Citrus Sinensis ID: 004394

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750------
MAPPAQAHRSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEKEEIRGATFNVSGYSAPLYDSSAASVQSELAIISSTSAGSAPSSSLAIDDLLGLGLSAAPAPEPASVPPSLKLNSKAILDPGTFQQKWRQLPISLSQVYLPFLTLILF
ccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHHccccccccccccccccccHHHccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHccc
ccccHHHccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHcEEEEEEcccccEEEHHHHHHHHHHHcHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHHHHccHHHHHcccHHHHHcccccccHHHHHHHHHHcccHHHcHcccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHc
mappaqahrspspsqpsgkgevsDLKSQLRQLagsrapgiddsKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNyakvnpdlALLTINFLQrdckdedpmiRGLALRSLCSLRVANLVEYLVgplglglkdnnsyVRTVAVIGVLKLYhisaptcidadfpptlkhlmlndpdpQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAkyvpldsneiFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLltlvssgspeqsYAVLSHLHILVMrapfifasdykhfycqynepsyvkKLKLEMLTAVANESNTYEIVTELCEYAanvdipiaRESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRkypqwshdciavvgsissqnvqePKAKAALIWMLGEysqdmqdaPYILESLtenweeepsAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVaervvnppkqaVSVFADTQSSEIKDRIFDEFNSlsvvyqkpsymftdkdyrgpfefsdelgnlsiaaesadnvvpaqgveandkdlllstsekeeirgatfnvsgysaplydssaaSVQSELAIISstsagsapssslaIDDLLglglsaapapepasvppslklnskaildpgtfqqkWRQLPISLSQVYLPFLTLILF
mappaqahrspspsqpsgkgEVSDLKSQLRQLagsrapgiddskreLFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPlglglkdnnsYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVgsissqnvqePKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEKEEIRGATFNVSGYSAPLYDSSAASVQSELAIISSTSAGSAPSSSLAIDDLLGLGLSAAPAPEPASVPPSLKLNSKAILDPGTFQQKWRQLPISLSQVYLPFLTLILF
MAPPAQAHRSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWsleastseeasrerealisKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVlgaalaaglaDFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEKEEIRGATFNVSGYSAPLYDSSAASVQSELaiisstsagsapssslaiddllglglsaapapepasvppslKLNSKAILDPGTFQQKWRQLPISLSQVYLPFLTLILF
*********************************************ELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL*************ALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDELGNLSIA**********************************FNV**Y**************************************************************AILDPGTFQQKWRQLPISLSQVYLPFLTLIL*
********************************************RELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVN*****************KDRIFDEFNSLSVVYQKPSY*************************************************************************************************************************************Q*KWRQLPISLSQVYLPFLTLI*F
*************************************PGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE***********EALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEKEEIRGATFNVSGYSAPLYDSSAASVQSELAII***********SLAIDDLLGLGLSAAPAPEPASVPPSLKLNSKAILDPGTFQQKWRQLPISLSQVYLPFLTLILF
********************EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYR*****S**********************************EKEEIRG*****SGYSA*LYDSSAASVQSELAIISSTSAGSAPSSSLAIDDLLGLGLSAAPAPEPASVPPSLKLNSKAILDPGTFQQKWRQLPISLSQVYLPFLTLILF
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MAPPAQAHRSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEKEEIRGATFNVSGYSAPLYDSSAASVQSELAIISSTSAGSAPSSSLAIDDLLGLGLSAAPAPEPASVPPSLKLNSKAILDPGTFQQKWRQLPISLSQVYLPFLTLILF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query756 2.2.26 [Sep-21-2011]
Q9LDK9841 Beta-adaptin-like protein yes no 0.981 0.882 0.824 0.0
Q54R84838 AP-4 complex subunit beta yes no 0.739 0.667 0.362 1e-110
Q9WV76738 AP-4 complex subunit beta yes no 0.719 0.737 0.375 1e-100
P63009 937 AP-2 complex subunit beta yes no 0.753 0.608 0.359 1e-99
Q08DS7 951 AP-1 complex subunit beta yes no 0.756 0.601 0.357 1e-99
P62944 937 AP-2 complex subunit beta no no 0.753 0.608 0.359 1e-99
P63010 937 AP-2 complex subunit beta yes no 0.753 0.608 0.359 1e-99
Q9DBG3 937 AP-2 complex subunit beta no no 0.753 0.608 0.359 2e-99
O81742 893 Beta-adaptin-like protein no no 0.752 0.637 0.367 8e-98
Q54X82 942 AP-1 complex subunit beta no no 0.740 0.594 0.357 1e-97
>sp|Q9LDK9|APBLA_ARATH Beta-adaptin-like protein A OS=Arabidopsis thaliana GN=BETAA-AD PE=1 SV=1 Back     alignment and function desciption
 Score = 1264 bits (3271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/748 (82%), Positives = 673/748 (89%), Gaps = 6/748 (0%)

Query: 1   MAPPAQAHRSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGID 60
           MAPPA + R PSPSQPSGK EVSDLK+QLRQLAGSRAPG+DDSKR+L+KKVISYMTIGID
Sbjct: 1   MAPPAASQRYPSPSQPSGKSEVSDLKTQLRQLAGSRAPGVDDSKRDLYKKVISYMTIGID 60

Query: 61  VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLA 120
           VS+VFGEMVMCSATSDIVLKKMCYLYVGNYAK NPDL+LLTINFLQRDCKDEDPMIRGLA
Sbjct: 61  VSSVFGEMVMCSATSDIVLKKMCYLYVGNYAKGNPDLSLLTINFLQRDCKDEDPMIRGLA 120

Query: 121 LRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180
           LRSLCSLRV NLVEYLVGPLG GLKDNNSYVRT+AV GVLKLYHIS  TCIDADFP TLK
Sbjct: 121 LRSLCSLRVPNLVEYLVGPLGSGLKDNNSYVRTIAVTGVLKLYHISPSTCIDADFPATLK 180

Query: 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWA 240
            LML+D D QVVANCLSALQEIWSLEAS SEEA RE+E+L+SKPVIYY LNRIKEF+EWA
Sbjct: 181 SLMLHDSDAQVVANCLSALQEIWSLEASHSEEACREKESLLSKPVIYYFLNRIKEFNEWA 240

Query: 241 QCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY 300
           QCL+LEL  KYVP DSN+IFDIMNLLEDRLQHANGAVVL+T+KVFL LTLSMTDVHQQVY
Sbjct: 241 QCLILELAVKYVPSDSNDIFDIMNLLEDRLQHANGAVVLATVKVFLQLTLSMTDVHQQVY 300

Query: 301 ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLE 360
           ERIK+PLLTLVSSGSPEQSYA+LSHLH+LV+RAPFIFA+DYKHFYCQYNEPSYVKKLKLE
Sbjct: 301 ERIKSPLLTLVSSGSPEQSYAILSHLHLLVVRAPFIFAADYKHFYCQYNEPSYVKKLKLE 360

Query: 361 MLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEM 420
           MLTAVANESNTYEIVTELCEYAANVDI IARESIRAVGKIALQQYDVNAIVDRLLQFLEM
Sbjct: 361 MLTAVANESNTYEIVTELCEYAANVDIAIARESIRAVGKIALQQYDVNAIVDRLLQFLEM 420

Query: 421 EKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ 480
           EKDYVTAE LVLVKDLLRKYPQWSHDCI+VVG ISS+N+QEPKAKAALIWMLGEY+QDM 
Sbjct: 421 EKDYVTAETLVLVKDLLRKYPQWSHDCISVVGGISSKNIQEPKAKAALIWMLGEYAQDMS 480

Query: 481 DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVH 540
           DAPY+LE+L ENWEEE SAEVRLHLLTA MKCFFKR PETQK LG ALAAG+ADFHQDVH
Sbjct: 481 DAPYVLENLIENWEEEHSAEVRLHLLTAAMKCFFKRAPETQKALGTALAAGIADFHQDVH 540

Query: 541 DRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYM 600
           DRALFY+R+LQY+V VAERVV+PPKQAVSVFADTQSSEIKDR+FDEFNSLSV+YQKPSYM
Sbjct: 541 DRALFYYRVLQYDVHVAERVVSPPKQAVSVFADTQSSEIKDRVFDEFNSLSVIYQKPSYM 600

Query: 601 FTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEKEEIRG-ATFNV 659
           FTDK++RGPFEFSDE+GN+SI  E++ ++VPAQ  EANDKDLLL   EK+E +G +  N 
Sbjct: 601 FTDKEHRGPFEFSDEVGNISITPEASSDIVPAQQYEANDKDLLLGIDEKDENKGVSNNNG 660

Query: 660 SGYSAPLYDSSA--ASVQSELAIISSTSAGSAPSSSLAIDDLLGLGLSAAPAPEPASVPP 717
           S Y+AP  +SS+   S   ELAI    ++ + P  S   DDL GLGLS APAP P+    
Sbjct: 661 SAYTAPSLESSSNITSQMQELAISGPATSATTP-QSFGFDDLFGLGLSTAPAPTPSPP-- 717

Query: 718 SLKLNSKAILDPGTFQQKWRQLPISLSQ 745
            LKLN++A LDPG FQQKWRQLPISL+Q
Sbjct: 718 LLKLNARAALDPGAFQQKWRQLPISLTQ 745
Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
Arabidopsis thaliana (taxid: 3702)
>sp|Q54R84|AP4B_DICDI AP-4 complex subunit beta OS=Dictyostelium discoideum GN=ap4b1 PE=3 SV=1 Back     alignment and function description
>sp|Q9WV76|AP4B1_MOUSE AP-4 complex subunit beta-1 OS=Mus musculus GN=Ap4b1 PE=2 SV=2 Back     alignment and function description
>sp|P63009|AP2B1_BOVIN AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2 Back     alignment and function description
>sp|Q08DS7|AP1B1_BOVIN AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1 Back     alignment and function description
>sp|P62944|AP2B1_RAT AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1 Back     alignment and function description
>sp|P63010|AP2B1_HUMAN AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1 Back     alignment and function description
>sp|Q9DBG3|AP2B1_MOUSE AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1 Back     alignment and function description
>sp|O81742|APBLC_ARATH Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD PE=1 SV=2 Back     alignment and function description
>sp|Q54X82|AP1B_DICDI AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query756
449517253848 PREDICTED: LOW QUALITY PROTEIN: beta-ada 0.985 0.878 0.856 0.0
224092344842 predicted protein [Populus trichocarpa] 0.981 0.881 0.873 0.0
225430033844 PREDICTED: beta-adaptin-like protein A [ 0.985 0.882 0.867 0.0
449437034848 PREDICTED: beta-adaptin-like protein A-l 0.985 0.878 0.848 0.0
255551058848 AP-2 complex subunit beta-1, putative [R 0.985 0.878 0.863 0.0
356507875845 PREDICTED: beta-adaptin-like protein A-l 0.982 0.879 0.865 0.0
356518312845 PREDICTED: beta-adaptin-like protein A-l 0.982 0.879 0.853 0.0
297807185842 adaptin family protein [Arabidopsis lyra 0.982 0.882 0.830 0.0
365222858840 Hop-interacting protein THI006 [Solanum 0.982 0.884 0.836 0.0
15239071841 beta-adaptin-like protein A [Arabidopsis 0.981 0.882 0.824 0.0
>gi|449517253|ref|XP_004165660.1| PREDICTED: LOW QUALITY PROTEIN: beta-adaptin-like protein A-like [Cucumis sativus] Back     alignment and taxonomy information
 Score = 1323 bits (3424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/752 (85%), Positives = 685/752 (91%), Gaps = 7/752 (0%)

Query: 1   MAPPAQAHRSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGID 60
           MAPPA +HR+ SPSQPSGK EVSDLKSQLRQLAGSRAPG++DSKRELFKKVISYMTIGID
Sbjct: 1   MAPPAPSHRTSSPSQPSGKSEVSDLKSQLRQLAGSRAPGVEDSKRELFKKVISYMTIGID 60

Query: 61  VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLA 120
           VS++FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKD+DPMIRGLA
Sbjct: 61  VSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDDDPMIRGLA 120

Query: 121 LRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180
           LRSLCSLRVANLVEYLVGPLG GLKD+NSYVR VAV GVLKLY ISA TC DADFP TLK
Sbjct: 121 LRSLCSLRVANLVEYLVGPLGSGLKDSNSYVRMVAVTGVLKLYRISASTCTDADFPATLK 180

Query: 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWA 240
           HLMLND D QVVANCLSALQEI + EAS+ EEASREREAL+SKPV+YYLLNRIKEF+EWA
Sbjct: 181 HLMLNDRDTQVVANCLSALQEILTSEASSLEEASREREALLSKPVVYYLLNRIKEFNEWA 240

Query: 241 QCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY 300
           QCL+LELV+KYVP DSNEIFDIMNLLEDRLQHANGAVVL+T KVFLHLTLSMTDVHQQVY
Sbjct: 241 QCLILELVSKYVPSDSNEIFDIMNLLEDRLQHANGAVVLATTKVFLHLTLSMTDVHQQVY 300

Query: 301 ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLE 360
           ERIKAPLLTLVSSGSPEQSYAVLSHLH+LVMRAPF+F++DYK+FYCQYNEPSY KKLKLE
Sbjct: 301 ERIKAPLLTLVSSGSPEQSYAVLSHLHLLVMRAPFVFSADYKYFYCQYNEPSYXKKLKLE 360

Query: 361 MLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEM 420
           MLTAVANESNTYEIVTELCEY ANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEM
Sbjct: 361 MLTAVANESNTYEIVTELCEYVANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEM 420

Query: 421 EKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ 480
           EKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISS+N+QEPKAKAALIWMLGEYSQDMQ
Sbjct: 421 EKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSKNIQEPKAKAALIWMLGEYSQDMQ 480

Query: 481 DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVH 540
           DAPYILESL ENW++EPSAEVRLHLLTAVMKCFFKRPPETQK LGAALA GLADFHQDVH
Sbjct: 481 DAPYILESLVENWDDEPSAEVRLHLLTAVMKCFFKRPPETQKALGAALAVGLADFHQDVH 540

Query: 541 DRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYM 600
           DRALFY+RLLQYNVSVAERVVNPPKQAVSVFADTQSSE+KDRIFDEFNSLSV+YQKPSYM
Sbjct: 541 DRALFYYRLLQYNVSVAERVVNPPKQAVSVFADTQSSEVKDRIFDEFNSLSVIYQKPSYM 600

Query: 601 FTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEKEEIRGATFNVS 660
           FTDK++RGPFEFSDELGNLSI  ESAD VVP Q VEAND DLLLSTS +EE R  + N S
Sbjct: 601 FTDKEHRGPFEFSDELGNLSIGVESADTVVPTQQVEANDNDLLLSTSVEEETRVVSNNGS 660

Query: 661 GYSAPLYDSSAASVQSELAIISSTS----AGSAPSSSLAIDDLLGLGL---SAAPAPEPA 713
            YSAP Y+ S  S+  +  + S+ S     G AP SS   DDL GLGL   SA+P    A
Sbjct: 661 AYSAPSYEGSIGSLIPQAPLESAVSNPSIPGPAPQSSSPFDDLFGLGLPTASASPITPAA 720

Query: 714 SVPPSLKLNSKAILDPGTFQQKWRQLPISLSQ 745
             PP L+L SKA+LDPGTFQQKWRQLPIS+SQ
Sbjct: 721 PSPPPLQLKSKAVLDPGTFQQKWRQLPISISQ 752

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224092344|ref|XP_002309568.1| predicted protein [Populus trichocarpa] gi|222855544|gb|EEE93091.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225430033|ref|XP_002284239.1| PREDICTED: beta-adaptin-like protein A [Vitis vinifera] gi|296081892|emb|CBI20897.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449437034|ref|XP_004136297.1| PREDICTED: beta-adaptin-like protein A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255551058|ref|XP_002516577.1| AP-2 complex subunit beta-1, putative [Ricinus communis] gi|223544397|gb|EEF45918.1| AP-2 complex subunit beta-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356507875|ref|XP_003522688.1| PREDICTED: beta-adaptin-like protein A-like [Glycine max] Back     alignment and taxonomy information
>gi|356518312|ref|XP_003527823.1| PREDICTED: beta-adaptin-like protein A-like [Glycine max] Back     alignment and taxonomy information
>gi|297807185|ref|XP_002871476.1| adaptin family protein [Arabidopsis lyrata subsp. lyrata] gi|297317313|gb|EFH47735.1| adaptin family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|365222858|gb|AEW69781.1| Hop-interacting protein THI006 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|15239071|ref|NP_196710.1| beta-adaptin-like protein A [Arabidopsis thaliana] gi|75263777|sp|Q9LDK9.1|APBLA_ARATH RecName: Full=Beta-adaptin-like protein A; Short=At-bA-Ad; Short=At-betaA-Ad; AltName: Full=AP complex subunit beta-A; AltName: Full=Adaptor protein complex AP subunit beta-A; AltName: Full=Beta-adaptin A; AltName: Full=Clathrin assembly protein complex beta large chain A gi|7385051|gb|AAF61671.1| beta-adaptin-like protein A [Arabidopsis thaliana] gi|7573406|emb|CAB87709.1| beta-adaptin-like protein A [Arabidopsis thaliana] gi|332004302|gb|AED91685.1| beta-adaptin-like protein A [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query756
GENEDB_PFALCIPARUM|MAL7P1.164 858 MAL7P1.164 "adapter-related pr 0.755 0.665 0.362 4e-106
UNIPROTKB|Q8IBF8 858 MAL7P1.164 "Adapter-related pr 0.755 0.665 0.362 4e-106
DICTYBASE|DDB_G0283319838 ap4b1 "adaptor-related protein 0.481 0.434 0.410 4.6e-101
FB|FBgn0010380 921 AP-1-2beta "Adaptor Protein co 0.804 0.660 0.357 2.8e-98
TAIR|locus:2117924 893 AT4G23460 [Arabidopsis thalian 0.75 0.634 0.357 1.4e-97
MGI|MGI:1096368 943 Ap1b1 "adaptor protein complex 0.796 0.638 0.352 3.7e-96
UNIPROTKB|Q10567 949 AP1B1 "AP-1 complex subunit be 0.779 0.620 0.356 9.7e-96
UNIPROTKB|F1NCI1 922 AP1B1 "Uncharacterized protein 0.787 0.645 0.354 1.6e-95
UNIPROTKB|E2RRJ6 939 AP1B1 "Uncharacterized protein 0.801 0.645 0.347 1.6e-95
RGD|2064 949 Ap1b1 "adaptor-related protein 0.796 0.634 0.350 1.6e-95
GENEDB_PFALCIPARUM|MAL7P1.164 MAL7P1.164 "adapter-related protein, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
 Score = 1033 (368.7 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
 Identities = 217/599 (36%), Positives = 373/599 (62%)

Query:    12 SPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMC 71
             SPSQ     E++ LK  L++L   +    DD KRE+ KKVI+YMT+G+DVS +F +++M 
Sbjct:     2 SPSQ----SEINKLKDVLKKLPQEKN---DDKKREVLKKVIAYMTLGVDVSKLFPDIIMI 54

Query:    72 SATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN 131
             S+T+DI+ KKM YLY+ NYA+ N +L+LLTIN LQ+D KD+DP+IRGLALR+ C+LR+ N
Sbjct:    55 SSTNDIIQKKMIYLYLNNYAETNSELSLLTINTLQKDSKDDDPIIRGLALRTFCNLRINN 114

Query:   132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQV 191
             L EY+ GPL  GL D NSYVR +A+I  +KL  ++    I  D    LK+ +L D DPQ 
Sbjct:   115 LFEYIEGPLFNGLNDKNSYVRRIAIISCVKLIKMNPDLSIRNDIIKILKNKLL-DKDPQC 173

Query:   192 VANCLSALQEIWXXXXXXXXXXXXXXXXXXXKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251
             + N + AL EI                    K +++ +LN++  F+EW + ++L +V+ Y
Sbjct:   174 IINSVHALNEI----------LIDEGGLKVNKEIVFNMLNKLSHFNEWGKSVILYIVSTY 223

Query:   252 VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLV 311
             +P + +E++DIMN+LE+ ++  +  V L+ +K FL+ +++ T++  Q+++R+K PLLTL+
Sbjct:   224 IPENEDEMYDIMNILENHIRDFSSTVFLACLKCFLNFSINDTNLQIQIFQRMKDPLLTLI 283

Query:   312 SSGSPEQSYAVLSHLHILVMRAPF----IFASDYKHFYCQYNEPSYVKKLKLEMLTAVAN 367
             S+ S E +Y VL H ++L+  A      IF  DYKHF+ +YN+ +Y+K +KL++L +VA+
Sbjct:   284 STSSNEIAYIVLLHTNLLLHEANKLNYKIFDYDYKHFFFRYNDLTYIKDIKLDILVSVAS 343

Query:   368 ESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQ-QYDVNAIVD-RLLQFLEMEKDYV 425
             ++N   I+ EL EY ++ ++ IA+++I ++G IAL+    ++ +V+  L  F+ M   Y+
Sbjct:   344 KNNVVLIINELSEYISDANVEIAQKAIESIGSIALKIPKCISRVVELSLSNFMTMNYSYI 403

Query:   426 TAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYI 485
              +  + ++ ++LRKY +++   I  +    ++ +       + IW++GEY + +++APY+
Sbjct:   404 CSATIKILVNILRKYEEYTKLIIEEIIKHGNRLIDNGGI-ISYIWIIGEYCEYIEEAPYL 462

Query:   486 LESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVXXXXXXXXXXDF-HQDVHDRAL 544
             LE          S    L LLTA +K  ++RP E + +          ++ + ++ D+  
Sbjct:   463 LEEYINL--RNCSYLFMLELLTACVKVLYRRPAEMKNIVSTLFDNILKNYKYPELTDKMF 520

Query:   545 FYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTD 603
             FY++LL YN   A  ++   K+ V  F+++  + + D++++EFN+LSV+Y++P   F +
Sbjct:   521 FYYKLLSYNYKEAFHIIACKKKIVKNFSESNENLLLDKLYNEFNTLSVLYKQPLNKFVE 579
GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=ISS
UNIPROTKB|Q8IBF8 MAL7P1.164 "Adapter-related protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283319 ap4b1 "adaptor-related protein complex 4, beta 1 subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0010380 AP-1-2beta "Adaptor Protein complex 1/2, beta subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2117924 AT4G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1096368 Ap1b1 "adaptor protein complex AP-1, beta 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q10567 AP1B1 "AP-1 complex subunit beta-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCI1 AP1B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RRJ6 AP1B1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|2064 Ap1b1 "adaptor-related protein complex 1, beta 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LDK9APBLA_ARATHNo assigned EC number0.82480.98140.8822yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query756
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 3e-93
PTZ00429746 PTZ00429, PTZ00429, beta-adaptin; Provisional 8e-75
COG5096757 COG5096, COG5096, Vesicle coat complex, various su 2e-60
pfam12717171 pfam12717, Cnd1, non-SMC mitotic condensation comp 1e-11
pfam1364688 pfam13646, HEAT_2, HEAT repeats 3e-04
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information 
 Score =  300 bits (770), Expect = 3e-93
 Identities = 154/522 (29%), Positives = 270/522 (51%), Gaps = 32/522 (6%)

Query: 41  DDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL 100
              K+E  KK+I  + +G D+S +F E+V   A++D  LK++ YLY+   A+ +PDLA+L
Sbjct: 19  PRKKKEAVKKLIYLIMLGEDISFLFFEVVKLVASNDFTLKRLGYLYLKLLAEESPDLAIL 78

Query: 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVL 160
             N +++D +  +P+IRGLALR+L  +RV  L   L   +   L D + YVR  A + +L
Sbjct: 79  VTNSIKKDLQSPNPLIRGLALRTLSCIRVPELARDLAPDIKKLLVDRDPYVRKKAALAIL 138

Query: 161 KLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREAL 220
           KLY        D   P  LK L L+D DP VV+  ++ L EI   +     +       L
Sbjct: 139 KLYRKDPDLVRDFLVPE-LKEL-LSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPL---L 193

Query: 221 ISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLS 280
           + +     L N +   + W Q  +L L+ +Y P D  E  +++  + + LQ++N AV+  
Sbjct: 194 VRR-----LCNLLTVCNPWLQVKILRLLTRYAPQDPREPKELLEDILNLLQNSNNAVLYE 248

Query: 281 TIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM-RAPFIFAS 339
            +K  +HL     D   ++       L  L+SS      Y  L +L+ ++    P +   
Sbjct: 249 AVKTIIHL-----DPEPELIVLAVNALGRLLSSPDENLRYVALRNLNKILEKHPPAVQHL 303

Query: 340 DYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV-DIPIARESIRAVG 398
           D   F  + ++   ++   L++L  + +ESN  EIV EL +Y + + D     + ++A+G
Sbjct: 304 DLIIFCLKTDDDISIRLRALDLLYKLVDESNVKEIVKELLKYVSEIADPEFKIKLVKAIG 363

Query: 399 KIALQQY--DVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIA--VVGSI 454
           ++A +++  D    +D LL+ L +   YV  E + +++D++RKYP+   + I   +   +
Sbjct: 364 RLA-EKFPTDAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIRKYPE-LREYILEHLCELL 421

Query: 455 SSQNVQEPKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCF 513
             ++++ P+A+AA +W+LGEY + + +    +L S+ E +  E S +VRL LLTA++K  
Sbjct: 422 --EDIESPEARAAALWILGEYGELIPNSPSDLLRSILEVFVLE-SLKVRLALLTALVK-L 477

Query: 514 FKRPPE---TQKVLGAALA-AGLADFHQDVHDRALFYHRLLQ 551
               P+      ++   L+ A       ++ DRA+ Y RLL 
Sbjct: 478 SLTFPDEEVQNLIVQVVLSLATQDSSDLELRDRAVEYLRLLS 519

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional Back     alignment and domain information
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 756
PTZ00429746 beta-adaptin; Provisional 100.0
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 100.0
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 100.0
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 100.0
COG5096757 Vesicle coat complex, various subunits [Intracellu 100.0
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 100.0
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 100.0
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 100.0
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.39
PTZ00429746 beta-adaptin; Provisional 99.33
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.12
PRK09687280 putative lyase; Provisional 99.07
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.05
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.03
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.97
PRK09687280 putative lyase; Provisional 98.96
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.95
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.9
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.64
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.62
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.62
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.57
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.39
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.33
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 98.28
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 98.17
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.17
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.14
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.0
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.95
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 97.88
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.87
PF14764459 SPG48: AP-5 complex subunit, vesicle trafficking 97.86
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 97.83
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.76
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 97.75
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 97.74
TIGR02270410 conserved hypothetical protein. Members are found 97.67
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.65
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 97.6
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.56
KOG4224550 consensus Armadillo repeat protein VAC8 required f 97.51
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.51
KOG0414 1251 consensus Chromosome condensation complex Condensi 97.46
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.45
TIGR02270410 conserved hypothetical protein. Members are found 97.45
KOG18241233 consensus TATA-binding protein-interacting protein 97.43
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.43
PF05804708 KAP: Kinesin-associated protein (KAP) 97.26
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.24
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.21
KOG04141251 consensus Chromosome condensation complex Condensi 97.19
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.08
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.06
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.04
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.03
KOG1242569 consensus Protein containing adaptin N-terminal re 96.98
KOG2259823 consensus Uncharacterized conserved protein [Funct 96.93
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.92
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.87
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 96.86
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.86
COG5098 1128 Chromosome condensation complex Condensin, subunit 96.83
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.76
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 96.54
COG50981128 Chromosome condensation complex Condensin, subunit 96.52
PF05804708 KAP: Kinesin-associated protein (KAP) 96.51
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 96.47
KOG2259823 consensus Uncharacterized conserved protein [Funct 96.45
COG5096757 Vesicle coat complex, various subunits [Intracellu 96.4
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 96.33
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.2
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 96.16
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 96.11
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 96.09
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 96.06
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.05
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 95.98
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 95.95
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 95.94
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 95.72
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 95.49
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.31
KOG1242569 consensus Protein containing adaptin N-terminal re 95.14
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 94.91
KOG1820815 consensus Microtubule-associated protein [Cytoskel 94.83
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 94.69
KOG2956516 consensus CLIP-associating protein [General functi 94.42
PF14500262 MMS19_N: Dos2-interacting transcription regulator 94.38
smart00638574 LPD_N Lipoprotein N-terminal Domain. 94.37
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 94.34
KOG4224550 consensus Armadillo repeat protein VAC8 required f 94.3
KOG12481176 consensus Uncharacterized conserved protein [Funct 94.2
KOG12481176 consensus Uncharacterized conserved protein [Funct 93.85
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 93.85
PF1036392 DUF2435: Protein of unknown function (DUF2435) 93.5
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 93.42
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 93.4
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 93.39
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 93.32
PF13251182 DUF4042: Domain of unknown function (DUF4042) 93.26
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 93.05
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 92.94
PF08167165 RIX1: rRNA processing/ribosome biogenesis 92.8
PF1036392 DUF2435: Protein of unknown function (DUF2435) 92.23
KOG2062929 consensus 26S proteasome regulatory complex, subun 92.18
KOG0567289 consensus HEAT repeat-containing protein [General 91.32
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 91.3
KOG09151702 consensus Uncharacterized conserved protein [Funct 91.24
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 91.16
KOG0567289 consensus HEAT repeat-containing protein [General 90.85
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 90.85
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 90.75
KOG0413 1529 consensus Uncharacterized conserved protein relate 90.43
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 89.89
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 89.42
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 89.09
smart00638574 LPD_N Lipoprotein N-terminal Domain. 88.79
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 88.64
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 88.43
KOG2025 892 consensus Chromosome condensation complex Condensi 87.63
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 87.6
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 87.44
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 87.43
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 87.34
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 87.31
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 86.61
KOG1293678 consensus Proteins containing armadillo/beta-caten 85.14
KOG4653982 consensus Uncharacterized conserved protein [Funct 85.02
KOG4413524 consensus 26S proteasome regulatory complex, subun 84.72
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 84.44
KOG1293678 consensus Proteins containing armadillo/beta-caten 84.3
KOG2025 892 consensus Chromosome condensation complex Condensi 84.13
PF11935239 DUF3453: Domain of unknown function (DUF3453); Int 83.09
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 82.96
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 82.79
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 82.35
KOG2933334 consensus Uncharacterized conserved protein [Funct 81.88
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 81.41
PF05004309 IFRD: Interferon-related developmental regulator ( 81.07
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 80.83
KOG2032533 consensus Uncharacterized conserved protein [Funct 80.63
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 80.53
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 80.45
KOG2062929 consensus 26S proteasome regulatory complex, subun 80.23
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-115  Score=1021.92  Aligned_cols=585  Identities=29%  Similarity=0.474  Sum_probs=537.4

Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHH
Q 004394            9 RSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVG   88 (756)
Q Consensus         9 ~~~~~~~~~~k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~   88 (756)
                      +.+.-|..++|||++|||++|++       .+..+|++++||+|++|++|+|||++|++|+++++|+|+++|||||||++
T Consensus        21 ~~~~~f~~~~kge~~ELr~~L~s-------~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~   93 (746)
T PTZ00429         21 TGSKYFAQTRRGEGAELQNDLNG-------TDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVL   93 (746)
T ss_pred             CccccccccccchHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45567778899999999999986       34578999999999999999999999999999999999999999999999


Q ss_pred             HccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC
Q 004394           89 NYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP  168 (756)
Q Consensus        89 ~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~  168 (756)
                      +|++.+||+++|+||+|+||++|+||++||+|||+||+|+.+++++++.++|++++.|++|||||+|++|++|+|+.+|+
T Consensus        94 ~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe  173 (746)
T PTZ00429         94 STARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ  173 (746)
T ss_pred             HHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHH
Q 004394          169 TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELV  248 (756)
Q Consensus       169 ~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL  248 (756)
                      .+.+.+|.+.|.++ ++|+|++|++||+.+|.+|...+|+.        +. +.++++++|++.+++++||+|+.||++|
T Consensus       174 lv~~~~~~~~L~~L-L~D~dp~Vv~nAl~aL~eI~~~~~~~--------l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL  243 (746)
T PTZ00429        174 LFYQQDFKKDLVEL-LNDNNPVVASNAAAIVCEVNDYGSEK--------IE-SSNEWVNRLVYHLPECNEWGQLYILELL  243 (746)
T ss_pred             cccccchHHHHHHH-hcCCCccHHHHHHHHHHHHHHhCchh--------hH-HHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            98778999999997 79999999999999999998766532        22 2356799999999999999999999999


Q ss_pred             HhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 004394          249 AKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH  327 (756)
Q Consensus       249 ~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~-~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~  327 (756)
                      .+|.|.+.++++++++.+.++|+|+|+||+++|+|+|+++.... ++...+++.|++.+|++|++ +++|+||++|++|.
T Consensus       244 ~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s-s~~eiqyvaLr~I~  322 (746)
T PTZ00429        244 AAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR-RDAETQYIVCKNIH  322 (746)
T ss_pred             HhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998653 45667788899999998864 68999999999999


Q ss_pred             HHHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh
Q 004394          328 ILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV  407 (756)
Q Consensus       328 ~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~  407 (756)
                      .|++++|.+|++|++.|||+++||.|||++|||||+.|||++|+.+|++||.+|+++.|.+|++++|++||+||.|+|+.
T Consensus       323 ~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~  402 (746)
T PTZ00429        323 ALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV  402 (746)
T ss_pred             HHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             -hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHH-hhhccCCchhHHHHHHhHhccCCCCCCChHHH
Q 004394          408 -NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGS-ISSQNVQEPKAKAALIWMLGEYSQDMQDAPYI  485 (756)
Q Consensus       408 -~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~-l~~~~i~~p~ak~a~iWiLGEy~~~i~~~~~i  485 (756)
                       .|||++|+++++.+.+++ .|++.++++|+|+||+.+  .+..+.. +..+.+++|++|++++||+|||++.+++++++
T Consensus       403 a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~  479 (746)
T PTZ00429        403 APDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDI  479 (746)
T ss_pred             HHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHH
Confidence             899999999999877765 588999999999999863  3333332 22367899999999999999999999999999


Q ss_pred             HHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhc-CCChHHHhHHHHHHHHhcCCH--HHHHhhcC
Q 004394          486 LESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLA-DFHQDVHDRALFYHRLLQYNV--SVAERVVN  562 (756)
Q Consensus       486 L~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~-d~d~dVrdRA~~Y~rLL~~~~--e~a~~vv~  562 (756)
                      |+.++++|.+|+ .+||+++||+++|+|+++|++++++++++|+.+++ +.|+||||||++|||||+.++  +.|++||+
T Consensus       480 L~~~i~~f~~E~-~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~~~~a~~iv~  558 (746)
T PTZ00429        480 IQRFIDTIMEHE-QRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGITVAQMKKVVH  558 (746)
T ss_pred             HHHHHhhhccCC-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCcHHHHHHHHc
Confidence            999999999999 99999999999999999999999999999998865 579999999999999999874  66899999


Q ss_pred             CCCCCCcccccCCChHHHHHHHhhcCcchhhccCCCCccccCCCCCCcccccc
Q 004394          563 PPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDE  615 (756)
Q Consensus       563 ~~~p~i~~~~~~~~~~~~~~l~~~~~tls~vy~kp~~~f~~~~~~~~~~~~~~  615 (756)
                      +++|++....+..+++++++|+.+|||+|+||+||++.|+++.+.+..+..++
T Consensus       559 ~~~~~i~~~~~~~d~~~l~~L~~~~~tlssvY~kp~~~f~~~~~~~~~~~~~~  611 (746)
T PTZ00429        559 GQMVPVNVDSTFSDAMTMADLKKSLNTAAIVFARPYQSFLPPYGLADVELDEE  611 (746)
T ss_pred             CCCCCCCcccccCCHHHHHHHHHhcCceeeeecCCHHHhcCchhccccccccc
Confidence            99999876555567789999999999999999999999999998887776554

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query756
2vgl_B591 Ap2 Clathrin Adaptor Core Length = 591 4e-98
2xa7_B592 Ap2 Clathrin Adaptor Core In Active Complex With Ca 4e-98
1w63_B584 Ap1 Clathrin Adaptor Core Length = 584 1e-93
2jkr_A623 Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm 2e-07
2vgl_A621 Ap2 Clathrin Adaptor Core Length = 621 2e-07
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591 Back     alignment and structure 
Iteration: 1

 Score =  355 bits (912), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 210/592 (35%), Positives = 335/592 (56%), Gaps = 23/592 (3%)
Query: 17  SGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSD 76
           + KGE+ +LK++L      +       ++E  KKVI+ MT+G DVS++F ++V C  T +
Sbjct: 10  NKKGEIFELKAELNNEKKEK-------RKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62
Query: 77  IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYL 136
           + LKK+ YLY+ NYAK  PD+A++ +N   +DC+D +P+IR LA+R++  +RV  + EYL
Sbjct: 63  LELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYL 122
Query: 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCL 196
             PL   LKD + YVR  A + V KL+ I+A    D  F  +L+ L + D +P VVAN +
Sbjct: 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDL-IADSNPMVVANAV 181
Query: 197 SALQEIWXXXXXXXXXXXXXXXXXXXKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS 256
           +AL EI                       I  LL  + E +EW Q  +L+ ++ Y P D 
Sbjct: 182 AALSEISESHPNSNLLDLNPQN-------INKLLTALNECTEWGQIFILDCLSNYNPKDD 234
Query: 257 NEIFDIMNLLEDRLQHANGAVVLSTIKV---FLHLTLSMTDVHQQVYERIKAPLLTLVSS 313
            E   I   +  RL HAN AVVLS +KV   FL L    +D +  + +++  PL+TL+ S
Sbjct: 235 REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-S 293
Query: 314 GSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYE 373
           G PE  Y  L +++++V + P I   + K F+ +YN+P YVK  KL+++  +A+++N  +
Sbjct: 294 GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ 353
Query: 374 IVTELCEYAANVDIPIARESIRAVGKIALQ-QYDVNAIVDRLLQFLEMEKDYVTAEALVL 432
           ++ EL EYA  VD+   R+++RA+G+ A++ +      V  LL  ++ + +YV  EA+V+
Sbjct: 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVV 413
Query: 433 VKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTEN 492
           ++D+ RKYP      IA +   +  ++ EP A+AA+IW++GEY++ + +A  +LES  E 
Sbjct: 414 IRDIFRKYPNKYESIIATLCE-NLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEG 472
Query: 493 WEEEPSAEVRLHLLTAVMKCFFKRPPETQKVXXXXXXXXXXDFHQ-DVHDRALFYHRLLQ 551
           + +E S +V+L LLTA++K F K+P ETQ++          D    D+ DR   Y RLL 
Sbjct: 473 FHDE-STQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLS 531
Query: 552 YNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTD 603
            +   A+ VV   K  +S   D     + D +     SL+ VY KP   F +
Sbjct: 532 TDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVE 583
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592 Back     alignment and structure
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584 Back     alignment and structure
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm( Phosphos)qikrllse Length = 623 Back     alignment and structure
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core Length = 621 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query756
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 0.0
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 1e-113
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 1e-112
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 2e-51
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 1e-10
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-08
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-08
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 1e-05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 2e-05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 6e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 2e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-04
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-05
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 3e-05
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 5e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-04
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
 Score =  542 bits (1398), Expect = 0.0
 Identities = 208/595 (34%), Positives = 339/595 (56%), Gaps = 23/595 (3%)

Query: 15  QPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSAT 74
             + KGE+ +LK++L            + ++E  KKVI+ MT+G DVS++F ++V C  T
Sbjct: 8   TTNKKGEIFELKAELNN-------EKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQT 60

Query: 75  SDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVE 134
            ++ LKK+ YLY+ NYAK  PD+A++ +N   +DC+D +P+IR LA+R++  +RV  + E
Sbjct: 61  DNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITE 120

Query: 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVAN 194
           YL  PL   LKD + YVR  A + V KL+ I+A    D  F  +L+ L + D +P VVAN
Sbjct: 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDL-IADSNPMVVAN 179

Query: 195 CLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL 254
            ++AL EI       SE         ++   I  LL  + E +EW Q  +L+ ++ Y P 
Sbjct: 180 AVAALSEI-------SESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK 232

Query: 255 DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM---TDVHQQVYERIKAPLLTLV 311
           D  E   I   +  RL HAN AVVLS +KV +     +   +D +  + +++  PL+TL+
Sbjct: 233 DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL 292

Query: 312 SSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNT 371
           S   PE  Y  L +++++V + P I   + K F+ +YN+P YVK  KL+++  +A+++N 
Sbjct: 293 SG-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351

Query: 372 YEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNA-IVDRLLQFLEMEKDYVTAEAL 430
            +++ EL EYA  VD+   R+++RA+G+ A++        V  LL  ++ + +YV  EA+
Sbjct: 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAI 411

Query: 431 VLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLT 490
           V+++D+ RKYP      IA +   +  ++ EP A+AA+IW++GEY++ + +A  +LES  
Sbjct: 412 VVIRDIFRKYPNKYESIIATLCE-NLDSLDEPDARAAMIWIVGEYAERIDNADELLESFL 470

Query: 491 ENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADF-HQDVHDRALFYHRL 549
           E + +E   +V+L LLTA++K F K+P ETQ+++   L+    D  + D+ DR   Y RL
Sbjct: 471 EGFHDES-TQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRL 529

Query: 550 LQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDK 604
           L  +   A+ VV   K  +S   D     + D +     SL+ VY KP   F + 
Sbjct: 530 LSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEG 584
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query756
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 100.0
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 100.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 100.0
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.73
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.61
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.56
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.56
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.53
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.47
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.45
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.44
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 99.43
1qgr_A876 Protein (importin beta subunit); transport recepto 99.43
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.42
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.41
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.41
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.4
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.4
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.38
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.37
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.36
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.35
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.34
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.31
1qgr_A876 Protein (importin beta subunit); transport recepto 99.3
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.3
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.21
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.18
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.17
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.14
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.12
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.12
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.11
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.09
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.09
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.08
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.06
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.04
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.98
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.96
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.9
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.9
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.87
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.83
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.83
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.81
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.6
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.57
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.5
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.42
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.41
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 98.38
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.32
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.31
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.28
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.27
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.2
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.2
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.17
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.16
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.15
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.08
3nmz_A458 APC variant protein; protein-protein complex, arma 98.07
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.06
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.05
3nmz_A458 APC variant protein; protein-protein complex, arma 98.03
2x19_B 963 Importin-13; nuclear transport, protein transport; 98.02
2x1g_F 971 Cadmus; transport protein, developmental protein, 97.96
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.81
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.8
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.79
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.74
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.59
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.4
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.3
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.21
2x19_B963 Importin-13; nuclear transport, protein transport; 97.13
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.06
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.02
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.88
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 96.86
2x1g_F971 Cadmus; transport protein, developmental protein, 96.86
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.8
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 96.6
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.51
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 96.43
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 96.43
3grl_A651 General vesicular transport factor P115; vesicle t 96.43
3grl_A651 General vesicular transport factor P115; vesicle t 96.22
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 95.79
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 95.7
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 95.41
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 95.39
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 95.32
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 95.22
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 94.93
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 94.76
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 94.48
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 93.67
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 93.13
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 92.41
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 92.27
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 91.88
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 91.47
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 90.6
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 90.54
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 89.53
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 89.23
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 88.8
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 85.21
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 84.95
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 80.1
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
Probab=100.00  E-value=2e-93  Score=834.23  Aligned_cols=576  Identities=36%  Similarity=0.620  Sum_probs=531.5

Q ss_pred             CCCCCCCcchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHcc
Q 004394           12 SPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYA   91 (756)
Q Consensus        12 ~~~~~~~k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~   91 (756)
                      +.|...+|||++|||++|++       ++.++|+++++|+||+|++|+|++++|++|+++++++|+++||+||+|+..++
T Consensus         5 ~~f~~~~~~e~~~i~~~L~~-------~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~   77 (591)
T 2vgl_B            5 KYFTTNKKGEIFELKAELNN-------EKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYA   77 (591)
T ss_dssp             CTTCCCSSSHHHHHHHHTTS-------SCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             hhcccccCChHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Confidence            46777899999999999997       45689999999999999999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCccc
Q 004394           92 KVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI  171 (756)
Q Consensus        92 ~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~  171 (756)
                      +.+||++++++|+|+||++|+||.+|++||++||+++.+++++++.+.|++++.|++|||||+|++|+.++|+.+|+.+.
T Consensus        78 ~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~  157 (591)
T 2vgl_B           78 KSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE  157 (591)
T ss_dssp             HHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999885


Q ss_pred             CCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 004394          172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY  251 (756)
Q Consensus       172 ~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y  251 (756)
                      +.+|++.+.++ ++|+|++|+.+|+.+|.+|+..+++..       ...+.+..+.+|++.+.+++||+|+++|++++.|
T Consensus       158 ~~~~~~~l~~l-L~d~d~~V~~~A~~aL~~i~~~~~~~~-------~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l  229 (591)
T 2vgl_B          158 DQGFLDSLRDL-IADSNPMVVANAVAALSEISESHPNSN-------LLDLNPQNINKLLTALNECTEWGQIFILDCLSNY  229 (591)
T ss_dssp             HHHHHHHHHHT-TSCSCHHHHHHHHHHHHHHTTSCCSCC-------SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred             cccHHHHHHHH-hCCCChhHHHHHHHHHHHHHhhCCCcc-------chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence            55799999997 699999999999999999998776420       0112345688999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHH
Q 004394          252 VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS---MTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHI  328 (756)
Q Consensus       252 ~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~---~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~  328 (756)
                      +|.++++..++++.+.++++|.|++|+++|+++++++...   .++..+.++.++.++|+.+++ +++|+||+||++|..
T Consensus       230 ~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~  308 (591)
T 2vgl_B          230 NPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINL  308 (591)
T ss_dssp             CCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998742   234445566788888887765 789999999999999


Q ss_pred             HHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCC-h
Q 004394          329 LVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD-V  407 (756)
Q Consensus       329 L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~-~  407 (756)
                      +++.+|+.+.+|++.|+|+.+||.+||++|+++|+.|+|++|++.|++||.+|+.+.|.+|+++++++||.||.+|+. .
T Consensus       309 i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~  388 (591)
T 2vgl_B          309 IVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA  388 (591)
T ss_dssp             HHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999974 5


Q ss_pred             hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCChHHHHH
Q 004394          408 NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILE  487 (756)
Q Consensus       408 ~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~~~~iL~  487 (756)
                      .||+++|+++++..++++..|++.++++|++++|+.++.++..+.+.+ +++.+|+++++++|++||||+.+++++++++
T Consensus       389 ~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l-~~~~~~~~~~~~~wilGey~~~~~~~~~~l~  467 (591)
T 2vgl_B          389 ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENL-DSLDEPDARAAMIWIVGEYAERIDNADELLE  467 (591)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTT-TTCCSHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHH-HhccCHHHHHHHHHHHHcccccccCHHHHHH
Confidence            899999999999999999999999999999999999888777676654 5678899999999999999999999999999


Q ss_pred             HHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhcC-CChHHHhHHHHHHHHhcCCHHHHHhhcCCCCC
Q 004394          488 SLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLAD-FHQDVHDRALFYHRLLQYNVSVAERVVNPPKQ  566 (756)
Q Consensus       488 ~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~d-~d~dVrdRA~~Y~rLL~~~~e~a~~vv~~~~p  566 (756)
                      .++++|.+++ +.||.++|||++|+|.++|++.++.++++|+.++.| .|+||||||++||+||+.+++.++++|+++||
T Consensus       468 ~l~~~~~~~~-~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~~~~~~~v~~~~p  546 (591)
T 2vgl_B          468 SFLEGFHDES-TQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKP  546 (591)
T ss_dssp             HHSTTCSSSC-HHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCTTHHHHHHTSCCC
T ss_pred             HHHHhhccCC-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcCHHHHHHHHcCCCC
Confidence            9999999998 999999999999999999988888999999999876 69999999999999999988999999999999


Q ss_pred             CCcccccCCChHHHHHHHhhcCcchhhccCCCCccccCC
Q 004394          567 AVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKD  605 (756)
Q Consensus       567 ~i~~~~~~~~~~~~~~l~~~~~tls~vy~kp~~~f~~~~  605 (756)
                      +++...+..+++++++|+.+|||+|+||+||++.|+++.
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~  585 (591)
T 2vgl_B          547 LISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGS  585 (591)
T ss_dssp             CCCSCSSCCCHHHHHHHHTTTTSSHHHHTSCGGGCC---
T ss_pred             CCCCCccccCHHHHHHHHHHhCcchhhhcCCHHHHcCCc
Confidence            999888889999999999999999999999999999764
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 756
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 1e-123
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 7e-87
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 4e-09
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 1e-07
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-06
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-05
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 1e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 0.003
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query756
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.64
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.5
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.35
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.26
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.21
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.17
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.1
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.05
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.02
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.02
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.99
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.93
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.92
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.9
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.89
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.88
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.82
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.73
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.72
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.66
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.46
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.34
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.32
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.31
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.17
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.01
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.61
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.52
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 97.44
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 96.29
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 95.79
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 92.25
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 84.73
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 82.32
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 80.1
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure