| 3id9_A | 171 | MUTT/nudix family protein; hydrolase, protein stru | 99.5 | |
| 2pqv_A | 154 | MUTT/nudix family protein; structu genomics, PSI-2 | 99.5 | |
| 3cng_A | 189 | Nudix hydrolase; structural genomics, APC7497, PSI | 99.5 | |
| 2w4e_A | 145 | MUTT/nudix family protein; ADP-ribose pyrophosphat | 99.49 | |
| 3q91_A | 218 | Uridine diphosphate glucose pyrophosphatase; struc | 99.49 | |
| 2kdv_A | 164 | RNA pyrophosphohydrolase; nudix family, magnesium, | 99.49 | |
| 2yvp_A | 182 | NDX2, MUTT/nudix family protein; nudix protein, AD | 99.49 | |
| 2fb1_A | 226 | Conserved hypothetical protein; structural genomic | 99.48 | |
| 2jvb_A | 146 | Protein PSU1, mRNA-decapping enzyme subunit 2; DCP | 99.46 | |
| 3h95_A | 199 | Nucleoside diphosphate-linked moiety X motif 6; NU | 99.46 | |
| 1vk6_A | 269 | NADH pyrophosphatase; 1790429, structural genomics | 99.46 | |
| 2yyh_A | 139 | MUTT domain, 8-OXO-DGTPase domain; nudix family pr | 99.46 | |
| 3gz5_A | 240 | MUTT/nudix family protein; DNA binding protein, nu | 99.46 | |
| 3o6z_A | 191 | GDP-mannose pyrophosphatase NUDK; nudix, hydrolase | 99.45 | |
| 1mk1_A | 207 | ADPR pyrophosphatase; nudix hydrolase, adprase, ad | 99.45 | |
| 2fvv_A | 194 | Diphosphoinositol polyphosphate phosphohydrolase 1 | 99.45 | |
| 2fml_A | 273 | MUTT/nudix family protein; structural genomics, PS | 99.44 | |
| 1vhz_A | 198 | ADP compounds hydrolase NUDE; structural genomics; | 99.44 | |
| 3fk9_A | 188 | Mutator MUTT protein; structural genomics, hydrola | 99.44 | |
| 1g0s_A | 209 | Hypothetical 23.7 kDa protein in ICC-TOLC intergen | 99.43 | |
| 3q1p_A | 205 | Phosphohydrolase (MUTT/nudix family protein); asym | 99.43 | |
| 1mut_A | 129 | MUTT, nucleoside triphosphate pyrophosphohydrolase | 99.43 | |
| 2qjt_B | 352 | Nicotinamide-nucleotide adenylyltransferase; two i | 99.41 | |
| 3o8s_A | 206 | Nudix hydrolase, ADP-ribose pyrophosphatase; struc | 99.41 | |
| 2qjo_A | 341 | Bifunctional NMN adenylyltransferase/nudix hydrol; | 99.38 | |
| 3f13_A | 163 | Putative nudix hydrolase family member; structural | 99.37 | |
| 1k2e_A | 156 | Nudix homolog; nudix/MUTT-like fold, mixed alpha/b | 99.35 | |
| 1x51_A | 155 | A/G-specific adenine DNA glycosylase; nudix domain | 99.33 | |
| 2a6t_A | 271 | SPAC19A8.12; alpha/beta/alpha, RNA binding protein | 99.31 | |
| 2dsc_A | 212 | ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP | 99.31 | |
| 1u20_A | 212 | U8 snoRNA-binding protein X29; modified nudix hydr | 99.27 | |
| 3fjy_A | 364 | Probable MUTT1 protein; dimer, protein structure i | 99.2 | |
| 3qsj_A | 232 | Nudix hydrolase; structural genomics, PSI-biology, | 99.18 | |
| 3fsp_A | 369 | A/G-specific adenine glycosylase; protein-DNA comp | 99.12 | |
| 1q33_A | 292 | Pyrophosphatase, ADP-ribose pyrophosphatase; nudix | 99.02 | |
| 2xsq_A | 217 | U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp | 98.86 | |
| 3kvh_A | 214 | Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R | 98.48 | |
| 3rh7_A | 321 | Hypothetical oxidoreductase; FMN-binding split bar | 98.39 | |
| 3bho_A | 208 | Cleavage and polyadenylation specificity factor su | 98.26 |
| >3fvy_A Dipeptidyl-peptidase 3; SGC, DPP3, alternative splicing, aminopeptidase, cytoplasm, hydrolase, metal-binding, metalloprotease, phosphoprotein; 1.90A {Homo sapiens} PDB: 3t6b_A 3t6j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-123 Score=1064.58 Aligned_cols=517 Identities=17% Similarity=0.220 Sum_probs=440.2
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHhhhchheeeeccCCChhHHHHHHhccccc------h------hhHHh----HH-
Q 004387 211 HVSLNAELAGLSDADKEALVLVIKAATVMDEIFYLQVWYSNPVLRDWLKEHADAS------E------LDKLK----WM- 273 (757)
Q Consensus 211 pv~l~~df~~Ls~~Ek~y~~~l~~Aa~~~~~i~~~Q~~~e~~~i~~~i~~~~~~~------~------~~~~~----~~- 273 (757)
...++..|+.||++||+|||||++|||.|.||+++|+||||+.||++|..+.... . .++.+ ++
T Consensus 18 ~L~~~~~F~~Lt~keK~Yah~ls~Aa~~G~~I~l~Q~s~es~~I~~ll~~i~~~~~~~~~~~~~~~~~~~~~e~~~fl~Y 97 (728)
T 3fvy_A 18 SLDCREAFRLLSPTERLYAYHLSRAAWYGGLAVLLQTSPEAPYIYALLSRLFRAQDPDQLHQHALAEGLTEEEYQAFLVY 97 (728)
T ss_dssp ECCCHHHHHTSCHHHHHHHHHHHHHHHHHHTHHHHTTCSSHHHHHHHHHHHHHHSCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EEehHHhHhhCCHHHHHHHHHHHHHHHcCCCEEEEeCCcccHHHHHHHHHHHHhCCchhHHHHHHhcCCCHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999999999999884211 1 11222 23
Q ss_pred --HHHhcCCCCCCCCCCCcCccCcc-hhhhhcCCCC--------CCcCcccccc---ccc----cCCCCCCCC-CCCCCC
Q 004387 274 --YYLINKSPWSSLDENEAFLTTAD-SAVKLLPDAT--------KPVNGWKGLE---YKA----SFPLPKPPG-ANFYPP 334 (757)
Q Consensus 274 --~f~~n~Gn~~~~~gd~kFip~~~-~~~~~l~~~~--------~~~~~~~~~~---~~~----~~~~~~~~g-s~yYp~ 334 (757)
.|+.|+|||++| ||+||||+|+ +.|++|++.. ...++|+.|. |+. ...+.+++| |||||+
T Consensus 98 ~~~f~~n~Gny~~f-Gd~KfiP~~s~~~f~~l~~~s~~~~~~~~~~~~l~~~~~~~if~~~~~~~~lg~~~~g~s~YY~~ 176 (728)
T 3fvy_A 98 AAGVYSNMGNYKSF-GDTKFVPNLPKEKLERVILGSEAAQQHPEEVRGLWQTCGELMFSLEPRLRHLGLGKEGITTYFSG 176 (728)
T ss_dssp HHHHHHHTSSBCTT-TCBBCCCSSCHHHHHHHHHHSHHHHHSHHHHHHHHHHHHHHHHCCCGGGSBBCSGGGCBCSSBCT
T ss_pred HHHHHhccCCccCC-CCCCcCCCCCHHHHHHHHHhCchhhccchhHHHHHHHhhHHhccCCcccccCCCCCCCccCCCCC
Confidence 379999999997 9999999999 6899998532 2356788876 321 223445677 999988
Q ss_pred CCCHHHHHHHHhhccHhhhhhccCCceEEEecC--Cc-----ccccCcccccccc--C----CCccccCCceEEeecccc
Q 004387 335 DMDKMEFELWKSSLTEKQQEDATSFFTVIKRRS--EF-----NLDSSLSGHIVDA--T----NHSVGSIYDLYSVPYSEE 401 (757)
Q Consensus 335 ~it~~e~~~~~~~~~~~~~~~~~~~~t~i~r~~--~~-----~l~as~~~~~~~~--~----~~~~~~~g~~~~~~y~g~ 401 (757)
+||++|+++++++| +.+++.++||||+|.. ++ .|+||+++..... . ......+|+.+.+.| ||
T Consensus 177 ~iT~~eie~v~~~~---~~~~i~~~NTRl~K~~~~~g~~~~~i~~AS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gd 252 (728)
T 3fvy_A 177 NCTMEDAKLAQDFL---DSQNLSAYNTRLFKEVDGEGKPYYEVRLASVLGSEPSLDSEVTSKLKSYEFRGSPFQVTR-GD 252 (728)
T ss_dssp TCCHHHHHHHHHHH---HHTTCCSTTEEEEEEECTTCCEEEEEEEECSSCCC----CTTGGGCSEEEETTEEEEEEE-EE
T ss_pred CCCHHHHHHHHHHH---HhCCCchhcceEEEEecCCCcceEEEEEEeecccCCccccccccccccccccCceeeecC-Cc
Confidence 99999999999998 4677899999999972 32 2899987542111 0 011123578899986 99
Q ss_pred cHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcccCch---hhhhHHHhhc----------------------CCcee
Q 004387 402 YNSYLTRASELLHKAGDMASSPSLKRLLHSKADAFLSNNY---YDSDIAWIEL----------------------ATFEA 456 (757)
Q Consensus 402 y~~~l~~i~~~L~~A~~~a~n~~q~~~L~~~~~~f~tg~~---~~s~~~Wv~d----------------------a~~E~ 456 (757)
|+++|++||.+|++|++||+|++|++||.+||++|+||++ ++||++||+| |||||
T Consensus 253 y~~~l~ki~~~L~kA~~~A~N~~qk~~L~~yi~~F~TGdl~~~k~s~~~WvkD~~p~VE~~iGFIEtYrDP~G~Rae~Eg 332 (728)
T 3fvy_A 253 YAPILQKVVEQLEKAKAYAANSHQGQMLAQYIESFTQGSIEAHKRGSRFWIQDKGPIVESYIGFIESYRDPFGSRGEFEG 332 (728)
T ss_dssp THHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSCSCSEEEEEEEEECSSSTTSCSCEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCceeeeecCceecCCCCCCceeEEE
Confidence 9999999999999999999999999999999999999966 7899999998 99999
Q ss_pred EeeeeChHHHHHHHHHhhhHHHHHHhCCCCcccccCCCCCCCcceehhhhhcCCCCCCceeeecCCCchhHHhccceeEE
Q 004387 457 FIGIRDDKATAQVKLFGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVKDRGTSMV 536 (757)
Q Consensus 457 ~V~i~d~~~s~k~~~l~~~a~~~~~~LPw~~~~ek~~~~~~~~~~~~vl~~ag~~~~~~~~giNlPN~~~ir~~~G~Knv 536 (757)
||+|+|+++|+||++|+++||+||++|||+++|||++|.+||||||+||+||||+ +|||||||||||||+++|||||
T Consensus 333 fVai~d~e~T~kl~~lv~~a~~~~~~LPw~~~feKd~f~~pdftsl~vl~~aGsg---~p~GINLPNyd~IR~~~GfKnV 409 (728)
T 3fvy_A 333 FVAVVNKAMSAKFERLVASAEQLLKELPWPPTFEKDKFLTPDFTSLDVLTFAGSG---IPAGINIPNYDDLRQTEGFKNV 409 (728)
T ss_dssp EEEECCHHHHHHHHHHHHTHHHHHHTSSSCGGGSCSSCCCCCCCEEEEEEEESSC---CCSEEEECCCHHHHHHTCCEEE
T ss_pred EEEEeCHHHHHHHHHHHHHHHHHHHhCCCCchhccCccCCCCceEEEeHhhcCCC---CccceeCCChHHHHHhcCeeEE
Confidence 9999999999999999999999999999999999999999999999999999995 6999999999999999999999
Q ss_pred EeccchhhccccccccccccccCHhhHHhhhcc---cchhhhhhhhc-ccCCCCCCcccC----------------C---
Q 004387 537 MLKNVSEAKFKNILRPIADVCIRKEQQELVDFD---SFFTHNICHEC-CHGIGPHSITLP----------------D--- 593 (757)
Q Consensus 537 ~l~N~~~a~~~~~~~~~~~~~i~~~~~~~~~~~---af~~~v~lHEl-gHg~Gk~~~~~~----------------~--- 593 (757)
+|+|||+|++.....+ ..||+++|++++.++ +|++||+|||| ||||||++...+ |
T Consensus 410 sLgNvl~A~~~~~~~~--i~fi~~~~~~l~~k~~~~af~~~v~lHElLGHGsGkll~~~~~G~~NFD~~~~~~p~tg~~i 487 (728)
T 3fvy_A 410 SLGNVLAVAYATQREK--LTFLEEDDKDLYILWKGPSFDVQVGLHELLGHGSGKLFVQDEKGAFNFDQETVINPETGEQI 487 (728)
T ss_dssp EEHHHHTTSSCCSGGG--CTTBCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCBBCTTSCBSSCTTTCBCTTTSSBC
T ss_pred EeeeehhhhhcccccC--CCccCHHHHHHHHHhccchHhHHHHHHHhccCcCCcccccCCCCccccccccCCCCCCCCcc
Confidence 9999999987432223 259999999998765 89999999999 999999654221 1
Q ss_pred ----cccccccchhhcccchHHhHHHHHHHHHHH--HHHHhc-CCCChhhhhHHHHHHHHH---HHhhccc------Ccc
Q 004387 594 ----GRQSTVRLELQELHSAMEEAKADIVGLWAL--KFLIGR-DLLPKSLVKSMYVSFLAG---CFRSVRF------GLE 657 (757)
Q Consensus 594 ----g~~~t~~~~~~~~~s~~EE~rAd~vglyl~--~~ll~~-G~~~~~~~~~~y~~~l~~---~~~~l~~------~~~ 657 (757)
.+|+||+++||+++||+||||||+|||||| ++|+++ |+.+.++.+++|++||+| |+++++| +|+
T Consensus 488 ~swY~pgeT~~s~fg~~ast~EEcRAdlvgLYl~~~~~lleifG~~~~~a~d~~Y~~~L~~~~~Gl~~l~f~~p~~~~w~ 567 (728)
T 3fvy_A 488 QSWYRSGETWDSKFSTIASSYEECRAESVGLYLCLHPQVLEIFGFEGADAEDVIYVNWLNMVRAGLLALEFYTPEAFNWR 567 (728)
T ss_dssp CCCBCTTCCHHHHSTTTHHHHHHHHHHHHHHHHTTCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHGGGGEEGGGTEES
T ss_pred eeeccCCCcHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHcCCCccchhhhHHHHHHHHHHHhhheeeeecCCCCcch
Confidence 158999999999999999999999999999 679999 998767889999999976 6789998 299
Q ss_pred chhhhHHHHHHHHHHhcCC-eE---Ec--cC----CcEEEeHhhHH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 004387 658 ESHGKGQALQFNWLFEKEA-FI---LH--SD----DTFSVDFDKVE----GAVESLSTEILTIQARGDKEAASLLLQKYC 723 (757)
Q Consensus 658 qaH~~a~~~i~~~~~e~g~-~~---~~--~~----g~~~vd~~k~~----~av~~ll~~l~~~k~~gD~~~~~~~~~~~~ 723 (757)
||||||||+|+|||+|+|. |+ .+ ++ ++++||++||+ +||++||++||+||||||+++|++||++|+
T Consensus 568 qAH~qar~~il~~lle~G~~~v~~~~~~~~~g~~~~~i~vD~sKi~~~g~~avg~lL~~l~~~KstgD~~aa~~l~e~y~ 647 (728)
T 3fvy_A 568 QAHMQARFVILRVLLEAGEGLVTITPTTGSDGRPDARVRLDRSKIRSVGKPALERFLRRLQVLKSTGDVAGGRALYEGYA 647 (728)
T ss_dssp CHHHHHHHHHHHHHHHTCTTSEEEEEEECTTSSEEEEEEECGGGTTTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHcCCCeEEEEEecccCCCCcEEEEeeHHHHhhhhHHHHHHHHHHHHeeeecCCHHHHHHHHHhcc
Confidence 9999999999999999996 43 22 13 45789999995 699999999999999999999999999999
Q ss_pred CCCHH-------HHH-HHHHhh
Q 004387 724 TMTQP-------LKV-ALQKLE 737 (757)
Q Consensus 724 ~v~~~-------~~~-~l~~~~ 737 (757)
+|+++ +++ ||+|.+
T Consensus 648 ~v~~~~~~~~~~~r~iVl~rk~ 669 (728)
T 3fvy_A 648 TVTDAPPECFLTLRDTVLLRKE 669 (728)
T ss_dssp CCCCCTTTCHHHHHHHHHHTCC
T ss_pred ccCcccchhHHHHHHHHHhccC
Confidence 99876 555 776654
|
| >3csk_A Probable dipeptidyl-peptidase 3; Zn-hydrolase, aminodipeptidase, hexxgh-motif, aminopeptidase hydrolase, metal-binding, metalloprotease; 1.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} | Back alignment and structure |
|---|
| >2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens} | Back alignment and structure |
|---|
| >2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A* | Back alignment and structure |
|---|
| >1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* | Back alignment and structure |
|---|
| >2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 | Back alignment and structure |
|---|
| >1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A | Back alignment and structure |
|---|
| >3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A* | Back alignment and structure |
|---|
| >1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* | Back alignment and structure |
|---|
| >3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A | Back alignment and structure |
|---|
| >3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0 | Back alignment and structure |
|---|
| >3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A* | Back alignment and structure |
|---|
| >1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* | Back alignment and structure |
|---|
| >1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* | Back alignment and structure |
|---|
| >3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A | Back alignment and structure |
|---|
| >3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0 | Back alignment and structure |
|---|
| >3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
| >2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A | Back alignment and structure |
|---|
| >4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
| >3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} | Back alignment and structure |
|---|
| >3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* | Back alignment and structure |
|---|
| >3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 | Back alignment and structure |
|---|
| >3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
| >2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 | Back alignment and structure |
|---|
| >1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* | Back alignment and structure |
|---|
| >1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A | Back alignment and structure |
|---|
| >1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A | Back alignment and structure |
|---|
| >1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* | Back alignment and structure |
|---|
| >3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} | Back alignment and structure |
|---|
| >2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 | Back alignment and structure |
|---|
| >3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A | Back alignment and structure |
|---|
| >3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} | Back alignment and structure |
|---|
| >2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} | Back alignment and structure |
|---|
| >2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A | Back alignment and structure |
|---|
| >2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* | Back alignment and structure |
|---|
| >2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 | Back alignment and structure |
|---|
| >2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A | Back alignment and structure |
|---|
| >2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* | Back alignment and structure |
|---|
| >3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A | Back alignment and structure |
|---|
| >1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* | Back alignment and structure |
|---|
| >2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* | Back alignment and structure |
|---|
| >2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 | Back alignment and structure |
|---|
| >1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* | Back alignment and structure |
|---|
| >3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} | Back alignment and structure |
|---|
| >1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A | Back alignment and structure |
|---|
| >3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A | Back alignment and structure |
|---|
| >1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* | Back alignment and structure |
|---|
| >2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B | Back alignment and structure |
|---|
| >3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} | Back alignment and structure |
|---|
| >2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} | Back alignment and structure |
|---|
| >3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} | Back alignment and structure |
|---|
| >1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A | Back alignment and structure |
|---|
| >1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3 | Back alignment and structure |
|---|
| >2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* | Back alignment and structure |
|---|
| >2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* | Back alignment and structure |
|---|
| >1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A* | Back alignment and structure |
|---|
| >3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} | Back alignment and structure |
|---|
| >3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* | Back alignment and structure |
|---|
| >1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* | Back alignment and structure |
|---|
| >2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A | Back alignment and structure |
|---|
| >3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 757 | ||||
| d2fkba1 | 161 | d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc | 1e-19 | |
| d2o5fa1 | 162 | d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D | 5e-19 | |
| d1hzta_ | 153 | d.113.1.2 (A:) Isopentenyl diphosphate isomerase { | 1e-17 | |
| d1u20a1 | 196 | d.113.1.1 (A:14-209) U8 snorna-binding protein x29 | 4e-09 | |
| d1sjya_ | 158 | d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc | 6e-09 | |
| d2a6ta2 | 151 | d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c | 4e-08 | |
| d2azwa1 | 147 | d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E | 6e-07 | |
| d1ryaa_ | 160 | d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD | 1e-06 | |
| d2b06a1 | 155 | d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s | 6e-06 | |
| d2fvva1 | 135 | d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat | 9e-06 | |
| d1xsba_ | 153 | d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas | 2e-05 | |
| d1irya_ | 156 | d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha | 3e-04 | |
| d1k2ea_ | 152 | d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa | 5e-04 | |
| d2b0va1 | 146 | d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N | 6e-04 | |
| d1nqza_ | 187 | d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco | 0.001 | |
| d2fmla2 | 202 | d.113.1.6 (A:3-204) Hypothetical protein EF2700, N | 0.002 | |
| d1vcda1 | 126 | d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t | 0.003 |
| >d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nudix superfamily: Nudix family: IPP isomerase-like domain: Hypothetical protein YfcD species: Escherichia coli [TaxId: 562]
Score = 84.5 bits (208), Expect = 1e-19
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 15/165 (9%)
Query: 8 EEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGM 67
E +D++ + R ++ HR + + ++L+QRR + KD PGM
Sbjct: 2 TEWVDIVNEENEVIA-QASREQMRAQCLRHRATYIVVH-DGMGKILVQRRTETKDFLPGM 59
Query: 68 WDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFAD 127
D ++ G + A + L SA+RE +EELGI A F F +N +
Sbjct: 60 LDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKN--------CRVWGA 111
Query: 128 VYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFV 172
++ + P LQ+ EVS V ++ EE + P +
Sbjct: 112 LFSCVSHGPF-----ALQEDEVSEVCWLTPEEITARCDEFTPDSL 151
|
| >d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162 | Back information, alignment and structure |
|---|
| >d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153 | Back information, alignment and structure |
|---|
| >d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196 | Back information, alignment and structure |
|---|
| >d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158 | Back information, alignment and structure |
|---|
| >d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151 | Back information, alignment and structure |
|---|
| >d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147 | Back information, alignment and structure |
|---|
| >d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160 | Back information, alignment and structure |
|---|
| >d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155 | Back information, alignment and structure |
|---|
| >d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135 | Back information, alignment and structure |
|---|
| >d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153 | Back information, alignment and structure |
|---|
| >d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
| >d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152 | Back information, alignment and structure |
|---|
| >d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146 | Back information, alignment and structure |
|---|
| >d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187 | Back information, alignment and structure |
|---|
| >d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202 | Back information, alignment and structure |
|---|
| >d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 757 | |||
| d2fkba1 | 161 | Hypothetical protein YfcD {Escherichia coli [TaxId | 99.92 | |
| d2o5fa1 | 162 | Hypothetical protein DR0079 {Deinococcus radiodura | 99.92 | |
| d1hzta_ | 153 | Isopentenyl diphosphate isomerase {Escherichia col | 99.89 | |
| d1sjya_ | 158 | Hypothetical protein DR1025 {Deinococcus radiodura | 99.7 | |
| d1ryaa_ | 160 | GDP-mannose mannosyl hydrolase NudD {Escherichia c | 99.68 | |
| d2b0va1 | 146 | Hypothetical protein NE0184 {Nitrosomonas europaea | 99.63 | |
| d1jkna_ | 165 | Diadenosine tetraphosphate hydrolase (Ap4A hydrola | 99.62 | |
| d1vcda1 | 126 | AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: | 99.62 | |
| d1vk6a2 | 131 | NADH pyrophosphatase {Escherichia coli [TaxId: 562 | 99.61 | |
| d2b06a1 | 155 | Hypothetical protein SP1235 (spr1115) {Streptococc | 99.61 | |
| d2fb1a2 | 147 | Hypothetical protein BT0354, N-terminal domain {Ba | 99.61 | |
| d1puna_ | 129 | Nucleoside triphosphate pyrophosphorylase (MutT) { | 99.6 | |
| d1ktga_ | 137 | Diadenosine tetraphosphate hydrolase (Ap4A hydrola | 99.58 | |
| d2a6ta2 | 151 | mRNA decapping enzyme Dcp2p catalytic domain {Schi | 99.56 | |
| d1nqza_ | 187 | Coenzyme A pyrophosphatase {Deinococcus radioduran | 99.56 | |
| d2fvva1 | 135 | Diphosphoinositol polyphosphate phosphohydrolase { | 99.55 | |
| d1irya_ | 156 | 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum | 99.54 | |
| d2azwa1 | 147 | Hypothetical protein EF1141 {Enterococcus faecalis | 99.52 | |
| d2fmla2 | 202 | Hypothetical protein EF2700, N-terminal domain {En | 99.51 | |
| d1v8ya_ | 158 | ADP-ribose pyrophosphatase {Thermus thermophilus [ | 99.49 | |
| d1xsba_ | 153 | Diadenosine tetraphosphate hydrolase (Ap4A hydrola | 99.44 | |
| d1k2ea_ | 152 | Hypothetical protein PAE3301 {Archaeon Pyrobaculum | 99.42 | |
| d1mqea_ | 202 | ADP-ribose pyrophosphatase {Mycobacterium tubercul | 99.38 | |
| d1vhza_ | 186 | ADP compounds hydrolase NudE {Escherichia coli [Ta | 99.31 | |
| d1rrqa2 | 127 | Adenine glycosylase MutY, C-terminal domain {Bacil | 99.26 | |
| d1g0sa_ | 209 | ADP-ribose pyrophosphatase {Escherichia coli [TaxI | 99.26 | |
| d1viua_ | 189 | ADP-ribose pyrophosphatase homologue YffH {Escheri | 99.13 | |
| d1u20a1 | 196 | U8 snorna-binding protein x29 {African clawed frog | 99.05 | |
| d1q33a_ | 292 | NUDT9 (mitochondrial ADP-ribose pyrophosphatase) { | 98.88 | |
| d1x51a1 | 142 | A/G-specific adenine DNA glycosylase {Human (Homo | 98.83 | |
| d2ovxa1 | 159 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 81.48 | |
| d1hfca_ | 157 | Fibroblast collagenase (MMP-1) {Human (Homo sapien | 80.36 | |
| d1hv5a_ | 162 | Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxI | 80.2 | |
| d1i76a_ | 163 | Neutrophil collagenase (MMP-8) {Human (Homo sapien | 80.15 |
| >d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nudix superfamily: Nudix family: IPP isomerase-like domain: Hypothetical protein YfcD species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=6.5e-25 Score=211.77 Aligned_cols=149 Identities=27% Similarity=0.366 Sum_probs=123.8
Q ss_pred ccccEEEEcCCCCcccccccccccccCCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHH
Q 004387 7 QEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISA 86 (757)
Q Consensus 7 ~~E~~~vvd~~~~~~G~~~~R~~~h~~g~~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAA 86 (757)
..|+|+|||++++++|. ++|..+|..|.+|++|+++|+| .+|+|||+||+..+..+||+|++|+||++++|||+++||
T Consensus 1 ~~E~~~i~d~~~~~ig~-~~R~~~~~~~~~h~~v~v~v~~-~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa 78 (161)
T d2fkba1 1 STEWVDIVNEENEVIAQ-ASREQMRAQCLRHRATYIVVHD-GMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESA 78 (161)
T ss_dssp CCCEEEEECTTSCEEEE-EEHHHHHHHTCCEEEEEEEEEC-SSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHH
T ss_pred CcEEEEEECCCCCEEeE-EEHHHhhcCCCcEeEEEEEEEe-CCCCEEEEEecCccccccccccccccccccccCcHHHHH
Confidence 36899999999999997 7999999999999999999999 588999999999999999999999899999999999999
Q ss_pred HHHHHHHhCCccCCCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHhc
Q 004387 87 QRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAK 166 (757)
Q Consensus 87 iREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~ 166 (757)
+||++|||||+.. .+..++.+.+... ..+.+.++|.+.... ++.++++|+.+++|++++|+.+.+.
T Consensus 79 ~REl~EE~Gi~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~Ev~~~~w~~~~el~~~~~- 144 (161)
T d2fkba1 79 RREAEEELGIAGV--PFAEHGQFYFEDK------NCRVWGALFSCVSHG-----PFALQEDEVSEVCWLTPEEITARCD- 144 (161)
T ss_dssp HHHHHHHHCCBSC--CCEEEEEEEEEET------TEEEEEEEEEEECCC-----CCCCCTTTEEEEEEECHHHHHTTGG-
T ss_pred HHHHHHHhCCccc--eeEEEEEEEeecC------CcEEEEEEEEEEECC-----CCcCChhHeeEEEEEeHHHHhhhhh-
Confidence 9999999999853 4667776655321 124556666654322 3477889999999999999987653
Q ss_pred CCCCcccC
Q 004387 167 DDPSFVPY 174 (757)
Q Consensus 167 ~~~~f~p~ 174 (757)
.|+|+
T Consensus 145 ---~~~P~ 149 (161)
T d2fkba1 145 ---EFTPD 149 (161)
T ss_dssp ---GBCHH
T ss_pred ---ccCCc
Confidence 36675
|
| >d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} | Back information, alignment and structure |
|---|
| >d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
| >d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
| >d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} | Back information, alignment and structure |
|---|
| >d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
| >d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
| >d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
|---|
| >d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|